Citrus Sinensis ID: 000907
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1230 | 2.2.26 [Sep-21-2011] | |||||||
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.978 | 0.838 | 0.689 | 0.0 | |
| Q9M9E1 | 1423 | ABC transporter G family | yes | no | 0.973 | 0.841 | 0.672 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | yes | no | 0.982 | 0.829 | 0.679 | 0.0 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.982 | 0.829 | 0.678 | 0.0 | |
| Q949G3 | 1436 | Pleiotropic drug resistan | N/A | no | 0.975 | 0.835 | 0.691 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | no | no | 0.992 | 0.842 | 0.660 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | no | no | 0.989 | 0.842 | 0.670 | 0.0 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | no | no | 0.982 | 0.825 | 0.670 | 0.0 | |
| Q7PC80 | 1468 | Probable pleiotropic drug | no | no | 0.990 | 0.829 | 0.654 | 0.0 | |
| O24367 | 1441 | Pleiotropic drug resistan | N/A | no | 0.985 | 0.841 | 0.662 | 0.0 |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1816 bits (4703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 867/1258 (68%), Positives = 1010/1258 (80%), Gaps = 55/1258 (4%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQ 60
+LALAGKLD +LK +GKV+YNGH++HEFVPQRTAAYISQHD+HIGEMTVRETL FSARCQ
Sbjct: 204 LLALAGKLDPALKVTGKVSYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETLEFSARCQ 263
Query: 61 GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADT 120
GVGSR++ML ELSRREKAA I PDADID++MKA EGQEANV+TDY+LK+L LD+CADT
Sbjct: 264 GVGSRFEMLAELSRREKAANIKPDADIDIYMKAAATEGQEANVVTDYVLKILGLDICADT 323
Query: 121 VVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILN 180
+VGD+M+RGISGGQ+KRVTTGEMLVGP+ ALFMDEISTGLDSSTT+ IVNSL Q IL
Sbjct: 324 MVGDDMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTYSIVNSLRQSVQILK 383
Query: 181 GTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQ 240
GTA+ISLLQPAPE YNLFDDIIL+SDG IVYQGP + V +FF SMGFKCP+RKG+ADFLQ
Sbjct: 384 GTAVISLLQPAPETYNLFDDIILLSDGYIVYQGPRDDVLEFFESMGFKCPQRKGVADFLQ 443
Query: 241 EVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTT 300
EVTS+KDQ+QYW + +EPYRF+T KEF A+QSFHVGRKLGDEL PFDK HPAALT
Sbjct: 444 EVTSKKDQQQYWSKRNEPYRFITSKEFAEAYQSFHVGRKLGDELATPFDKTKCHPAALTN 503
Query: 301 RKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDG 360
KYG+GKKELLK C RE LLMKRNSFVY+F+ +Q+ +A+I MT+F RT+M RD+ DG
Sbjct: 504 EKYGIGKKELLKVCTERELLLMKRNSFVYMFKFSQLTIMALITMTLFFRTEMPRDTTDDG 563
Query: 361 VIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIV 420
IY GALFF++ I FNGM+E++MTI KLPVFYKQRDL F+PSWAYA+P+WILKIP+++V
Sbjct: 564 GIYAGALFFVVIMIMFNGMSELAMTIFKLPVFYKQRDLLFFPSWAYAIPSWILKIPVTLV 623
Query: 421 EVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTFGSLV 480
EV +WV +TYYVIGFD N RF KQ+LLL++VNQM+S MFR I AVGR+M VA+TFGS
Sbjct: 624 EVGLWVILTYYVIGFDPNITRFLKQFLLLIVVNQMASGMFRFIGAVGRTMGVASTFGSFA 683
Query: 481 LLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKILPNKTKPLGI 540
LLL F LGGFVLSRDD+K WW WGYW SP+MY+ N+I+VNEF G W I+P + LG
Sbjct: 684 LLLQFALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGKKWNHIVPGGNETLGS 743
Query: 541 EVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTEHD 600
V+ SRGFF +AYWYW+GVGAL GF ++F F ++LAL++LNPF +A + E+ ++ E+
Sbjct: 744 TVVKSRGFFPEAYWYWIGVGALVGFTVVFNFCYSLALAYLNPFDKPQAVLPEDGENAEN- 802
Query: 601 SRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIETDQPKNRGMVLPFEPFS 660
SS IT ++ D +I Q +GMVLPFEP S
Sbjct: 803 ------------GEVSSQITSTDGGD--------------SISESQNNKKGMVLPFEPHS 836
Query: 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLA 720
+TFD++ YSVDMPQEMK +G +D+LVLL GVSGAFRPGVLTALMGV+G+GKTTLMDVLA
Sbjct: 837 ITFDDVVYSVDMPQEMKEQGAGEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 896
Query: 721 GRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVN 780
GRKT GYI G I ISGYPK QETF RISGYCEQNDIHSPYVTVYESL+YSAWLRL +V+
Sbjct: 897 GRKTGGYIDGEIKISGYPKKQETFARISGYCEQNDIHSPYVTVYESLVYSAWLRLPQDVD 956
Query: 781 SKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 840
KTR+MFV+EVMELVEL PLR ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT
Sbjct: 957 EKTRKMFVDEVMELVELGPLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1016
Query: 841 SGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA------------------ 882
SGLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD
Sbjct: 1017 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 1076
Query: 883 ----------GIPGVSKIRDGYNPATWMLEVTAPSQEIALGVDFAAIYKSSELYRINKAL 932
PGV+KI++GYNPATWMLEVTA +QE+ LG+DF +YK+S+LYR NKAL
Sbjct: 1077 HSCHLIKYFESNPGVAKIKEGYNPATWMLEVTASAQEMMLGIDFTEVYKNSDLYRRNKAL 1136
Query: 933 IQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHYTAVRFLFTIFISLIF 992
I EL P PGSK+L+F QY SF+TQC+ACLWKQHWSY RNP YTAVRF+FT FI+LIF
Sbjct: 1137 ISELGVPRPGSKDLHFETQYSQSFWTQCVACLWKQHWSYWRNPAYTAVRFIFTTFIALIF 1196
Query: 993 GTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYS 1052
GTMFWD+GTK +K QDL N MG MY AV FLGV N SSVQPVV +ER+VFYRE+ AGMYS
Sbjct: 1197 GTMFWDLGTKVSKSQDLLNAMGSMYAAVLFLGVQNASSVQPVVAIERTVFYRERAAGMYS 1256
Query: 1053 PMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMM 1112
+ YAF QV IEIPYIFVQ+ Y +IVYAMIGFEW KFFW+LF MFF+LLYFTF+GMM
Sbjct: 1257 AIPYAFGQVSIEIPYIFVQSVFYGIIVYAMIGFEWDVGKFFWYLFIMFFTLLYFTFYGMM 1316
Query: 1113 LVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQF 1172
VA TPN ++ASIV+ FYG+WN+ SGFIIPR R+PVWWRW YWANP+AWTLYG ASQF
Sbjct: 1317 GVAVTPNQNVASIVAAFFYGVWNLFSGFIIPRPRMPVWWRWYYWANPVAWTLYGLVASQF 1376
Query: 1173 GDVQDRLESGETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNFQKR 1230
GD+Q +L ETV+QFLR Y+GFKHDFLG VAAV+ +FAF FA I+ NFQ+R
Sbjct: 1377 GDIQTKLSDNETVEQFLRRYFGFKHDFLGVVAAVLTAYVFMFAFTFAFAIKAFNFQRR 1434
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1794 bits (4646), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 847/1259 (67%), Positives = 1004/1259 (79%), Gaps = 61/1259 (4%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQ 60
+LALAGKLD LK +G+VTYNGH M+EFVPQRTAAYI Q+D+HIGEMTVRET A++AR Q
Sbjct: 197 LLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHIGEMTVRETFAYAARFQ 256
Query: 61 GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADT 120
GVGSRYDML EL+RREK A I PD DID+FMKA+ G++ NV+TDYILK+L L+VCADT
Sbjct: 257 GVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVMTDYILKILGLEVCADT 316
Query: 121 VVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILN 180
+VGD+MLRGISGGQ+KRVTTGEMLVGP+ ALFMDEISTGLDSSTT+ IVNSL + HI N
Sbjct: 317 MVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSLRNYVHIFN 376
Query: 181 GTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQ 240
GTALISLLQPAPE +NLFDDIIL+++G+I+Y+GP +HV +FF +MGFKCP RKG+ADFLQ
Sbjct: 377 GTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFETMGFKCPPRKGVADFLQ 436
Query: 241 EVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTT 300
EVTS+KDQ QYW R DEPYRF+ V+EF AFQSFHVGR++GDEL +PFDK SHPAALTT
Sbjct: 437 EVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDELALPFDKTKSHPAALTT 496
Query: 301 RKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDG 360
+KYGVG KEL+K FSRE+LLMKRNSFVY F+ Q++ +A + MT+F RT+M + + DG
Sbjct: 497 KKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTMTLFFRTEMQKKTEVDG 556
Query: 361 VIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIV 420
+YTGALFFIL + FNGM+E+SMTIAKLPVFYKQRDL FYP+W Y+LP W+LKIPIS +
Sbjct: 557 SLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAWVYSLPPWLLKIPISFM 616
Query: 421 EVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTFGSLV 480
E ++ F+TYYVIGFD N GR FKQY+LL+++NQM+SA+F+++AA+GR+M+VANTFG+
Sbjct: 617 EAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVAALGRNMIVANTFGAFA 676
Query: 481 LLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKILPNKTKPLGI 540
+L+ F LGG VLSRDDIKKWW WGYW SP+MY QNAI+ NEF G+SW + + N ++ LG+
Sbjct: 677 MLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGHSWSRAVENSSETLGV 736
Query: 541 EVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTEHD 600
L SRGF AYWYW+G GAL GF++LF FGFTLAL+FLN G +A I+EE S E +
Sbjct: 737 TFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLGKPQAVIAEEPASDETE 796
Query: 601 SRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIETDQPKNRGMVLPFEPFS 660
++ RSE +E K RGMVLPFEP S
Sbjct: 797 LQSA----------------RSEG----------------VVEAGANKKRGMVLPFEPHS 824
Query: 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLA 720
+TFD + YSVDMPQEM +G +D+LVLL GV+GAFRPGVLTALMGV+G+GKTTLMDVLA
Sbjct: 825 ITFDNVVYSVDMPQEMIEQGTQEDRLVLLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLA 884
Query: 721 GRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVN 780
GRKT GYI GNITISGYPKNQ+TF RISGYCEQ DIHSP+VTVYESL+YSAWLRL EV+
Sbjct: 885 GRKTGGYIDGNITISGYPKNQQTFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVD 944
Query: 781 SKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 840
R++F+EEVMELVEL PLRQALVGLPG +GLSTEQRKRLTIAVELVANPSIIFMDEPT
Sbjct: 945 KNKRKIFIEEVMELVELTPLRQALVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPT 1004
Query: 841 SGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD------------------- 881
SGLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD
Sbjct: 1005 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGH 1064
Query: 882 ---------AGIPGVSKIRDGYNPATWMLEVTAPSQEIALGVDFAAIYKSSELYRINKAL 932
I G++KI +GYNPATWMLEV+ SQE ALGVDFA +YK+SELY+ NK L
Sbjct: 1065 ESTHLINYFESIQGINKITEGYNPATWMLEVSTTSQEAALGVDFAQVYKNSELYKRNKEL 1124
Query: 933 IQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHYTAVRFLFTIFISLIF 992
I+ELS+PAPGSK+LYF QY SF TQCMA LWKQHWSY RNP YTAVRFLFTI I+L+F
Sbjct: 1125 IKELSQPAPGSKDLYFPTQYSQSFLTQCMASLWKQHWSYWRNPPYTAVRFLFTIGIALMF 1184
Query: 993 GTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYS 1052
GTMFWD+G KT +QDL N MG MY AV FLG+ N +SVQPVV++ER+VFYRE+ AGMYS
Sbjct: 1185 GTMFWDLGGKTKTRQDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFYREQAAGMYS 1244
Query: 1053 PMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMM 1112
M YAFAQV IEIPY+ VQA Y LIVYAMIGFEWTA KFFW+LFFM+ S L FTF+GMM
Sbjct: 1245 AMPYAFAQVFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMM 1304
Query: 1113 LVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQF 1172
VA TPNHHIAS+VS+ FYG+WN+ SGF+IPR +PVWW W YW P+AWTLYG ASQF
Sbjct: 1305 AVAMTPNHHIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQF 1364
Query: 1173 GDVQDRL-ESGETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNFQKR 1230
GD+ + + +S +VKQF+R +YG++ FLG VAA+ + P LFA +FA+GI+ NFQKR
Sbjct: 1365 GDITEPMADSNMSVKQFIREFYGYREGFLGVVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423
|
May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1759 bits (4555), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 849/1250 (67%), Positives = 985/1250 (78%), Gaps = 41/1250 (3%)
Query: 12 LKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVE 71
LKASGKVTYNGH M EFVP+RTAAYISQHD+HIGEMTVRETLAFSARCQGVGSR+DML E
Sbjct: 218 LKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVRETLAFSARCQGVGSRFDMLTE 277
Query: 72 LSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGIS 131
LSRREKAA I PDADID FMKA GQEANV TDYILK+L L++CADT+VGDEMLRGIS
Sbjct: 278 LSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILGLEICADTMVGDEMLRGIS 337
Query: 132 GGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPA 191
GGQRKRVTTGEMLVGPA ALFMDEISTGLDSSTTF IVNSL Q HIL GTA+ISLLQPA
Sbjct: 338 GGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQTVHILGGTAVISLLQPA 397
Query: 192 PEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQEVTSRKDQEQY 251
PE YNLFDDIIL+SDGQIVYQGP E V +FF SMGFKCP RKG+ADFLQEVTS+KDQ QY
Sbjct: 398 PETYNLFDDIILLSDGQIVYQGPREDVLEFFESMGFKCPDRKGVADFLQEVTSKKDQRQY 457
Query: 252 WVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTTRKYGVGKKELL 311
W R+D+PYRFVTVKEFV AFQSFH GR + +EL +PFDK SHPAAL T +YG KELL
Sbjct: 458 WARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHPAALATTRYGAPGKELL 517
Query: 312 KACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVIYTGALFFIL 371
KA RE LLMKRNSFVY+FR Q+M +++I MT+F RTKM RDS+T G IY GALFF +
Sbjct: 518 KANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRDSVTSGGIYMGALFFGV 577
Query: 372 TTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIVEVSVWVFMTYY 431
I FNG +E+++T+ KLPVF+KQRDL FYP+W+Y +P+WILKIPI+ +EV +VF+TYY
Sbjct: 578 LMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKIPITFIEVGGYVFLTYY 637
Query: 432 VIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTFGSLVLLLLFVLGGFV 491
VIGFDSN G FFKQYLL+L +NQM+ ++FR I R+M+VAN F S +LL+ VLGGF+
Sbjct: 638 VIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANVFASFMLLIFMVLGGFI 697
Query: 492 LSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKILPNK--TKPLGIEVLDSRGFF 549
L+R+ +KKWW WGYW SP+MYAQNAI VNE +G+SW KI+ + + LG++VL SRG F
Sbjct: 698 LAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSASNETLGVQVLKSRGVF 757
Query: 550 TDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTEHDSRTGGTVQL 609
+A WYW+G GA+ GF ILF FTLAL++L P+G S+ +SEE + + G V
Sbjct: 758 PEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEEELKEKRANLNGEIV-- 815
Query: 610 STCANSSSHITRSESRDYVRRRNSSSQSRETTIETD-QPKNRGMVLPFEPFSLTFDEITY 668
H++ +R R + +++ T ++ D + RGMVLPF P SL+FD + Y
Sbjct: 816 -----GDVHLSSGSTR---RPMGNGTENDSTIVDDDTEVTQRGMVLPFTPLSLSFDNVRY 867
Query: 669 SVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI 728
SVDMPQEMK +GV DD+L LL GVSG+FRPGVLTALMGV+G+GKTTLMDVLAGRKT GYI
Sbjct: 868 SVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI 927
Query: 729 TGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFV 788
G+I ISGYPK QETF R+SGYCEQNDIHSP VTVYESLL+SAWLRL +V+S TR+MF+
Sbjct: 928 EGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPEDVDSNTRKMFI 987
Query: 789 EEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 848
EEVMELVEL LR ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA
Sbjct: 988 EEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1047
Query: 849 AVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD-------------AG------------ 883
A+VMRTVRNTV+TGRTVVCTIHQPSIDIFEAFD AG
Sbjct: 1048 AIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPLGHHSSELIKY 1107
Query: 884 ---IPGVSKIRDGYNPATWMLEVTAPSQEIALGVDFAAIYKSSELYRINKALIQELSKPA 940
IPGVSKI+DGYNPATWMLEVT QE ALGVDF+ IYK SELY+ NKALI++LS+PA
Sbjct: 1108 FESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSELYQRNKALIKDLSQPA 1167
Query: 941 PGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHYTAVRFLFTIFISLIFGTMFWDMG 1000
P S +LYF QY S TQCMACLWKQ+ SY RNP Y AVRF FT I+L+FGT+FWD+G
Sbjct: 1168 PDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIALLFGTIFWDLG 1227
Query: 1001 TKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQ 1060
K TK QDLFN MG MY AV F+GV+N +SVQPVV +ER+VFYRE+ AGMYS YAF Q
Sbjct: 1228 GKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSAFPYAFGQ 1287
Query: 1061 VLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMMLVAWTPNH 1120
V+IEIPY VQA Y +IVYAMIGFEWTAAKFFW+LFFM F+LLYFTF+GMM V TPN+
Sbjct: 1288 VVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLTPNY 1347
Query: 1121 HIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQDRLE 1180
HIASIVS+ FY +WN+ SGF+IPR R+P+WWRW WA P+AWTLYG SQFGD++ +E
Sbjct: 1348 HIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDIETPME 1407
Query: 1181 SGETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNFQKR 1230
G VK F+ +Y+GFKH +LG VA VV LFA +F I NFQKR
Sbjct: 1408 DGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1756 bits (4548), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 848/1250 (67%), Positives = 984/1250 (78%), Gaps = 41/1250 (3%)
Query: 12 LKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVE 71
LKASGKVTYNGH M EFVP+RTAAYISQHD+HIGEMTVRETLAFSARCQGVGSR+DML E
Sbjct: 218 LKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVRETLAFSARCQGVGSRFDMLTE 277
Query: 72 LSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGIS 131
LSRREKAA I PDADID FMKA GQEANV TDYILK+L L++CADT+VGDEMLRGIS
Sbjct: 278 LSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILGLEICADTMVGDEMLRGIS 337
Query: 132 GGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPA 191
GGQRKRVTTGEMLVGPA ALFMDEISTGLDSSTTF IVNSL Q HIL GTA+ISLLQPA
Sbjct: 338 GGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQTVHILGGTAVISLLQPA 397
Query: 192 PEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQEVTSRKDQEQY 251
PE YNLFDDIIL+SDGQIVYQGP E V +FF S GFKCP RKG+ADFLQEVTS+KDQ QY
Sbjct: 398 PETYNLFDDIILLSDGQIVYQGPREDVLEFFESTGFKCPDRKGVADFLQEVTSKKDQRQY 457
Query: 252 WVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTTRKYGVGKKELL 311
W R+D+PYRFVTVKEFV AFQSFH GR + +EL +PFDK SHPAAL T +YG KELL
Sbjct: 458 WARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHPAALATTRYGAPGKELL 517
Query: 312 KACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVIYTGALFFIL 371
KA RE LLMKRNSFVY+FR Q+M +++I MT+F RTKM RDS+T G IY GALFF +
Sbjct: 518 KANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRDSVTSGGIYMGALFFGV 577
Query: 372 TTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIVEVSVWVFMTYY 431
I FNG +E+++T+ KLPVF+KQRDL FYP+W+Y +P+WILKIPI+ +EV +VF+TYY
Sbjct: 578 LMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKIPITFIEVGGYVFLTYY 637
Query: 432 VIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTFGSLVLLLLFVLGGFV 491
VIGFDSN G FFKQYLL+L +NQM+ ++FR I R+M+VAN F S +LL+ VLGGF+
Sbjct: 638 VIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANVFASFMLLIFMVLGGFI 697
Query: 492 LSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKILPNK--TKPLGIEVLDSRGFF 549
L+R+ +KKWW WGYW SP+MYAQNAI VNE +G+SW KI+ + + LG++VL SRG F
Sbjct: 698 LAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSASNETLGVQVLKSRGVF 757
Query: 550 TDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTEHDSRTGGTVQL 609
+A WYW+G GA+ GF ILF FTLAL++L P+G S+ +SEE + + G V
Sbjct: 758 PEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEEELKEKRANLNGEIV-- 815
Query: 610 STCANSSSHITRSESRDYVRRRNSSSQSRETTIETD-QPKNRGMVLPFEPFSLTFDEITY 668
H++ +R R + +++ T ++ D + RGMVLPF P SL+FD + Y
Sbjct: 816 -----GDVHLSSGSTR---RPMGNGTENDSTIVDDDTEVTQRGMVLPFTPLSLSFDNVRY 867
Query: 669 SVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI 728
SVDMPQEMK +GV DD+L LL GVSG+FRPGVLTALMGV+G+GKTTLMDVLAGRKT GYI
Sbjct: 868 SVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI 927
Query: 729 TGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFV 788
G+I ISGYPK QETF R+SGYCEQNDIHSP VTVYESLL+SAWLRL +V+S TR+MF+
Sbjct: 928 EGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPEDVDSNTRKMFI 987
Query: 789 EEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 848
EEVMELVEL LR ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA
Sbjct: 988 EEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1047
Query: 849 AVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD-------------AG------------ 883
A+VMRTVRNTV+TGRTVVCTIHQPSIDIFEAFD AG
Sbjct: 1048 AIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPLGHHSSELIKY 1107
Query: 884 ---IPGVSKIRDGYNPATWMLEVTAPSQEIALGVDFAAIYKSSELYRINKALIQELSKPA 940
IPGVSKI+DGYNPATWMLEVT QE ALGVDF+ IYK SELY+ NKALI++LS+PA
Sbjct: 1108 FESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSELYQRNKALIKDLSQPA 1167
Query: 941 PGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHYTAVRFLFTIFISLIFGTMFWDMG 1000
P S +LYF QY S TQCMACLWKQ+ SY RNP Y AVRF FT I+L+FGT+FWD+G
Sbjct: 1168 PDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIALLFGTIFWDLG 1227
Query: 1001 TKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQ 1060
K TK QDLFN MG MY AV F+GV+N +SVQPVV +ER+VFYRE+ AGMYS YAF Q
Sbjct: 1228 GKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSAFPYAFGQ 1287
Query: 1061 VLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMMLVAWTPNH 1120
V+IEIPY VQA Y +IVYAMIGFEWTAAKFFW+LFFM F+LLYFTF+GMM V TPN+
Sbjct: 1288 VVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLTPNY 1347
Query: 1121 HIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQDRLE 1180
HIASIVS+ FY +WN+ SGF+IPR R+P+WWRW WA P+AWTLYG SQFGD++ +E
Sbjct: 1348 HIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDIETPME 1407
Query: 1181 SGETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNFQKR 1230
G VK F+ +Y+GFKH +LG VA VV LFA +F I NFQKR
Sbjct: 1408 DGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q949G3|PDR1_NICPL Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1726 bits (4470), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 871/1259 (69%), Positives = 1015/1259 (80%), Gaps = 59/1259 (4%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQ 60
+LALAGKLDS+LK +GKVTYNGH++HEFVPQRTAAYISQHD+HIGEMTVRETL FSARCQ
Sbjct: 208 LLALAGKLDSALKVTGKVTYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETLEFSARCQ 267
Query: 61 GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADT 120
GVGSRY+ML ELSRREKAA I PDADID+FMKA EGQEA V+TDYILK+L LD+CADT
Sbjct: 268 GVGSRYEMLAELSRREKAANIKPDADIDMFMKAASTEGQEAKVVTDYILKILGLDICADT 327
Query: 121 VVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILN 180
+VGD+M+RGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTT+ IVNSL Q I+
Sbjct: 328 MVGDQMIRGISGGQKKRVTTGEMIVGPSKALFMDEISTGLDSSTTYSIVNSLKQSVRIMK 387
Query: 181 GTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQ 240
GTALISLLQPAPE YNLFDDIIL+SDG IVY+GP E V +FF SMGFKCP+RKG ADFLQ
Sbjct: 388 GTALISLLQPAPETYNLFDDIILLSDGYIVYEGPREEVLEFFESMGFKCPERKGAADFLQ 447
Query: 241 EVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTT 300
EVTS+KDQ+QYW+R DEPYRF+T KEF A+QSFHVGRK+ DEL FDK SHPAALTT
Sbjct: 448 EVTSKKDQQQYWIRRDEPYRFITSKEFAEAYQSFHVGRKVSDELKTTFDKSKSHPAALTT 507
Query: 301 RKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDG 360
+KYG+GK++LLK C RE LLM+RNSFVY+F+ Q++ +A++ MTIF RTKM RDS DG
Sbjct: 508 QKYGIGKRQLLKVCTERELLLMQRNSFVYLFKFFQLLIIALMTMTIFFRTKMPRDSAEDG 567
Query: 361 VIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIV 420
IY+GALFF++ I FNG++E+ MT+ KLPVFYKQRD FYPSWAYA+P+WILKIP++
Sbjct: 568 GIYSGALFFVVIMIMFNGLSELPMTLYKLPVFYKQRDFLFYPSWAYAIPSWILKIPVTFA 627
Query: 421 EVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTFGSLV 480
EV +WVF+TYYV+GFD N GRFFKQ+LLLL+VNQM+SA+FR IAAVGR+M VA+TFG+
Sbjct: 628 EVGMWVFLTYYVMGFDPNVGRFFKQFLLLLLVNQMASALFRFIAAVGRTMGVASTFGAFA 687
Query: 481 LLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKILPNKTKPLGI 540
LLL F LGGF+L+R+D+K WW WGYW SPLMY+ NAI+VNEF G WK I+ T+PLG
Sbjct: 688 LLLQFALGGFILARNDVKDWWIWGYWTSPLMYSVNAILVNEFDGQKWKHIVAGGTEPLGA 747
Query: 541 EVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTEHD 600
V+ +RGFF DAYWYW+GVGAL GFI++F +++AL++LNPF +A IS+ES++
Sbjct: 748 AVVRARGFFPDAYWYWIGVGALAGFIVMFNIAYSVALAYLNPFDKPQATISDESENN--- 804
Query: 601 SRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIETDQPKNRGMVLPFEPFS 660
+ SS IT ++ D S+S++ K +GMVLPF+P S
Sbjct: 805 -----------ESESSPQITSTQEGD------SASEN----------KKKGMVLPFDPHS 837
Query: 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLA 720
+TFDE+ YSVDMP EM+ G D++LVLL VSGAFRPGVLTALMGV+G+GKTTLMDVLA
Sbjct: 838 ITFDEVVYSVDMPPEMRESGTSDNRLVLLKSVSGAFRPGVLTALMGVSGAGKTTLMDVLA 897
Query: 721 GRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVN 780
GRKT GYI G+I ISGYPK Q+TF RISGYCEQNDIHSPYVTV+ESL+YSAWLRL +VN
Sbjct: 898 GRKTGGYIDGSIKISGYPKKQDTFARISGYCEQNDIHSPYVTVFESLVYSAWLRLPQDVN 957
Query: 781 SKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 840
+ R MFVEEVM+LVEL PLR ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT
Sbjct: 958 EEKRMMFVEEVMDLVELTPLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1017
Query: 841 SGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA------------------ 882
SGLDARAAA+VMR VRNTVDTGRTVVCTIHQPSIDIFEAFD
Sbjct: 1018 SGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 1077
Query: 883 ----------GIPGVSKIRDGYNPATWMLEVTAPSQEIALGVDFAAIYKSSELYRINKAL 932
IPGVSKI +GYNPATWMLEVTA SQE+ALGVDF +YK S+LYR NKAL
Sbjct: 1078 QSCHLIKYFESIPGVSKIVEGYNPATWMLEVTASSQEMALGVDFTDLYKKSDLYRRNKAL 1137
Query: 933 IQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHYTAVRFLFTIFISLIF 992
I ELS P PG+ +L+F +++ F+TQCMACLWKQHWSY RNP YTAVR +FT FI+LIF
Sbjct: 1138 IDELSVPRPGTSDLHFDSEFSQPFWTQCMACLWKQHWSYWRNPAYTAVRLIFTTFIALIF 1197
Query: 993 GTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYS 1052
GTMFWD+GTK ++ QDL N MG MY AV FLGV N SSVQPVV +ER+VFYREK AGMYS
Sbjct: 1198 GTMFWDIGTKVSRNQDLVNAMGSMYAAVLFLGVQNSSSVQPVVSVERTVFYREKAAGMYS 1257
Query: 1053 PMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMM 1112
+ YAFAQVLIEIPYIFVQA Y LIVY+MIGFEWT AKFFW FFMFF+ LYFTFFGMM
Sbjct: 1258 AIPYAFAQVLIEIPYIFVQATVYGLIVYSMIGFEWTVAKFFWDFFFMFFTFLYFTFFGMM 1317
Query: 1113 LVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQF 1172
VA TPN ++ASIV+ FY +WN+ SGFI+PR RIP+WWRW YW PIAWTLYG ASQF
Sbjct: 1318 TVAVTPNQNVASIVAGFFYTVWNLFSGFIVPRPRIPIWWRWYYWGCPIAWTLYGLVASQF 1377
Query: 1173 GDVQDRL-ESGETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNFQKR 1230
GD+QD L + +TV+QFLRS +GFKHDFLG VAAV+ +FAF FALGI+ NFQ+R
Sbjct: 1378 GDLQDPLTDQNQTVEQFLRSNFGFKHDFLGVVAAVIVAFAVVFAFTFALGIKAFNFQRR 1436
|
Excretes secondary metabolites such as terpenes. Involved in both constitutive and jasmonic acid-dependent induced defense. Confers some resistance to sclareol and B.cinerea. Nicotiana plumbaginifolia (taxid: 4092) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1722 bits (4460), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 831/1259 (66%), Positives = 986/1259 (78%), Gaps = 38/1259 (3%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQ 60
+LALAGKLD LK SGKVTYNGH MHEFVP+RTAAYISQHD+HIGEMTVRETLAFSARCQ
Sbjct: 201 LLALAGKLDKDLKVSGKVTYNGHGMHEFVPERTAAYISQHDLHIGEMTVRETLAFSARCQ 260
Query: 61 GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADT 120
GVG+RY+ML EL+RREKAA I PD DID++MKA GQE++V+TDYILK+L LD+CADT
Sbjct: 261 GVGTRYEMLTELARREKAANIKPDHDIDIYMKASAMGGQESSVVTDYILKILGLDICADT 320
Query: 121 VVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILN 180
VVG+EMLRGISGGQRKRVTTGEMLVGPA ALFMDEISTGLDSSTT+ IVNSL Q HIL
Sbjct: 321 VVGNEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQTIHILG 380
Query: 181 GTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQ 240
GTA+ISLLQPAPE YNLFDDIIL+SDGQ+VYQGP EHV +FF MGF+CP RKG+ADFLQ
Sbjct: 381 GTAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEFFEFMGFRCPARKGVADFLQ 440
Query: 241 EVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTT 300
EVTSRKDQ QYW R D PYRFV VK+F AF+SFHVGR + +EL PFD+ SHPAAL T
Sbjct: 441 EVTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSFHVGRSIQNELSEPFDRTRSHPAALAT 500
Query: 301 RKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDG 360
KYGV +KELLKA RE LLMKRN+F+YIF+ + +A+I MT F RT M D G
Sbjct: 501 SKYGVSRKELLKATIDRELLLMKRNAFMYIFKAVNLTLMALIVMTTFFRTSMRHDR-DYG 559
Query: 361 VIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIV 420
+IY GAL+F L T+ FNG AE++MT+ KLPVF+KQRDL F+P+WAY +P+WIL+IPI+ +
Sbjct: 560 MIYLGALYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAWAYTIPSWILQIPITFL 619
Query: 421 EVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTFGSLV 480
EV V+VF+TYYVIGFD + RFFKQYLLLL +NQMSSA+FR IA +GR MVV++TFG L
Sbjct: 620 EVGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIAGIGRDMVVSHTFGPLS 679
Query: 481 LLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKILPNKTKPLGI 540
LL LGGF+L+R D+KKWW WGYW SPL YAQNAI NEFLG+SW +ILP + LG+
Sbjct: 680 LLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGHSWSQILPGENVTLGV 739
Query: 541 EVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTEHD 600
VL SRG FT+A WYW+G+GAL G+ +LF +T+ALS L+PF S A +SE++ +H
Sbjct: 740 SVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSPFTDSHASMSEDALKEKHA 799
Query: 601 SRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIETDQPKNRGMVLPFEPFS 660
+ TG V+ S + ++ +NS S +++ +GMVLPF P S
Sbjct: 800 NLTGEVVEGQKDTKSRK---QELELSHIADQNSGINSADSS-----ASRKGMVLPFAPLS 851
Query: 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLA 720
++F+++ YSVDMP+ MK +G+ +D+L+LL GVSG+FRPGVLTALMGV+G+GKTTLMDVLA
Sbjct: 852 ISFNDVRYSVDMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLA 911
Query: 721 GRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVN 780
GRKT GYI G+I ISGYPK QETF RISGYCEQNDIHSP+VTVYESL++SAWLRL SEV+
Sbjct: 912 GRKTGGYIEGDIRISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVFSAWLRLPSEVD 971
Query: 781 SKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 840
S+ R+MF+EEVM+LVEL LR ALVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPT
Sbjct: 972 SEARKMFIEEVMDLVELTSLRGALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1031
Query: 841 SGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA------------------ 882
SGLDARAAA+VMRTVRNTV+TGRTVVCTIHQPSIDIFEAFD
Sbjct: 1032 SGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPVGQ 1091
Query: 883 ----------GIPGVSKIRDGYNPATWMLEVTAPSQEIALGVDFAAIYKSSELYRINKAL 932
GI GVS+I+DGYNPATWMLEVT+ +QE LGVDF+ IY+ SELY+ NK L
Sbjct: 1092 NSSKLIEYFEGIDGVSRIKDGYNPATWMLEVTSSAQEEMLGVDFSEIYRQSELYQRNKEL 1151
Query: 933 IQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHYTAVRFLFTIFISLIF 992
I+ELS P PGS +L F QY SF TQC+ACLWKQ+WSY RNP YTAVR LFTI I+L+F
Sbjct: 1152 IEELSTPPPGSTDLNFPTQYSRSFITQCLACLWKQNWSYWRNPSYTAVRLLFTIVIALMF 1211
Query: 993 GTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYS 1052
GTMFW++GT+T KQQDLFN MG MY AV ++GV N SVQPVV +ER+VFYRE+ AGMYS
Sbjct: 1212 GTMFWNLGTRTKKQQDLFNAMGSMYAAVLYIGVQNSGSVQPVVVVERTVFYRERAAGMYS 1271
Query: 1053 PMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMM 1112
YAF QV IE+PYI VQ Y ++VY+MIGFEWT AKF W+LFFM+F+LLYFTF+GMM
Sbjct: 1272 AFPYAFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYLFFMYFTLLYFTFYGMM 1331
Query: 1113 LVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQF 1172
V TPN IA+I+S+ FY +WN+ SG++IPR +IPVWWRW W P+AWTLYG ASQF
Sbjct: 1332 AVGLTPNESIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWICPVAWTLYGLVASQF 1391
Query: 1173 GDVQDRLESG-ETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNFQKR 1230
GD+Q LE TV QF+ Y+GF H+FL VA V V FAF+F+ I NFQ+R
Sbjct: 1392 GDIQHVLEGDTRTVAQFVTDYFGFHHNFLWVVAVVHVVFAVTFAFLFSFAIMKFNFQRR 1450
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1718 bits (4449), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 845/1261 (67%), Positives = 1006/1261 (79%), Gaps = 44/1261 (3%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQ 60
+LALAGKLDS+LK SG+VTYNGHDM EFVPQRT+AYI QHD+HIGEMTVRETLAFSARCQ
Sbjct: 197 LLALAGKLDSTLKVSGRVTYNGHDMDEFVPQRTSAYIGQHDLHIGEMTVRETLAFSARCQ 256
Query: 61 GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADT 120
GVG+RYDML ELSRREK A I PD DIDV+MKA+ EGQE+ V+TDYILK+L L++CADT
Sbjct: 257 GVGTRYDMLTELSRREKEASIKPDPDIDVYMKAISVEGQES-VVTDYILKILGLEICADT 315
Query: 121 VVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILN 180
+VGD M+RGISGGQ+KRVTTGEMLVGPA ALFMDEISTGLDSSTT+ IVNSL Q HIL
Sbjct: 316 MVGDAMIRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTYQIVNSLRQSVHILG 375
Query: 181 GTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQ 240
GTALI+LLQPAPE Y+LFDDI+L+S+GQIVYQGP E++ +FF +MGFKCP+RKG+ADFLQ
Sbjct: 376 GTALIALLQPAPETYDLFDDIVLLSEGQIVYQGPRENILEFFEAMGFKCPERKGVADFLQ 435
Query: 241 EVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTT 300
EVTSRKDQ QYW R DEPYR+++V +F AF+ FHVGR LG EL +PFD+ +HPAALTT
Sbjct: 436 EVTSRKDQHQYWCRRDEPYRYISVNDFSEAFKEFHVGRNLGSELRVPFDRTRNHPAALTT 495
Query: 301 RKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDG 360
+YG+ K EL KACFSRE LLMKRNSFVYIF++ Q++ L IGMT+FLRTKMHR S+ DG
Sbjct: 496 SRYGISKMELTKACFSREWLLMKRNSFVYIFKILQLIILGSIGMTVFLRTKMHRRSVEDG 555
Query: 361 VIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIV 420
I+ GA+F L T FNG AE++M+IAKLP+FYKQRDL FYPSWAYALP W+LKIPIS +
Sbjct: 556 AIFLGAMFLGLVTHLFNGFAELAMSIAKLPIFYKQRDLLFYPSWAYALPTWVLKIPISFL 615
Query: 421 EVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTFGSLV 480
E +VW+ MTYYV+GFD N RFF+ Y+LL++++QM+S +FRL+AA+GR MVVA+TFGS
Sbjct: 616 ECAVWICMTYYVMGFDPNIERFFRHYVLLVLISQMASGLFRLLAALGREMVVADTFGSFA 675
Query: 481 LLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKIL-PNKTKP-L 538
L+L VLGGF++SR++IKKWW WGYW SPLMYAQNAI VNEFLG+SW K++ P ++ L
Sbjct: 676 QLILLVLGGFLISRENIKKWWIWGYWSSPLMYAQNAIAVNEFLGHSWNKVVDPTQSNDTL 735
Query: 539 GIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTE 598
G++VL RG F DA WYW+GVGAL G+I+LF F L L +L+P G +A +SEE +
Sbjct: 736 GVQVLKVRGIFVDANWYWIGVGALLGYIMLFNILFILFLEWLDPLGKGQAVVSEEELREK 795
Query: 599 HDSRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIETDQPKNRGMVLPFEP 658
H +RTG V+L T S + S + + I + RGMVLPF P
Sbjct: 796 HVNRTGENVELLTLGTDSQN------------SPSDANAGRGEITGADTRKRGMVLPFTP 843
Query: 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDV 718
S+TFD I YSVDMPQEMK +GV +D+L+LL GVSGAFRPGVLTALMGV+G+GKTTLMDV
Sbjct: 844 LSITFDNIRYSVDMPQEMKDKGVTEDRLLLLKGVSGAFRPGVLTALMGVSGAGKTTLMDV 903
Query: 719 LAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSE 778
LAGRKT GYI G+I+ISGYPK QETF RI+GYCEQNDIHSP+VTVYESLLYSAWLRL SE
Sbjct: 904 LAGRKTGGYIEGDISISGYPKKQETFARIAGYCEQNDIHSPHVTVYESLLYSAWLRLPSE 963
Query: 779 VNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 838
V+S+ R+MFVEEVMELVEL LR ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE
Sbjct: 964 VDSEARKMFVEEVMELVELTSLRGALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1023
Query: 839 PTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD----------------- 881
PTSGLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD
Sbjct: 1024 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPL 1083
Query: 882 -----------AGIPGVSKIRDGYNPATWMLEVTAPSQEIALGVDFAAIYKSSELYRINK 930
GI GV KI+DGYNPATWMLEVT +QE LG++FA +Y++S+LY+ NK
Sbjct: 1084 GHNSCHLINYFEGIQGVRKIKDGYNPATWMLEVTTLAQEDILGINFAEVYRNSDLYQRNK 1143
Query: 931 ALIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHYTAVRFLFTIFISL 990
LI ELS P PGS +L+F Q+ FFTQCMACLWKQH SY RNP YTA R FT I+L
Sbjct: 1144 TLISELSTPPPGSTDLHFPTQFSQPFFTQCMACLWKQHKSYWRNPSYTATRIFFTTVIAL 1203
Query: 991 IFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGM 1050
IFGT+F ++G K K+ DLFN++G MY AV F+G+ N +VQP+VD+ER+VFYREK AGM
Sbjct: 1204 IFGTIFLNLGKKINKRLDLFNSLGSMYAAVLFIGIQNGQTVQPIVDVERTVFYREKAAGM 1263
Query: 1051 YSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFG 1110
YS + YAFAQVLIEIP+IF+Q Y LIVY++IGF+WT KFFW++FFMFF+ +YFTF+G
Sbjct: 1264 YSALPYAFAQVLIEIPHIFLQTVVYGLIVYSLIGFDWTVEKFFWYMFFMFFTFMYFTFYG 1323
Query: 1111 MMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFAS 1170
MM VA TPN IA+IVST FY +WNI +GF+IPR RIP+WWRW WA P+AWTLYG AS
Sbjct: 1324 MMAVAMTPNSDIAAIVSTAFYCIWNIFAGFLIPRPRIPIWWRWYSWACPVAWTLYGLVAS 1383
Query: 1171 QFGDVQDR-LESGETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNFQK 1229
Q+GD+ + LE GE V+ ++R Y+GF+HD+LG VA V +LFAFVFA I+V NFQ+
Sbjct: 1384 QYGDITNSTLEDGEVVQDYIRRYFGFRHDYLGYVATAVVGFAALFAFVFAFSIKVFNFQR 1443
Query: 1230 R 1230
R
Sbjct: 1444 R 1444
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1715 bits (4442), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 838/1249 (67%), Positives = 983/1249 (78%), Gaps = 41/1249 (3%)
Query: 12 LKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVE 71
+K SG+VTYNGH M +FVPQRTAAYISQHD+HIGEMTVRETL+FSARCQGVGSR+DML E
Sbjct: 227 IKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRETLSFSARCQGVGSRFDMLTE 286
Query: 72 LSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGIS 131
LSRREKAA I PDADID FMKA EGQE N+ITDYILK+L LD+CADT+VGD+M+RGIS
Sbjct: 287 LSRREKAANIKPDADIDAFMKASAMEGQETNLITDYILKILGLDICADTMVGDDMVRGIS 346
Query: 132 GGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPA 191
GGQRKRVTTGEMLVGPA+ALFMDEISTGLDSSTTF IV SL Q HIL GTA+ISLLQPA
Sbjct: 347 GGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIVKSLRQAIHILGGTAVISLLQPA 406
Query: 192 PEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQEVTSRKDQEQY 251
PE Y+LFDDIIL+SDGQIVYQGP E V +FF MGFKCP+RKG+ADFLQEVTSRKDQ+QY
Sbjct: 407 PETYDLFDDIILLSDGQIVYQGPREGVLEFFELMGFKCPERKGVADFLQEVTSRKDQKQY 466
Query: 252 WVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTTRKYGVGKKELL 311
W+++D+PYR+V VK+F AFQSFH G+ + +EL PFDK +HPAALTT +YGV ELL
Sbjct: 467 WMQHDKPYRYVPVKDFASAFQSFHTGKSIANELATPFDKSKNHPAALTTSRYGVSAMELL 526
Query: 312 KACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVIYTGALFFIL 371
KA RE LLMKRNSFVYIFR Q+M ++ I MT+F RTKMHRDS+TDGVI+ GALFF +
Sbjct: 527 KANIDREFLLMKRNSFVYIFRACQLMVVSAIAMTVFFRTKMHRDSVTDGVIFMGALFFSV 586
Query: 372 TTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIVEVSVWVFMTYY 431
I FNG++E+ +TI KLPVF+KQRDL F+P+W Y +P+WILKIP+S +EV +VFM+YY
Sbjct: 587 MMIMFNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWILKIPMSFIEVGGFVFMSYY 646
Query: 432 VIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTFGSLVLLLLFVLGGFV 491
VIGFD +AGRFFKQYLL+L +NQM++A+FR + R+M+VAN FGS +LL+ VLGGF+
Sbjct: 647 VIGFDPSAGRFFKQYLLMLAINQMAAALFRFVGGAARNMIVANVFGSFMLLIFMVLGGFI 706
Query: 492 LSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKILPN--KTKPLGIEVLDSRGFF 549
L R+ +KKWW WGYW SP+MYAQNAI VNEFLG+SW K+L N + LG++ L SRG F
Sbjct: 707 LVREKVKKWWIWGYWISPMMYAQNAISVNEFLGHSWDKVLNNSLSNETLGVQALRSRGVF 766
Query: 550 TDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTEHDSRTGGTVQL 609
+A WYW+G GAL GFI+LF FTLAL++L P+G S+ +SEE + + G + +
Sbjct: 767 PEAKWYWIGFGALLGFIMLFNGLFTLALTYLKPYGKSQPSVSEEELKEKQANINGNVLDV 826
Query: 610 STCANSSSHITRSESRDYVRRRNSSSQSRETTIETDQPKNRGMVLPFEPFSLTFDEITYS 669
T A+S++ V +SS+ + QP RGMVLPF P SLTFD I YS
Sbjct: 827 DTMASSTNLAI-------VDNTETSSE----IADNSQPTQRGMVLPFAPLSLTFDNIKYS 875
Query: 670 VDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT 729
VDMPQEMK G+ +D+L LL GVSG+FRPGVLTALMGV+G+GKTTLMDVLAGRKT GYI
Sbjct: 876 VDMPQEMKAHGIVEDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE 935
Query: 730 GNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVE 789
GNITISGYPK QETF R+SGYCEQNDIHSP VTV ESLL+SAWLRL +V+S TR+MF+E
Sbjct: 936 GNITISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDSNTRKMFIE 995
Query: 790 EVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 849
EVMELVEL PLR ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA
Sbjct: 996 EVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1055
Query: 850 VVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD---------------------------- 881
+VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD
Sbjct: 1056 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHQSSELIKYF 1115
Query: 882 AGIPGVSKIRDGYNPATWMLEVTAPSQEIALGVDFAAIYKSSELYRINKALIQELSKPAP 941
GI GVS+I+DGYNPATWMLEV+ SQE ALGVDF IY+ SEL++ NKALIQELS P P
Sbjct: 1116 EGIKGVSRIKDGYNPATWMLEVSTISQEQALGVDFCDIYRKSELFQRNKALIQELSTPPP 1175
Query: 942 GSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHYTAVRFLFTIFISLIFGTMFWDMGT 1001
GS ELYF +Y LSF QC+ACLWK H SY RNP Y A+R FT I+L+FGT+FWD+G
Sbjct: 1176 GSSELYFPTKYSLSFLNQCLACLWKMHLSYWRNPPYNAIRLFFTTVIALLFGTIFWDLGG 1235
Query: 1002 KTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQV 1061
KT K QDLFN MG MY AV F+GVLN SVQPVV +ER+VFYRE+ AGMYS YAF QV
Sbjct: 1236 KTGKSQDLFNAMGSMYSAVLFIGVLNSQSVQPVVSVERTVFYRERAAGMYSAFPYAFGQV 1295
Query: 1062 LIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMMLVAWTPNHH 1121
IE PY VQ+ Y +IVY+MIGF+WTAAKFFW+LFFMFF+ LYFTF+GMM V TP++H
Sbjct: 1296 AIEFPYTLVQSIIYGIIVYSMIGFKWTAAKFFWYLFFMFFTFLYFTFYGMMAVGLTPSYH 1355
Query: 1122 IASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQDRLES 1181
+ASIVS+ FYG+WN+ SGFIIPR ++P+WWRW W P+AWTLYG ASQFGD+ ++
Sbjct: 1356 VASIVSSAFYGIWNLFSGFIIPRPKVPIWWRWYCWICPVAWTLYGLVASQFGDIMTPMDD 1415
Query: 1182 GETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNFQKR 1230
G VK F+ +Y+ FKH +LG VA V+ LFAF+F I LNFQKR
Sbjct: 1416 GTPVKIFVENYFDFKHSWLGVVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1464
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q7PC80|PDR1_ORYSJ Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1697 bits (4394), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 825/1260 (65%), Positives = 974/1260 (77%), Gaps = 42/1260 (3%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQ 60
+LALAG+L LK SG+VTYNGH M +FVPQRTAAYISQHD+HIGEMTVRETL+FSARCQ
Sbjct: 221 LLALAGRL-KDLKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRETLSFSARCQ 279
Query: 61 GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADT 120
GVGSR+DML EL+RREKAA I PDAD+D FMKA EGQE+N+ITDYILK+L L++CADT
Sbjct: 280 GVGSRFDMLTELTRREKAANIKPDADVDAFMKASAMEGQESNLITDYILKILGLEICADT 339
Query: 121 VVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILN 180
+VGD+M+RGISGGQRKRVTTGEMLVGPA+A FMDEISTGLDSSTTF IV SL Q HIL
Sbjct: 340 MVGDDMVRGISGGQRKRVTTGEMLVGPANAFFMDEISTGLDSSTTFQIVKSLRQTIHILG 399
Query: 181 GTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQ 240
GTA+ISLLQPAPE Y+LFDDIIL+SDG IVYQGP E+V +FF MGFKCP+RKG+ADFLQ
Sbjct: 400 GTAVISLLQPAPETYDLFDDIILLSDGHIVYQGPRENVLEFFELMGFKCPERKGVADFLQ 459
Query: 241 EVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTT 300
EVTSRKDQ+QYW ++D+PYR+V +KEF AFQSFH GR + +EL PFDK SHPAALTT
Sbjct: 460 EVTSRKDQKQYWAQHDKPYRYVPIKEFASAFQSFHTGRSIANELATPFDKSKSHPAALTT 519
Query: 301 RKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDG 360
+YGV ELLKA RE LL+KRNSFVYIFR Q+M ++ + MT+F RTKMHRDS+ DG
Sbjct: 520 SRYGVSAMELLKANIDRELLLIKRNSFVYIFRTIQLMTVSAMAMTVFFRTKMHRDSVADG 579
Query: 361 VIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIV 420
VI+ GALFF + I NG++E+ +TI KLPVF+KQRDL F+P+W Y +P+WILK P+S +
Sbjct: 580 VIFMGALFFAVMMIMLNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWILKSPMSFI 639
Query: 421 EVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTFGSLV 480
EV + FM+YYVIGFD N GRFFKQYLL+L V+QM++A+FR + R+++VAN FGS +
Sbjct: 640 EVGGFCFMSYYVIGFDPNVGRFFKQYLLMLAVSQMAAALFRFVGGAARNLIVANVFGSFM 699
Query: 481 LLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKILPNK--TKPL 538
LL+ VLGGF+L+RD + KWW WGYW SP+MYAQNA+ VNEFLG+SW K+L N + L
Sbjct: 700 LLIFMVLGGFILARDKVNKWWIWGYWISPMMYAQNAVSVNEFLGHSWDKVLNNSLSNETL 759
Query: 539 GIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTE 598
G++ L SRG F +A WYW+G GAL GFI+LF FTLAL++L P G S+ ISEE +
Sbjct: 760 GVQALMSRGIFPEAKWYWIGFGALLGFIMLFNILFTLALTYLKPDGKSQPSISEEELKEK 819
Query: 599 HDSRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIETDQPKNRGMVLPFEP 658
+ G + + T A+S++ S+ + + QP RGMVLPF P
Sbjct: 820 QANINGNVLDVDTMASSNNLAIVG-----------STGTGSEIADNSQPTQRGMVLPFTP 868
Query: 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDV 718
SLTF++I YSVDMPQEMK G+ +D+L LL GVSG FRPGVLTALMGV+G+GKTTLMDV
Sbjct: 869 LSLTFEDIKYSVDMPQEMKAHGIVEDRLELLKGVSGCFRPGVLTALMGVSGAGKTTLMDV 928
Query: 719 LAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSE 778
LAGRKT GYI GNI+ISGYPK QETF R+SGYCEQNDIHSP VTV ESLL+SAWLRL +
Sbjct: 929 LAGRKTGGYIEGNISISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKD 988
Query: 779 VNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 838
V+S TR+MF+EEVMELVEL PLR ALVGLPGVNGLS EQRKRLTIAVELVANPSIIFMDE
Sbjct: 989 VDSNTRKMFIEEVMELVELKPLRDALVGLPGVNGLSIEQRKRLTIAVELVANPSIIFMDE 1048
Query: 839 PTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA---------------- 882
PTSGLDARAAA+VMRTVRNTV+TGRTVVCTIHQPSIDIFEAFD
Sbjct: 1049 PTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPL 1108
Query: 883 ------------GIPGVSKIRDGYNPATWMLEVTAPSQEIALGVDFAAIYKSSELYRINK 930
GI GVSKI DGYNPATWMLEVT SQE AL VDF IY+ SEL++ NK
Sbjct: 1109 GHHSSELIKYFEGIQGVSKITDGYNPATWMLEVTTVSQEQALDVDFCDIYRKSELFQRNK 1168
Query: 931 ALIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHYTAVRFLFTIFISL 990
ALIQELS P PGS ELYF QY SF QC+ACLWKQH SY RNP Y A+R FT I+L
Sbjct: 1169 ALIQELSTPPPGSSELYFPTQYSQSFLIQCLACLWKQHLSYWRNPPYNAIRLFFTTVIAL 1228
Query: 991 IFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGM 1050
IFGT+FWD+G K + QDLFN MG MY AV F+GVLN SVQPVV +ER+VFYRE+ AGM
Sbjct: 1229 IFGTIFWDLGGKMGQSQDLFNAMGSMYAAVLFIGVLNGQSVQPVVSVERTVFYRERAAGM 1288
Query: 1051 YSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFG 1110
YS + YAF QV IE PY VQ+ YS+IVY+MIGF+WT AKFFW+LFFMFF+LLYFTF+G
Sbjct: 1289 YSALPYAFGQVAIEFPYTLVQSVIYSIIVYSMIGFQWTVAKFFWYLFFMFFTLLYFTFYG 1348
Query: 1111 MMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFAS 1170
MM V TP++H+ASIVS+ FY +WN+ +GF+I R PVWWRW W P+AWTLYG S
Sbjct: 1349 MMAVGLTPSYHVASIVSSAFYAIWNLFTGFVISRPATPVWWRWYCWICPVAWTLYGLIVS 1408
Query: 1171 QFGDVQDRLESGETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNFQKR 1230
Q+GD+ ++ G V F+ +Y+ FKH +LG VA V+ LFAF+F I LNFQKR
Sbjct: 1409 QYGDIVTPMDDGIPVNVFVENYFDFKHSWLGFVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1468
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O24367|TUR2_SPIPO Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1681 bits (4353), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 834/1259 (66%), Positives = 987/1259 (78%), Gaps = 47/1259 (3%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQ 60
+LALAGKLD++LK +G VTYNGH MHEFVPQRT+AYISQHD+HIGEMTVRETLAFS+RCQ
Sbjct: 201 LLALAGKLDNTLKVTGNVTYNGHGMHEFVPQRTSAYISQHDVHIGEMTVRETLAFSSRCQ 260
Query: 61 GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADT 120
GVG+RY+ML ELSRREK A I PD D+DV+MKAV EGQE+ V+TDYILK+L LD+CADT
Sbjct: 261 GVGTRYEMLTELSRREKEANIKPDPDVDVYMKAVAVEGQES-VVTDYILKILGLDICADT 319
Query: 121 VVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILN 180
+VGD M+RGISGGQ+KRVTTGEMLVGP+ ALFMDEISTGLDSSTTF IVNSL Q HIL
Sbjct: 320 MVGDGMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIVNSLRQSVHILG 379
Query: 181 GTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQ 240
GTALI+LLQPAPE Y+LFDDI+L+SDGQIVYQGP E+V +FF SMGFKCP+RKG+ADFLQ
Sbjct: 380 GTALIALLQPAPETYDLFDDILLLSDGQIVYQGPRENVLEFFESMGFKCPERKGVADFLQ 439
Query: 241 EVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTT 300
EVTSRKDQ+QYWVR +EPYRFV V EF AF+SFHVG KL +EL PFD+ +HPAALTT
Sbjct: 440 EVTSRKDQQQYWVRENEPYRFVPVNEFSEAFKSFHVGAKLHEELSTPFDRSRNHPAALTT 499
Query: 301 RKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDG 360
KYG+ K ELLKAC RE LLMKRNSFVYIF++ Q++ LA+I MT+F RTK+ R+ L D
Sbjct: 500 SKYGISKMELLKACIDREWLLMKRNSFVYIFKVVQLIVLALIAMTVFFRTKLPRNGLEDA 559
Query: 361 VIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIV 420
I+ GA+F L T FNG AE++M+IAKLPVFYKQRDL FYP WAYALP WILKIPIS V
Sbjct: 560 TIFFGAMFLGLVTHLFNGFAELAMSIAKLPVFYKQRDLLFYPPWAYALPTWILKIPISFV 619
Query: 421 EVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTFGSLV 480
E VW+ MTYYVIGFD N R F+ YLLL++++Q++S +FRL+AAVGR MVVA+TFG+
Sbjct: 620 ECGVWIAMTYYVIGFDPNVVRMFRHYLLLVLISQVASGLFRLLAAVGRDMVVADTFGAFA 679
Query: 481 LLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKILPNKTKPLGI 540
L+L VLGGF+++R+ IKK+W WGYW SPLMYAQNAI VNEFLG+SW K++ + LG
Sbjct: 680 QLVLLVLGGFIIAREKIKKFWIWGYWSSPLMYAQNAIAVNEFLGHSWNKLVDATGQTLGE 739
Query: 541 EVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTEHD 600
L +RG F D WYW+GVGAL G+++LF F F L L +L+P G + +SEE+ +
Sbjct: 740 RFLRNRGIFVDKNWYWIGVGALIGYMVLFNFLFILFLEWLDPLGKGQTTVSEEALQEKEA 799
Query: 601 SRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIETDQPKNRGMVLPFEPFS 660
+RTG V+L+T R ++S I D + +GMVLPF P S
Sbjct: 800 NRTGANVELAT-----------------RGSAATSDGGSVEIRKDGNRKKGMVLPFTPLS 842
Query: 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLA 720
+TFD + YSVDMPQEMK RGV +DKL+LL GVSGAFRPGVLTALMGV+G GKTTLMDVLA
Sbjct: 843 ITFDNVKYSVDMPQEMKDRGVTEDKLLLLKGVSGAFRPGVLTALMGVSGRGKTTLMDVLA 902
Query: 721 GRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVN 780
GRKT GYI G+I ISGYPKNQETF RISGYCEQNDIHSP+VTVYESLLYSAWLRL +EV+
Sbjct: 903 GRKTGGYIEGDIRISGYPKNQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPAEVD 962
Query: 781 SKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 840
K R+MFV+EVM+LVELN LR +LVGLPGV GLSTEQRKRLTIAVELVANPSIIFMDEPT
Sbjct: 963 EKQRKMFVDEVMDLVELNSLRGSLVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPT 1022
Query: 841 SGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD------------------- 881
SGLDARAAA+VMR VRNTVDTGRTVVCTIHQPSIDIFEAFD
Sbjct: 1023 SGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGR 1082
Query: 882 ---------AGIPGVSKIRDGYNPATWMLEVTAPSQEIALGVDFAAIYKSSELYRINKAL 932
I GV KI++ YNPATWMLEVT SQE LG++FA +Y++S+LY+ NK L
Sbjct: 1083 QSSHLIKYFESIDGVKKIKERYNPATWMLEVTTISQEEILGLNFAEVYRNSDLYKRNKDL 1142
Query: 933 IQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHYTAVRFLFTIFISLIF 992
I+ELS P PGSK+L+FA Q+ SF QC+ACLWKQH SY RNP YTA R FT+ I+LIF
Sbjct: 1143 IKELSTPPPGSKDLFFATQFSQSFVMQCLACLWKQHKSYWRNPSYTATRLFFTVVIALIF 1202
Query: 993 GTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYS 1052
GT+FWD+G K + DL N MG MY AV F+G+ N +VQP+VD+ER+VFYREK AGMYS
Sbjct: 1203 GTIFWDLGKKRSTSLDLINAMGSMYAAVLFIGIQNAQTVQPIVDVERTVFYREKAAGMYS 1262
Query: 1053 PMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMM 1112
+ YA+AQVLIE+P+I VQ Y L+VY+MIGF+WTAAKF W++FFMFF+ LYFT++GMM
Sbjct: 1263 ALPYAYAQVLIEVPHILVQTLLYGLLVYSMIGFDWTAAKFLWYMFFMFFTFLYFTYYGMM 1322
Query: 1113 LVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQF 1172
VA TPN IA+IV+ FY +WNI +GFIIPR RIP+WWRW YWA P+AWTLYG SQF
Sbjct: 1323 AVAMTPNSDIAAIVAAAFYAIWNIFAGFIIPRPRIPIWWRWYYWACPVAWTLYGLVVSQF 1382
Query: 1173 GDVQDRL-ESGETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNFQKR 1230
G+ D + + ETVK FLR + GF+HDFL V +V V LFA +FA I+ LNFQ+R
Sbjct: 1383 GEYTDTMSDVDETVKDFLRRFLGFRHDFLPVVGVMVVVFTVLFASIFAFSIKTLNFQRR 1441
|
May be a general defense protein (By similarity). Seems involved in turion (dormant buds) formation. Confers resistance to the diterpenoid antifungal agent sclareol. Spirodela polyrrhiza (taxid: 29656) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1230 | ||||||
| 255543331 | 1429 | ATP-binding cassette transporter, putati | 0.979 | 0.843 | 0.713 | 0.0 | |
| 255572799 | 1443 | ATP-binding cassette transporter, putati | 0.987 | 0.841 | 0.705 | 0.0 | |
| 297743362 | 3142 | unnamed protein product [Vitis vinifera] | 0.996 | 0.390 | 0.728 | 0.0 | |
| 224054164 | 1424 | pleiotropic drug resistance, ABC transpo | 0.972 | 0.839 | 0.718 | 0.0 | |
| 255546581 | 1449 | ATP-binding cassette transporter, putati | 0.993 | 0.843 | 0.698 | 0.0 | |
| 297743360 | 1451 | unnamed protein product [Vitis vinifera] | 0.995 | 0.843 | 0.722 | 0.0 | |
| 147816688 | 1471 | hypothetical protein VITISV_022715 [Viti | 0.996 | 0.833 | 0.715 | 0.0 | |
| 359482652 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.977 | 0.842 | 0.722 | 0.0 | |
| 356555825 | 1427 | PREDICTED: pleiotropic drug resistance p | 0.978 | 0.843 | 0.688 | 0.0 | |
| 255546579 | 1309 | ATP-binding cassette transporter, putati | 0.985 | 0.925 | 0.688 | 0.0 |
| >gi|255543331|ref|XP_002512728.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223547739|gb|EEF49231.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1864 bits (4828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 897/1258 (71%), Positives = 1035/1258 (82%), Gaps = 53/1258 (4%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQ 60
+LALAGKLD LK SG+VTYNGH+M+EFVPQRTAAYISQHD HIGEMTVRETLAF+ARCQ
Sbjct: 197 LLALAGKLDPKLKFSGRVTYNGHEMNEFVPQRTAAYISQHDTHIGEMTVRETLAFAARCQ 256
Query: 61 GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADT 120
GVG RY+M+ EL RREKA+ I PD DIDVFMKA+ EGQEANV+TDYILK+L L+VCAD
Sbjct: 257 GVGHRYEMISELLRREKASNIKPDPDIDVFMKAMATEGQEANVVTDYILKILGLEVCADI 316
Query: 121 VVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILN 180
+VG+EMLRG+SGGQRKRVTTGEMLVGPA ALFMDEISTGLDSSTT+ IVNS+ Q+ HILN
Sbjct: 317 MVGNEMLRGVSGGQRKRVTTGEMLVGPAKALFMDEISTGLDSSTTYQIVNSIKQYIHILN 376
Query: 181 GTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQ 240
GTA+ISLLQP PE YNLFDDIIL+SDGQIVYQGP E+V +FF MGFKCP+RKG+ADFLQ
Sbjct: 377 GTAVISLLQPPPETYNLFDDIILLSDGQIVYQGPRENVLEFFEYMGFKCPERKGVADFLQ 436
Query: 241 EVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTT 300
EVTSRKDQ QYW D+PY FVTV+EF AFQSF VGR+L EL PFDK SHPAALTT
Sbjct: 437 EVTSRKDQAQYWADKDKPYSFVTVREFAEAFQSFLVGRRLEAELSTPFDKSKSHPAALTT 496
Query: 301 RKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDG 360
+KYGVGK ELLKACFSRE LLMKRNSFVYIF+LTQ+ +A++ MT+FLRT+MHRDS+T+G
Sbjct: 497 KKYGVGKMELLKACFSREILLMKRNSFVYIFKLTQLTIMAMVAMTLFLRTEMHRDSVTNG 556
Query: 361 VIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIV 420
IY GALFF + I FNG++EIS+TIAKLPVFYKQR L FYP WA++LP WI KIPI++V
Sbjct: 557 GIYVGALFFSVVFIMFNGLSEISLTIAKLPVFYKQRSLLFYPPWAFSLPPWITKIPITLV 616
Query: 421 EVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTFGSLV 480
+V++WVF+TYYVIGFD N GRFFKQYLLL +V+QM+S +FR IAA GR+M+VANTFGS
Sbjct: 617 QVAIWVFLTYYVIGFDPNVGRFFKQYLLLALVSQMASGLFRFIAAAGRNMIVANTFGSFA 676
Query: 481 LLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKILPNKTKPLGI 540
LL LF LGGF+LSRD+IKKWW WGYW SPLMY QNAIVVNEFLGNSW K+LP+ T+ LGI
Sbjct: 677 LLALFALGGFILSRDNIKKWWIWGYWISPLMYGQNAIVVNEFLGNSWNKVLPDTTETLGI 736
Query: 541 EVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTEHD 600
+VL+SRGFFT AYWYW+GVGAL GF +L+ F FTLAL+FL P +A ISE+S S
Sbjct: 737 QVLESRGFFTHAYWYWIGVGALVGFTLLYNFFFTLALTFLGPLQKPQAVISEDSASNT-S 795
Query: 601 SRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIETDQPKNRGMVLPFEPFS 660
+TG +QLS+ E +E + K +GMVLPFEP S
Sbjct: 796 GKTGEVIQLSSVRT------------------------ELIVEENHQKQKGMVLPFEPHS 831
Query: 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLA 720
+TF++I YSVDMPQEMKR+G +D+L LL GVSGAFRPGVLTALMGV+G+GKTTLMDVLA
Sbjct: 832 ITFNDIRYSVDMPQEMKRQGATEDRLELLRGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 891
Query: 721 GRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVN 780
GRKT GYI G+I ISG+PK QETF RISGYCEQNDIHSP+VTVYESLLYS+WLRL EVN
Sbjct: 892 GRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPHVTVYESLLYSSWLRLPPEVN 951
Query: 781 SKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 840
S+TR+MF+EEVMELVEL PLRQALVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPT
Sbjct: 952 SETRKMFIEEVMELVELTPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1011
Query: 841 SGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA------------------ 882
SGLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD
Sbjct: 1012 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQEIYVGPLGR 1071
Query: 883 ----------GIPGVSKIRDGYNPATWMLEVTAPSQEIALGVDFAAIYKSSELYRINKAL 932
I GV I+DGYNPATWMLEV++ +QE+ LG+DFAAIYK+SELYR NKAL
Sbjct: 1072 HSCQLIKYFEAIEGVPDIKDGYNPATWMLEVSSSAQEMVLGLDFAAIYKNSELYRRNKAL 1131
Query: 933 IQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHYTAVRFLFTIFISLIF 992
I+ELS P GS +LYF QY SFFTQCMACLWKQHWSY RNP YTAVRFLFT I+L+F
Sbjct: 1132 IEELSTPPLGSNDLYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFLFTTVIALMF 1191
Query: 993 GTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYS 1052
GTMFWD+G+KTTK+QDLFN MG MY A+ FLG+ N SSVQPVV +ER+VFYRE+ AGMYS
Sbjct: 1192 GTMFWDLGSKTTKRQDLFNAMGSMYAAIVFLGIQNASSVQPVVAVERTVFYRERAAGMYS 1251
Query: 1053 PMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMM 1112
P+ YAFAQV+IE+PYIF+QAA Y LIVYAMIGFEW+AAKFFW+LFFM+F+LL++T++GMM
Sbjct: 1252 PLPYAFAQVVIELPYIFLQAAVYGLIVYAMIGFEWSAAKFFWYLFFMYFTLLFYTYYGMM 1311
Query: 1113 LVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQF 1172
VA TPN +ASIVS+ FY +WN+ SGFIIPR RIPVWWRW W P+A+TLYG +SQF
Sbjct: 1312 AVAVTPNQQVASIVSSAFYSIWNLFSGFIIPRPRIPVWWRWYAWTCPVAYTLYGLVSSQF 1371
Query: 1173 GDVQDRLESGETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNFQKR 1230
GD++ LESGETV+ F+RSY+ FKH+ LGAVAA VF +LFAF FA I+ NFQ+R
Sbjct: 1372 GDIKHTLESGETVEDFVRSYFDFKHELLGAVAAAVFGFATLFAFTFAFSIKFFNFQRR 1429
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255572799|ref|XP_002527332.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223533332|gb|EEF35084.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1862 bits (4823), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 890/1261 (70%), Positives = 1028/1261 (81%), Gaps = 46/1261 (3%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQ 60
+LALAGKLD +LK SG VTYNGH M+EF+PQ TAAYISQHD+HIGEMTVRETL+FS RCQ
Sbjct: 198 LLALAGKLDPNLKFSGNVTYNGHGMNEFIPQSTAAYISQHDLHIGEMTVRETLSFSVRCQ 257
Query: 61 GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADT 120
GVG+R DMLVELSRREKAA I PD DIDVFMKAV EGQE NV+TDY+LK+L L+VCADT
Sbjct: 258 GVGTRNDMLVELSRREKAANIKPDPDIDVFMKAVATEGQETNVVTDYVLKILGLEVCADT 317
Query: 121 VVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILN 180
+VGDEMLRGISGGQRKRVTTGEMLVGPA ALFMDEISTGLDSSTT+ IVNSL Q HIL+
Sbjct: 318 LVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLKQTIHILD 377
Query: 181 GTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQ 240
GTA+ISLLQPAPE Y+LFDDIIL+SDGQIVYQGP EHV +FF MGFKCP+RKG+ADFLQ
Sbjct: 378 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREHVLEFFEYMGFKCPERKGVADFLQ 437
Query: 241 EVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTT 300
EVTS+ DQ+QYWV+ D+PY FVTV+EF AFQS+ VG+ +G EL PFDK SHPAAL
Sbjct: 438 EVTSKNDQKQYWVQKDQPYSFVTVQEFSEAFQSYDVGQIIGQELSTPFDKSKSHPAALAA 497
Query: 301 RKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDG 360
RKYGV K ELLKACF+RE+LLMKRNSFVYIF+LTQ++ +A+I MT+FLRT+MHR+ LTD
Sbjct: 498 RKYGVDKMELLKACFAREYLLMKRNSFVYIFKLTQLVVMAIISMTLFLRTEMHREDLTDA 557
Query: 361 VIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIV 420
+Y GALFF L I FNGM+E+SMTIAKLPVFYKQRDL+FYP WAYALP WILKIPI+
Sbjct: 558 GVYLGALFFSLIAIMFNGMSELSMTIAKLPVFYKQRDLQFYPPWAYALPTWILKIPITFF 617
Query: 421 EVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTFGSLV 480
EV VWVF+TYYVIGFD N R FKQY LLLIVNQM+S +FR IAAVGR+M+VANTFGS
Sbjct: 618 EVGVWVFITYYVIGFDPNVERLFKQYFLLLIVNQMASGLFRFIAAVGRNMIVANTFGSFA 677
Query: 481 LLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKILPNKTK--PL 538
LL +F LGG VLSRDDIKKWW WGYW SP+MY QNA+V NEFLG SW + N T L
Sbjct: 678 LLTVFALGGIVLSRDDIKKWWTWGYWISPMMYGQNALVANEFLGESWNHVPANSTSTDSL 737
Query: 539 GIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTE 598
G++ + SRGFF AYWYW+G+GALTGF ILF FTLAL+ LNP+ A IS+E E
Sbjct: 738 GVQFIKSRGFFPHAYWYWIGIGALTGFTILFNLCFTLALTHLNPYEKPHAVISDEP---E 794
Query: 599 HDSRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIETDQPKNRGMVLPFEP 658
RTGG +QLS N SSH T +E+ +R T E +Q K +GMVLPFEP
Sbjct: 795 RSDRTGGAIQLS--QNGSSHRTITENGVGIR----------MTDEANQNKKKGMVLPFEP 842
Query: 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDV 718
S+TF+++ YSVDMPQEMK +G+ DDKLVLL GVSGAF+PGVLTALMGV+G+GKTTLMDV
Sbjct: 843 HSITFNDVMYSVDMPQEMKSQGIADDKLVLLKGVSGAFKPGVLTALMGVSGAGKTTLMDV 902
Query: 719 LAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSE 778
LAGRKT GYI G+I ISGYPK Q+TF RISGYCEQNDIHSP+VTVYESL+YSAWLRL+ E
Sbjct: 903 LAGRKTGGYIEGDIRISGYPKKQDTFARISGYCEQNDIHSPHVTVYESLIYSAWLRLAPE 962
Query: 779 VNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 838
V+ +TR+MFV EVMELVELNPLRQALVGLPGVNGLSTEQRKRLTI+VELVANPSIIFMDE
Sbjct: 963 VDPETRKMFVNEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTISVELVANPSIIFMDE 1022
Query: 839 PTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD----------------- 881
PTSGLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSID+FEAFD
Sbjct: 1023 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDLFEAFDELFLMKRGGEEIYVGPL 1082
Query: 882 -----------AGIPGVSKIRDGYNPATWMLEVTAPSQEIALGVDFAAIYKSSELYRINK 930
I G SK++DGYNPATWMLEVT+ +QE++LGVDFA IYK+SELYR NK
Sbjct: 1083 GRHSCHMIDYFEVIEGASKVKDGYNPATWMLEVTSSAQELSLGVDFATIYKNSELYRRNK 1142
Query: 931 ALIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHYTAVRFLFTIFISL 990
A+I+ELS PGSK+LYF QY SF TQC+ACLWKQ SY RNP YTAVRFLFT FI+L
Sbjct: 1143 AIIKELSTSVPGSKDLYFPTQYSQSFLTQCIACLWKQRLSYWRNPPYTAVRFLFTTFIAL 1202
Query: 991 IFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGM 1050
+FGTMFWD+G+KT QQD+FN+ G MY AV FLG N +SVQPVV +ER+VFYRE+ AGM
Sbjct: 1203 MFGTMFWDLGSKTRTQQDIFNSAGSMYAAVVFLGTQNAASVQPVVAIERTVFYRERAAGM 1262
Query: 1051 YSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFG 1110
YS + YA+AQVL+EIPYIF QA Y L+ Y+MIGFEWTAAKFFW++FFM+F+L+YFT++G
Sbjct: 1263 YSALPYAYAQVLVEIPYIFAQAVVYGLLTYSMIGFEWTAAKFFWYIFFMYFTLMYFTYYG 1322
Query: 1111 MMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFAS 1170
MM VA TPNHHIAS+VS+ FYG+WN+ SGFI+PRTR+PVWWRW YW P++WTLYG S
Sbjct: 1323 MMAVAVTPNHHIASVVSSAFYGIWNLFSGFIVPRTRMPVWWRWYYWVCPVSWTLYGLIGS 1382
Query: 1171 QFGDVQDRLESG-ETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNFQK 1229
QF D++D E G +TV+ F+R YYG +HDFLG VAAV+ LFAF+FA+ I+ NFQ+
Sbjct: 1383 QFSDIKDAFEGGSQTVEDFVREYYGIRHDFLGVVAAVIVGTTVLFAFIFAVSIKSFNFQR 1442
Query: 1230 R 1230
R
Sbjct: 1443 R 1443
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743362|emb|CBI36229.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1857 bits (4811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 921/1264 (72%), Positives = 1044/1264 (82%), Gaps = 38/1264 (3%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQ 60
+LAL+GKLDSSLK +GKVTYNGH M+EFVPQRTA YISQHD HIGEMTVRETLAFSARCQ
Sbjct: 1883 LLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIGEMTVRETLAFSARCQ 1942
Query: 61 GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADT 120
GVG RYDML ELSRREKAA I PD DIDVFMKAV EGQ+ NVITDY LK+L L+VCADT
Sbjct: 1943 GVGDRYDMLAELSRREKAANIKPDPDIDVFMKAVATEGQKENVITDYTLKILGLEVCADT 2002
Query: 121 VVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILN 180
+VGD+M+RGISGGQRKRVTTGEMLVGP+ ALFMDEISTGLDSSTT+ IVNSL Q HILN
Sbjct: 2003 LVGDQMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTYQIVNSLRQTIHILN 2062
Query: 181 GTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQ 240
GTALISLLQPAPE Y+LFDDIIL+SD QIVYQGP E V FF SMGF+CP+RKG+ADFLQ
Sbjct: 2063 GTALISLLQPAPETYDLFDDIILLSDSQIVYQGPREDVLDFFESMGFRCPERKGVADFLQ 2122
Query: 241 EVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTT 300
EVTSRKDQ+QYW R DEPY FVTVKEF AFQSFH+GRKLG EL PFDK SHPAAL T
Sbjct: 2123 EVTSRKDQQQYWARKDEPYSFVTVKEFAEAFQSFHIGRKLGHELATPFDKTKSHPAALKT 2182
Query: 301 RKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDG 360
KYGV KKELL AC SRE+LLMKRNSFVYIF+LTQ++ +A I MTIFLRT+MH++S DG
Sbjct: 2183 EKYGVRKKELLDACISREYLLMKRNSFVYIFKLTQLIIMAAISMTIFLRTEMHKNSTDDG 2242
Query: 361 VIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIV 420
IYTGALFF + I FNGM+E++MTIAKLPVFYKQR L FYP+WAYALP+WILKIPI+ V
Sbjct: 2243 SIYTGALFFTVVMIMFNGMSELAMTIAKLPVFYKQRGLLFYPAWAYALPSWILKIPITFV 2302
Query: 421 EVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTFGSLV 480
EV+VWVFM+YYVIGFD N GR FKQYLLL++VNQM+SA+FR IAA GR+M+VANTFGS
Sbjct: 2303 EVAVWVFMSYYVIGFDPNVGRLFKQYLLLVLVNQMASALFRFIAAAGRNMIVANTFGSFS 2362
Query: 481 LLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSW-KKILPNKTKPLG 539
LLLLF LGGFVLSR+++KKWW WGYW SPLMYAQNAIVVNEFLG SW K + T+ LG
Sbjct: 2363 LLLLFALGGFVLSRENVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSKNSSTDSTESLG 2422
Query: 540 IEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTEH 599
+ VL SRGFFT+AYWYW+G GAL GFI++F F +T+AL++LN F +A I+EES+
Sbjct: 2423 VAVLKSRGFFTEAYWYWIGAGALLGFILVFNFCYTVALTYLNAFEKPQAVITEESE---- 2478
Query: 600 DSRTGGTVQLSTCANSSSHITRS-ESRDYVRRRNSSSQSR---ETTIETDQPKNRGMVLP 655
+S+TGG ++LS+ S T S E RD + R SS+ S E E + +GMVLP
Sbjct: 2479 NSKTGGKIELSSHRRGSIDQTASTERRDEIGRSISSTSSSVRAEAIAEARRNNKKGMVLP 2538
Query: 656 FEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTL 715
F+P S+TFD+I YSVDMP+EMK +GV +D+L LL GVSGAFRPGVLTALMGV+G+GKTTL
Sbjct: 2539 FQPLSITFDDIRYSVDMPEEMKSQGVLEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTL 2598
Query: 716 MDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRL 775
MDVLAGRKT GYI GNI ISGYPK QETF RISGYCEQNDIHSP+VT++ESLLYSAWLRL
Sbjct: 2599 MDVLAGRKTGGYIEGNINISGYPKKQETFARISGYCEQNDIHSPHVTIHESLLYSAWLRL 2658
Query: 776 SSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 835
++V+SKTR+MF+EEVMELVEL PL+ +LVGLPGVNGLSTEQRKRLTIAVELVANPSIIF
Sbjct: 2659 PADVDSKTRKMFIEEVMELVELTPLKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 2718
Query: 836 MDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA------------- 882
MDEPTSGLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD
Sbjct: 2719 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQEIYV 2778
Query: 883 ---------------GIPGVSKIRDGYNPATWMLEVTAPSQEIALGVDFAAIYKSSELYR 927
GI GVSKI+DGYNPATWMLEVT+ +QE LGVDF IYK+S+LYR
Sbjct: 2779 GPLGRHSSHLIKYFQGIEGVSKIKDGYNPATWMLEVTSSAQEFLLGVDFTEIYKNSDLYR 2838
Query: 928 INKALIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHYTAVRFLFTIF 987
NK LI+ELS+PAPGSK+LYF QY SFFTQCMACLWKQ SY RNP YTAVRF FT F
Sbjct: 2839 RNKDLIKELSQPAPGSKDLYFPTQYSQSFFTQCMACLWKQRRSYWRNPPYTAVRFFFTTF 2898
Query: 988 ISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKG 1047
I+LIFGTMFWD+GTK KQQDL N MG MY AV FLGV N SSVQPVV +ER+VFYRE+
Sbjct: 2899 IALIFGTMFWDLGTKRKKQQDLSNAMGSMYAAVLFLGVQNSSSVQPVVAVERTVFYRERA 2958
Query: 1048 AGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFT 1107
AGMYS M YAFAQ L+EIPY+F QA Y +IVYAMIGFEWTAAKFFW+LFFMFF+LLYFT
Sbjct: 2959 AGMYSAMPYAFAQALVEIPYVFAQAVVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLLYFT 3018
Query: 1108 FFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGF 1167
F+GMM VA TPN HIA+IV+ FYGLWN+ SGFI+PRTRIPVWWRW YWA P+AWTLYG
Sbjct: 3019 FYGMMAVAATPNQHIAAIVAAAFYGLWNLFSGFIVPRTRIPVWWRWYYWACPVAWTLYGL 3078
Query: 1168 FASQFGDVQDRLE-SGETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLN 1226
SQFGD+QDR E +G+TV+Q+L Y+GF+HDFLG VAAV+ LF F+FA I+ N
Sbjct: 3079 VTSQFGDIQDRFEDTGDTVEQYLNDYFGFEHDFLGVVAAVIVGFTVLFLFIFAFAIKAFN 3138
Query: 1227 FQKR 1230
FQ+R
Sbjct: 3139 FQRR 3142
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224054164|ref|XP_002298123.1| pleiotropic drug resistance, ABC transporter family protein [Populus trichocarpa] gi|222845381|gb|EEE82928.1| pleiotropic drug resistance, ABC transporter family protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1855 bits (4805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 905/1259 (71%), Positives = 1036/1259 (82%), Gaps = 63/1259 (5%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQ 60
+LALAGKLD +LK SG+VTYNGH+M EFVPQRTAAYISQHD+HIGEMTVRETLAFSARCQ
Sbjct: 200 LLALAGKLDHALKFSGRVTYNGHEMDEFVPQRTAAYISQHDLHIGEMTVRETLAFSARCQ 259
Query: 61 GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADT 120
GVGSRYDML ELSRREK A I PD DIDVFMKA EGQE +V+ DYILKVL L+VCADT
Sbjct: 260 GVGSRYDMLAELSRREKEAGIKPDPDIDVFMKAAATEGQEDSVVIDYILKVLGLEVCADT 319
Query: 121 VVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILN 180
+VGDEMLRGISGGQ+KRVTTGEMLVGPA ALFMDEISTGLDSSTT+ IVNS+ Q+ IL
Sbjct: 320 LVGDEMLRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTYQIVNSIKQYVQILE 379
Query: 181 GTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQ 240
GTALISLLQPAPE Y+LFDDIIL+SDG+IVYQGP EHV +FF MGFKCP RKG+ADFLQ
Sbjct: 380 GTALISLLQPAPETYDLFDDIILLSDGEIVYQGPREHVLRFFEYMGFKCPARKGVADFLQ 439
Query: 241 EVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTT 300
EVTSRKDQ QYW R D PYRFVTVKEF AF SFH G++LG+EL +PFDK +HPAALTT
Sbjct: 440 EVTSRKDQMQYWARRDVPYRFVTVKEFAEAFYSFHEGKRLGNELAVPFDKSKNHPAALTT 499
Query: 301 RKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDG 360
+KYGV K+EL KA FSRE LLMKRNSFVY F+ Q+ +AVI MT+FLRT+MHRDS+TDG
Sbjct: 500 KKYGVNKRELCKASFSREFLLMKRNSFVYAFKFIQLTIVAVIAMTLFLRTEMHRDSVTDG 559
Query: 361 VIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIV 420
IY GA+FFI+ I FNGMAEISMT+AKLPVFYKQRDL F+P+W YALP WILKIPI+ +
Sbjct: 560 GIYVGAMFFIVVVIMFNGMAEISMTLAKLPVFYKQRDLLFFPAWIYALPTWILKIPITFI 619
Query: 421 EVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTFGSLV 480
EV++ VF+TY+VIGFD N GR FK YL+LL+ NQM+S +FR IAAVGR+MVVANTFGS V
Sbjct: 620 EVAIMVFITYFVIGFDPNVGRLFKHYLVLLLTNQMASGLFRTIAAVGRNMVVANTFGSFV 679
Query: 481 LLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKILPNKTKPLGI 540
LLLLFVLGGFVLSRDDIKKWW WG+W SP+MYAQNA+VVNEFLG SW +LPN T+PLGI
Sbjct: 680 LLLLFVLGGFVLSRDDIKKWWIWGFWTSPMMYAQNAVVVNEFLGKSWNHVLPNSTEPLGI 739
Query: 541 EVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGT-SKAFISEESQSTEH 599
EVL SRGFFT+AYWYWL V AL GF +L+ F + LAL+FLNP G +A ISEE QS
Sbjct: 740 EVLKSRGFFTEAYWYWLAVAALFGFTLLYNFLYILALAFLNPLGKPQQAGISEEPQS--- 796
Query: 600 DSRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIETDQPKNRGMVLPFEPF 659
N+ I RS+S SR T K RG+++PFEP
Sbjct: 797 --------------NNVDEIGRSKS------------SRFTC-----NKQRGVIIPFEPH 825
Query: 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVL 719
S+TFD++ YSVDMPQEMK GVH+DKLVLL GVSGAFRPGVLTALMG++G+GKTT+MDVL
Sbjct: 826 SITFDKVMYSVDMPQEMKSHGVHEDKLVLLKGVSGAFRPGVLTALMGISGAGKTTMMDVL 885
Query: 720 AGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEV 779
AGRKT GYI GNITISGYPK QETF RISGYCEQNDIHSP++TVYESLLYSAWLRL +EV
Sbjct: 886 AGRKTGGYIEGNITISGYPKKQETFARISGYCEQNDIHSPHITVYESLLYSAWLRLPTEV 945
Query: 780 NSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 839
+ +TR+MFVEEVMELVELNPLRQALVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEP
Sbjct: 946 DIETRKMFVEEVMELVELNPLRQALVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEP 1005
Query: 840 TSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD------------------ 881
TSGLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD
Sbjct: 1006 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGQEIYVGPLG 1065
Query: 882 ----------AGIPGVSKIRDGYNPATWMLEVTAPSQEIALGVDFAAIYKSSELYRINKA 931
GI GV+KI+DGYNPATWMLEVT+ ++E+ALGVDFA IY+SSEL+R N+A
Sbjct: 1066 RLSCHLIKYFEGIEGVNKIKDGYNPATWMLEVTSTAEELALGVDFAEIYRSSELFRRNRA 1125
Query: 932 LIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHYTAVRFLFTIFISLI 991
LI++LS PAPGSK+LYF+ QY SFFTQC+ACLWKQHWSY RNP YTA+RFL T I LI
Sbjct: 1126 LIKDLSTPAPGSKDLYFSTQYSRSFFTQCLACLWKQHWSYWRNPPYTAIRFLSTTVIGLI 1185
Query: 992 FGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMY 1051
FGTMFWD+G+K TK+QDLFN MG MY AV FLGV N +SVQPVV +ER+VFYRE+ AGMY
Sbjct: 1186 FGTMFWDIGSKITKRQDLFNAMGSMYTAVLFLGVQNAASVQPVVAVERTVFYRERAAGMY 1245
Query: 1052 SPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGM 1111
S + YAFAQVLIE+PYIFVQAA Y +IVY+MIGF WT +KFFW+L+FM+F+LLYFTF+GM
Sbjct: 1246 SALPYAFAQVLIELPYIFVQAAVYGVIVYSMIGFGWTISKFFWYLYFMYFTLLYFTFYGM 1305
Query: 1112 MLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQ 1171
M VA +PNH IAS++S FYG+WN+ SGF+IPR+R+P+WWRW W P+ WTLYG ASQ
Sbjct: 1306 MAVAVSPNHQIASVISAAFYGIWNVFSGFVIPRSRMPLWWRWYSWICPVFWTLYGLVASQ 1365
Query: 1172 FGDVQDRLESGETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNFQKR 1230
FGD++DRLE+GETV+QF+ Y FKHDFLG VAAV+ LFA FA+ I++ NFQ+R
Sbjct: 1366 FGDMKDRLETGETVEQFVTIYLDFKHDFLGVVAAVILGFTVLFAITFAISIKLFNFQRR 1424
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546581|ref|XP_002514350.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223546806|gb|EEF48304.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1853 bits (4800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 883/1264 (69%), Positives = 1030/1264 (81%), Gaps = 42/1264 (3%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQ 60
+LALAGKL LK SG+VTYNGH M EFVPQRT+AYISQ+DIHIGEMTVRETLAFSARCQ
Sbjct: 194 LLALAGKLTKDLKFSGRVTYNGHGMEEFVPQRTSAYISQYDIHIGEMTVRETLAFSARCQ 253
Query: 61 GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADT 120
GVGSRY+ML+EL+RREK A I PD DID++MKA EGQEANV+TDYILK+L L++CADT
Sbjct: 254 GVGSRYEMLMELARREKEANIKPDPDIDIYMKAAALEGQEANVVTDYILKILGLELCADT 313
Query: 121 VVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILN 180
+VGDEM RGISGGQ+KRVTTGEMLVGPA ALFMDEISTGLDS+TTF IVNSL Q HIL+
Sbjct: 314 LVGDEMARGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSTTTFQIVNSLRQSVHILS 373
Query: 181 GTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQ 240
GTALI+LLQPAPE + LFDDIIL+SDGQIVYQGP E+V FF MGFKCP+RKG+ADFLQ
Sbjct: 374 GTALIALLQPAPETFELFDDIILLSDGQIVYQGPRENVLDFFEYMGFKCPERKGVADFLQ 433
Query: 241 EVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTT 300
EVTSRKDQEQYW D+PY FV+V EF AFQSFH+GRKLGDEL PFDK +HP +LTT
Sbjct: 434 EVTSRKDQEQYWAHKDQPYLFVSVNEFSEAFQSFHIGRKLGDELATPFDKSKAHPDSLTT 493
Query: 301 RKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDG 360
+KYGV KKEL KAC SRE+LLMKRNSFVYIF++TQ++ L I MT+FLRT+MHR++ TDG
Sbjct: 494 KKYGVSKKELFKACISREYLLMKRNSFVYIFKMTQLIILGFITMTLFLRTEMHRNTETDG 553
Query: 361 VIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIV 420
+Y GALFF +TTI FNG +E++MTI KLPVFYKQRDL FYPSWAYALP WILKIPI+ V
Sbjct: 554 GVYLGALFFTVTTIMFNGFSELAMTILKLPVFYKQRDLLFYPSWAYALPTWILKIPITFV 613
Query: 421 EVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTFGSLV 480
EV+VWV MTYYVIGFD N RFFKQYL+LLI NQM+SA+FRL AA+GR+++VANT G+
Sbjct: 614 EVAVWVVMTYYVIGFDPNIQRFFKQYLILLITNQMASALFRLTAALGRNIIVANTVGAFA 673
Query: 481 LLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKILPNKTKPLGI 540
+L VLGGFV+SRD++KKWW WGYW SP+MY QNAI VNEFLG+SW PN TKPLG+
Sbjct: 674 MLTALVLGGFVISRDNVKKWWIWGYWFSPMMYVQNAISVNEFLGSSWNHFPPNSTKPLGV 733
Query: 541 EVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTEHD 600
+L SRG F +AYWYW+G GALTG+I LF F FTLAL +L+PFG +A IS+E+ S +
Sbjct: 734 TLLKSRGLFPEAYWYWIGFGALTGYIFLFNFLFTLALKYLDPFGKPQAIISKEAYSEKTA 793
Query: 601 SRTGGTVQLSTCAN------SSSHITRSESRDYVRRRNSSSQSRETTIETDQPKNRGMVL 654
RTG ++LS+ S+SH S SR R +S S + E + RGMVL
Sbjct: 794 VRTGEFIELSSKEKNFQERGSASHRVAS-SRTSSARVSSLSNAFENS-------KRGMVL 845
Query: 655 PFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTT 714
PF+P S+TF ++ Y+V MPQEMK +G+ +D+L LL GVSGAFRPGVLTALMGV+G+GKTT
Sbjct: 846 PFQPLSITFADVRYAVQMPQEMKTQGITEDRLELLKGVSGAFRPGVLTALMGVSGAGKTT 905
Query: 715 LMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLR 774
LMDVLAGRKT GYI GNITISGYPK QETF RISGYCEQ DIHSP+VTVYESLLYSAWLR
Sbjct: 906 LMDVLAGRKTGGYIEGNITISGYPKKQETFARISGYCEQTDIHSPHVTVYESLLYSAWLR 965
Query: 775 LSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSII 834
L EV+S TR MFVEEVMELVEL LR+ALVGLPGVNGLS EQRKRLT+AVELVANPSII
Sbjct: 966 LPPEVDSDTRNMFVEEVMELVELTSLREALVGLPGVNGLSVEQRKRLTVAVELVANPSII 1025
Query: 835 FMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD------------- 881
FMDEPTSGLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIF+AFD
Sbjct: 1026 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLLKRGGEEIY 1085
Query: 882 ---------------AGIPGVSKIRDGYNPATWMLEVTAPSQEIALGVDFAAIYKSSELY 926
I G+ KI+DGYNPATWMLEVT +QE+ALGVDF+ IYK+SELY
Sbjct: 1086 VGPVGRHACHLIKYFEDIEGIPKIKDGYNPATWMLEVTTTAQEVALGVDFSDIYKNSELY 1145
Query: 927 RINKALIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHYTAVRFLFTI 986
R NKALI+ELS+P PGSK+LYF QY SF TQCMACLWKQHWSY RNP YTAVR +F
Sbjct: 1146 RKNKALIKELSRPLPGSKDLYFPTQYSKSFTTQCMACLWKQHWSYWRNPPYTAVRLVFAT 1205
Query: 987 FISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREK 1046
FI+L+FGT+FW +GTK +++QD+FN MG MY AV FLG N ++VQPVV +ER+VFYRE+
Sbjct: 1206 FIALMFGTIFWKLGTKRSRRQDIFNAMGSMYAAVLFLGFHNSTAVQPVVAIERTVFYRER 1265
Query: 1047 GAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYF 1106
AGMYS +AYAF QV+IE+PYI +Q Y +IVYAM+GFEWT +KFFW+LFFM+F+LLYF
Sbjct: 1266 AAGMYSALAYAFGQVMIEVPYILIQTIIYGVIVYAMVGFEWTISKFFWYLFFMYFTLLYF 1325
Query: 1107 TFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYG 1166
TF+GMM VA TPNH+IA+IVS+ FY +WNI SGFI+PRTRIP+WWRW YWA PIAWTLYG
Sbjct: 1326 TFYGMMNVAITPNHNIAAIVSSAFYAIWNIFSGFIVPRTRIPIWWRWYYWACPIAWTLYG 1385
Query: 1167 FFASQFGDVQDRLESGETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLN 1226
ASQFGD+++ L++GETV+ FLRSY+GF+HDF+G VA V+ + LF F+FA IR N
Sbjct: 1386 LVASQFGDIKEELDTGETVEHFLRSYFGFQHDFVGIVAVVLVGICVLFGFLFAFSIRTFN 1445
Query: 1227 FQKR 1230
FQ+R
Sbjct: 1446 FQRR 1449
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743360|emb|CBI36227.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1842 bits (4771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 913/1263 (72%), Positives = 1037/1263 (82%), Gaps = 39/1263 (3%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQ 60
+LAL+GKLDSSLK +GKVTYNGH M+EFVPQRTA YISQHD HIGEMTVRETLAFSARCQ
Sbjct: 195 LLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIGEMTVRETLAFSARCQ 254
Query: 61 GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADT 120
GVG RYDML ELSRREKAA I PD DIDVFMKA EGQ+ NVITDY LK+L L+VCADT
Sbjct: 255 GVGDRYDMLAELSRREKAANIKPDPDIDVFMKAAATEGQKENVITDYTLKILGLEVCADT 314
Query: 121 VVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILN 180
+VGD+M+RGISGGQRKRVTTGEMLVGP+ ALFMDEISTGLDSSTT+ IVNSL Q HILN
Sbjct: 315 LVGDQMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTYQIVNSLRQTIHILN 374
Query: 181 GTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQ 240
GTALISLLQPAPE Y+LFDDIIL+SD QIVYQGP E V FF SMGF+CP+RKG+ADFLQ
Sbjct: 375 GTALISLLQPAPETYDLFDDIILLSDSQIVYQGPREDVLDFFESMGFRCPERKGVADFLQ 434
Query: 241 EVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTT 300
EVTSRKDQ+QYW R DEPY FVTVK+F AFQSFH GRK+GDEL PFDK SHPAAL T
Sbjct: 435 EVTSRKDQQQYWARKDEPYSFVTVKQFAEAFQSFHSGRKVGDELATPFDKTKSHPAALKT 494
Query: 301 RKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDG 360
KYGV KKELL AC SRE+ LMKRNSFVYI +LTQ++ +A I MTIFLRT+MH++S DG
Sbjct: 495 EKYGVRKKELLDACISREYWLMKRNSFVYILQLTQLIIMAAISMTIFLRTEMHKNSTDDG 554
Query: 361 VIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIV 420
IY GALFF + I FNGM+E++MTIAKLPVFYKQR L FYP+WAYAL +WILKIPI+ V
Sbjct: 555 SIYMGALFFTVVMIMFNGMSELAMTIAKLPVFYKQRGLLFYPAWAYALSSWILKIPITFV 614
Query: 421 EVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTFGSLV 480
EV+VWVFM+YYVIGFD N GR FKQYLLL++VNQM+SA+FR IAA GR+M+VANTFGS
Sbjct: 615 EVAVWVFMSYYVIGFDPNVGRLFKQYLLLVLVNQMASALFRFIAAAGRNMIVANTFGSFS 674
Query: 481 LLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSW-KKILPNKTKPLG 539
LLLLF LGGFVLSR+++KKWW WGYW SPLMYAQNAIVVNEFLG SW K N T+ LG
Sbjct: 675 LLLLFALGGFVLSRENVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSKNSSTNSTESLG 734
Query: 540 IEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTEH 599
+ VL SRGFFT+AYWYW+G GAL GFI++F F +T+AL++LN F +A I+EES+
Sbjct: 735 VAVLKSRGFFTEAYWYWIGAGALLGFILVFNFCYTVALTYLNAFEKPQAVITEESE---- 790
Query: 600 DSRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSR---ETTIETDQPKNRGMVLPF 656
+S+TGG ++LS+ S I ++ S D + R SS+ S E E + RGMVLPF
Sbjct: 791 NSKTGGKIELSSHRRGS--IDQTASTDEIGRSISSTSSSVRAEAIAEARRNTKRGMVLPF 848
Query: 657 EPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLM 716
+P S+TFD+I YSVDMP+EMK +GV +D+L LL GVSGAFRPGVLTALMGV+G+GKTTLM
Sbjct: 849 QPLSITFDDIRYSVDMPEEMKSQGVLEDRLKLLKGVSGAFRPGVLTALMGVSGAGKTTLM 908
Query: 717 DVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS 776
DVLAGRKT GYI GNI ISGYPK QETFTRISGYCEQNDIHSP+VT++ESLLYSAWLRL
Sbjct: 909 DVLAGRKTGGYIEGNINISGYPKKQETFTRISGYCEQNDIHSPHVTIHESLLYSAWLRLP 968
Query: 777 SEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 836
++V+SKTR+MF+E+VMELVEL PL+ +LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM
Sbjct: 969 ADVDSKTRKMFIEKVMELVELTPLKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1028
Query: 837 DEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD--------------- 881
DEPTSGLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD
Sbjct: 1029 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQEIYVG 1088
Query: 882 -------------AGIPGVSKIRDGYNPATWMLEVTAPSQEIALGVDFAAIYKSSELYRI 928
GI GVSKI+ GYNPATWMLEVT +QE LGVDF IYK+S LYR
Sbjct: 1089 LLGRHSSCLIKYFEGIEGVSKIKGGYNPATWMLEVTTSAQEFLLGVDFTEIYKNSNLYRR 1148
Query: 929 NKALIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHYTAVRFLFTIFI 988
NK LI+ELS+PAPGSK+LYF QY SFFTQCMACLWKQ SY RNP YTAVRF FT FI
Sbjct: 1149 NKDLIKELSQPAPGSKDLYFPTQYSQSFFTQCMACLWKQRRSYWRNPPYTAVRFFFTTFI 1208
Query: 989 SLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGA 1048
+LIFGTMFWD+GTK TKQQDL N MG MY AV FLGV N SSVQPVV +ER+VFYRE+ A
Sbjct: 1209 ALIFGTMFWDLGTKRTKQQDLSNAMGSMYAAVLFLGVQNSSSVQPVVAVERTVFYRERAA 1268
Query: 1049 GMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTF 1108
G+YS M YAFA L+EIPY+F QA Y +IVYAMIGFEWTAAKFFW+LFFMFF+LLYFTF
Sbjct: 1269 GIYSAMPYAFAHALVEIPYVFAQAVVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLLYFTF 1328
Query: 1109 FGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFF 1168
+GMM VA TPN HIA+IV+ FYGLWN+ SGFI+PRTRIPVWWRW YWA P+AWTLYG
Sbjct: 1329 YGMMAVAATPNQHIAAIVAAAFYGLWNLFSGFIVPRTRIPVWWRWYYWACPVAWTLYGLV 1388
Query: 1169 ASQFGDVQDRLE-SGETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNF 1227
SQFGD+QDR E +G+TV+Q+L Y+GF+HDFLG VAAV+ LF F+FA I+ NF
Sbjct: 1389 TSQFGDIQDRFEDTGDTVEQYLNDYFGFEHDFLGVVAAVIVGFTVLFLFIFAFAIKAFNF 1448
Query: 1228 QKR 1230
Q+R
Sbjct: 1449 QRR 1451
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147816688|emb|CAN77690.1| hypothetical protein VITISV_022715 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1841 bits (4768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 917/1281 (71%), Positives = 1041/1281 (81%), Gaps = 55/1281 (4%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQ 60
+LAL+GKLDSSLK +GKVTYNGH M+EFVPQRTA YISQHD HIGEMTVRETLAFSARCQ
Sbjct: 195 LLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIGEMTVRETLAFSARCQ 254
Query: 61 GVGSRYDMLVELSRREKAAKIIPDADIDVFMK-----------------AVVREGQEANV 103
GVG RYDML ELSRREKAA I PD DIDVFMK AV EGQ+ NV
Sbjct: 255 GVGDRYDMLAELSRREKAANIKPDPDIDVFMKEQNLLSLEFLKVLIGLMAVATEGQKENV 314
Query: 104 ITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSS 163
ITDY LK+L L+VCADT+VGD+M+RGISGGQRKRVTTGEMLVGP+ ALFMDEISTGLDSS
Sbjct: 315 ITDYTLKILGLEVCADTLVGDQMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSS 374
Query: 164 TTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFI 223
TT+ IVNSL Q HILNGTALISLLQPAPE Y+LFDDIIL+SD QIVYQGP E V FF
Sbjct: 375 TTYQIVNSLRQTIHILNGTALISLLQPAPETYDLFDDIILLSDSQIVYQGPREDVLDFFE 434
Query: 224 SMGFKCPKRKGIADFLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDE 283
SMGF+CP+RKG+ADFLQEVTSRKDQ+QYW R DEPY FVTVKEF AFQSFH+GRKLG E
Sbjct: 435 SMGFRCPERKGVADFLQEVTSRKDQQQYWARKDEPYSFVTVKEFAEAFQSFHIGRKLGHE 494
Query: 284 LGIPFDKKNSHPAALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIG 343
L PFDK SHPAAL T KYGV KKELL AC SRE+LLMKRNSFVYIF+LTQ++ +A I
Sbjct: 495 LATPFDKTKSHPAALKTEKYGVRKKELLDACISREYLLMKRNSFVYIFKLTQLIIMAAIS 554
Query: 344 MTIFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPS 403
MTIFLRT+MH++S DG IYTGALFF + I FNGM+E++MTIAKLPVFYKQR L FYP+
Sbjct: 555 MTIFLRTEMHKNSTDDGSIYTGALFFTVVMIMFNGMSELAMTIAKLPVFYKQRGLLFYPA 614
Query: 404 WAYALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLI 463
WAYALP+WILKIPI+ VEV+VWVFM+YYVIGFD N GR FKQYLLL++VNQM+SA+FR I
Sbjct: 615 WAYALPSWILKIPITFVEVAVWVFMSYYVIGFDPNVGRLFKQYLLLVLVNQMASALFRFI 674
Query: 464 AAVGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFL 523
AA GR+M+VANTFGS LLLLF LGGFVLSR+++KKWW WGYW SPLMYAQNAIVVNEFL
Sbjct: 675 AAAGRNMIVANTFGSFSLLLLFALGGFVLSRENVKKWWIWGYWSSPLMYAQNAIVVNEFL 734
Query: 524 GNSW-KKILPNKTKPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNP 582
G SW K + T+ LG+ VL SRGFFT+AYWYW+G GAL GFI++F F +T+AL++LN
Sbjct: 735 GKSWSKNSSTDSTESLGVAVLKSRGFFTEAYWYWIGAGALLGFILVFNFCYTVALTYLNA 794
Query: 583 FGTSKAFISEESQSTEHDSRTGGTVQLSTCANSSSHITRS-ESRDYVRRRNSSSQSR--- 638
F +A I+EES+ +S+TGG ++LS+ S T S E R+ + R SS+ S
Sbjct: 795 FEKPQAVITEESE----NSKTGGKIELSSHRRGSIDQTASTERREEIGRSISSTSSSVRA 850
Query: 639 ETTIETDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRP 698
E E + +GMVLPF+P S+TF++I YSVDMP+EMK +GV +D+L LL GVSGAFRP
Sbjct: 851 EAIAEARRNNKKGMVLPFQPLSITFEDIRYSVDMPEEMKSQGVLEDRLELLKGVSGAFRP 910
Query: 699 GVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHS 758
GVLTALMGV+G+GKTTLMDVLAGRKT GYI GNI ISGYPK QETF RI GYCEQNDIHS
Sbjct: 911 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNINISGYPKKQETFARIXGYCEQNDIHS 970
Query: 759 PYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818
P+VT++ESLLYSAWLRL ++V+SKTR+MF+EEVMELVEL PL+ +LVGLPGVNGLSTEQR
Sbjct: 971 PHVTIHESLLYSAWLRLPADVDSKTRKMFIEEVMELVELTPLKDSLVGLPGVNGLSTEQR 1030
Query: 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFE 878
KRLTIAVELVANPSIIFMDEPTSGLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIFE
Sbjct: 1031 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1090
Query: 879 AFD----------------------------AGIPGVSKIRDGYNPATWMLEVTAPSQEI 910
AFD GI GVSKI+ GYNPATWMLEVT +QE
Sbjct: 1091 AFDELLLLKRGGQEIYVGPLGRHSSHLIKYFEGIEGVSKIKGGYNPATWMLEVTTSAQEF 1150
Query: 911 ALGVDFAAIYKSSELYRINKALIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWS 970
LGVDF IYK+S+LYR NK LI+ELS+PAPGSK+LYF QY SFFTQCMACLWKQ S
Sbjct: 1151 LLGVDFTEIYKNSDLYRRNKDLIKELSQPAPGSKDLYFPTQYSQSFFTQCMACLWKQRRS 1210
Query: 971 YSRNPHYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSS 1030
Y RNP YTAVRF FT FI+LIFGTMFWD+GTK KQQDL N MG MY AV FLGV N SS
Sbjct: 1211 YWRNPPYTAVRFFFTTFIALIFGTMFWDLGTKRKKQQDLSNAMGSMYAAVLFLGVQNSSS 1270
Query: 1031 VQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAA 1090
VQPVV +ER+VFYRE+ AGMYS M YAFAQ L+EIPY+F QA Y +IVYAMIGFEWTAA
Sbjct: 1271 VQPVVAVERTVFYRERAAGMYSAMPYAFAQALVEIPYVFAQAVVYGVIVYAMIGFEWTAA 1330
Query: 1091 KFFWFLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVW 1150
KFFW+LFFMFF+LLYFTF+GMM VA TPN HIA+IV+ FYGLWN+ SGFI+PRTRIPVW
Sbjct: 1331 KFFWYLFFMFFTLLYFTFYGMMAVAATPNQHIAAIVAAAFYGLWNLFSGFIVPRTRIPVW 1390
Query: 1151 WRWSYWANPIAWTLYGFFASQFGDVQDRLE-SGETVKQFLRSYYGFKHDFLGAVAAVVFV 1209
WRW YWA P+AWTLYG SQFGD+QDR E +G+TV+Q+L Y+GF+HDFLG VAAV+
Sbjct: 1391 WRWYYWACPVAWTLYGLVTSQFGDIQDRFEDTGDTVEQYLNDYFGFEHDFLGVVAAVIVG 1450
Query: 1210 LPSLFAFVFALGIRVLNFQKR 1230
LF F+FA I+ NFQ+R
Sbjct: 1451 FTILFLFIFAFAIKAFNFQRR 1471
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482652|ref|XP_003632801.1| PREDICTED: pleiotropic drug resistance protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1837 bits (4759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 910/1260 (72%), Positives = 1031/1260 (81%), Gaps = 58/1260 (4%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQ 60
+LAL+GKLDSSLK +GKVTYNGH M+EFVPQRTA YISQHD HIGEMTVRETLAFSARCQ
Sbjct: 195 LLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIGEMTVRETLAFSARCQ 254
Query: 61 GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADT 120
GVG RYDML ELSRREKAA I PD DIDVFMKA EGQ+ NVITDY LK+L L+VCADT
Sbjct: 255 GVGDRYDMLAELSRREKAANIKPDPDIDVFMKAAATEGQKENVITDYTLKILGLEVCADT 314
Query: 121 VVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILN 180
+VGD+M+RGISGGQRKRVTTGEMLVGP+ ALFMDEISTGLDSSTT+ IVNSL Q HILN
Sbjct: 315 LVGDQMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTYQIVNSLRQTIHILN 374
Query: 181 GTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQ 240
GTALISLLQPAPE Y+LFDDIIL+SD QIVYQGP E V FF SMGF+CP+RKG+ADFLQ
Sbjct: 375 GTALISLLQPAPETYDLFDDIILLSDSQIVYQGPREDVLDFFESMGFRCPERKGVADFLQ 434
Query: 241 EVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTT 300
EVTSRKDQ+QYW R DEPY FVTVK+F AFQSFH GRK+GDEL PFDK SHPAAL T
Sbjct: 435 EVTSRKDQQQYWARKDEPYSFVTVKQFAEAFQSFHSGRKVGDELATPFDKTKSHPAALKT 494
Query: 301 RKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDG 360
KYGV KKELL AC SRE+ LMKRNSFVYI +LTQ++ +A I MTIFLRT+MH++S DG
Sbjct: 495 EKYGVRKKELLDACISREYWLMKRNSFVYILQLTQLIIMAAISMTIFLRTEMHKNSTDDG 554
Query: 361 VIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIV 420
IY GALFF + I FNGM+E++MTIAKLPVFYKQR L FYP+WAYAL +WILKIPI+ V
Sbjct: 555 SIYMGALFFTVVMIMFNGMSELAMTIAKLPVFYKQRGLLFYPAWAYALSSWILKIPITFV 614
Query: 421 EVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTFGSLV 480
EV+VWVFM+YYVIGFD N GR FKQYLLL++VNQM+SA+FR IAA GR+M+VANTFGS
Sbjct: 615 EVAVWVFMSYYVIGFDPNVGRLFKQYLLLVLVNQMASALFRFIAAAGRNMIVANTFGSFS 674
Query: 481 LLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSW-KKILPNKTKPLG 539
LLLLF LGGFVLSR+++KKWW WGYW SPLMYAQNAIVVNEFLG SW K N T+ LG
Sbjct: 675 LLLLFALGGFVLSRENVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSKNSSTNSTESLG 734
Query: 540 IEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTEH 599
+ VL SRGFFT+AYWYW+G GAL GFI++F F +T+AL++LN F +A I+EES+
Sbjct: 735 VAVLKSRGFFTEAYWYWIGAGALLGFILVFNFCYTVALTYLNAFEKPQAVITEESE---- 790
Query: 600 DSRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIETDQPKNRGMVLPFEPF 659
+S+TGG ++L SSH RR + +++R T RGMVLPF+P
Sbjct: 791 NSKTGGKIEL------SSH-----------RREAIAEARRNT-------KRGMVLPFQPL 826
Query: 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVL 719
S+TFD+I YSVDMP+EMK +GV +D+L LL GVSGAFRPGVLTALMGV+G+GKTTLMDVL
Sbjct: 827 SITFDDIRYSVDMPEEMKSQGVLEDRLKLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVL 886
Query: 720 AGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEV 779
AGRKT GYI GNI ISGYPK QETFTRISGYCEQNDIHSP+VT++ESLLYSAWLRL ++V
Sbjct: 887 AGRKTGGYIEGNINISGYPKKQETFTRISGYCEQNDIHSPHVTIHESLLYSAWLRLPADV 946
Query: 780 NSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 839
+SKTR+MF+E+VMELVEL PL+ +LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP
Sbjct: 947 DSKTRKMFIEKVMELVELTPLKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1006
Query: 840 TSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD------------------ 881
TSGLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD
Sbjct: 1007 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQEIYVGLLG 1066
Query: 882 ----------AGIPGVSKIRDGYNPATWMLEVTAPSQEIALGVDFAAIYKSSELYRINKA 931
GI GVSKI+ GYNPATWMLEVT +QE LGVDF IYK+S LYR NK
Sbjct: 1067 RHSSCLIKYFEGIEGVSKIKGGYNPATWMLEVTTSAQEFLLGVDFTEIYKNSNLYRRNKD 1126
Query: 932 LIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHYTAVRFLFTIFISLI 991
LI+ELS+PAPGSK+LYF QY SFFTQCMACLWKQ SY RNP YTAVRF FT FI+LI
Sbjct: 1127 LIKELSQPAPGSKDLYFPTQYSQSFFTQCMACLWKQRRSYWRNPPYTAVRFFFTTFIALI 1186
Query: 992 FGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMY 1051
FGTMFWD+GTK TKQQDL N MG MY AV FLGV N SSVQPVV +ER+VFYRE+ AG+Y
Sbjct: 1187 FGTMFWDLGTKRTKQQDLSNAMGSMYAAVLFLGVQNSSSVQPVVAVERTVFYRERAAGIY 1246
Query: 1052 SPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGM 1111
S M YAFA V IEIPY+F QA Y +IVYAMIGFEWTAAKFFW+LFFMFF+LLYFTF+GM
Sbjct: 1247 SAMPYAFAHVTIEIPYVFAQAVVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGM 1306
Query: 1112 MLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQ 1171
M VA TPN HIA+IV+ FYGLWN+ SGFI+PRTRIPVWWRW YWA P+AWTLYG SQ
Sbjct: 1307 MAVAATPNQHIAAIVAAAFYGLWNLFSGFIVPRTRIPVWWRWYYWACPVAWTLYGLVTSQ 1366
Query: 1172 FGDVQDRLE-SGETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNFQKR 1230
FGD+QDR E +G+TV+Q+L Y+GF+HDFLG VAAV+ LF F+FA I+ NFQ+R
Sbjct: 1367 FGDIQDRFEDTGDTVEQYLNDYFGFEHDFLGVVAAVIVGFTVLFLFIFAFAIKAFNFQRR 1426
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555825|ref|XP_003546230.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1837 bits (4757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 868/1260 (68%), Positives = 1021/1260 (81%), Gaps = 57/1260 (4%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQ 60
+LAL+GKLD +LK SG+VTYNGH+++EFVPQRTAAYISQHD+HIGEMTVRETLAFSARCQ
Sbjct: 195 LLALSGKLDKTLKVSGRVTYNGHELNEFVPQRTAAYISQHDLHIGEMTVRETLAFSARCQ 254
Query: 61 GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADT 120
GVGSRYDML ELSRREKAA I PD D+DV+MKA EGQE+N++TDY LK+L LD+CADT
Sbjct: 255 GVGSRYDMLSELSRREKAANIKPDPDLDVYMKATATEGQESNIVTDYTLKILGLDICADT 314
Query: 121 VVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILN 180
+VGDEMLRGISGGQRKRVTTGEMLVGPA+ALFMDEISTGLDSSTTF IV+SL + HILN
Sbjct: 315 MVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIVSSLRHYVHILN 374
Query: 181 GTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQ 240
GTA+ISLLQPAPE Y+LFDDIIL+SDGQ+VY GP E+V FF SMGF+CP+RKG+ADFLQ
Sbjct: 375 GTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESMGFRCPERKGVADFLQ 434
Query: 241 EVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTT 300
EVTS+KDQ QYWVR D+PYRFVTV +F AFQSFH+G KLG+EL +PFD+ SHPAALTT
Sbjct: 435 EVTSKKDQAQYWVRRDQPYRFVTVTQFAEAFQSFHIGGKLGEELTVPFDRTKSHPAALTT 494
Query: 301 RKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDG 360
+KYG+ KKELLKA FSRE+LLMKRNSFVY+F+L+Q+ +A++ MT+FLRT+MH +++ D
Sbjct: 495 KKYGINKKELLKANFSREYLLMKRNSFVYLFKLSQLFIMALVAMTLFLRTEMHHENMDDA 554
Query: 361 VIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIV 420
+Y GA+FF+L T+ FNG+AEISMTIAKLPVFYKQR+L FYPSWAYA+P+WILKIP++IV
Sbjct: 555 GVYAGAVFFMLITVMFNGLAEISMTIAKLPVFYKQRNLLFYPSWAYAIPSWILKIPVTIV 614
Query: 421 EVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTFGSLV 480
EV+VWVF+TYYVIGFD N GRFFKQYL+LLIV+QM+S +FR IAA+GR+M+VANTFG+
Sbjct: 615 EVAVWVFLTYYVIGFDPNVGRFFKQYLVLLIVSQMASGLFRTIAALGRNMIVANTFGAFA 674
Query: 481 LLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKILPNKTKPLGI 540
++ + LGGF+LS+ DIK WW WGYW SPLMY QNA++VNEFL NSW N T LG+
Sbjct: 675 IITVVALGGFILSKRDIKSWWIWGYWISPLMYGQNALMVNEFLSNSWH----NATHNLGV 730
Query: 541 EVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTEHD 600
E L+SR FFTD+YWYWLG+GAL GF+ LF F LAL FL PF +A I+E+ S E
Sbjct: 731 EYLESRAFFTDSYWYWLGLGALVGFVFLFNVMFGLALEFLGPFDKPQATITEDESSNEG- 789
Query: 601 SRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIETDQPKNRGMVLPFEPFS 660
T ++L SS ++ +E+ K +GMVLPFEP S
Sbjct: 790 --TLADIELPGI--------------------ESSGRGDSLVESSHGKKKGMVLPFEPHS 827
Query: 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLA 720
+TFDE+ YSVDMPQEMK +GV +D+LVLL GVSGAFRPGVLTALMGV+G+GKTTLMDVLA
Sbjct: 828 ITFDEVVYSVDMPQEMKEQGVQEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 887
Query: 721 GRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVN 780
GRKT GYI G+I ISGYPK QETF RISGYCEQNDIHSP+VTVYESLLYSAWLRL S V+
Sbjct: 888 GRKTGGYIDGSIKISGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPSSVD 947
Query: 781 SKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 840
SKTR+MF+EEVMELVELNP+R +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPT
Sbjct: 948 SKTRKMFIEEVMELVELNPVRNSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1007
Query: 841 SGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA------------------ 882
SGLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD
Sbjct: 1008 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 1067
Query: 883 ----------GIPGVSKIRDGYNPATWMLEVTAPSQEIALGVDFAAIYKSSELYRINKAL 932
I GVSKI+DGYNPATWMLEVTA +QE++LGVDF +YK+S+LYR NK L
Sbjct: 1068 HSSHLIKYFESIEGVSKIKDGYNPATWMLEVTATAQELSLGVDFTDLYKNSDLYRRNKQL 1127
Query: 933 IQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHYTAVRFLFTIFISLIF 992
IQEL +PAPGSK+L+F QY SF QC ACLWKQ WSY RNP YTAVRF FT FI+L+F
Sbjct: 1128 IQELGQPAPGSKDLHFPTQYSQSFLVQCQACLWKQRWSYWRNPPYTAVRFFFTTFIALMF 1187
Query: 993 GTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYS 1052
GT+FWD+G K + + DL N +G MY AV FLGV N SSVQPVV +ER+VFYREK AGMYS
Sbjct: 1188 GTIFWDLGGKHSTRGDLLNAIGSMYTAVLFLGVQNASSVQPVVAIERTVFYREKAAGMYS 1247
Query: 1053 PMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMM 1112
+ YAFAQ+L+E+PY+FVQA Y +IVYAMIGFEWTA KFFW+LFFM+F+LLY+TF+GMM
Sbjct: 1248 ALPYAFAQILVELPYVFVQAVTYGVIVYAMIGFEWTAEKFFWYLFFMYFTLLYYTFYGMM 1307
Query: 1113 LVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQF 1172
V TPNHHIASIV+ FY +WN+ SGF++ R IPVWWRW YWA P+AWT+YG ASQF
Sbjct: 1308 TVGLTPNHHIASIVAAAFYAVWNLFSGFVVTRPSIPVWWRWYYWACPVAWTIYGLVASQF 1367
Query: 1173 GDVQDRL--ESGETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNFQKR 1230
GD+ + + E + VK FL YYG KHDF+G A VV + LFA +FA+ I+ NFQKR
Sbjct: 1368 GDLTEPMTSEGQKIVKDFLEDYYGIKHDFIGVSAVVVAGIAVLFALIFAVSIKTFNFQKR 1427
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546579|ref|XP_002514349.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223546805|gb|EEF48303.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1826 bits (4729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 860/1250 (68%), Positives = 1016/1250 (81%), Gaps = 38/1250 (3%)
Query: 13 KASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVEL 72
K+SG+VTYNGH+M EFVPQRT+AYISQ+D+HIGEMTVRETLAFSARCQGVG+RY++L EL
Sbjct: 66 KSSGRVTYNGHEMKEFVPQRTSAYISQYDLHIGEMTVRETLAFSARCQGVGARYEILAEL 125
Query: 73 SRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISG 132
SRREK A I PD DID+FMKA EGQEAN++TDYILK+L L+VCADT+VGDEM+RGISG
Sbjct: 126 SRREKVANIKPDPDIDIFMKAAALEGQEANLMTDYILKILGLEVCADTMVGDEMIRGISG 185
Query: 133 GQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAP 192
GQ+KRVTTGEMLVGPA ALFMDEISTGLDSSTT IVNSL Q HILNGTA+ISLLQPAP
Sbjct: 186 GQKKRVTTGEMLVGPARALFMDEISTGLDSSTTSQIVNSLKQSIHILNGTAIISLLQPAP 245
Query: 193 EVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQEVTSRKDQEQYW 252
E Y+LFDDIIL+SDGQIVYQGP E+V +FF MGF+CP+RKG+ADFLQEVTSRKDQEQYW
Sbjct: 246 ETYDLFDDIILLSDGQIVYQGPRENVLEFFEHMGFRCPERKGVADFLQEVTSRKDQEQYW 305
Query: 253 VRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTTRKYGVGKKELLK 312
R +EPY F++VKEF AFQSFH+GRKLGDEL PFDK +HPAALTT++YGV KKELLK
Sbjct: 306 TRKEEPYSFISVKEFAEAFQSFHIGRKLGDELAAPFDKSKAHPAALTTKRYGVSKKELLK 365
Query: 313 ACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVIYTGALFFILT 372
AC SRE LLMKRNSF YIF++ Q++ +A I MTIFLRT+MHR+++ D +Y GALFF +
Sbjct: 366 ACVSREFLLMKRNSFAYIFKMIQLIIMAFITMTIFLRTEMHRNTVEDAGVYFGALFFAVM 425
Query: 373 TITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIVEVSVWVFMTYYV 432
TI FNG++E++MT+ KLPVFYKQRDL FYPSW YALP WILKIPI+ VEV++WV +TYYV
Sbjct: 426 TIMFNGLSELAMTVIKLPVFYKQRDLLFYPSWVYALPTWILKIPITFVEVAIWVILTYYV 485
Query: 433 IGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTFGSLVLLLLFVLGGFVL 492
+GFD N RFFKQYL+LL+ NQM+S++FRLIAA+GR+++VANT LL VL GFVL
Sbjct: 486 MGFDPNIERFFKQYLILLMTNQMASSLFRLIAALGRNLIVANTIAIFSLLTTLVLSGFVL 545
Query: 493 SRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKILPNKTKPLGIEVLDSRGFFTDA 552
SRDD+KKWW WGYW SP+MY QN I VNEFLGNSW + PN T+ LG+ L R F DA
Sbjct: 546 SRDDVKKWWIWGYWLSPMMYVQNGICVNEFLGNSWNHLPPNSTEALGVNFLKYRRIFPDA 605
Query: 553 YWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTEHDSRTGGTVQLSTC 612
YWYW+ VGALTG+IILF FTLAL +LNPF +A +SEE+ + ++ + TG + LS
Sbjct: 606 YWYWIAVGALTGYIILFNLLFTLALKYLNPFEKPQAILSEEAFADKNVNGTGEFIGLSRS 665
Query: 613 ANSSSHITRSESRDYVRRRNSSSQSRETTI----ETDQPKNRGMVLPFEPFSLTFDEITY 668
SS R V +RN SS++ + +Q + RGMVLPF+P S+TFDEI Y
Sbjct: 666 RKSSLE------RGNVSQRNVSSRTPTARVSNFSNANQERKRGMVLPFQPLSITFDEIKY 719
Query: 669 SVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI 728
+VDMPQEMK +G+ +D+L LL GVSGAFRPGVLTALMG +G+GKTTLMDVLAGRKT GYI
Sbjct: 720 AVDMPQEMKSQGITEDRLQLLKGVSGAFRPGVLTALMGASGAGKTTLMDVLAGRKTGGYI 779
Query: 729 TGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFV 788
GNITISGYPK QETF RISGYCEQ DIHSP+VT+YESLLYSAWLRL +EVNS TR+MF+
Sbjct: 780 EGNITISGYPKKQETFARISGYCEQTDIHSPHVTIYESLLYSAWLRLPTEVNSDTRKMFI 839
Query: 789 EEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 848
EEVMELVELN LR+ALVGLPGVNGLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAA
Sbjct: 840 EEVMELVELNSLREALVGLPGVNGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 899
Query: 849 AVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD--------------------------- 881
A+VMRTVRNTVDTGRTVVCTIHQPSIDIF+AFD
Sbjct: 900 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELFLLKRGGQEIYVGPVGRHAYHLIRY 959
Query: 882 -AGIPGVSKIRDGYNPATWMLEVTAPSQEIALGVDFAAIYKSSELYRINKALIQELSKPA 940
I GV KI+DGYNPATWMLEVT +QE ALG+DF IYK+SEL+R NKALI+ELS+P
Sbjct: 960 FEEIEGVPKIKDGYNPATWMLEVTTAAQEAALGIDFNDIYKNSELHRRNKALIKELSRPP 1019
Query: 941 PGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHYTAVRFLFTIFISLIFGTMFWDMG 1000
PGSK+LYF QY F TQCM CLWKQH SY RNP Y+AVR LFT FI+L+ GT+FW++G
Sbjct: 1020 PGSKDLYFPTQYSQPFLTQCMTCLWKQHLSYWRNPTYSAVRLLFTTFIALMMGTIFWNLG 1079
Query: 1001 TKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQ 1060
K ++QQD++N MG MY AV FLG LN SSVQPVV +ER+VFYRE+ AGMYS + YAF Q
Sbjct: 1080 PKRSRQQDIYNAMGSMYAAVLFLGFLNASSVQPVVAIERTVFYRERAAGMYSALPYAFGQ 1139
Query: 1061 VLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMMLVAWTPNH 1120
V+IE+PYI VQ Y +IVYAMIGFEWT++KFFW+LFFM+F+ LYFTF+GMM VA TPNH
Sbjct: 1140 VVIELPYILVQTIIYGVIVYAMIGFEWTSSKFFWYLFFMYFTFLYFTFYGMMTVAVTPNH 1199
Query: 1121 HIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQDRLE 1180
+IA+IV+T FY +WN+ SGF++PRTRIPVWWRW+YWA P+AWTLYG ASQ+GDV ++L+
Sbjct: 1200 NIAAIVATAFYAIWNLFSGFVVPRTRIPVWWRWNYWACPVAWTLYGLVASQYGDVNEQLD 1259
Query: 1181 SGETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNFQKR 1230
SGETV+ F+R+Y+GF+H ++G VA V+ + LF F+FA I+ NFQKR
Sbjct: 1260 SGETVENFVRNYFGFQHAYVGIVAVVLVGICVLFGFIFAFSIKAFNFQKR 1309
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1230 | ||||||
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.707 | 0.592 | 0.554 | 0.0 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.494 | 0.427 | 0.662 | 0.0 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.497 | 0.421 | 0.559 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.495 | 0.419 | 0.548 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.490 | 0.418 | 0.558 | 0.0 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.491 | 0.425 | 0.537 | 0.0 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.491 | 0.426 | 0.537 | 0.0 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.564 | 0.491 | 0.456 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.482 | 0.415 | 0.491 | 0.0 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.565 | 0.479 | 0.465 | 2.2e-244 |
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2521 (892.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 491/885 (55%), Positives = 621/885 (70%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQ 60
+LALAGKLD SL+ SG +TYNG+ + EFVP++T+AYISQ+D+H+G MTV+ETL FSARCQ
Sbjct: 214 LLALAGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVGIMTVKETLDFSARCQ 273
Query: 61 GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADT 120
GVG+RYD+L EL+RREK A I P+AD+D+FMKA +G + +++TDY LK+L LD+C DT
Sbjct: 274 GVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKNSLVTDYTLKILGLDICKDT 333
Query: 121 VVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILN 180
+VGD+M+RGISGGQ+KRVTTGEM+VGP LFMDEISTGLDSSTTF IV L Q H+
Sbjct: 334 IVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLNE 393
Query: 181 GTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQ 240
T L+SLLQPAPE ++LFDDIILVS+GQIVYQGP +++ +FF S GFKCP+RKG ADFLQ
Sbjct: 394 ATVLMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESFGFKCPERKGTADFLQ 453
Query: 241 EVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTT 300
EVTS+KDQEQYWV + PY ++ V EF ++SFHVG K+ +EL +PFDK H AAL
Sbjct: 454 EVTSKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELAVPFDKSRGHKAALVF 513
Query: 301 RKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDG 360
KY V K+ELLK+C+ +E LLM+RN+F Y+F+ Q++ +A I T+FLRT+M+ + D
Sbjct: 514 DKYSVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITSTLFLRTEMNTRNEGDA 573
Query: 361 VIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIV 420
+Y GAL F + FNG AE++M +++LPVFYKQRDL FYPSW ++LP ++L IP SI+
Sbjct: 574 NLYIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWTFSLPTFLLGIPSSIL 633
Query: 421 EVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTXXXXX 480
E + W+ +TYY IGF +A RFFKQ+LL+ ++ QM++++FRLIA+V R+M++ANT
Sbjct: 634 ESTAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIASVCRTMMIANTGGALT 693
Query: 481 XXXXXXXXXXXXXRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSW--KKILPNKTKPL 538
+ I WW W YW SPL YA N +VVNE W K N T L
Sbjct: 694 LLLVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAPRWMNKMASSNSTIKL 753
Query: 539 GIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTE 598
G VL++ + WYW+ VGAL F LF FTLAL++LNP G + EE
Sbjct: 754 GTMVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPLGKKAGLLPEEENEDA 813
Query: 599 HDSRTGGTVQLSTC-ANSSSHITRSE-SRDYVRRRNSSSQSRETTIETDQPKNRGMVLPF 656
+ LST N + SRD + + ++ +GMVLPF
Sbjct: 814 DQGKDPMRRSLSTADGNRRGEVAMGRMSRDSAAEASGGAGNK-----------KGMVLPF 862
Query: 657 EPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLM 716
P +++FD++ Y VDMP EM+ +GV + +L LL GV+GAFRPGVLTALMGV+G+GKTTLM
Sbjct: 863 TPLAMSFDDVKYFVDMPGEMRDQGVTETRLQLLKGVTGAFRPGVLTALMGVSGAGKTTLM 922
Query: 717 DVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS 776
DVLAGRKT GYI G++ ISG+PK QETF RISGYCEQ DIHSP VTV ESL++SA+LRL
Sbjct: 923 DVLAGRKTGGYIEGDVRISGFPKVQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLP 982
Query: 777 SEVNSKTRXXXXXXXXXXXXXNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 836
EV + + LR ++VGLPGV GLSTEQRKRLTIAVELVANPSIIFM
Sbjct: 983 KEVGKDEKMMFVDQVMELVELDSLRDSIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFM 1042
Query: 837 DEPTSGLDXXXXXXXXXXXXXXXDTGRTVVCTIHQPSIDIFEAFD 881
DEPTSGLD DTGRTVVCTIHQPSIDIFEAFD
Sbjct: 1043 DEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFD 1087
|
|
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2207 (782.0 bits), Expect = 0., Sum P(3) = 0.
Identities = 405/611 (66%), Positives = 495/611 (81%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQ 60
+LALAGKLD LK +G+VTYNGH M+EFVPQRTAAYI Q+D+HIGEMTVRET A++AR Q
Sbjct: 197 LLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHIGEMTVRETFAYAARFQ 256
Query: 61 GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADT 120
GVGSRYDML EL+RREK A I PD DID+FMKA+ G++ NV+TDYILK+L L+VCADT
Sbjct: 257 GVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVMTDYILKILGLEVCADT 316
Query: 121 VVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILN 180
+VGD+MLRGISGGQ+KRVTTGEMLVGP+ ALFMDEISTGLDSSTT+ IVNSL + HI N
Sbjct: 317 MVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSLRNYVHIFN 376
Query: 181 GTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQ 240
GTALISLLQPAPE +NLFDDIIL+++G+I+Y+GP +HV +FF +MGFKCP RKG+ADFLQ
Sbjct: 377 GTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFETMGFKCPPRKGVADFLQ 436
Query: 241 EVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTT 300
EVTS+KDQ QYW R DEPYRF+ V+EF AFQSFHVGR++GDEL +PFDK SHPAALTT
Sbjct: 437 EVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDELALPFDKTKSHPAALTT 496
Query: 301 RKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDG 360
+KYGVG KEL+K FSRE+LLMKRNSFVY F+ Q++ +A + MT+F RT+M + + DG
Sbjct: 497 KKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTMTLFFRTEMQKKTEVDG 556
Query: 361 VIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIV 420
+YTGALFFIL + FNGM+E+SMTIAKLPVFYKQRDL FYP+W Y+LP W+LKIPIS +
Sbjct: 557 SLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAWVYSLPPWLLKIPISFM 616
Query: 421 EVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTXXXXX 480
E ++ F+TYYVIGFD N GR FKQY+LL+++NQM+SA+F+++AA+GR+M+VANT
Sbjct: 617 EAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVAALGRNMIVANTFGAFA 676
Query: 481 XXXXXXXXXXXXXRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKILPNKTKPLGI 540
RDDIKKWW WGYW SP+MY QNAI+ NEF G+SW + + N ++ LG+
Sbjct: 677 MLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGHSWSRAVENSSETLGV 736
Query: 541 EVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEE--SQSTE 598
L SRGF AYWYW+G GAL GF++LF FGFTLAL+FLN G +A I+EE S TE
Sbjct: 737 TFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLGKPQAVIAEEPASDETE 796
Query: 599 HDS-RTGGTVQ 608
S R+ G V+
Sbjct: 797 LQSARSEGVVE 807
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1851 (656.6 bits), Expect = 0., Sum P(3) = 0.
Identities = 349/624 (55%), Positives = 450/624 (72%)
Query: 3 ALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGV 62
ALAGKLD +L+ SG++TY GH+ EFVPQ+T AYISQHD+H GEMTVRE+L FS RC GV
Sbjct: 218 ALAGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVRESLDFSGRCLGV 277
Query: 63 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVV 122
G+RY +L ELSRRE+ A I PD +ID FMK++ GQE +++TDY+LK+L LD+CADT+V
Sbjct: 278 GTRYQLLTELSRREREAGIKPDPEIDAFMKSIAISGQETSLVTDYVLKLLGLDICADTLV 337
Query: 123 GDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGT 182
GD M RGISGGQRKR+TTGEMLVGPA ALFMDEISTGLDSSTTF I + Q HI + T
Sbjct: 338 GDVMRRGISGGQRKRLTTGEMLVGPATALFMDEISTGLDSSTTFQICKFMRQLVHIADVT 397
Query: 183 ALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQEV 242
+ISLLQPAPE + LFDDIIL+S+GQIVYQG ++V +FF MGFKCP+RKGIADFLQEV
Sbjct: 398 MVISLLQPAPETFELFDDIILLSEGQIVYQGSRDNVLEFFEYMGFKCPERKGIADFLQEV 457
Query: 243 TSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTTRK 302
TS+KDQEQYW R + PY +V+V +F F SFH G++L E +P+DK +HPAAL T+K
Sbjct: 458 TSKKDQEQYWNRREHPYSYVSVHDFSSGFNSFHAGQQLASEFRVPYDKAKTHPAALVTQK 517
Query: 303 YGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVI 362
YG+ K+L KACF RE LLMKRNSFVY+F+ Q+ +++I MT++ RT+MH ++ DG
Sbjct: 518 YGISNKDLFKACFDREWLLMKRNSFVYVFKTVQITIMSLIAMTVYFRTEMHVGTVQDGQK 577
Query: 363 YTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIVEV 422
+ GALFF L + FNGMAE++ T+ +LPVF+KQRD FYP WA+ALP ++LKIP+S++E
Sbjct: 578 FYGALFFSLINLMFNGMAELAFTVMRLPVFFKQRDFLFYPPWAFALPGFLLKIPLSLIES 637
Query: 423 SVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTXXXXXXX 482
+W+ +TYY IGF +A RFF+Q L VNQM+ ++FR + A+GR+ V+AN+
Sbjct: 638 VIWIALTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGALGRTEVIANSGGTLALL 697
Query: 483 XXXXXXXXXXXRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKILPNK-----TKP 537
+DDI W W Y+ SP+MY Q A+V+NEFL W PN K
Sbjct: 698 VVFVLGGFIISKDDIPSWLTWCYYTSPMMYGQTALVINEFLDERWGS--PNNDTRINAKT 755
Query: 538 LGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQST 597
+G +L SRGFFT+ YW+W+ +GAL GF +LF F + +AL +LNP G SKA E
Sbjct: 756 VGEVLLKSRGFFTEPYWFWICIGALLGFTVLFNFCYIIALMYLNPLGNSKATTVVEEGKD 815
Query: 598 EHD---SRTGGTVQLSTCANSSSH 618
+H S TGG+V T ++SSH
Sbjct: 816 KHKGSHSGTGGSVVELT--STSSH 837
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1835 (651.0 bits), Expect = 0., Sum P(3) = 0.
Identities = 340/620 (54%), Positives = 444/620 (71%)
Query: 3 ALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGV 62
ALAGKLD +L+ SG++TY GH+ EFVPQ+T AYISQHD+H GEMTVRE L FS RC GV
Sbjct: 220 ALAGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVREILDFSGRCLGV 279
Query: 63 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVV 122
GSRY ++ ELSRREK I PD ID FMK++ GQE +++TDY+LK+L LD+CAD +
Sbjct: 280 GSRYQLMSELSRREKEEGIKPDPKIDAFMKSIAISGQETSLVTDYVLKILGLDICADILA 339
Query: 123 GDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGT 182
GD M RGISGGQ+KR+TTGEMLVGPA ALFMDEISTGLDSSTTF I + Q HI + T
Sbjct: 340 GDVMRRGISGGQKKRLTTGEMLVGPARALFMDEISTGLDSSTTFQICKFMRQLVHISDVT 399
Query: 183 ALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQEV 242
+ISLLQPAPE + LFDDIIL+S+GQIVYQGP ++V +FF GF+CP+RKG+ADFLQEV
Sbjct: 400 MIISLLQPAPETFELFDDIILLSEGQIVYQGPRDNVLEFFEYFGFQCPERKGVADFLQEV 459
Query: 243 TSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTTRK 302
TS+KDQEQYW + ++PY +V+V +F F +FH G+KL E +P+DK +H AAL T+K
Sbjct: 460 TSKKDQEQYWNKREQPYNYVSVSDFSSGFSTFHTGQKLTSEFRVPYDKAKTHSAALVTQK 519
Query: 303 YGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVI 362
YG+ EL KACF RE LLMKRNSFVY+F+ Q+ +++I MT++LRT+MH ++ DG
Sbjct: 520 YGISNWELFKACFDREWLLMKRNSFVYVFKTVQITIMSLITMTVYLRTEMHVGTVRDGQK 579
Query: 363 YTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIVEV 422
+ GA+FF L + FNG+AE++ T+ +LPVFYKQRD FYP WA+ALPAW+LKIP+S++E
Sbjct: 580 FYGAMFFSLINVMFNGLAELAFTVMRLPVFYKQRDFLFYPPWAFALPAWLLKIPLSLIES 639
Query: 423 SVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTXXXXXXX 482
+W+ +TYY IGF +A RFF+Q L VNQM+ ++FR + A+GR+ V++N+
Sbjct: 640 GIWIGLTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGAIGRTEVISNSIGTFTLL 699
Query: 483 XXXXXXXXXXXRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKILPN-----KTKP 537
+DDI+ W W Y+ SP+MY Q AIV+NEFL W PN K
Sbjct: 700 IVFTLGGFIIAKDDIRPWMTWAYYMSPMMYGQTAIVMNEFLDERWSS--PNYDTRINAKT 757
Query: 538 LGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEES--- 594
+G +L SRGFFT+ YW+W+ + AL GF +LF + LAL +LNP G SKA + EE
Sbjct: 758 VGEVLLKSRGFFTEPYWFWICIVALLGFSLLFNLFYILALMYLNPLGNSKATVVEEGKDK 817
Query: 595 QSTEHDSRTGGTVQLSTCAN 614
Q E+ G V+L++ +N
Sbjct: 818 QKGENRGTEGSVVELNSSSN 837
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1816 (644.3 bits), Expect = 0., Sum P(3) = 0.
Identities = 338/605 (55%), Positives = 440/605 (72%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQ 60
+LALAGKLD SL SG+VTYNG+ ++EFVP +T+AYISQ+D+H+G MTV+ETL FSARCQ
Sbjct: 212 LLALAGKLDKSLDVSGEVTYNGYRLNEFVPIKTSAYISQNDLHVGIMTVKETLDFSARCQ 271
Query: 61 GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADT 120
GVG+RYD+L EL+RREK A I P+AD+D+FMKA +G ++++ITDY LK+L LD+C DT
Sbjct: 272 GVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKSSLITDYTLKILGLDICKDT 331
Query: 121 VVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILN 180
+VGD+M+RGISGGQ+KRVTTGEM+VGP LFMDEISTGLDSSTTF IV L Q H+
Sbjct: 332 IVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLTE 391
Query: 181 GTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQ 240
T LISLLQPAPE ++LFDDIIL+S+GQIVYQGP +H+ +FF S GFKCP+RKG ADFLQ
Sbjct: 392 ATVLISLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESFGFKCPERKGTADFLQ 451
Query: 241 EVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTT 300
EVTS+KDQEQYWV + PYR++ V EF +F+ FHVG KL +EL +P+DK SH AAL
Sbjct: 452 EVTSKKDQEQYWVDPNRPYRYIPVSEFASSFKKFHVGSKLSNELSVPYDKSKSHKAALMF 511
Query: 301 RKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDG 360
KY + K ELLK+C+ +E +LMKRNSF Y+F+ Q++ +A I T++LRT+MH + D
Sbjct: 512 DKYSIKKTELLKSCWDKEWMLMKRNSFFYVFKTVQIIIIAAITSTLYLRTEMHTRNEIDA 571
Query: 361 VIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIV 420
IY G+L F + FNG+AE++MTI +LPVFYKQRDL F+P W Y LP ++L IPISI
Sbjct: 572 NIYVGSLLFAMIVNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPWTYTLPTFLLGIPISIF 631
Query: 421 EVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTXXXXX 480
E + W+ +TYY IG+ +A RFFKQ+L++ ++ QM++ +FR IA+ R+M +ANT
Sbjct: 632 ESTAWMVVTYYSIGYAPDAERFFKQFLIIFLIQQMAAGIFRFIASTCRTMTIANTGGVLV 691
Query: 481 XXXXXXXXXXXXXRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSW-KKILPNKTKPLG 539
R +I WW+W YW SPL YA NAI VNE W K+ N T LG
Sbjct: 692 LLVVFLTGGFLLPRSEIPVWWRWAYWISPLSYAFNAITVNELFAPRWMNKMSGNSTTRLG 751
Query: 540 IEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTEH 599
VL+ F D WYW+GVG L GF ++F FTLAL++L+P G ++A + +E + E
Sbjct: 752 TSVLNIWDVFDDKNWYWIGVGGLLGFTVIFNGFFTLALTYLDPLGKAQAILPKE-EDEEA 810
Query: 600 DSRTG 604
+ G
Sbjct: 811 KGKAG 815
|
|
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1794 (636.6 bits), Expect = 0., Sum P(3) = 0.
Identities = 325/605 (53%), Positives = 433/605 (71%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQ 60
+LALAG+L ++L+ SGK+TYNG+D+ E + RT+AY+SQ D H+ EMTVR+TL F+ RCQ
Sbjct: 178 LLALAGRLGTNLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRCQ 237
Query: 61 GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADT 120
GVG +YDML+EL+RREK A I+PD D+D+FMK++ G E +++ +Y++K+L LD CADT
Sbjct: 238 GVGFKYDMLLELARREKLAGIVPDEDLDIFMKSLALGGMETSLVVEYVMKILGLDTCADT 297
Query: 121 VVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILN 180
+VGDEM++GISGGQ+KR+TTGE+LVGPA LFMDEIS GLDSSTT I+ + H L
Sbjct: 298 LVGDEMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHALE 357
Query: 181 GTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQ 240
GT +ISLLQP+PE Y LFDD+IL+S+GQI+YQGP + V FF S+GF CP RK +ADFLQ
Sbjct: 358 GTTVISLLQPSPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPDRKNVADFLQ 417
Query: 241 EVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTT 300
EVTS+KDQ+QYW PYR+V +F AF+S+ G+KL +L +PFDK+ +H AAL+T
Sbjct: 418 EVTSKKDQQQYWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALST 477
Query: 301 RKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDG 360
+YGV K ELLK F+ + LMK+N+F+Y+F+ Q++ +A+I MT+F RT MH +++ DG
Sbjct: 478 SQYGVKKSELLKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDDG 537
Query: 361 VIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIV 420
IY G+L+F + I FNG E+ M +AKLPV YK RDL FYPSWAY LP+W+L IP SI+
Sbjct: 538 NIYLGSLYFSMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSII 597
Query: 421 EVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTXXXXX 480
E + WV +TYY IG+D RF +Q+LL ++QMS +FR++ ++GR M+VANT
Sbjct: 598 ESATWVAVTYYTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGSFA 657
Query: 481 XXXXXXXXXXXXXRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKILPNKTKP-LG 539
RD I WW WGYW SPLMYAQNA VNEFLG++W+K N T LG
Sbjct: 658 MLVVMTLGGFIISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNWQKTAGNHTSDSLG 717
Query: 540 IEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTEH 599
+ +L R F+ YWYW+GV AL G+ +LF FTL L+ LNP+G +A +S E
Sbjct: 718 LALLKERSLFSGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPWGKFQAVVSREELDERE 777
Query: 600 DSRTG 604
R G
Sbjct: 778 KKRKG 782
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1745 (619.3 bits), Expect = 0., Sum P(3) = 0.
Identities = 326/607 (53%), Positives = 430/607 (70%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQ 60
+LALAGKLD SLK +G+VTYNGH + EFVPQ+T+AYISQ+D+H+G MTV+ETL FSARCQ
Sbjct: 190 LLALAGKLDQSLKVTGRVTYNGHGLEEFVPQKTSAYISQNDVHVGVMTVQETLDFSARCQ 249
Query: 61 GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADT 120
GVG+RYD+L EL RREK A I+P+ ++D+FMK++ ++++ITDY L++L LD+C DT
Sbjct: 250 GVGTRYDLLSELVRREKDAGILPEPEVDLFMKSIAAGNVKSSLITDYTLRILGLDICKDT 309
Query: 121 VVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILN 180
VVGDEM+RGISGGQ+KRVTTGEM+VGP LFMDEISTGLDSSTT+ IV L + +
Sbjct: 310 VVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQEIVRFTD 369
Query: 181 GTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQ 240
T L+SLLQPAPE + LFDDIIL+S+GQIVYQGP +HV FF + GFKCP RKG ADFLQ
Sbjct: 370 ATVLMSLLQPAPETFELFDDIILLSEGQIVYQGPRDHVLTFFETCGFKCPDRKGTADFLQ 429
Query: 241 EVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTT 300
EVTSRKDQEQYW + +PY +++V EF F++FHVG L +L +P+D+ SHPA+L
Sbjct: 430 EVTSRKDQEQYWADSKKPYSYISVSEFSKRFRTFHVGANLEKDLSVPYDRFKSHPASLVF 489
Query: 301 RKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDG 360
+K+ V K +L K C+ RE LLMKRN+F YI + Q++ +A+I T++LRT+M + +DG
Sbjct: 490 KKHSVPKSQLFKVCWDRELLLMKRNAFFYITKTVQIIIMALIASTVYLRTEMGTKNESDG 549
Query: 361 VIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIV 420
+Y GAL F + FNG AE+++ I +LPVFYKQRDL F+P W ++LP ++L IPISI
Sbjct: 550 AVYIGALMFSMIVNMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFSLPTFLLGIPISIF 609
Query: 421 EVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTXXXXX 480
E VWV +TYY+IGF RF K L++ + QM+ +FR IAA RSM++ANT
Sbjct: 610 ESVVWVTITYYMIGFAPELSRFLKHLLVIFLTQQMAGGIFRFIAATCRSMILANTGGALV 669
Query: 481 XXXXXXXXXXXXXRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSW-KKILPNKTKPLG 539
R +I KWWKW YW SP+ Y +A+ VNE L W + + + LG
Sbjct: 670 ILLLFLLGGFIVPRGEIPKWWKWAYWVSPMAYTYDALTVNEMLAPRWINQPSSDNSTSLG 729
Query: 540 IEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTEH 599
+ VL+ FTD WYW+GVG + GF +LF TLAL+FLNP +A +S+E+ TE
Sbjct: 730 LAVLEIFDIFTDPNWYWIGVGGILGFTVLFNILVTLALTFLNPLEKQQAVVSKEN--TEE 787
Query: 600 DSRTGGT 606
+ G+
Sbjct: 788 NRAENGS 794
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1569 (557.4 bits), Expect = 0., Sum P(3) = 0.
Identities = 324/710 (45%), Positives = 450/710 (63%)
Query: 3 ALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGV 62
AL+G L+++LK G+++YNGH ++E VPQ+T+AYISQHD+HI EMT RET+ FSARCQGV
Sbjct: 184 ALSGNLENNLKCYGEISYNGHGLNEVVPQKTSAYISQHDLHIAEMTTRETIDFSARCQGV 243
Query: 63 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVV 122
GSR D+++E+S+REK IIPD +ID +MKA+ +G + ++ TDYILK+L LD+CA+T+V
Sbjct: 244 GSRTDIMMEVSKREKDGGIIPDPEIDAYMKAISVKGLKRSLQTDYILKILGLDICAETLV 303
Query: 123 GDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGT 182
G+ M RGISGGQ+KR+TT EM+VGP ALFMDEI+ GLDSST F I+ SL Q HI N T
Sbjct: 304 GNAMKRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIIKSLQQVAHITNAT 363
Query: 183 ALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQEV 242
+SLLQPAPE Y+LFDDI+L+++G+IVY GP + V +FF GF+CP+RKG+ADFLQEV
Sbjct: 364 VFVSLLQPAPESYDLFDDIVLMAEGKIVYHGPRDDVLKFFEECGFQCPERKGVADFLQEV 423
Query: 243 TSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTTRK 302
S+KDQ QYW+ + P+ FV+V F+ +GRK+ + L P+D +H AL+
Sbjct: 424 ISKKDQGQYWLHQNLPHSFVSVDTLSKRFKDLEIGRKIEEALSKPYDISKTHKDALSFNV 483
Query: 303 YGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVI 362
Y + K EL +AC SRE LLMKRN FVY+F+ Q++ A+I MT+F+RT+M D + G
Sbjct: 484 YSLPKWELFRACISREFLLMKRNYFVYLFKTFQLVLAAIITMTVFIRTRMDID-IIHGNS 542
Query: 363 YTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIVEV 422
Y LFF + +G+ E+SMT+ +L VFYKQ+ L FYP+WAYA+PA +LKIP+S E
Sbjct: 543 YMSCLFFATVVLLVDGIPELSMTVQRLSVFYKQKQLCFYPAWAYAIPATVLKIPLSFFES 602
Query: 423 SVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTXXXXXXX 482
VW +TYYVIG+ RFF+Q+++L V+ S +MFR IAA+ ++ V A T
Sbjct: 603 LVWTCLTYYVIGYTPEPYRFFRQFMILFAVHFTSISMFRCIAAIFQTGVAAMTAGSFVML 662
Query: 483 XXXXXXXXXXXRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKILPNKTKPLGIEV 542
D+ W KWG+W +P+ YA+ + VNEFL W+K+ P LG +
Sbjct: 663 ITFVFAGFAIPYTDMPGWLKWGFWVNPISYAEIGLSVNEFLAPRWQKMQPTNVT-LGRTI 721
Query: 543 LDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTEHDSR 602
L+SRG D Y YW+ + AL G I+F FTLALSFL +S+ IS++ S E
Sbjct: 722 LESRGLNYDDYMYWVSLSALLGLTIIFNTIFTLALSFLKSPTSSRPMISQDKLS-ELQGT 780
Query: 603 TGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIETDQP-KNRGMVLPFEPFSL 661
+V+ + +SS + + + + ++ D P + +G + L
Sbjct: 781 KDSSVKKNKPLDSSIKTNEDPGKMILPFKPLTITFQDLNYYVDVPVEMKGQGYNEKKLQL 840
Query: 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSG 711
EIT + R GV L L G+SGA + +L L G SG
Sbjct: 841 -LSEITGAF-------RPGV----LTALMGISGAGKTTLLDVLAGRKTSG 878
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1555 (552.4 bits), Expect = 0., Sum P(3) = 0.
Identities = 292/594 (49%), Positives = 405/594 (68%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQ 60
+LALAGKLD SLK +G +TYNG ++++F +RT+AYISQ D HI E+TVRETL F+ARCQ
Sbjct: 203 LLALAGKLDKSLKKTGNITYNGENLNKFHVKRTSAYISQTDNHIAELTVRETLDFAARCQ 262
Query: 61 GVGSRY-DMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCAD 119
G + + +L+R EK I P ++ID FMKA +G++ +V TDY+LKVL LDVC+D
Sbjct: 263 GASEGFAGYMKDLTRLEKERGIRPSSEIDAFMKAASVKGEKHSVSTDYVLKVLGLDVCSD 322
Query: 120 TVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHIL 179
T+VG++M+RG+SGGQRKRVTTGEM VGP LFMDEISTGLDSSTTF IV + F H++
Sbjct: 323 TMVGNDMMRGVSGGQRKRVTTGEMTVGPRKTLFMDEISTGLDSSTTFQIVKCIRNFVHLM 382
Query: 180 NGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFL 239
+ T L++LLQPAPE ++LFDD+IL+S+G +VYQGP E V FF S+GF+ P RKG+ADFL
Sbjct: 383 DATVLMALLQPAPETFDLFDDLILLSEGYMVYQGPREDVIAFFESLGFRLPPRKGVADFL 442
Query: 240 QEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALT 299
QEVTS+KDQ QYW +PY+F+ V + AF++ G +L PFDKK++ P+AL
Sbjct: 443 QEVTSKKDQAQYWADPSKPYQFIPVSDIAAAFRNSKYGHAADSKLAAPFDKKSADPSALC 502
Query: 300 TRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTD 359
K+ + E LK CF RE LL+KR+ F+Y FR QV F+ ++ T+FL+T++H S
Sbjct: 503 RTKFAISGWENLKVCFVRELLLIKRHKFLYTFRTCQVGFVGLVTATVFLKTRLHPTSEQF 562
Query: 360 GVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISI 419
G Y LFF L + FNG +E+ + I++LPVFYKQRD F+P+W++++ +W+L++P S+
Sbjct: 563 GNEYLSCLFFGLVHMMFNGFSELPLMISRLPVFYKQRDNSFHPAWSWSIASWLLRVPYSV 622
Query: 420 VEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTXXXX 479
+E VW + Y+ +G +AGRFF+ LLL V+QM+ +FR++A++ R MV+ANT
Sbjct: 623 LEAVVWSGVVYFTVGLAPSAGRFFRYMLLLFSVHQMALGLFRMMASLARDMVIANTFGSA 682
Query: 480 XXXXXXXXXXXXXXRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKILPNKTKPLG 539
+ DIK WW WG+W SPL Y Q AI VNEF W +G
Sbjct: 683 AILIVFLLGGFVIPKADIKPWWVWGFWVSPLSYGQRAIAVNEFTATRWMTPSAISDTTIG 742
Query: 540 IEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEE 593
+ +L R F T+ YWYW+G+ L G+ ILF TLAL++LNP ++A + ++
Sbjct: 743 LNLLKLRSFPTNDYWYWIGIAVLIGYAILFNNVVTLALAYLNPLRKARAVVLDD 796
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1590 (564.8 bits), Expect = 2.2e-244, Sum P(2) = 2.2e-244
Identities = 331/711 (46%), Positives = 451/711 (63%)
Query: 3 ALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGV 62
AL+G L+++LK SG+++YNGH + EFVPQ+T+AYISQ+D+HI EMTVRET+ FSARCQGV
Sbjct: 219 ALSGNLENNLKCSGEISYNGHRLDEFVPQKTSAYISQYDLHIAEMTVRETVDFSARCQGV 278
Query: 63 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVV 122
GSR D+++E+S+REK IIPD ++D +MKA+ EG + ++ TDYILK+L LD+CA+ ++
Sbjct: 279 GSRTDIMMEVSKREKEKGIIPDTEVDAYMKAISVEGLQRSLQTDYILKILGLDICAEILI 338
Query: 123 GDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGT 182
GD M RGISGGQ+KR+TT EM+VGP ALFMDEI+ GLDSST F IV SL QF HI + T
Sbjct: 339 GDVMRRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIVKSLQQFAHISSAT 398
Query: 183 ALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQEV 242
L+SLLQPAPE Y+LFDDI+L++ G+IVY GP V FF GF+CP+RKG+ADFLQEV
Sbjct: 399 VLVSLLQPAPESYDLFDDIMLMAKGRIVYHGPRGEVLNFFEDCGFRCPERKGVADFLQEV 458
Query: 243 TSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTTRK 302
S+KDQ QYW D PY FV+V+ F+ +G+K+ D L P+D+ SH AL+
Sbjct: 459 ISKKDQAQYWWHEDLPYSFVSVEMLSKKFKDLSIGKKIEDTLSKPYDRSKSHKDALSFSV 518
Query: 303 YGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVI 362
Y + EL AC SRE+LLMKRN FVYIF+ Q++ A I MT+F+RT+M D + G
Sbjct: 519 YSLPNWELFIACISREYLLMKRNYFVYIFKTAQLVMAAFITMTVFIRTRMGID-IIHGNS 577
Query: 363 YTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIVEV 422
Y ALFF L + +G E+SMT +L VFYKQ+ L FYP+WAYA+PA +LK+P+S E
Sbjct: 578 YMSALFFALIILLVDGFPELSMTAQRLAVFYKQKQLCFYPAWAYAIPATVLKVPLSFFES 637
Query: 423 SVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTXXXXXXX 482
VW ++YYVIG+ A RFFKQ++LL V+ S +MFR +AA+ +++V + T
Sbjct: 638 LVWTCLSYYVIGYTPEASRFFKQFILLFAVHFTSISMFRCLAAIFQTVVASITAGSFGIL 697
Query: 483 XXXXXXXXXXXRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKILPNKTKPLGIEV 542
+ W KWG+W +PL Y + + VNEFL W ++ PN LG +
Sbjct: 698 FTFVFAGFVIPPPSMPAWLKWGFWANPLSYGEIGLSVNEFLAPRWNQMQPNNFT-LGRTI 756
Query: 543 LDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTEHDSR 602
L +RG + Y YW+ + AL GF +LF FTLAL+FL +S+A IS++ S E
Sbjct: 757 LQTRGMDYNGYMYWVSLCALLGFTVLFNIIFTLALTFLKSPTSSRAMISQDKLS-ELQGT 815
Query: 603 TGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIETDQPKNRGMVLPFEPFSLT 662
T S ++ ++E D + + T+ T Q N + +P E
Sbjct: 816 EKSTEDSSVRKKTTDSPVKTEEEDKM-----VLPFKPLTV-TFQDLNYFVDMPVEMRDQG 869
Query: 663 FDEITYSV--DMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSG 711
+D+ + D+ R G+ L L GVSGA + +L L G SG
Sbjct: 870 YDQKKLQLLSDITGAF-RPGI----LTALMGVSGAGKTTLLDVLAGRKTSG 915
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q2PCF1 | PDR2_NICPL | No assigned EC number | 0.5869 | 0.9772 | 0.8227 | N/A | no |
| Q0JLC5 | PDR3_ORYSJ | No assigned EC number | 0.6792 | 0.9829 | 0.8297 | yes | no |
| Q9M9E1 | AB40G_ARATH | No assigned EC number | 0.6727 | 0.9739 | 0.8418 | yes | no |
| O24367 | TUR2_SPIPO | No assigned EC number | 0.6624 | 0.9853 | 0.8410 | N/A | no |
| Q76CU2 | PDR1_TOBAC | No assigned EC number | 0.6891 | 0.9780 | 0.8389 | N/A | no |
| Q949G3 | PDR1_NICPL | No assigned EC number | 0.6918 | 0.9756 | 0.8356 | N/A | no |
| A2WSH0 | PDR3_ORYSI | No assigned EC number | 0.6784 | 0.9829 | 0.8297 | N/A | no |
| Q5W274 | PDR3_TOBAC | No assigned EC number | 0.5226 | 0.9756 | 0.8293 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| PtrPDR12 | pleiotropic drug resistance, ABC transporter family protein (1424 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1230 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-90 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-89 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 7e-69 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 8e-61 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-57 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-52 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 2e-52 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 1e-43 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 9e-40 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-37 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-36 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-32 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 6e-32 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 3e-30 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-29 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 4e-28 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 3e-27 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 3e-27 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 6e-26 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-22 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 4e-22 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 9e-22 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-21 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-21 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-21 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 5e-21 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-20 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-20 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 4e-20 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-19 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 3e-19 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 5e-19 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 7e-19 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-18 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 4e-18 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 4e-18 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 6e-18 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 6e-18 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-17 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-17 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 5e-17 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 6e-17 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 7e-17 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-16 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-16 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-16 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-16 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 6e-16 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 6e-16 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 8e-16 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 8e-16 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-15 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-15 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-15 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 4e-15 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 4e-15 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 5e-15 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 8e-15 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-14 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-14 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-14 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-14 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-14 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-14 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 3e-14 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-14 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 5e-14 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 5e-14 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 6e-14 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 8e-14 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-13 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-13 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-13 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-13 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-13 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-13 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-13 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-13 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 5e-13 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 6e-13 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 6e-13 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 7e-13 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 9e-13 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-12 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-12 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-12 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 1e-12 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-12 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-12 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 4e-12 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 5e-12 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 5e-12 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 5e-12 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 6e-12 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-11 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-11 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-11 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-11 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-11 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 3e-11 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 3e-11 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 4e-11 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 5e-11 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 5e-11 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 5e-11 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 6e-11 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 6e-11 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 6e-11 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 6e-11 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 6e-11 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 8e-11 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 9e-11 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-10 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-10 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 1e-10 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-10 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-10 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-10 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-10 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-10 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-10 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-10 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-10 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-10 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-10 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-10 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 3e-10 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-10 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 4e-10 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 4e-10 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 4e-10 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-10 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 7e-10 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 7e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 8e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 8e-10 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 8e-10 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 8e-10 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 9e-10 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-09 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-09 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-09 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-09 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-09 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-09 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-09 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 5e-09 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 5e-09 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 6e-09 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 6e-09 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 8e-09 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-08 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-08 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-08 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-08 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-08 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-08 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-08 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-08 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-08 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-08 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 4e-08 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 5e-08 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 5e-08 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 5e-08 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 5e-08 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-08 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 6e-08 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 7e-08 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 8e-08 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 8e-08 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 8e-08 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 1e-07 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 1e-07 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-07 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-07 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-07 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-07 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-07 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 3e-07 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 3e-07 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 3e-07 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 3e-07 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-07 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 4e-07 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-07 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 4e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 4e-07 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 6e-07 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 6e-07 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 7e-07 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 8e-07 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 9e-07 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 9e-07 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-06 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-06 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-06 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 1e-06 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-06 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 1e-06 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-06 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-06 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 1e-06 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-06 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 1e-06 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-06 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-06 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-06 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 2e-06 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-06 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-06 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-06 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-06 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-06 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-06 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-06 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 3e-06 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 4e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 4e-06 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 4e-06 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 4e-06 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 4e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 5e-06 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 5e-06 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 5e-06 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 5e-06 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 5e-06 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 6e-06 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 6e-06 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 6e-06 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 6e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 6e-06 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 7e-06 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 7e-06 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 7e-06 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 7e-06 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 8e-06 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 8e-06 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 8e-06 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 8e-06 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 8e-06 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 9e-06 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-05 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-05 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-05 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-05 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-05 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 1e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-05 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-05 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-05 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-05 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-05 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-05 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 2e-05 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-05 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 3e-05 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-05 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 3e-05 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-05 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 4e-05 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 4e-05 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 4e-05 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 5e-05 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 5e-05 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 5e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 5e-05 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 5e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 5e-05 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 6e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 6e-05 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 7e-05 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 7e-05 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 8e-05 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 9e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 9e-05 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 9e-05 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 9e-05 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-04 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-04 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-04 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-04 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-04 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 1e-04 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 1e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-04 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-04 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-04 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-04 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-04 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-04 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-04 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-04 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 2e-04 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 3e-04 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 3e-04 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 3e-04 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 3e-04 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 3e-04 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-04 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 3e-04 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 3e-04 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 4e-04 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 4e-04 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 4e-04 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 4e-04 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 4e-04 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 4e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 5e-04 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 5e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 5e-04 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 7e-04 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 7e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 7e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 7e-04 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 7e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 8e-04 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 0.001 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 0.001 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 0.001 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 0.001 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 0.001 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 0.001 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 0.001 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 0.001 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 0.001 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 0.001 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 0.001 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 0.002 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 0.002 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 0.002 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 0.002 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 0.002 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 0.002 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 0.002 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 0.002 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 0.002 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 0.002 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 0.003 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 0.003 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 0.003 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.003 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 0.003 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 0.003 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 0.003 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 0.003 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 0.004 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 1748 bits (4530), Expect = 0.0
Identities = 741/1264 (58%), Positives = 932/1264 (73%), Gaps = 35/1264 (2%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQ 60
+LALAGKLD SLK SG++TYNG+ ++EFVP++T+AYISQ+D+H+G MTV+ETL FSARCQ
Sbjct: 208 LLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQ 267
Query: 61 GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADT 120
GVG+RYD+L EL+RREK A I P+A++D+FMKA EG ++++ITDY LK+L LD+C DT
Sbjct: 268 GVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDT 327
Query: 121 VVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILN 180
+VGDEM+RGISGGQ+KRVTTGEM+VGP LFMDEISTGLDSSTT+ IV L Q H+
Sbjct: 328 IVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTE 387
Query: 181 GTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQ 240
T L+SLLQPAPE ++LFDDIIL+S+GQIVYQGP +H+ +FF S GFKCP+RKG ADFLQ
Sbjct: 388 ATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQ 447
Query: 241 EVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTT 300
EVTS+KDQEQYW ++PYR+++V EF F+SFHVG +L +EL +PFDK SH AAL
Sbjct: 448 EVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVF 507
Query: 301 RKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDG 360
KY V K ELLKAC+ +E LLMKRN+FVY+F+ Q++ +A I T+FLRT+MH + DG
Sbjct: 508 SKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDG 567
Query: 361 VIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIV 420
+Y GAL F + FNG AE+++ I +LPVFYKQRDL F+P W + LP ++L IPISI+
Sbjct: 568 ALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISII 627
Query: 421 EVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTFGSLV 480
E VWV +TYY IGF A RFFKQ LL+ ++ QM++ +FRLIA+V R+M++ANT G+LV
Sbjct: 628 ESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALV 687
Query: 481 LLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSW-KKILPNKTKPLG 539
LLL+F+LGGF+L + +I WW+W YW SPL Y NA+ VNE W K+ + + LG
Sbjct: 688 LLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLG 747
Query: 540 IEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTEH 599
VL+ FTD WYW+GVGAL GF ILF FTLAL++LNP G +A ISEE+
Sbjct: 748 TAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEME 807
Query: 600 DSRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIETDQPKNRGMVLPFEPF 659
LS+ +++ + + + S PK RGMVLPF P
Sbjct: 808 GEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAANGVAPK-RGMVLPFTPL 866
Query: 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVL 719
+++FD++ Y VDMP EMK +GV +D+L LL V+GAFRPGVLTALMGV+G+GKTTLMDVL
Sbjct: 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVL 926
Query: 720 AGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEV 779
AGRKT GYI G+I ISG+PK QETF RISGYCEQNDIHSP VTV ESL+YSA+LRL EV
Sbjct: 927 AGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEV 986
Query: 780 NSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 839
+ + + MFV+EVMELVEL+ L+ A+VGLPGV GLSTEQRKRLTIAVELVANPSIIFMDEP
Sbjct: 987 SKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEP 1046
Query: 840 TSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD------------------ 881
TSGLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD
Sbjct: 1047 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLG 1106
Query: 882 ----------AGIPGVSKIRDGYNPATWMLEVTAPSQEIALGVDFAAIYKSSELYRINKA 931
IPGV KI++ YNPATWMLEV++ + E+ LG+DFA YKSS LY+ NKA
Sbjct: 1107 RNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKA 1166
Query: 932 LIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHYTAVRFLFTIFISLI 991
L++ELS P PG+ +LYFA QY S + Q +CLWKQ W+Y R+P Y VRF FT+ +L+
Sbjct: 1167 LVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALM 1226
Query: 992 FGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMY 1051
GT+FW +GTK + DL +G MY AV F+G+ N S+VQP+V +ER+VFYRE+ AGMY
Sbjct: 1227 VGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMY 1286
Query: 1052 SPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGM 1111
S + YA AQV+ EIPY+ +Q Y+LIVYAM+ FEWTAAKFFWF F FFS LYFT++GM
Sbjct: 1287 SALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGM 1346
Query: 1112 MLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQ 1171
M V+ TPN +A+I + FYGL+N+ SGF IPR +IP WW W YW P+AWT+YG SQ
Sbjct: 1347 MTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQ 1406
Query: 1172 FGDVQDRLE-----SGETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLN 1226
+GDV+D ++ T+K +++ +YG+ DF+G VAAV+ FAF+FA IR LN
Sbjct: 1407 YGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLN 1466
Query: 1227 FQKR 1230
FQ R
Sbjct: 1467 FQTR 1470
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 1010 bits (2612), Expect = 0.0
Identities = 373/1356 (27%), Positives = 596/1356 (43%), Gaps = 196/1356 (14%)
Query: 1 MLALAGKLDSSLKA-SGKVTYNGHDMHEFVPQRTA--AYISQHDIHIGEMTVRETLAFSA 57
+ +A D G +TY+G E Y ++ D+H +TV ETL F+A
Sbjct: 104 LKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAA 163
Query: 58 RCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVC 117
RC+ +R D + + I D + L
Sbjct: 164 RCKTPQNRPDGVSREEYAKH--------------------------IADVYMATYGLSHT 197
Query: 118 ADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNH 177
+T VG++ +RG+SGG+RKRV+ E +G A D + GLDS+T + +L +
Sbjct: 198 RNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSAN 257
Query: 178 ILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIAD 237
IL+ T L+++ Q + + Y LFD +I++ +G +Y GP + +Q+F MGFKCP R+ AD
Sbjct: 258 ILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTAD 317
Query: 238 FLQEVTSRKDQEQYWVRNDEP-YRFVTVKEFVHAFQSFHVGRKLGDELGIPFDK------ 290
FL +TS + Q ++ R T +EF +++ +L E+ D+
Sbjct: 318 FLTSLTSPA-ERQIKPGYEKKVPR--TPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDT 374
Query: 291 ----KNSHPA-----ALTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAV 341
+ SH A + Y V +K C +R L MK N +F + + +A+
Sbjct: 375 KEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMAL 434
Query: 342 IGMTIFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFY 401
I ++F + +D GALFF + F+ + EI+ P+ K R Y
Sbjct: 435 ILSSVFYNLPK---NTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALY 491
Query: 402 PSWAYALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFR 461
A A+ + I +IP I+E V+ + Y+++ F AGRFF L+L I S +FR
Sbjct: 492 HPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFR 551
Query: 462 LIAAVGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNE 521
I AV +++ A T +++LL L + GF + R + W KW Y+ +PL YA +++VNE
Sbjct: 552 SIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNE 611
Query: 522 FLGNSW--KKILP-----------NKTKPL-----GIEVLDSRGFFTDAY-----WYWLG 558
F G + + +P NK + G + +D + ++ W
Sbjct: 612 FHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRN 671
Query: 559 VGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTEHDSRTGGTVQLSTCANSSSH 618
G + GF + F F + L F +
Sbjct: 672 FGIIIGFTVFFFFVYILLTEFNKGAKQKGEILVFR------------------------- 706
Query: 619 ITRSESRDYVRRRNSSSQSRETTIETDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKR 678
R + ++ +S S + IE G VL + D++ DM +E
Sbjct: 707 --RGSLKR-AKKAGETSASNKNDIE------AGEVLGSTDLTDESDDVNDEKDMEKESGE 757
Query: 679 R-----------GVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY 727
+ +K V+LN V G +PG LTALMG +G+GKTTL++VLA R T G
Sbjct: 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGV 817
Query: 728 ITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMF 787
ITG + +F R GY +Q D+H P TV ESL +SA+LR V+ + +
Sbjct: 818 ITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEY 877
Query: 788 VEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDAR 846
VEEV++L+E+ A+VG+PG GL+ EQRKRLTI VELVA P ++F+DEPTSGLD++
Sbjct: 878 VEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQ 936
Query: 847 AAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD-------------AG---------- 883
A + + +R D G+ ++CTIHQPS +FE FD G
Sbjct: 937 TAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTII 996
Query: 884 ----IPGVSKIRDGYNPATWMLEVTAPSQEIALGVDFAAIYKSSELYRINKALIQELSKP 939
G K + NPA WMLEV + D+ ++++S Y+ K + L
Sbjct: 997 NYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAE 1056
Query: 940 APGSKELYFAN---QYPLSFFTQCMACLWKQHWSYSRNPHYTAVRFLFTIFISLIFGTMF 996
+++ + +Y S + Q LW+ Y R P Y +F TIF +L G F
Sbjct: 1057 LSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTF 1116
Query: 997 WDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAY 1056
+ +GT Q L N M +++A L + P V RE+ + +S +A+
Sbjct: 1117 FKVGTSL---QGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAF 1173
Query: 1057 AFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAK-------FFWFLFFMFFSLLYFTFF 1109
AQ+ +EIPY V + I Y +GF W A+K F LYF+
Sbjct: 1174 IAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTL 1233
Query: 1110 GMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFA 1169
G M++++ PN A+++++L + + G + P +R+P +W + Y +P + + +
Sbjct: 1234 GQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLS 1293
Query: 1170 SQFGDVQDRLE----------SGETVKQFLRSY---------------------YGFKHD 1198
+ DV + SG+T ++++ Y Y + +D
Sbjct: 1294 TGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTND 1353
Query: 1199 FLGAVAAVVFVLPSLF----AFVFALGIRVLNFQKR 1230
FL +++ F AF+F I + F
Sbjct: 1354 FLEPISSKYSGRWRNFGIFIAFIFFNIIATVFFYWL 1389
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 305 bits (782), Expect = 1e-90
Identities = 166/525 (31%), Positives = 256/525 (48%), Gaps = 42/525 (8%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY-ITGNITISGYPKNQETFTR 746
LL VSG +PG L A+MG +G+GKTTLM+ LA R +G +G++ ++G P + +
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRA 99
Query: 747 ISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVG 806
IS Y +Q+D+ P +TV E L++ A LR+ V K + V+EV++ + L +G
Sbjct: 100 ISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIG 159
Query: 807 LPG-VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTV 865
+PG V GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ ++ G+T+
Sbjct: 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTI 219
Query: 866 VCTIHQPSIDIFEAFD------------AGIPG--VSKIRDG-------YNPATWMLEVT 904
+CTIHQPS ++FE FD G P V D YNPA + ++V
Sbjct: 220 ICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVL 279
Query: 905 A--PSQEIALGVDFAAI---YKSSELYRINKALIQELSKPAPG---SKELYFANQYPLSF 956
A P E I + S++ R S A G E Y S+
Sbjct: 280 AVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASW 339
Query: 957 FTQCMACLWKQHW-SYSRNPHYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGF 1015
+TQ L K+ W S R+P VR + T+ +++ G ++ G Q+ + N G
Sbjct: 340 WTQ-FYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLT---QKGVQNINGA 395
Query: 1016 MYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPY 1075
+++ + + NV V V E VF RE +G+Y AY A+ + E+P + A +
Sbjct: 396 LFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALF 455
Query: 1076 SLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWN 1135
+ I Y MIG A F FLF + T FG ++ + +A V F +
Sbjct: 456 TSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFL 515
Query: 1136 IVSGFIIPRTRIPVWWRWSYWANPIAWTLYGF---FASQFGDVQD 1177
+ GF I IPV+++W + ++W YG +Q+ DV +
Sbjct: 516 LFGGFFINSDSIPVYFKWLSY---LSWFRYGNEGLLINQWSDVDN 557
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 286 bits (733), Expect = 2e-89
Identities = 101/224 (45%), Positives = 132/224 (58%), Gaps = 47/224 (20%)
Query: 658 PFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMD 717
LT+ + Y+V + ++ LLN +SG +PG LTALMG +G+GKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVKGGKRQ---------LLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 718 VLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSS 777
VLAGRKT G ITG I I+G P + + F R +GY EQ D+HSP +TV E+L +SA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 778 EVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 837
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 838 EPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 881
EPTSGLD++AA ++R ++ D+G+ ++CTIHQPS IFE FD
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFD 177
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 228 bits (585), Expect = 7e-69
Identities = 88/222 (39%), Positives = 129/222 (58%), Gaps = 44/222 (19%)
Query: 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVL 719
+L+F +T +V LL VSG +PG LTA+MG +G+GK+TL++ L
Sbjct: 3 TLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNAL 55
Query: 720 AGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEV 779
AGR+T ++G + I+G P ++ +F +I GY Q+DI P +TV E+L+++A LR
Sbjct: 56 AGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR----- 110
Query: 780 NSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 839
GLS +RKR++IA+ELV+NPS++F+DEP
Sbjct: 111 --------------------------------GLSGGERKRVSIALELVSNPSLLFLDEP 138
Query: 840 TSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 881
TSGLD+ +A VM +R DTGRT++C+IHQPS +IFE FD
Sbjct: 139 TSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFD 180
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 219 bits (561), Expect = 8e-61
Identities = 153/597 (25%), Positives = 258/597 (43%), Gaps = 75/597 (12%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQ 60
M ALA + +K SG V NG + + +AY+ Q D+ I +TVRE L F A +
Sbjct: 68 MNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLR 127
Query: 61 GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADT 120
M ++++EK ++ D +L+ L L CA+T
Sbjct: 128 -------MPRRVTKKEKRERV------------------------DEVLQALGLRKCANT 156
Query: 121 VVGDE-MLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHIL 179
+G ++G+SGG+RKR+ L+ LF DE ++GLDS + +V L +
Sbjct: 157 RIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVL---KGLA 213
Query: 180 NG--TALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIAD 237
T + ++ QP+ E++ LFD IIL+++G++ Y G + FF +G CP+ AD
Sbjct: 214 QKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPAD 273
Query: 238 FLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHA-FQSFHVGRKLGDELGIPFDKKNSHPA 296
F +V + P +E + SF V D L S A
Sbjct: 274 FYVQVLA-----------VIPGSENESRERIEKICDSFAVSDIGRDMLVNTN--LWSGKA 320
Query: 297 A-LTTRKYGVGKKELLKACFSREHLLMKRNSFVYIFR---LTQVMFLAVIGMTIFLRTKM 352
L + + +++ + L+KR S++ + R L +V + + I +
Sbjct: 321 GGLVKDSENMEGIGYNASWWTQFYALLKR-SWLSVLRDPLLLKVRLIQTMMTAILIGLIY 379
Query: 353 HRDSLT-DGVIYT-GALFFILTTITFNGMAEISMTI-AKLPVFYKQRDLRFYPSWAYALP 409
LT GV GALF LT +TF + + A+LPVF ++ Y AY L
Sbjct: 380 LGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLA 439
Query: 410 AWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRS 469
I ++P+ I+ +++ +TY++IG S A F L+ +V ++++ LI+ S
Sbjct: 440 KTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSS 499
Query: 470 MVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKK 529
+A T G ++ + GGF ++ D I ++KW + S Y +++N+ W
Sbjct: 500 TSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQ-----WSD 554
Query: 530 ILP------NKTKPL---GIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLAL 577
+ N T P G +L++ F +L + L I F+ AL
Sbjct: 555 VDNIECTSANTTGPCPSSGEVILETLSFRNAD--LYLDLIGLVILIFFFRLLAYFAL 609
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 218 bits (556), Expect = 2e-57
Identities = 128/558 (22%), Positives = 243/558 (43%), Gaps = 82/558 (14%)
Query: 682 HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY---ITGNITISGYP 738
+L + G +PG LT ++G GSG +TL+ +A T G+ + G IT G
Sbjct: 70 DTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIAS-NTDGFHIGVEGVITYDGIT 128
Query: 739 KNQ--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRL-SSEVNSKTREMFVEEVMELV 795
+ + + Y + D+H P++TV E+L ++A + + + +RE + + + ++
Sbjct: 129 PEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVY 188
Query: 796 E----LNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 851
L+ R VG V G+S +RKR++IA + I D T GLD+ A
Sbjct: 189 MATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEF 248
Query: 852 MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDAGIPGVSKIRDGY---------------- 894
+R ++ + + T + I+Q S D +E FD V + +GY
Sbjct: 249 IRALKTSANILDTTPLVAIYQCSQDAYELFDK----VIVLYEGYQIYFGPADKAKQYFEK 304
Query: 895 ---------NPATWMLEVTAPSQEIALG----------VDFAAIYKSSELYRINKALIQE 935
A ++ +T+P++ +F +++S Y L++E
Sbjct: 305 MGFKCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEY---AQLMKE 361
Query: 936 LSKP-----APGSKELYF-------------ANQYPLSFFTQCMACLWKQHWSYSRNPHY 977
+ + +KE Y ++ Y +SF Q CL + NP +
Sbjct: 362 IDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSF 421
Query: 978 TAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYF---LGVLNVSSVQPV 1034
T I ++LI ++F+++ T+ D ++ G ++ A+ F +L ++S+
Sbjct: 422 TLFMVFGNIIMALILSSVFYNLPKNTS---DFYSRGGALFFAILFNAFSSLLEIASMYE- 477
Query: 1035 VDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFW 1094
R + + + +Y P A A A ++ EIP+ +++ +++I+Y M+ F TA +FF+
Sbjct: 478 ---ARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFF 534
Query: 1095 FLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWS 1154
+L +F L + + A T A + + +I +GF IPR + W +W
Sbjct: 535 YLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWI 594
Query: 1155 YWANPIAWTLYGFFASQF 1172
Y+ NP+A+ ++F
Sbjct: 595 YYVNPLAYAFESLMVNEF 612
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 184 bits (468), Expect = 1e-52
Identities = 75/200 (37%), Positives = 115/200 (57%), Gaps = 5/200 (2%)
Query: 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT-GNITISGYPKNQ 741
+ +LN VS G + A++G +GSGKTTL+D ++GR G T G I +G P+
Sbjct: 17 NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP 76
Query: 742 ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR 801
+ F + Y Q+DI P +TV E+L Y+A LRL + + R+ E + L +L R
Sbjct: 77 DQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKK-RVEDVLLRDLALTR 135
Query: 802 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT 861
+G V G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A ++ T+
Sbjct: 136 ---IGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR 192
Query: 862 GRTVVCTIHQPSIDIFEAFD 881
R V+ TIHQP D+F FD
Sbjct: 193 NRIVILTIHQPRSDLFRLFD 212
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 182 bits (465), Expect = 2e-52
Identities = 64/216 (29%), Positives = 111/216 (51%), Gaps = 7/216 (3%)
Query: 958 TQCMACLWKQHWSYSRNPHYT-AVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFM 1016
TQ A L ++ R+P R + + ++L+FGT+F ++ T N G +
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDT----SLGGLNRPGLL 56
Query: 1017 YVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYS 1076
+ ++ F +++ + PV ER V RE + +YSP AY A++L+E+P +QA +
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 1077 LIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNI 1136
LIVY M+G + +FF FL + + L + G+ + A P+ AS + L +
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 1137 VSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQF 1172
+SGF IP +P W +W Y+ NP+ + + A++F
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 1e-43
Identities = 65/216 (30%), Positives = 111/216 (51%), Gaps = 8/216 (3%)
Query: 309 ELLKACFSREHLLMKRNSFV-YIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVIYTGAL 367
LKA RE L R+ + ++RL Q + +A++ T+F D+ G+ G L
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNL----DTSLGGLNRPGLL 56
Query: 368 FFILTTITFNGMAEISMT-IAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIVEVSVWV 426
FF + F+ + IS I + V ++ Y AY L ++++PIS+++ +++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 427 FMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTFGSLVLLLLFV 486
+ Y+++G + RFF L+LL+ +S + IAA+ S A+ G L+LL L +
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 487 LGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEF 522
L GF + D + W +W Y+ +PL YA A+ NEF
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 9e-40
Identities = 61/201 (30%), Positives = 92/201 (45%), Gaps = 12/201 (5%)
Query: 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP--KN 740
L+GVS PG + L+G G+GKTTL+ +LAG +G I + GY K
Sbjct: 15 GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKE 72
Query: 741 QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 800
R GY Q P +TV E+L + A L S+ ++ R +EE++EL L
Sbjct: 73 PAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELFGLEDK 129
Query: 801 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD 860
V LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + +R
Sbjct: 130 ANKKVR-----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAK 184
Query: 861 TGRTVVCTIHQPSIDIFEAFD 881
G + + E D
Sbjct: 185 EGGVTILLSTHILEEAEELCD 205
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 1e-37
Identities = 38/91 (41%), Positives = 57/91 (62%)
Query: 123 GDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGT 182
G+E +RGISGG+RKRV+ E LV A L D + GLDSST I+ + +L T
Sbjct: 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 183 ALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213
+SL Q + E+Y+LFD ++++ +G+ +Y G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 2e-36
Identities = 79/242 (32%), Positives = 138/242 (57%), Gaps = 19/242 (7%)
Query: 658 PFSLTFDEITYSVDMPQEMKRRGVHDDKLV-----------------LLNGVSGAFRPGV 700
P +L F ++ Y V + MK +G + +++ +LNGV+G PG
Sbjct: 37 PITLKFMDVCYRVKF-ENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGE 95
Query: 701 LTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPY 760
+ A++G +GSGK+TL++ LAGR TG I + ++ R G+ Q+DI P+
Sbjct: 96 ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT-GFVTQDDILYPH 154
Query: 761 VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 820
+TV E+L++ + LRL + + + + E V+ + L ++G + G+S +RKR
Sbjct: 155 LTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKR 214
Query: 821 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 880
++IA E++ NPS++ +DEPTSGLDA AA ++ T+ + G+T+V ++HQPS +++ F
Sbjct: 215 VSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274
Query: 881 DA 882
D+
Sbjct: 275 DS 276
|
Length = 659 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 2e-32
Identities = 141/561 (25%), Positives = 249/561 (44%), Gaps = 90/561 (16%)
Query: 685 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY-ITGNITISGYPKNQET 743
KL +L SG +P +T L+G SGKTTL+ LAG+ ++G IT +GY N+
Sbjct: 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV 236
Query: 744 FTRISGYCEQNDIHSPYVTVYESLLYSAWLR-------LSSEVNSKTRE----------- 785
+ S Y QND+H +TV E+L +SA + L SE+ + ++
Sbjct: 237 PRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDL 296
Query: 786 -------------MFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPS 832
+ + ++++ L+ + +VG + G+S Q+KR+T +V
Sbjct: 297 FMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTK 356
Query: 833 IIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDAGIPGVSKIR 891
+FMDE ++GLD+ +++ ++ V T TV+ ++ QP+ + F+ FD I +S+ +
Sbjct: 357 TLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFD-DIILLSEGQ 415
Query: 892 DGYN----------------------PATWMLEVTAPSQEIALGVD------------FA 917
Y A ++ EVT+ + D FA
Sbjct: 416 IVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFA 475
Query: 918 AIYKSSELYRINKALIQELSKPAPGSK----ELYFANQYPLSFFTQCMACLWKQHWSY-S 972
+KS + + L ELS P S+ L F ++Y + AC W + W
Sbjct: 476 ERFKS---FHVGMQLENELSVPFDKSQSHKAALVF-SKYSVPKMELLKAC-WDKEWLLMK 530
Query: 973 RNPHYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYV-AVYFLGVLNVSS- 1030
RN + + I ++ I T+F T ++D G +Y+ A+ F ++N+ +
Sbjct: 531 RNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEED-----GALYIGALLFSMIINMFNG 585
Query: 1031 -VQPVVDLER-SVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWT 1088
+ + ++R VFY+++ + P + L+ IP +++ + +I Y IGF
Sbjct: 586 FAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPE 645
Query: 1089 AAKFFWFLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIP 1148
A++FF L +F ++ + IA+ L L ++ GFI+P+ IP
Sbjct: 646 ASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIP 705
Query: 1149 VWWRWSYWANPIAWTLYGFFA 1169
WW W+YW +P++ YGF A
Sbjct: 706 NWWEWAYWVSPLS---YGFNA 723
|
Length = 1470 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 6e-32
Identities = 60/212 (28%), Positives = 102/212 (48%), Gaps = 38/212 (17%)
Query: 3 ALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGV 62
A++G+++ SG++ +NG Q+ AY+ Q DI + +TVRETL ++A
Sbjct: 52 AISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAIL--- 108
Query: 63 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVV 122
R+ + I V A T +
Sbjct: 109 ---------RLPRKSSDA------IRKKRVEDVLLRD-----------------LALTRI 136
Query: 123 GDEMLRGISGGQRKRVTTG-EMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNG 181
G +++GISGG+R+RV+ ++L P L +DE ++GLDS T ++V++L Q N
Sbjct: 137 GGNLVKGISGGERRRVSIAVQLLWDPK-VLILDEPTSGLDSFTALNLVSTLSQLAR-RNR 194
Query: 182 TALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213
++++ QP +++ LFD I+L+S G+IVY G
Sbjct: 195 IVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 3e-30
Identities = 56/215 (26%), Positives = 97/215 (45%), Gaps = 39/215 (18%)
Query: 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGR-KTRGYITGNITISGYP--KN 740
K+ +L SG +PG + ++G GSG +TL+ LA R + + G+I +G P +
Sbjct: 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEF 77
Query: 741 QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 800
E + Y + D+H P +TV E+L ++ +
Sbjct: 78 AEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK-------------------------- 111
Query: 801 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD 860
G V G+S +RKR++IA LV+ S++ D T GLD+ A +++ +R D
Sbjct: 112 -----GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMAD 166
Query: 861 -TGRTVVCTIHQPSIDIFEAFDAGIPGVSKIRDGY 894
T +++Q S +I++ FD V + +G
Sbjct: 167 VLKTTTFVSLYQASDEIYDLFDK----VLVLYEGR 197
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 1e-29
Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 17/186 (9%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFT- 745
++ +S G + L+G G+GKTT + +L G R T +G I+GY +
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT----SGTAYINGYSIRTDRKAA 73
Query: 746 -RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL 804
+ GYC Q D +TV E L + A L+ + + VE ++ ++ L
Sbjct: 74 RQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKR 130
Query: 805 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRT 864
LS +++L++A+ L+ PS++ +DEPTSGLD + + + V GR+
Sbjct: 131 AR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI-LEVRKGRS 184
Query: 865 VVCTIH 870
++ T H
Sbjct: 185 IILTTH 190
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 4e-28
Identities = 68/189 (35%), Positives = 93/189 (49%), Gaps = 14/189 (7%)
Query: 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP--KNQ 741
K L+GVS PG+ L+G G+GKTTLM +LA G I I G K
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSS--GTIRIDGQDVLKQP 67
Query: 742 ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR 801
+ R GY Q P TV E L Y AWL+ + SK + V+EV+ELV L
Sbjct: 68 QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRA 124
Query: 802 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT 861
+ +G LS R+R+ IA LV +PSI+ +DEPT+GLD + R + + +
Sbjct: 125 KKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELGE 178
Query: 862 GRTVVCTIH 870
R V+ + H
Sbjct: 179 DRIVILSTH 187
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 3e-27
Identities = 119/502 (23%), Positives = 229/502 (45%), Gaps = 62/502 (12%)
Query: 3 ALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGV 62
ALAG++ + +G + N + + +RT +++Q DI +TVRETL F + +
Sbjct: 113 ALAGRIQGN-NFTGTILANNRKPTKQILKRTG-FVTQDDILYPHLTVRETLVFCSLLRLP 170
Query: 63 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVV 122
S L+++EK ++ + ++ L L C +T++
Sbjct: 171 KS-------LTKQEKI------------------------LVAESVISELGLTKCENTII 199
Query: 123 GDEMLRGISGGQRKRVTTG-EMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNG 181
G+ +RGISGG+RKRV+ EML+ P+ L +DE ++GLD++ + +V +LG
Sbjct: 200 GNSFIRGISGGERKRVSIAHEMLINPS-LLILDEPTSGLDATAAYRLVLTLGSLAQ-KGK 257
Query: 182 TALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQE 241
T + S+ QP+ VY +FD ++++S+G+ ++ G +F S+GF ADFL +
Sbjct: 258 TIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLD 317
Query: 242 VTSRKDQEQYWVRNDEPYRFVTVKE-FVHAFQSFHVGR-KLGDELGIPFDKKNSHPAALT 299
+ + Q ++P VK+ V ++ + + K E+ + +
Sbjct: 318 LANGVCQTDGVSEREKP----NVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSAS 373
Query: 300 TRKYGVGKKELLKACFSREHLLMKR-------NSFVYIFRLTQVMFLAVIGMTIFLRTKM 352
T+++ + + F++ +L++R SF R+ QV+ A++ ++
Sbjct: 374 TKEHRSSDRISISTWFNQFSILLQRSLKERKHESF-NTLRVFQVIAAALLAGLMW----W 428
Query: 353 HRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLP----VFYKQRDLRFYPSWAYAL 408
H D D G LFFI F G+ ++ P +F K+R Y +Y +
Sbjct: 429 HSDFR-DVQDRLGLLFFI---SIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFM 484
Query: 409 PAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGR 468
+ +P+ ++ ++++ +TY++ G G F L+LL +S + + A
Sbjct: 485 ARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIM 544
Query: 469 SMVVANTFGSLVLLLLFVLGGF 490
A+T ++ +L + GGF
Sbjct: 545 DAKKASTIVTVTMLAFVLTGGF 566
|
Length = 659 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 3e-27
Identities = 38/65 (58%), Positives = 45/65 (69%)
Query: 527 WKKILPNKTKPLGIEVLDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTS 586
W K + LG VL SRG FT+AYWYW+GVGAL GF ILF FTLAL++LNP G S
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKS 60
Query: 587 KAFIS 591
+A +S
Sbjct: 61 QAIVS 65
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 6e-26
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 23/202 (11%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQET---F 744
L+ +S + G ++G GSGK+TL+ +L G G +G + + G + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKEL 73
Query: 745 TRISGYCEQNDIHSP-----YVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP 799
R G QN P TV E + + E + R VEE +ELV L
Sbjct: 74 RRKVGLVFQN----PDDQFFGPTVEEEVAFGLENLGLPEEEIEER---VEEALELVGLEG 126
Query: 800 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV 859
LR LS Q++R+ IA L +P I+ +DEPT+GLD ++ ++
Sbjct: 127 LRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLK 181
Query: 860 DTGRTVVCTIHQPSIDIFEAFD 881
G+T++ H + E D
Sbjct: 182 AEGKTIIIVTHDLD-LLLELAD 202
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 2e-22
Identities = 61/256 (23%), Positives = 109/256 (42%), Gaps = 51/256 (19%)
Query: 3 ALAGKLDSSLKASGKVTYNGHDMHEFVPQ--RTAAYISQHDIHIGEMTVRETLAFSARCQ 60
LAG L + SG++ G+D+ + + R Y+ Q E+TVRE L F AR
Sbjct: 50 ILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLY 106
Query: 61 GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADT 120
G+ + + E +L++ L+ A+
Sbjct: 107 GLSKEEA------------------------EERIEE----------LLELFGLEDKANK 132
Query: 121 VVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILN 180
V R +SGG ++R++ L+ L +DE ++GLD + I L +
Sbjct: 133 KV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGG 187
Query: 181 GTALIS--LLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKC--PKRKGIA 236
T L+S +L+ E L D +I+++DG+I+ +G E +++ F G P+R +A
Sbjct: 188 VTILLSTHILE---EAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELA 244
Query: 237 DFLQEVTSRKDQEQYW 252
+ L+ + K +E+
Sbjct: 245 ELLEGLKLVKGEEELA 260
|
Length = 293 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 95.6 bits (239), Expect = 4e-22
Identities = 64/207 (30%), Positives = 96/207 (46%), Gaps = 20/207 (9%)
Query: 677 KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNIT 733
K G +K+ L GVS + G A++G +GSGK+TL+++L G R T G +
Sbjct: 8 KTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTD 67
Query: 734 ISGYPKNQETFTR---ISGYCEQNDIHS--PYVTVYESLLYSAWLRLSSEVNSKTREMFV 788
IS + + R I G+ Q+ + P +T E++ L L+ V K R
Sbjct: 68 ISKLSEKELAAFRRRHI-GFVFQS--FNLLPDLTALENVELP--LLLAG-VPKKERRERA 121
Query: 789 EEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 848
EE++E V L + LS Q++R+ IA L +P II DEPT LD+
Sbjct: 122 EELLERVGLGDRLNHYP-----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETG 176
Query: 849 AVVMRTVRNTV-DTGRTVVCTIHQPSI 874
VM +R + G T+V H P +
Sbjct: 177 KEVMELLRELNKEAGTTIVVVTHDPEL 203
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 94.5 bits (236), Expect = 9e-22
Identities = 56/200 (28%), Positives = 96/200 (48%), Gaps = 21/200 (10%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTR 746
L VS +PG A++G G+GK+TL+ + G + T G +I + G P +E R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSG----SIRVFGKPLEKER-KR 69
Query: 747 ISGYCEQN---DIHSPYVTVYESLLYSAW--LRLSSEVNSKTREMFVEEVMELVELNPLR 801
I GY Q D P ++V + +L + L ++ + V+E +E V L+ L
Sbjct: 70 I-GYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADKAK-VDEALERVGLSELA 126
Query: 802 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT 861
+G LS Q++R+ +A LV +P ++ +DEP +G+D + + +R
Sbjct: 127 DRQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRRE 181
Query: 862 GRTVVCTIHQPSIDIFEAFD 881
G T++ H + + E FD
Sbjct: 182 GMTILVVTHDLGL-VLEYFD 200
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 1e-21
Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 14/192 (7%)
Query: 687 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG---YPKNQET 743
+L+ +S + G +T ++G GSGK+TL+ LAG +G + + G + +
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAG--LLKPKSGEVLLDGKDIASLSPKE 73
Query: 744 FTRISGYCEQNDIHSPYVTVYESLLYS--AWLRLSSEVNSKTREMFVEEVMELVELNPLR 801
+ Y Q+ +TVYE +L L L + + E+ VEE +EL+ L L
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEI-VEEALELLGLEHLA 132
Query: 802 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN-TVD 860
V+ LS +R+R+ IA L I+ +DEPTS LD V+ +R+ +
Sbjct: 133 DR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE 187
Query: 861 TGRTVVCTIHQP 872
G TVV +H
Sbjct: 188 KGLTVVMVLHDL 199
|
Length = 258 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 2e-21
Identities = 53/206 (25%), Positives = 90/206 (43%), Gaps = 16/206 (7%)
Query: 680 GVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739
V +L +S + G +TAL+G G+GK+TL+ + G +G I I G P
Sbjct: 11 TVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPV 68
Query: 740 NQETFTRISGYCEQNDIHSPY--VTVYESLLYSAWLRLS--SEVNSKTREMFVEEVMELV 795
+ GY Q +TV + +L + + +N K +E V+E +E V
Sbjct: 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK-VDEALERV 127
Query: 796 ELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTV 855
+ LR +G LS Q++R+ +A L NP ++ +DEP +G+D + +
Sbjct: 128 GMEDLRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLL 182
Query: 856 RNTVDTGRTVVCTIHQPSIDIFEAFD 881
+ G+TV+ H D+
Sbjct: 183 KELRQEGKTVLMVTH----DLGLVMA 204
|
Length = 254 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 3e-21
Identities = 35/87 (40%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 127 LRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALIS 186
LRG+SGG+RKRV+ LV LF+DE ++GLDSS+ +++ L + T + S
Sbjct: 109 LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICS 167
Query: 187 LLQPAPEVYNLFDDIILVSDGQIVYQG 213
+ QP+ E++ LFD ++L+S G+++Y G
Sbjct: 168 IHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 91.3 bits (228), Expect = 5e-21
Identities = 43/186 (23%), Positives = 70/186 (37%), Gaps = 52/186 (27%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYP--KNQETF 744
L+ +S G + L+G G+GKTTL+ ++ G + G I + G K E
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG----EIKVLGKDIKKEPEEV 71
Query: 745 TRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL 804
R GY + +TV E+L S
Sbjct: 72 KRRIGYLPEEPSLYENLTVRENLKLSG--------------------------------- 98
Query: 805 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRT 864
G ++RL +A L+ +P ++ +DEPTSGLD + +R G+T
Sbjct: 99 -------G----MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKT 147
Query: 865 VVCTIH 870
++ + H
Sbjct: 148 ILLSSH 153
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 91.8 bits (229), Expect = 1e-20
Identities = 58/201 (28%), Positives = 94/201 (46%), Gaps = 20/201 (9%)
Query: 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKN 740
+ L+ +S PG AL+G +G GKTTL+ ++AG R G I ++G P
Sbjct: 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE 70
Query: 741 QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 800
+ I G Q+ P++TV E++ + L+L ++ R V E++ELV L L
Sbjct: 71 R---RNI-GMVFQDYALFPHLTVAENIAFG--LKLRGVPKAEIRAR-VRELLELVGLEGL 123
Query: 801 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNT-V 859
+ LS Q++R+ +A L PS++ +DEP S LDA+ + ++
Sbjct: 124 LNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQR 178
Query: 860 DTGRTVVCTIHQPSIDIFEAF 880
+ G T + H D EA
Sbjct: 179 ELGITTIYVTH----DQEEAL 195
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 2e-20
Identities = 55/186 (29%), Positives = 89/186 (47%), Gaps = 19/186 (10%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFT 745
+L+ +S G + AL G G+GKTTL +LAG +++ G +I ++G P +
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG----SILLNGKPIKAKERR 70
Query: 746 RISGYCEQN-DIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL 804
+ GY Q+ D +V E LL L+ N + E V++ ++L L++
Sbjct: 71 KSIGYVMQDVDYQLFTDSVREELLLG--LKELDAGNEQ-----AETVLKDLDLYALKERH 123
Query: 805 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRT 864
P LS Q++RL IA L++ ++ DEPTSGLD + V +R G+
Sbjct: 124 ---P--LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKA 178
Query: 865 VVCTIH 870
V+ H
Sbjct: 179 VIVITH 184
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 4e-20
Identities = 55/209 (26%), Positives = 95/209 (45%), Gaps = 23/209 (11%)
Query: 677 KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNIT 733
K G+ +K+ L V+ G A++G +GSGK+TL+++L G + T G +
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68
Query: 734 ISGYPKNQET-FTRIS-GYCEQNDIHS--PYVTVYESLLYSAWLRLSSEVNSKTREMFVE 789
++ + + R G+ QN + P +TV E++ + S K +
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELL 126
Query: 790 EVMELVEL---NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 846
EV+ L + + LS Q++R+ IA L+ NP II DEPT LD++
Sbjct: 127 EVLGLEDRLLKKKPSE----------LSGGQQQRVAIARALINNPKIILADEPTGNLDSK 176
Query: 847 AAAVVMRTVRNTV-DTGRTVVCTIHQPSI 874
A V+ +R + G+T++ H P +
Sbjct: 177 TAKEVLELLRELNKERGKTIIMVTHDPEL 205
|
Length = 226 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 1e-19
Identities = 49/196 (25%), Positives = 74/196 (37%), Gaps = 50/196 (25%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFT 745
LN VS G + AL+G +GSGK+TL+ +AG G I ++
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLR 75
Query: 746 RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALV 805
R G Q+ P++TV E++
Sbjct: 76 RRIGMVFQDFALFPHLTVLENIAL------------------------------------ 99
Query: 806 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRT 864
GLS Q++R+ +A L +P ++ +DEPTS LD V +++ G T
Sbjct: 100 ------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGIT 153
Query: 865 VVCTIHQPSIDIFEAF 880
VV H D+ EA
Sbjct: 154 VVLVTH----DLDEAA 165
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 87.9 bits (219), Expect = 3e-19
Identities = 57/199 (28%), Positives = 91/199 (45%), Gaps = 32/199 (16%)
Query: 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQ- 741
LV L+ VS + RPG + L+G G+GKTTL ++++G R T G + I+G P ++
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEI 72
Query: 742 ------ETFTRISGYCEQNDIHSPYVTVYESLL--------YSAWLRLSSEVNSKTREMF 787
TF + P +TV E+++ L + + RE
Sbjct: 73 ARLGIGRTFQIPRLF--------PELTVLENVMVAAQARTGSGLLLARARREEREARER- 123
Query: 788 VEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 847
EE++E V L L G LS Q++RL IA L +P ++ +DEP +GL+
Sbjct: 124 AEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEE 178
Query: 848 AAVVMRTVRNTVDTGRTVV 866
+ +R + G TV+
Sbjct: 179 TEELAELIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 5e-19
Identities = 50/195 (25%), Positives = 80/195 (41%), Gaps = 16/195 (8%)
Query: 682 HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741
+ + L VS G L+G GSGK+TL+ +L G +G + + G +
Sbjct: 13 YPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVLVDGLDTSS 70
Query: 742 ETFT----RISGYCEQN-DIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE 796
E + G QN D TV + + + L V E +ELV
Sbjct: 71 EKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGL-ENLGLPREEIEER--VAEALELVG 127
Query: 797 LNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVR 856
L L LS Q++R+ IA L P I+ +DEPT+GLD + ++ ++
Sbjct: 128 LEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLK 182
Query: 857 NTV-DTGRTVVCTIH 870
+ G+T++ H
Sbjct: 183 KLKEEGGKTIIIVTH 197
|
Length = 235 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 7e-19
Identities = 55/196 (28%), Positives = 84/196 (42%), Gaps = 26/196 (13%)
Query: 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYP--K 739
++GV+ R G + +G G+GKTT + +L R T +G ++GY +
Sbjct: 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT----SGTARVAGYDVVR 59
Query: 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAW--LRLSSE---VNSKTREMFVEEVMEL 794
R G Q Y +V E L + L + + E EE++EL
Sbjct: 60 EPRKVRRSIGIVPQ------YASVDEDL--TGRENLEMMGRLYGLPKDEAEERAEELLEL 111
Query: 795 VELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRT 854
EL VG S R+RL IA L+ P ++F+DEPT+GLD R +
Sbjct: 112 FELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDY 166
Query: 855 VRNTVDTGRTVVCTIH 870
+R + G T++ T H
Sbjct: 167 IRALKEEGVTILLTTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 2e-18
Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 12/196 (6%)
Query: 677 KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG 736
KR + ++GVS +PG +T L+G G+GKTT + +LAG G T+ G
Sbjct: 9 KRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD--AGFATVDG 66
Query: 737 YPKNQETF--TRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMEL 794
+ +E R G+ + +T E+L Y A L R +EE+ +
Sbjct: 67 FDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTAR---LEELADR 123
Query: 795 VELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRT 854
+ + L VG G ST R+++ IA LV +P ++ +DEPT+GLD A +
Sbjct: 124 LGMEELLDRRVG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREF 178
Query: 855 VRNTVDTGRTVVCTIH 870
+R G+ ++ + H
Sbjct: 179 IRQLRALGKCILFSTH 194
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 4e-18
Identities = 52/188 (27%), Positives = 83/188 (44%), Gaps = 16/188 (8%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTR 746
L G++ A G + AL+G G+GK+TL+ L G R G + + Y + R
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERR 67
Query: 747 IS-GYCEQN-DIHSPYVTVYESLLYSAW-LRLS-SEVNSKTREMFVEEVMELVELNPLRQ 802
G Q+ D V + + + L LS +EV + V E + V + LR+
Sbjct: 68 QRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERR-----VREALTAVGASGLRE 122
Query: 803 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTG 862
LS ++KR+ IA + P ++ +DEPT+GLD ++ +R G
Sbjct: 123 RPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEG 177
Query: 863 RTVVCTIH 870
TVV + H
Sbjct: 178 MTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 4e-18
Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 17/185 (9%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTR 746
L+ +S + G + +G G+GKTT M ++ G + G IT Y KN E R
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNIEALRR 73
Query: 747 ISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVG 806
I E + P +T E+L A L + ++EV+++V L + V
Sbjct: 74 IGALIEAPGFY-PNLTARENLRLLARLLGIRKKR-------IDEVLDVVGLKDSAKKKVK 125
Query: 807 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVV 866
G S ++RL IA+ L+ NP ++ +DEPT+GLD + + + D G TV+
Sbjct: 126 -----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVL 180
Query: 867 CTIHQ 871
+ H
Sbjct: 181 ISSHL 185
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 82.5 bits (205), Expect = 6e-18
Identities = 45/190 (23%), Positives = 73/190 (38%), Gaps = 42/190 (22%)
Query: 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQET 743
+L+ +S + G + ++G G+GK+TL+ LAG +G I + G
Sbjct: 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAG--LLKPSSGEILLDGKD----- 62
Query: 744 FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQA 803
SL R + +V + +EL+ L L
Sbjct: 63 --------------------LASLSPKELARKIA---------YVPQALELLGLAHLADR 93
Query: 804 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TG 862
N LS +R+R+ +A L P I+ +DEPTS LD ++ +R G
Sbjct: 94 -----PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERG 148
Query: 863 RTVVCTIHQP 872
+TVV +H
Sbjct: 149 KTVVMVLHDL 158
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 6e-18
Identities = 50/203 (24%), Positives = 94/203 (46%), Gaps = 27/203 (13%)
Query: 682 HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK-- 739
+ D L+ ++ + G LTAL+G +G+GK+TL+++L G G I ++G
Sbjct: 330 YPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRD 387
Query: 740 -NQETFTRISGYCEQNDIHSPYV---TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELV 795
+ E + + + QN PY+ T+ E++L + + E + ++
Sbjct: 388 LSPEAWRKQISWVSQN----PYLFAGTIRENILLAR--------PDASDEE-IIAALDQA 434
Query: 796 ELNPLRQALVGLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAV 850
L GL V GLS Q +RL +A L++ S++ +DEPT+ LDA +
Sbjct: 435 GLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQI 494
Query: 851 VMRTVRNTVDTGRTVVCTIHQPS 873
+++ ++ +TV+ H+
Sbjct: 495 ILQALQELAK-QKTVLVITHRLE 516
|
Length = 559 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 2e-17
Identities = 53/209 (25%), Positives = 87/209 (41%), Gaps = 17/209 (8%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRK--TRGYITGN-ITISGYPKNQETFT 745
L+G++ + G L+G +G+GK+TL+ ++ + T G I N +S +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76
Query: 746 RIS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL 804
R G Q+ P VYE++ ++ EV + V +EL L
Sbjct: 77 RRKIGVVFQDFRLLPDRNVYENVAFAL------EVTGVPPREIRKRVPAALELVGLSHKH 130
Query: 805 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRT 864
LP LS +++R+ IA +V +P+I+ DEPT LD +M ++ G T
Sbjct: 131 RALP--AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188
Query: 865 VVCTIHQPSIDIFEAFDAGIPGVSKIRDG 893
VV H + D V + G
Sbjct: 189 VVVATHAKEL-----VDTTRHRVIALERG 212
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 3e-17
Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 26/177 (14%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG-----RKTRGYITGNITISGYPKNQET 743
L +S G +TAL+G +G GK+TL+ +L G + + G
Sbjct: 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP--DEGEVLLDGKDIYDLD 73
Query: 744 FTRIS-----GYCEQNDIHSPYV---TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELV 795
+ G Q P ++Y+++ Y L + + VEE +
Sbjct: 74 VDVLELRRRVGMVFQ----KPNPFPGSIYDNVAYGLRLHGIK--LKEELDERVEEALRKA 127
Query: 796 ELNP-LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 851
L ++ L L GLS Q++RL +A L P ++ +DEPTS LD + A +
Sbjct: 128 ALWDEVKDRLHAL----GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKI 180
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 5e-17
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEF--VPQRTAAYISQHDIHIGEMTVRETLAFSAR 58
+ ALA + + ++ G + YNG EF Y+S+ D+H +TVRETL F+ R
Sbjct: 50 LKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALR 109
Query: 59 CQG 61
C+G
Sbjct: 110 CKG 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 6e-17
Identities = 62/206 (30%), Positives = 90/206 (43%), Gaps = 34/206 (16%)
Query: 682 HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG-RKTRGYITGNITISGYP-- 738
+ +L+GVS PG A++G +GSGK+TL+ LAG G +T+ G P
Sbjct: 344 YPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQ---GEVTLDGVPVS 400
Query: 739 -KNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL 797
+Q+ R C Q D H TV E+L + + EE+ +E
Sbjct: 401 SLDQDEVRRRVSVCAQ-DAHLFDTTVRENLRLAR-----PDATD-------EELWAALER 447
Query: 798 NPLRQALVGLPGVNGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDAR 846
L L LP GL T +R+RL +A L+A+ I+ +DEPT LDA
Sbjct: 448 VGLADWLRALPD--GLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAE 505
Query: 847 AAAVVMRTVRNTVDTGRTVVCTIHQP 872
A ++ + +GRTVV H
Sbjct: 506 TADELLEDLLA-ALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 7e-17
Identities = 52/206 (25%), Positives = 83/206 (40%), Gaps = 43/206 (20%)
Query: 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQ- 741
L +N VS RPG + L+G G+GKTTL +++ G + + G + I+G P ++
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76
Query: 742 ------ETFTRISGYCEQNDIHSPYVTVYESLL--------------YSAWLRLSSEVNS 781
TF Q P +TV E++ + E
Sbjct: 77 ARLGIARTF--------QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARE 128
Query: 782 KTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 841
+ E++E V L L G LS Q++RL IA L P ++ +DEP +
Sbjct: 129 R-----ARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAA 178
Query: 842 GLDARAAAVVMRTVRNTVDT-GRTVV 866
GL+ + +R D G T++
Sbjct: 179 GLNPEETEELAELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 1e-16
Identities = 60/223 (26%), Positives = 88/223 (39%), Gaps = 44/223 (19%)
Query: 687 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETF 744
VL +G+S G L G GSGKTTL+ ++AG G TI + +
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAG------TIKLDGGDID-- 67
Query: 745 TRISGYCEQNDIH--------SPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE 796
E H P +TV E+L + W E+ + +E V
Sbjct: 68 --DPDVAEA--CHYLGHRNAMKPALTVAENLEF--WAAFLG-----GEELDIAAALEAVG 116
Query: 797 LNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVR 856
L L LP LS Q++R+ +A LV+N I +DEPT+ LDA A A+ +R
Sbjct: 117 L----APLAHLPF-GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIR 171
Query: 857 NTVDTGRTVVCTIHQPSIDIFEAFDAGIPGVSKIR-DGYNPAT 898
+ G V+ H P G+PG ++ +
Sbjct: 172 AHLAQGGIVIAATHIP---------LGLPGARELDLGPFAAED 205
|
Length = 207 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 1e-16
Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 17/187 (9%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFT- 745
+ GVS R G + L+G G+GKTT + +L + T +G T++G+ +E
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT----SGRATVAGHDVVREPREV 71
Query: 746 -RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL 804
R G Q+ +T +E+L A RL ++ RE ++E+++ V L L
Sbjct: 72 RRRIGIVFQDLSVDDELTGWENLYIHA--RLYGVPGAERRER-IDELLDFVGLLEAADRL 128
Query: 805 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GR 863
V S R+RL IA LV P ++F+DEPT GLD + A V + + G
Sbjct: 129 VK-----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM 183
Query: 864 TVVCTIH 870
T++ T H
Sbjct: 184 TILLTTH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 2e-16
Identities = 62/246 (25%), Positives = 102/246 (41%), Gaps = 47/246 (19%)
Query: 645 DQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTAL 704
+ + LP + F+ +++ DD VL +S PG A+
Sbjct: 456 QEGDKTLIHLPKLQGEIEFENVSFRYG----------PDDPPVL-EDLSLEIPPGEKVAI 504
Query: 705 MGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETFTRISGYCEQNDIHSPYV 761
+G +GSGK+TL+ +L G G I + G N + R GY Q+
Sbjct: 505 VGRSGSGKSTLLKLLLGLYKP--QQGRILLDGVDLNDIDLASLRRQVGYVLQDP------ 556
Query: 762 TVYESLLYSAWLR----LSSEVNSKTREMFVEEVMELVELNPLRQALVGLP--------- 808
L+S +R L + + EE++E +L + + LP
Sbjct: 557 -----FLFSGSIRENIALGNPEATD------EEIIEAAQLAGAHEFIENLPMGYDTPVGE 605
Query: 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCT 868
G LS QR+RL +A L++ P I+ +DE TS LD A++++ + + GRTV+
Sbjct: 606 GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL-QILQGRTVIII 664
Query: 869 IHQPSI 874
H+ S
Sbjct: 665 AHRLST 670
|
Length = 709 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 3e-16
Identities = 57/206 (27%), Positives = 90/206 (43%), Gaps = 26/206 (12%)
Query: 679 RGVH---DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRG--YITGN 731
RG+ + VL GV R G + A++G +GSGK+TL+ ++ G R G I G
Sbjct: 4 RGLTKSFGGRTVL-KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGE 62
Query: 732 ITISGYPKNQETFTRISGYCEQ-----NDIHSPYVTVYESLLYSAWLRLSSEVNSKTREM 786
R G Q + + TV+E++ + LR + ++ +
Sbjct: 63 DISGLSEAELYRLRRRMGMLFQSGALFDSL-----TVFENVAF--PLREHTRLSEEEIRE 115
Query: 787 FVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 846
V E +E V L R A P LS +KR+ +A L +P ++ DEPT+GLD
Sbjct: 116 IVLEKLEAVGL---RGAEDLYPA--ELSGGMKKRVALARALALDPELLLYDEPTAGLDPI 170
Query: 847 AAAVVMRTVRNTVDT-GRTVVCTIHQ 871
A+ V+ +R+ G T + H
Sbjct: 171 ASGVIDDLIRSLKKELGLTSIMVTHD 196
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 6e-16
Identities = 52/198 (26%), Positives = 93/198 (46%), Gaps = 28/198 (14%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFT 745
L VS PG AL+G +G+GK+TL+++L G T G I + ++ + +++
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADA--DADSWR 395
Query: 746 RISGYCEQNDIHSPYV---TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQ 802
+ Q+ P++ T+ E++ + + + E +E L+
Sbjct: 396 DQIAWVPQH----PFLFAGTIAENIRLAR--------PDASDAE-IREALERAGLDEFVA 442
Query: 803 AL-VGL-----PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVR 856
AL GL G GLS Q +RL +A + + ++ +DEPT+ LDA A V+ +R
Sbjct: 443 ALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALR 502
Query: 857 NTVDTGRTVVCTIHQPSI 874
+ GRTV+ H+ ++
Sbjct: 503 A-LAQGRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 6e-16
Identities = 54/227 (23%), Positives = 98/227 (43%), Gaps = 39/227 (17%)
Query: 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVL 719
+ F +++S + ++ L+ VS R G A++G GSGK+TL+ +L
Sbjct: 2 RIEFRNVSFSYP-----------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLL 50
Query: 720 AG--RKTRGYI-TGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS 776
AG + T G + I + I GY Q D+ Y T+ +++ A L+
Sbjct: 51 AGLYKPTSGSVLLDGTDIRQLDP-ADLRRNI-GYVPQ-DVTLFYGTLRDNITLGA--PLA 105
Query: 777 SEVNSKTREMFVEEVMELVELNPLRQALVGLP---------GVNGLSTEQRKRLTIAVEL 827
+ E ++ EL + + P GLS QR+ + +A L
Sbjct: 106 DD----------ERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARAL 155
Query: 828 VANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSI 874
+ +P I+ +DEPTS +D + + +R + +T++ H+PS+
Sbjct: 156 LNDPPILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPSL 201
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 8e-16
Identities = 65/205 (31%), Positives = 106/205 (51%), Gaps = 20/205 (9%)
Query: 670 VDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT 729
+D KR G DKLV+ +G+S + G L+G G+GKTT + +L G
Sbjct: 8 IDFRNVEKRYG---DKLVV-DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD--A 61
Query: 730 GNITISGYP---KNQETFTRISGYCEQNDIHSPYVTVYESLL-YSAWLRLSSEVNSKTRE 785
G+I++ G P + + R+ G Q D P TV E+LL + + LS+ + R
Sbjct: 62 GSISLCGEPVPSRARHARQRV-GVVPQFDNLDPDFTVRENLLVFGRYFGLSA---AAARA 117
Query: 786 MFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 845
+ V ++E +L A VG LS ++RLT+A LV +P ++ +DEPT+GLD
Sbjct: 118 L-VPPLLEFAKLENKADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDP 171
Query: 846 RAAAVVMRTVRNTVDTGRTVVCTIH 870
+A ++ +R+ + G+T++ T H
Sbjct: 172 QARHLMWERLRSLLARGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 76.3 bits (189), Expect = 8e-16
Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 52/189 (27%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETF 744
+L VS +PG A++G +GSGK+TL+ +L T G I + + + E+
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDL--DLESL 74
Query: 745 TRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL 804
+ Y Q + L+S T + E
Sbjct: 75 RKNIAYVPQ-----------DPFLFSG-----------T-------IRE----------- 94
Query: 805 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRT 864
N LS QR+R+ IA L+ +P I+ +DE TS LD A+++ +R + G+T
Sbjct: 95 ------NILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA-LAKGKT 147
Query: 865 VVCTIHQPS 873
V+ H+ S
Sbjct: 148 VIVIAHRLS 156
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 1e-15
Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 14/182 (7%)
Query: 692 VSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGN-ITISGYPKNQETFTRIS 748
VS G +T L+G G+GKTTL+ ++A G +T + + P +I
Sbjct: 21 VSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP--SFVRRKIG 78
Query: 749 GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLP 808
+ +++ +T E+L Y A L + ++ K + + E+ + ++L VG
Sbjct: 79 VLFGERGLYA-RLTARENLKYFARL---NGLSRKEIKARIAELSKRLQLLEYLDRRVG-- 132
Query: 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCT 868
ST ++++ IA LV +PSI+ +DEPTSGLD R ++ + GR V+ +
Sbjct: 133 ---EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFS 189
Query: 869 IH 870
H
Sbjct: 190 SH 191
|
Length = 245 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 2e-15
Identities = 57/201 (28%), Positives = 90/201 (44%), Gaps = 25/201 (12%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT-GNITISGYPKNQETFTRI 747
L VS + PG AL+G +G+GK+TL+ L G T G++ I G N+ +
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE---PTSGSVLIDGTDINKLKGKAL 73
Query: 748 ------SGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR 801
G Q ++V E++L R S+ S +F +E E
Sbjct: 74 RQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRST-WRS-LFGLFPKE-----EKQRAL 126
Query: 802 QAL--VGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRT 854
AL VGL + LS Q++R+ IA L+ P +I DEP + LD ++ VM
Sbjct: 127 AALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDL 186
Query: 855 VRN-TVDTGRTVVCTIHQPSI 874
++ + G TV+ ++HQ +
Sbjct: 187 LKRINREEGITVIVSLHQVDL 207
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 2e-15
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQP 872
LS QR+R+ +A L+ NP ++ +DEPTSGLD + ++ +R + GRTV+ H P
Sbjct: 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140
Query: 873 SIDIFEAFD 881
A D
Sbjct: 141 E-LAELAAD 148
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 4e-15
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 15/153 (9%)
Query: 698 PGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITI---SGYPKNQETFTRISGYCE 752
+T + G +G+GK+TL+ +AG + G I N T+ S N R G
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 753 QNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNG 812
Q P++ V E+L + + + E + V+E+++L+ L+ L
Sbjct: 82 QQYALFPHLNVRENLAFGLKRKRNRE-----DRISVDELLDLLGLDHLLNR-----YPAQ 131
Query: 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 845
LS +++R+ +A L A P ++ +DEP S LD
Sbjct: 132 LSGGEKQRVALARALAAQPELLLLDEPFSALDR 164
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 4e-15
Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 19/201 (9%)
Query: 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKN 740
++ +S + G L+G +G GKTTL+ ++AG + + G I I+ P
Sbjct: 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE 75
Query: 741 QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 800
+ R G Q+ P++TV E++ + L++ ++ + VEE +ELV L
Sbjct: 76 K----RPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEGF 129
Query: 801 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN-TV 859
+ LS Q++R+ +A LV P ++ +DEP S LDA+ + + ++
Sbjct: 130 ADRK-----PHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQR 184
Query: 860 DTGRTVVCTIHQPSIDIFEAF 880
+ G T V H D EA
Sbjct: 185 ELGITFVYVTH----DQEEAL 201
|
Length = 352 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 5e-15
Identities = 55/205 (26%), Positives = 86/205 (41%), Gaps = 21/205 (10%)
Query: 675 EMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GN 731
+ R ++++GV PG LT L+G GSGK+TL+ +LAG R G +
Sbjct: 3 RLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAG 62
Query: 732 ITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLY------SAWLRLSSEVNSKTRE 785
+ + G + R EQ+ + +TV + + S W S +
Sbjct: 63 VDLHGLSRRAR--ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDR 120
Query: 786 MFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 845
EL L ++ LS +R+R+ +A L P ++ +DEPT+ LD
Sbjct: 121 ALAR--TELSHL--------ADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDV 170
Query: 846 RAAAVVMRTVRNTVDTGRTVVCTIH 870
RA + VR TG TVV +H
Sbjct: 171 RAQLETLALVRELAATGVTVVAALH 195
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 8e-15
Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 15/172 (8%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT---GNITISGYPKNQET 743
++ VS R G L+G +GSGK+TL +LAG + G I ++ ++G +
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 744 FTRISGYCEQNDIHS--PYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR 801
+ Q+ S P +TV + L LR+ + R V E++ELV L P
Sbjct: 367 RRIQMVF--QDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPP-- 420
Query: 802 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMR 853
+ L P + LS QR+R+ IA L P ++ +DEP S LD A V+
Sbjct: 421 EFLDRYP--HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN 470
|
Length = 539 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 1e-14
Identities = 54/195 (27%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 687 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRG--YITGNITISGYPKNQE 742
V+L+ ++ G + A++G +GSGK+TL++++ + G Y+ G T K
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71
Query: 743 TFTRIS-GYCEQNDIHSPYVTVYESLLYSAWLRLS-SEVNSKTREMFVEEVMELVELN-P 799
F R GY QN TV E+L L L +++ K + +E +E V LN
Sbjct: 72 KFRREKLGYLFQNFALIENETVEENLD----LGLKYKKLSKKEKREKKKEALEKVGLNLK 127
Query: 800 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV 859
L+Q + LS +++R+ +A ++ P +I DEPT LD + V+ +
Sbjct: 128 LKQK------IYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELN 181
Query: 860 DTGRTVVCTIHQPSI 874
D G+T++ H P +
Sbjct: 182 DEGKTIIIVTHDPEV 196
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 1e-14
Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 19/188 (10%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT--GNITISGYPKNQE---T 743
L+ VS RPG AL+G G+GK+TL +L TR Y+ G I+++G+ +
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLL----TRLYVAQEGQISVAGHDLRRAPRAA 72
Query: 744 FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQA 803
R+ +Q + ++V ++L Y A L S ++ R + E++ + L
Sbjct: 73 LARLGVVFQQPTL-DLDLSVRQNLRYHAALHGLSRAEARAR---IAELLARLGLAERADD 128
Query: 804 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN-TVDTG 862
V L+ R+R+ IA L+ P+++ +DEPT GLD + A + VR D G
Sbjct: 129 KVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQG 183
Query: 863 RTVVCTIH 870
+V+ H
Sbjct: 184 LSVLWATH 191
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 1e-14
Identities = 61/193 (31%), Positives = 99/193 (51%), Gaps = 21/193 (10%)
Query: 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP---KN 740
DK V+ NG+S G L+G G+GK+T+ ++ G + G IT+ G P +
Sbjct: 53 DKAVV-NGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARA 109
Query: 741 QETFTRISGYCEQNDIHSPYVTVYESLL-YSAWLRLSSEVNSKTREMFVEEVM-ELVELN 798
+ RI G Q D TV E+LL + + +S TRE +E V+ L+E
Sbjct: 110 RLARARI-GVVPQFDNLDLEFTVRENLLVFGRYFGMS------TRE--IEAVIPSLLEFA 160
Query: 799 PL-RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN 857
L +A V+ LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+
Sbjct: 161 RLESKADAR---VSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRS 217
Query: 858 TVDTGRTVVCTIH 870
+ G+T++ T H
Sbjct: 218 LLARGKTILLTTH 230
|
Length = 340 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 1e-14
Identities = 59/198 (29%), Positives = 93/198 (46%), Gaps = 14/198 (7%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTR 746
L+ +S + G L AL+G +G+GK+TL+ ++AG G I N + N R
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77
Query: 747 ISGYCEQNDIHSPYVTVYESLLYSAWLRLS--SEVNSKTREMFVEEVMELVELNPLRQAL 804
G+ Q+ P++TV +++ + +R SE + R VEE++ LV+L L
Sbjct: 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRAR---VEELLRLVQLEGLADRY 134
Query: 805 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGR 863
P LS QR+R+ +A L P ++ +DEP LDA+ + R +R D G
Sbjct: 135 ---P--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGV 189
Query: 864 TVVCTIHQPSIDIFEAFD 881
T V H + E D
Sbjct: 190 TTVFVTHDQE-EALELAD 206
|
Length = 345 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 1e-14
Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 15/200 (7%)
Query: 675 EMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNI 732
E + + L + +S G + G G+GKTTL+ +LAG R G +
Sbjct: 4 EAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV--YW 61
Query: 733 TISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVM 792
+E++ + Y +T E+L + W R N+ T + E +
Sbjct: 62 QGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHF--WQRFHGSGNAAT----IWEAL 115
Query: 793 ELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVM 852
V L L LP V LS Q++R+ +A ++ + +DEP + LD A++
Sbjct: 116 AQVGLAGLED----LP-VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLT 170
Query: 853 RTVRNTVDTGRTVVCTIHQP 872
+ G V+ T HQP
Sbjct: 171 ALMAAHAAQGGIVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 19/195 (9%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT---GNITISGYPKNQET 743
L ++ PG A++G +G+GK+TL+ + + G I +IT K ++
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77
Query: 744 FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKT-REMFVEEVMELVELNPLRQ 802
RI G Q+ +TV E++L+ RL + ++ F EE E L+ L +
Sbjct: 78 RRRI-GMIFQHYNLIERLTVLENVLHG---RLGYKPTWRSLLGRFSEEDKERA-LSALER 132
Query: 803 ALVGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN 857
VGL + LS Q++R+ IA L P +I DEP + LD + + VM ++
Sbjct: 133 --VGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKR 190
Query: 858 -TVDTGRTVVCTIHQ 871
+ G TV+ +HQ
Sbjct: 191 INKEDGITVIINLHQ 205
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 3e-14
Identities = 56/203 (27%), Positives = 88/203 (43%), Gaps = 19/203 (9%)
Query: 681 VHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNIT-ISGY 737
+ L V+ G + A++G +G+GK+TL+ L G T G I N I+
Sbjct: 12 TYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKL 71
Query: 738 PKNQETFTRIS-GYCEQNDIHSPYVTVYESLL------YSAWLRLSSEVNSKTREMFVEE 790
+ R G Q P ++V E++L S W L + + + ++
Sbjct: 72 KGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDA 131
Query: 791 VMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAV 850
L + L +A + LS Q++R+ IA LV P II DEP + LD +A
Sbjct: 132 ---LERVGILDKAYQR---ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKK 185
Query: 851 VMRTVR--NTVDTGRTVVCTIHQ 871
VM ++ N D G TV+ +HQ
Sbjct: 186 VMDILKDINQED-GITVIVNLHQ 207
|
Length = 258 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 4e-14
Identities = 63/212 (29%), Positives = 95/212 (44%), Gaps = 31/212 (14%)
Query: 677 KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITI 734
K G + L +S + G AL+G +G GK+TL+ ++AG R T G + +
Sbjct: 8 KTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG----EVLV 63
Query: 735 SGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMEL 794
G P R GY Q D P++TV +++ L L ++ RE EL
Sbjct: 64 DGEPVTGPGPDR--GYVFQQDALLPWLTVLDNVALG--LELQGVPKAEARE----RAEEL 115
Query: 795 VELNPLRQALVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 849
+EL VGL G LS R+R+ +A L +P ++ +DEP S LDA
Sbjct: 116 LEL-------VGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTRE 168
Query: 850 VVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAF 880
+ + + +TG+TV+ H DI EA
Sbjct: 169 QLQEELLDIWRETGKTVLLVTH----DIDEAV 196
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 5e-14
Identities = 56/208 (26%), Positives = 84/208 (40%), Gaps = 31/208 (14%)
Query: 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY-IT-GNITISGYPKN 740
+ K +L GV+ + G + A+MG GSGK+TL + G Y +T G I G
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP--KYEVTEGEILFDG---- 67
Query: 741 QETFTRISGYCE----------QNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEE 790
E +S E Q + P VT + L + R + ++E
Sbjct: 68 -EDILELSPD-ERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKE 125
Query: 791 VMELVELNPL---RQALVGLPGVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 846
EL+ L+ R VN G S ++KR I L+ P + +DEP SGLD
Sbjct: 126 KAELLGLDEEFLER-------YVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDID 178
Query: 847 AAAVVMRTVRNTVDTGRTVVCTIHQPSI 874
A +V + + GR V+ H +
Sbjct: 179 ALKIVAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 5e-14
Identities = 53/174 (30%), Positives = 79/174 (45%), Gaps = 24/174 (13%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKN----QE 742
L V+ G L+G +G GK+TL+ ++AG T G I I G ++
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL----IDGRDVTDLPPEK 74
Query: 743 TFTRISGYCEQNDIHSPYVTVYESLLYSAWLR-LSSEVNSKTREMFVEEVMELVELNPLR 801
R QN P++TVYE++ + LR + K V+EV +L+ L L
Sbjct: 75 ---RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKR----VKEVAKLLGLEHLL 127
Query: 802 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTV 855
LS QR+R+ +A LV P + +DEP S LDA+ V+MR+
Sbjct: 128 NRKP-----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK-LRVLMRSE 175
|
Length = 338 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 6e-14
Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 15/189 (7%)
Query: 677 KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT--GNI 732
+ L+ VS + + G L+G +GSGK+TL + G + T G I G
Sbjct: 9 VSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKD 68
Query: 733 TISGYPKNQETFTRISGYCEQNDIHS--PYVTVYESLLYSAWLRLSSEVNSKTREMFVEE 790
+ + ++ + Q+ + S P +T+ E + + + R+ V
Sbjct: 69 LLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIH-GKLSKKEARKEAVLL 127
Query: 791 VMELVELNP--LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 848
++ V L L + P + LS QR+R+ IA L NP ++ DEPTS LD
Sbjct: 128 LLVGVGLPEEVLNR----YP--HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQ 181
Query: 849 AVVMRTVRN 857
A ++ ++
Sbjct: 182 AQILDLLKK 190
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 8e-14
Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 34/205 (16%)
Query: 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI--TGNITISGYP--- 738
D V+L+ +S +PG + ++G +GSGK+TL ++ R Y+ G + + G+
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLI----QRFYVPENGRVLVDGHDLAL 68
Query: 739 KNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVME----- 793
+ R G Q E++L++ +R + M +E V+E
Sbjct: 69 ADPAWLRRQVGVVLQ-----------ENVLFNRSIR--DNIALADPGMSMERVIEAAKLA 115
Query: 794 -----LVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 848
+ EL +VG G GLS QR+R+ IA L+ NP I+ DE TS LD +
Sbjct: 116 GAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESE 174
Query: 849 AVVMRTVRNTVDTGRTVVCTIHQPS 873
+MR + + GRTV+ H+ S
Sbjct: 175 HAIMRNMHDICA-GRTVIIIAHRLS 198
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-13
Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 21/166 (12%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYP----KNQ 741
LN VS G ++G +GSGK+TL +LAG + + +G+I + G P K
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILLDGKPLAPKKRA 77
Query: 742 ETFTRISGYCEQNDIHS--PYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP 799
+ F R Q+ S P TV L + + E+++ V L P
Sbjct: 78 KAFYRPVQMVFQDPYSSLNPRRTVGRIL-SEPLRPHGL----SKSQQRIAELLDQVGLPP 132
Query: 800 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 845
L P + LS QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 133 --SFLDRRP--HELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-13
Identities = 61/207 (29%), Positives = 96/207 (46%), Gaps = 29/207 (14%)
Query: 677 KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYI---TGN 731
K G V+L+GV G + A++G +GSGK+TL+ ++ G R +G I +
Sbjct: 16 KSFGDR----VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGED 71
Query: 732 ITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEV 791
I + E R+ G Q +TV+E++ + LR + ++ +
Sbjct: 72 IPQLSEEELYEIRKRM-GVLFQQGALFSSLTVFENVAFP--LR-------EHTKLPESLI 121
Query: 792 MELVELNPLRQALVGLPGVNG------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 845
ELV + LVGL G LS RKR+ +A + +P ++F+DEPTSGLD
Sbjct: 122 RELVLMK---LELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDP 178
Query: 846 RAAAVVMRTVRNTVDT-GRTVVCTIHQ 871
+A V+ +R D G TV+ H
Sbjct: 179 ISAGVIDELIRELNDALGLTVIMVTHD 205
|
Length = 263 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 1e-13
Identities = 49/190 (25%), Positives = 72/190 (37%), Gaps = 51/190 (26%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETF 744
+L VS + PG A++G +GSGK+TL ++ G R T G + IS + N+
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNE--L 74
Query: 745 TRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL 804
GY Q+D E+F + E
Sbjct: 75 GDHVGYLPQDD-----------------------------ELFSGSIAE----------- 94
Query: 805 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRT 864
N LS QR+RL +A L NP I+ +DEP S LD + + + G T
Sbjct: 95 ------NILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGAT 148
Query: 865 VVCTIHQPSI 874
+ H+P
Sbjct: 149 RIVIAHRPET 158
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 53/193 (27%), Positives = 82/193 (42%), Gaps = 19/193 (9%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETF 744
LL+GVS RPG + A++G G+GK+TL+ L+G +G +T++G P N E
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGE--LSPDSGEVTLNGVPLNSWPPEEL 73
Query: 745 TRISGYCEQNDIHSPYVTVYESLLYSAW-LRLSSEVNSKTREMFVEEVMELVELNPLRQA 803
R QN + TV E + R E R + + +L+ L
Sbjct: 74 ARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDER--IAAQALAATDLSGLAGR 131
Query: 804 LVGLPGVNGLSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAVVMRTVRN 857
LS +++R+ +A L V + +F+DEPTS LD +R R
Sbjct: 132 DY-----RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQ 186
Query: 858 TVDTGRTVVCTIH 870
G V+ +H
Sbjct: 187 LAREGGAVLAVLH 199
|
Length = 259 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 2e-13
Identities = 46/191 (24%), Positives = 78/191 (40%), Gaps = 16/191 (8%)
Query: 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQ 741
+ +L G+S G + G G GKTTL+ +LAG R G + N T + +
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL--AEQR 68
Query: 742 ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR 801
+ R Y P ++ E+L + W + + +E+ + V L
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHF--WAAIHG-----GAQRTIEDALAAVGLTGFE 121
Query: 802 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT 861
LS Q++RL +A ++ + +DEPT+ LD A++ +R +
Sbjct: 122 DLPA-----AQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR 176
Query: 862 GRTVVCTIHQP 872
G V+ T HQ
Sbjct: 177 GGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 2e-13
Identities = 53/206 (25%), Positives = 91/206 (44%), Gaps = 21/206 (10%)
Query: 677 KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITI 734
+ + +L ++ + G A++G +G GK+TL+ ++AG + T G + +
Sbjct: 7 EGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSG----EVLL 62
Query: 735 SGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMEL 794
G P GY Q D P++TV +++ L L + ++ RE +E++EL
Sbjct: 63 DGRPVTGPGPDI--GYVFQEDALLPWLTVLDNVALG--LELRGKSKAEARER-AKELLEL 117
Query: 795 VELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRT 854
V L P LS R+R+ IA L P ++ +DEP LDA +
Sbjct: 118 VGLAGFEDKY---PHQ--LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDE 172
Query: 855 VRNTV-DTGRTVVCTIHQPSIDIFEA 879
+ +T +TV+ H D+ EA
Sbjct: 173 LLRLWEETRKTVLLVTH----DVDEA 194
|
Length = 248 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 54/195 (27%), Positives = 97/195 (49%), Gaps = 26/195 (13%)
Query: 687 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP----KNQE 742
V+L+ VS G +T+++G G+GK+TL+ +++ + +G ITI G ++E
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMS--RLLKKDSGEITIDGLELTSTPSKE 72
Query: 743 TFTRISGYCEQNDIHSPYVTVYESLL------YSAWLRLSSEVNSKTREMFVEEVMELVE 796
++S ++N I+S +TV L+ YS RL+ E + E +E +
Sbjct: 73 LAKKLSILKQENHINS-RLTV-RDLVGFGRFPYSQG-RLTKE-----DRRIINEAIEYLH 124
Query: 797 LNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVR 856
L L + + LS QR+R IA+ L + + +DEP + LD + + +M+ +R
Sbjct: 125 LEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILR 179
Query: 857 NTVDT-GRTVVCTIH 870
D G+T+V +H
Sbjct: 180 RLADELGKTIVVVLH 194
|
Length = 252 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 46/206 (22%), Positives = 80/206 (38%), Gaps = 44/206 (21%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKN----- 740
L ++ + +PG A++G TG+GKTTL+++L +G I I I +
Sbjct: 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78
Query: 741 -----QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELV 795
Q+TF SG T+ E++ + V E +
Sbjct: 79 IGVVLQDTFL-FSG------------TIMENIRLG---------RPNATDEEVIEAAKEA 116
Query: 796 ELNPLRQAL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 848
+ L +G LS +R+ L IA ++ +P I+ +DE TS +D
Sbjct: 117 GAHDFIMKLPNGYDTVLG-ENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETE 175
Query: 849 AVVMRTVRNTVDTGRTVVCTIHQPSI 874
++ + + GRT + H+ S
Sbjct: 176 KLIQEALEKLMK-GRTSIIIAHRLST 200
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 5e-13
Identities = 54/187 (28%), Positives = 94/187 (50%), Gaps = 14/187 (7%)
Query: 687 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK-NQETFT 745
V++N +S G L+G G+GK+T+ +L G + G IT+ G P ++
Sbjct: 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLA 75
Query: 746 RIS-GYCEQNDIHSPYVTVYESLL-YSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQA 803
R++ G Q D P TV E+LL + + +S+ + E + ++E L
Sbjct: 76 RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMST----REIEAVIPSLLEFARLESKADV 131
Query: 804 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGR 863
V L LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+
Sbjct: 132 RVAL-----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGK 186
Query: 864 TVVCTIH 870
T++ T H
Sbjct: 187 TILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 6e-13
Identities = 49/213 (23%), Positives = 82/213 (38%), Gaps = 58/213 (27%)
Query: 15 SGKVTYNGHDMHEFVPQRTAA-----YISQHDIHIGEMTVRETLAFSARCQGVGSRYDML 69
SG NG+ + R AA Y Q D E+TVRE L F AR +G+
Sbjct: 56 SGTAYINGYSIRT---DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKS---- 108
Query: 70 VELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRG 129
E + +L+VL L A+
Sbjct: 109 ------------------------------EIKEEVELLLRVLGLTDKANKRART----- 133
Query: 130 ISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALI---- 185
+SGG +++++ L+G L +DE ++GLD ++ I + + + G ++I
Sbjct: 134 LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI---LEVRKGRSIILTTH 190
Query: 186 SLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218
S+ E L D I ++SDG++ G + +
Sbjct: 191 SMD----EAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 6e-13
Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 13/162 (8%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFT 745
L+ VS G L AL+G +GSGKTTL+ ++AG R G I G + P +
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE---- 73
Query: 746 RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTR-EMFVEEVMELVELNPLRQAL 804
R G+ Q+ ++TV++++ + ++ SE + V E+++LV+L+ L
Sbjct: 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADR- 132
Query: 805 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 846
P LS QR+R+ +A L P ++ +DEP LDA+
Sbjct: 133 --YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAK 170
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 7e-13
Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 11/159 (6%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFT-RI 747
L+ V+ G L AL+G +GSGK+TL+ ++AG + +G I ++G + R
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHARDRK 73
Query: 748 SGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGL 807
G+ Q+ ++TV +++ + +R + K R VEE++ELV+L L
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKAR---VEELLELVQLEGLGDR---Y 127
Query: 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 846
P N LS QR+R+ +A L P ++ +DEP LDA+
Sbjct: 128 P--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAK 164
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 9e-13
Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 21/160 (13%)
Query: 703 ALMGVTGSGKTTLMDVLAG--RKTRGYITGNIT-ISGYPKNQETFTRISGYCEQNDIHSP 759
++G TGSGK+ L++ +AG + G I N I+ P + Y QN P
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI----SYVPQNYALFP 84
Query: 760 YVTVYESLLYSAWLRLSSEVNSKTREMFVEEVM---ELVELNPLRQALVGLPGVNGLSTE 816
++TVY+++ Y R + + + + + E++ L+ P LS
Sbjct: 85 HMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET-----------LSGG 133
Query: 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVR 856
+++R+ IA LV NP I+ +DEP S LD R + ++
Sbjct: 134 EQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELK 173
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 1e-12
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 3 ALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGV 62
ALAG+ + L SG+V NG + + ++ Y+ Q DI +TVRETL F+A+ +G+
Sbjct: 54 ALAGRR-TGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 1e-12
Identities = 50/191 (26%), Positives = 82/191 (42%), Gaps = 28/191 (14%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTR 746
L+GVS RPG + AL+G G+GK+TLM +L+G +G I I G P
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD----SGEILIDGKP------VA 73
Query: 747 ISGYCEQND-----IH-----SPYVTVYESL-LYSAWLRLSSEVNSKTREMFVEEVMELV 795
S + +H P ++V E++ L R ++ K E++ +
Sbjct: 74 FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARL 133
Query: 796 ELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTV 855
L+ LVG LS QR+ + IA L + ++ +DEPT+ L + + +
Sbjct: 134 GLDIDPDTLVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLI 188
Query: 856 RNTVDTGRTVV 866
R G ++
Sbjct: 189 RRLKAQGVAII 199
|
Length = 500 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 1e-12
Identities = 57/195 (29%), Positives = 86/195 (44%), Gaps = 25/195 (12%)
Query: 681 VHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT---GNITIS 735
K +L GVS G + AL+G G+GKTTL+ + G G I +IT
Sbjct: 8 AGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDIT-- 65
Query: 736 GYPKNQETFTRIS---GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVM 792
R GY + P +TV E+LL A+ R ++ K R +E V
Sbjct: 66 ----GLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKR--KAR---LERVY 116
Query: 793 ELV-ELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 851
EL L R+ L G LS +++ L IA L++ P ++ +DEP+ GL + +
Sbjct: 117 ELFPRLKERRKQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEI 171
Query: 852 MRTVRNTVDTGRTVV 866
+R D G T++
Sbjct: 172 FEAIRELRDEGVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 1e-12
Identities = 57/194 (29%), Positives = 95/194 (48%), Gaps = 17/194 (8%)
Query: 692 VSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITI-----SGYPKNQETFTR 746
VS G + L+G G+GKTT ++ G R GNI I S P +
Sbjct: 22 VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD--AGNIIIDDEDISLLPLHARARRG 79
Query: 747 ISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVG 806
I GY Q ++VY++L+ A L++ +++++ RE E+ME + LR ++
Sbjct: 80 I-GYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMG- 135
Query: 807 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVV 866
LS +R+R+ IA L ANP I +DEP +G+D + + R + + D+G V+
Sbjct: 136 ----QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVL 191
Query: 867 CTIH--QPSIDIFE 878
T H + ++ + E
Sbjct: 192 ITDHNVRETLAVCE 205
|
Length = 241 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 11/164 (6%)
Query: 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP-KNQE 742
V L+GVS + G L+G +G GKTTL+ ++AG +T +G I + G N
Sbjct: 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT--SGEILLDGKDITNLP 68
Query: 743 TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQ 802
R QN P++TV+E++ + L+ + K R V E ++LV+L
Sbjct: 69 PHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKER---VAEALDLVQLEGYAN 125
Query: 803 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 846
+ LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 126 RKP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 2e-12
Identities = 61/201 (30%), Positives = 93/201 (46%), Gaps = 26/201 (12%)
Query: 687 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDV--LAGRKTRGYIT-GNITI-SGYPKNQE 742
+L+G+ +PG + A++G +GSGKTTL+ L + G I G+ITI + +Q+
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 743 -----TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL 797
+ G+ QN P+ TV E+++ + V + +E EL+
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVI-----VKGEPKEEATARARELL-- 129
Query: 798 NPLRQALVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVM 852
A VGL G LS Q++R+ IA L P +I DEPTS LD V+
Sbjct: 130 -----AKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL 184
Query: 853 RTVRNTVDTGRTVVCTIHQPS 873
T+R RT+V H+ S
Sbjct: 185 NTIRQLAQEKRTMVIVTHEMS 205
|
Length = 250 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 3e-12
Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 19/187 (10%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI----TGNITISGYPKNQETF 744
L+ +S + G + L+G G+GKTT + ++ G I +G + G P +
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG------IILPDSGEVLFDGKPLDIAAR 69
Query: 745 TRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL 804
RI GY + P + V + L+Y A L+ + ++ R ++E +E +EL+
Sbjct: 70 NRI-GYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRR---IDEWLERLELSEYANK- 124
Query: 805 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRT 864
V LS ++++ ++ +P ++ +DEP SGLD ++ +R G+T
Sbjct: 125 ----RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKT 180
Query: 865 VVCTIHQ 871
V+ + HQ
Sbjct: 181 VILSTHQ 187
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 3e-12
Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 20/180 (11%)
Query: 697 RPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS------GY 750
RPG L+GV G+GKTT +L G T +G+ T++G + T IS GY
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAG----KSILTNISDVHQNMGY 2016
Query: 751 CEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGV 810
C Q D +T E L A LR V ++ E ++ + L+ L G
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAGT--- 2070
Query: 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIH 870
S +++L+ A+ L+ P ++ +DEPT+G+D +A ++ T+ + + GR VV T H
Sbjct: 2071 --YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 4e-12
Identities = 48/179 (26%), Positives = 86/179 (48%), Gaps = 18/179 (10%)
Query: 699 GVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQND-IH 757
G + AL+GV GSGK+TL L G +G I+I G P Q + Y Q++ +
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVRLA--SGKISILGQPTRQALQKNLVAYVPQSEEVD 90
Query: 758 SPYVTVYESLL------YSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811
+ + E ++ + WLR + + R++ V + V++ R +G
Sbjct: 91 WSFPVLVEDVVMMGRYGHMGWLRRAK---KRDRQI-VTAALARVDMVEFRHRQIG----- 141
Query: 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIH 870
LS Q+KR+ +A + +I +DEP +G+D + A ++ +R D G+T++ + H
Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTH 200
|
Length = 272 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 5e-12
Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 21/192 (10%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRI 747
+LN +S + G +TAL+G G GK+TL+ A T +G + + P + + ++
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPISMLSSRQL 74
Query: 748 SGYCE---QNDIHSPYVTVYESLLY------SAWLRLSSEVNSKTREMFVEEVMELVELN 798
+ Q+ + +TV E + Y S W RLS+E V + ME +N
Sbjct: 75 ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAE-----DNARVNQAMEQTRIN 129
Query: 799 PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNT 858
L + LS QR+R +A+ L + ++ +DEPT+ LD +MR +R
Sbjct: 130 HLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL 184
Query: 859 VDTGRTVVCTIH 870
G+TVV +H
Sbjct: 185 NTQGKTVVTVLH 196
|
Length = 255 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 5e-12
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 23/168 (13%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG-----YITGNITISGYPKNQET 743
LN +S + PG L L+G G+GKTTLMDV+ G KTR G+ ++ P+++
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITG-KTRPQEGEVLFDGDTDLTKLPEHR-- 77
Query: 744 FTRISGYCEQNDIHSPY--VTVYESLLY------SAWLRLSSEVNSKTREMFVEEVMELV 795
R G + + + +TV E+L S + L + + ++ R ++E++ +
Sbjct: 78 IARA-GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRR-IDELLATI 135
Query: 796 ELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 843
L R L L LS Q++ L I + L +P ++ +DEP +G+
Sbjct: 136 GLGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 5e-12
Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 25/190 (13%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI---TGNITISGYP--KNQET 743
L+ VS + G + +G G+GK+T M ++ G Y+ +G++ + G +N +
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG-----YLPPDSGSVQVCGEDVLQNPKE 72
Query: 744 FTRISGYCEQNDIHSP-YVTVY--ESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 800
R GY + H+P Y+ +Y E L + A + K R VEE++ELV L P
Sbjct: 73 VQRNIGYLPE---HNPLYLDMYVREYLQFIAGIYGMKGQLLKQR---VEEMIELVGLRPE 126
Query: 801 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD 860
+ +G LS R+R+ +A L+ +P ++ +DEPT+GLD V +R V +
Sbjct: 127 QHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPN-QLVEIRNVIKNIG 180
Query: 861 TGRTVVCTIH 870
+T++ + H
Sbjct: 181 KDKTIILSTH 190
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 6e-12
Identities = 60/194 (30%), Positives = 90/194 (46%), Gaps = 22/194 (11%)
Query: 687 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK---NQET 743
LL+ +S F G +T L+G GSGK+TL+ +L GR + G I + P + +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRH-QPPSEGEILLDAQPLESWSSKA 82
Query: 744 FTRISGYCEQNDIHSPYVTVYESLL------YSAWLRLSSEVNSKTREMFVEEVMELVEL 797
F R Y Q + +TV E + + A R + K VEE + LV L
Sbjct: 83 FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREK-----VEEAISLVGL 137
Query: 798 NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAVVMRTVR 856
PL L V+ LS +R+R IA+ + + + +DEPTS LD A V+ R
Sbjct: 138 KPLAHRL-----VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHR 192
Query: 857 NTVDTGRTVVCTIH 870
+ + G TV+ +H
Sbjct: 193 LSQERGLTVIAVLH 206
|
Length = 265 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-11
Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 22/163 (13%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRI 747
L VS G L ++G +G GKTTL++++AG T G+I ++G R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAER- 76
Query: 748 SGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGL 807
G QN+ P++ V +++ + L+L + R +++ ALVGL
Sbjct: 77 -GVVFQNEALLPWLNVIDNVAFG--LQLRG-IEKAQRREIAHQML----------ALVGL 122
Query: 808 PG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 845
G + LS R+R+ IA L P ++ +DEP LDA
Sbjct: 123 EGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165
|
Length = 259 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 1e-11
Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 20/155 (12%)
Query: 698 PGV-LTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG---YPKNQETFT----RISG 749
PG +TA+ G +GSGKTTL+ ++AG TR G I ++G + + F R G
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGL-TRPD-EGEIVLNGRTLFDSRKGIFLPPEKRRIG 78
Query: 750 YCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPG 809
Y Q P+++V +L Y R + E V+EL+ + L L LPG
Sbjct: 79 YVFQEARLFPHLSVRGNLRYGMK-----RARPSERRISFERVIELLGIGHL---LGRLPG 130
Query: 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
LS +++R+ I L+++P ++ MDEP + LD
Sbjct: 131 --RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 56/187 (29%), Positives = 93/187 (49%), Gaps = 16/187 (8%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFT 745
+NGVS + + G + L+G G+GKTT ++ G + G I I+ P ++
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARL 75
Query: 746 RISGYCEQNDIHSPY--VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQA 803
I GY Q S + +TV E++L A L + ++ K RE +EE++E + LR++
Sbjct: 76 GI-GYLPQE--ASIFRKLTVEENIL--AVLEIR-GLSKKEREEKLEELLEEFHITHLRKS 129
Query: 804 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGR 863
LS +R+R+ IA L NP + +DEP +G+D A + + ++ D G
Sbjct: 130 KAS-----SLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGI 184
Query: 864 TVVCTIH 870
V+ T H
Sbjct: 185 GVLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 2e-11
Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 29/168 (17%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFT 745
L +S + + G L+G +G GKTTL+ ++AG R+T G I G I+ P + +
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY- 78
Query: 746 RISGYCEQNDIHSPYVTVYESLLYSAWLR--LSSEVNSKTREMFVEEVMELVELNPLRQA 803
G Q+ P +TV +++ Y R +EV + E+
Sbjct: 79 ---GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELL---------------D 120
Query: 804 LVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 846
LVGLPG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 121 LVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 3e-11
Identities = 57/207 (27%), Positives = 87/207 (42%), Gaps = 36/207 (17%)
Query: 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY--ITGNITISGYPKN 740
D +L +S G AL+G +GSGK+TL++++ R Y +G I I G+ +
Sbjct: 12 GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLI----PRFYDVDSGRILIDGH--D 65
Query: 741 QETFT-----RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELV 795
+T R G Q D+ TV E++ Y EEV E
Sbjct: 66 VRDYTLASLRRQIGLVSQ-DVFLFNDTVAENIAYG------------RPGATREEVEEAA 112
Query: 796 ELNPLRQALVGLP-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 846
+ ++ LP G G LS QR+R+ IA L+ +P I+ +DE TS LD
Sbjct: 113 RAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTE 172
Query: 847 AAAVVMRTVRNTVDTGRTVVCTIHQPS 873
+ +V + + RT H+ S
Sbjct: 173 SERLVQAALERLMK-NRTTFVIAHRLS 198
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 3e-11
Identities = 63/252 (25%), Positives = 106/252 (42%), Gaps = 22/252 (8%)
Query: 625 RDYVRRRNSSSQSRETTIETDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDD 684
R ++ + E E + ++ L S+ F+ +++S +
Sbjct: 293 SLLQRASAAAERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSFS------------YPG 340
Query: 685 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQ 741
K +L +S + PG A++G +GSGK+TL+ +L T G I I I +
Sbjct: 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDI--SL 398
Query: 742 ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR 801
++ + G Q D T+ E++ E+ + E + L
Sbjct: 399 DSLRKRIGIVSQ-DPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIA--NLPDGY 455
Query: 802 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT 861
+VG GVN LS QR+RL IA L+ NP I+ +DE TS LD A++ ++ +
Sbjct: 456 DTIVGERGVN-LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK- 513
Query: 862 GRTVVCTIHQPS 873
GRT + H+ S
Sbjct: 514 GRTTLIIAHRLS 525
|
Length = 567 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-11
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 18/133 (13%)
Query: 713 TTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS----GYCEQNDIHSPYVTVYESLL 768
+TL+ ++ G +G I + G + ++ G Q+ P +TV E+L
Sbjct: 1 STLLKLITGLLQ--PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 769 YSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELV 828
+ K + EE +E V L V LS Q++R+ IA L+
Sbjct: 59 FGL--------RDKEADARAEEALERVGLPDFL----DREPVGTLSGGQKQRVAIARALL 106
Query: 829 ANPSIIFMDEPTS 841
P ++ +DEPT+
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 4e-11
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 14/94 (14%)
Query: 127 LRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSL------GQFNHILN 180
LRG+S QRKR+T G L LF+DE ++GLDS ++IV L GQ
Sbjct: 106 LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQ------ 159
Query: 181 GTALISLLQPAPEVYNLFDDIILV-SDGQIVYQG 213
L ++ QP+ ++ FD ++L+ G+ VY G
Sbjct: 160 -AILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 5e-11
Identities = 54/186 (29%), Positives = 81/186 (43%), Gaps = 12/186 (6%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFT 745
L VS G L G +G+GK+TL+ ++ G R TRG I +S + F
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 746 RIS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL 804
R G Q+ P TVYE++ V K V E+++L L+
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVALPL------RVIGKPPREIRRRVSEVLDLVGLKHKA 131
Query: 805 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRT 864
LP + LS +++R+ IA +V P+++ DEPT LD + +MR G T
Sbjct: 132 RALP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189
Query: 865 VVCTIH 870
V+ H
Sbjct: 190 VLMATH 195
|
Length = 223 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 5e-11
Identities = 55/199 (27%), Positives = 83/199 (41%), Gaps = 38/199 (19%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY--ITGNITISGYPKNQ---ET 743
L G+S PG AL+G +G GK+T++ +L R Y +G I + G
Sbjct: 19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLL----ERFYDPTSGEILLDGVDIRDLNLRW 74
Query: 744 FTRISGYCEQNDIHSP---YVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 800
G Q P T+ E++ Y T E VEE + ++
Sbjct: 75 LRSQIGLVSQE----PVLFDGTIAENIRYGK--------PDATDEE-VEEAAKKANIHDF 121
Query: 801 RQALVGLP-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 851
++ LP G G LS Q++R+ IA L+ NP I+ +DE TS LDA + +V
Sbjct: 122 ---IMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLV 178
Query: 852 MRTVRNTVDTGRTVVCTIH 870
+ + GRT + H
Sbjct: 179 QEAL-DRAMKGRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 5e-11
Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 38/175 (21%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQ---- 741
LN +S PG L ++G G+GKTT+MDV+ G R G + G ++G P++Q
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77
Query: 742 ---ETFTRISGYCEQNDIHSPYVTVYESLLYSA----------WLRLSSEVNSKTREMFV 788
F + + + +TV+E+L + + RLS+E + +
Sbjct: 78 GIGRKFQKPTVF--------ENLTVFENLELALPRDKSVFASLFFRLSAEEKDR-----I 124
Query: 789 EEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 843
EEV+E + L L GL LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 125 EEVLETIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 6e-11
Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 24/200 (12%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISG---YPKNQ 741
++GVS + G + ++G +GSGK+ L + G K I G I G ++
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 742 ETFTRISG----YCEQNDIHS--PYVTV----YESLLYSAWLRLSSEVNSKTREMFVEEV 791
+ +I G Q+ + S P +T+ E L E + E+
Sbjct: 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIEL----- 134
Query: 792 MELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 851
+ELV + + L P + LS R+R+ IA+ L NP ++ DEPT+ LD A +
Sbjct: 135 LELVGIPDPERRLKSYP--HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQI 192
Query: 852 MRTVRNTV-DTGRTVVCTIH 870
+ ++ + G ++ H
Sbjct: 193 LDLLKELQREKGTALILITH 212
|
Length = 316 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 6e-11
Identities = 53/202 (26%), Positives = 80/202 (39%), Gaps = 22/202 (10%)
Query: 675 EMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNI 732
E D L +G+S G + G GSGKTTL+ +LAG G +
Sbjct: 2 EADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL----AGRV 57
Query: 733 TISGYPKNQETFTRISG--YCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEE 790
++G P + + + G Y ++V E+L + W S+ VEE
Sbjct: 58 LLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRF--WHADHSDEQ-------VEE 108
Query: 791 VMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAV 850
+ V LN V LS Q++R+ +A L++ + +DEPT+ LD A
Sbjct: 109 ALARVGLNGFEDRPV-----AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVAR 163
Query: 851 VMRTVRNTVDTGRTVVCTIHQP 872
+ G VV T HQ
Sbjct: 164 FAEAMAGHCARGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 6e-11
Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 33/191 (17%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTR 746
+N +S + L+G G+GK+TL+ ++ G R T +G I G+P +TR
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHP-----WTR 66
Query: 747 ISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTR-------EMFVEEVMELVELNP 799
D+H + LY L++ N K + ++EV+ +V+L
Sbjct: 67 -------KDLHKIGSLIESPPLYE---NLTARENLKVHTTLLGLPDSRIDEVLNIVDLTN 116
Query: 800 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV 859
+ S ++RL IA+ L+ +P ++ +DEPT+GLD + +R+
Sbjct: 117 TGKKKAK-----QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFP 171
Query: 860 DTGRTVVCTIH 870
+ G TV+ + H
Sbjct: 172 EQGITVILSSH 182
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 6e-11
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 20/152 (13%)
Query: 698 PGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGN---ITISGYPKNQETFTRISGYCE 752
G+ TAL G +GSGKT+L++++AG R G I N + + R GY
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVF 82
Query: 753 QNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNG 812
Q+ P+ TV +L Y W S + ++++ L+ + L L PG
Sbjct: 83 QDARLFPHYTVRGNLRYGMW-------KSMRAQF--DQLVALLGIEHL---LDRYPGT-- 128
Query: 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 6e-11
Identities = 48/193 (24%), Positives = 88/193 (45%), Gaps = 16/193 (8%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITI-----SGYPKNQET 743
L ++ PG + L G +GSGKTTL+ ++ G R G++ + G + +
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGG--LRSVQEGSLKVLGQELYGASEKELV 78
Query: 744 FTRIS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQ 802
R + GY Q ++T +++ + L L ++ + ++E V L
Sbjct: 79 QLRRNIGYIFQAHNLLGFLTARQNVQMA--LELQPNLSYQEARERARAMLEAVGLG---D 133
Query: 803 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV-DT 861
L P + LS Q++R+ IA LV P ++ DEPT+ LD+++ V+ ++ +
Sbjct: 134 HLDYYP--HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQ 191
Query: 862 GRTVVCTIHQPSI 874
G T++ H I
Sbjct: 192 GCTILIVTHDNRI 204
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 8e-11
Identities = 60/200 (30%), Positives = 93/200 (46%), Gaps = 33/200 (16%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 748
L ++ G L ++G +G GKTTL++++AG Y G+IT+ G P R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAER-- 72
Query: 749 GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLP 808
G QN+ P+ V +++ + L+L+ V R +++ VGL
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFG--LQLAG-VEKMQRLEIAHQML----------KKVGLE 119
Query: 809 GVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAVVMRTVRNTV-- 859
G LS QR+R+ IA L ANP ++ +DEP LDA R M+T+ +
Sbjct: 120 GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQ---MQTLLLKLWQ 176
Query: 860 DTGRTVVCTIHQPSIDIFEA 879
+TG+ V+ H DI EA
Sbjct: 177 ETGKQVLLITH----DIEEA 192
|
Length = 255 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 9e-11
Identities = 59/245 (24%), Positives = 95/245 (38%), Gaps = 40/245 (16%)
Query: 635 SQSRETTIETDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSG 694
Q E T +Q G L S T+ + L +
Sbjct: 318 DQKPEVTFPDEQTATTGQALELRNVSFTYPG------------------QQTKALKNFNL 359
Query: 695 AFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQN 754
G A++G +GSGK+TL+ +LAG G+IT++G I+ EQ
Sbjct: 360 TLAQGEKVAILGRSGSGKSTLLQLLAG--AWDPQQGSITLNGVE--------IASLDEQA 409
Query: 755 DIHSPYVTVYESLLYSAWLR---LSSEVNSKTREMFVEEVMELVEL-NPLRQALVGLP-- 808
+ V L+S LR + ++ E++ ++ V L L A GL
Sbjct: 410 LRETISVLTQRVHLFSGTLRDNLRLANPDASDEELW--AALQQVGLEKLLESAPDGLNTW 467
Query: 809 ---GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTV 865
G LS +R+RL +A L+ + + +DEPT GLD V+ + + G+T+
Sbjct: 468 LGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTL 526
Query: 866 VCTIH 870
+ H
Sbjct: 527 LMVTH 531
|
Length = 573 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 1e-10
Identities = 57/198 (28%), Positives = 90/198 (45%), Gaps = 20/198 (10%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFT 745
++ V+ G L+G +GSGKTT + ++ T G I IS E
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLD-PVELRR 75
Query: 746 RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALV 805
+I GY Q P++TV E++ L + K R +E+++LV L+P +
Sbjct: 76 KI-GYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKR---ADELLDLVGLDP-SEYAD 130
Query: 806 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAA-VVMRTVRNTVDTG 862
P + LS Q++R+ +A L A+P I+ MDEP LD R ++ ++ G
Sbjct: 131 RYP--HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE--LG 186
Query: 863 RTVVCTIHQPSIDIFEAF 880
+T+V H DI EA
Sbjct: 187 KTIVFVTH----DIDEAL 200
|
Length = 309 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 52/190 (27%), Positives = 82/190 (43%), Gaps = 12/190 (6%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYI-TGNITISGYPKNQETFT 745
L+ VS R G L G +G+GKTTL+ +L G +RG + ++ Q
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLL 77
Query: 746 RIS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL 804
R G Q+ P TVYE++ +R E + R V + V L A
Sbjct: 78 RRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRR---VGAALRQVGLEHKADAF 134
Query: 805 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRT 864
P LS +++R+ IA +V +P ++ DEPT LD + ++ ++ G T
Sbjct: 135 ---PEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTT 189
Query: 865 VVCTIHQPSI 874
V+ H S+
Sbjct: 190 VIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 1e-10
Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 17/175 (9%)
Query: 677 KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG 736
K G + +L +L GV + G AL+G +GSGK+TL+ +LAG +G +++ G
Sbjct: 14 KSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVG 71
Query: 737 YP---KNQETFTRIS----GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVE 789
P ++E ++ G+ Q+ + P + E++ A LR S S+
Sbjct: 72 QPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSR------N 125
Query: 790 EVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
L+E L + L LP LS +++R+ +A P ++F DEPT LD
Sbjct: 126 GAKALLEQLGLGKRLDHLPA--QLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 1e-10
Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 11/187 (5%)
Query: 687 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP-KNQETFT 745
+L+ +S G L AL+G +G GKTTL+ +AG +TG I I+ +
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHK 78
Query: 746 RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALV 805
R QN P++ V +++ + + + + R V + ++LV L A
Sbjct: 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAER---VADALKLVGLG---DAAA 132
Query: 806 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT--GR 863
LP LS ++R+ IA + P ++ +DEP S LDA A + + +
Sbjct: 133 HLP--AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL 190
Query: 864 TVVCTIH 870
T++C H
Sbjct: 191 TILCVTH 197
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 1e-10
Identities = 52/203 (25%), Positives = 87/203 (42%), Gaps = 40/203 (19%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT---GNITISGYPKNQ--- 741
LL+ VS RPG + A++G G+GK+TL+ L+ G ++ G + ++G P
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS-----GELSPDSGEVRLNGRPLADWSP 71
Query: 742 -ETFTRISGYCEQNDIHSPYVTVYE--SLLYSAWLRLSSEVNSKTREMFVEEVMELVELN 798
E R + + + + P+ TV E ++ + +E ++ V + V+L
Sbjct: 72 AELARRRAVLPQHSSLSFPF-TVEEVVAMGRAPHGLSRAEDDA-----LVAAALAQVDLA 125
Query: 799 PLR----QALVGLPGVNGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAA 848
L L G G EQ +R+ +A L P + +DEPTS LD
Sbjct: 126 HLAGRDYPQLSG--G------EQ-QRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQ 176
Query: 849 AVVMRTVRN-TVDTGRTVVCTIH 870
V+R R + G V+ +H
Sbjct: 177 HHVLRLARQLAHERGLAVIVVLH 199
|
Length = 258 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 1e-10
Identities = 60/201 (29%), Positives = 89/201 (44%), Gaps = 28/201 (13%)
Query: 682 HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYP- 738
+ D L G++ G + AL+G G+GK+TL G + T +G + I G P
Sbjct: 11 YPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT----SGEVLIKGEPI 66
Query: 739 ----KNQETFTRISGYCEQN---DIHSPYVTVYESLLYSAW-LRLS-SEVNSKTREMFVE 789
K+ + G QN + +P TV E + + L LS EV + +E
Sbjct: 67 KYDKKSLLEVRKTVGIVFQNPDDQLFAP--TVEEDVAFGPLNLGLSKEEVEKRVKEALKA 124
Query: 790 EVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 849
ME E P LS Q+KR+ IA L P II +DEPTSGLD A+
Sbjct: 125 VGMEGFENKPPHH----------LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGAS 174
Query: 850 VVMRTVRNTVDTGRTVVCTIH 870
+M+ + + G T++ + H
Sbjct: 175 QIMKLLYDLNKEGITIIISTH 195
|
Length = 275 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 1e-10
Identities = 61/240 (25%), Positives = 104/240 (43%), Gaps = 38/240 (15%)
Query: 647 PKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMG 706
++ M LP L+ + +T P K L G+S + + G A++G
Sbjct: 303 SRDPAMPLPEPEGHLSVENVTIVP--PGGKKPT---------LRGISFSLQAGEALAIIG 351
Query: 707 VTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETFTRISGYCEQNDIHSPYVTV 763
+GSGK+TL ++ G +G++ + G Q ETF + GY Q D+ TV
Sbjct: 352 PSGSGKSTLARLIVG--IWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQ-DVELFPGTV 408
Query: 764 YESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLP---------GVNGLS 814
E++ R + E+++E +L + + ++ LP G LS
Sbjct: 409 AENI-----ARFGENADP-------EKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLS 456
Query: 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSI 874
QR+R+ +A L +P ++ +DEP S LD + ++ G TVV H+PS+
Sbjct: 457 GGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSL 516
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 2e-10
Identities = 47/194 (24%), Positives = 77/194 (39%), Gaps = 73/194 (37%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLM-------DVLAGRKTRGYITGNITISGYPKNQ 741
L ++ +TAL+G +G GK+TL+ D++ G + + G + + G
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDG----- 73
Query: 742 ETFTRISGYCEQNDIHSPYV---------------------TVYESLLYSAWLRLSSEVN 780
+I+ P V ++Y+++ Y LRL +
Sbjct: 74 ------------KNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYG--LRLHGIKD 119
Query: 781 SKTREMFVEEVMELVELNPLRQALVGL----------PGVNGLSTEQRKRLTIAVELVAN 830
E+ E+VE + L++A L GLS Q++RL IA L
Sbjct: 120 K--------ELDEIVE-SSLKKA--ALWDEVKDRLHKSA-LGLSGGQQQRLCIARALAVK 167
Query: 831 PSIIFMDEPTSGLD 844
P ++ MDEPTS LD
Sbjct: 168 PEVLLMDEPTSALD 181
|
Length = 253 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 65/210 (30%), Positives = 98/210 (46%), Gaps = 44/210 (20%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTL------MDVLAGRKTRGYITGNITISG---YPK 739
LN VS F P +TAL+G +GSGK+TL M+ L T ITG+I +G Y
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT---ITGSIVYNGHNIYSP 77
Query: 740 NQETF---TRISGYCEQNDIHSPY-VTVYESLLYSAWLRLSSEVNSKTREMFVE------ 789
+T I +Q + P+ +++YE+++Y LRL + + + VE
Sbjct: 78 RTDTVDLRKEIGMVFQQPN---PFPMSIYENVVYG--LRLKGIKDKQVLDEAVEKSLKGA 132
Query: 790 ----EVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 845
EV + + + L GLS Q++R+ IA L +P II +DEPTS LD
Sbjct: 133 SIWDEVKDRLHDSAL-----------GLSGGQQQRVCIARVLATSPKIILLDEPTSALDP 181
Query: 846 RAAAVVMRTVRNTVD--TGRTVVCTIHQPS 873
+A + T+ D T V ++ Q S
Sbjct: 182 ISAGKIEETLLGLKDDYTMLLVTRSMQQAS 211
|
Length = 252 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 2e-10
Identities = 58/206 (28%), Positives = 89/206 (43%), Gaps = 32/206 (15%)
Query: 682 HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT--GNITISGYPK 739
D +L+ ++ +PG ++G +GSGK+TL +L R Y G + + G
Sbjct: 466 APDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLL----QRLYTPQHGQVLVDGVDL 521
Query: 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE 796
R G V + E++L+S +R + E V+ +
Sbjct: 522 AIADPAWLRRQMG-----------VVLQENVLFSRSIR--DNIALCNPGAPFEHVIHAAK 568
Query: 797 LNPLRQALVGLP-GVN--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 847
L + LP G N LS QR+R+ IA LV NP I+ DE TS LD +
Sbjct: 569 LAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYES 628
Query: 848 AAVVMRTVRNTVDTGRTVVCTIHQPS 873
A++MR +R + GRTV+ H+ S
Sbjct: 629 EALIMRNMR-EICRGRTVIIIAHRLS 653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 20/192 (10%)
Query: 685 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETF 744
+L GVS + G + A++G +GSGK+TL+ +L G +G + +G ++ +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKLSS 74
Query: 745 TRIS-------GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL 797
+ G+ Q P T E++ + S +K R E++E V L
Sbjct: 75 NERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAY---EMLEKVGL 131
Query: 798 NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV---MRT 854
+ P LS +R+R+ IA LV PS++ DEPT LD A ++ M
Sbjct: 132 ---EHRINHRPS--ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLE 186
Query: 855 VRNTVDTGRTVV 866
+ ++T VV
Sbjct: 187 LNRELNTSFLVV 198
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 58/191 (30%), Positives = 88/191 (46%), Gaps = 24/191 (12%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGY-P-KNQETF 744
L G+S G + +G G+GKTT + +L+G + T +G + ++G P K ++ F
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT----SGEVRVAGLVPWKRRKKF 92
Query: 745 -TRISGYCEQNDIHSPYVTVYESL-LYSAWLRLSSEVNSKTREMFVEEVMELVEL--NPL 800
RI Q + V +S L +A L K + E +++L EL P+
Sbjct: 93 LRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSE-LLDLEELLDTPV 151
Query: 801 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV- 859
RQ LS QR R IA L+ P I+F+DEPT GLD A + ++
Sbjct: 152 RQ----------LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNR 201
Query: 860 DTGRTVVCTIH 870
+ G TV+ T H
Sbjct: 202 ERGTTVLLTSH 212
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 50/192 (26%), Positives = 90/192 (46%), Gaps = 18/192 (9%)
Query: 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQE 742
DK + + +S PG + L+G G+GKTT ++ G G IT +G P +QE
Sbjct: 13 GDKKAV-DNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQE 69
Query: 743 TFTRISGYC-EQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR 801
RI GY E+ ++ P +TV + L Y A L+ E+ +++ +E R
Sbjct: 70 IKNRI-GYLPEERGLY-PKMTVEDQLKYLAELK-----GMPKAEI-QKKLQAWLE----R 117
Query: 802 QALVGLPG--VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV 859
+VG + LS ++++ ++ P ++ +DEP SGLD ++ +
Sbjct: 118 LEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELK 177
Query: 860 DTGRTVVCTIHQ 871
+ G T++ + H+
Sbjct: 178 EEGATIIFSSHR 189
|
Length = 300 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 2e-10
Identities = 49/183 (26%), Positives = 74/183 (40%), Gaps = 33/183 (18%)
Query: 687 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTR 746
LL VS PG L+G G+GK+TL+ +LAG +G +T PK R
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE--PDSGEVTR---PKG----LR 67
Query: 747 ISGYCEQNDIHSPYVTVYESLL-----YSAWLRLSSEVNSKTREMFVEEVMELVEL---- 797
+ GY Q P TV + ++ L E + + E + EL L
Sbjct: 68 V-GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEEL 126
Query: 798 ------NPLRQALVGLPGVNGLSTE-------QRKRLTIAVELVANPSIIFMDEPTSGLD 844
+AL+GL G R+R+ +A L+ P ++ +DEPT+ LD
Sbjct: 127 DGWTLEARAEEALLGL-GFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLD 185
Query: 845 ARA 847
+
Sbjct: 186 LES 188
|
Length = 530 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 3e-10
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 44/208 (21%)
Query: 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY--ITGNITISGYP-- 738
D +L VS G A++G +GSGK+T++ +L R Y +G+I I G
Sbjct: 11 DPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLL----FRFYDVSSGSILIDGQDIR 66
Query: 739 -KNQETFTRISGYCEQ-----NDIHSPYVTVYESLLYSAWLRLS-SEVNSKTREMFVEEV 791
++ R G Q ND T+ ++ Y R ++ EEV
Sbjct: 67 EVTLDSLRRAIGVVPQDTVLFND------TIGYNIRYG---RPDATD----------EEV 107
Query: 792 MELVELNPLRQALVGLP-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSG 842
+E + + ++ P G G LS +++R+ IA ++ NP I+ +DE TS
Sbjct: 108 IEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSA 167
Query: 843 LDARAAAVVMRTVRNTVDTGRTVVCTIH 870
LD + +R V GRT + H
Sbjct: 168 LDTHTEREIQAALR-DVSKGRTTIVIAH 194
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 3e-10
Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 19/194 (9%)
Query: 690 NGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISG 749
VS PG + ++G +GSGK+TL+ LAGR G T + ++S
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD--HGTATYIMRSGAELELYQLSE 77
Query: 750 YCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFV------------EEVMELVEL 797
+ + + + V+++ +R+S+ N R M + ++ +E VE+
Sbjct: 78 AERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEI 137
Query: 798 NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN 857
+P R + LP S ++RL IA LV P ++FMDEPT GLD A ++ +R
Sbjct: 138 DPTR--IDDLP--RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRG 193
Query: 858 TV-DTGRTVVCTIH 870
V D G V+ H
Sbjct: 194 LVRDLGLAVIIVTH 207
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 3e-10
Identities = 54/177 (30%), Positives = 82/177 (46%), Gaps = 35/177 (19%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ------ 741
+L+ VS + G + A++G +GSGK+TL+ +L G T +G++ +G P ++
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAK 81
Query: 742 -ETFTRISGYCEQNDIHSPYVTVYES----LLYSAWLRLSSEVNSKTREMFVEEVMELVE 796
E + G+ Q P T E+ LL +E+NS+ EM
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKP--AEINSRALEML--------- 130
Query: 797 LNPLRQALVGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 848
A VGL + LS +R+R+ IA LV NP ++ DEPT LDAR A
Sbjct: 131 ------AAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 3e-10
Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 18/198 (9%)
Query: 685 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP---KNQ 741
+L +L GV + G A++G +GSGK+TL+ VLAG +G + + G P ++
Sbjct: 22 ELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLGQPLHKLDE 79
Query: 742 ETFTRIS----GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL 797
+ + G+ Q+ P +T E++ LR + + L +
Sbjct: 80 DARAALRARHVGFVFQSFHLIPNLTALENVALPLELR-----GESSADSRAGAKALLEAV 134
Query: 798 NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN 857
L + L P LS +++R+ +A P ++F DEPT LD + +
Sbjct: 135 G-LGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFA 191
Query: 858 TV-DTGRTVVCTIHQPSI 874
+ G T+V H P +
Sbjct: 192 LNRERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 4e-10
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 17/166 (10%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK-----NQE 742
+L +S PG A++G G+GKTTL+ +L G +G++T+ G E
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS--SGDVTLLGRRFGKGETIFE 103
Query: 743 TFTRISGYC--EQNDIHSPYVTVYESLL--YSAWLRLSSEVNSKTREMFVEEVMELVELN 798
RI G E ++ TV + +L + A + + E + + ++EL+
Sbjct: 104 LRKRI-GLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAK 162
Query: 799 PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
L G LS +++R+ IA LV +P ++ +DEP GLD
Sbjct: 163 HLADRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLD 203
|
Length = 257 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 4e-10
Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 34/205 (16%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGN------ITISGYPKNQE 742
L+ V G + AL+G +GSGK+TL+ R G ITG+ I + G +E
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLL-----RHLSGLITGDKSAGSHIELLGRTVQRE 74
Query: 743 TFTRISGYCEQNDIHSPYV----------TVYESLLYSAWLRLSSEVNSKTREMFVEEVM 792
R++ ++ ++ Y+ +V E++L A L S +T +
Sbjct: 75 G--RLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGA---LGSTPFWRTCFSWFTREQ 129
Query: 793 ELVELNPLRQALVGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 847
+ L L + VG+ V+ LS Q++R+ IA L+ +I DEP + LD +
Sbjct: 130 KQRALQALTR--VGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPES 187
Query: 848 AAVVMRTVRNTVDT-GRTVVCTIHQ 871
A +VM T+R+ G TVV T+HQ
Sbjct: 188 ARIVMDTLRDINQNDGITVVVTLHQ 212
|
Length = 262 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 4e-10
Identities = 61/218 (27%), Positives = 94/218 (43%), Gaps = 34/218 (15%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 748
L+ +S R G + ALMG G+GK+TL+ +L+G G+I I G F +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMR---FASTT 74
Query: 749 GYCEQND--IH-----SPYVTVYESLLYSAWL-RLSSEVNSKTREMFVEEVMEL-----V 795
I+ P +TV E+L +L +L + R + E E V
Sbjct: 75 AALAAGVAIIYQELHLVPEMTVAENL----YLGQLPHKGGIVNRRLLNYEAREQLEHLGV 130
Query: 796 ELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTV 855
+++P + LS QR+ + IA L N +I DEPTS L AR + R +
Sbjct: 131 DIDPDTP-------LKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVI 183
Query: 856 RNTVDTGRTVVCTIHQPSIDIFEAFDAGIPGVSKIRDG 893
R GR ++ H+ +IF DA ++ +DG
Sbjct: 184 RELRAEGRVILYVSHRME-EIFALCDA----ITVFKDG 216
|
Length = 501 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 5e-10
Identities = 54/204 (26%), Positives = 86/204 (42%), Gaps = 43/204 (21%)
Query: 692 VSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYC 751
VS PG + ++G +GSGKTTL+ ++GR + T T
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGR--------------LTPDAGTVTYRMRDG 70
Query: 752 EQNDIHSPYVTVYESLLYSAW------------LRLSSEVNSKTREMFV----------- 788
+ D+++ LL + W +++S+ N R M +
Sbjct: 71 QPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAE 130
Query: 789 -EEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 847
++ +E VE++ R + LP S ++RL IA LV P ++FMDEPT GLD
Sbjct: 131 AQDWLEEVEIDLDR--IDDLP--RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSV 186
Query: 848 AAVVMRTVRNTV-DTGRTVVCTIH 870
A ++ +R V + G VV H
Sbjct: 187 QARLLDLLRGLVRELGLAVVIVTH 210
|
Length = 258 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 7e-10
Identities = 57/211 (27%), Positives = 86/211 (40%), Gaps = 44/211 (20%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT---GNITISGYPKNQETF 744
+N ++ G L+G +GSGKTT M + I G I I G ++
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTM-----KMINRLIEPTSGEIFIDGEDIREQDP 70
Query: 745 TRIS---GYCEQNDIHSPYVTVYE------SLLYSAWLRLSSEVNSKTREMFVEEVMELV 795
+ GY Q P++TV E LL W + + +E++ LV
Sbjct: 71 VELRRKIGYVIQQIGLFPHMTVEENIALVPKLL--KWPK-------EKIRERADELLALV 121
Query: 796 ELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRT- 854
L+P + P LS Q++R+ +A L A+P ++ MDEP LD + R
Sbjct: 122 GLDP-AEFADRYPH--ELSGGQQQRVGVARALAADPPLLLMDEPFGALDP-----ITRDQ 173
Query: 855 -----VRNTVDTGRTVVCTIHQPSIDIFEAF 880
R + G+T+V H DI EAF
Sbjct: 174 LQEEFKRLQQELGKTIVFVTH----DIDEAF 200
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 7e-10
Identities = 52/155 (33%), Positives = 74/155 (47%), Gaps = 18/155 (11%)
Query: 704 LMGVTGSGKTTLMDVLAG--RKTRG--YITGNITISGYPKNQETFTRISGYCEQNDIHSP 759
L+G +G GKTT + ++AG T G YI G PK+ R QN P
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD-----RDIAMVFQNYALYP 85
Query: 760 YVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 819
++TVY+++ + LR + R V EV EL+++ L L P LS QR+
Sbjct: 86 HMTVYDNIAFGLKLRKVPKDEIDER---VREVAELLQIEHL---LDRKP--KQLSGGQRQ 137
Query: 820 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRT 854
R+ + +V P + MDEP S LDA+ V MR
Sbjct: 138 RVALGRAIVREPKVFLMDEPLSNLDAK-LRVQMRA 171
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 8e-10
Identities = 42/170 (24%), Positives = 68/170 (40%), Gaps = 38/170 (22%)
Query: 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQE 742
D +LL +S G A++G G+GK+TL+ +LAG G ++G + + G
Sbjct: 332 DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGEL--GPLSGTVKV-GETVK-- 386
Query: 743 TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQ 802
GY +Q+ KT + E + +R
Sbjct: 387 -----IGYFDQH--------------RDELD------PDKTVLEELSEGFPDGDEQEVRA 421
Query: 803 AL--VGLPG------VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
L G G V LS ++ RL +A L+ P+++ +DEPT+ LD
Sbjct: 422 YLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 8e-10
Identities = 54/203 (26%), Positives = 88/203 (43%), Gaps = 29/203 (14%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-ETFTR- 746
L GV+ + G + A+MG GSGK+TL +AG + +G I G + E R
Sbjct: 16 LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERA 75
Query: 747 -----ISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR 801
++ Q P V+ E +LR S +N++ R EE ++L++ L
Sbjct: 76 RAGLFLA---FQYPEEIPGVSNLE------FLR--SALNAR-RSARGEEPLDLLDFLKLL 123
Query: 802 Q---ALVGLP------GVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 851
+ AL+G+ VN G S ++KR I + P + +DE SGLD A +V
Sbjct: 124 KAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIV 183
Query: 852 MRTVRNTVDTGRTVVCTIHQPSI 874
+ + R+ + H +
Sbjct: 184 AEGINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 8e-10
Identities = 53/192 (27%), Positives = 82/192 (42%), Gaps = 24/192 (12%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT---GNITISGYPKNQET 743
L GVS G + AL+G G+GKTTL+ + G R G I +IT
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDIT------GLPP 72
Query: 744 FTRIS---GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELV-ELNP 799
R Y + P +TV E+LL A+ R + + +E +EEV EL L
Sbjct: 73 HERARLGIAYVPEGRRIFPRLTVEENLLLGAYAR----RDKEAQERDLEEVYELFPRLKE 128
Query: 800 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV 859
R G LS +++ L IA L++ P ++ +DEP+ GL + + ++
Sbjct: 129 RRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELR 183
Query: 860 DTGRTVVCTIHQ 871
G + + Q
Sbjct: 184 KEGGMTILLVEQ 195
|
Length = 237 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 8e-10
Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 16/179 (8%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLM-------DVLAGRKTRGYIT-GNITISGYPKN 740
L ++ +TAL+G +G GK+TL+ D++ G + G + I +
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76
Query: 741 QETFTRISGYCEQNDIHSPY-VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL-N 798
R G Q +P+ +++Y+++ Y RL + K + VEE ++ L +
Sbjct: 77 VVELRRRVGMVFQKP--NPFPMSIYDNIAYG--PRLHGIKDKKELDEIVEESLKKAALWD 132
Query: 799 PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN 857
++ L GLS Q++RL IA L P ++ +DEPTS LD A + ++
Sbjct: 133 EVKDRLHDSA--LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQE 189
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 9e-10
Identities = 55/206 (26%), Positives = 93/206 (45%), Gaps = 24/206 (11%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP-----KNQET 743
L G++ + G +TA++G G+GK+TL L G +G I G P K
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNG--ILKPSSGRILFDGKPIDYSRKGLMK 79
Query: 744 FTRISGYCEQNDIHSPY-VTVYESLLYSAW-LRL-SSEVNSKTREMFVEEVMELVELNPL 800
G Q+ + + +VY+ + + A L+L EV + V+ ++ + L
Sbjct: 80 LRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-----VDNALKRTGIEHL 134
Query: 801 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV- 859
+ P + LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ +
Sbjct: 135 KDK----P-THCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQK 189
Query: 860 DTGRTVVCTIHQPSIDIFEAF-DAGI 884
+ G T++ H IDI + D
Sbjct: 190 ELGLTIIIATH--DIDIVPLYCDNVF 213
|
Length = 283 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 2e-09
Identities = 55/213 (25%), Positives = 83/213 (38%), Gaps = 47/213 (22%)
Query: 15 SGKVTYNGHDMHEFVPQ---RTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVE 71
SG+V +G D+ P+ + AY+ Q +TV E LV
Sbjct: 56 SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYE-----------------LVL 98
Query: 72 LSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGIS 131
L R P + R +E I + L++L L+ AD V + +S
Sbjct: 99 LGRY-------P------HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-----LS 140
Query: 132 GGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPA 191
GG+R+RV L L +DE ++ LD + ++ L N T ++ L
Sbjct: 141 GGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDL- 199
Query: 192 PEVYNLF----DDIILVSDGQIVYQGPLEHVEQ 220
NL D +IL+ DG+IV QG E V
Sbjct: 200 ----NLAARYADHLILLKDGKIVAQGTPEEVLT 228
|
Length = 258 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 2e-09
Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 26/177 (14%)
Query: 679 RGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITIS 735
+ L+ VS G + ++G +G+GK+TL+ ++ R T G + ++
Sbjct: 12 GQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLT 71
Query: 736 GYPKNQ-ETFTRISGYCEQ--NDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVM 792
+ + + G Q N + S TV+E++ + L L+ V + + V
Sbjct: 72 ALSEAELRQLRQKIGMIFQHFNLLSSR--TVFENVAFP--LELAG-VPKAEIK---QRVA 123
Query: 793 ELVELNPLRQALVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
EL+EL VGL LS Q++R+ IA L NP I+ DE TS LD
Sbjct: 124 ELLEL-------VGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALD 173
|
Length = 339 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 44/186 (23%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRI 747
+L+GV+ +TALMG +GSGK+TL+ V N I YP+ R+
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-----------NRLIELYPE-----ARV 61
Query: 748 SG--YCEQNDIHS--------------------PYVTVYESLLYSAWLRLSSEVNSKTRE 785
SG Y + DI P ++++E++ L+L+ V SK +E
Sbjct: 62 SGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALG--LKLNRLVKSK-KE 118
Query: 786 MF--VEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 843
+ V +E +L + + P LS Q++RL IA L P ++ DEPT+ L
Sbjct: 119 LQERVRWALEKAQLWDEVKDRLDAPA-GKLSGGQQQRLCIARALAFQPEVLLADEPTANL 177
Query: 844 DARAAA 849
D A
Sbjct: 178 DPENTA 183
|
Length = 250 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 57/204 (27%), Positives = 91/204 (44%), Gaps = 35/204 (17%)
Query: 691 GVSGAFRPGVLTALMGVTGSGKTTLM-------DVLAGRKTRGYITGNITISGY----PK 739
V+ + G + AL+G +G GKTT + D+ G + +TG I + G P+
Sbjct: 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGAR----VTGRILLDGQDIYGPR 77
Query: 740 -NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN 798
+ R G Q P ++V+++++ A L+L+ + +ME+ E +
Sbjct: 78 VDPVAMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRD-------HLMEVAERS 128
Query: 799 PLRQAL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 851
AL + P GLS Q++RL IA L P I+ MDEPTS LD + A +
Sbjct: 129 LRGAALWDEVKDRLKTPA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARI 187
Query: 852 --MRTVRNTVDTGRTVVCTIHQPS 873
+ T V T V +HQ +
Sbjct: 188 EDLMTDLKKVTTIIIVTHNMHQAA 211
|
Length = 252 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (145), Expect = 2e-09
Identities = 59/217 (27%), Positives = 98/217 (45%), Gaps = 23/217 (10%)
Query: 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLA 720
+ F+++ Y+ R + D L + + G TAL+G TGSGK+TL+ L
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEV--------KKGSYTALIGHTGSGKSTLLQHLN 53
Query: 721 G--RKTRGYI-TGNITISGYPKNQET--FTRISGYCEQNDIHSPYVTVYESLLYS--AWL 773
G + T G + G+I +S K +E + G Q P ++E + A+
Sbjct: 54 GLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQ----FPESQLFEETVLKDVAFG 109
Query: 774 RLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSI 833
+ + + E E +E+V L + P LS Q +R+ IA L P +
Sbjct: 110 PQNFGIPKEKAEKIAAEKLEMVGLA--DEFWEKSP--FELSGGQMRRVAIAGILAMEPEV 165
Query: 834 IFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIH 870
+ +DEPT+GLD +A +M+ + +G+TVV H
Sbjct: 166 LVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTH 202
|
Length = 288 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 57/201 (28%), Positives = 88/201 (43%), Gaps = 17/201 (8%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFT 745
+L G++ F +T L+G G GK+TL L+G R +G + Y K
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 746 R--ISGYCEQNDIHSPYVTVYESLLYSAWLR-LSSEVNSKTREMFVEEVMELVELNPLRQ 802
R ++ + + Y + + +S LR L TR V+E + LV+ R
Sbjct: 76 RQQVATVFQDPEQQIFYTDIDSDIAFS--LRNLGVPEAEITRR--VDEALTLVDAQHFRH 131
Query: 803 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTG 862
+ LS Q+KR+ IA LV + +DEPT+GLD ++ +R V G
Sbjct: 132 Q-----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQG 186
Query: 863 RTVVCTIHQPSID-IFEAFDA 882
V+ + H ID I+E DA
Sbjct: 187 NHVIISSH--DIDLIYEISDA 205
|
Length = 271 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-09
Identities = 54/183 (29%), Positives = 83/183 (45%), Gaps = 30/183 (16%)
Query: 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP---K 739
D ++L+ VS PG A++G +GSGK+TL+ +L G +T +G++ G
Sbjct: 463 PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQDLAGL 520
Query: 740 NQETFTRISGYCEQN-DIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN 798
+ + R G QN + S +++E++ A L L +E E +
Sbjct: 521 DVQAVRRQLGVVLQNGRLMSG--SIFENIAGGAPLTL-------------DEAWEAARMA 565
Query: 799 PLRQALVGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 849
L + + +P G LS QR+RL IA LV P I+ DE TS LD R A
Sbjct: 566 GLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA 625
Query: 850 VVM 852
+V
Sbjct: 626 IVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 62/201 (30%), Positives = 86/201 (42%), Gaps = 23/201 (11%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTR 746
L VS + G A++G GSGK+TL +L G G IT+ G ++ET
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG----TITVGGMVLSEETVWD 78
Query: 747 IS---GYCEQN-DIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQ 802
+ G QN D TV + + + E RE VE V + + +
Sbjct: 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGL------ENIGVPREEMVERVDQALRQVGMED 132
Query: 803 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTG 862
L P + LS Q++R+ IA L P II +DE TS LD R V+ TVR +
Sbjct: 133 FLNREP--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQK 190
Query: 863 R-TVVCTIHQPSIDIFEAFDA 882
TV+ H D+ EA A
Sbjct: 191 GITVLSITH----DLDEAAQA 207
|
Length = 279 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 18/188 (9%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 748
L G+S + G TAL+G G+GK+TL+ L G G + + G N E +
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKWVR 78
Query: 749 ---GYCEQN-DIHSPYVTVYESLLYSAW-LRLS-SEVNSKTREMFVEEVMELVELNPLRQ 802
G Q+ D TV++ + + + L EV + VEE ++ V + R
Sbjct: 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERR-----VEEALKAVRMWDFRD 133
Query: 803 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTG 862
LS Q+KR+ IA L +P +I +DEP + LD R +M + + G
Sbjct: 134 K-----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQG 188
Query: 863 RTVVCTIH 870
+TV+ H
Sbjct: 189 KTVIVATH 196
|
Length = 274 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 3e-09
Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 29/180 (16%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGR--KTRGYIT-GNITISGYPKNQ--ET 743
LNG+S G ++G G+GK+TL++ +AG T G I + ++ +
Sbjct: 22 LNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANL 81
Query: 744 FTRI-----SGYCEQNDIHSPYVTVYESLLYSAWLR-----LSSEVNSKTREMFVEEVME 793
R+ +G P +T+ E+L A R LSS +N + R F E +
Sbjct: 82 LARVFQDPLAGTA-------PELTIEENLAL-AESRGKKRGLSSALNERRRSSFRERLAR 133
Query: 794 LVE-LNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVM 852
L L +GL LS QR+ L++ + + P I+ +DE T+ LD + A VM
Sbjct: 134 LGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVM 188
|
Length = 263 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 3e-09
Identities = 48/159 (30%), Positives = 71/159 (44%), Gaps = 18/159 (11%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGR-KTRGYITGNITISGYP-KNQETFTR 746
L GVS G +T ++G G GKTTL+ L G + G+I + G R
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKS---GSIRLDGEDITKLPPHER 72
Query: 747 IS---GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQA 803
Y Q P +TV E+LL R + + E+ EL P+ +
Sbjct: 73 ARAGIAYVPQGREIFPRLTVEENLLTGLAAL-------PRRSRKIPD--EIYELFPVLKE 123
Query: 804 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 842
++G G + LS Q+++L IA LV P ++ +DEPT G
Sbjct: 124 MLGRRGGD-LSGGQQQQLAIARALVTRPKLLLLDEPTEG 161
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-09
Identities = 48/201 (23%), Positives = 85/201 (42%), Gaps = 43/201 (21%)
Query: 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQET 743
+V + VS + + G + AL+G G+GK+TLM +L G + G I + G
Sbjct: 17 VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDS----GEIRVDGKE----- 67
Query: 744 FTRISGYCEQND--------IHS-----PYVTVYESL---LYSAWLRLSSEVNSKTREMF 787
RI D +H P +TV E++ L + L + R
Sbjct: 68 -VRIKS---PRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDR--RQARAR- 120
Query: 788 VEEVMEL--VELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 845
++E+ E + ++P A V LS +++R+ I L ++ +DEPT+ L
Sbjct: 121 IKELSERYGLPVDP--DAKVA-----DLSVGEQQRVEILKALYRGARLLILDEPTAVLTP 173
Query: 846 RAAAVVMRTVRNTVDTGRTVV 866
+ A + +R G+T++
Sbjct: 174 QEADELFEILRRLAAEGKTII 194
|
Length = 501 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 5e-09
Identities = 61/201 (30%), Positives = 92/201 (45%), Gaps = 31/201 (15%)
Query: 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY--ITGNITISGYPKNQ 741
D LVL VS PG +TAL+G +GSGK+T++ +L Y G + + G P
Sbjct: 26 DTLVL-QDVSFTLHPGEVTALVGPSGSGKSTVVALL----ENFYQPQGGQVLLDGKP--- 77
Query: 742 ETFTRISGYCEQNDIHSPYVTV-YESLLYSAWLRLSSEVNSKTREMFVEEVMELV----- 795
IS Y E +HS V E +L++ L+ + ++ E V E
Sbjct: 78 -----ISQY-EHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSF--ECVKEAAQKAHA 129
Query: 796 -----ELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAV 850
EL VG G + LS Q++R+ IA L+ NP ++ +DE TS LDA +
Sbjct: 130 HSFISELASGYDTEVGEKG-SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQ 188
Query: 851 VMRTVRNTVDTGRTVVCTIHQ 871
V + + + RTV+ H+
Sbjct: 189 VQQALYDW-PERRTVLVIAHR 208
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 5e-09
Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 27/168 (16%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY-ITGNITISG-----YPKNQ 741
LL V+ G + LMG +G GK+TL+ + G + TG + ++ P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 742 ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR 801
R G Q+ + P+++V ++LL++ L + + R +E R
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALE-------R 121
Query: 802 QALVGL----PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 845
L G P LS QR R+ + L+A P + +DEP S LD
Sbjct: 122 SGLDGAFHQDPAT--LSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 6e-09
Identities = 65/247 (26%), Positives = 101/247 (40%), Gaps = 36/247 (14%)
Query: 639 ETTIETDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRP 698
+ M LP +L+ + +T P K+ +L G+S A +
Sbjct: 313 NELLAELPAAAERMPLPAPQGALSVERLTA---APPGQKK--------PILKGISFALQA 361
Query: 699 GVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQ---ETFTRISGYCEQ 753
G ++G +GSGK+TL +L G T G ++ + G Q E R GY Q
Sbjct: 362 GEALGIIGPSGSGKSTLARLLVGIWPPTSG----SVRLDGADLRQWDREQLGRHIGYLPQ 417
Query: 754 NDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVE-----EVMELVELNPL-RQALVGL 807
D+ T+ E++ R E + E +E V EL+ P +G
Sbjct: 418 -DVELFDGTIAENIA-----RFGEEADP---EKVIEAARLAGVHELILRLPQGYDTRIG- 467
Query: 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVC 867
G LS QR+R+ +A L +P ++ +DEP S LD+ A + + G TVV
Sbjct: 468 EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVV 527
Query: 868 TIHQPSI 874
H+PS
Sbjct: 528 IAHRPSA 534
|
Length = 580 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 6e-09
Identities = 59/215 (27%), Positives = 94/215 (43%), Gaps = 40/215 (18%)
Query: 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG 721
FD++++S D R+GV D VS +PG A++G TG+GK+TL+++L
Sbjct: 336 EFDDVSFSYDN----SRQGVED--------VSFEAKPGQTVAIVGPTGAGKSTLINLL-- 381
Query: 722 RKTRGY--ITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLY----SAWLRL 775
R + +G I I G T I + + V ++ L+ +R+
Sbjct: 382 --QRVFDPQSGRILIDG--------TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRV 431
Query: 776 SSEVNSKTREMFVE-----EVMELVELNPLR-QALVGLPGVNGLSTEQRKRLTIAVELVA 829
T E + + +E P +VG G LS +R+RL IA L+
Sbjct: 432 GRP--DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERG-RQLSGGERQRLAIARALLK 488
Query: 830 NPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRT 864
+P I+ +DE TS LD A V + + + GRT
Sbjct: 489 DPPILILDEATSALDVETEAKVKAAL-DELMKGRT 522
|
Length = 588 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 8e-09
Identities = 53/194 (27%), Positives = 81/194 (41%), Gaps = 25/194 (12%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRI 747
+L+GV + R G L L+G G+GKTTL+ + G T G + ++G +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDDVEALSARAA 75
Query: 748 SGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVN-----------SKTREMFVEEVMELVE 796
S + P T SL + +R E+ ++T VE ME
Sbjct: 76 S----RRVASVPQDT---SLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTG 128
Query: 797 LNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVR 856
+ P V LS +R+R+ +A L ++ +DEPT+ LD + VR
Sbjct: 129 VA----QFADRP-VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVR 183
Query: 857 NTVDTGRTVVCTIH 870
VD G+T V IH
Sbjct: 184 RLVDDGKTAVAAIH 197
|
Length = 402 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 57/223 (25%), Positives = 101/223 (45%), Gaps = 32/223 (14%)
Query: 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVL 719
++ FD ++Y+ + + +HD V+ F G A++G TGSGK+TL+ +
Sbjct: 2 TIRFDNVSYTYQKGTPYEHQAIHD--------VNTEFEQGKYYAIVGQTGSGKSTLIQNI 53
Query: 720 AG--RKTRGYIT-GNITISGYPKNQETFTRISGYCEQNDIHSPYVTVY---ESLLYSAWL 773
+ T G +T +ITI+ K++ + V+ ES L+ +
Sbjct: 54 NALLKPTTGTVTVDDITITHKTKDKYIRP----------VRKRIGMVFQFPESQLFEDTV 103
Query: 774 RLSSEVNSKTREMFVEEVME-----LVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELV 828
K +M ++EV L++L R + P +S Q +++ I L
Sbjct: 104 EREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSP--FQMSGGQMRKIAIVSILA 161
Query: 829 ANPSIIFMDEPTSGLDARAAAVVMRTVRN-TVDTGRTVVCTIH 870
NP II +DEPT+GLD ++ VMR +++ D +T++ H
Sbjct: 162 MNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSH 204
|
Length = 286 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 1e-08
Identities = 47/185 (25%), Positives = 75/185 (40%), Gaps = 30/185 (16%)
Query: 698 PGVLTALMGVTGSGKTTLMDVLAGR-KTRGYITGNITISGY-P-KNQETFTRISGYCEQN 754
G + +G G+GK+T + +L G G + ++G P + +E + R G
Sbjct: 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTS---GKVRVNGKDPFRRREEYLRSIGLV--- 102
Query: 755 DIHSPYVTVYESLLYSAWLRLSSEVNSKTREM----FVEEVMELVEL----NPLRQALVG 806
+ L + S EV E+ F E + L E+ L+
Sbjct: 103 ------MGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWP--- 153
Query: 807 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN-TVDTGRTV 865
V LS QR R +A L+ P ++F+DEPT GLD A A + ++ + TV
Sbjct: 154 ---VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATV 210
Query: 866 VCTIH 870
+ T H
Sbjct: 211 LLTTH 215
|
Length = 325 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 55/189 (29%), Positives = 91/189 (48%), Gaps = 18/189 (9%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFT 745
+N VS G + L+G G+GKTT ++ G R G I + I+ P ++
Sbjct: 20 VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79
Query: 746 RISGYCEQNDIHSPY--VTVYESLLYSAWLRLSSEVNSKTRE--MFVEEVMELVELNPLR 801
I GY Q S + +TV ++++ A L + E + K E ++ ++E + LR
Sbjct: 80 GI-GYLPQE--ASIFRKLTVEDNIM--AVLEIR-EKDLKKAERKEELDALLEEFHITHLR 133
Query: 802 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT 861
+ + LS +R+R+ IA L ANP I +DEP +G+D A + R +++ D
Sbjct: 134 DS----KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDR 188
Query: 862 GRTVVCTIH 870
G V+ T H
Sbjct: 189 GIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 2e-08
Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 34/201 (16%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQ---ET 743
L+ VS RPG A++G GSGK+TL+ +L G + T G ++ + G Q
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG----SVLLDGVDIRQIDPAD 536
Query: 744 FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL------ 797
R GY Q D Y T+ +++ A + + EE++ EL
Sbjct: 537 LRRNIGYVPQ-DPRLFYGTLRDNIALGA--PYADD----------EEILRAAELAGVTEF 583
Query: 798 -NPLRQAL---VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMR 853
L +G G LS QR+ + +A L+ +P I+ +DEPTS +D R+
Sbjct: 584 VRRHPDGLDMQIGERGR-SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKD 642
Query: 854 TVRNTVDTGRTVVCTIHQPSI 874
++ + G+T+V H+ S+
Sbjct: 643 RLKRWL-AGKTLVLVTHRTSL 662
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 20/195 (10%)
Query: 685 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQ 741
+L G+ + G + ++G +GSGK+TL+ + G I + ++ KN
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71
Query: 742 ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR 801
+ G Q P++TV E++ + +V ++ E +EL+E
Sbjct: 72 NELRQKVGMVFQQFNLFPHLTVLENITLA--PI---KVKGMSKAEAEERALELLEK---- 122
Query: 802 QALVGLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVR 856
VGL LS Q++R+ IA L NP ++ DEPTS LD V+ ++
Sbjct: 123 ---VGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMK 179
Query: 857 NTVDTGRTVVCTIHQ 871
+ + G T+V H+
Sbjct: 180 DLAEEGMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 19/190 (10%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTR 746
L G+S + G + ++G +GSGK+TL+ L G G IT + G K+ R
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRR 77
Query: 747 ISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVG 806
G Q P++TV E++ + +V ++ E+ +EL+E VG
Sbjct: 78 KVGMVFQQFNLFPHLTVLENVTLA--PV---KVKKLSKAEAREKALELLEK-------VG 125
Query: 807 LPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT 861
L LS Q++R+ IA L +P ++ DEPTS LD V+ +++ +
Sbjct: 126 LADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 185
Query: 862 GRTVVCTIHQ 871
G T++ H+
Sbjct: 186 GMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 2e-08
Identities = 48/185 (25%), Positives = 78/185 (42%), Gaps = 35/185 (18%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFT 745
L+ S +PG AL+G +GSGK+T+ ++AG + G I G P+ +
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGIPREEIPRE 549
Query: 746 RISG---YCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQ 802
++ +Q DI TV ++L + W + +++ + +
Sbjct: 550 VLANSVAMVDQ-DIFLFEGTVRDNL--TLWDPTIPD----------ADLVRACKDAAIHD 596
Query: 803 ALVGLPGVNGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 851
+ PG G E QR+RL IA LV NPSI+ +DE TS LD ++
Sbjct: 597 VITSRPG--GYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKII 654
Query: 852 MRTVR 856
+R
Sbjct: 655 DDNLR 659
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 30/178 (16%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLM-------DVLAGRKTRGYITGNITISGYPKNQ 741
L ++ + +TAL+G +G GK+TL+ D++ G + ITG+I +G
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR----ITGDILYNGENIMD 77
Query: 742 ET-----FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE 796
R G Q P ++YE++ Y R+ E N KT + VE+ ++
Sbjct: 78 SGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGP--RIHGEKNKKTLDTIVEKSLKGAA 134
Query: 797 L-----NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 849
L + L + + L G Q++RL IA L NP +I MDEP S LD A A
Sbjct: 135 LWDEVKDRLHDSALSLSG------GQQQRLCIARTLAVNPEVILMDEPCSALDPIATA 186
|
Length = 253 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 2e-08
Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 13/161 (8%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQ--ET 743
+N S G + +MG++GSGK+TL+ +L TRG I I+ + E
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 744 FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQA 803
+ Q+ P+ TV E++ + L + V RE E +ELV L
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFG--LEVQG-VPKAEREERALEALELVGLEGYADK 160
Query: 804 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
N LS ++R+ +A L +P I+ MDE S LD
Sbjct: 161 YP-----NELSGGMQQRVGLARALANDPDILLMDEAFSALD 196
|
Length = 386 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 3e-08
Identities = 41/146 (28%), Positives = 69/146 (47%), Gaps = 15/146 (10%)
Query: 704 LMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFTRISGYCEQNDIHSPY 760
L+G +G GKTTL+ +LAG + G I ++ P + R Q+ P+
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHL----RHINMVFQSYALFPH 56
Query: 761 VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 820
+TV E++ + L++ + + V E + LV+L + LS Q++R
Sbjct: 57 MTVEENVAFG--LKMRKVPRA-EIKPRVLEALRLVQLEEFADR-----KPHQLSGGQQQR 108
Query: 821 LTIAVELVANPSIIFMDEPTSGLDAR 846
+ +A LV P I+ +DEP S LD +
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKK 134
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 21/201 (10%)
Query: 680 GVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGY-- 737
G K+ L VS + G + ++G +G+GK+TL+ + G + +G++ + G
Sbjct: 12 GDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDL 69
Query: 738 ----PKNQETFTRISGYCEQ--NDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEV 791
K R G Q N + S TV+E++ L ++ V E V E+
Sbjct: 70 TLLSGKELRKARRRIGMIFQHFNLLSSR--TVFENVALP--LEIAG-VPKAEIEERVLEL 124
Query: 792 MELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 851
+ELV L A P LS Q++R+ IA L NP ++ DE TS LD +
Sbjct: 125 LELVGLEDKADAY---PA--QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSI 179
Query: 852 MRTVRNT-VDTGRTVVCTIHQ 871
+ +R+ + G T+V H+
Sbjct: 180 LALLRDINRELGLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 4e-08
Identities = 55/168 (32%), Positives = 83/168 (49%), Gaps = 24/168 (14%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY--ITGNITISGYPKNQETFTR 746
L G+S + G AL+G TG GK+TL+ +L TR + G I ++G P
Sbjct: 356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLL----TRAWDPQQGEILLNGQP-------- 403
Query: 747 ISGYCEQNDIHSPYVTVYESL-LYSAWLR--LSSEVNSKTREMFVEEVMELVELNPLRQA 803
I+ Y E + V + + L+SA LR L + + E +E V++ V L L +
Sbjct: 404 IADYSEA-ALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIE-VLQQVGLEKLLED 461
Query: 804 LVGLP---GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 846
GL G G LS +++RL IA L+ + ++ +DEPT GLDA
Sbjct: 462 DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAE 509
|
Length = 574 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 5e-08
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 675 EMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITI 734
E++ L+ VS + G + AL+G GSGK+TL+ +AG G I I
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTS--GEILI 58
Query: 735 SGYPKNQ---ETFTRISGYCEQ 753
G + E R GY Q
Sbjct: 59 DGKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 5e-08
Identities = 47/176 (26%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 703 ALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP---KNQETFTRISGYCEQN---DI 756
A++G G+GK+TL G +G++ I G P +N + G QN I
Sbjct: 34 AVIGPNGAGKSTLFRHFNGILKPT--SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI 91
Query: 757 HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 816
SP TV + + + ++ ++ +T V + ++ L LR + P + LS
Sbjct: 92 FSP--TVEQDIAFGP---INLGLDEETVAHRVSSALHMLGLEELRDRV---P--HHLSGG 141
Query: 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQ 871
++KR+ IA + P ++ +DEPT+GLD + ++ + + +T G TV+ + HQ
Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ 197
|
Length = 277 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 5e-08
Identities = 54/224 (24%), Positives = 89/224 (39%), Gaps = 43/224 (19%)
Query: 698 PGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQ-NDI 756
G L L+G G+GKTTL+ + G G + ++G + R GY Q ++
Sbjct: 5 KGELLGLLGPNGAGKTTLLRAILGLIPPA--KGTVKVAGASPGKGW--RHIGYVPQRHEF 60
Query: 757 HSPY-VTVYESLLYS-----AWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGV 810
+ ++V +++ WLR + V + + V L L VG
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAA----VRDALRRVGLTELADRPVG---- 112
Query: 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIH 870
LS QR+R+ +A L PS++ +DEP +GLD ++ G ++ T H
Sbjct: 113 -ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTH 171
Query: 871 QPSIDIFEAFDA--------------GIPGVSKIRDGYNPATWM 900
D+ +A G P +++D PA WM
Sbjct: 172 ----DLAQAMATCDRVVLLNGRVIADGTP--QQLQD---PAPWM 206
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 5e-08
Identities = 36/192 (18%), Positives = 65/192 (33%), Gaps = 5/192 (2%)
Query: 986 IFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYRE 1045
I L+FG G + + F+ V + VL L R +
Sbjct: 60 IIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSFSSALFREREFGT 119
Query: 1046 KGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMI---GFEWTAAKFFWFLFFMFFS 1102
+ SP++ F + +PY+ V + L++ + G + L +
Sbjct: 120 LERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLG-SLLLLLLLLLLL 178
Query: 1103 LLYFTFFGMMLVAWTPNH-HIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIA 1161
LL G++L + + AS V L +SG P +P W + + NP+
Sbjct: 179 LLATVALGLLLSTFAKSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLT 238
Query: 1162 WTLYGFFASQFG 1173
+ + G
Sbjct: 239 YAIDALRYVYLG 250
|
Length = 286 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 6e-08
Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 21/209 (10%)
Query: 680 GVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTT----LMDVL--AGRKTRGYIT-GNI 732
++ + VS PG + ++G +GSGK+T LM +L GR T G +
Sbjct: 16 ATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75
Query: 733 TISGYPKNQET---FTRISGYCEQNDIHS--PYVTVYESLLYSAWLRLSSEVNSKTREMF 787
+ G + + RI Q+ + S P +T+ + + LRL + +
Sbjct: 76 DLLGLSEREMRKLRGKRI-AMIFQDPMTSLNPVMTIGDQI--REALRLHGKGSRAEARKR 132
Query: 788 VEEVMELVEL-NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 846
E++E V L +P R+ P + LS R+R+ IA+ L P ++ DEPT+ LD
Sbjct: 133 AVELLEQVGLPDPERRDR--YP--HQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVT 188
Query: 847 AAAVVMRTVRN-TVDTGRTVVCTIHQPSI 874
A ++ +++ + G V+ H +
Sbjct: 189 TQAQILDLLKDLQRELGMAVLFITHDLGV 217
|
Length = 539 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 6e-08
Identities = 58/233 (24%), Positives = 91/233 (39%), Gaps = 53/233 (22%)
Query: 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVL 719
S+ F+ + Y M+++G L+ +S G AL+G TGSGK+TLM
Sbjct: 2 SIKFENVDYIYSPGTPMEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQHF 53
Query: 720 AGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEV 779
+G ITI+GY ET + + V++ E
Sbjct: 54 NALLKPS--SGTITIAGYHITPETGNK-----NLKKLRKKVSLVFQF----------PEA 96
Query: 780 NSKTREMFVEEVMELVELNPLR----------QALVGLPGVNGLSTE------------Q 817
++F V++ VE P +AL L V GLS + Q
Sbjct: 97 -----QLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKV-GLSEDLISKSPFELSGGQ 150
Query: 818 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIH 870
+R+ IA + P I+ +DEP +GLD +M+ ++ G TV+ H
Sbjct: 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTH 203
|
Length = 287 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 7e-08
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 129 GISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLL 188
+SGG+++RV L L +DE + LD + ++ L Q LN + +
Sbjct: 131 QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIF-VT 189
Query: 189 QPAPEVYNLFDDIILVSDGQIVYQG 213
E L D I+++ DG++ Y G
Sbjct: 190 HDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 8e-08
Identities = 47/181 (25%), Positives = 89/181 (49%), Gaps = 19/181 (10%)
Query: 696 FRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG--YPKNQETFTRISGYCEQ 753
F +TA +G G+GKTT + +L G +G + + G N + + G C Q
Sbjct: 953 FYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGGKDIETNLDAVRQSLGMCPQ 1010
Query: 754 NDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGL 813
++I ++TV E +L+ A L+ S + ++ +E ++E L+ R L
Sbjct: 1011 HNILFHHLTVAEHILFYAQLKGRSWEEA---QLEMEAMLEDTGLHHKRNE-----EAQDL 1062
Query: 814 STEQRKRLTIAVELVANPSIIFMDEPTSGLDA---RAAAVVMRTVRNTVDTGRTVVCTIH 870
S +++L++A+ V + ++ +DEPTSG+D R+ ++ R +GRT++ + H
Sbjct: 1063 SGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR----SGRTIIMSTH 1118
Query: 871 Q 871
Sbjct: 1119 H 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 8e-08
Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 23/166 (13%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRG--YITG-NITISGYPKNQET 743
+N A G + +MG++GSGK+T + +L T G +I G NI + +E
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREV 68
Query: 744 FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQA 803
+ G Q P++T+ ++ L + R+ E+ +EL++L
Sbjct: 69 RRKKIGMVFQQFALFPHMTILQNTSLGPEL---LGWPEQERK---EKALELLKL------ 116
Query: 804 LVGLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
VGL + LS ++R+ +A L A P I+ MDE S LD
Sbjct: 117 -VGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALD 161
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 8e-08
Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 10/157 (6%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 748
L GV+ + G +L+G +G GK+TL+++++G G + + G + R+
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTS--GGVILEGKQITEPGPDRMV 58
Query: 749 GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLP 808
+ QN P++TV E+ + A R+ +++ R VEE + LV L +A P
Sbjct: 59 VF--QNYSLLPWLTVREN-IALAVDRVLPDLSKSERRAIVEEHIALVG---LTEAADKRP 112
Query: 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 845
G LS ++R+ IA L P ++ +DEP LDA
Sbjct: 113 G--QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDA 147
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 43/200 (21%), Positives = 77/200 (38%), Gaps = 44/200 (22%)
Query: 697 RPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN-------------QET 743
R G + L+G G GK+T + +LAG+ + N+ P + Q
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGK-----LKPNLGKFDDPPDWDEILDEFRGSELQNY 78
Query: 744 FTRISGYCEQNDIHSP-YVTVYESLLYSAWLRLSSEVNSKTREM--------FVEEVMEL 794
FT++ + I P YV + V K E+ ++E+++
Sbjct: 79 FTKLLEG-DVKVIVKPQYVD-----------LIPKAVKGKVGELLKKKDERGKLDELVDQ 126
Query: 795 VELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRT 854
+EL + ++ LS + +R+ IA L + F DEP+S LD + R
Sbjct: 127 LELRHVLDR-----NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARL 181
Query: 855 VRNTVDTGRTVVCTIHQPSI 874
+R + V+ H ++
Sbjct: 182 IRELAEDDNYVLVVEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 1e-07
Identities = 44/186 (23%), Positives = 80/186 (43%), Gaps = 17/186 (9%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFT 745
LL +S G L L G G+GKTTL+ ++AG +G I K+ T+
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEI--LFERQSIKKDLCTYQ 73
Query: 746 RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALV 805
+ + +PY+T+ E+ LY +++ + + E+ L L L
Sbjct: 74 KQLCFVGHRSGINPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLEHLIDYPC 125
Query: 806 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTV 865
GL LS+ Q++++ + ++ + +DEP LD + ++ ++ G V
Sbjct: 126 GL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAV 180
Query: 866 VCTIHQ 871
+ T HQ
Sbjct: 181 LLTSHQ 186
|
Length = 200 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 1e-07
Identities = 46/195 (23%), Positives = 70/195 (35%), Gaps = 42/195 (21%)
Query: 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQE 742
K +L GV+ + G + ALMG GSGK+TL + G G I G
Sbjct: 11 GGKEIL-KGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG------ 63
Query: 743 TFTRISGYCEQNDIHSPYVTVYESL---LYSAWLRLSSEVNSKTREMFVEEVMELVELNP 799
DI + E ++ A+ E+ F+ V E
Sbjct: 64 -----------EDITD--LPPEERARLGIFLAFQY-PPEIPGVKNADFLRYVNE------ 103
Query: 800 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV 859
G S ++KR I L+ P + +DEP SGLD A +V +
Sbjct: 104 ------------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLR 151
Query: 860 DTGRTVVCTIHQPSI 874
+ G++V+ H +
Sbjct: 152 EEGKSVLIITHYQRL 166
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 2e-07
Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 30/173 (17%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLM-------DVLAGRKTRGYITGNITISG---YP 738
L G+ F +TAL+G +G GK+T + D++ G ITGN+++ G Y
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVT----ITGNVSLRGQNIYA 76
Query: 739 KNQET--FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE 796
N++ + G Q P+ ++YE+++Y LRL+ + + VE ++
Sbjct: 77 PNEDVVQLRKQVGMVFQQPNPFPF-SIYENVIYG--LRLAGVKDKAVLDEAVETSLKQAA 133
Query: 797 L-----NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
+ + L ++ + L G Q++R+ IA L P +I +DEPTS LD
Sbjct: 134 IWDEVKDHLHESALSLSG------GQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 51/158 (32%), Positives = 74/158 (46%), Gaps = 19/158 (12%)
Query: 701 LTALMGVTGSGKTTLM-------DVLAGRKTRGYITGNITISG---YPKNQETFTRIS-G 749
+TAL+G +G GK+TL+ D++ G K ITG +T+ G Y RI G
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDGEDIYGNIDVADLRIKVG 86
Query: 750 YCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPG 809
Q P +++YE++ Y LR + K + VE + L + +
Sbjct: 87 MVFQKPNPFP-MSIYENVAYG--LRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHA 143
Query: 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 847
GLS Q++RL IA + P +I MDEPTS LD A
Sbjct: 144 F-GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 44/197 (22%), Positives = 83/197 (42%), Gaps = 42/197 (21%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFT 745
L ++ G L A++G GSGK++L+ L G K G ++ +I+
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIA---------- 69
Query: 746 RISGYCEQNDIHSPYV---TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQ 802
Y Q P++ T+ E++L+ + E E+V++ L P +
Sbjct: 70 ----YVSQ----EPWIQNGTIRENILF------GKPFD----EERYEKVIKACALEPDLE 111
Query: 803 AL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTV 855
L +G G+N LS Q++R+++A + ++ I +D+P S +DA +
Sbjct: 112 ILPDGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENC 170
Query: 856 -RNTVDTGRTVVCTIHQ 871
+ +T + HQ
Sbjct: 171 ILGLLLNNKTRILVTHQ 187
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 21/166 (12%)
Query: 692 VSGAFRPGVLTALMGVTGSGKTTLM-------DVLAGRKTRGYITGNITISG---YPKNQ 741
V+ P +TA +G +G GK+T++ +V+ G + G + + G Y
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPG----ARVEGEVLLDGEDLYGPGV 78
Query: 742 ETFT--RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL-N 798
+ R G Q P +++ ++++ A L+L+ N K + VE+ + L N
Sbjct: 79 DPVAVRRTIGMVFQRPNPFPTMSIRDNVV--AGLKLNGVRNKKDLDELVEKSLRGANLWN 136
Query: 799 PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
++ L PG GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 137 EVKDRL-DKPG-GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-07
Identities = 62/236 (26%), Positives = 95/236 (40%), Gaps = 56/236 (23%)
Query: 663 FDEITYSVDMPQEMKRRGVHDDKLVLLNGVSG-------AFRPGVLTALMGVTGSGKTTL 715
FD I+ V++P+E++ VH GV+G RPG + ++G G GK+T
Sbjct: 64 FDAISI-VNLPEELEEEVVHR------YGVNGFKLYRLPTPRPGKVVGILGPNGIGKSTA 116
Query: 716 MDVLAGRKTRGYITGNI-TISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLR 774
+ +LAG + N+ P E R G QN Y LY LR
Sbjct: 117 LKILAGE-----LKPNLGRYEDPPSWDEVIKRFRGTELQN---------YFKKLYEGELR 162
Query: 775 LSSE----------VNSKTREM--------FVEEVMELVELNPL--RQALVGLPGVNGLS 814
+ V K E+ +EV+E + L + R V+ LS
Sbjct: 163 AVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRD-------VSELS 215
Query: 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIH 870
+ +R+ IA L+ + + F DEP+S LD R R +R + G+ V+ H
Sbjct: 216 GGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 3e-07
Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 30/185 (16%)
Query: 674 QEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTT----LMDVLAGRKTRGYIT 729
+ + +R V D V++ +S RPG L+G +GSGK+T L+ ++ +
Sbjct: 289 KGILKRTV--DHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ------- 339
Query: 730 GNITISGYPKNQETFTRISGYCEQ--------NDIHSPYVTVYESLLYSAWLRL-SSEVN 780
G I G P + ++ + N +P + V + + LR+ ++
Sbjct: 340 GEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQ--IIEEGLRVHQPTLS 397
Query: 781 SKTREMFVEEVMELVELNP-LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 839
+ RE V VME V L+P R P S QR+R+ IA L+ PS+I +DEP
Sbjct: 398 AAQREQQVIAVMEEVGLDPETRHRY---PA--EFSGGQRQRIAIARALILKPSLIILDEP 452
Query: 840 TSGLD 844
TS LD
Sbjct: 453 TSSLD 457
|
Length = 529 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 3e-07
Identities = 53/224 (23%), Positives = 93/224 (41%), Gaps = 34/224 (15%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 748
L+ VS R G + +L G G+GK+TLM VL+G G G I G + I
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL---QASNIR 77
Query: 749 GYCEQND---IHS-----PYVTVYESLLYSAWLRLSSEVNSKTR----EMFVE--EVMEL 794
E+ IH ++V E++ L +E+ M++ +++
Sbjct: 78 D-TERAGIAIIHQELALVKELSVLENIF------LGNEITPGGIMDYDAMYLRAQKLLAQ 130
Query: 795 VELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRT 854
++L+ P V L Q++ + IA L ++ +DEPT+ L AV++
Sbjct: 131 LKLD----INPATP-VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDI 185
Query: 855 VRNTVDTGRTVVCTIHQPSIDIFEAFDAGIPGVSKIRDGYNPAT 898
+R+ G + H+ + ++ D + IRDG + T
Sbjct: 186 IRDLKAHGIACIYISHKLN-EVKAISDT----ICVIRDGRHIGT 224
|
Length = 506 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-07
Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 20/166 (12%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYP------KN 740
LN VS + + G AL+G +G GK+TL +L G ++G N++ G P
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQG----NVSWRGEPLAKLNRAQ 83
Query: 741 QETFTRISGYCEQNDIHS--PYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN 798
++ F R Q+ I + P TV E + LR ++ R E++ V+L+
Sbjct: 84 RKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVDLD 141
Query: 799 PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
L P LS Q +R+ +A L P ++ +DE S LD
Sbjct: 142 D--SVLDKRPP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 3e-07
Identities = 51/211 (24%), Positives = 99/211 (46%), Gaps = 28/211 (13%)
Query: 677 KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVL--AGRKTRGYIT----- 729
KR G H+ +L GVS G + +++G +GSGK+T + + + + G I
Sbjct: 13 KRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQT 68
Query: 730 --------GNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS-SEVN 780
G + ++ + + TR++ + ++ S ++TV E+++ + L S+
Sbjct: 69 INLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWS-HMTVLENVMEAPIQVLGLSKQE 127
Query: 781 SKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 840
++ R + + + E +A P LS Q++R++IA L P ++ DEPT
Sbjct: 128 ARERAVKYLAKVGIDE-----RAQGKYP--VHLSGGQQQRVSIARALAMEPEVLLFDEPT 180
Query: 841 SGLDARAAAVVMRTVRNTVDTGRTVVCTIHQ 871
S LD V+R ++ + G+T+V H+
Sbjct: 181 SALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 3e-07
Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 23/168 (13%)
Query: 687 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI---TGNITISGYPKNQET 743
V +N VS R G + +MG++GSGK+TL+ R I +G + I G +
Sbjct: 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLL-----RCINRLIEPTSGKVLIDGQDIAAMS 92
Query: 744 FTRIS-------GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE 796
+ Q+ P+ TV E++ + ++ V RE E +ELV
Sbjct: 93 RKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVG 149
Query: 797 LNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
L + LS ++R+ +A L +P I+ MDE S LD
Sbjct: 150 LEGWEHKYP-----DELSGGMQQRVGLARALAVDPDILLMDEAFSALD 192
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 3e-07
Identities = 53/202 (26%), Positives = 81/202 (40%), Gaps = 38/202 (18%)
Query: 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLA 720
L +++ + RR V D L ++G+S R G L+G +GSGK+TL
Sbjct: 277 LEVEDLRVWFPIKGGFLRRTV--DHLRAVDGISLTLRRGQTLGLVGESGSGKSTL----- 329
Query: 721 GRKTRGYI--TGNITISGYPKNQETFTRISGYCEQ------NDIH----------SPYVT 762
G I G I G I G + + SP +T
Sbjct: 330 GLALLRLIPSQGEIRFDG--------QDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMT 381
Query: 763 VYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLT 822
V ++ ++++ R+ V E +E V L+P P + S QR+R+
Sbjct: 382 V-GQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDP--ATRNRYP--HEFSGGQRQRIA 436
Query: 823 IAVELVANPSIIFMDEPTSGLD 844
IA L+ P +I +DEPTS LD
Sbjct: 437 IARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 4e-07
Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 28/169 (16%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI--TGNITISGYPKNQETFTR 746
L+ +S PG AL+G +GSGK+TL++++ R Y +G I + G+ T
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLI----PRFYEPDSGQILLDGHDLADYTLAS 403
Query: 747 ISGYCEQ--NDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL 804
+ D+ T+ ++ Y T + E+ + + +
Sbjct: 404 LRRQVALVSQDVVLFNDTIANNIAYGR-----------TEQADRAEIERALAAAYAQDFV 452
Query: 805 VGLP-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
LP G NG LS QR+RL IA L+ + I+ +DE TS LD
Sbjct: 453 DKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALD 501
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 4e-07
Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 30/180 (16%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLM-------DVLAGRKTRGYITGNITISG---YP 738
L G+S + A +G +G GK+T + D++ + + G I I G Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRNIYD 74
Query: 739 KNQET--FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE 796
K + + G Q P +++E++ Y LR++ ++ VEE ++
Sbjct: 75 KGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYG--LRVNGVKDNAFIRQRVEETLKGAA 131
Query: 797 L-----NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 851
L + L+++ L G Q++RL IA + +PS++ MDEP S LD + A V
Sbjct: 132 LWDEVKDKLKESAFALSG------GQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV 185
|
Length = 250 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 16/177 (9%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP------KNQ 741
+L VS + G L+G +G GK+TL +L G + G ++ G K +
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQDLYQLDRKQR 83
Query: 742 ETFTRISGYCEQNDIHS--PYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP 799
F R Q+ + P +TV + + LR + ++ ++ + E++++V L
Sbjct: 84 RAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMVGLRS 141
Query: 800 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVR 856
+ LP LS Q +R+ IA L P +I +DE S LD AV++ +R
Sbjct: 142 --EDADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 45/176 (25%), Positives = 82/176 (46%), Gaps = 14/176 (7%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTT----LMDVLAGRKTRGYITGNITISGYPKNQET 743
L+ ++ + + G + AL+G +GSGK+ ++ +L T+ +G I + G P +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQ--TSGEILLDGRPLLPLS 58
Query: 744 F-TRISGYCEQNDIHS--PYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 800
R QN + P T+ + + LR +++ + R + +E +E V L
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIET--LRSLGKLSKQARALILE-ALEAVGLPDP 115
Query: 801 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVR 856
+ L P LS +R+ IA+ L+ P + DEPT+ LD A V++ +R
Sbjct: 116 EEVLKKYP--FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLR 169
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 6e-07
Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 16/179 (8%)
Query: 699 GVLTALMGVTGSGKTTLMDVLAGRKT--RGYITGN-ITISGYPKNQETFTRISGYCEQND 755
G + A+MG +G+GK+TL++++AG G I N + +G Q + + + E N
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSML--FQENNL 81
Query: 756 IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815
++TV +++ L ++N++ +E V + + V + L LP LS
Sbjct: 82 F--AHLTVRQNI--GLGLHPGLKLNAEQQEK-VVDAAQQVGIADY---LDRLP--EQLSG 131
Query: 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPS 873
QR+R+ +A LV I+ +DEP S LD ++ V+ RT++ H S
Sbjct: 132 GQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS 190
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (124), Expect = 6e-07
Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 13/189 (6%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVL--AGRKTRGY-ITGNITISGYP----KN 740
+L+ VS F +T+LMG TGSGKTT + L K GY +G++ + G ++
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 741 QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKT-REMFVEEVMELVELNP 799
F R G Q P +++ +++L A +R V K R + + E+ +
Sbjct: 96 VLEFRRRVGMLFQRPNPFP-MSIMDNVL--AGVRAHKLVPRKEFRGVAQARLTEVGLWDA 152
Query: 800 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV 859
++ L P LS Q++ L +A L NP ++ +DEPTS LD + +R+
Sbjct: 153 VKDRLSDSP--FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA 210
Query: 860 DTGRTVVCT 868
D ++ T
Sbjct: 211 DRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 7e-07
Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 20/185 (10%)
Query: 695 AFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTR--ISGYCE 752
G + A++G +G+GK+TL++++AG +T +G I I+G +S +
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQ 78
Query: 753 QNDIHSPYVTVYES--LLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGV 810
+N++ + ++TV ++ L S L+L++E K VE V L L LPG
Sbjct: 79 ENNLFA-HLTVAQNIGLGLSPGLKLNAEQREK-----VEAAAAQVGLAGF---LKRLPGE 129
Query: 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV--DTGRTVVCT 868
LS QR+R+ +A LV I+ +DEP S LD A M + + + + T++
Sbjct: 130 --LSGGQRQRVALARCLVREQPILLLDEPFSALDP-ALRAEMLALVSQLCDERKMTLLMV 186
Query: 869 IHQPS 873
H P
Sbjct: 187 THHPE 191
|
Length = 231 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 8e-07
Identities = 60/221 (27%), Positives = 87/221 (39%), Gaps = 75/221 (33%)
Query: 672 MPQEMKRRGVH---DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLM-------DVLAG 721
+M+ R V +K L V +TA +G +G GK+T + D + G
Sbjct: 16 TEIKMRARDVSVFYGEKQAL-FDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDG 74
Query: 722 RKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYV-------------------- 761
+ +TG IT+ G DI+ P +
Sbjct: 75 CR----VTGKITLDG-----------------EDIYDPRLDVVELRARVGMVFQKPNPFP 113
Query: 762 -TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGL----------PGV 810
++YE++ Y R+ SK E+ E+VE LR+A GL PG
Sbjct: 114 KSIYENVAYGP--RIHGLARSKA------ELDEIVE-TSLRKA--GLWEEVKDRLHEPG- 161
Query: 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 851
GLS Q++RL IA + +P +I MDEP S LD A A V
Sbjct: 162 TGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKV 202
|
Length = 267 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 9e-07
Identities = 27/173 (15%), Positives = 59/173 (34%), Gaps = 4/173 (2%)
Query: 1001 TKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQ 1060
+ + + + L + ++ V + E + R +G+ SP+ Y +
Sbjct: 85 PLFNPNSGYAYYLLGLLLFLLILIGALIIALSIVEEKESRIKERLLVSGV-SPLKYLLGK 143
Query: 1061 VLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMMLVAWTPNH 1120
+L + V +I+ + G L L + G +L + N
Sbjct: 144 ILG---DLLVGLIQLLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNS 200
Query: 1121 HIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFG 1173
A +V ++ L + G + P +P + +W + P + G +G
Sbjct: 201 EAAILVISILILLLSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLLRIIYG 253
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 9e-07
Identities = 48/212 (22%), Positives = 83/212 (39%), Gaps = 37/212 (17%)
Query: 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG-YPKNQE 742
++LV LN +S F + ++G +GSGK+TL+ G Y G I + Y +++
Sbjct: 37 NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY--GTIQVGDIYIGDKK 94
Query: 743 TFTRISGYCEQNDIHS--------PYV-----------TVYESLLYSAWLRLSSEVNSKT 783
+ I + V T+ + +++ + +K
Sbjct: 95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK 154
Query: 784 REMFVEEVMEL----VELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 839
F M L +E +P GLS Q++R+ IA L P I+ DEP
Sbjct: 155 LAKFYLNKMGLDDSYLERSPF-----------GLSGGQKRRVAIAGILAIQPEILIFDEP 203
Query: 840 TSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQ 871
T+GLD + +M+ + + +TV H
Sbjct: 204 TAGLDPKGEHEMMQLILDAKANNKTVFVITHT 235
|
Length = 320 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 55/209 (26%), Positives = 83/209 (39%), Gaps = 53/209 (25%)
Query: 15 SGKVTYNGHDMHEFVPQRTAAYISQH-DIHIGE------MTVRETLAFSARCQGVGSRYD 67
SGKVT +G D R +++ + + GE +T RE L + AR
Sbjct: 56 SGKVTIDGVDT-----VRDPSFVRRKIGVLFGERGLYARLTARENLKYFAR--------- 101
Query: 68 MLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEML 127
L LSR+E A+I A + K L L D VG
Sbjct: 102 -LNGLSRKEIKARI-------------------AELS-----KRLQLLEYLDRRVG---- 132
Query: 128 RGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISL 187
S G +++V LV L +DE ++GLD T + + Q + G A+I
Sbjct: 133 -EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN--EGRAVIFS 189
Query: 188 LQPAPEVYNLFDDIILVSDGQIVYQGPLE 216
EV L D +I++ G++V +G +E
Sbjct: 190 SHIMQEVEALCDRVIVLHKGEVVLEGSIE 218
|
Length = 245 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-06
Identities = 50/210 (23%), Positives = 90/210 (42%), Gaps = 58/210 (27%)
Query: 15 SGKVTYNGHDMHEFVPQ---RTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVE 71
SG++ +GHD+ ++ R +SQ D+ + TV E +A+
Sbjct: 56 SGRILIDGHDVRDYTLASLRRQIGLVSQ-DVFLFNDTVAENIAYGR-------------- 100
Query: 72 LSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGI- 130
P A + V + AN ++I++ L DTV+G+ RG+
Sbjct: 101 -----------PGAT----REEVEEAARAANA-HEFIME---LPEGYDTVIGE---RGVK 138
Query: 131 -SGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHIL-NGTALI--- 185
SGGQR+R+ L+ L +DE ++ LD+ + + +L ++ N T +
Sbjct: 139 LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAAL---ERLMKNRTTFVIAH 195
Query: 186 --SLLQPAPEVYNLFDDIILVSDGQIVYQG 213
S ++ A D I+++ DG+IV +G
Sbjct: 196 RLSTIENA-------DRIVVLEDGKIVERG 218
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 21/167 (12%)
Query: 701 LTALMGVTGSGKTTLMDVLAGRKTR-GYITGNITISGYP-KNQETFT---RISGYCEQND 755
+TAL+G +G GK+T + + I G + I G KNQ+ + +Q +
Sbjct: 30 ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPN 89
Query: 756 IHSPYVTVYESLLYSAWLRLSSEVNSKTRE-MFVEEVMELVEL-----NPLRQALVGLPG 809
+ ++YE++ Y+ +L + +K E V + ++ V L + L+Q + L G
Sbjct: 90 VFVK--SIYENISYAP--KLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSG 145
Query: 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVR 856
Q++RL IA L P ++ +DEPTS LD ++ V+ ++
Sbjct: 146 ------GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK 186
|
Length = 246 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 1e-06
Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 35/201 (17%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTL-------MDVLAGRKTRGYITGNITISGYPKN 740
+L V +PG + G TGSGK++L +D+ G+ + I IS P
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK----IVIDGIDISKLPL- 90
Query: 741 QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 800
+R+S + + + +L+S +R + + K + + E +E+ +L +
Sbjct: 91 HTLRSRLS------------IILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNM 138
Query: 801 RQALVGLPGVNGLSTE--------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVM 852
++L G G++ + TE QR+ +A V SI+ MDE T+ +D A ++
Sbjct: 139 VKSLPG--GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDM-ATENIL 195
Query: 853 RTVRNTVDTGRTVVCTIHQPS 873
+ V T RTVV H+ S
Sbjct: 196 QKVVMTAFADRTVVTIAHRVS 216
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-06
Identities = 58/211 (27%), Positives = 93/211 (44%), Gaps = 40/211 (18%)
Query: 681 VHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT--GNITISGY- 737
+D + +LNG+S G A++G +G+GK+T++ +L R Y G+ITI G
Sbjct: 271 AYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLL----FRFYDVNSGSITIDGQD 326
Query: 738 ---PKNQETFTRISGYCEQ-----NDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVE 789
Q++ R G Q ND T+ ++ Y T E V
Sbjct: 327 IRDVT-QQSLRRAIGIVPQDTVLFND------TIAYNIKYG--------RPDATAEE-VG 370
Query: 790 EVMELVELNPLRQAL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 842
E +++ Q+L VG G+ LS +++R+ IA ++ NP I+ +DE TS
Sbjct: 371 AAAEAAQIHDFIQSLPEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSA 429
Query: 843 LDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873
LD + +R V GRT + H+ S
Sbjct: 430 LDTHTEQAIQAALRE-VSAGRTTLVIAHRLS 459
|
Length = 497 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 51/204 (25%), Positives = 85/204 (41%), Gaps = 37/204 (18%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRI 747
+L G++ + G + A+MG GSGK+TL V+AG + G+I G
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81
Query: 748 S------GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL- 800
+ + Q I P V+ + +LRL+ NSK + L EL+PL
Sbjct: 82 AHLGIFLAF--QYPIEIPGVS------NADFLRLA--YNSKRKF------QGLPELDPLE 125
Query: 801 -------RQALVGLP------GVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 846
+ LVG+ VN G S ++KR I + + + +DE SGLD
Sbjct: 126 FLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDID 185
Query: 847 AAAVVMRTVRNTVDTGRTVVCTIH 870
A ++ + + + +++ H
Sbjct: 186 ALKIIAEGINKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 47/208 (22%), Positives = 85/208 (40%), Gaps = 22/208 (10%)
Query: 672 MPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGN 731
M E+K+ G +LN +S + R G A+ G +G GK+TL+ ++A + +G
Sbjct: 2 MLLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT--SGT 59
Query: 732 ITISGYPKNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFV 788
+ G + E + + YC Q TV ++L++ +R N +
Sbjct: 60 LLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-TVEDNLIFPWQIR-----NRRPDRAAA 113
Query: 789 EEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 848
+++ L P + LS +++R+ + L P I+ +DE TS LD
Sbjct: 114 LDLLARFAL-PDSIL---TKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNK 169
Query: 849 ----AVVMRTVRNTVDTGRTVVCTIHQP 872
++ R VR + V+ H
Sbjct: 170 RNIEEMIHRYVR---EQNVAVLWITHDK 194
|
Length = 223 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 1e-06
Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 18/200 (9%)
Query: 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY-----ITGNITISG- 736
+DK +L + ++ + +MG +GSGK+TL+ VL R Y + G + G
Sbjct: 21 NDKAILKD-ITIKIPNNSIFGIMGPSGSGKSTLLKVL-NRLIEIYDSKIKVDGKVLYFGK 78
Query: 737 --YPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREM--FVEEVM 792
+ + + G Q P++++Y+++ Y L S + RE+ VEE +
Sbjct: 79 DIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYP----LKSHGIKEKREIKKIVEECL 134
Query: 793 ELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVM 852
V L + P + LS Q++RLTIA L P ++ MDEPTS +D + +
Sbjct: 135 RKVGLWKEVYDRLNSPA-SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIE 193
Query: 853 RTVRNTVDTGRTVVCTIHQP 872
+ + + +V H P
Sbjct: 194 KLI-TELKNEIAIVIVSHNP 212
|
Length = 257 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 1e-06
Identities = 47/179 (26%), Positives = 85/179 (47%), Gaps = 13/179 (7%)
Query: 675 EMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTL---MDVLAGRKTRGYITGN 731
++++ VH K + VS F +TA++G +G GK+T+ ++ + +TG
Sbjct: 6 KLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGK 65
Query: 732 ITISG---YPKNQE--TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREM 786
I + Y + + + R G Q P +++Y++++ A +L+ VN +
Sbjct: 66 ILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADE 123
Query: 787 FVEEVMELVEL-NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
VE ++ V L + ++ L LS Q++RL IA + P +I MDEP S LD
Sbjct: 124 IVESSLKRVALWDEVKDRLKS--NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 45/202 (22%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGR---KTRGYIT-GNITISGYPKNQETF 744
L +S + +PG ++G TGSGK++L+ L R + G I + IS +
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALF-RLVELSSGSILIDGVDISKIGL-HDLR 77
Query: 745 TRISGYCEQNDIHSPYVTVYESLLYSAWLR-------LSSEVNSKTREMFVEEVMELVEL 797
+RIS Q + +L+S +R S+ EE+ + +E
Sbjct: 78 SRISI-IPQ-----------DPVLFSGTIRSNLDPFGEYSD----------EELWQALER 115
Query: 798 NPLRQALVGLPG-------VNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 848
L++ + LPG G LS QR+ L +A L+ I+ +DE T+ +D
Sbjct: 116 VGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETD 175
Query: 849 AVVMRTVRNTVDTGRTVVCTIH 870
A++ +T+R TV+ H
Sbjct: 176 ALIQKTIR-EAFKDCTVLTIAH 196
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-06
Identities = 50/152 (32%), Positives = 76/152 (50%), Gaps = 18/152 (11%)
Query: 706 GVTGSGKTTLMDVLAGRKTRGYIT-GNITISGYPKNQ-ETFTRISGYCEQNDIHSPYVTV 763
G +G GK+TL+ ++AG + IT G++ I N R G Q+ P+++V
Sbjct: 36 GPSGCGKSTLLRMIAGLED---ITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSV 92
Query: 764 YESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL--RQALVGLPGVNGLSTEQRKRL 821
E++ S L+L+ + V +V E+++L L R+ LS QR+R+
Sbjct: 93 AENM--SFGLKLAG-AKKEEINQRVNQVAEVLQLAHLLDRKP-------KALSGGQRQRV 142
Query: 822 TIAVELVANPSIIFMDEPTSGLDARAAAVVMR 853
I LVA PS+ +DEP S LDA A V MR
Sbjct: 143 AIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 14/175 (8%)
Query: 704 LMGVTGSGKTTLMDVL----AGRKTRGYITGN-ITISGYPKNQE--TFTRISGYCEQNDI 756
L+G +G+GK++L+ VL R I GN S P ++ R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN 92
Query: 757 HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 816
P++TV E+L+ + V +++ + +L++ L+ P LS
Sbjct: 93 LWPHLTVQENLIEA-----PCRVLGLSKDQALARAEKLLKRLRLKPYADRYP--LHLSGG 145
Query: 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQ 871
Q++R+ IA L+ P ++ DEPT+ LD A ++ ++ +TG T V H+
Sbjct: 146 QQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Query: 119 DTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHI 178
DT+VG+ L+ +SGG+++RV ++ L +DE ++ LD+ T I +L +
Sbjct: 128 DTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAAL---RDV 183
Query: 179 LNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219
G I + + N D II++ DG+IV +G H E
Sbjct: 184 SKGRTTIVIAHRLSTIVNA-DKIIVLKDGRIVERGT--HEE 221
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 2e-06
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQP 872
LS +R+ + IA L N ++ +DEPT+ L + + +R G V+ H+
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142
Query: 873 SIDIFEAFDAGIPGVSKIRDG 893
++FE D V+ +RDG
Sbjct: 143 D-EVFEIADR----VTVLRDG 158
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 687 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY------ITGNITISGYP 738
+L +S PG +TAL+G G+GK+TL+ LAG T G +TG++T++G P
Sbjct: 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEP 72
|
Length = 272 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 51/190 (26%), Positives = 93/190 (48%), Gaps = 30/190 (15%)
Query: 695 AFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG--YPKNQETFTRISGYCE 752
F G +TA++G +GSGK+TL++++AG +T +G + I+G +S +
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ--SGRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 753 QNDIHSPYVTVYES--LLYSAWLRLSSE----VNSKTREMFVEEVMELVELNPLRQALVG 806
+N++ ++TV ++ L S L+L++E + + + + R
Sbjct: 78 ENNLF-AHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLE-------KR----- 124
Query: 807 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAVVMRTVRNTV--DTGR 863
LPG LS +R+R+ +A LV + ++ +DEP + LD A A M + + +T
Sbjct: 125 LPGE--LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE--MLDLVLDLHAETKM 180
Query: 864 TVVCTIHQPS 873
TV+ HQP
Sbjct: 181 TVLMVTHQPE 190
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 55/192 (28%), Positives = 91/192 (47%), Gaps = 21/192 (10%)
Query: 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLA 720
+TF ++ + +RR ++D V+ + G A++G TGSGK+TL+ L
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYD--------VNVSIPSGSYVAIIGHTGSGKSTLLQHLN 54
Query: 721 G--RKTRGYIT-GNITISGYPKNQE--TFTRISGYCEQNDIHSPY-VTVYESLLYSAWLR 774
G + T G +T G I+ KN++ + G Q H + TV + + +
Sbjct: 55 GLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF 114
Query: 775 LSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSII 834
SE ++K + E++ELV L + L P LS Q +R+ IA L P ++
Sbjct: 115 GVSEEDAKQK---AREMIELVGLPE--ELLARSP--FELSGGQMRRVAIAGVLAMEPEVL 167
Query: 835 FMDEPTSGLDAR 846
+DEPT+GLD +
Sbjct: 168 VLDEPTAGLDPK 179
|
Length = 290 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-06
Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 16/189 (8%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI--TGNITISGYP----KNQE 742
L+G++ RPG AL+G +G+GK+TL +L R Y +G I + G E
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLL----LRFYDPQSGRILLDGVDLRQLDPAE 411
Query: 743 TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQ 802
R++ + + + +V E++ Y EV + R E + L
Sbjct: 412 LRARMALVPQDPVLFA--ASVMENIRYGRPDATDEEVEAAARAAHAHEFIS--ALPEGYD 467
Query: 803 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTG 862
+G GV LS QR+R+ IA ++ + I+ +DE TS LDA + +V + + T+ G
Sbjct: 468 TYLGERGV-TLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL-ETLMKG 525
Query: 863 RTVVCTIHQ 871
RT + H+
Sbjct: 526 RTTLIIAHR 534
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 55/270 (20%), Positives = 101/270 (37%), Gaps = 41/270 (15%)
Query: 631 RNSSSQSRETTIETDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLN 690
R + ++ T + + R +T + ++ D LL+
Sbjct: 363 RQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLR------------TPDGQTLLS 410
Query: 691 GVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGY 750
++ RPG + G +G+GKT+L+ LAG + G+ I P + +
Sbjct: 411 ELNFEVRPGERLLITGESGAGKTSLLRALAGL----WPWGSGRI-SMPADSALL-----F 460
Query: 751 CEQNDIHSPYV---TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGL 807
Q PY+ T+ E+L Y + + + + V+ V L L + L
Sbjct: 461 LPQ----RPYLPQGTLREALCYP---NAAPDFSDAE----LVAVLHKVGLGDLAERLDEE 509
Query: 808 -PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVV 866
LS +++RL A L+ P +F+DE TS LD + + ++ + TV+
Sbjct: 510 DRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVI 568
Query: 867 CTIHQPSIDIFEAFDAGIPGVSKIRDGYNP 896
H+P+ F + + G N
Sbjct: 569 SVGHRPT---LWNFHSRQLELLDDAGGQNL 595
|
Length = 604 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 53/206 (25%), Positives = 83/206 (40%), Gaps = 33/206 (16%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGY------PKNQ 741
+L G++ RPG + A+MG GSGK+TL LAGR+ G + G P+++
Sbjct: 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDR 75
Query: 742 ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNS--KTREM----------FVE 789
+ Q + P V S L + +N+ R +E
Sbjct: 76 AGEGIFMAF--QYPVEIPGV--------SNQFFLQTALNAVRSYRGQEPLDRFDFQDLME 125
Query: 790 EVMELVELNP-LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 848
E + L+++ L V + G S ++KR I V P + +DE SGLD A
Sbjct: 126 EKIALLKMPEDLLTRSVNV----GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDAL 181
Query: 849 AVVMRTVRNTVDTGRTVVCTIHQPSI 874
+V V + D R+ + H I
Sbjct: 182 KIVADGVNSLRDGKRSFIIVTHYQRI 207
|
Length = 248 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 59/234 (25%), Positives = 92/234 (39%), Gaps = 55/234 (23%)
Query: 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVL 719
+ ++Y+ + R + D V L G++ TA +G TGSGK+T+M +L
Sbjct: 2 GINLQNVSYTYQAGTPFEGRALFD---VNLTIEDGSY-----TAFIGHTGSGKSTIMQLL 53
Query: 720 AG--RKTRGYIT-GNITISGYPKNQETFTRISGYCEQNDIHSPYVTV------YESLLYS 770
G T+G + + I+ KN+ DI V ES L+
Sbjct: 54 NGLHVPTQGSVRVDDTLITSTSKNK-------------DIKQIRKKVGLVFQFPESQLFE 100
Query: 771 -------AWLRLSSEVNSKTREMFVEEVMELV-------ELNPLRQALVGLPGVNGLSTE 816
A+ + V+ + E E + LV E NP LS
Sbjct: 101 ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFE-----------LSGG 149
Query: 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIH 870
Q +R+ IA L P I+ +DEPT+GLD + +M + +G T+V H
Sbjct: 150 QMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTH 203
|
Length = 280 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 32/162 (19%)
Query: 701 LTALMGVTGSGKTTLM-------DVLAGRKTRGYITGNITISG---YPKNQETFT--RIS 748
+TAL+G +G GK+T + D+++ K I G + + G Y K+ + +
Sbjct: 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVK----IEGEVLLDGKNIYDKDVDVVELRKRV 87
Query: 749 GYCEQNDIHSPY-VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL-----NPLRQ 802
G Q +P+ +++Y+++ Y R+ + K + VE ++ L + L++
Sbjct: 88 GMVFQKP--NPFPMSIYDNVAYGP--RIHGIKDKKELDKIVEWALKKAALWDEVKDDLKK 143
Query: 803 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
+ + L G Q++RL IA + P +I MDEPTS LD
Sbjct: 144 SALKLSG------GQQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 2e-06
Identities = 48/168 (28%), Positives = 73/168 (43%), Gaps = 25/168 (14%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 748
L V+ PG + AL+G G+GK+TLM VL+G G ITI+ N+ +++
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT--KGTITINNINYNKLD-HKLA 77
Query: 749 GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVM--ELVELNPLRQA--- 803
Q I +Y+ L S L+ N ++V +++ +R
Sbjct: 78 A---QLGIG----IIYQEL--SVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAM 128
Query: 804 ---LVGL-----PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 843
VGL V LS ++ L IA L+ + +I MDEPTS L
Sbjct: 129 MLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL 176
|
Length = 510 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 3e-06
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 126 MLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALI 185
+ +SGGQR+RV L+ L +DE ++GLD ++ ++ L + G +I
Sbjct: 77 YVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVI 134
Query: 186 SLLQPAPEVYNLFDDIILVSDGQ 208
+ D +I++ DG+
Sbjct: 135 IVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 3e-06
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 792 MELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 851
+E VE++ R + LP S ++RL IA LV +P ++FMDEPT GLD A +
Sbjct: 135 LERVEIDAAR--IDDLPTT--FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARL 190
Query: 852 MRTVRNTV-DTGRTVVCTIH 870
+ +R V + G VV H
Sbjct: 191 LDLLRGLVRELGLAVVIVTH 210
|
Length = 258 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 4e-06
Identities = 56/204 (27%), Positives = 90/204 (44%), Gaps = 19/204 (9%)
Query: 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQET 743
D L VS G T+++G GSGK+T+ ++ G + +G I + +
Sbjct: 20 DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAITDDN 77
Query: 744 FTRIS---GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVME-LVELNP 799
F ++ G QN + V + Y L E ++ + V E L +++
Sbjct: 78 FEKLRKHIGIVFQNPDNQ---FVGSIVKYDVAFGL--ENHAVPYDEMHRRVSEALKQVDM 132
Query: 800 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNT- 858
L +A P N LS Q++R+ IA L NPS+I +DE TS LD A ++ VR
Sbjct: 133 LERA-DYEP--NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVK 189
Query: 859 VDTGRTVVCTIHQPSIDIFEAFDA 882
+ T++ H D+ EA +A
Sbjct: 190 SEHNITIISITH----DLSEAMEA 209
|
Length = 269 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 4e-06
Identities = 65/223 (29%), Positives = 97/223 (43%), Gaps = 43/223 (19%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG-----YITGNITISGYPKNQET 743
L+G + PG + AL+G G+GK+T+M VL G TR Y+ +T +G +QE
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEA 79
Query: 744 FTRISGYCEQNDIHS-----PYVTVYESLLY-----SAWLRLSSEVNSKTREMFVEEVME 793
I IH P +T+ E++ + + R+ ++M+ E
Sbjct: 80 GIGI--------IHQELNLIPQLTIAENIFLGREFVNRFGRI------DWKKMYAEADKL 125
Query: 794 LVELNPLR---QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAV 850
L LN LR LVG LS +++ + IA L +I MDEPT L
Sbjct: 126 LARLN-LRFSSDKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETES 179
Query: 851 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDAGIPGVSKIRDG 893
+ R +R GR +V H+ +IFE D V+ RDG
Sbjct: 180 LFRVIRELKSQGRGIVYISHRLK-EIFEICDD----VTVFRDG 217
|
Length = 501 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (119), Expect = 4e-06
Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 16/161 (9%)
Query: 701 LTALMGVTGSGKTTLM-------DVLAGRKTRG--YITGNITISGYPKNQETFTRISGYC 751
+TA +G +G GK+T + D++ G G Y G T S + E TRI
Sbjct: 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVF 169
Query: 752 EQNDIHSPY-VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGV 810
++ +P+ +++++++ Y R + + K E VE+ ++ L + + G
Sbjct: 170 QKP---TPFEMSIFDNVAYGP--RNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAG- 223
Query: 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 851
N LS Q++RL IA + P ++ MDEPTS LD A A +
Sbjct: 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKI 264
|
Length = 329 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 27/190 (14%)
Query: 700 VLTALMGVTGSGKTTLM---DVLAGRKTRGYITGNITISG---YPKNQETFT--RISGYC 751
+ ALMG +G GK+TL+ + L + G + + G Y + + R G
Sbjct: 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMV 90
Query: 752 EQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL--------NPLRQA 803
Q P++T+Y+++ + ++L+ V SK +E+ E VE + ++
Sbjct: 91 FQYPNPFPHLTIYDNV--AIGVKLNGLVKSK------KELDERVEWALKKAALWDEVKDR 142
Query: 804 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGR 863
L P LS QR+RL IA L P I+ MDEPT+ +D A + + +
Sbjct: 143 LNDYPS--NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE-LKKEY 199
Query: 864 TVVCTIHQPS 873
T+V H P+
Sbjct: 200 TIVLVTHSPA 209
|
Length = 253 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 4e-06
Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 16/163 (9%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY--ITGNITISGYPKNQETFTR 746
L ++ G AL+G +GSGK+T+ ++L TR Y G I + G+ T
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLL----TRFYDIDEGEILLDGHDLRDYTLAS 414
Query: 747 ISGYC---EQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQA 803
+ QN +H T+ ++ Y+ + S E + M M+ + +
Sbjct: 415 LRNQVALVSQN-VHLFNDTIANNIAYARTEQYSREQIEEAARM--AYAMDFIN--KMDNG 469
Query: 804 LVGLPGVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
L + G NG LS QR+R+ IA L+ + I+ +DE TS LD
Sbjct: 470 LDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512
|
Length = 582 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 5e-06
Identities = 50/198 (25%), Positives = 84/198 (42%), Gaps = 35/198 (17%)
Query: 687 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYP--KNQE 742
+L +G+S G L + G G+GKT+L+ +LAG R G + G P + ++
Sbjct: 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQ----GEPIRRQRD 70
Query: 743 TFTRISGYC-EQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR 801
+ + Y Q I +T E+L + RL + +E L
Sbjct: 71 EYHQDLLYLGHQPGI-KTELTALENLRFYQ--RLHGPGD--------DEA--------LW 111
Query: 802 QAL--VGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRT 854
+AL VGL G V LS Q++R+ +A + + +DEP + +D + A +
Sbjct: 112 EALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEAL 171
Query: 855 VRNTVDTGRTVVCTIHQP 872
+ + G V+ T HQ
Sbjct: 172 LAQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 5e-06
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQ 871
LS Q++R+ IA L P ++ DEPTS LD V++ +++ + GRT+V H+
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 5e-06
Identities = 52/204 (25%), Positives = 80/204 (39%), Gaps = 26/204 (12%)
Query: 685 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVL-------AGR---KTRGYITGNITI 734
+L +L VS G AL G +G+GK+TL+ L +GR + G
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79
Query: 735 SGYPKNQETFTRISGYCEQNDIHSPYVT----VYESLLYSAWLRLSSEVNSKTREMFVEE 790
S + E + GY Q P V+ V E LL RE
Sbjct: 80 SPR-EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLL----------ERGVPREAARAR 128
Query: 791 VMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAV 850
EL+ + + L LP S +++R+ IA +A+ I+ +DEPT+ LDA V
Sbjct: 129 ARELLARLNIPERLWHLPP-ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQV 187
Query: 851 VMRTVRNTVDTGRTVVCTIHQPSI 874
V+ + G ++ H +
Sbjct: 188 VVELIAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 5e-06
Identities = 52/196 (26%), Positives = 91/196 (46%), Gaps = 28/196 (14%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLM-------DVLAGRKTRGYITGNITISG---YP 738
LN ++ +TAL+G +G GK+T + D++ G K I GN+ G Y
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK----IEGNVIYEGKNIYS 78
Query: 739 KNQETFT--RISGYCEQNDIHSPYV-TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELV 795
N + R G Q +P++ ++Y+++ Y ++ + K + VE+ ++
Sbjct: 79 NNFDILELRRKIGMVFQTP--NPFLMSIYDNISYGP--KIHGTKDKKKLDEIVEQSLKKS 134
Query: 796 EL-NPLRQALVGLPGVNGLSTE--QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVM 852
L N ++ L N LS Q++RL IA L P++I MDEPTS LD + +
Sbjct: 135 ALWNEVKDKL----NTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIE 190
Query: 853 RTVRNTVDTGRTVVCT 868
+ N ++ ++ T
Sbjct: 191 ELIINLKESYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 50/183 (27%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLM-------DVLAGRKTRGYITGNITISGYPKNQ 741
L ++ +TAL+G +G GK+T + D++ K I G + + G
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDG----- 69
Query: 742 ETFTRISGYCEQNDIHS-------------PY-VTVYESLLYSAWLRLSSEVNSKTREMF 787
I Y D++ P+ +++Y+++ Y R + K +
Sbjct: 70 ---QDI--YKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGP--RTHGIKDKKKLDEI 122
Query: 788 VEE------VMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 841
VE+ + + V+ + AL GLS Q++RL IA L P ++ MDEPTS
Sbjct: 123 VEKSLKGAALWDEVKDRLKKSAL-------GLSGGQQQRLCIARALAVEPEVLLMDEPTS 175
Query: 842 GLD 844
LD
Sbjct: 176 ALD 178
|
Length = 250 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 6e-06
Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 32/185 (17%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK--NQETFT- 745
L+G+S F LTAL+G +G GK+T + L + I NI I+G K Q +
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCL--NRMNDDIE-NIKITGEIKFEGQNIYGS 76
Query: 746 --------RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL 797
+ G Q P+ +VY+++ Y L+++ K +E+ + V E
Sbjct: 77 KMDLVELRKEVGMVFQQPTPFPF-SVYDNVAYG--LKIAG---VKDKELIDQRVEE---- 126
Query: 798 NPLRQALVGLPGVNGL-------STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAV 850
L+QA + + L S Q++R+ IA L P ++ +DEPTS LD +++
Sbjct: 127 -SLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSE 185
Query: 851 VMRTV 855
+ T+
Sbjct: 186 IEETL 190
|
Length = 251 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 6e-06
Identities = 51/201 (25%), Positives = 85/201 (42%), Gaps = 36/201 (17%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI--TGNITISGYPKNQETFTR 746
L G++ PG + AL+G +GSGK+T+ +L Y G + + G P
Sbjct: 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALL----QNLYQPTGGQVLLDGVP-------- 544
Query: 747 ISGYCEQNDIHSPYVTV-YESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALV 805
+ Y + + +H V E +L+S +R + EE+M + ++
Sbjct: 545 LVQY-DHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPD--EEIMAAAKAANAHDFIM 601
Query: 806 GLPGVNGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRT 854
P NG TE Q++R+ IA LV P ++ +DE TS LDA +
Sbjct: 602 EFP--NGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE----CEQL 655
Query: 855 VRNTVDT-GRTVVCTIHQPSI 874
++ + RTV+ H+ S
Sbjct: 656 LQESRSRASRTVLLIAHRLST 676
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 6e-06
Identities = 55/202 (27%), Positives = 85/202 (42%), Gaps = 38/202 (18%)
Query: 670 VDMPQEMKRRGV---HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLM-------DVL 719
+ P +M+ RG+ + D L + +S F +TAL+G +G GK+T + D++
Sbjct: 1 MASPPKMEARGLSFFYGDFQAL-HDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLI 59
Query: 720 AGRKTRGYIT-GNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSE 778
G + G I I + R G Q P +++E++ Y LR
Sbjct: 60 PGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPK-SIFENVAYG--LR---- 112
Query: 779 VNSKTREMFVEEVMELVELNPLRQALV-----------GLPGVNGLSTEQRKRLTIAVEL 827
VN + ++ E +E LR A + L GLS Q++RL IA L
Sbjct: 113 VNGVKDKAYLAERVE----RSLRHAALWDEVKDRLHESAL----GLSGGQQQRLCIARAL 164
Query: 828 VANPSIIFMDEPTSGLDARAAA 849
P ++ MDEP S LD A
Sbjct: 165 AVEPEVLLMDEPASALDPIATQ 186
|
Length = 253 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 6e-06
Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 22/186 (11%)
Query: 675 EMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLM-------DVLAGRKTRGY 727
E++ + + + V+ +TA++G +G GKTTL+ D + G +
Sbjct: 5 EIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR---- 60
Query: 728 ITGNITISGY----PKNQETFTRIS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSK 782
+ G I G P+ T R G Q P +++Y+++ + R+ +
Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFG--PRIHGVKSKH 117
Query: 783 TREMFVEEVMELVEL-NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 841
+ VEE ++ L + ++ L PG LS Q++RL IA L P +I +DEPTS
Sbjct: 118 KLDRIVEESLKKAALWDEVKSEL-NKPGTR-LSGGQQQRLCIARALAVEPEVILLDEPTS 175
Query: 842 GLDARA 847
LD A
Sbjct: 176 ALDPIA 181
|
Length = 250 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 6e-06
Identities = 60/244 (24%), Positives = 97/244 (39%), Gaps = 26/244 (10%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETF--TR 746
L+G+ RPG L G G+GK+TLM +L+G G G I SG P T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 747 ISGYC--EQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL 804
+G Q P ++V E++ L +E+ M M L N LR+
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIF------LGNEITLPGGRMAYNA-MYLRAKNLLRE-- 127
Query: 805 VGLPGVN------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNT 858
+ L N Q++ + IA L ++ +DEP+S L + +++ +R+
Sbjct: 128 LQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL 187
Query: 859 VDTGRTVVCTIHQPSIDIFEAFDAGIPGVSKIRDGYNPATWMLEVTAPSQEIAL--GVDF 916
G V H+ A + IRDG + AT + + I + G +
Sbjct: 188 KAHGVACVYISHK-----LNEVKAVCDTICVIRDGQHVATKDMSTMSEDDIITMMVGREI 242
Query: 917 AAIY 920
++Y
Sbjct: 243 TSLY 246
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 7e-06
Identities = 46/212 (21%), Positives = 82/212 (38%), Gaps = 52/212 (24%)
Query: 668 YSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY 727
Y+ D+P +L VS + G ++G TG+GK+TL +LA +
Sbjct: 16 YAPDLPP-------------VLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFLEA 60
Query: 728 ITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESL--------LYSAWLRLSSEV 779
G I I G + P + SL L+S +R + +
Sbjct: 61 EEGKIEIDG----------------IDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDP 104
Query: 780 NSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 839
+ + + + + E G LS QR+ L +A L+ P ++ +DE
Sbjct: 105 FDEYSDEEIYGALRVSE------------GGLNLSQGQRQLLCLARALLKRPRVLVLDEA 152
Query: 840 TSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQ 871
T+ +D A++ +T+R T T++ H+
Sbjct: 153 TASIDYATDALIQKTIREEF-TNSTILTIAHR 183
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 7e-06
Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 28/188 (14%)
Query: 699 GVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHS 758
G LT ++G G GK++L+ + G + G + S +++ +F E +
Sbjct: 27 GQLTMIVGQVGCGKSSLLLAILGEMQT--LEGKVHWSNKNESEPSF-------EATRSRN 77
Query: 759 PYVTVYESLLYSAWLRLSSEVN---------SKTREMFVEEVMEL---VELNPL-RQALV 805
Y Y + WL L++ V +K R V + L ++L P Q +
Sbjct: 78 RYSVAYAA--QKPWL-LNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEI 134
Query: 806 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRT--VRNTVDTGR 863
G G+N LS QR+R+ +A L N +I+F+D+P S LD + +M+ ++ D R
Sbjct: 135 GERGIN-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKR 193
Query: 864 TVVCTIHQ 871
T+V H+
Sbjct: 194 TLVLVTHK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 7e-06
Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 9/157 (5%)
Query: 692 VSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTRISG 749
VS R G A++G GSGK+TL +LAG T G I N + RI
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 750 -YCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLP 808
+ + N +P + + + LRL++++ + R + E + +V L P
Sbjct: 92 IFQDPNTSLNPRLRI--GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYY--- 146
Query: 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 845
+ L+ Q++R+ +A L+ P II DE + LD
Sbjct: 147 -PHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 7e-06
Identities = 49/183 (26%), Positives = 87/183 (47%), Gaps = 37/183 (20%)
Query: 679 RGVH---DDKLVL----LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGN 731
RG+ D K V+ L +G F LT L+G +G GKTT++ ++AG +T +G
Sbjct: 18 RGISKSFDGKEVISNLDLTINNGEF----LT-LLGPSGCGKTTVLRLIAGFETPD--SGR 70
Query: 732 ITISGYPKNQETFTRISGYCEQNDIHS--------PYVTVYESLLYSAWLRLSSEVNSKT 783
I + G + T + E +++ P++TV+E++ + LR+ ++
Sbjct: 71 IMLDG-----QDITHVPA--ENRHVNTVFQSYALFPHMTVFENVAFG--LRMQKTPAAEI 121
Query: 784 REMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 843
V E + +V+L Q + LS Q++R+ IA +V P ++ +DE S L
Sbjct: 122 TPR-VMEALRMVQLEEFAQR-----KPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSAL 175
Query: 844 DAR 846
D +
Sbjct: 176 DYK 178
|
Length = 375 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 8e-06
Identities = 47/215 (21%), Positives = 79/215 (36%), Gaps = 54/215 (25%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQ---RTAAYISQH-DIHIGEMTVRETLAFS 56
+ L G L + SG+V +G D+ + + R + Q+ D TV E +AF
Sbjct: 44 LRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFG 100
Query: 57 ARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDV 116
G L E ++ V E L+++ L+
Sbjct: 101 LENLG----------LPEEE--------------IEERVEE----------ALELVGLEG 126
Query: 117 CADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFN 176
D L SGGQ++RV +L L +DE + GLD + ++ L +
Sbjct: 127 LRDRSP--FTL---SGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLK 181
Query: 177 HILNGTALISL---LQPAPEVYNLFDDIILVSDGQ 208
G +I + L + L D +I++ DG+
Sbjct: 182 A--EGKTIIIVTHDLD---LLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 8e-06
Identities = 65/252 (25%), Positives = 105/252 (41%), Gaps = 45/252 (17%)
Query: 636 QSRETTIETDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGA 695
++ + ++P + LP ++ F IT+ + +GV D VS
Sbjct: 311 DLEDSVFQREEPADAPE-LPNVKGAVEFRHITF--EFAN--SSQGVFD--------VSFE 357
Query: 696 FRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQND 755
+ G A++G TG+GKTTL+++L ++ G I I G + T TR
Sbjct: 358 AKAGQTVAIVGPTGAGKTTLINLL--QRVYDPTVGQILIDGI--DINTVTR-------ES 406
Query: 756 IHSPYVTVYESL-LYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQ----------AL 804
+ TV++ L++ +R + + + EEV E + L
Sbjct: 407 LRKSIATVFQDAGLFNRSIRENIRLGREGATD--EEVYEAAKAAAAHDFILKRSNGYDTL 464
Query: 805 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT--- 861
VG G N LS +R+RL IA ++ N I+ +DE TS LD A V+N +D
Sbjct: 465 VGERG-NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEA----RVKNAIDALRK 519
Query: 862 GRTVVCTIHQPS 873
RT H+ S
Sbjct: 520 NRTTFIIAHRLS 531
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 8e-06
Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 27/152 (17%)
Query: 702 TALMGVTGSGKTTLMDVLAG--RKTRGYITGNITI-----SG--YPKNQETFTRISGYCE 752
TA+ G +G+GKT+L++ ++G R +G I N + G P + RI GY
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR---RI-GYVF 82
Query: 753 QNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNG 812
Q+ P+ V +L Y + F ++++ L+ + PL L PG
Sbjct: 83 QDARLFPHYKVRGNLRYG--------MAKSMVAQF-DKIVALLGIEPL---LDRYPG--S 128
Query: 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 8e-06
Identities = 54/185 (29%), Positives = 83/185 (44%), Gaps = 43/185 (23%)
Query: 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQ- 741
L+ +N V+ R + +L+G G+GKTT+ + L G + T G I I G P +Q
Sbjct: 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI 77
Query: 742 ------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNS---KT--------- 783
TF + + E +TV E+LL + +L + + S KT
Sbjct: 78 ARMGVVRTFQHVRLFRE--------MTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESE 129
Query: 784 ---REMFVEEVMELVEL-NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 839
R E + L+E N RQA L+ Q++RL IA +V P I+ +DEP
Sbjct: 130 ALDRAATWLERVGLLEHAN--RQA-------GNLAYGQQRRLEIARCMVTQPEILMLDEP 180
Query: 840 TSGLD 844
+GL+
Sbjct: 181 AAGLN 185
|
Length = 255 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 8e-06
Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 25/155 (16%)
Query: 699 GVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDI-- 756
G + L+G +G GKTT++ ++AG + G I I G E T S +Q DI
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG-----EDVTHRS--IQQRDICM 82
Query: 757 --HS----PYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGV 810
S P++++ E++ Y L++ V + R+ V+E +ELV+L V
Sbjct: 83 VFQSYALFPHMSLGENVGYG--LKMLG-VPKEERKQRVKEALELVDLAGFEDRYV----- 134
Query: 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 845
+ +S Q++R+ +A L+ P ++ DEP S LDA
Sbjct: 135 DQISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
|
Length = 351 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 9e-06
Identities = 54/211 (25%), Positives = 83/211 (39%), Gaps = 60/211 (28%)
Query: 15 SGKVTYNGHDMHEFVPQ---RTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVE 71
SG V +G D+ + P R Y+ Q D+ + T+R+ + A
Sbjct: 58 SGSVLLDGTDIRQLDPADLRRNIGYVPQ-DVTLFYGTLRDNITLGA-------------- 102
Query: 72 LSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKV---LDLDVCADTVVGDEMLR 128
P AD + ++A G +TD++ K LDL + E R
Sbjct: 103 -----------PLADDERILRAAELAG-----VTDFVNKHPNGLDLQI-------GERGR 139
Query: 129 GISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALI--- 185
G+SGGQR+ V L+ L +DE ++ +D ++ + L Q L LI
Sbjct: 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQL---LGDKTLIIIT 196
Query: 186 ---SLLQPAPEVYNLFDDIILVSDGQIVYQG 213
SLL L D II++ G+IV G
Sbjct: 197 HRPSLLD-------LVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 1e-05
Identities = 47/217 (21%), Positives = 80/217 (36%), Gaps = 52/217 (23%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQH------DIH-IGEMTVRETL 53
+L + G LD SG+V +G D+ + + AA+ +H + + ++T E +
Sbjct: 46 LLNILGGLDRP--TSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENV 103
Query: 54 AFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLD 113
GV + RRE+A +++ + + E
Sbjct: 104 ELPLLLAGVPKK-------ERRERAEELLERVGLGDRLNHYPSE---------------- 140
Query: 114 LDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG-LDSSTTFHIVNSL 172
+SGGQ++RV L + DE TG LDS T ++ L
Sbjct: 141 ----------------LSGGQQQRVAIARALANDPKIILADE-PTGNLDSETGKEVMELL 183
Query: 173 GQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQI 209
+ N T ++ PE+ D II + DG+I
Sbjct: 184 RELNKEAGTTIVVVTHD--PELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 40/158 (25%), Positives = 63/158 (39%), Gaps = 40/158 (25%)
Query: 106 DYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 165
D++ ++LDL+ + + R +S GQR R L+ P LF+DE + GLD +
Sbjct: 138 DFLTEILDLE----GFLKWPV-RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQ 192
Query: 166 FHIVNSLGQFN-----------HILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGP 214
+I L ++N HI + A L D ++L+ GQ+V+ G
Sbjct: 193 ANIREFLKEYNEERQATVLLTTHIFDDIA------------TLCDRVLLIDQGQLVFDGT 240
Query: 215 LEH-VEQFFISMGFKCPKRKGIADFLQEVTSRKDQEQY 251
L EQF +F E+ K Q
Sbjct: 241 LAQLQEQFG-----------PYKEFSVELKQAKSLSQL 267
|
Length = 325 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 1e-05
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 16/97 (16%)
Query: 128 RGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALI-- 185
R +SGGQR+ V L+ L +DE ++ +D+ + + L L G L+
Sbjct: 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRL---KRWLAGKTLVLV 656
Query: 186 ----SLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218
SLL L D II++ +G+IV GP + V
Sbjct: 657 THRTSLLD-------LVDRIIVMDNGRIVADGPKDQV 686
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-05
Identities = 50/214 (23%), Positives = 90/214 (42%), Gaps = 55/214 (25%)
Query: 15 SGKVTYNGHDMHEFVPQ---RTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVE 71
SG++ +GHD+ ++ R A +SQ D+ + T+ +A+ Q
Sbjct: 386 SGQILLDGHDLADYTLASLRRQVALVSQ-DVVLFNDTIANNIAYGRTEQ----------- 433
Query: 72 LSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGIS 131
A+I A D++ K L + DT +G+ + +S
Sbjct: 434 ----------ADRAEI--------ERALAAAYAQDFVDK---LPLGLDTPIGENGVL-LS 471
Query: 132 GGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNG-TALI----- 185
GGQR+R+ L+ A L +DE ++ LD+ + + +L ++ G T L+
Sbjct: 472 GGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAAL---ERLMQGRTTLVIAHRL 528
Query: 186 SLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219
S ++ A D I+++ DG+IV +G H E
Sbjct: 529 STIEKA-------DRIVVMDDGRIVERGT--HNE 553
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-05
Identities = 49/207 (23%), Positives = 86/207 (41%), Gaps = 25/207 (12%)
Query: 675 EMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITI 734
E++ D K V +S + G + G+ GSG+T LM+ L G R G I +
Sbjct: 267 EVRNVTSRDRKKV--RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR--AGGEIRL 322
Query: 735 SG---YPKNQ-ETFTRISGYCEQNDIHSPY---------VTVYESLLYSAWLRLSSEVNS 781
+G P++ + + Y ++ + + + + SL + +
Sbjct: 323 NGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHE 382
Query: 782 KTREMFVEEVMELVEL--NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 839
+ E EL+ L + + Q + L G N Q+K L I+ L P +I DEP
Sbjct: 383 VDEQRTAENQRELLALKCHSVNQNITELSGGN-----QQKVL-ISKWLCCCPEVIIFDEP 436
Query: 840 TSGLDARAAAVVMRTVRNTVDTGRTVV 866
T G+D A A + + +R D G+ ++
Sbjct: 437 TRGIDVGAKAEIYKVMRQLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 41/194 (21%), Positives = 75/194 (38%), Gaps = 61/194 (31%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 748
L + + VL + GV+GSGK+TL
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTL--------------------------------- 37
Query: 749 GYCEQNDIHSPYVTVYESLLYSAWLRLSS--EVNSKTREMFVEEVMELVELN----PLRQ 802
V E L S RL S S+ + +F++++ L+++ L Q
Sbjct: 38 --------------VNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQ 83
Query: 803 ALVGLPGVNGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAVVMRTVRNTVD 860
L + LS + +R+ +A EL + P ++ +DEP++GL + ++ ++ +D
Sbjct: 84 KL------STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID 137
Query: 861 TGRTVVCTIHQPSI 874
G TV+ H +
Sbjct: 138 LGNTVILIEHNLDV 151
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-05
Identities = 64/241 (26%), Positives = 105/241 (43%), Gaps = 38/241 (15%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 748
L+ V+ RP + ALMG G+GK+TL+ L G + +G+I G + ++ S
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD--SGSILFQGKEIDFKS----S 67
Query: 749 GYCEQNDI---HSPYVTVYE-SLLYSAWLRLSSEVNSKTREMFVEE----------VMEL 794
+N I H V + S++ + WL T+ MFV++ EL
Sbjct: 68 KEALENGISMVHQELNLVLQRSVMDNMWLG-----RYPTKGMFVDQDKMYRDTKAIFDEL 122
Query: 795 -VELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMR 853
++++P + V LS Q + + IA N I+ MDEPTS L + +
Sbjct: 123 DIDIDPRAK-------VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFT 175
Query: 854 TVRNTVDTGRTVVCTIHQPSIDIFEAFDAGIPGVSKIRDGYNPATWMLEVTAPSQEIALG 913
+R + G +V H+ +IF+ D ++ +RDG AT L + IA+
Sbjct: 176 IIRKLKERGCGIVYISHKME-EIFQLCDE----ITILRDGQWIATQPLAGLTMDKIIAMM 230
Query: 914 V 914
V
Sbjct: 231 V 231
|
Length = 491 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 1e-05
Identities = 51/204 (25%), Positives = 96/204 (47%), Gaps = 34/204 (16%)
Query: 682 HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI--TGNITISGYPK 739
D K L ++ G AL+G +G+GKT+L++ L G ++ G++ I+G
Sbjct: 360 PDGK-TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-----FLPYQGSLKINGIEL 413
Query: 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE 796
+ E++ + + QN P+ T+ +++L N + E++ + +E
Sbjct: 414 RELDPESWRKHLSWVGQNP-QLPHGTLRDNVLLG---------NPDASD---EQLQQALE 460
Query: 797 LNPLRQALVGLP-GVN--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 847
+ + L LP G++ GLS Q +RL +A L+ ++ +DEPT+ LDA +
Sbjct: 461 NAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHS 520
Query: 848 AAVVMRTVRNTVDTGRTVVCTIHQ 871
+VM+ + N +T + HQ
Sbjct: 521 EQLVMQAL-NAASRRQTTLMVTHQ 543
|
Length = 588 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 23/189 (12%)
Query: 675 EMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITI 734
E K +L +S F G + ++G +G+GK+TL+ ++ + G+I I
Sbjct: 5 EFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI--NRLIDPTEGSILI 62
Query: 735 SGYP-KNQET--FTRISGYCEQNDIHSPYV---TVYESLLYSAWLRLSSEVNSKTREMFV 788
G K + R G Q P++ TV +++ Y L+ V+ V
Sbjct: 63 DGVDIKTIDVIDLRRKIGMVFQQ----PHLFEGTVKDNIEYGPMLKGEKNVD-------V 111
Query: 789 EEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 848
E + +V LN V LS + +R++IA L NP ++ +DEPTS LD +
Sbjct: 112 EYYLSIVGLN----KEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTST 167
Query: 849 AVVMRTVRN 857
++ +
Sbjct: 168 EIIEELIVK 176
|
Length = 241 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 56/268 (20%), Positives = 111/268 (41%), Gaps = 33/268 (12%)
Query: 973 RNPHYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQ 1032
++ + +R I +L+ G M+W + +D+ + +G ++ F GV +
Sbjct: 404 KHESFNTLRVFQVIAAALLAGLMWWH-----SDFRDVQDRLGLLFFISIFWGVFPSFNSV 458
Query: 1033 PVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKF 1092
V ER++F +E+ +GMY+ +Y A+++ ++P + + + Y M G + F
Sbjct: 459 FVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAF 518
Query: 1093 FWFLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWR 1152
L + +L G+ L A + AS + T+ + + GF + ++P
Sbjct: 519 LLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYV--HKLPSCMA 576
Query: 1153 WSYWANPIAWTLYGF---FASQFGDVQDRLESGETVKQFL---------RSYYGF-KHDF 1199
W + I+ T Y + Q+G G+ + L R+ F + D
Sbjct: 577 WIKY---ISTTFYSYRLLINVQYG-------EGKRISSLLGCSLPHGSDRASCKFVEEDV 626
Query: 1200 LGAVAAVVFVLPSLFAFVFALGIRVLNF 1227
G ++ V +F FV G R+L +
Sbjct: 627 AGQISPATSVSVLIFMFV---GYRLLAY 651
|
Length = 659 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 2e-05
Identities = 47/209 (22%), Positives = 90/209 (43%), Gaps = 56/209 (26%)
Query: 15 SGKVTYNGHDMHEFVPQ---RTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVE 71
SG++ +G D+ + + +SQ + + + T+ E + + + D
Sbjct: 57 SGEILLDGVDIRDLNLRWLRSQIGLVSQ-EPVLFDGTIAENIRYG--------KPD--AT 105
Query: 72 LSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRG-- 129
E+AAK +AN I D+I+ + D DT+VG+ RG
Sbjct: 106 DEEVEEAAK-------------------KAN-IHDFIMSLPD---GYDTLVGE---RGSQ 139
Query: 130 ISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALI---- 185
+SGGQ++R+ L+ L +DE ++ LD+ + + +L + + T ++
Sbjct: 140 LSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRA--MKGRTTIVIAHR 197
Query: 186 -SLLQPAPEVYNLFDDIILVSDGQIVYQG 213
S ++ A D I ++ +GQ+V QG
Sbjct: 198 LSTIRNA-------DLIAVLQNGQVVEQG 219
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 2e-05
Identities = 55/244 (22%), Positives = 84/244 (34%), Gaps = 56/244 (22%)
Query: 15 SGKVTYNGHDMHEF--VPQRTA----AYISQHDIHIGEMTVRETLAFSARCQGVGSRYDM 68
SG V +G D+ R I QH + TV E +AF GV
Sbjct: 60 SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGV------ 113
Query: 69 LVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLR 128
+ E ++ +L+++ L AD
Sbjct: 114 ----PKAEIKQRVAE------------------------LLELVGLSDKADRYPAQ---- 141
Query: 129 GISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLL 188
+SGGQ++RV L L DE ++ LD TT I+ L N L T I L+
Sbjct: 142 -LSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLT--IVLI 198
Query: 189 QPAPEVY-NLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQEVTSRKD 247
EV + D + ++ G++V +G + V F PK +F+ E
Sbjct: 199 THEMEVVKRICDRVAVLDQGRLVEEGTVSEV--------FANPKHAITQEFIGETLEIDL 250
Query: 248 QEQY 251
E+
Sbjct: 251 PEEL 254
|
Length = 339 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 19/199 (9%)
Query: 675 EMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GN 731
+ H K+ L+ VS G + L+G G+GKTTL+ L G R T G I
Sbjct: 7 SFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDG 66
Query: 732 ITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEV 791
I+ + + ++ E + S +TV E+L + R+ F E +
Sbjct: 67 KDITDWQTAKIMREAVAIVPEGRRVFS-RMTVEENLAMGGFF--------AERDQFQERI 117
Query: 792 MELVELNP-LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAV 850
+ EL P L + + G +S +++ L I L++ P ++ +DEP+ GL A +
Sbjct: 118 KWVYELFPRLHERRIQRAGT--MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL----API 171
Query: 851 VMRTVRNTVDTGRTVVCTI 869
+++ + +T++ R TI
Sbjct: 172 IIQQIFDTIEQLREQGMTI 190
|
Length = 237 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 46/179 (25%), Positives = 63/179 (35%), Gaps = 59/179 (32%)
Query: 675 EMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNI 732
+ + + ++GVS + + G L+G +G GK+TL ++ G T G I
Sbjct: 15 PVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSG----EI 70
Query: 733 TISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVM 792
G DI SK E V+
Sbjct: 71 LFEG-----------------KDITK---------------------LSKEER--RERVL 90
Query: 793 ELVELNPLRQALVGLPGVNG------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 845
EL+E VGLP LS QR+R+ IA L NP +I DEP S LD
Sbjct: 91 ELLEK-------VGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 31 QRTAAYISQHDIHIGEMTVRETLAFSARCQGVG----SRYDMLVELSRR 75
QR+ Y+ Q D+H +TVRE L FSA +G+ R + VEL+ +
Sbjct: 78 QRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVEQRKRLTIGVELAAK 126
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 49/226 (21%)
Query: 15 SGKVTYNGHDMHEFVPQ-RTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELS 73
SGK+ NG D+ P+ R +Y+ Q+ MTV + +A+ + ++
Sbjct: 53 SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLK----------KRKVD 102
Query: 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGG 133
++E K++ +I + I +L+ +SGG
Sbjct: 103 KKEIERKVL---EIAEMLG---------------IDHLLNRKP-----------ETLSGG 133
Query: 134 QRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPE 193
+++RV LV L +DE + LD T + L + G ++ + E
Sbjct: 134 EQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREEL-KKIRKEFGVTVLHVTHDFEE 192
Query: 194 VYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFL 239
+ L D + ++ +G+++ G E V FK PK + +A+FL
Sbjct: 193 AWALADKVAIMLNGKLIQVGKPEEV--------FKKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 24/191 (12%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETFT 745
L +SG R G + L+G G+GK+TL+ +AG + +G+I +G P
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GSGSIQFAGQPLEAWSATELA 71
Query: 746 RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL-NPLRQAL 804
R Y Q +P W L+ KTR + +V + L + L ++
Sbjct: 72 RHRAYLSQQ--QTP------PFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRST 123
Query: 805 VGLPGVNGLSTEQRKRLT---IAVELVANPS--IIFMDEPTSGLDARAAAVVMRTVRNTV 859
L G QR RL + + ANP+ ++ +DEP + LD + + R +
Sbjct: 124 NQLSG----GEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALC 179
Query: 860 DTGRTVVCTIH 870
G +V + H
Sbjct: 180 QQGLAIVMSSH 190
|
Length = 248 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-05
Identities = 50/191 (26%), Positives = 74/191 (38%), Gaps = 66/191 (34%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRG--YITG-NITISG------- 736
L+ V+ G L+G TGSGK+TL+ L G + T G I G +IT
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
Query: 737 --------YPKNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS-SEVNSKTR 784
YP+ Q ET + + N L LS E+ ++
Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIAFGPIN------------------LGLSEEEIENR-- 122
Query: 785 EMFVEEVMELVELN--------PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 836
V+ M +V L+ P LS Q++R+ IA + P I+ +
Sbjct: 123 ---VKRAMNIVGLDYEDYKDKSPFE-----------LSGGQKRRVAIAGVVAMEPKILIL 168
Query: 837 DEPTSGLDARA 847
DEPT+GLD +
Sbjct: 169 DEPTAGLDPKG 179
|
Length = 287 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 3e-05
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 9/125 (7%)
Query: 130 ISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQ 189
+SGGQ++RV L L DE ++ LD +TT I+ L + N L T L+ +
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILL-ITH 199
Query: 190 PAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQEVTSRKDQE 249
V + D + ++S+G+++ QG + + F PK F++ E
Sbjct: 200 EMDVVKRICDCVAVISNGELIEQGTVSEI--------FSHPKTPLAQKFIRSTLHLSIPE 251
Query: 250 QYWVR 254
Y R
Sbjct: 252 DYQER 256
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 42/186 (22%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLM-------DVLAGRKTRGYITGNITISG---YP 738
L +S +TA +G +G GK+TL+ D++ + I G I + G Y
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR----IEGEIRLDGQNIYD 96
Query: 739 KNQE--TFTRISGYCEQNDIHSPY-VTVYESLLYSAWLRLSSEVNSKTREMFVE------ 789
K + R G Q +P+ ++YE+++Y LRL N + + VE
Sbjct: 97 KKVDVAELRRRVGMVFQRP--NPFPKSIYENVVYG--LRLQGINNRRVLDEAVERSLRGA 152
Query: 790 ----EVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 845
EV + + N GLS Q++RL IA + P ++ +DEPTS LD
Sbjct: 153 ALWDEVKDRLHENAF-----------GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDP 201
Query: 846 RAAAVV 851
+ +
Sbjct: 202 ISTLKI 207
|
Length = 272 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 30/193 (15%)
Query: 692 VSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFT-----R 746
+S R G + L+G G+GK+TL+ +AG G +G+I +G + E ++ R
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAG-LLPG--SGSIQFAG--QPLEAWSAAELAR 69
Query: 747 ISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVG 806
Y Q + V++ L L + ++ + EV E + L+
Sbjct: 70 HRAYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVAEALGLDDK------ 119
Query: 807 LP-GVNGLS-TE-QRKRLTIAVEL----VANPS--IIFMDEPTSGLDARAAAVVMRTVRN 857
L VN LS E QR RL AV L NP+ ++ +DEP + LD A + R +
Sbjct: 120 LGRSVNQLSGGEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSE 178
Query: 858 TVDTGRTVVCTIH 870
G VV + H
Sbjct: 179 LCQQGIAVVMSSH 191
|
Length = 248 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 4e-05
Identities = 55/206 (26%), Positives = 79/206 (38%), Gaps = 59/206 (28%)
Query: 687 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTR 746
VLL VS + G LT ++G TGSGK+TL+ L
Sbjct: 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLS------------------------- 708
Query: 747 ISGYCEQNDIHSPYVTVYESLLY---SAWLRLSSEVNSKTRE---MFVEE----VMELVE 796
Q +I V S+ Y AW+ +N+ R F EE + + V
Sbjct: 709 ------QFEISEGRVWAERSIAYVPQQAWI-----MNATVRGNILFFDEEDAARLADAVR 757
Query: 797 LNPLRQALVGLPGVNGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDA 845
++ L L L G GL TE Q+ R+++A + AN + +D+P S LDA
Sbjct: 758 VSQLEADLAQLGG--GLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDA 815
Query: 846 RAAAVVMRTVRNTVDTGRTVVCTIHQ 871
V+ G+T V HQ
Sbjct: 816 HVGERVVEECFLGALAGKTRVLATHQ 841
|
Length = 1560 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 5e-05
Identities = 44/212 (20%), Positives = 82/212 (38%), Gaps = 50/212 (23%)
Query: 15 SGKVTYNGHDMHE--FVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVEL 72
SG V G D+ + QR Y+ +H+ +M VRE L F A G+ +
Sbjct: 56 SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQ------- 108
Query: 73 SRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISG 132
+++ ++I ++ + + +S
Sbjct: 109 LLKQRVEEMI--------------------------------ELVGLRPEQHKKIGQLSK 136
Query: 133 GQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVN---SLGQFNHILNGTALISLLQ 189
G R+RV + L+ L +DE +TGLD + I N ++G+ I+ T ++
Sbjct: 137 GYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQ--- 193
Query: 190 PAPEVYNLFDDIILVSDGQIVYQGPLEHVEQF 221
EV + D +I+++ G+IV L+ +
Sbjct: 194 ---EVEAICDRVIIINKGKIVADKKLDELSAA 222
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 5e-05
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738
L+GVS + R G + AL+G G+GK+TLM +L+G +G I + G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD--SGEILVDGKE 63
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-05
Identities = 57/213 (26%), Positives = 88/213 (41%), Gaps = 35/213 (16%)
Query: 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG-RKTRGYITGNITISGYPKNQ 741
+ + L VS G A++G GSGK+T+ +L G K + G I I G ++
Sbjct: 19 NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQS---GEIKIDGITISK 75
Query: 742 ETFTRIS---GYCEQN-DIHSPYVTVYESLLYSAWL---RLSSEVNSKTREMFVEEV-ME 793
E I G QN D TV + + + L ++ + + ++V ME
Sbjct: 76 ENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFG--LENKKVPPKKMKDIIDDLAKKVGME 133
Query: 794 -LVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV- 851
++ P LS Q++R+ IA L NP II DE TS LD + +
Sbjct: 134 DYLDKEPQN-----------LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIK 182
Query: 852 --MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882
M +R T +T++ H D+ EA A
Sbjct: 183 KIMVDLRKTRK--KTLISITH----DMDEAILA 209
|
Length = 271 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 5e-05
Identities = 46/178 (25%), Positives = 72/178 (40%), Gaps = 23/178 (12%)
Query: 698 PGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIH 757
G + G G+GKTTL+ VLAG +G I I G + +R Y
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 758 SPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPG-----VNG 812
++ E+L + L + ++M + L A+VGL G V
Sbjct: 94 KADLSTLENLHFLCGLH-----GRRAKQM---------PGSAL--AIVGLAGYEDTLVRQ 137
Query: 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIH 870
LS Q+KRL +A ++ + +DEP + LD +V R + + G + T H
Sbjct: 138 LSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 5e-05
Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 30/187 (16%)
Query: 675 EMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLM-------DVLAGRKTRGY 727
E++ + D +L V+ +TAL+G +G GK+T + D++ G + G
Sbjct: 5 EVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEG- 63
Query: 728 ITGNITISG---YPKNQET--FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSK 782
+I + G Y + + G Q P ++++++ Y LR+ E +
Sbjct: 64 ---HIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYG--LRIHGEDDED 117
Query: 783 TREMFVEEVMELVEL-----NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 837
E VEE ++ L + L ++ +GL G Q++RL IA + +P +I MD
Sbjct: 118 FIEERVEESLKAAALWDEVKDKLDKSALGLSG------GQQQRLCIARTIAVSPEVILMD 171
Query: 838 EPTSGLD 844
EP S LD
Sbjct: 172 EPCSALD 178
|
Length = 250 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 5e-05
Identities = 52/205 (25%), Positives = 92/205 (44%), Gaps = 29/205 (14%)
Query: 668 YSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTR 725
SVD RGV + ++ VS + G + ++G +G+GKTTL ++AG T
Sbjct: 290 ISVD-------RGV----VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTS 338
Query: 726 GYI---TG----NITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSE 778
G + G ++T G P + R G Q P+ TV ++L + L L E
Sbjct: 339 GEVNVRVGDEWVDMTKPG-PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDE 397
Query: 779 VNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 838
+ ++ + + +++ E + L P + LS +R R+ +A L+ P I+ +DE
Sbjct: 398 L-ARMKAVITLKMVGFDE-EKAEEILDKYP--DELSEGERHRVALAQVLIKEPRIVILDE 453
Query: 839 PTSGLDARAAAVVMRTVRNTVDTGR 863
PT +D + V +++ R
Sbjct: 454 PTGTMD----PITKVDVTHSILKAR 474
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 6e-05
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIH 870
+ LS Q++R++IA L+ +I DEPT LD+ + VM + D G TV+ H
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
Query: 871 QPSI 874
P +
Sbjct: 203 DPQV 206
|
Length = 648 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 6e-05
Identities = 47/213 (22%), Positives = 83/213 (38%), Gaps = 61/213 (28%)
Query: 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLA 720
L+ + +++S ++ VL +S + G AL+G +GSGK+TL+ +L
Sbjct: 1 LSINNVSFSYP----------EQEQQVL-KNLSLELKQGEKIALLGRSGSGKSTLLQLLT 49
Query: 721 GR-KTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVY--ESLLYSAWLRLSS 777
G K + G IT+ G P +S + S ++V L+ LR +
Sbjct: 50 GDLKPQ---QGEITLDGVP--------VSDLEKA---LSSLISVLNQRPYLFDTTLRNN- 94
Query: 778 EVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 837
+G S +R+RL +A L+ + I+ +D
Sbjct: 95 ---------------------------LGRR----FSGGERQRLALARILLQDAPIVLLD 123
Query: 838 EPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIH 870
EPT GLD ++ + V +T++ H
Sbjct: 124 EPTVGLDPITERQLLSLIFE-VLKDKTLIWITH 155
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 7e-05
Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 9/172 (5%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFT 745
+LN +S G + AL+G +GSGKTTL+ ++AG +T G+I + T ++
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD--- 73
Query: 746 RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALV 805
R G+ Q+ ++TV++++ + L + +V +L+E+ L
Sbjct: 74 RKVGFVFQHYALFRHMTVFDNIAFG--LTVLPRRERPNAAAIKAKVTQLLEMVQLAHLAD 131
Query: 806 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN 857
P LS Q++R+ +A L P I+ +DEP LDA+ + R +R
Sbjct: 132 RYPA--QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQ 181
|
Length = 353 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 7e-05
Identities = 65/260 (25%), Positives = 106/260 (40%), Gaps = 67/260 (25%)
Query: 676 MKR-RGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITI 734
M R V K +L +S +F PG ++G+ G+GK+TL+ ++AG
Sbjct: 7 MNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--------F 58
Query: 735 SGYPKNQETFTRISGYCEQNDIHSPYVTVYESL------LYSAWLRLSSEVNSK----TR 784
+G + GY Q P TV E++ + A R +E+++K
Sbjct: 59 NGEARPAPGIKV--GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRF-NEISAKFAEPDA 115
Query: 785 EM--FVEEVMELVEL----------NPLRQALVGL---PG---VNGLSTEQRKRLTIAVE 826
+M + E EL E+ L A+ L P V LS +R+R+ +
Sbjct: 116 DMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRL 175
Query: 827 LVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDAGIPG 886
L++ P ++ +DEPT+ LDA + A + + ++ G TVV H
Sbjct: 176 LLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PG-TVVAVTH---------------- 216
Query: 887 VSKIRDGY---NPATWMLEV 903
D Y N A W+LE+
Sbjct: 217 -----DRYFLDNVAGWILEL 231
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 8e-05
Identities = 44/204 (21%), Positives = 78/204 (38%), Gaps = 49/204 (24%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 748
+ VS R G + + G+ G+G+T L L G R +G I + G
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGA--RPASSGEILLDG------------ 320
Query: 749 GYCEQNDIHSP---------YVT-------------VYESLLYSAWLRLSSE--VNSKTR 784
+ I SP YV + E++ ++ R S ++ +
Sbjct: 321 ---KPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKE 377
Query: 785 EMFVEEVMELVELNP--LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 842
E + + + Q + L G N Q+K + +A L +P ++ +DEPT G
Sbjct: 378 RALAERYIRRLRIKTPSPEQPIGTLSGGN-----QQK-VVLARWLATDPKVLILDEPTRG 431
Query: 843 LDARAAAVVMRTVRNTVDTGRTVV 866
+D A A + R +R G+ ++
Sbjct: 432 IDVGAKAEIYRLIRELAAEGKAIL 455
|
Length = 500 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 9e-05
Identities = 43/202 (21%), Positives = 81/202 (40%), Gaps = 30/202 (14%)
Query: 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG-RKTRGYITGNITISGYPKNQ 741
+ + VS R G + + GV G+G++ L++ ++G RK G I ++G
Sbjct: 268 RRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPAS---GRILLNGKDVLG 324
Query: 742 ETFTRIS-----GYCEQNDIH---SPYVTVYESLL--------YSAWLRLS-SEVNSKTR 784
R Y ++ +++ E+L+ +S L + R
Sbjct: 325 RLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR 384
Query: 785 EMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
E+ +EE ++ +P A LS +++L +A EL P ++ +PT GLD
Sbjct: 385 EL-IEE-FDVRAPSPDAPA-------RSLSGGNQQKLILARELARRPDLLIAAQPTRGLD 435
Query: 845 ARAAAVVMRTVRNTVDTGRTVV 866
A + + D G+ V+
Sbjct: 436 VGAIEFIHERLLELRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 9e-05
Identities = 45/184 (24%), Positives = 75/184 (40%), Gaps = 30/184 (16%)
Query: 680 GVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKT----TLMDVLAGRKTRGYITGNITIS 735
+ + G+S G AL+G +GSGK+ +++ +L + +G+I
Sbjct: 17 HQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAA-AHPSGSILFD 75
Query: 736 G-----YPKNQETFTRISGYCEQNDIH----------SPYVTVYESLLYSAWLRLSSEVN 780
G + Q + G N I +P T+ L LRL ++
Sbjct: 76 GEDLLAASERQ--LRGVRG----NKIGMIFQEPMTSLNPLHTI-GKQLAEV-LRLHRGLS 127
Query: 781 SKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 840
E++ELV + + L P + LS QR+R+ IA+ L P ++ DEPT
Sbjct: 128 RAAARARALELLELVGIPEPEKRLDAYP--HELSGGQRQRVMIAMALANEPDLLIADEPT 185
Query: 841 SGLD 844
+ LD
Sbjct: 186 TALD 189
|
Length = 534 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 9e-05
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 30/173 (17%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVL-------AGRKTRGYITGNITISGYPKNQ 741
L ++ + +TA++G +G GK+T + L K +TG + +G +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVK----LTGEMNYNGSNILK 83
Query: 742 ETFTRIS-----GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE 796
+ G Q P ++++++ Y R+ N K + VE+ ++ V
Sbjct: 84 GKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGP--RIHGTKNKKKLQEIVEKSLKDVA 140
Query: 797 L-----NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
L + L + L G Q++RL IA L NP ++ MDEPTS LD
Sbjct: 141 LWDEVKDRLHTQALSLSG------GQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 9e-05
Identities = 56/209 (26%), Positives = 83/209 (39%), Gaps = 30/209 (14%)
Query: 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG-------RKTRGYITGNITIS 735
D K LN +S + G TAL+G GSGK+T+ ++ G ++ IT+
Sbjct: 17 DSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSK------ITVD 70
Query: 736 GYPKNQETFTRIS---GYCEQN-DIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEV 791
G +T I G QN D TV + + + R V V +V
Sbjct: 71 GITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDV 127
Query: 792 MELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 851
+ V + + LS Q++R+ IA L P II +DE TS LD +
Sbjct: 128 LADVGMLDYIDS-----EPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQI 182
Query: 852 MRTVRN-TVDTGRTVVCTIHQPSIDIFEA 879
++ +R TV+ H DI EA
Sbjct: 183 LKLIRKLKKKNNLTVISITH----DIDEA 207
|
Length = 282 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 42/209 (20%), Positives = 69/209 (33%), Gaps = 59/209 (28%)
Query: 15 SGKVTYNGHDMHE----------FVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGS 64
SG G+D+ VPQ + ++T RE L R G
Sbjct: 47 SGTARVAGYDVVREPRKVRRSIGIVPQYASVDE--------DLTGRENLEMMGRLYG--- 95
Query: 65 RYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGD 124
L + E + + +L++ +L D
Sbjct: 96 -------LPKDEAEERA------------------------EELLELFEL-----GEAAD 119
Query: 125 EMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTAL 184
+ SGG R+R+ L+ LF+DE +TGLD T I + + G +
Sbjct: 120 RPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE--EGVTI 177
Query: 185 ISLLQPAPEVYNLFDDIILVSDGQIVYQG 213
+ E L D I ++ G+I+ +G
Sbjct: 178 LLTTHYMEEADKLCDRIAIIDHGRIIAEG 206
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 46/216 (21%), Positives = 86/216 (39%), Gaps = 46/216 (21%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVP---QRTAAYISQHDIHIGEMTVRETLAFSA 57
+ L G L + G++ NG D+ + P ++ +++SQ+ ++ T+RE +
Sbjct: 364 LNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNP-YLFAGTIRENILL-- 417
Query: 58 RCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVC 117
A D +I + +L+ +
Sbjct: 418 --------------------ARPDASDEEIIAALDQA------------GLLEFVPKPDG 445
Query: 118 ADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNH 177
DTV+G+ G+SGGQ +R+ L+ PA L +DE + LD+ T I+ +L
Sbjct: 446 LDTVIGEGG-AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQAL--QEL 502
Query: 178 ILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213
T L+ + D I+++ +G++V QG
Sbjct: 503 AKQKTVLVITHRLEDAA--DADRIVVLDNGRLVEQG 536
|
Length = 559 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 46/201 (22%), Positives = 73/201 (36%), Gaps = 42/201 (20%)
Query: 15 SGKVTYNGHDMHEFVP--QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVEL 72
SG+ T GHD+ +R + Q E+T E L AR GV
Sbjct: 54 SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA------- 106
Query: 73 SRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISG 132
RRE+ ++ L + L D +++ SG
Sbjct: 107 ERRERIDEL---------------------------LDFVGL-----LEAADRLVKTYSG 134
Query: 133 GQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAP 192
G R+R+ LV LF+DE + GLD T H+ + + T L++
Sbjct: 135 GMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLT-THYME 193
Query: 193 EVYNLFDDIILVSDGQIVYQG 213
E L D + ++ G+I+ +G
Sbjct: 194 EAEQLCDRVAIIDHGRIIAEG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-04
Identities = 49/205 (23%), Positives = 82/205 (40%), Gaps = 42/205 (20%)
Query: 15 SGKVTYNGHDMHEFVPQ---RTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVE 71
G++ +G D+++ R Y+ Q D + ++RE +A +
Sbjct: 527 QGRILLDGVDLNDIDLASLRRQVGYVLQ-DPFLFSGSIRENIALG----------NPEAT 575
Query: 72 LSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGIS 131
+AA++ A F++ L + DT VG E +S
Sbjct: 576 DEEIIEAAQL---AGAHEFIEN--------------------LPMGYDTPVG-EGGANLS 611
Query: 132 GGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPA 191
GGQR+R+ L+ L +DE ++ LD T I+ +L Q IL G +I ++
Sbjct: 612 GGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQ---ILQGRTVI-IIAHR 667
Query: 192 PEVYNLFDDIILVSDGQIVYQGPLE 216
D II++ G+IV QG E
Sbjct: 668 LSTIRSADRIIVLDQGKIVEQGSHE 692
|
Length = 709 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 800 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV 859
LR+ L+ P + LS +++RL A L+ P +F+DE TS LD + + + ++
Sbjct: 80 LREQLI-YPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK--- 135
Query: 860 DTGRTVVCTIHQPSIDIF 877
+ G TV+ H+PS+ F
Sbjct: 136 ELGITVISVGHRPSLWKF 153
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 43/188 (22%)
Query: 692 VSGAFRPGVLTALMGVTGSGKTTLMDVLAG-RKTRGYITGNITISGYPKNQETFTRISGY 750
+S R G + L GV G+G+T L + L G R RG G I + +E I+
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARG---GRIML----NGKE----INAL 330
Query: 751 CEQNDIHSPYVTVYE------------------SLLY---SAWLRLSSEVNSKTREMFVE 789
+ V + E +L + W++ + E + E +
Sbjct: 331 STAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARE--NAVLERYRR 388
Query: 790 EVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 849
+ ++ N QA L G N Q+K L IA L A+P ++ +DEPT G+D A
Sbjct: 389 ALN--IKFNHAEQAARTLSGGN-----QQKVL-IAKCLEASPQLLIVDEPTRGVDVSARN 440
Query: 850 VVMRTVRN 857
+ + +R+
Sbjct: 441 DIYQLIRS 448
|
Length = 510 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 48/171 (28%)
Query: 699 GVLTALMGVTGSGKTTLM-------DVLAGRKTRGYITGNITISG---YPKN---QETFT 745
G +TAL+G +G GK+T++ D++ G + G + G Y E
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS----LKGRVLFDGTDLYDPRVDPVEVRR 94
Query: 746 RISGYCEQNDIHSPY-VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL 804
RI +Q + P+ ++YE++ + A +N T +M ELVE LR+A
Sbjct: 95 RIGMVFQQPN---PFPKSIYENIAFGA------RINGYTGDM-----DELVE-RSLRKAA 139
Query: 805 V-----------GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
V G LS Q++RL IA + P +I MDEP S LD
Sbjct: 140 VWDECKDKLNESG----YSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 1e-04
Identities = 51/182 (28%), Positives = 78/182 (42%), Gaps = 44/182 (24%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT-GNITISGYPKNQE----- 742
+ G+ G L+G +G GK+TL+ ++AG + IT G I I G N+
Sbjct: 20 IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGGRVVNELEPADR 76
Query: 743 ----TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN 798
F QN P+++V E++ Y +R + + R V E ++EL
Sbjct: 77 DIAMVF--------QNYALYPHMSVRENMAYGLKIRGMPKAEIEER---VAEAARILELE 125
Query: 799 PL-----RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAVV 851
PL R+ LS QR+R+ + +V P++ DEP S LDA R
Sbjct: 126 PLLDRKPRE----------LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQ--- 172
Query: 852 MR 853
MR
Sbjct: 173 MR 174
|
Length = 356 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 38/173 (21%)
Query: 701 LTALMGVTGSGKTTLM---DVLAGRKTRGYITGNITISGYPKNQ----------ETFTRI 747
+TAL+G +G GK+T + + + + G I + +P N E RI
Sbjct: 44 VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL--HPDNVNILSPEVDPIEVRMRI 101
Query: 748 SGYCEQNDIHSPY-VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALV- 805
S ++ + P+ +++E++ Y +R R +EE +E N LR A +
Sbjct: 102 SMVFQKPN---PFPKSIFENVAYGLRIR------GVKRRSILEERVE----NALRNAALW 148
Query: 806 -------GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 851
G N LS Q++RL IA L +P I+ DEPTS LD A A +
Sbjct: 149 DEVKDRLGDLAFN-LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASI 200
|
Length = 265 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 44/204 (21%), Positives = 86/204 (42%), Gaps = 50/204 (24%)
Query: 15 SGKVTYNGHDMHEFVP--QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVEL 72
SG + +G D+ + +R Y+ Q TVRE L + A +G+ S+
Sbjct: 53 SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSK------- 105
Query: 73 SRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISG 132
KA D +L++++L + + +SG
Sbjct: 106 --EVKAR-------------------------VDEVLELVNL-----GDRAKKKIGSLSG 133
Query: 133 GQRKRVTTGEMLVGPAHALFMDEISTGLD--SSTTF-HIVNSLGQFNHILNGTALISLLQ 189
G R+RV + LVG L +DE + GLD F ++++ LG+ ++ T ++
Sbjct: 134 GMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVE--- 190
Query: 190 PAPEVYNLFDDIILVSDGQIVYQG 213
+V +L + + +++ G++V++G
Sbjct: 191 ---DVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 131 SGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQP 190
SGGQ++RV L+ + DE LD +++ +++ L + N T ++SL Q
Sbjct: 146 SGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV 205
Query: 191 APEVYNL----FDDIILVSDGQIVYQGP 214
+L D I+ + DG+IV+ GP
Sbjct: 206 -----DLAREYADRIVGLKDGRIVFDGP 228
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 41/187 (21%), Positives = 83/187 (44%), Gaps = 14/187 (7%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN-----QET 743
++ VS + R G + + G+ G+G+T L+ L G G GN+ I+G P + Q
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFG-AYPGKFEGNVFINGKPVDIRNPAQAI 334
Query: 744 FTRISGYCEQNDIHS--PYVTVYESLLYSAWLRLS--SEVNSKTREMFVEEVMELVELNP 799
I+ E H P + V +++ S +++ + ++ +++
Sbjct: 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKV-- 392
Query: 800 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV 859
+ A LP + LS +++ +A L+ NP ++ +DEPT G+D A + + +
Sbjct: 393 -KTASPFLP-IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLA 450
Query: 860 DTGRTVV 866
G ++
Sbjct: 451 QEGVAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-04
Identities = 48/212 (22%), Positives = 83/212 (39%), Gaps = 41/212 (19%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNIT-ISGYPKNQETFTRI 747
L+ VS G A++G TGSGKTT ++ L TG I I KN++
Sbjct: 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD--TGTIEWIFKDEKNKKKTKEK 80
Query: 748 SGYCEQNDIHSPYV---------------------------TVYESLLYSAWLRLSSEVN 780
E+ I T+ + +++ +S V+
Sbjct: 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGP---VSMGVS 137
Query: 781 SKTREMFVEEVMELVEL--NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 838
+ + + +ELV L + L+++ L G Q++R+ +A L P + DE
Sbjct: 138 KEEAKKRAAKYIELVGLDESYLQRSPFELSG------GQKRRVALAGILAMEPDFLVFDE 191
Query: 839 PTSGLDARAAAVVMRTVRNTVDTGRTVVCTIH 870
PT+GLD + ++ N G+T++ H
Sbjct: 192 PTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 20/156 (12%)
Query: 701 LTALMGVTGSGKTT-------LMDVLAGRKTRG---YITGNITISGYPKNQETFTRISGY 750
+TA++G +G GK+T +++++ KT G Y NI Y +E T +
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV-EELRTNVGMV 110
Query: 751 CEQNDIHSPY-VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL-NPLRQALVGLP 808
++ + P+ ++Y+++ Y ++ + KT + VE+ + + + L+ L
Sbjct: 111 FQKPN---PFPKSIYDNVTYGP--KIHGIKDKKTLDEIVEKSLRGAAIWDELKDRL--HD 163
Query: 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
GLS Q++RL IA L P +I MDEPTS LD
Sbjct: 164 NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 26/208 (12%)
Query: 675 EMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLM---DVLAGRKTRGYITGN 731
E K H +L+ + G + ++G +GSGK+TL+ + L + I
Sbjct: 3 EFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDG 62
Query: 732 ITISGYPKNQETFTRI-SGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEE 790
+ ++ PK E R +G Q P++T E++++ V ++E ++
Sbjct: 63 LKVND-PKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGP-----LRVRGASKEEAEKQ 116
Query: 791 VMELVELNPLRQALVGL-------PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 843
EL+ A VGL P + LS Q++R+ IA L P ++ DEPTS L
Sbjct: 117 ARELL-------AKVGLAERAHHYP--SELSGGQQQRVAIARALAVKPKLMLFDEPTSAL 167
Query: 844 DARAAAVVMRTVRNTVDTGRTVVCTIHQ 871
D V++ +++ + G T+V H+
Sbjct: 168 DPELRHEVLKVMQDLAEEGMTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 2e-04
Identities = 50/219 (22%), Positives = 93/219 (42%), Gaps = 34/219 (15%)
Query: 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK--NQ 741
D +L GVS +TA++G +G GK+T + L + + + G + NQ
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCL---NRMNELESEVRVEGRVEFFNQ 74
Query: 742 ETFTR---ISGYCEQNDIHSPY-----VTVYESLLYSAWL---RLSSEVNSKTREMFVEE 790
+ R ++ Q + P ++VY+++ Y + R E++ VE
Sbjct: 75 NIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDD-----IVES 129
Query: 791 VMELVEL-----NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 845
++ +L + + ++ + L G Q++RL IA L P ++ MDEP GLD
Sbjct: 130 ALKDADLWDEIKHKIHKSALDLSG------GQQQRLCIARALAVKPKVLLMDEPCFGLDP 183
Query: 846 RAAAVVMRTVRN-TVDTGRTVVCTIHQ-PSIDIFEAFDA 882
A+ V +++ + + T+V H + F A
Sbjct: 184 IASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTA 222
|
Length = 261 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 849
GLS Q++RL +A L P I+ +DEPTS LD +A A
Sbjct: 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219
|
Length = 286 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 2e-04
Identities = 40/176 (22%), Positives = 81/176 (46%), Gaps = 18/176 (10%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRI 747
+L+G+S P ++G TG+GK+++++ L + G I I + T
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF--RIVELEKGRIMIDDCDVAKFGLT-- 1306
Query: 748 SGYCEQNDIHSPYVTVYES-LLYSAWLRLSSEVNSKTREMFVEEVMELVEL-NPLRQALV 805
D+ + +S +L+S +R + + S+ + + E +E + + + +
Sbjct: 1307 -------DLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPF 1359
Query: 806 GL-----PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVR 856
GL G S QR+ L++A L+ I+ +DE T+ +D R +++ RT+R
Sbjct: 1360 GLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415
|
Length = 1495 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 46/181 (25%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLM-------DVLAGRKTRGYITGNITISGYPKNQ 741
+ G+ F +TAL+G +GSGK+T + D + + +TG I G N+
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIAR----VTGQILYRGIDINR 91
Query: 742 ETFTRISGYCEQNDIH------SPYV-TVYESLLYSAWLRLSSEVNSKTREMFVEEVMEL 794
+ I+ Y + I +P+ ++YE++ ++ L + + K + E+
Sbjct: 92 K---EINVYEMRKHIGMVFQRPNPFAKSIYENITFA--LERAGVKDKK-------VLDEI 139
Query: 795 VELNPLRQALV-----------GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 843
VE L+QA + L LS Q++RL IA + P I+ MDEP S L
Sbjct: 140 VE-TSLKQAALWDQVKDDLHKSAL----TLSGGQQQRLCIARAIAVKPDILLMDEPASAL 194
Query: 844 D 844
D
Sbjct: 195 D 195
|
Length = 267 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 789 EEVMELVELNPLRQALVGLPGVN--------GLSTEQRKRLTIAVELVANPSIIFMDEPT 840
+ ELVE LRQA + VN GLS Q++RL IA L +P +I MDEP
Sbjct: 171 DAEDELVE-RSLRQAAL-WDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPA 228
Query: 841 SGLDARAAA 849
S LD A +
Sbjct: 229 SALDPIATS 237
|
Length = 305 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-04
Identities = 62/210 (29%), Positives = 96/210 (45%), Gaps = 31/210 (14%)
Query: 682 HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT---GNITISGYP 738
DD LVL N ++ + AL+G TGSGK+TL +L G Y G I + G P
Sbjct: 351 RDDNLVLQN-INLSVPSRGFVALVGHTGSGKSTLASLLMG-----YYPLTEGEIRLDGRP 404
Query: 739 KNQ--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE 796
+ + R Q D P V + ++ L A + L ++ E V + +E V+
Sbjct: 405 LSSLSHSVLRQGVAMVQQD---P-VVLADTFL--ANVTLGRDI----SEEQVWQALETVQ 454
Query: 797 LNPLRQAL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 849
L L ++L +G G N LS Q++ L +A LV P I+ +DE T+ +D+
Sbjct: 455 LAELARSLPDGLYTPLGEQG-NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQ 513
Query: 850 VVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 879
+ + + V T+V H+ S I EA
Sbjct: 514 AIQQALA-AVREHTTLVVIAHRLST-IVEA 541
|
Length = 592 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 3e-04
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 14/110 (12%)
Query: 108 ILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFH 167
L++L L AD + +SGG+R+RV L L +DE ++ LD +
Sbjct: 81 ALELLGLAHLADRPFNE-----LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIE 135
Query: 168 IVNSLGQFNHILNGTALISLLQPAPEVYNL----FDDIILVSDGQIVYQG 213
++ L + T ++ L NL D +IL+ DG+IV QG
Sbjct: 136 LLELLRRLARERGKTVVMVLHDL-----NLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 131 SGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQP 190
SGGQ++RV LV + DE LD + +++ L N T +++L Q
Sbjct: 149 SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ- 207
Query: 191 APEVYNLFDDIILVSDGQIVYQGPLEHVEQFFI 223
D II + G+IV+ GP + +
Sbjct: 208 VDLAKKYADRIIGLKAGRIVFDGPASELTDEAL 240
|
Length = 258 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 54/199 (27%), Positives = 88/199 (44%), Gaps = 19/199 (9%)
Query: 15 SGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSR 74
SGK T +VP+ + HD+ + + A+ R GV + ++L S
Sbjct: 39 SGKSTLTKLIQRFYVPENGRVLVDGHDLALAD------PAWLRRQVGVVLQENVLFNRSI 92
Query: 75 REKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQ 134
R+ A P ++ ++A G D+I + L DT+VG E G+SGGQ
Sbjct: 93 RDNIALADPGMSMERVIEAAKLAGAH-----DFISE---LPEGYDTIVG-EQGAGLSGGQ 143
Query: 135 RKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEV 194
R+R+ L+ L DE ++ LD + I+ ++ + I G +I + V
Sbjct: 144 RQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNM---HDICAGRTVIIIAHRLSTV 200
Query: 195 YNLFDDIILVSDGQIVYQG 213
N D II++ G+IV QG
Sbjct: 201 KNA-DRIIVMEKGRIVEQG 218
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 48/203 (23%), Positives = 87/203 (42%), Gaps = 26/203 (12%)
Query: 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG--------- 736
L +L+G++ + G AL+G +GSGK+T++ +L G I + G
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILM--TLEPIDEGQIQVEGEQLYHMPGR 70
Query: 737 ----YPKNQETFTRIS---GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVE 789
P +++ ++ G Q+ P+ TV +++ + L V R +
Sbjct: 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVL-----VLGMARAEAEK 125
Query: 790 EVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 849
MEL+++ L +P LS Q++R+ IA L P ++ DE TS LD
Sbjct: 126 RAMELLDMVGLADKADHMPA--QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVG 183
Query: 850 VVMRTVRN-TVDTGRTVVCTIHQ 871
V+ +R + T++ H+
Sbjct: 184 EVLNVIRRLASEHDLTMLLVTHE 206
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 3e-04
Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 37/177 (20%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG---YPKNQETFT 745
LNG++ + G L A++G G GK++L+ L + + G++ + G Y Q
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVHMKGSVAYVPQQAWI- 710
Query: 746 RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL- 804
QND ++ E++L+ L E + ++V+E L P + L
Sbjct: 711 -------QND------SLRENILFGKALN----------EKYYQQVLEACALLPDLEILP 747
Query: 805 ------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTV 855
+G GVN LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 748 SGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHV 803
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIH 870
LS Q++RL IA + +P +I MDEP S LD A + + + + TVV H
Sbjct: 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 20/170 (11%)
Query: 686 LVL-LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--RGYI---TGNITISGYPK 739
LVL ++ S G + LMG++GSGK+TL+ + G RG + G+ ++
Sbjct: 36 LVLGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANC 95
Query: 740 NQETF-----TRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMEL 794
+ T R+S +Q + P+ TV E++ + L + + R V+E +EL
Sbjct: 96 DAATLRRLRTHRVSMVFQQFAL-LPWRTVEENVAFG--LEMQG-MPKAERRKRVDEQLEL 151
Query: 795 VELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
V L G LS ++R+ +A I+ MDEP S LD
Sbjct: 152 VGLAQWADRKPG-----ELSGGMQQRVGLARAFATEAPILLMDEPFSALD 196
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 3e-04
Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 29/159 (18%)
Query: 699 GVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG----YPKNQETFTRISGYCEQN 754
G TA++G G GK+TL+ L+ T G++ + G + ++E RI G QN
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASKEVARRI-GLLAQN 89
Query: 755 DIHSPYVTVYESL---------LYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALV 805
+TV E + L++ W K E V + M+ + L
Sbjct: 90 ATTPGDITVQELVARGRYPHQPLFTRW--------RKEDEEAVTKAMQATGITHL----- 136
Query: 806 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
V+ LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 137 ADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 4e-04
Identities = 51/220 (23%), Positives = 84/220 (38%), Gaps = 57/220 (25%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAA-------YISQHDIHIGEMTVRETL 53
+L L G LD SG+V NG D+ + + A ++ Q+ + ++TV E +
Sbjct: 47 LLNLLGGLDK--PTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENV 104
Query: 54 AFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLD 113
G + RR++AA+ +L+VL
Sbjct: 105 ELPLLIAGKSAG--------RRKRAAE--------------------------ELLEVLG 130
Query: 114 LDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG-LDSSTTFHIVNSL 172
L+ E+ SGGQ++RV L+ + DE TG LDS T ++ L
Sbjct: 131 LEDRLLKKKPSEL----SGGQQQRVAIARALINNPKIILADEP-TGNLDSKTAKEVLELL 185
Query: 173 GQFNHILNGTALISLLQPA---PEVYNLFDDIILVSDGQI 209
+ N T ++ PE+ D +I + DG+I
Sbjct: 186 RELNKERGKTIIM-----VTHDPELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 26/100 (26%), Positives = 46/100 (46%)
Query: 114 LDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLG 173
L++ + D +S G+++RV LV L +DE + GLD ++N L
Sbjct: 156 LELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLE 215
Query: 174 QFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213
+ AL+ + A E+ F +L+ +G++V QG
Sbjct: 216 ELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 4e-04
Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 22/169 (13%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLM-------DVLAGRKTRGYIT-GNITISGYPKN 740
+N +S +TAL+G +G GK+T + D++ ++ G I + I N
Sbjct: 37 VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96
Query: 741 QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL--- 797
R G Q P ++Y ++ ++ L+ + E + VEE + L
Sbjct: 97 VVNLRREIGMVFQKPNPFPK-SIYNNITHA--LKYAGERRKSVLDEIVEESLTKAALWDE 153
Query: 798 --NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
+ L + + L G Q++RL IA L P+++ +DEP S LD
Sbjct: 154 VKDRLHSSALSLSG------GQQQRLCIARTLAMKPAVLLLDEPASALD 196
|
Length = 268 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 14/187 (7%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFT 745
L GV+ RPG + L G +G+GK+TL+ ++ G R + G I I+ + F
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 746 RIS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL-NPLRQA 803
R G Q+ TVY+++ + +S + + R V ++ V L + +
Sbjct: 78 RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRR---VSAALDKVGLLDKAKNF 134
Query: 804 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGR 863
+ L G +++R+ IA +V P+++ DEPT LD + ++R G
Sbjct: 135 PIQLSG------GEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGV 188
Query: 864 TVVCTIH 870
TV+ H
Sbjct: 189 TVLMATH 195
|
Length = 222 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 4e-04
Identities = 42/189 (22%), Positives = 77/189 (40%), Gaps = 25/189 (13%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTR 746
L +S G ++G G+GK+TL+ ++AG + T +G + ++G +
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT----SGKVKVTG---------K 89
Query: 747 ISGYCEQNDIHSPYVTVYESL-LYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALV 805
++ E P +T E++ L L L+ + + V+E++E EL
Sbjct: 90 VAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDE----KVDEIIEFAELGDFID--- 142
Query: 806 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTV 865
P V S+ RL +V P I+ +DE + DA + + V+ +T+
Sbjct: 143 -QP-VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTI 200
Query: 866 VCTIHQPSI 874
V H
Sbjct: 201 VLVSHDLGA 209
|
Length = 249 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 4e-04
Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 23/162 (14%)
Query: 692 VSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFTRIS 748
VS G + AL+G +G GK+TL+ +LAG + T G I + +S P Q +
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMF 97
Query: 749 GYCEQNDIHSPYVTVYESLLYS-AWLRLS-SEVNSKTREMFVEEVMELVELNPL--RQAL 804
Q+ P++TV +++ + +L +E+ S+ V E++ LV + R+
Sbjct: 98 ----QSYALFPHMTVEQNIAFGLKQDKLPKAEIASR-----VNEMLGLVHMQEFAKRKP- 147
Query: 805 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 846
+ LS QR+R+ +A L P ++ +DEP LD +
Sbjct: 148 ------HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKK 183
|
Length = 377 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 5e-04
Identities = 49/213 (23%), Positives = 88/213 (41%), Gaps = 25/213 (11%)
Query: 687 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTR 746
+L G+ G + AL+G G+GK+TLM ++AG +G + I G P + T +
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNPCARLTPAK 82
Query: 747 ISGY----CEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMEL-VELNPLR 801
Q + P ++V E++L+ L S + + + L +L+
Sbjct: 83 AHQLGIYLVPQEPLLFPNLSVKENILF----GLPKRQASMQK--MKQLLAALGCQLDLDS 136
Query: 802 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT 861
A L R+ + I L+ + I+ +DEPT+ L + +R +
Sbjct: 137 SA-------GSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQ 189
Query: 862 GRTVVCTIHQPSIDIFEAFDAGIPGVSKIRDGY 894
G +V H+ +I + D +S +RDG
Sbjct: 190 GVGIVFISHKLP-EIRQLADR----ISVMRDGT 217
|
Length = 510 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 5e-04
Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 28/179 (15%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK--------- 739
+ G+S +TA++G +G GK+T + L R + + G + + G
Sbjct: 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTL-NRISE--LEGPVKVEGVVDFFGQNIYDP 79
Query: 740 --NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL 797
N R G Q P +++YE++ Y +R+S+++ + VE ++ L
Sbjct: 80 RININRLRRQIGMVFQRPNPFP-MSIYENVAYG--VRISAKLPQADLDEIVESALKGAAL 136
Query: 798 -----NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 851
+ L ++ +GL G Q++RL IA L P ++ MDEP S LD A V
Sbjct: 137 WQEVKDKLNKSALGLSG------GQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKV 189
|
Length = 259 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 5e-04
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 802 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN 857
+ LVG + LS Q++R++IA ++ NP I+ +DE TS LD ++ +V +T+ N
Sbjct: 570 ETLVG-SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINN 624
|
Length = 1466 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 7e-04
Identities = 51/227 (22%), Positives = 90/227 (39%), Gaps = 51/227 (22%)
Query: 15 SGKVTYNGHDMHEFVPQ-RTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELS 73
SG++ +G D+ + P+ R A + Q+ MTV E +AF + +GV
Sbjct: 57 SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGV----------- 105
Query: 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGG 133
P A+ID V+E + K+L L+ + +SGG
Sbjct: 106 ---------PKAEID----KRVKE----------VAKLLGLEHLLNRKP-----LQLSGG 137
Query: 134 QRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPE 193
QR+RV LV +DE + LD+ + + + + + L T + E
Sbjct: 138 QRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-E 196
Query: 194 VYNLFDDIILVSDGQIVYQGPLEHVEQFFISMG-FKCPKRKGIADFL 239
L D I++++DG+I +Q + ++ P +A F+
Sbjct: 197 AMTLADRIVVMNDGRI---------QQVGTPLELYERPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 7e-04
Identities = 47/205 (22%), Positives = 81/205 (39%), Gaps = 41/205 (20%)
Query: 15 SGKVTYNGHDM-HEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELS 73
SG++ NG D R ++ QH +TVR+ +AF +E+
Sbjct: 54 SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFG-------------LEIR 100
Query: 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGG 133
+ KA KA V E +L+++ L +GD +SGG
Sbjct: 101 KHPKAKI-----------KARVEE----------LLELVQL-----EGLGDRYPNQLSGG 134
Query: 134 QRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPE 193
QR+RV L L +DE LD+ + + L + + ++ T + + E
Sbjct: 135 QRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVF-VTHDQEE 193
Query: 194 VYNLFDDIILVSDGQIVYQGPLEHV 218
+ D I+++S+G+I G + V
Sbjct: 194 AMEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 7e-04
Identities = 54/226 (23%), Positives = 80/226 (35%), Gaps = 59/226 (26%)
Query: 693 SGAFRPG-VLTALMGVTGSGKTTLMDVLAGR--KTRGYITGNITISGYPKNQETFTRISG 749
G G V+ + G G GKTT +LAG G + + IS Y K Q I
Sbjct: 359 GGEIYEGEVIGIV-GPNGIGKTTFAKLLAGVLKPDEGEVDPELKIS-Y-KPQ----YIKP 411
Query: 750 YCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPG 809
TV + LL S L S + E+++ ++L L V
Sbjct: 412 --------DYDGTVED-LLRSITDDLGSS-------YYKSEIIKPLQLERLLDKNV---- 451
Query: 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTI 869
LS + +R+ IA L + + +DEP++ LD V + +R + +
Sbjct: 452 -KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVV 510
Query: 870 -HQPSIDI------------FEAFDAGIPGVS-------KIRDGYN 895
H DI FE G PG +R+G N
Sbjct: 511 DH----DIYMIDYISDRLMVFE----GEPGKHGHASGPMDMREGMN 548
|
Length = 590 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 7e-04
Identities = 36/183 (19%), Positives = 55/183 (30%), Gaps = 61/183 (33%)
Query: 698 PGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIH 757
PG + ++G GSGKTTL LA I G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARE--------------LGPPGGGVIYIDG-------- 38
Query: 758 SPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 817
E +EEV++ ++ S E
Sbjct: 39 ---------------------------EDILEEVLD------QLLLIIVGGKKASGSGEL 65
Query: 818 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD------TGRTVVCTIHQ 871
R RL +A+ P ++ +DE TS LDA A+++ + TV+ T +
Sbjct: 66 RLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125
Query: 872 PSI 874
Sbjct: 126 EKD 128
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 7e-04
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 130 ISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQ 189
ISGGQ++R+ L+ + L +DE ++ LD+ T IVN+L I +
Sbjct: 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQD-----KTIIFVA 666
Query: 190 PAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219
V D II++ G+I+ QG H E
Sbjct: 667 HRLSVAKQSDKIIVLDHGKIIEQG--SHDE 694
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 8e-04
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV-DTGRTVVCTIHQ 871
LS +++R+ +A +L P + DEPT LD + A +V + V +G ++V T H
Sbjct: 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228
Query: 872 PSI 874
P +
Sbjct: 229 PEV 231
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 131 SGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQP 190
SGGQ++RV LV L +DE G+D T I L + G ++ +
Sbjct: 134 SGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELR--REGMTILVVTHD 191
Query: 191 APEVYNLFDDIILVSDGQIVYQG 213
V FD ++L+ + +V G
Sbjct: 192 LGLVLEYFDRVLLL-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 41/233 (17%), Positives = 78/233 (33%), Gaps = 55/233 (23%)
Query: 14 ASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGE--MTVRETLAFSARCQGVGSRYDMLVE 71
+SG++ G + + + Y+ Q +TV++ + G +
Sbjct: 57 SSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLL-----GRYGKKGWFRR 111
Query: 72 LSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRG-- 129
L++++K + + L+ VG E LR
Sbjct: 112 LNKKDKEK----------------------------VDEALER-------VGMEDLRDRQ 136
Query: 130 ---ISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALIS 186
+SGGQ++RV L L +DE TG+D + I + L + G ++
Sbjct: 137 IGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--EGKTVLM 194
Query: 187 L---LQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIA 236
+ L FD +I ++ I P E + + + F +A
Sbjct: 195 VTHDLGLVMA---YFDRVICLNRHLIASGPPEEVLTEENLEKAFGGSLAHALA 244
|
Length = 254 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 51/227 (22%), Positives = 78/227 (34%), Gaps = 68/227 (29%)
Query: 5 AGK------LDSSLKAS-GKVTYNGHDMHE----------FVPQRTAAYISQHDIHIGEM 47
AGK L L+ G T +G D+ + FV T Y +
Sbjct: 42 AGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLY--------DRL 93
Query: 48 TVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDY 107
T RE L + A G+ +G E +
Sbjct: 94 TARENLEYFAGLYGL----------------------------------KGDELTARLEE 119
Query: 108 ILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLV-GPAHALFMDEISTGLDSSTTF 166
+ L ++ D VG G S G R++V LV P L DE +TGLD T
Sbjct: 120 LADRLGMEELLDRRVG-----GFSTGMRQKVAIARALVHDPPVLLL-DEPTTGLDVMATR 173
Query: 167 HIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213
+ + Q + G ++ EV L D ++++ G++VY+G
Sbjct: 174 ALREFIRQLRAL--GKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.001
Identities = 46/214 (21%), Positives = 79/214 (36%), Gaps = 44/214 (20%)
Query: 15 SGKVTYNGHDMHEFVPQRTAAY-IS---QHDIHI-GEMTVRETLAFSARCQGVGSRYDML 69
SG V + G D+ P R A I+ Q + +TV E +A A + S
Sbjct: 58 SGTVIFRGRDITGLPPHRIARLGIARTFQI-TRLFPGLTVLENVAVGAHARLGLSG---- 112
Query: 70 VELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRG 129
+ +E +EA +L+ + L AD G+
Sbjct: 113 ------------------LLGRPRARKEEREARERARELLEFVGLGELADRPAGN----- 149
Query: 130 ISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALI---- 185
+S GQ++R+ L L +DE + GL+ T + + + T L+
Sbjct: 150 LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHD 209
Query: 186 -SLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218
L V L D I++++ G+++ +G E V
Sbjct: 210 MKL------VMGLADRIVVLNYGEVIAEGTPEEV 237
|
Length = 250 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Query: 121 VVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILN 180
D +SGG RKRV + LF+DE ++GLD + I + + N L
Sbjct: 137 AAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALG 196
Query: 181 GTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220
T ++ + + + D + +++DG+++ +G E +
Sbjct: 197 LTVIM-VTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235
|
Length = 263 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.001
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 16/98 (16%)
Query: 131 SGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALI----- 185
SGG R+RV L L DE +T LD + I++ L + GTALI
Sbjct: 155 SGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREK-GTALILITHD 213
Query: 186 -SLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFF 222
+ V + D + ++ G+IV +GP VE+ F
Sbjct: 214 LGV------VAEIADRVAVMYAGRIVEEGP---VEEIF 242
|
Length = 316 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 0.001
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 16/93 (17%)
Query: 129 GISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALI--- 185
+SGGQR+R+ LV L DE ++ LD+ T + SL + L T ++
Sbjct: 588 TLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLER----LKVTRIVIAH 643
Query: 186 --SLLQPAPEVYNLFDDIILVSDGQIVYQGPLE 216
S ++ A D I ++ G++V QG +
Sbjct: 644 RLSTIRNA-------DRIYVLDAGRVVQQGTYD 669
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.001
Identities = 53/227 (23%), Positives = 88/227 (38%), Gaps = 43/227 (18%)
Query: 693 SGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTRISGY 750
G G + ++G G GKTT + +LAG + G ++ +S Y K Q G
Sbjct: 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEE-DLKVS-Y-KPQYISPDYDG- 416
Query: 751 CEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGV 810
TV + L + S S F E+++ + L L + V
Sbjct: 417 -----------TVEDLL----RSAIRSAFGS---SYFKTEIVKPLNLEDLLERPV----- 453
Query: 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTI 869
+ LS + +R+ IA L + +DEP++ LD +V + +R ++ +T +
Sbjct: 454 DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVD 513
Query: 870 HQPSI-----DIFEAFDAGIPGVS-------KIRDGYNPATWMLEVT 904
H + D F+ G PG +R+G N L VT
Sbjct: 514 HDIYMIDYVSDRLIVFE-GEPGKHGHASPPMSMREGMNRFLKNLGVT 559
|
Length = 591 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 36/160 (22%)
Query: 702 TALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETFTRISGYCEQNDIHS 758
T ++G++GSGK+TL +L G +G I ++G+ T + Y Q
Sbjct: 503 TTIVGMSGSGKSTLAKLLVGFFQAR--SGEILLNGFSLKDIDRHTLRQFINYLPQE---- 556
Query: 759 PYV---TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815
PY+ ++ E+LL A + +E+ E+ ++ + +P G T
Sbjct: 557 PYIFSGSILENLLLGA--------KENVSQ---DEIWAACEIAEIKDDIENMP--LGYQT 603
Query: 816 E-----------QRKRLTIAVELVANPSIIFMDEPTSGLD 844
E Q++R+ +A L+ + ++ +DE TS LD
Sbjct: 604 ELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLD 643
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN 857
LS Q++RL IA + P+++ MDEP S LD A V+ ++
Sbjct: 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE 194
|
Length = 251 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.001
Identities = 51/190 (26%), Positives = 79/190 (41%), Gaps = 24/190 (12%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG---YPKNQETFT 745
LNGVS + G +++G GSGK+T ++ G G + I G +N
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE--FEGKVKIDGELLTAENVWNLR 80
Query: 746 RISGYCEQN-DIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVME-LVELNPL--- 800
R G QN D TV + + + E RE ++ V E L+ +N L
Sbjct: 81 RKIGMVFQNPDNQFVGATVEDDVAFGM------ENQGIPREEMIKRVDEALLAVNMLDFK 134
Query: 801 -RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV 859
R+ LS Q++R+ +A + P II +DE TS LD +MR +
Sbjct: 135 TREPA-------RLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIK 187
Query: 860 DTGRTVVCTI 869
+ + V +I
Sbjct: 188 EKYQLTVLSI 197
|
Length = 277 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 42/194 (21%), Positives = 80/194 (41%), Gaps = 23/194 (11%)
Query: 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQE 742
+ +L +S + PG L+G TGSGK+TL+ G+I I G N
Sbjct: 14 EGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGDIQIDGVSWNSV 70
Query: 743 TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQ 802
Q + V + ++S R + + K + EE+ ++ E L+
Sbjct: 71 PL--------QKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSD---EEIWKVAEEVGLKS 119
Query: 803 ALVGLPG------VNG---LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMR 853
+ PG V+G LS ++ + +A +++ I+ +DEP++ LD V+ +
Sbjct: 120 VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRK 179
Query: 854 TVRNTVDTGRTVVC 867
T++ ++
Sbjct: 180 TLKQAFADCTVILS 193
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 43/164 (26%), Positives = 63/164 (38%), Gaps = 39/164 (23%)
Query: 3 ALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYIS--QHDIHIGEMTVRETLAFSARCQ 60
LAG LD G+VT +G + +S D H+ + TVRE L +
Sbjct: 380 TLAGLLDPL---QGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLAR--- 433
Query: 61 GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADT 120
PDA + A+ R G D++ L DT
Sbjct: 434 ----------------------PDATDEELWAALERVGLA-----DWLR---ALPDGLDT 463
Query: 121 VVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSST 164
V+G E +SGG+R+R+ L+ A L +DE + LD+ T
Sbjct: 464 VLG-EGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAET 506
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.002
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 131 SGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTAL-ISLLQ 189
SGGQR+RV L L +DE + LD S ++N L L T L IS
Sbjct: 431 SGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISH-- 488
Query: 190 PAPEVYNLFDDIILVSDGQIVYQGPLEHVEQF 221
V + D + ++ DG+IV +GP E V +
Sbjct: 489 DLAVVRYIADRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 119 DTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHI 178
+T VG E +SGGQR+R+ LVG L DE ++ LD + I+ ++ I
Sbjct: 584 NTEVG-EKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNM---REI 639
Query: 179 LNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213
G +I + V D II++ GQI G
Sbjct: 640 CRGRTVIIIAHRLSTVRAC-DRIIVLEKGQIAESG 673
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.002
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 130 ISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQ 189
+SGGQ++RV L L DE ++ LD TT I+ L N L T ++ +
Sbjct: 141 LSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHE 200
Query: 190 PAPEVYNLFDDIILVSDGQIVYQGPLEHV 218
V + D + ++ G++V +G +E V
Sbjct: 201 -MEVVKRICDRVAVMEKGEVVEEGTVEEV 228
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 37/184 (20%)
Query: 675 EMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNI 732
+++ G +LN +S + R G + G +G GK+TL+ ++A T G +
Sbjct: 9 QLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEG 68
Query: 733 T-ISGYPKNQETFTRISGYCEQNDIHSPYV---TVYESLLYSAWLRLSSEVNSKTREM-- 786
IS E + + YC Q +P + TVY++L++ +R ++ +
Sbjct: 69 EDISTLKP--EIYRQQVSYCAQ----TPTLFGDTVYDNLIFPWQIR------NQQPDPAI 116
Query: 787 FVEEVMELVELNPLRQALVGLP------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 840
F++++ LP + LS +++R+++ L P ++ +DE T
Sbjct: 117 FLDDLERF-----------ALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEIT 165
Query: 841 SGLD 844
S LD
Sbjct: 166 SALD 169
|
Length = 225 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 19/161 (11%)
Query: 692 VSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYC 751
+S R G A++G GSGK+TL +LAG +G + I +P + + Y
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAG--MIEPTSGELLIDDHPLHFGDY----SYR 85
Query: 752 EQNDIHSPYVTVYESL--------LYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQA 803
Q I + SL + LRL++++ + RE + E + V L L
Sbjct: 86 SQR-IRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGL--LPDH 142
Query: 804 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
P + L+ Q++RL +A L+ P +I DE + LD
Sbjct: 143 ASYYP--HMLAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 49/164 (29%), Positives = 72/164 (43%), Gaps = 38/164 (23%)
Query: 701 LTALMGVTGSGKTTLM-------DVLAGRKTRGYIT--GNITISGYPKNQETFTRISGYC 751
+TA +G +G GK+T++ D++ G + G +T G + E RI G
Sbjct: 38 ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRI-GMV 96
Query: 752 EQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALV------ 805
Q P ++Y+++ Y A +N +M ELVE LRQA +
Sbjct: 97 FQKPNPFPK-SIYDNIAYGA------RINGYKGDM-----DELVE-RSLRQAALWDEVKD 143
Query: 806 -----GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
GL LS Q++RL IA + P +I MDEP S LD
Sbjct: 144 KLKQSGL----SLSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
|
Length = 264 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.002
Identities = 49/191 (25%), Positives = 91/191 (47%), Gaps = 30/191 (15%)
Query: 672 MPQEMKRRGVH--DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLM-------DVLAGR 722
M ++K RGV+ K +L ++ F +TA++G +G GK+TL+ D+++G
Sbjct: 1 MDPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 723 KTRGYI---TGNITISGYPKNQETFT---RISGYCEQNDIHSPY-VTVYESLLYSAWLRL 775
+ G + NI Y N + R+ +Q + P+ ++++++ + + L
Sbjct: 61 RLEGAVLLDNENI----YSPNLDVVNLRKRVGMVFQQPN---PFPKSIFDNVAFGPRM-L 112
Query: 776 SSEVNSKTREMFVEEVMELVELNPLRQAL--VGLPGVNGLSTEQRKRLTIAVELVANPSI 833
+ S+ E+ + + + + ++ L GL LS Q++RL IA L P +
Sbjct: 113 GTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGL----ALSGGQQQRLCIARVLAIEPEV 168
Query: 834 IFMDEPTSGLD 844
I MDEP S LD
Sbjct: 169 ILMDEPCSALD 179
|
Length = 251 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 47/195 (24%), Positives = 83/195 (42%), Gaps = 29/195 (14%)
Query: 672 MPQEMKRRGVH-DDKLVLLNGVSGAFRPGVLTALMGVTGSGKT----TLMDVL-AG-RKT 724
MPQ+++ R + L++GVS + G + AL+G +GSGK+ + +L AG R+T
Sbjct: 1 MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60
Query: 725 RGYITGNITISGYPKNQETFT-RISGYCEQ------NDIHSPYVTVYESLLYSAWLRLSS 777
G + + G P R Q N +H+ + E+ L +
Sbjct: 61 A----GRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDA 116
Query: 778 EVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 837
+ + + +E +++L P +S +R+ IA+ L+ I D
Sbjct: 117 TLTAALEAVGLENAARVLKLYPFE-----------MSGGMLQRMMIALALLCEAPFIIAD 165
Query: 838 EPTSGLDARAAAVVM 852
EPT+ LD A A ++
Sbjct: 166 EPTTDLDVVAQARIL 180
|
Length = 254 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.002
Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 33/193 (17%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI----TGNITISGYPKNQETF 744
L VS G L+G G+GK+TL+ +LAG I +G +T+ G
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG------IYPPDSGTVTVRG-------- 83
Query: 745 TRISGYCEQNDIHSPYVTVYESL-LYSAWLRLSSEVNSKTREM--FVEEVMELVELNPLR 801
R+S +P +T E++ L L LS +E+ ++E++E EL
Sbjct: 84 -RVSSLLGLGGGFNPELTGRENIYLNGRLLGLS------RKEIDEKIDEIIEFSELG--- 133
Query: 802 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT 861
+ LP V S+ + RL A+ P I+ +DE + DA R +R +
Sbjct: 134 -DFIDLP-VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ 191
Query: 862 GRTVVCTIHQPSI 874
G+TV+ H PS
Sbjct: 192 GKTVILVSHDPSS 204
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.003
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 122 VGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNG 181
V + + G+SGGQ++RV L L +DE ++ LD T + L L
Sbjct: 93 VLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGI 152
Query: 182 TALISLLQPAPEVYNLFDDIILVSDGQ 208
T ++ E L D ++++ DG+
Sbjct: 153 TVVLVTHDLD-EAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 131 SGGQRKRVTTGEMLV-GPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQ 189
SGGQ++RV +L GP L +DE + GLD ++ L + G +I +
Sbjct: 140 SGGQKQRVAIAGVLAMGPE-ILLLDEPTAGLDPKGRRELLELLKKLKE-EGGKTIIIVTH 197
Query: 190 PAPEVYNLFDDIILVSDGQIVYQGPLE 216
V D ++++ DG+I+ G
Sbjct: 198 DLELVLEYADRVVVLDDGKILADGDPA 224
|
Length = 235 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.003
Identities = 35/176 (19%), Positives = 62/176 (35%), Gaps = 41/176 (23%)
Query: 3 ALAGKLDSSLKASGKVTYNGHDMHEFVP---QRTAAYISQHDIHIGEMTVRETLAFSARC 59
L G +D G + NG + + + A++ QH + T+ E + +
Sbjct: 367 LLLGFVDP---TEGSIAVNGVPLADADADSWRDQIAWVPQHP-FLFAGTIAENIRLARP- 421
Query: 60 QGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCAD 119
+ + E R A +D F+ A L D
Sbjct: 422 ---DASDAEIREALER---------AGLDEFVAA--------------------LPQGLD 449
Query: 120 TVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQF 175
T +G+ G+SGGQ +R+ + A L +DE + LD+ T ++ +L
Sbjct: 450 TPIGEGG-AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRAL 504
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.003
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTG-RTVV 866
P LS Q++R+ IA L+ P I+ +DE TS LD+ + ++ +T+ + D +T++
Sbjct: 1354 PYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTII 1413
Query: 867 CTIHQ 871
H+
Sbjct: 1414 TIAHR 1418
|
Length = 1466 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 0.003
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 820 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVV 866
++ +A L +P ++ +DEPT G+D A A + R +R D G+ V+
Sbjct: 112 KVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.003
Identities = 51/190 (26%), Positives = 80/190 (42%), Gaps = 14/190 (7%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRK---TRGYITGNITISG---YPKNQE 742
L VS +TAL+G +G GK+T + L I G ++I G Y + +
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87
Query: 743 T--FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 800
+ G Q P +++Y+++ Y + N K + VE + L
Sbjct: 88 VVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDE 143
Query: 801 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD 860
+ P ++ LS Q++RL IA L P II DEPTS LD + A + + N +
Sbjct: 144 TSDRLKSPALS-LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMN-LK 201
Query: 861 TGRTVVCTIH 870
T+V H
Sbjct: 202 KDYTIVIVTH 211
|
Length = 258 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQ 871
LS Q++R+ IA L+ P ++ DEPT+ LD A ++ +R +TG T V H+
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 56/231 (24%), Positives = 87/231 (37%), Gaps = 51/231 (22%)
Query: 694 GAFRPGVLTALMGVTGSGKTTLMDVLAGR--KTRGYI-TGNITISGYPKNQETFTRISGY 750
G+ + ++G G GKTT + +LAG G I T+S P+
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQY---------- 69
Query: 751 CEQNDIHSPY-VTVYESLLYSAWLRLSSEVNSK-TREMFVEEVMELVELNPL--RQALVG 806
I + Y TV + LSS T F E+ + +++ + R+
Sbjct: 70 -----IKADYEGTVRD--------LLSSITKDFYTHPYFKTEIAKPLQIEQILDRE---- 112
Query: 807 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA----RAAAVVMRTVRNTVDTG 862
V LS + +R+ IA L + I +DEP++ LD A+ V+ R N T
Sbjct: 113 ---VPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTA 169
Query: 863 RTVVCTIHQPSI--DIFEAFDAGIPGVSKI-------RDGYNPATWMLEVT 904
V I D F+ G P V+ + R G N L++T
Sbjct: 170 FVVEHDIIMIDYLADRLIVFE-GEPSVNGVANPPQSLRSGMNRFLKNLDIT 219
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.004
Identities = 46/228 (20%), Positives = 83/228 (36%), Gaps = 64/228 (28%)
Query: 15 SGKVTYNGHDMHEFVPQRTAAYIS---QHDIHIGEMTVRETLAFSARCQGVGSRYDMLVE 71
G+++ GHD+ P+ A + Q +++VR+ L + A G
Sbjct: 55 EGQISVAGHDLRR-APRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHG---------- 103
Query: 72 LSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGIS 131
LSR E A+I +L L L AD V R ++
Sbjct: 104 LSRAEARARI------------------------AELLARLGLAERADDKV-----RELN 134
Query: 132 GGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNH-----ILNGTALIS 186
GG R+RV L+ L +DE + GLD ++ I + +L T L+
Sbjct: 135 GGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVD 194
Query: 187 LLQPAPEVYNLFDDIILVSDGQIVYQG---------PLEHVEQFFISM 225
++ D ++++ G+++ G +E F+++
Sbjct: 195 EIEAD-------DRLVVLHRGRVLADGAAAELRGATGGADLEAAFLAL 235
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 40.1 bits (93), Expect = 0.004
Identities = 11/54 (20%), Positives = 26/54 (48%)
Query: 821 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSI 874
L + + S++ +DEP +GL + ++ ++ + G ++ T H P +
Sbjct: 201 LLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHSPLL 254
|
Length = 256 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1230 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 99.98 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.98 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 99.98 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.98 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.98 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.98 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.98 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.98 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 99.98 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.98 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.98 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.98 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.98 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.98 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.98 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.98 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 99.97 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.97 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 99.97 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.97 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.97 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 99.97 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.97 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.97 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.97 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.97 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.97 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.97 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.97 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.97 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 99.97 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.97 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.97 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 99.97 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.97 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 99.97 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 99.97 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.97 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.97 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.97 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 99.97 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 99.97 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.97 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 99.97 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.97 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 99.97 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.97 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.97 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 99.97 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.97 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.97 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.97 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 99.97 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.97 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 99.97 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 99.97 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 99.97 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.97 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 99.97 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.97 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.97 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.97 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 99.97 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.97 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.97 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.97 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.97 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.97 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.96 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.96 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 99.96 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 99.96 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.96 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.96 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.96 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.96 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.96 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.96 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.96 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.96 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.96 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.96 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.96 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.96 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.96 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 99.96 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 99.96 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.95 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.95 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.95 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 99.95 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 99.95 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 99.95 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 99.95 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.95 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.95 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.95 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.95 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.95 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.94 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.94 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 99.94 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.94 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 99.94 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.94 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.94 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 99.94 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.94 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.94 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.94 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.94 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 99.94 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 99.94 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 99.94 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 99.94 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 99.94 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.94 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 99.94 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 99.94 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.94 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.94 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 99.93 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 99.93 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 99.93 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 99.93 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 99.93 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.93 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 99.93 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 99.93 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 99.93 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.93 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.93 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.92 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.92 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.92 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.92 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 99.92 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.92 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 99.92 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 99.92 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 99.92 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.92 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 99.92 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.92 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.92 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.92 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.92 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 99.92 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.92 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 99.92 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.92 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 99.92 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 99.92 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 99.91 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.91 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 99.91 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 99.91 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 99.91 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.91 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 99.91 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 99.91 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.91 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 99.91 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.91 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 99.91 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 99.91 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 99.91 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.91 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.91 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 99.91 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 99.91 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 99.91 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.91 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.91 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.91 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.91 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.91 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 99.91 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.91 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.91 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 99.91 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.91 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.91 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.91 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.9 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.9 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.9 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 99.9 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 99.9 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.9 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 99.9 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.9 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.9 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.9 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 99.9 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.9 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 99.9 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.9 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 99.9 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.9 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 99.9 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.9 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 99.9 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.9 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 99.9 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.9 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.9 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 99.9 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 99.9 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 99.9 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 99.9 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 99.9 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.9 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.9 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.9 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.9 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.9 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.9 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.9 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.9 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.9 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 99.9 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.9 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-196 Score=1775.19 Aligned_cols=1166 Identities=52% Similarity=0.903 Sum_probs=1066.0
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhc
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAK 80 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~ 80 (1230)
||+|+|.+++....+|+|++||++.++...++.++|++|+|+|+|.|||||||.|+++|++++.||+ +.+++|++.
T Consensus 158 lkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R~e~~~- 233 (1391)
T KOG0065|consen 158 LKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSRREKLA- 233 (1391)
T ss_pred HHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccHHHHHH-
Confidence 5899999998888899999999999998888999999999999999999999999999999999987 455555541
Q ss_pred cCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCccc
Q 000907 81 IIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGL 160 (1230)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGL 160 (1230)
+++|.+++++||.+|+||+||++++||+|||||||||+|++++++++++|+||+|+||
T Consensus 234 ----------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GL 291 (1391)
T KOG0065|consen 234 ----------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGL 291 (1391)
T ss_pred ----------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccc
Confidence 2589999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCCchhhhh
Q 000907 161 DSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQ 240 (1230)
Q Consensus 161 Ds~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~~f~~~G~~~p~~~n~ad~l~ 240 (1230)
||.|+.+++++||++++..+.|.+++|+||+++++++||+|++|++|+++|+||.+++++||+++||.||+++++|||++
T Consensus 292 DSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt 371 (1391)
T KOG0065|consen 292 DSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLT 371 (1391)
T ss_pred cHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCchhhhhhhhcCCCCCccCCHHHHHHHHHhchhhhhHhhhhCCCCCCCCCCCcccccCCcccCHHHHHHHHHHHHHH
Q 000907 241 EVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTTRKYGVGKKELLKACFSREHL 320 (1230)
Q Consensus 241 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R~~~ 320 (1230)
++++..++.+.+.....++...+.+|+.+.|.+++.+.++..+++.+.++.+.++.......+..+.|+|++.|+.|.+.
T Consensus 372 ~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~ 451 (1391)
T KOG0065|consen 372 EVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFL 451 (1391)
T ss_pred HhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHH
Confidence 99998777777777666777777899999999999999999999999998888888888899999999999999999999
Q ss_pred HhhcChHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHhhhCCC
Q 000907 321 LMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRF 400 (1230)
Q Consensus 321 ~~~r~~~~~~~~~~~~~~~~li~g~if~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~v~~rer~~~~ 400 (1230)
.++||...+...+.+.+++++++|++|++.+. .+..+...+.|++||.+.+.+++++++++.+++++||++|||+..+
T Consensus 452 l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~f 529 (1391)
T KOG0065|consen 452 LMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSF 529 (1391)
T ss_pred HHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccc
Confidence 99999999999999999999999999999873 4444566679999999999999999999999999999999999999
Q ss_pred CcchHHHHhHHHHhhhHHHHHHHHHHhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 000907 401 YPSWAYALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTFGSLV 480 (1230)
Q Consensus 401 y~~~~y~la~~i~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~l~~~i~~~~~~~~ia~~~~~~~ 480 (1230)
|++|++.++..++++|..++...+|.+|+||++|+.+++++||.++++.++++.+++++|++++++++++.+|+.++++.
T Consensus 530 Y~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~ 609 (1391)
T KOG0065|consen 530 YPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGIL 609 (1391)
T ss_pred cChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCcCCcccccchhhhhcHHHHHHHHHHHhhcCCCcccccCCC---------------CCCcchHHHHhh
Q 000907 481 LLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKILPN---------------KTKPLGIEVLDS 545 (1230)
Q Consensus 481 ~~~~~l~~Gf~i~~~~ip~~~~w~~yisp~~y~~~al~~nef~~~~~~~~~~~---------------~~~~~g~~~l~~ 545 (1230)
++++.+++||+||..+||+||+|++|++|+.|++++++.|||++..|.|.+.+ ...+.|.++++.
T Consensus 610 ~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g 689 (1391)
T KOG0065|consen 610 LLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSG 689 (1391)
T ss_pred HHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEec
Confidence 99999999999999999999999999999999999999999999999887322 124568888888
Q ss_pred cCcc-----cCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccccCCCccccccccCCCCccc
Q 000907 546 RGFF-----TDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTEHDSRTGGTVQLSTCANSSSHIT 620 (1230)
Q Consensus 546 ~~~~-----~~~~~~w~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1230)
+++. ....|+|+++++++++.++|.+...+++.|+++....+.....++............
T Consensus 690 ~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~~~~-------------- 755 (1391)
T KOG0065|consen 690 RDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKSAGS-------------- 755 (1391)
T ss_pred ccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchhccc--------------
Confidence 8777 667899999999999999999999999999998877766655544322211000000
Q ss_pred cccchhhhhhccCCCccccccccCCCCCCCCcccCCCCceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCe
Q 000907 621 RSESRDYVRRRNSSSQSRETTIETDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGV 700 (1230)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge 700 (1230)
.... +...+....+++++..|..+..++++||.+.++++-+++..+ +++++|+|||+.++||.
T Consensus 756 ------------~~~~--~~~~~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~ 818 (1391)
T KOG0065|consen 756 ------------SSEI--EKLDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGV 818 (1391)
T ss_pred ------------cccc--cccccccccccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCCc
Confidence 0000 000000000234556677788889999998888876665544 67889999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCC
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVN 780 (1230)
Q Consensus 701 ~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~ 780 (1230)
++||||+||||||||||+|+||.+.|.++|+|.+||.|.+++.++|.+|||.|+|.|.|.+||+|.|.|+|.||+|.+.+
T Consensus 819 LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~ 898 (1391)
T KOG0065|consen 819 LTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVS 898 (1391)
T ss_pred eeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCC
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCC-CEeEEeCCCCCCCHHHHHHHHHHHHHHH
Q 000907 781 SKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAVVMRTVRNTV 859 (1230)
Q Consensus 781 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p-~illlDEPtsgLD~~~~~~i~~~l~~~~ 859 (1230)
.+++.++||++++.++|++++|.+||.|+ +|||.+|||||+||.+|+.|| .||||||||||||+.++..|++.+|+++
T Consensus 899 ~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla 977 (1391)
T KOG0065|consen 899 DEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLA 977 (1391)
T ss_pred HHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 999999999999999999999 8999999999999999999999999999
Q ss_pred hCCCEEEEEecCCCHHHHHHHhc----------------------------CCCCCccCCCCCCCCccccccCCchhhhh
Q 000907 860 DTGRTVVCTIHQPSIDIFEAFDA----------------------------GIPGVSKIRDGYNPATWMLEVTAPSQEIA 911 (1230)
Q Consensus 860 ~~g~tvi~~~H~~~~~i~~~fd~----------------------------~~~~~~~~~~~~npad~~l~~~~~~~~~~ 911 (1230)
++|+||+||+||||.+||+.||+ ..+|. .|++..|||||++|+++...+.+
T Consensus 978 ~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~-~~~~~~NPA~~mLevi~~~~~~~ 1056 (1391)
T KOG0065|consen 978 DTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGV-KCISDENPAEWMLEVIGAGAEAS 1056 (1391)
T ss_pred hcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCc-cCCCCCChHHHHHhhcccccccc
Confidence 99999999999999999999998 11223 46666699999999999887777
Q ss_pred hhhcHHHHHHhhHHHHHHHHHHHHhcCCCCC-CccccccCCCCchhHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHH
Q 000907 912 LGVDFAAIYKSSELYRINKALIQELSKPAPG-SKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHYTAVRFLFTIFISL 990 (1230)
Q Consensus 912 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l 990 (1230)
...||++.|++|++++++++.++++++++++ ..+..+.++|+.|+|.|++.++||+++.+||+|.++++|++..++.|+
T Consensus 1057 ~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl 1136 (1391)
T KOG0065|consen 1057 LSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGL 1136 (1391)
T ss_pred cCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999988887 666677788999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCchhhhHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHH
Q 000907 991 IFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFV 1070 (1230)
Q Consensus 991 ~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~ 1070 (1230)
++|++||++|+ ++++++|.+|++|+++++.+..+.....+.+..||.+++||+++|+||+.+|++|++++|+|+.++
T Consensus 1137 ~iGf~F~~~g~---~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~ 1213 (1391)
T KOG0065|consen 1137 FIGFTFWKVGH---NVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLL 1213 (1391)
T ss_pred hheeeeeecCC---cHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHH
Confidence 99999999995 689999999999999999888877777787888999999999999999999999999999999999
Q ss_pred HHhhHhhhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhccccCCCCCchh
Q 000907 1071 QAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVW 1150 (1230)
Q Consensus 1071 ~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~ 1150 (1230)
++++|.+++|+|+||.+++.+|++|++.+++..++.+.+|+++.+++||.++|+.+.+++++++.+|||+++|++.||.|
T Consensus 1214 ~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~f 1293 (1391)
T KOG0065|consen 1214 QSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKF 1293 (1391)
T ss_pred HHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcHHHHHHHHHHHHhhCCCccccC----------CCCcHHHHHHhhhC----CCccchhHHHHHHHHHHHHHHH
Q 000907 1151 WRWSYWANPIAWTLYGFFASQFGDVQDRLE----------SGETVKQFLRSYYG----FKHDFLGAVAAVVFVLPSLFAF 1216 (1230)
Q Consensus 1151 ~~w~~~~sp~~y~~~~l~~nef~~~~~~~~----------~~~~~~~~~~~~~~----~~~~~~~~~~~il~~~~~~~~~ 1216 (1230)
|+|+||+||+.|.+++++..+++|.+..|. +|.++|+|+..++| +.++.......+.++|.+++.+
T Consensus 1294 W~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~ 1373 (1391)
T KOG0065|consen 1294 WIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAF 1373 (1391)
T ss_pred eeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHH
Confidence 999999999999999999999999988874 24589999999999 7777766777788899999999
Q ss_pred HHHHHHHhhccccC
Q 000907 1217 VFALGIRVLNFQKR 1230 (1230)
Q Consensus 1217 ~~~~~l~~~~~~~r 1230 (1230)
++.+..++.+++||
T Consensus 1374 l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1374 LAAFNIKYLNFWRN 1387 (1391)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999886
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-187 Score=1831.71 Aligned_cols=1227 Identities=60% Similarity=1.064 Sum_probs=1052.9
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhc
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAK 80 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~ 80 (1230)
||+|+|++.+..+++|+|++||++.++...++.++||+|+|.|++++||+|||.|++++++.+.+++.+.+.+++++..+
T Consensus 208 Lk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~ 287 (1470)
T PLN03140 208 LLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAG 287 (1470)
T ss_pred HHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhcc
Confidence 68999998776678999999999987655578899999999999999999999999999876666665556666666655
Q ss_pred cCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCccc
Q 000907 81 IIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGL 160 (1230)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGL 160 (1230)
..|..+++..+++...++.+.+..+|.+|+.+||++|+||.||++..|||||||||||+||++|+++|+++|||||||||
T Consensus 288 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGL 367 (1470)
T PLN03140 288 IFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGL 367 (1470)
T ss_pred CCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCc
Confidence 55666666666665555555667789999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCCchhhhh
Q 000907 161 DSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQ 240 (1230)
Q Consensus 161 Ds~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~~f~~~G~~~p~~~n~ad~l~ 240 (1230)
|+.++.++++.|+++++..|+|+++++|||+++++++||+|++|++|+++|+||.+++.+||+++||+||++.|||||++
T Consensus 368 Ds~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~ 447 (1470)
T PLN03140 368 DSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQ 447 (1470)
T ss_pred cHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHH
Confidence 99999999999999987678899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCchhhhhhhhcCCCCCccCCHHHHHHHHHhchhhhhHhhhhCCCCCCCCCCCcccccCCcccCHHHHHHHHHHHHHH
Q 000907 241 EVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTTRKYGVGKKELLKACFSREHL 320 (1230)
Q Consensus 241 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R~~~ 320 (1230)
+++++.++++.+.....|++..+.+++.++|++++.++.+.++++.+.++...++......++..++++|++.|++|+++
T Consensus 448 ~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~ 527 (1470)
T PLN03140 448 EVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWL 527 (1470)
T ss_pred HhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHH
Confidence 99998666555443344445567899999999998887777666554443333333333456888899999999999999
Q ss_pred HhhcChHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHhhhCCC
Q 000907 321 LMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRF 400 (1230)
Q Consensus 321 ~~~r~~~~~~~~~~~~~~~~li~g~if~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~~~v~~rer~~~~ 400 (1230)
.++||+..+..++++.+++|+++|++|++++.+..+..+...+.|++||.+.+.++.++.+++.++.+||+|+|||+.++
T Consensus 528 ~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~ 607 (1470)
T PLN03140 528 LMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLF 607 (1470)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhccC
Confidence 99999999999999999999999999999976554444556678999999999999999999999999999999999999
Q ss_pred CcchHHHHhHHHHhhhHHHHHHHHHHhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 000907 401 YPSWAYALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTFGSLV 480 (1230)
Q Consensus 401 y~~~~y~la~~i~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~l~~~i~~~~~~~~ia~~~~~~~ 480 (1230)
|++++|+++++++++|+.++++++|++|+|||+|+++++++||.++++.+++++++++++++++++++++.+|+.+++++
T Consensus 608 Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~ 687 (1470)
T PLN03140 608 HPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALV 687 (1470)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCcCCcccccchhhhhcHHHHHHHHHHHhhcCCCccccc-CCCCCCcchHHHHhhcCcccCCcchhHHH
Q 000907 481 LLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKI-LPNKTKPLGIEVLDSRGFFTDAYWYWLGV 559 (1230)
Q Consensus 481 ~~~~~l~~Gf~i~~~~ip~~~~w~~yisp~~y~~~al~~nef~~~~~~~~-~~~~~~~~g~~~l~~~~~~~~~~~~w~~~ 559 (1230)
++++++|+||+++.++||+||+|++|+||+.|++++++.|||.+..|.+. +.+...+.|.++|+.+++..++.|+|+++
T Consensus 688 ~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~ 767 (1470)
T PLN03140 688 LLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGV 767 (1470)
T ss_pred HHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHhcCcCccccchhhhH
Confidence 99999999999999999999999999999999999999999988776532 22334678999999999998888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccccCCCccccccccCCCC--ccccccchhhhhhccCCCcc
Q 000907 560 GALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQSTEHDSRTGGTVQLSTCANSSS--HITRSESRDYVRRRNSSSQS 637 (1230)
Q Consensus 560 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 637 (1230)
+++++++++|.+++++++.+.++....+.....+................. ...... ......... .........
T Consensus 768 ~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~ 844 (1470)
T PLN03140 768 GALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLS-SADGNNTREVAIQRMSN--PEGLSKNRD 844 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhccccccccccc-ccccccccccccccccc--ccccccccc
Confidence 999999999999999999998865544333221110000000000000000 000000 000000000 000000000
Q ss_pred ccccccCCCCCCCCcccCCCCceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHH
Q 000907 638 RETTIETDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMD 717 (1230)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~ 717 (1230)
............+++.+|..|..++|+|++|.++.+.+.++.+...+++.+|+|||++++|||++||+||||||||||||
T Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~ 924 (1470)
T PLN03140 845 SSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMD 924 (1470)
T ss_pred cccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHH
Confidence 00000001122345566788899999999999987765555555556678999999999999999999999999999999
Q ss_pred HHhCCCCCCeEEEEEEECCeecChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC
Q 000907 718 VLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL 797 (1230)
Q Consensus 718 ~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l 797 (1230)
+|+|+.++|..+|+|.+||.+.+...+++.+|||+|+|.+++.+||+|+|.|++.++.+...+.+++.++++++++.++|
T Consensus 925 ~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL 1004 (1470)
T PLN03140 925 VLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVEL 1004 (1470)
T ss_pred HHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCC
Confidence 99999876667899999998876555677899999999999999999999999888876555666667789999999999
Q ss_pred CccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHH
Q 000907 798 NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIF 877 (1230)
Q Consensus 798 ~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~ 877 (1230)
.+++|+.+|.+++++|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.+++
T Consensus 1005 ~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~ 1084 (1470)
T PLN03140 1005 DNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1084 (1470)
T ss_pred hhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHH
Confidence 99999999988888999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HHHhcC----------------------------CCCCccCCCCCCCCccccccCCchhhhhhhhcHHHHHHhhHHHHHH
Q 000907 878 EAFDAG----------------------------IPGVSKIRDGYNPATWMLEVTAPSQEIALGVDFAAIYKSSELYRIN 929 (1230)
Q Consensus 878 ~~fd~~----------------------------~~~~~~~~~~~npad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 929 (1230)
+.||+. .+|.+.||+++|||||++|+++.+.+.....||++.|++|+.+++.
T Consensus 1085 ~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~ 1164 (1470)
T PLN03140 1085 EAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRN 1164 (1470)
T ss_pred HhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccccchHHHHHhccHHHHHH
Confidence 999981 1233458999999999999988665544456899999999999888
Q ss_pred HHHHHHhcCCCCCCccccccCCCCchhHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhh
Q 000907 930 KALIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDL 1009 (1230)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~G~~f~~~~~~~~~~~~~ 1009 (1230)
.+.+++...+++..++..+.++++.++|+|+.+|++|+++++||||.++.+|+++++++|+++|++||+++++..+++++
T Consensus 1165 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~ 1244 (1470)
T PLN03140 1165 KALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDL 1244 (1470)
T ss_pred HHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhH
Confidence 77777666554444444445678999999999999999999999999999999999999999999999999877778899
Q ss_pred HhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhHhhhhhcccccccCH
Q 000907 1010 FNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTA 1089 (1230)
Q Consensus 1010 ~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~ 1089 (1230)
++++|++|+++++.++.++.+++|.+..||++|+||+++|+|++++|++|++++|+|+.++.+++|++|+|||+||++++
T Consensus 1245 ~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~ 1324 (1470)
T PLN03140 1245 TMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTA 1324 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccH
Confidence 99999999999999998888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhccccCCCCCchhhHHHHhhcHHHHHHHHHHH
Q 000907 1090 AKFFWFLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFA 1169 (1230)
Q Consensus 1090 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~ 1169 (1230)
++||+|+++++++.++++++|+++++++|+.++|..+++++++++++|+||++|+++||+||+|++|+||++|+++|++.
T Consensus 1325 ~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~ 1404 (1470)
T PLN03140 1325 AKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIV 1404 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCccccCC-----CCcHHHHHHhhhCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 000907 1170 SQFGDVQDRLES-----GETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNFQKR 1230 (1230)
Q Consensus 1170 nef~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~r 1230 (1230)
|||+|.+..|.+ ++++.+|++++|||+++++|++++++++|+++|+++++++++++|||||
T Consensus 1405 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1405 SQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred HHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 999998776532 2467899999999999999999999999999999999999999999998
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-165 Score=1632.64 Aligned_cols=1164 Identities=31% Similarity=0.514 Sum_probs=949.8
Q ss_pred CccccCCcCCCC-ceeEEEEECCccCCCC--cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHH
Q 000907 1 MLALAGKLDSSL-KASGKVTYNGHDMHEF--VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 77 (1230)
Q Consensus 1 l~~Lag~~~~~~-~~~G~V~vnG~~~~~~--~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~ 77 (1230)
||+|+|++.+.. ..+|+|++||++.++. ..++.++||+|+|.|++++||+|||.|+++++.+..+.+ +..+.++
T Consensus 104 Lk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~---~~~~~~~ 180 (1394)
T TIGR00956 104 LKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPD---GVSREEY 180 (1394)
T ss_pred HHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCC---CCCHHHH
Confidence 588999875432 4799999999987542 235679999999999999999999999998765322110 0111111
Q ss_pred hhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCC
Q 000907 78 AAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 157 (1230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPT 157 (1230)
.++.++.+++.+||++++||.||++.++||||||||||+||++|+++|+|+||||||
T Consensus 181 -----------------------~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPT 237 (1394)
T TIGR00956 181 -----------------------AKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNAT 237 (1394)
T ss_pred -----------------------HHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCC
Confidence 112357799999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCCchh
Q 000907 158 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIAD 237 (1230)
Q Consensus 158 SGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~~f~~~G~~~p~~~n~ad 237 (1230)
||||+.++.++++.|+++++..|+|+|+++|||+++++++||+|++|++|+++|+|+.+++.+||+++||+||++.||||
T Consensus 238 sgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aD 317 (1394)
T TIGR00956 238 RGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTAD 317 (1394)
T ss_pred CCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHH
Confidence 99999999999999999997668899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCchhhhhhhhcCCCCCccCCHHHHHHHHHhchhhhhHhhhhCCCCCCC---------------CCCCcccccCC
Q 000907 238 FLQEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKK---------------NSHPAALTTRK 302 (1230)
Q Consensus 238 ~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~ 302 (1230)
|+++++++.+.. ..... +...+.+.+++.+.|++++.++++.++++...++. ...+.......
T Consensus 318 fl~~~~~~~~~~-~~~~~-e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (1394)
T TIGR00956 318 FLTSLTSPAERQ-IKPGY-EKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSP 395 (1394)
T ss_pred HHHhccChhhhh-ccccc-cccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCC
Confidence 999998765421 11111 11223567899999999887766655443211110 00001112235
Q ss_pred cccCHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccchhhHHHHHHHHHHHHHHHHH
Q 000907 303 YGVGKKELLKACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMAEI 382 (1230)
Q Consensus 303 ~~~~~~~~~~~l~~R~~~~~~r~~~~~~~~~~~~~~~~li~g~if~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~ 382 (1230)
+..+++.|++.|++|+++..+||+..+..++++.+++|+++|++|++++.+..+ ...+.|++||++.+.++.++.++
T Consensus 396 ~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~---~~~r~g~lf~~~~~~~~~~~~~i 472 (1394)
T TIGR00956 396 YTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSD---FYSRGGALFFAILFNAFSSLLEI 472 (1394)
T ss_pred CcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchh---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999999999999999999999999999998865433 34568999999999999999898
Q ss_pred HHHhccchhHHHhhhCCCCcchHHHHhHHHHhhhHHHHHHHHHHhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 000907 383 SMTIAKLPVFYKQRDLRFYPSWAYALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRL 462 (1230)
Q Consensus 383 ~~~~~~~~v~~rer~~~~y~~~~y~la~~i~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~l~~~ 462 (1230)
..++.+|++++|||..++|++++|++|+.++++|+.++.+++|++|+|||+|++.++++||.++++.+++..++++++++
T Consensus 473 ~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~ 552 (1394)
T TIGR00956 473 ASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRS 552 (1394)
T ss_pred HHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHhccccCcCCcccccchhhhhcHHHHHHHHHHHhhcCCCcccccC---C-------
Q 000907 463 IAAVGRSMVVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKIL---P------- 532 (1230)
Q Consensus 463 i~~~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~w~~yisp~~y~~~al~~nef~~~~~~~~~---~------- 532 (1230)
++++++++..|+.+++++++++++++||+++.++||+||+|++|+||+.|++++++.|||.+..+.|.. .
T Consensus 553 i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~ 632 (1394)
T TIGR00956 553 IGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNL 632 (1394)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999998887731 1
Q ss_pred --------------CCCCcchHHHHhh-cCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccc
Q 000907 533 --------------NKTKPLGIEVLDS-RGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGTSKAFISEESQST 597 (1230)
Q Consensus 533 --------------~~~~~~g~~~l~~-~~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 597 (1230)
+.+.+.|+++|+. +++. ..|.|.+++++++++++|.++.++++.+.++.........+.....
T Consensus 633 ~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~--~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 710 (1394)
T TIGR00956 633 GVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYY--NSHKWRNFGIIIGFTVFFFFVYILLTEFNKGAKQKGEILVFRRGSL 710 (1394)
T ss_pred CccCccccCCCCcCCcccccHHHHHHhcCCcc--cchhhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCceEeeccccc
Confidence 1124578899984 5554 5578999999999999999999999999885544332222221100
Q ss_pred cccccCCCccccccccCCCCccccccchhhhhhccCCCccccccccCCC-CCCCCcccCCCCceeEEeeeEEEEecCccc
Q 000907 598 EHDSRTGGTVQLSTCANSSSHITRSESRDYVRRRNSSSQSRETTIETDQ-PKNRGMVLPFEPFSLTFDEITYSVDMPQEM 676 (1230)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1230)
......... .... ........++. ... ...+... ........+.....++|+|+++.++.+
T Consensus 711 ~~~~~~~~~-~~~~------~~~~e~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~~~~~--- 772 (1394)
T TIGR00956 711 KRAKKAGET-SASN------KNDIEAGEVLG-----STD---LTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIK--- 772 (1394)
T ss_pred cchhhcccc-cccc------cccccccccCC-----CCc---cccccccccccccccccCCCceEEEEeeEEEecCC---
Confidence 000000000 0000 00000000000 000 0000000 000000000112358999999987421
Q ss_pred ccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-eEEEEEEECCeecChhcccceEEEEccCC
Q 000907 677 KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG-YITGNITISGYPKNQETFTRISGYCEQND 755 (1230)
Q Consensus 677 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~ 755 (1230)
.+++.+|+|||++++|||++||+||||||||||||+|+|+.+++ ..+|+|.+||++... .+++.+|||+|+|
T Consensus 773 ------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~ 845 (1394)
T TIGR00956 773 ------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQD 845 (1394)
T ss_pred ------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccc
Confidence 23467999999999999999999999999999999999997644 346999999998753 4678899999999
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC-Ee
Q 000907 756 IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPS-II 834 (1230)
Q Consensus 756 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~-il 834 (1230)
.+++.+||+||+.|++.++.+...+++++.++++++++.++|.+++|+.+|.++. +||||||||++||+||+.+|+ ||
T Consensus 846 ~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~-~LSgGqrqRl~Ia~aL~~~P~~iL 924 (1394)
T TIGR00956 846 LHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVELVAKPKLLL 924 (1394)
T ss_pred cCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCC-CCCHHHhhHHHHHHHHHcCCCeEE
Confidence 9999999999999999888765556666778899999999999999999987643 899999999999999999997 99
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhcC---------------------------CCCC
Q 000907 835 FMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDAG---------------------------IPGV 887 (1230)
Q Consensus 835 llDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~~---------------------------~~~~ 887 (1230)
||||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||+. ..|.
T Consensus 925 lLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~ 1004 (1394)
T TIGR00956 925 FLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGA 1004 (1394)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCC
Confidence 9999999999999999999999998889999999999998899999981 0122
Q ss_pred ccCCCCCCCCccccccCCchhhhhhhhcHHHHHHhhHHHHHHHHHHHHhcCCCCCC---ccccccCCCCchhHHHHHHHH
Q 000907 888 SKIRDGYNPATWMLEVTAPSQEIALGVDFAAIYKSSELYRINKALIQELSKPAPGS---KELYFANQYPLSFFTQCMACL 964 (1230)
Q Consensus 888 ~~~~~~~npad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~q~~~l~ 964 (1230)
.+||+++|||||++|+++...+.....++.+.|+.|+.++...+.++....+.... .......+++.++|+|+++|+
T Consensus 1005 ~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~ 1084 (1394)
T TIGR00956 1005 PKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVL 1084 (1394)
T ss_pred CCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCHHHHHHHHH
Confidence 46899999999999998764433334589999999988776655544433221111 111122468899999999999
Q ss_pred HHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHH-H
Q 000907 965 WKQHWSYSRNPHYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVF-Y 1043 (1230)
Q Consensus 965 ~R~~~~~~R~~~~~~~~~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~-~ 1043 (1230)
+|+++++||||.++++|+++++++|+++|++||++++ +++++++|+|++|+++++.++. +...+|.|+.||.+| +
T Consensus 1085 ~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~---~~~~i~~~~g~~f~~~~~~~~~-~~~~~~~f~~~r~~~~~ 1160 (1394)
T TIGR00956 1085 WRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQGLQNQMFAVFMATVLFNPL-IQQYLPPFVAQRDLYEV 1160 (1394)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999986 4678999999999988777665 344557788888886 8
Q ss_pred hhhcCCCCChHHHHHHHHHHHHHHHHHHHhhHhhhhhcccccccCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 000907 1044 REKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAK-------FFWFLFFMFFSLLYFTFFGMMLVAW 1116 (1230)
Q Consensus 1044 rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~-------f~~~~~~~~~~~~~~~~~~~~~~~~ 1116 (1230)
||+.+|+|++.+|++|++++|+|+.++.+++|++|+|||+||++++.. |++|++++++..++++++|++++++
T Consensus 1161 RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~ 1240 (1394)
T TIGR00956 1161 RERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISF 1240 (1394)
T ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988766 9999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHhhccccCCCCCchhhHHHHhhcHHHHHHHHHHHHhhCCCccccCC----------CCcH-
Q 000907 1117 TPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQDRLES----------GETV- 1185 (1230)
Q Consensus 1117 ~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~nef~~~~~~~~~----------~~~~- 1185 (1230)
+|+..+|+.+++++++++++|+||++++++||.||+|++|+||++|+++|++.|||++.+..|.+ |.+|
T Consensus 1241 ~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~ 1320 (1394)
T TIGR00956 1241 NPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCG 1320 (1394)
T ss_pred CCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999998876632 1122
Q ss_pred -------------------------------HHHHHhhhCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 000907 1186 -------------------------------KQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNFQK 1229 (1230)
Q Consensus 1186 -------------------------------~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~ 1229 (1230)
.+++ ..+|++.++.|+|++++++|++++ +++++++++....+
T Consensus 1321 ~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l-~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~~r~~ 1393 (1394)
T TIGR00956 1321 EYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFL-EPISSKYSGRWRNFGIFIAFIFFN-IIATVFFYWLARVP 1393 (1394)
T ss_pred HHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHH-HHcCCcccccccchhhhhHHHHHH-HHHHHhhheEEEcC
Confidence 3343 467999999999999999999988 77778887764433
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-92 Score=864.90 Aligned_cols=559 Identities=31% Similarity=0.540 Sum_probs=480.8
Q ss_pred CCceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-eEEEEEEEC
Q 000907 657 EPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG-YITGNITIS 735 (1230)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~ 735 (1230)
.++.+.|+|+++..+.+.. ..+++|+|||++++|||++|||||||||||||||+|+|+...+ ..+|+|.+|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 4567999999998753211 3578999999999999999999999999999999999998764 689999999
Q ss_pred CeecChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 736 GYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 736 g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
|++.+.+.+++.+|||+|||.++|++||+|+|.|++.+|+|...++++++++|+++++.+||.+++|+++|++..||+||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98888888999999999999999999999999999999999888899999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhcC---------CC-
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDAG---------IP- 885 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~~---------~~- 885 (1230)
||||||+||.+|++||+||+|||||||||+.++.++++.|+++|++|+|||+++|||++++|++||+. +.
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999991 12
Q ss_pred ------------CCccCCCCCCCCccccccCCch-hhhhhhhcHHHHHHhhHHHH--H-HHHHHHHhcCCCCCCcccccc
Q 000907 886 ------------GVSKIRDGYNPATWMLEVTAPS-QEIALGVDFAAIYKSSELYR--I-NKALIQELSKPAPGSKELYFA 949 (1230)
Q Consensus 886 ------------~~~~~~~~~npad~~l~~~~~~-~~~~~~~~~~~~~~~s~~~~--~-~~~~~~~~~~~~~~~~~~~~~ 949 (1230)
|. +||++.|||||++|+++.+ .... ..+..+.++....++ . ..+......+....... .+
T Consensus 254 ~~~~~~~ff~~~G~-~~P~~~Npadf~l~l~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 329 (613)
T KOG0061|consen 254 SPRELLEFFSSLGF-PCPELENPADFLLDLLSVDSGTRE-LEEAVRIAKLINKFSQTDNLKKTLEALEKSLSTSKK--VE 329 (613)
T ss_pred CHHHHHHHHHhCCC-CCCCcCChHHHHHHHHccCCCchh-HHhHHHHHHHhhhccccchhhhhHHHHhhhcccccc--cc
Confidence 22 4899999999999998842 1100 001111111110000 0 00000000000000000 11
Q ss_pred CCCCchhHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhHhHHHHHHHHHHHHHHHhhh
Q 000907 950 NQYPLSFFTQCMACLWKQHWSYSRNPHYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVS 1029 (1230)
Q Consensus 950 ~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~ 1029 (1230)
.....+||.|+..+++|.+++.+|||.+...|+++.+++|+++|++||+++++ ..++++|.|++|+.+.++.+.++.
T Consensus 330 ~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~---~~~~~~~~g~~~~~~~~~~f~~~~ 406 (613)
T KOG0061|consen 330 IGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGND---AKGIQNRLGLFFFILSFMTFLSMF 406 (613)
T ss_pred cccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCc---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11278999999999999999999999999999999999999999999999764 456779999999999998888888
Q ss_pred hhhhhhhhhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhHhhhhhcccccccCHHHHHHHHHHHHHHHHHHHHH
Q 000907 1030 SVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFF 1109 (1230)
Q Consensus 1030 ~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~ 1109 (1230)
+.++.|+.||++|.||+.+|+|+.++|++|++++++|+.++.+++|++|+|||+|++++..+|++|++++++..++++++
T Consensus 407 ~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~ 486 (613)
T KOG0061|consen 407 GAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESL 486 (613)
T ss_pred hHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHhhccccCCCCCchhhHHHHhhcHHHHHHHHHHHHhhCCCccccC-----CCCc
Q 000907 1110 GMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQDRLE-----SGET 1184 (1230)
Q Consensus 1110 ~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~nef~~~~~~~~-----~~~~ 1184 (1230)
|+++++..||...|..+++++++++++|+||+++.++||.||+|++|+|+++|++||++.|||.+....|. +...
T Consensus 487 ~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~ 566 (613)
T KOG0061|consen 487 GLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCES 566 (613)
T ss_pred HHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999986333332 1122
Q ss_pred HHHHHHhhhCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 000907 1185 VKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNFQKR 1230 (1230)
Q Consensus 1185 ~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~r 1230 (1230)
.++.+..+.+++..+.|.++.+++++.++|+++++++|++..+.+|
T Consensus 567 ~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 567 TGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred cHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 3344446789999999999999999999999999999998776654
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-91 Score=863.71 Aligned_cols=559 Identities=24% Similarity=0.402 Sum_probs=462.6
Q ss_pred CCceeEEeeeEEEEecCc----------------ccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 000907 657 EPFSLTFDEITYSVDMPQ----------------EMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLA 720 (1230)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~ 720 (1230)
.+++++|.+++|+++... ..++..+.++++.+|+|+|+++++||++||+||||||||||||+|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 467899999999986432 1122333455678999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEEEECCeecChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 000907 721 GRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 800 (1230)
Q Consensus 721 g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 800 (1230)
|+.+++..+|+|.+||++... ..++.+|||+|++.+++.+||+||+.|++.++.+.....+++.++++++++.+||.++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECch-hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 987654468999999998653 3346689999999999999999999998877765445556666789999999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHH
Q 000907 801 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 880 (1230)
Q Consensus 801 ~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~f 880 (1230)
+|+.+|+...++||||||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++|+|||+++|||+.++++.+
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999988788999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred hcCC----------------------CCCccCCCCCCCCccccccCCchhhh------h---hhhcHHHHHHhhHHHHHH
Q 000907 881 DAGI----------------------PGVSKIRDGYNPATWMLEVTAPSQEI------A---LGVDFAAIYKSSELYRIN 929 (1230)
Q Consensus 881 d~~~----------------------~~~~~~~~~~npad~~l~~~~~~~~~------~---~~~~~~~~~~~s~~~~~~ 929 (1230)
|+.. .|. .||+++|||||++|+++.+.+. . ......+.|++.. .+..
T Consensus 275 D~iilL~~G~iv~~G~~~~~~~~f~~~G~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 352 (659)
T PLN03211 275 DSVLVLSEGRCLFFGKGSDAMAYFESVGF-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLL-APKV 352 (659)
T ss_pred ceEEEecCCcEEEECCHHHHHHHHHHCCC-CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhc-cHHH
Confidence 9821 122 5899999999999998753210 0 0012233443211 1111
Q ss_pred HHHHHH--hcC-CCC-----CCccc-cccCCCCchhHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCC
Q 000907 930 KALIQE--LSK-PAP-----GSKEL-YFANQYPLSFFTQCMACLWKQHWSYSRNPHYTAVRFLFTIFISLIFGTMFWDMG 1000 (1230)
Q Consensus 930 ~~~~~~--~~~-~~~-----~~~~~-~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~G~~f~~~~ 1000 (1230)
.+..+. ... ... ..+.. .....+..+||+|+.+|++|++++ |||+.+..+|+++++++|+++|++||+++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~ 431 (659)
T PLN03211 353 KAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD 431 (659)
T ss_pred HHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 111110 000 000 00000 011234578999999999999988 89999999999999999999999999984
Q ss_pred CCCCchhhhHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhHhhhhh
Q 000907 1001 TKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVY 1080 (1230)
Q Consensus 1001 ~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y 1080 (1230)
..++++|.|++||++++.++.++++.++.|+.||++|+||+.+|+|++++|++|++++|+|+.++.+++|++|+|
T Consensus 432 -----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y 506 (659)
T PLN03211 432 -----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTY 506 (659)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhee
Confidence 457899999999999998888887888999999999999999999999999999999999999999999999999
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhccccCCCCCchhhHHHHhhcHH
Q 000907 1081 AMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPI 1160 (1230)
Q Consensus 1081 ~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~~sp~ 1160 (1230)
||+||++++++||+|++++++..++++++|+++++++|+..+|+.+++++++++++|+||+++ +||+||+|++|+||+
T Consensus 507 ~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~ 584 (659)
T PLN03211 507 WMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTT 584 (659)
T ss_pred EcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHH
Confidence 999999999999999999999999999999999999999999999999999999999999997 799999999999999
Q ss_pred HHHHHHHHHHhhCCCc-----cccCCC----CcHHHHHHhhhCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000907 1161 AWTLYGFFASQFGDVQ-----DRLESG----ETVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNF 1227 (1230)
Q Consensus 1161 ~y~~~~l~~nef~~~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~ 1227 (1230)
+|+++|++.|||++.+ .+|+.. .....++ ...+++....|.++++|++++++|+++++++|++++|
T Consensus 585 ~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~~ 659 (659)
T PLN03211 585 FYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFV-EEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRIKH 659 (659)
T ss_pred HHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccc-hhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999998653 246321 0111122 2234445568999999999999999999999998876
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-90 Score=860.60 Aligned_cols=544 Identities=30% Similarity=0.475 Sum_probs=475.4
Q ss_pred CceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-eEEEEEEECCeecChhcccceEEEEccCCccCCCCC
Q 000907 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG-YITGNITISGYPKNQETFTRISGYCEQNDIHSPYVT 762 (1230)
Q Consensus 684 ~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lt 762 (1230)
+++.+|+|+|++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.+...+++.+|||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 4567999999999999999999999999999999999987653 357999999998776667888999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC-CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCC
Q 000907 763 VYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPG-VNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 841 (1230)
Q Consensus 763 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-~~~lSgGqrqrl~ia~al~~~p~illlDEPts 841 (1230)
|+||+.|++.++.+.....++++++++++++.+||.+++|+.+|+++ .++||||||||++||+||+++|++++|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999988887666777778889999999999999999999764 67899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhcCC---------CCC------------ccCCCCCCCCccc
Q 000907 842 GLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDAGI---------PGV------------SKIRDGYNPATWM 900 (1230)
Q Consensus 842 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~~~---------~~~------------~~~~~~~npad~~ 900 (1230)
|||+.++..+++.|++++++|+|||+++|||+.+++++||+.. .|. ..||++.|||||+
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~ 275 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFY 275 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHH
Confidence 9999999999999999988899999999999999999999921 110 2589999999999
Q ss_pred cccCCchhhhh-----hhhcHHHHHHhhHHHHHHHHHHHHhcCCCC---CCccccccCCCCchhHHHHHHHHHHHHHHhh
Q 000907 901 LEVTAPSQEIA-----LGVDFAAIYKSSELYRINKALIQELSKPAP---GSKELYFANQYPLSFFTQCMACLWKQHWSYS 972 (1230)
Q Consensus 901 l~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~ 972 (1230)
+|+++.+.+.. ...++.+.|+.++.+++..+.......... .........++..+|+.|+.+|++|+++..|
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~ 355 (617)
T TIGR00955 276 VQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVL 355 (617)
T ss_pred HHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHh
Confidence 99987543211 123456667776655544333221111100 0111112245678999999999999999999
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHhhhcCCCCC
Q 000907 973 RNPHYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYS 1052 (1230)
Q Consensus 973 R~~~~~~~~~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~ 1052 (1230)
|||.++..|+++++++|+++|++||++++ +++++++|.|++|+++.++++.++....+.++.||++|+||+.+|+|+
T Consensus 356 R~~~~~~~~~~~~i~~~li~G~~f~~~~~---~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~ 432 (617)
T TIGR00955 356 RDPLLLKVRLIQTMMTAILIGLIYLGQGL---TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYR 432 (617)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccC
Confidence 99999999999999999999999999986 457789999999999998888887787888999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHhhhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 000907 1053 PMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYG 1132 (1230)
Q Consensus 1053 ~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 1132 (1230)
+++|++|++++|+|+.++.+++|++|+|||+|+++++.+||+|++++++..++++++|+++++++|+..+|+.+++++++
T Consensus 433 ~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~ 512 (617)
T TIGR00955 433 VSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVI 512 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccCCCCCchhhHHHHhhcHHHHHHHHHHHHhhCCCcc-ccCCC------CcHHHHHHhhhCCCccchhHHHH
Q 000907 1133 LWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQD-RLESG------ETVKQFLRSYYGFKHDFLGAVAA 1205 (1230)
Q Consensus 1133 ~~~l~~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~nef~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 1205 (1230)
++++|+||++++++||+||+|++|+||++|++++++.|||.+.+. +|.++ +..|+++++.||++.++.|.+++
T Consensus 513 ~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~~~~~~~~ 592 (617)
T TIGR00955 513 PFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNADLYLDLI 592 (617)
T ss_pred HHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcccHHHHHH
Confidence 999999999999999999999999999999999999999998765 56421 11257777899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccC
Q 000907 1206 VVFVLPSLFAFVFALGIRVLNFQKR 1230 (1230)
Q Consensus 1206 il~~~~~~~~~~~~~~l~~~~~~~r 1230 (1230)
+|+++.++|+++++++|++...++|
T Consensus 593 il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 593 GLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999777776
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-88 Score=894.30 Aligned_cols=566 Identities=23% Similarity=0.378 Sum_probs=483.2
Q ss_pred CCceeEEeeeEEEEecCcc--ccc---------------c--cccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHH
Q 000907 657 EPFSLTFDEITYSVDMPQE--MKR---------------R--GVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMD 717 (1230)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~--~~~---------------~--~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~ 717 (1230)
..+.+.|+|++........ .+. . +.+..++++|+|||+.+++||+++|+||||||||||||
T Consensus 26 ~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk 105 (1394)
T TIGR00956 26 YKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLK 105 (1394)
T ss_pred CeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 4568999999887632110 000 0 12234578999999999999999999999999999999
Q ss_pred HHhCCCCC--CeEEEEEEECCeecCh--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCC----CCCHHHHHH-HH
Q 000907 718 VLAGRKTR--GYITGNITISGYPKNQ--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSS----EVNSKTREM-FV 788 (1230)
Q Consensus 718 ~l~g~~~~--~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~----~~~~~~~~~-~~ 788 (1230)
+|+|+.+. .+.+|+|.+||.+... ..+++.++|++|+|.+++.+||+|++.|++.++.+. ...+++..+ .+
T Consensus 106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1394)
T TIGR00956 106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIA 185 (1394)
T ss_pred HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 99998532 1368999999987642 235667999999999999999999999998877543 223344333 35
Q ss_pred HHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Q 000907 789 EEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVC 867 (1230)
Q Consensus 789 ~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~ 867 (1230)
+++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|+|++|||||+|||+.++..+++.|++++++ |+|||+
T Consensus 186 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii 265 (1394)
T TIGR00956 186 DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLV 265 (1394)
T ss_pred HHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 7789999999999999999889999999999999999999999999999999999999999999999999864 999999
Q ss_pred EecCCCHHHHHHHhcCC----------------------CCCccCCCCCCCCccccccCCchhhh----------hhhhc
Q 000907 868 TIHQPSIDIFEAFDAGI----------------------PGVSKIRDGYNPATWMLEVTAPSQEI----------ALGVD 915 (1230)
Q Consensus 868 ~~H~~~~~i~~~fd~~~----------------------~~~~~~~~~~npad~~l~~~~~~~~~----------~~~~~ 915 (1230)
++|||+.+++++||+.. .|. .||++.|||||++|++++++.. ....+
T Consensus 266 ~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~-~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~ 344 (1394)
T TIGR00956 266 AIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGF-KCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQE 344 (1394)
T ss_pred EecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCC-CCCCCCChHHHHHhccChhhhhccccccccCCCCHHH
Confidence 99999999999999811 122 5899999999999998865321 11347
Q ss_pred HHHHHHhhHHHHHHHHHHHHhcCCC---------------CCCccccccCCCCchhHHHHHHHHHHHHHHhhcChHHHHH
Q 000907 916 FAAIYKSSELYRINKALIQELSKPA---------------PGSKELYFANQYPLSFFTQCMACLWKQHWSYSRNPHYTAV 980 (1230)
Q Consensus 916 ~~~~~~~s~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~ 980 (1230)
+++.|++|+.+++..+.++...... ...+.......+..|+|+|+++|++|+++++||||.++.+
T Consensus 345 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~ 424 (1394)
T TIGR00956 345 FETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLF 424 (1394)
T ss_pred HHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8999999988776555443321110 0001112234578899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCchhhhHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHhhhcCCCCChHHHHHHH
Q 000907 981 RFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKGAGMYSPMAYAFAQ 1060 (1230)
Q Consensus 981 ~~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~ 1060 (1230)
|+++++++|+++|++||+++++ +.++++|.|++||++++.++.++.++ +.++.||+||+||+.+|+|++++|++|+
T Consensus 425 r~~~~ii~~li~G~~F~~~~~~---~~~~~~r~g~lf~~~~~~~~~~~~~i-~~~~~eR~i~~re~~~~~Y~~~ay~la~ 500 (1394)
T TIGR00956 425 MVFGNIIMALILSSVFYNLPKN---TSDFYSRGGALFFAILFNAFSSLLEI-ASMYEARPIVEKHRKYALYHPSADAIAS 500 (1394)
T ss_pred HHHHHHHHHHHHHHhhcCCCCC---chhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCcceeeeccccccCHHHHHHHH
Confidence 9999999999999999999864 56789999999999999999887775 4566899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHhhhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcc
Q 000907 1061 VLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVSTLFYGLWNIVSGF 1140 (1230)
Q Consensus 1061 ~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~ 1140 (1230)
+++|+|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++|+..+|+.+++++++++++|+||
T Consensus 501 ~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf 580 (1394)
T TIGR00956 501 IISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGF 580 (1394)
T ss_pred HHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCchhhHHHHhhcHHHHHHHHHHHHhhCCCccccCC-------------------------C---CcHHHHHHhh
Q 000907 1141 IIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQDRLES-------------------------G---ETVKQFLRSY 1192 (1230)
Q Consensus 1141 ~i~~~~ip~~~~w~~~~sp~~y~~~~l~~nef~~~~~~~~~-------------------------~---~~~~~~~~~~ 1192 (1230)
++|+++||+||+|++|+||++|+|||++.|||++..++|.. | .++.+|+...
T Consensus 581 ~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~ 660 (1394)
T TIGR00956 581 AIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLS 660 (1394)
T ss_pred ccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhc
Confidence 99999999999999999999999999999999998887731 0 1456888878
Q ss_pred hCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000907 1193 YGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNF 1227 (1230)
Q Consensus 1193 ~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~ 1227 (1230)
||++.+|+|+|++||++|+++|++++++++++++.
T Consensus 661 ~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 661 FQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred CCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999874
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-87 Score=878.17 Aligned_cols=569 Identities=23% Similarity=0.372 Sum_probs=475.8
Q ss_pred CCCceeEEeeeEEEEecCcc-----------------cccc-c---ccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHH
Q 000907 656 FEPFSLTFDEITYSVDMPQE-----------------MKRR-G---VHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTT 714 (1230)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~-~---~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKST 714 (1230)
.+.+.+.|+|+++....... ..+. + ....++.+|+|+|+.++|||+++|+|||||||||
T Consensus 127 ~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKST 206 (1470)
T PLN03140 127 LPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTT 206 (1470)
T ss_pred CCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHH
Confidence 35678999999987652110 0000 1 1123578999999999999999999999999999
Q ss_pred HHHHHhCCCCCC-eEEEEEEECCeecChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCC-------CCHHHH--
Q 000907 715 LMDVLAGRKTRG-YITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSE-------VNSKTR-- 784 (1230)
Q Consensus 715 Ll~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~-------~~~~~~-- 784 (1230)
|||+|+|+.++. .++|+|.+||.+......++.++||+|+|.+++.+||+|||.|++.++.+.. ...+++
T Consensus 207 LLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~ 286 (1470)
T PLN03140 207 LLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDA 286 (1470)
T ss_pred HHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhc
Confidence 999999987542 4589999999987544446789999999999999999999999987763211 111111
Q ss_pred ----------------------HHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCC
Q 000907 785 ----------------------EMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 842 (1230)
Q Consensus 785 ----------------------~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsg 842 (1230)
+..++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|+++||||||+|
T Consensus 287 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsG 366 (1470)
T PLN03140 287 GIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTG 366 (1470)
T ss_pred cCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcC
Confidence 1235789999999999999999988999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhcCC----------------------CCCccCCCCCCCCcc
Q 000907 843 LDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDAGI----------------------PGVSKIRDGYNPATW 899 (1230)
Q Consensus 843 LD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~~~----------------------~~~~~~~~~~npad~ 899 (1230)
||+.++.++++.|+++++ .|+|+|+++|||+.+++++||+.+ .|+ .||++.|||||
T Consensus 367 LDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf-~cP~~~n~ADF 445 (1470)
T PLN03140 367 LDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGF-KCPERKGTADF 445 (1470)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCC-CCCCCCChHHH
Confidence 999999999999999976 589999999999999999999821 122 58999999999
Q ss_pred ccccCCchhhhh------------hhhcHHHHHHhhHHHHHHHHHHHHhcCCCCCCccccccCCCCchhHHHHHHHHHHH
Q 000907 900 MLEVTAPSQEIA------------LGVDFAAIYKSSELYRINKALIQELSKPAPGSKELYFANQYPLSFFTQCMACLWKQ 967 (1230)
Q Consensus 900 ~l~~~~~~~~~~------------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~ 967 (1230)
++|++++.+... ...++++.|++|+.+++..+.++.........+.....++|..+++.|++.|++|+
T Consensus 446 l~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~ 525 (1470)
T PLN03140 446 LQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKE 525 (1470)
T ss_pred HHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHH
Confidence 999998643211 12468889999987766544332211000001111123458899999999999999
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHhhhc
Q 000907 968 HWSYSRNPHYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVFYREKG 1047 (1230)
Q Consensus 968 ~~~~~R~~~~~~~~~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE~~ 1047 (1230)
++.++|||..+..|+++.+++|+++|++||+++.+..+..+.+.+.|++||++++.++.++.++ +.++.||+||+|||.
T Consensus 526 ~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l-~~~~~~r~vf~ker~ 604 (1470)
T PLN03140 526 WLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAEL-ALMIQRLPVFYKQRD 604 (1470)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccchhHHhhh
Confidence 9999999999999999999999999999999986544445567788999999888888776554 678899999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhhHhhhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Q 000907 1048 AGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMMLVAWTPNHHIASIVS 1127 (1230)
Q Consensus 1048 ~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 1127 (1230)
+++|++++|++|++++++|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++|+..+|+.++
T Consensus 605 ~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~ 684 (1470)
T PLN03140 605 LLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGG 684 (1470)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCCCCchhhHHHHhhcHHHHHHHHHHHHhhCCCcccc---C-CCCcHHHHHHhhhCCCcc--chh
Q 000907 1128 TLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQDRL---E-SGETVKQFLRSYYGFKHD--FLG 1201 (1230)
Q Consensus 1128 ~~~~~~~~l~~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~nef~~~~~~~---~-~~~~~~~~~~~~~~~~~~--~~~ 1201 (1230)
+++++++++|+||++|+++||+||+|++|+||++|+++|++.|||.+..+.+ . +..+.|+.+++.+|++.+ |.|
T Consensus 685 ~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w 764 (1470)
T PLN03140 685 ALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYW 764 (1470)
T ss_pred HHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHhcCcCccccchh
Confidence 9999999999999999999999999999999999999999999997765431 1 122345555578999754 569
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 000907 1202 AVAAVVFVLPSLFAFVFALGIRVLN 1226 (1230)
Q Consensus 1202 ~~~~il~~~~~~~~~~~~~~l~~~~ 1226 (1230)
+++++|+||+++|++++++++++++
T Consensus 765 ~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 765 IGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999987
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-81 Score=767.20 Aligned_cols=541 Identities=25% Similarity=0.457 Sum_probs=476.2
Q ss_pred CceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-eEEEEEEECCeecChhcccceEEEEccCCccCCCCC
Q 000907 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG-YITGNITISGYPKNQETFTRISGYCEQNDIHSPYVT 762 (1230)
Q Consensus 684 ~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lt 762 (1230)
....+|+|+|+.++|||++.++||+||||||||++|+|..+.. ...|+|.+||.+.+...-++.++|++|+|.|+|.+|
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeE
Confidence 3457999999999999999999999999999999999976532 235799999998765444789999999999999999
Q ss_pred HHHHHHHHHHhcCCCCC----CHHHHH-HHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEe
Q 000907 763 VYESLLYSAWLRLSSEV----NSKTRE-MFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 837 (1230)
Q Consensus 763 v~e~l~~~~~~~~~~~~----~~~~~~-~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlD 837 (1230)
|+|+|.|+++++.+... .+.++. +..+.+++.+||++|+|+++|+...||+||||||||++|.+++.+|+++++|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 99999999999987322 222222 2577899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhcCC---------C-------------CCccCCCCC
Q 000907 838 EPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDAGI---------P-------------GVSKIRDGY 894 (1230)
Q Consensus 838 EPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~~~---------~-------------~~~~~~~~~ 894 (1230)
|+|+|||+.++.++++.||++++. +.|+++++|||+.++|++||+.+ . |+ .||+..
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf-~cP~r~ 364 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGF-KCPPRK 364 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCc-cCCCcc
Confidence 999999999999999999999854 89999999999999999999921 1 12 589999
Q ss_pred CCCccccccCCchhhhh------------hhhcHHHHHHhhHHHHHHHHHHHHhcCCCCCCccccccCCCCchhHHHHHH
Q 000907 895 NPATWMLEVTAPSQEIA------------LGVDFAAIYKSSELYRINKALIQELSKPAPGSKELYFANQYPLSFFTQCMA 962 (1230)
Q Consensus 895 npad~~l~~~~~~~~~~------------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 962 (1230)
++|||+.++++..++.+ ...++.+.|.+|+.+++.....+........++......+|..++|.|++.
T Consensus 365 ~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~ 444 (1391)
T KOG0065|consen 365 GTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKA 444 (1391)
T ss_pred CHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHH
Confidence 99999999998321110 125789999999988876544432221112223334456789999999999
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHH
Q 000907 963 CLWKQHWSYSRNPHYTAVRFLFTIFISLIFGTMFWDMGTKTTKQQDLFNTMGFMYVAVYFLGVLNVSSVQPVVDLERSVF 1042 (1230)
Q Consensus 963 l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~ 1042 (1230)
|+.|.++.+.||..++..++++.+++|+++|++|++.+. .+..+.+.|.|++||++++..+.++.++ +...+.||||
T Consensus 445 c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi-~~~~~~~pv~ 521 (1391)
T KOG0065|consen 445 CTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEI-ALTFQRLPVF 521 (1391)
T ss_pred HHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHH-HHHHhhcchH
Confidence 999999999999999999999999999999999999983 4567789999999999999999988887 4455889999
Q ss_pred HhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhHhhhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Q 000907 1043 YREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLIVYAMIGFEWTAAKFFWFLFFMFFSLLYFTFFGMMLVAWTPNHHI 1122 (1230)
Q Consensus 1043 ~rE~~~~~Y~~~~y~~a~~l~~~p~~~~~~~~~~~i~Y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1122 (1230)
+|||...+|++++|.++.+++++|+.++.+++|.+|.||++||++++++||.|+++++++.+|++++++++++++++...
T Consensus 522 ~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~ 601 (1391)
T KOG0065|consen 522 YKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSI 601 (1391)
T ss_pred HHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCchhhHHHHhhcHHHHHHHHHHHHhhCCCccccCC-CC------------------
Q 000907 1123 ASIVSTLFYGLWNIVSGFIIPRTRIPVWWRWSYWANPIAWTLYGFFASQFGDVQDRLES-GE------------------ 1183 (1230)
Q Consensus 1123 a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~~sp~~y~~~~l~~nef~~~~~~~~~-~~------------------ 1183 (1230)
|+.++++.+++..+++||+||.++||+||+|++|+||+.|++|+++.|||++.+++|++ ||
T Consensus 602 An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~ 681 (1391)
T KOG0065|consen 602 ANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGAT 681 (1391)
T ss_pred HhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccc
Confidence 99999999999999999999999999999999999999999999999999999999961 10
Q ss_pred ------cHHHHHHhhhCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000907 1184 ------TVKQFLRSYYGFKHDFLGAVAAVVFVLPSLFAFVFALGIRVLNFQ 1228 (1230)
Q Consensus 1184 ------~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~ 1228 (1230)
.+.+|++.+|++++.|.|+++||++||.++|.++..+++.|++.-
T Consensus 682 ~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~ 732 (1391)
T KOG0065|consen 682 LGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPL 732 (1391)
T ss_pred cCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 345788888999999999999999999999999999999998854
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-77 Score=732.55 Aligned_cols=531 Identities=28% Similarity=0.489 Sum_probs=449.8
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhc
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAK 80 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~ 80 (1230)
||+|+||..++..++|+|++||++.+...+++.+|||+|||.++|+|||+|||.|+|++|.+.+ ....++
T Consensus 73 L~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~-------~~~~~k--- 142 (613)
T KOG0061|consen 73 LNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS-------LSKEEK--- 142 (613)
T ss_pred HHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC-------CCHHHH---
Confidence 6899999988889999999999888887889999999999999999999999999999986542 222222
Q ss_pred cCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCccc
Q 000907 81 IIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGL 160 (1230)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGL 160 (1230)
+++||.++++|||++|+||+||+...||||||||||||||.+|+.||+|||||||||||
T Consensus 143 ---------------------~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGL 201 (613)
T KOG0061|consen 143 ---------------------RERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGL 201 (613)
T ss_pred ---------------------HHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCc
Confidence 35699999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCCchhhhh
Q 000907 161 DSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQ 240 (1230)
Q Consensus 161 Ds~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~~f~~~G~~~p~~~n~ad~l~ 240 (1230)
||++|.++++.||++|+. |+|||+|||||+++++++||++++|++|+++|+|+++++.+||++.|++||++.||+||+.
T Consensus 202 DS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l 280 (613)
T KOG0061|consen 202 DSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLL 280 (613)
T ss_pred chhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHH
Confidence 999999999999999986 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCch--hhhhhhhcCCCCCccCCHHHHHHHHHhchhhhhHhhhhCCCCCCCCCCCcccccCCcccCHHHHHHHHHHHH
Q 000907 241 EVTSRK--DQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTTRKYGVGKKELLKACFSRE 318 (1230)
Q Consensus 241 ~~~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R~ 318 (1230)
++.+.+ ..+.... .......+.++..+...+....... .-.... ........+++.|+..+++|.
T Consensus 281 ~l~s~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~s~~~q~~~L~~R~ 347 (613)
T KOG0061|consen 281 DLLSVDSGTRELEEA--------VRIAKLINKFSQTDNLKKTLEALEK----SLSTSK-KVEIGTSPSWWTQFKILLKRS 347 (613)
T ss_pred HHHccCCCchhHHhH--------HHHHHHhhhccccchhhhhHHHHhh----hccccc-ccccccCCcHHHHHHHHHHHH
Confidence 988743 1110000 0000001111100000000000000 000000 000111578999999999999
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccchhhHHHHHHHHHHHHHHH-HHHHHhccchhHHHhhh
Q 000907 319 HLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVIYTGALFFILTTITFNGMA-EISMTIAKLPVFYKQRD 397 (1230)
Q Consensus 319 ~~~~~r~~~~~~~~~~~~~~~~li~g~if~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~-~~~~~~~~~~v~~rer~ 397 (1230)
+.+.+|++.....|.++.+.+++++|.+|++.+.+.... ....|++|+.+.+..+..+. .++.+..+++++.||+.
T Consensus 348 ~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~---~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~ 424 (613)
T KOG0061|consen 348 LKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGI---QNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETS 424 (613)
T ss_pred hHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHH---HHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHh
Confidence 999999999999999999999999999999987554443 25678888888888777665 47788899999999999
Q ss_pred CCCCcchHHHHhHHHHhhhHHHHHHHHHHhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 000907 398 LRFYPSWAYALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTFG 477 (1230)
Q Consensus 398 ~~~y~~~~y~la~~i~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~l~~~i~~~~~~~~ia~~~~ 477 (1230)
.++|+.++|++|+.++++|+.++.+++|+.++|||+|++++..+|+++.++.++..+++++++.+++++.++...|.+++
T Consensus 425 ~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~ 504 (613)
T KOG0061|consen 425 SGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLG 504 (613)
T ss_pred cCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccCcCCcccccchhhhhcHHHHHHHHHHHhhcCCCcccccCC--CCCCcchHHHHhhcCcccCCcch
Q 000907 478 SLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKILP--NKTKPLGIEVLDSRGFFTDAYWY 555 (1230)
Q Consensus 478 ~~~~~~~~l~~Gf~i~~~~ip~~~~w~~yisp~~y~~~al~~nef~~~~~~~~~~--~~~~~~g~~~l~~~~~~~~~~~~ 555 (1230)
+++.+++++++||+++.+.+|.||+|+.|+|+.+|++|+++.|+|.+....|... ..+...|.+++...++... ..
T Consensus 505 ~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~ 582 (613)
T KOG0061|consen 505 PVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDS--SF 582 (613)
T ss_pred HHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCccc--cc
Confidence 9999999999999999999999999999999999999999999998733344332 3456779999999888755 46
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000907 556 WLGVGALTGFIILFQFGFTLALSFLN 581 (1230)
Q Consensus 556 w~~~~~l~~~~~~~~~~~~~~l~~~~ 581 (1230)
|.++.++.++.++|++.+++++.+..
T Consensus 583 ~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 583 WLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 89999999999999999999988753
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-73 Score=701.01 Aligned_cols=536 Identities=27% Similarity=0.430 Sum_probs=449.1
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhc
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAK 80 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~ 80 (1230)
||+|+|+.......+|+|++||.+.+....++.+|||+|+|.+++++||+|||.|+++++.+.+. ...+
T Consensus 68 L~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~-------~~~~---- 136 (617)
T TIGR00955 68 MNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRV-------TKKE---- 136 (617)
T ss_pred HHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCC-------CHHH----
Confidence 57899998765567999999999987555678899999999999999999999999987643211 1111
Q ss_pred cCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCc-cccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 81 IIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEM-LRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~-~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
.++.++.+++.+||++++||.||+++ .++|||||||||+||+||+++|+|+||||||||
T Consensus 137 --------------------~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 137 --------------------KRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred --------------------HHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 12357899999999999999999864 789999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCCchhhh
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFL 239 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~~f~~~G~~~p~~~n~ad~l 239 (1230)
||+.++.++++.|+++++ .|+|+|+++|||+++++++||++++|++|+++|+||++++.+||+++|++||++.||+||+
T Consensus 197 LD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~ 275 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFY 275 (617)
T ss_pred hhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHH
Confidence 999999999999999986 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCchhhhhhhhcCCCCCccCCHHHHHHHHHhchhhhhHhhhhCCCCCCCC---CCCcccccCCcccCHHHHHHHHHH
Q 000907 240 QEVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKN---SHPAALTTRKYGVGKKELLKACFS 316 (1230)
Q Consensus 240 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~ 316 (1230)
+++.+...... .. ...+.+++.+.+++++.+.+............. ..........+..+++.|+..+++
T Consensus 276 ~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 348 (617)
T TIGR00955 276 VQVLAVIPGSE-----NE--SRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLK 348 (617)
T ss_pred HHHhhcCcccc-----cc--hHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHH
Confidence 99876432211 00 011234455666665544443322211111000 000011123456788999999999
Q ss_pred HHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccchhhHHHHHHHHHHHHHH-HHHHHHhccchhHHHh
Q 000907 317 REHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVIYTGALFFILTTITFNGM-AEISMTIAKLPVFYKQ 395 (1230)
Q Consensus 317 R~~~~~~r~~~~~~~~~~~~~~~~li~g~if~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~-~~~~~~~~~~~v~~re 395 (1230)
|.++..+||+..+..++++.+++++++|++|++.+.+.. +.....|++|+++.+.++.++ ..++....+|++++||
T Consensus 349 R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~---~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE 425 (617)
T TIGR00955 349 RSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQK---GVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRE 425 (617)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999875433 334467888988888777765 4455666899999999
Q ss_pred hhCCCCcchHHHHhHHHHhhhHHHHHHHHHHhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 000907 396 RDLRFYPSWAYALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANT 475 (1230)
Q Consensus 396 r~~~~y~~~~y~la~~i~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~l~~~i~~~~~~~~ia~~ 475 (1230)
+..++|++++|++++.+.++|+.++.+++|.+++|||+|+++++.+|+.++++.++...++.+++.++++++++...|..
T Consensus 426 ~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~ 505 (617)
T TIGR00955 426 TRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALT 505 (617)
T ss_pred hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccCcCCcccccchhhhhcHHHHHHHHHHHhhcCCCcc-cccCCC---CCCcchHHHHhhcCcccC
Q 000907 476 FGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSW-KKILPN---KTKPLGIEVLDSRGFFTD 551 (1230)
Q Consensus 476 ~~~~~~~~~~l~~Gf~i~~~~ip~~~~w~~yisp~~y~~~al~~nef~~~~~-~~~~~~---~~~~~g~~~l~~~~~~~~ 551 (1230)
+++++++++++|+||+++.+++|+||+|++|+||++|++++++.|||.+..+ .|...+ .+...|.++++.+|+..+
T Consensus 506 ~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~ 585 (617)
T TIGR00955 506 VGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNA 585 (617)
T ss_pred HHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcc
Confidence 9999999999999999999999999999999999999999999999988765 333211 234568999999998765
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 000907 552 AYWYWLGVGALTGFIILFQFGFTLALSFL 580 (1230)
Q Consensus 552 ~~~~w~~~~~l~~~~~~~~~~~~~~l~~~ 580 (1230)
+.|.++++++++.++|+++.++++++.
T Consensus 586 --~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 586 --DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999998864
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-70 Score=676.87 Aligned_cols=533 Identities=21% Similarity=0.335 Sum_probs=420.7
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhc
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAK 80 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~ 80 (1230)
||+|+|+++.. ..+|+|++||++.... .++.+|||+|+|.+++.+||+|||.|++.++.+.. ....+
T Consensus 111 L~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~-------~~~~~---- 177 (659)
T PLN03211 111 LNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKS-------LTKQE---- 177 (659)
T ss_pred HHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCC-------CCHHH----
Confidence 57899987543 3699999999987543 24568999999999999999999999887653211 01111
Q ss_pred cCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCccc
Q 000907 81 IIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGL 160 (1230)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGL 160 (1230)
.++.++++++++||++++||.||+...++|||||||||+||++|+++|+||+||||||||
T Consensus 178 --------------------~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgL 237 (659)
T PLN03211 178 --------------------KILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGL 237 (659)
T ss_pred --------------------HHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCc
Confidence 123478899999999999999999989999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCCchhhhh
Q 000907 161 DSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQ 240 (1230)
Q Consensus 161 Ds~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~~f~~~G~~~p~~~n~ad~l~ 240 (1230)
|+.++.++++.|+++++ .|+|+++++|||+++++++||+|++|++|+++|+|+++++.+||+++|++||++.|||||++
T Consensus 238 D~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~l 316 (659)
T PLN03211 238 DATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLL 316 (659)
T ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHH
Confidence 99999999999999986 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCchhhhhhhhcCCCCCccCCHHHHHHHHHhchhhhhHhhhhC---CC--CCCC---CCCCc-ccccCCcccCHHHHH
Q 000907 241 EVTSRKDQEQYWVRNDEPYRFVTVKEFVHAFQSFHVGRKLGDELG---IP--FDKK---NSHPA-ALTTRKYGVGKKELL 311 (1230)
Q Consensus 241 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~---~~--~~~~---~~~~~-~~~~~~~~~~~~~~~ 311 (1230)
++.+...........+.+ ...++..+.|++... .+..+... .. ..+. ..... ......+..+++.|+
T Consensus 317 dv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~ 392 (659)
T PLN03211 317 DLANGVCQTDGVSEREKP---NVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQF 392 (659)
T ss_pred HHcCccccCCCccccccc---hHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHH
Confidence 998754321000000000 111223344432111 11000000 00 0000 00000 001112345789999
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccchhhHHHHHHHHHHH-HHHHHHHHHhccch
Q 000907 312 KACFSREHLLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVIYTGALFFILTTITF-NGMAEISMTIAKLP 390 (1230)
Q Consensus 312 ~~l~~R~~~~~~r~~~~~~~~~~~~~~~~li~g~if~~~~~~~~~~~~~~~~~g~lf~~~~~~~~-~~~~~~~~~~~~~~ 390 (1230)
..+++|.+++ +|++.....|+++.+++|+++|++|++.+ . .+.+...|++||++.+..+ ..+..++.+..+|+
T Consensus 393 ~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~--~---~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~ 466 (659)
T PLN03211 393 SILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD--F---RDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERA 466 (659)
T ss_pred HHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 9999999887 78888888999999999999999999874 1 2345568999998777665 44567777888999
Q ss_pred hHHHhhhCCCCcchHHHHhHHHHhhhHHHHHHHHHHhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 000907 391 VFYKQRDLRFYPSWAYALPAWILKIPISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSM 470 (1230)
Q Consensus 391 v~~rer~~~~y~~~~y~la~~i~~~p~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~l~~~i~~~~~~~ 470 (1230)
+++|||..++|++++|++|+.++++|+.++.+++|+.++|||+|+++++++|+.|+++.+++.+++++++.+++++++++
T Consensus 467 v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~ 546 (659)
T PLN03211 467 IFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDA 546 (659)
T ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccCcCCcccccchhhhhcHHHHHHHHHHHhhcCCCc-----ccccCCCCCCcchHHHHhh
Q 000907 471 VVANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNS-----WKKILPNKTKPLGIEVLDS 545 (1230)
Q Consensus 471 ~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~w~~yisp~~y~~~al~~nef~~~~-----~~~~~~~~~~~~g~~~l~~ 545 (1230)
..|+.+++++.+++++|+||+++ ++|+||+|++|+||++|++++++.|||.+.. +.|..+......+..++..
T Consensus 547 ~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~ 624 (659)
T PLN03211 547 KKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEE 624 (659)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchh
Confidence 99999999999999999999997 7999999999999999999999999997643 2332211000001112222
Q ss_pred cCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000907 546 RGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLN 581 (1230)
Q Consensus 546 ~~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~l~~~~ 581 (1230)
..+. ....|.++.++++++++++++.+++++..+
T Consensus 625 ~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 625 DVAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred hhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2222 234788999999999999999999887543
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-66 Score=636.72 Aligned_cols=196 Identities=29% Similarity=0.427 Sum_probs=165.0
Q ss_pred cCCCCceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEE
Q 000907 654 LPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNIT 733 (1230)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~ 733 (1230)
.|.-...++++||++.||.+ .+.+||+|+|+++++|+.+||+|||||||||.+.+|-..+++ ..|.|.
T Consensus 981 ~~~~~G~I~~~~V~F~YPsR----------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp--~~G~V~ 1048 (1228)
T KOG0055|consen 981 LPNVKGDIEFRNVSFAYPTR----------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDP--DAGKVK 1048 (1228)
T ss_pred cccceeEEEEeeeEeeCCCC----------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCC--CCCeEE
Confidence 33445689999999999854 356799999999999999999999999999999999988775 479999
Q ss_pred ECCeecCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH-------cCCCccccc
Q 000907 734 ISGYPKNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMEL-------VELNPLRQA 803 (1230)
Q Consensus 734 ~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-------l~l~~~~~~ 803 (1230)
+||.+++. ..+|+++|.|.|+|.||. .|++||+.|+. . +.+..+ +.+..+. .+|.+-.||
T Consensus 1049 IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~----~-~vs~~e----Ii~Aak~ANaH~FI~sLP~GyDT 1118 (1228)
T KOG0055|consen 1049 IDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS----E-EVSEEE----IIEAAKLANAHNFISSLPQGYDT 1118 (1228)
T ss_pred ECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC----C-CCCHHH----HHHHHHHhhhHHHHhcCcCcccC
Confidence 99998654 567899999999999986 69999999971 1 123222 2222222 256677899
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 804 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 804 ~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
.+|+.+. +||||||||++|||||++||+||||||.||+||+++.+.|++.|.+. ..|||.|++.|++|
T Consensus 1119 ~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a-~~gRT~IvIAHRLS 1186 (1228)
T KOG0055|consen 1119 RVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRA-MEGRTTIVIAHRLS 1186 (1228)
T ss_pred ccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHh-hcCCcEEEEecchh
Confidence 9997664 79999999999999999999999999999999999999999999886 57999999999998
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-58 Score=607.65 Aligned_cols=201 Identities=27% Similarity=0.396 Sum_probs=173.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+.. +++.+|+|||+.|++||++||+||||||||||+|+|+|..++ .+|+|.++|+++
T Consensus 1937 ~L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~p--tsG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV--TSGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEEC
Confidence 4889999887731 135799999999999999999999999999999999998765 379999999886
Q ss_pred Ch--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000907 740 NQ--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 740 ~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 817 (1230)
.. ...++.+|||+|++.+++.+||+|++.+.+.++. ...++.++.++++++.++|.+..|+.+ +.|||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLA-----GTYSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHH
Confidence 42 2345679999999999999999999998776653 233444566889999999998888775 4699999
Q ss_pred HHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 818 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 818 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||++||+||+.+|+||||||||+|||+.+++.+++.|++++++|+|||++||+.. ++..+.|+
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDr 2139 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTR 2139 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999998878999999999976 66677787
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-58 Score=581.96 Aligned_cols=191 Identities=23% Similarity=0.305 Sum_probs=159.2
Q ss_pred CceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCe
Q 000907 658 PFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGY 737 (1230)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~ 737 (1230)
...++|+|++.+|. ++...+|||||++|+|||.+||+|++|||||||.++|.+...+ .+|+|.|||.
T Consensus 1136 ~G~I~f~~~~~RYr-----------p~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~--~~G~I~IDgv 1202 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYR-----------PNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEP--AEGEILIDGV 1202 (1381)
T ss_pred CCeEEEEEeEEEeC-----------CCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCc--cCCeEEEcCe
Confidence 34799999999884 2345799999999999999999999999999999999987764 4799999999
Q ss_pred ecCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccC
Q 000907 738 PKNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL-------RQALVGL 807 (1230)
Q Consensus 738 ~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~ 807 (1230)
++.. .++|++++.+||||.+|. -|+|.||.- -.+..++.+.+++|..+|.+. .|..+.+
T Consensus 1203 dI~~igL~dLRsrlsIIPQdPvLFs-GTvR~NLDP----------f~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~e 1271 (1381)
T KOG0054|consen 1203 DISKIGLHDLRSRLSIIPQDPVLFS-GTVRFNLDP----------FDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSE 1271 (1381)
T ss_pred ecccccHHHHHhcCeeeCCCCceec-CccccccCc----------ccccCHHHHHHHHHHhChHHHHhhCCcCCCceecC
Confidence 8754 578899999999999986 599999842 122234456777777766543 3444433
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCH
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSI 874 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~ 874 (1230)
+..++|-||||.+|+||||+++++||+|||+|+++|++|...|+++||+.. +++|||.+.|+.+.
T Consensus 1272 -gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T 1336 (1381)
T KOG0054|consen 1272 -GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT 1336 (1381)
T ss_pred -CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch
Confidence 345799999999999999999999999999999999999999999999865 58999999999874
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-55 Score=591.98 Aligned_cols=196 Identities=24% Similarity=0.307 Sum_probs=162.7
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++|+|++++|.. +.+.+|+|+|++|+|||.+||+|+||||||||+++|.|..++ .+|+|.+||.+
T Consensus 1236 g~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p--~~G~I~IDG~d 1302 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL--ERGRILIDGCD 1302 (1622)
T ss_pred CcEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCEe
Confidence 46999999999841 224699999999999999999999999999999999998775 47999999998
Q ss_pred cCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCC
Q 000907 739 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-------PLRQALVGLP 808 (1230)
Q Consensus 739 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~ 808 (1230)
+.. ..+|+.+++|||++.+|+. |++|||.+.. ..+ ++.+.++++..++. .-.|+.+|..
T Consensus 1303 I~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge~ 1371 (1622)
T PLN03130 1303 ISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHN----DADLWESLERAHLKDVIRRNSLGLDAEVSEA 1371 (1622)
T ss_pred cccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CCC----HHHHHHHHHHcCcHHHHHhCccccCccccCC
Confidence 653 5678899999999999875 9999997531 112 23456666666653 2346667654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+ .+||||||||++|||||+++|+||+||||||+||+.+.+.|.+.|++.. +++|+|+++|+++. + ..+|+
T Consensus 1372 G-~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t-I-~~~Dr 1441 (1622)
T PLN03130 1372 G-ENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT-I-IDCDR 1441 (1622)
T ss_pred C-CCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH-H-HhCCE
Confidence 3 4699999999999999999999999999999999999999999999874 58999999999874 3 44787
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-55 Score=585.54 Aligned_cols=196 Identities=22% Similarity=0.275 Sum_probs=162.4
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++|+|++++|+. +.+.+|+|+|++|+|||.+||+||||||||||+++|.|..++ .+|+|.+||.+
T Consensus 1233 g~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p--~~G~I~IdG~d 1299 (1495)
T PLN03232 1233 GSIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL--EKGRIMIDDCD 1299 (1495)
T ss_pred CcEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCceEEECCEE
Confidence 36999999999841 234699999999999999999999999999999999998775 47999999998
Q ss_pred cC---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000907 739 KN---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLP 808 (1230)
Q Consensus 739 ~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 808 (1230)
+. ...+|+.++||||++.+++. |++|||.+.. ..+ ++.+.++++..++.+ -.|+.+|..
T Consensus 1300 i~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1368 (1495)
T PLN03232 1300 VAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHN----DADLWEALERAHIKDVIDRNPFGLDAEVSEG 1368 (1495)
T ss_pred hhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecCC
Confidence 64 35678899999999999874 9999997531 112 234566777666643 346666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+ .+||||||||++|||||+++|+||+||||||+||+++.+.|.+.|++.. +++|+|+++|+++. ...+|+
T Consensus 1369 G-~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~t--i~~~Dr 1438 (1495)
T PLN03232 1369 G-ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNT--IIDCDK 1438 (1495)
T ss_pred C-CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH--HHhCCE
Confidence 3 4699999999999999999999999999999999999999999999874 58999999999863 345787
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-54 Score=574.26 Aligned_cols=201 Identities=20% Similarity=0.314 Sum_probs=165.3
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC------------
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG------------ 726 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~------------ 726 (1230)
..++|+||+|+|+.. +++.+|+|+|++|+||+.+||+||||||||||+++|.|.+++.
T Consensus 1164 g~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~ 1233 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHT 1233 (1466)
T ss_pred ceEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccc
Confidence 369999999998521 2246999999999999999999999999999999999987651
Q ss_pred ----------------------------------------eEEEEEEECCeecC---hhcccceEEEEccCCccCCCCCH
Q 000907 727 ----------------------------------------YITGNITISGYPKN---QETFTRISGYCEQNDIHSPYVTV 763 (1230)
Q Consensus 727 ----------------------------------------~~~G~i~~~g~~~~---~~~~~~~~~~v~q~~~~~~~ltv 763 (1230)
+.+|+|.+||.++. ...+|+.+|||+|++.+|+ .|+
T Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTI 1312 (1466)
T PTZ00265 1234 NDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSI 1312 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccH
Confidence 13799999999864 3567889999999999885 799
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEE
Q 000907 764 YESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL-------NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 836 (1230)
Q Consensus 764 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illl 836 (1230)
+|||.++. + +.+. +.++++++..++ .+-.||.+|..+ ..||||||||++|||||+++|+||+|
T Consensus 1313 reNI~~g~----~-~at~----eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G-~~LSGGQkQRIaIARALlr~p~ILLL 1382 (1466)
T PTZ00265 1313 YENIKFGK----E-DATR----EDVKRACKFAAIDEFIESLPNKYDTNVGPYG-KSLSGGQKQRIAIARALLREPKILLL 1382 (1466)
T ss_pred HHHHhcCC----C-CCCH----HHHHHHHHHcCCHHHHHhCccccCCccCCCC-CcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999851 1 2222 235556665554 344588888654 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHHHhc
Q 000907 837 DEPTSGLDARAAAVVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 837 DEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||+||+.+++.|++.|+++. .+++|+|+++|+++ .....|+
T Consensus 1383 DEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~ 1427 (1466)
T PTZ00265 1383 DEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDK 1427 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCE
Confidence 99999999999999999999886 36899999999985 3456777
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-53 Score=568.11 Aligned_cols=196 Identities=19% Similarity=0.214 Sum_probs=162.3
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++|+|++++|+. +...+|+|||++|+|||.+||+|+||||||||+++|.|..++ .+|+|.+||.+
T Consensus 1283 g~I~f~nVsf~Y~~-----------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~--~~G~I~IdG~d 1349 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRE-----------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES--AEGEIIIDGLN 1349 (1522)
T ss_pred CcEEEEEEEEEeCC-----------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC--CCCeEEECCEE
Confidence 46999999999852 123599999999999999999999999999999999998775 47999999998
Q ss_pred cCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000907 739 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLP 808 (1230)
Q Consensus 739 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 808 (1230)
+.. ..+|+.+++|||++.+|+. |++|||.... ..+ ++.+.++++..++.+ -.|+.+|..
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1418 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYS----DEEVWWALELAHLKTFVSALPDKLDHECAEG 1418 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCC----HHHHHHHHHHcCcHHHHhhCccCCCceecCC
Confidence 653 5678899999999999975 9999996211 122 233566777776643 346667654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+ .+||||||||++|||||+++|+||+||||||+||+++...|.+.|++.. +++|||+++|+++. ...+|+
T Consensus 1419 G-~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~t--i~~~Dr 1488 (1522)
T TIGR00957 1419 G-ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNT--IMDYTR 1488 (1522)
T ss_pred C-CcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHhCCE
Confidence 3 4699999999999999999999999999999999999999999998864 58999999999863 345787
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-52 Score=478.53 Aligned_cols=189 Identities=28% Similarity=0.357 Sum_probs=158.1
Q ss_pred CceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec--C---hhcccceEEEEccCC--c
Q 000907 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK--N---QETFTRISGYCEQND--I 756 (1230)
Q Consensus 684 ~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~--~---~~~~~~~~~~v~q~~--~ 756 (1230)
+...+++||||++++||++||+|+||||||||.++|+|+.+| .+|+|.++|.+. + ....++.+-+++||+ .
T Consensus 302 ~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~S 379 (539)
T COG1123 302 GEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSS 379 (539)
T ss_pred cceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcccccccchhhhhhhheEEEEeCcccc
Confidence 345799999999999999999999999999999999998876 479999999762 1 123456777888876 6
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeE
Q 000907 757 HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 835 (1230)
Q Consensus 757 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~ill 835 (1230)
+.|.+||++.+......... ....++++++.++++..+|.. ..+++ +++||||||||++|||||+.+|++|+
T Consensus 380 LnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~elSGGQrQRvaIARALa~~P~lli 452 (539)
T COG1123 380 LNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPEFLDRY-----PHELSGGQRQRVAIARALALEPKLLI 452 (539)
T ss_pred cCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHHHHhcC-----chhcCcchhHHHHHHHHHhcCCCEEE
Confidence 88999999999877554332 235566778999999999985 34443 56899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 836 MDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 836 lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+|||||.||+..+..|.++|+++.++ |.|.|++|||.. -+-...|+
T Consensus 453 ~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~dr 499 (539)
T COG1123 453 LDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADR 499 (539)
T ss_pred ecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCce
Confidence 99999999999999999999999765 999999999976 34456676
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-51 Score=546.27 Aligned_cols=196 Identities=24% Similarity=0.265 Sum_probs=163.4
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..|+|+|++++|+. +...+|+||||+|+|||.+||+|+||||||||+++|.|..++ .+|+|.+||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p--~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV--CGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEE
Confidence 46999999999842 224599999999999999999999999999999999998775 47999999998
Q ss_pred cCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCC
Q 000907 739 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL-------RQALVGLP 808 (1230)
Q Consensus 739 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~ 808 (1230)
+.. ..+|+.++||||++.+|+. |++|||... ...+ ++.+.++++..++.+. .|+.+|..
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~ 1442 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEAS----SAEVWAALELVGLRERVASESEGIDSRVLEG 1442 (1560)
T ss_pred cccCCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCCC----HHHHHHHHHHCCChHHHhhCcccccccccCC
Confidence 653 5678899999999999874 999999531 1122 3446777887777543 46667654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhC-CCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~-p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+ .+||||||||++|||||+++ |+||+||||||+||+++.+.|.+.|++.. +++|||+++|+++ ....+|+
T Consensus 1443 G-~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~Dr 1513 (1560)
T PTZ00243 1443 G-SNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDK 1513 (1560)
T ss_pred c-CcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCE
Confidence 3 46999999999999999996 89999999999999999999999998864 5899999999985 4466887
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-50 Score=540.12 Aligned_cols=195 Identities=21% Similarity=0.242 Sum_probs=163.1
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++|+|++++|+. +.+.+|+|||++|+|||.+||+|+||||||||+++|.|..+ .+|+|.+||.+
T Consensus 1216 g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 46999999999852 23569999999999999999999999999999999999875 37999999998
Q ss_pred cCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000907 739 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLP 808 (1230)
Q Consensus 739 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 808 (1230)
+.. ..+|+.++||||++.+|+. |+||||.... .. .++.+.++++..++.+ -.|+.+|..
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~----tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~ 1350 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QW----SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG 1350 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------CC----CHHHHHHHHHHCCCHHHHHhCccccccccccC
Confidence 753 4678899999999999974 9999995321 11 2345677888877743 346666653
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
..+||||||||++|||||+++|+||+||||||+||+.+...|++.|++.. +++|||+++|+++ ....+|+
T Consensus 1351 -G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~Dr 1420 (1490)
T TIGR01271 1351 -GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQ 1420 (1490)
T ss_pred -CCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCE
Confidence 34699999999999999999999999999999999999999999999864 5799999999985 3455887
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-50 Score=489.37 Aligned_cols=190 Identities=20% Similarity=0.338 Sum_probs=155.0
Q ss_pred eeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh----hcccceEEEEccCC---ccC
Q 000907 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ----ETFTRISGYCEQND---IHS 758 (1230)
Q Consensus 686 ~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~---~~~ 758 (1230)
+.+|+|+|+++++||+++|+||||||||||+|+|+|..++ +.+|+|.++|.++.. ...++.++|++|++ .++
T Consensus 275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 353 (506)
T PRK13549 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIV 353 (506)
T ss_pred cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCc
Confidence 4589999999999999999999999999999999998652 137999999987532 12345689999985 477
Q ss_pred CCCCHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeE
Q 000907 759 PYVTVYESLLYSAWLRLSS--EVNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 835 (1230)
Q Consensus 759 ~~ltv~e~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~ill 835 (1230)
+.+||.||+.+........ ........+.++++++.+++. +..++.+ +.||||||||++||+||+.+|++|+
T Consensus 354 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrv~lA~al~~~p~lll 428 (506)
T PRK13549 354 PVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI-----ARLSGGNQQKAVLAKCLLLNPKILI 428 (506)
T ss_pred CCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc-----ccCCHHHHHHHHHHHHHhhCCCEEE
Confidence 8899999998753211110 012233445688999999996 4566654 4799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 836 MDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 836 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||+|||+.+++.+.+.|++++++|+|||++||++. ++.+..|+
T Consensus 429 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~ 474 (506)
T PRK13549 429 LDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDR 474 (506)
T ss_pred EcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCE
Confidence 99999999999999999999999888999999999986 56667777
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-50 Score=490.32 Aligned_cols=187 Identities=22% Similarity=0.368 Sum_probs=153.5
Q ss_pred EeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh----hcccceEEEEccC---CccCCC
Q 000907 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ----ETFTRISGYCEQN---DIHSPY 760 (1230)
Q Consensus 688 iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~---~~~~~~ 760 (1230)
+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.+... ...++.+||++|+ ..+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 355 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR--AGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPN 355 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCC
Confidence 89999999999999999999999999999999998765 37999999987532 1234578999998 467889
Q ss_pred CCHHHHHHHHHHhc---CCC--C-CCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000907 761 VTVYESLLYSAWLR---LSS--E-VNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSI 833 (1230)
Q Consensus 761 ltv~e~l~~~~~~~---~~~--~-~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~i 833 (1230)
+||.||+.+....+ ... . .......+.++++++.+++. +..++.+ ..|||||||||+|||+|+.+|++
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~l 430 (510)
T PRK09700 356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI-----TELSGGNQQKVLISKWLCCCPEV 430 (510)
T ss_pred CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc-----ccCChHHHHHHHHHHHHhcCCCE
Confidence 99999998753211 000 0 11222335578899999996 6666654 46999999999999999999999
Q ss_pred eEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 834 IFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 834 lllDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||||+|||+.++..+.+.|++++++|.|||++|||+. .+.+..|+
T Consensus 431 LlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~ 478 (510)
T PRK09700 431 IIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDR 478 (510)
T ss_pred EEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCE
Confidence 9999999999999999999999999878999999999986 45566676
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-49 Score=491.43 Aligned_cols=211 Identities=21% Similarity=0.211 Sum_probs=167.7
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
-++++|+++.+...... .....+.+.+|+||||+|++||+++|+|+||||||||+++|+|..++ .+|+|.++|.++
T Consensus 313 ~L~~~~l~~~y~~~~~~--~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~i 388 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGL--LNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES--QGGEIIFNGQRI 388 (623)
T ss_pred eEEEeeeEEEEcCCCcc--ccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCcEEEECCEEC
Confidence 37889999887421000 00000124699999999999999999999999999999999998764 379999999875
Q ss_pred Ch------hcccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000907 740 NQ------ETFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGV 810 (1230)
Q Consensus 740 ~~------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 810 (1230)
.. ..+++.++|++|++ .+++.+||.|++.+....+. .....+..++++++++.+||. +..++. +
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----~ 461 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRY-----P 461 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCC-----c
Confidence 32 12456799999997 58889999999987644321 112334456788999999996 455555 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |.|||++|||++ .+.+..|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dr 533 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHR 533 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 579999999999999999999999999999999999999999999999765 899999999987 45566777
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=484.58 Aligned_cols=187 Identities=22% Similarity=0.353 Sum_probs=154.0
Q ss_pred EeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh----hcccceEEEEccCC---ccCCC
Q 000907 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ----ETFTRISGYCEQND---IHSPY 760 (1230)
Q Consensus 688 iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~---~~~~~ 760 (1230)
+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.. ...++.+||++|++ .+++.
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p--~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 344 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPR--TSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence 69999999999999999999999999999999998765 37999999987532 12345799999995 57788
Q ss_pred CCHHHHHHHHHHhcCC---CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEE
Q 000907 761 VTVYESLLYSAWLRLS---SEVNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 836 (1230)
Q Consensus 761 ltv~e~l~~~~~~~~~---~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illl 836 (1230)
+||.||+.+....... ........++.++++++.+++. +..++.+ ..||||||||++||++|+.+|++|+|
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lllL 419 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLIL 419 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 9999999875321110 0112233345688999999995 5566654 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 837 DEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 837 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||+|||+.++..+.+.|++++++|+|||++||++. ++.+..|+
T Consensus 420 DEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~ 464 (501)
T PRK10762 420 DEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDR 464 (501)
T ss_pred cCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCE
Confidence 9999999999999999999999878999999999986 55666776
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-49 Score=481.85 Aligned_cols=202 Identities=20% Similarity=0.312 Sum_probs=160.8
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEEC-Cee-
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITIS-GYP- 738 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~-g~~- 738 (1230)
++++|+++.+... ..+++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++ |.+
T Consensus 280 l~~~~l~~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~g~~~ 349 (520)
T TIGR03269 280 IKVRNVSKRYISV--------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP--TSGEVNVRVGDEW 349 (520)
T ss_pred EEEeccEEEeccC--------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEEecCCcc
Confidence 6677777766310 01234699999999999999999999999999999999998764 37999996 532
Q ss_pred --cCh------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-----cccccc
Q 000907 739 --KNQ------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-----LRQALV 805 (1230)
Q Consensus 739 --~~~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-----~~~~~~ 805 (1230)
... ...++.++|++|++.+++.+||.||+.+...+. ...+..+++++++++.+++.+ ..++.
T Consensus 350 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~- 424 (520)
T TIGR03269 350 VDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY- 424 (520)
T ss_pred ccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC-
Confidence 111 123456899999998899999999998754321 122333456788999999975 33444
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 806 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 806 ~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+..||||||||++|||||+.+|++|||||||+|||+.+++.+.+.|++++++ |.|||++||++. .+.+..|+
T Consensus 425 ----~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~ 497 (520)
T TIGR03269 425 ----PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDR 497 (520)
T ss_pred ----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCE
Confidence 4579999999999999999999999999999999999999999999998764 899999999986 45566776
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-49 Score=482.63 Aligned_cols=187 Identities=26% Similarity=0.314 Sum_probs=154.5
Q ss_pred eeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh---h---cccceEEEEccCC--cc
Q 000907 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---E---TFTRISGYCEQND--IH 757 (1230)
Q Consensus 686 ~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~---~~~~~~~~v~q~~--~~ 757 (1230)
+.+|+|+|+++++||+++|+||||||||||+|+|+|..+ .+|+|.++|.++.. . .+++.++|++|++ .+
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l 375 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSL 375 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhc
Confidence 469999999999999999999999999999999999864 37999999987532 1 1346789999996 47
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEE
Q 000907 758 SPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 836 (1230)
Q Consensus 758 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illl 836 (1230)
++.+||.||+.+....+.. .....+.+++++++++.+++. +..++. +..|||||||||+||+||+.+|++|+|
T Consensus 376 ~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~llll 449 (529)
T PRK15134 376 NPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRY-----PAEFSGGQRQRIAIARALILKPSLIIL 449 (529)
T ss_pred CCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcC-----CccCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 8889999999886432211 122333456688999999997 355554 357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 837 DEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 837 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||+|||+.+++.+.+.|++++++ |+|||++||++. .+.+..|+
T Consensus 450 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~ 495 (529)
T PRK15134 450 DEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQ 495 (529)
T ss_pred eCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCe
Confidence 9999999999999999999999765 899999999986 45566676
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-49 Score=480.68 Aligned_cols=190 Identities=18% Similarity=0.318 Sum_probs=155.5
Q ss_pred eeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh----hcccceEEEEccCC---ccC
Q 000907 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ----ETFTRISGYCEQND---IHS 758 (1230)
Q Consensus 686 ~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~---~~~ 758 (1230)
+.+|+|+||++++||+++|+||||||||||||+|+|..++ +.+|+|.++|.++.. ...++.+||++|+. .++
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~ 351 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIV 351 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcC
Confidence 3589999999999999999999999999999999998753 137999999987632 22356789999995 578
Q ss_pred CCCCHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeE
Q 000907 759 PYVTVYESLLYSAWLRLS--SEVNSKTREMFVEEVMELVELNP-LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 835 (1230)
Q Consensus 759 ~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~ill 835 (1230)
+.+||+||+.+...-... ........++.++++++.+++.+ ..++.+ +.||||||||++||++|+.+|++|+
T Consensus 352 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~lll 426 (500)
T TIGR02633 352 PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI-----GRLSGGNQQKAVLAKMLLTNPRVLI 426 (500)
T ss_pred CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc-----ccCCHHHHHHHHHHHHHhhCCCEEE
Confidence 899999999875321110 01122334456889999999964 456554 4699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 836 MDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 836 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||+|||+.++..+++.|++++++|.|||++|||+. ++.+..|+
T Consensus 427 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~ 472 (500)
T TIGR02633 427 LDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDR 472 (500)
T ss_pred EcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCE
Confidence 99999999999999999999999888999999999986 55566776
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-49 Score=479.07 Aligned_cols=187 Identities=20% Similarity=0.249 Sum_probs=152.0
Q ss_pred EeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChh----cccceEEEEccCC---ccCCC
Q 000907 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQE----TFTRISGYCEQND---IHSPY 760 (1230)
Q Consensus 688 iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ 760 (1230)
+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.++... ..++.++|++|++ .+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 355 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA--RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD 355 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence 58999999999999999999999999999999998765 379999999875321 1245689999984 47888
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCC
Q 000907 761 VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 839 (1230)
Q Consensus 761 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEP 839 (1230)
+|+.|++......+..........++.++++++.+++. +..++.+ +.||||||||++||++|+.+|++||||||
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEP 430 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEP 430 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCC
Confidence 99999986421111110011222345678999999996 5666654 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 840 TSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 840 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|+|||+.+++.+.+.|++++++|.|||++||++. ++.+..|+
T Consensus 431 t~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~ 472 (510)
T PRK15439 431 TRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADR 472 (510)
T ss_pred CcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCE
Confidence 9999999999999999999878999999999986 56666777
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=474.83 Aligned_cols=187 Identities=21% Similarity=0.363 Sum_probs=153.5
Q ss_pred EeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh----hcccceEEEEccCC---ccCCC
Q 000907 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ----ETFTRISGYCEQND---IHSPY 760 (1230)
Q Consensus 688 iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~---~~~~~ 760 (1230)
+++|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|+++.. ...++.++|++|++ .+++.
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 345 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRR--TAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV 345 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcC--CCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCC
Confidence 89999999999999999999999999999999998764 47999999987532 12346789999986 48888
Q ss_pred CCHHHHHHHHHHhcC-CCC--CCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEE
Q 000907 761 VTVYESLLYSAWLRL-SSE--VNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 836 (1230)
Q Consensus 761 ltv~e~l~~~~~~~~-~~~--~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illl 836 (1230)
+|+.||+.+...... ... ......++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|++|||
T Consensus 346 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~lllL 420 (501)
T PRK11288 346 HSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKVILL 420 (501)
T ss_pred CCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCEEEE
Confidence 999999987532111 000 11223345678899999994 5666664 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 837 DEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 837 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||+|||+.++..+++.|++++++|.|||++|||+. ++.+..|+
T Consensus 421 DEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~ 465 (501)
T PRK11288 421 DEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADR 465 (501)
T ss_pred cCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCE
Confidence 9999999999999999999999888999999999986 45566676
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-48 Score=468.17 Aligned_cols=188 Identities=17% Similarity=0.285 Sum_probs=149.5
Q ss_pred eEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChh----cccceEEEEccCC---ccCC
Q 000907 687 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQE----TFTRISGYCEQND---IHSP 759 (1230)
Q Consensus 687 ~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~ 759 (1230)
.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++... ..++.++|++|+. .+++
T Consensus 262 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~ 339 (491)
T PRK10982 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREK--SAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYA 339 (491)
T ss_pred cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcC--CccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCccc
Confidence 489999999999999999999999999999999998765 479999999876421 2345689999985 3678
Q ss_pred CCCHHHHHHHHHH--h-cCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeE
Q 000907 760 YVTVYESLLYSAW--L-RLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 835 (1230)
Q Consensus 760 ~ltv~e~l~~~~~--~-~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~ill 835 (1230)
.+|+.+|..+... . ...........++.++++++.+++. +..++. +..||||||||++||++|+.+|+|||
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrv~la~al~~~p~ill 414 (491)
T PRK10982 340 YLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ-----IGSLSGGNQQKVIIGRWLLTQPEILM 414 (491)
T ss_pred CCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccc-----cccCCcHHHHHHHHHHHHhcCCCEEE
Confidence 8888877433210 0 1000012223345678899999985 344554 35799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 836 MDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 836 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||+|||+.++..+++.|+++.++|+|||++||++. ++.+..|+
T Consensus 415 LDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~ 460 (491)
T PRK10982 415 LDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDR 460 (491)
T ss_pred EcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCE
Confidence 99999999999999999999999888999999999986 45566676
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=457.33 Aligned_cols=202 Identities=19% Similarity=0.316 Sum_probs=155.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ ..+|+|.++|.+.
T Consensus 260 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~ 325 (490)
T PRK10938 260 RIVLNNGVVSYN-------------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRR 325 (490)
T ss_pred eEEEeceEEEEC-------------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccC
Confidence 378889988763 24699999999999999999999999999999999997542 1379999999764
Q ss_pred Ch----hcccceEEEEccCCccCC--CCCHHHHHHHHHHh--cCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCC
Q 000907 740 NQ----ETFTRISGYCEQNDIHSP--YVTVYESLLYSAWL--RLSSEVNSKTREMFVEEVMELVELNP-LRQALVGLPGV 810 (1230)
Q Consensus 740 ~~----~~~~~~~~~v~q~~~~~~--~ltv~e~l~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~ 810 (1230)
.. ...++.++|++|++.+++ ..++++++.+.... ....... ...++.++++++.+++.+ ..++.+
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~----- 399 (490)
T PRK10938 326 GSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPF----- 399 (490)
T ss_pred CCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCch-----
Confidence 21 123567999999876543 24677766543211 1111111 223456889999999986 666653
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCCHHHHH-HHhc
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTG-RTVVCTIHQPSIDIFE-AFDA 882 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~i~~-~fd~ 882 (1230)
..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++| .|||++||++. ++.+ ..|+
T Consensus 400 ~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~ 472 (490)
T PRK10938 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHR 472 (490)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhhee
Confidence 4799999999999999999999999999999999999999999999998765 47999999986 3333 2454
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=396.57 Aligned_cols=212 Identities=26% Similarity=0.323 Sum_probs=171.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
-++.+|++..++.+...-.. ..+...++++||+++++||.++|+|.||||||||-.+|.++.++ +|+|.++|.++
T Consensus 276 ll~~~~v~v~f~i~~g~~~r--~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~~i 350 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRR--TVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQDI 350 (534)
T ss_pred eEEecceEEEEecCCccccc--cchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCccc
Confidence 34555555555543221111 12345799999999999999999999999999999999998764 49999999986
Q ss_pred Ch------hcccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 740 NQ------ETFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 740 ~~------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
.. ...|+.+-.|+||+ .+.|.+||.|-+.-+.....+ ..+..++++++.+++++.||+...- -. .+.
T Consensus 351 ~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r--~R--YPh 425 (534)
T COG4172 351 DGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATR--NR--YPH 425 (534)
T ss_pred cccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHh--hc--CCc
Confidence 53 24567889999998 578999999999887666544 4678889999999999999986332 12 256
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++|||||||++||||++.+|++++||||||+||-.-+.+|+++||++.+ .|.+-++++||.. -+-.+.|+
T Consensus 426 EFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~ 496 (534)
T COG4172 426 EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHR 496 (534)
T ss_pred ccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhce
Confidence 8999999999999999999999999999999999999999999999964 5999999999986 44556665
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=434.10 Aligned_cols=186 Identities=22% Similarity=0.319 Sum_probs=150.8
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.+++.
T Consensus 324 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~~-- 386 (556)
T PRK11819 324 VIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQP--DSGTIKIGET-- 386 (556)
T ss_pred EEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCc--
Confidence 488999988762 34699999999999999999999999999999999998765 3799998542
Q ss_pred ChhcccceEEEEccCC-ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHH
Q 000907 740 NQETFTRISGYCEQND-IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGq 817 (1230)
..+||++|+. .+++.+||.|++.+...... .... ....+++++.+++.+ ..++.+ ..|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKV-----GVLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCch-----hhCCHHH
Confidence 1589999986 67888999999987642211 1111 123457899999964 345543 4799999
Q ss_pred HHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 818 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 818 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|+++ .| |||++||++. .+....|+
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~-tvi~vtHd~~-~~~~~~d~ 511 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF--PG-CAVVISHDRW-FLDRIATH 511 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CC-eEEEEECCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999886 24 8999999986 45555666
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=435.50 Aligned_cols=183 Identities=20% Similarity=0.266 Sum_probs=150.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP--DSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCc--
Confidence 588999998763 24699999999999999999999999999999999998765 3799999873
Q ss_pred ChhcccceEEEEccCCc--cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHH
Q 000907 740 NQETFTRISGYCEQNDI--HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgG 816 (1230)
+.+||++|+.. +.+.+|+.|++.+.. .. . ..++.++++++.+++. +..+..+ ..||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~---~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE---G--DDEQAVRGTLGRLLFSQDDIKKSV-----KVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cC---C--ccHHHHHHHHHHcCCChhHhcCcc-----cccCHH
Confidence 46899999864 556789999986421 11 1 1134578899999984 4555553 479999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++ +.|||++||++. .+....|+
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~ 504 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATR 504 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999876 459999999986 44455565
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=426.57 Aligned_cols=186 Identities=20% Similarity=0.307 Sum_probs=150.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|++|++||+++|+|||||||||||++|+|..++ .+|+|.+++.
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~~~-- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP--DSGTIKIGET-- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCeEEEECCc--
Confidence 488899988762 34699999999999999999999999999999999998764 3799998542
Q ss_pred ChhcccceEEEEccCC-ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHH
Q 000907 740 NQETFTRISGYCEQND-IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGq 817 (1230)
..+||++|+. .+++.+||.|++.+...... .... +..++++++.+++.+ ..+..+ ..|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKV-----GQLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCch-----hhCCHHH
Confidence 1589999986 47888999999987642211 1111 123567899999964 345543 4799999
Q ss_pred HHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 818 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 818 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. | |||++||++. .+....|+
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~ 509 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATH 509 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999872 3 8999999986 44455666
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-43 Score=427.07 Aligned_cols=183 Identities=22% Similarity=0.251 Sum_probs=153.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. + ..|+++|+++++||+++|+||||||||||+++|+|..++ .+|+|.++
T Consensus 340 ~l~~~~ls~~~~-------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p--~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLG-------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP--DEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEEC-------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEEe----
Confidence 478888887652 2 248999999999999999999999999999999998765 37999875
Q ss_pred ChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000907 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 819 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrq 819 (1230)
..++|++|+..+.+.+||+|++.+.... ... ...++++++.+++.+..++.+ ..|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKNV-----KDLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHH
Confidence 1489999998888899999999875211 111 124688999999987777654 479999999
Q ss_pred HHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 820 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 820 rl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++||+. .+....|+
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDr 523 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDR 523 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999764 899999999976 44455676
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-44 Score=357.31 Aligned_cols=191 Identities=26% Similarity=0.367 Sum_probs=168.9
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|++.++ +..++|+|||+++++||+++|+|||||||||||+||.++..+ .+|+|.++|.+..
T Consensus 3 i~i~~l~K~f-------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~--~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSF-------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP--DSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEe-------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCC--CCceEEECCEecc
Confidence 5666666554 567899999999999999999999999999999999998765 4799999997653
Q ss_pred ----hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000907 741 ----QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 741 ----~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 816 (1230)
....|+.+|+|+|+.++||++||.||+..+...- ...++++.++.+.++|+.+||.+.+|.+ +.+||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~y-----P~qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAY-----PAQLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhC-----ccccCcH
Confidence 2457889999999999999999999999874322 2456677778889999999999998876 4589999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
|||||+|||||+.+|+++|+|||||+|||+...++.+.+++++++|.|.|++||+-.
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~ 197 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG 197 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhH
Confidence 999999999999999999999999999999999999999999999999999999765
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=405.69 Aligned_cols=186 Identities=24% Similarity=0.317 Sum_probs=149.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|++|++||+++|+|||||||||||++|+|..++ .+|+|.+ |.+
T Consensus 319 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~-~~~- 381 (635)
T PRK11147 319 VFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA--DSGRIHC-GTK- 381 (635)
T ss_pred eEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEE-CCC-
Confidence 478899988763 35699999999999999999999999999999999998764 3799988 432
Q ss_pred ChhcccceEEEEccCC-ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCHHH
Q 000907 740 NQETFTRISGYCEQND-IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGq 817 (1230)
-.+||++|+. .+++.+||.|++.+..... .... ....+.++++.+++. +..++.+ +.|||||
T Consensus 382 ------~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 445 (635)
T PRK11147 382 ------LEVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVNG--RPRHVLGYLQDFLFHPKRAMTPV-----KALSGGE 445 (635)
T ss_pred ------cEEEEEeCcccccCCCCCHHHHHHhhcccc---cccc--hHHHHHHHHHhcCCCHHHHhChh-----hhCCHHH
Confidence 1589999975 5888999999998753210 0111 123467889999885 3455554 4699999
Q ss_pred HHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 818 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 818 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||+||++|+.+|++|||||||+|||+.+...+.+.|++. +.|||++|||.. .+-...|+
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~ 506 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTE 506 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCE
Confidence 99999999999999999999999999999999999999875 459999999975 34445555
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=403.73 Aligned_cols=182 Identities=20% Similarity=0.333 Sum_probs=146.6
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.+.++|+++.+. ++.+|+|+|++|++||++||+|||||||||||++|+|..++ .+|+|.+++.
T Consensus 312 ~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAP--VSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCC--
Confidence 488899988762 35699999999999999999999999999999999998765 3799998641
Q ss_pred ChhcccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHH
Q 000907 740 NQETFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgG 816 (1230)
..+||++|+. .+.+..|+.+++.. . . .....+.++++++.+++.. ..++.+ +.||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~--~----~~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---L--A----PQELEQKLRDYLGGFGFQGDKVTEET-----RRFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---h--C----chhhHHHHHHHHHHcCCChhHhcCch-----hhCCHH
Confidence 2589999974 34556677776531 1 1 1112345788999999963 455554 469999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++ .| |||++|||+. .+....|+
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~ 496 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDD 496 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999886 34 9999999975 45555666
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=351.33 Aligned_cols=197 Identities=25% Similarity=0.372 Sum_probs=172.6
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.+.++++++.+. ...+|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|.+.
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p--~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP--TSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCccc
Confidence 467778877663 36799999999999999999999999999999999998875 479999999987
Q ss_pred ChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000907 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 819 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrq 819 (1230)
. .....++||+|++.++|.+||.||+.++...+. ..++++.+++++.++.+||.+..|.+ +++|||||||
T Consensus 68 ~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQ 137 (248)
T COG1116 68 T--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQ 137 (248)
T ss_pred C--CCCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHH
Confidence 3 345678999999999999999999999876653 34566667899999999999998876 5689999999
Q ss_pred HHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHHHhc
Q 000907 820 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 820 rl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||+|||||+.+|+||+||||+++||+.|+..+.+.|.++. +.++||+++|||....+ .+-|+
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv-~LsdR 200 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAV-YLADR 200 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHH-hhhCE
Confidence 9999999999999999999999999999999999888875 55899999999988554 46777
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=349.75 Aligned_cols=201 Identities=27% Similarity=0.412 Sum_probs=168.3
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|++..+... .....+|++||++|++||+++|+|||||||||||++|.|...| .+|.|.++|.+..
T Consensus 2 i~~~~v~k~y~~~---------~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~ 70 (226)
T COG1136 2 IELKNVSKIYGLG---------GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLT 70 (226)
T ss_pred cEEeeeEEEeccC---------CcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcC
Confidence 3467777666421 1225799999999999999999999999999999999998775 4799999998754
Q ss_pred h-------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-ccccCCCCCC
Q 000907 741 Q-------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQ-ALVGLPGVNG 812 (1230)
Q Consensus 741 ~-------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~~~~~~ 812 (1230)
. ..+++.+|||+|+..+.|.+||.||+.++..+... ......+.++++++.+||.+..+ +. +.+
T Consensus 71 ~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~---~~~~~~~~~~~l~~~lgl~~~~~~~~-----p~e 142 (226)
T COG1136 71 KLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGK---SAGRRKRAAEELLEVLGLEDRLLKKK-----PSE 142 (226)
T ss_pred cCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCC---ChhHHHHHHHHHHHhcCChhhhccCC-----chh
Confidence 2 12456799999999999999999999987665432 22245667899999999986665 43 457
Q ss_pred CCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 813 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||||||+|||||+.+|+++|.||||.+||+.+++.|+++++++.++ |+|+|++||||. +-...|+
T Consensus 143 LSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~~~dr 211 (226)
T COG1136 143 LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAKYADR 211 (226)
T ss_pred cCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhCCE
Confidence 9999999999999999999999999999999999999999999999765 999999999985 5567777
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=350.04 Aligned_cols=202 Identities=27% Similarity=0.436 Sum_probs=171.7
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.|. ++ .+|+|||+++++||+++|+||||||||||+|+|.|..+| .+|+|.++|.+.
T Consensus 4 ~i~v~nl~v~y~------------~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p--~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYG------------NR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEEC------------CE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CcceEEEccccc
Confidence 588999999874 12 599999999999999999999999999999999998775 489999999886
Q ss_pred ChhcccceEEEEccCCc--cCCCCCHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 740 NQETFTRISGYCEQNDI--HSPYVTVYESLLYSAWLRLS--SEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
.....+..+|||||... .-..+||+|.+..+...+.. ...+ +.+.+.++++|+.+|+.+.+|+.+| .|||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSG 142 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIG-----ELSG 142 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCccc-----ccCc
Confidence 65444578999999542 22337999999886332221 1222 3336779999999999999999876 5999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhcC
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDAG 883 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~~ 883 (1230)
||+||+.|||||+.+|++|+|||||+|+|+.++..+.++|++++++|+||++++||++ .+.+.||+.
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~v 209 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRV 209 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEE
Confidence 9999999999999999999999999999999999999999999988999999999998 677889983
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=348.68 Aligned_cols=203 Identities=23% Similarity=0.319 Sum_probs=176.6
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
+++++++..+... ..+...+|+|||++|++||++||+|.||||||||++++.++..| .+|+|.+||.++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~P--tsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP--TSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCC--CCceEEEcCEecc
Confidence 5788888766421 12346799999999999999999999999999999999998775 4899999997753
Q ss_pred h------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000907 741 Q------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 814 (1230)
Q Consensus 741 ~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 814 (1230)
. ...|+.+|+++|+..++...||.||+.|...+.. .++++.+++|.++++.+||.+.++.+ +.+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~y-----P~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRY-----PAQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccC-----chhcC
Confidence 2 3567899999999999999999999999977653 56788899999999999999888876 45899
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||||+|||||+.+|+|||+|||||+|||.+.+.|+++|+++.++ |.||+++||+.. -+-+..|+
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~r 211 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDR 211 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhh
Confidence 99999999999999999999999999999999999999999998654 999999999875 45556677
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=324.59 Aligned_cols=191 Identities=27% Similarity=0.367 Sum_probs=169.5
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
+.|++|+..|+ +++.+|+||||.|++||++-|+||||||||||||+|.+...+ .+|+|.++|.++.
T Consensus 2 I~f~~V~k~Y~------------~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p--t~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYP------------GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP--TRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcC------------CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcC--CCceEEECCeecc
Confidence 57888887774 236799999999999999999999999999999999997664 4799999999864
Q ss_pred h------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000907 741 Q------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 814 (1230)
Q Consensus 741 ~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 814 (1230)
. ...||.+|+|+||..+.+..||.||+.|+.... .....+.+++|.++++..||.+..+.. +.+||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARAL-----PSQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcC-----ccccC
Confidence 2 246789999999999999999999999987654 345566778899999999999887765 45899
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
||||||++||||++.+|++|+.||||.+|||..+.+|++++.++.+.|.||++.|||..
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~ 198 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE 198 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHH
Confidence 99999999999999999999999999999999999999999999889999999999853
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=335.79 Aligned_cols=200 Identities=28% Similarity=0.391 Sum_probs=175.3
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++++++++ +++.|++|||++|++||+++||||||||||||||+|.|+.+|. +|+|.++|.++
T Consensus 8 ~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~--~GeI~i~G~~i 72 (263)
T COG1127 8 LIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD--KGEILIDGEDI 72 (263)
T ss_pred eEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC--CCeEEEcCcch
Confidence 57888888754 6788999999999999999999999999999999999988764 79999999875
Q ss_pred Ch------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCC
Q 000907 740 NQ------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL-RQALVGLPGVNG 812 (1230)
Q Consensus 740 ~~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~ 812 (1230)
.. ...++++|+++|+-.+|..+||+||+.|..+ .....+++..++.+..-++..||... .+.. +.+
T Consensus 73 ~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplr--e~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----PsE 145 (263)
T COG1127 73 PQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLR--EHTKLPESLIRELVLMKLELVGLRGAAADLY-----PSE 145 (263)
T ss_pred hccCHHHHHHHHhheeEEeeccccccccchhHhhheehH--hhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----chh
Confidence 32 2456789999999999999999999998743 33456777777888888999999876 5544 568
Q ss_pred CCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 813 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||+||+++||||+.||+|+|+||||+||||.++..+-++++++.+. |.|++++|||.. +++...|+
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Dr 215 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADR 215 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhce
Confidence 9999999999999999999999999999999999999999999999766 999999999987 57777787
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=336.52 Aligned_cols=198 Identities=25% Similarity=0.370 Sum_probs=175.1
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++|+|++..+ +++.+++|+|++|++||+++++|||||||||+||+|.++..+ .+|+|.+||.++.
T Consensus 2 I~~~nvsk~y-------------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep--t~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRY-------------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP--TSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhc-------------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC--CCceEEECCeecc
Confidence 5677777655 457899999999999999999999999999999999998875 4899999999865
Q ss_pred h---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCCCCCCCCH
Q 000907 741 Q---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP--LRQALVGLPGVNGLST 815 (1230)
Q Consensus 741 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~~~~~~~~~~~~~lSg 815 (1230)
. ..+|+.+|||-|.-.+||++||.||+.+-..+. ..+++..+++++++++.+||.+ ..+++ +++|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCc
Confidence 4 467899999999999999999999998876654 3567778889999999999975 55554 578999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||+|||.+||||+.+|+|||+|||+++|||.++.++++.++++.++ |+|||++|||-. |-+.+-|+
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadr 205 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADR 205 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhce
Confidence 9999999999999999999999999999999999999999998755 999999999976 56678888
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=365.46 Aligned_cols=198 Identities=32% Similarity=0.455 Sum_probs=174.8
Q ss_pred eEEeeeEEEEecCcccccccccCC-ceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDD-KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
++++|++..+ + ++.+|+||||++++||++|++||||||||||||+|+|...+ .+|+|.++|.+.
T Consensus 5 i~~~~l~k~~-------------~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~ 69 (293)
T COG1131 5 IEVRNLTKKY-------------GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDV 69 (293)
T ss_pred eeecceEEEe-------------CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeC
Confidence 5667777655 4 46899999999999999999999999999999999998875 489999999886
Q ss_pred Ch--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000907 740 NQ--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 740 ~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 817 (1230)
.. ...++.+||++|++.+++.+||+|+|.|.+.++.... ...+++++++++.++|.+..++. +++||+||
T Consensus 70 ~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~ 141 (293)
T COG1131 70 VKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKK-----VRTLSGGM 141 (293)
T ss_pred ccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHH
Confidence 54 4567889999999999999999999999998886432 44566799999999999855554 45799999
Q ss_pred HHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCCHHHHHHHhc
Q 000907 818 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTG-RTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 818 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||++||+||+++|++|||||||+||||.++..+++.|++++++| +||+++||+++ ++.+.+|+
T Consensus 142 kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~ 206 (293)
T COG1131 142 KQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDR 206 (293)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999887 89999999997 67777897
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=364.35 Aligned_cols=187 Identities=20% Similarity=0.379 Sum_probs=156.1
Q ss_pred EeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh----hcccceEEEEccC---CccCCC
Q 000907 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ----ETFTRISGYCEQN---DIHSPY 760 (1230)
Q Consensus 688 iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~---~~~~~~ 760 (1230)
.++|+||++++||+++|-|-=|||+|-|+++|.|..+. .+|+|.+||++... ...+..++|||.| +-+++.
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~--~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~ 351 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPA--SSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLD 351 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcC--CCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCC
Confidence 57899999999999999999999999999999996543 37999999998643 2345678999987 467889
Q ss_pred CCHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEe
Q 000907 761 VTVYESLLYSAWLRLSS--EVNSKTREMFVEEVMELVELNPLR-QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 837 (1230)
Q Consensus 761 ltv~e~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlD 837 (1230)
++|.+|+.++...+... -.+.....+.+++..+.+++.... +.. +..||||.+|||.|||.|..+|++|+||
T Consensus 352 ~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-----v~~LSGGNQQKVvlarwL~~~p~vLilD 426 (500)
T COG1129 352 MSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP-----IGTLSGGNQQKVVLARWLATDPKVLILD 426 (500)
T ss_pred CcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccch-----hhcCCchhhhhHHHHHHHhcCCCEEEEC
Confidence 99999998873222211 234445556788899999886332 233 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 838 EPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 838 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||.|.|.-++.+|.++|++++++|++||++|-+.. |+..+.|+
T Consensus 427 EPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DR 470 (500)
T COG1129 427 EPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDR 470 (500)
T ss_pred CCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCE
Confidence 999999999999999999999999999999999865 88889998
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=324.22 Aligned_cols=194 Identities=24% Similarity=0.335 Sum_probs=165.1
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC---CCCeEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRK---TRGYITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~---~~~~~~G~i~~~g 736 (1230)
.++++|+++.| +++++|+|||++|++++++|++|||||||||||+++.... +.-.++|+|.++|
T Consensus 7 ~~~~~~l~~yY-------------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g 73 (253)
T COG1117 7 AIEVRDLNLYY-------------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG 73 (253)
T ss_pred eeEecceeEEE-------------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC
Confidence 57788888876 4578999999999999999999999999999999998743 2235789999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL-RQALVGLPGV 810 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~ 810 (1230)
+++.. ...|+.+|+|+|.+..|| +|++||+.|+.++.... .++.++.|+..++...|.+- .|++-.. .
T Consensus 74 ~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~---~~~ldeiVe~sLk~AaLWdEVKDrL~~s--a 147 (253)
T COG1117 74 KNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIK---DKELDEIVESSLKKAALWDEVKDRLHKS--A 147 (253)
T ss_pred eeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccc---hHHHHHHHHHHHHHhHhHHHhHHHhhCC--c
Confidence 88633 457899999999999999 99999999998776432 25667888998988888643 3443222 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
.+|||||+|||||||||+.+|+|||||||||+|||.+...|-+++.+++ +.-|||++||.+.
T Consensus 148 ~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq 209 (253)
T COG1117 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ 209 (253)
T ss_pred cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH
Confidence 4799999999999999999999999999999999999999999999996 6799999999876
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=358.23 Aligned_cols=199 Identities=28% Similarity=0.400 Sum_probs=178.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|++.++ ++..+|+|+|+++++||+++|+||||||||||||+|+|+..+ .+|+|.++|.++
T Consensus 3 ~i~l~~v~K~y-------------g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~--~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSF-------------GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP--TSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEc-------------CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEC
Confidence 46778887765 232399999999999999999999999999999999998775 479999999998
Q ss_pred Ch-hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 740 NQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 740 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
+. ...+|.+++|+|+..++|+|||+||+.|+.+.+ ...+++.+++|+++.+.|++.+..|++ +++||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhH
Confidence 75 456789999999999999999999999997765 346677888999999999999999987 458999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||+|||||+++|+++|||||.|+||...+..+...|+++.++ |.|+|.+|||+. |...+.|+
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladr 203 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADR 203 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCE
Confidence 9999999999999999999999999999999999999998755 899999999986 67788888
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=360.30 Aligned_cols=200 Identities=26% Similarity=0.395 Sum_probs=177.9
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|++..+ ++..+|+|+|++|++||+++|+|||||||||||++|+|...+. +|+|.++|+++
T Consensus 5 ~l~i~~v~k~y-------------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~--~G~I~l~G~~i 69 (352)
T COG3842 5 ALEIRNVSKSF-------------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS--SGEILLDGEDI 69 (352)
T ss_pred eEEEEeeeeec-------------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEEC
Confidence 57788887665 4578999999999999999999999999999999999988764 79999999997
Q ss_pred Ch-hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 740 NQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 740 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
.. ...+|.+|+|+|+..+||+|||.||+.|+..++ ....+++.+++++++++.++|.+..+++ +.+||||||
T Consensus 70 ~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~-----p~qLSGGQq 142 (352)
T COG3842 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRK-----PHQLSGGQQ 142 (352)
T ss_pred CCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhC-----hhhhChHHH
Confidence 65 356789999999999999999999999997633 3345566778999999999999988876 458999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||+|||||+.+|++||||||.|+||..-+.++..-|+++.+ .|.|.|++|||.. |-+.+-|+
T Consensus 143 QRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDr 206 (352)
T COG3842 143 QRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDR 206 (352)
T ss_pred HHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccc
Confidence 999999999999999999999999999999999999999875 4999999999987 56688888
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=343.62 Aligned_cols=202 Identities=29% Similarity=0.419 Sum_probs=171.8
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++.+|+++.|. ++.+|+|+||++++||+++|+||||||||||||+|+|..++ .+|+|.++|+++
T Consensus 2 ~L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p--~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP--KSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCCch
Confidence 367888888773 56899999999999999999999999999999999998775 379999999986
Q ss_pred Ch---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSS-EVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
.. +.+.+.++||||.....+.+||+|.+.++..-.... ....++..+.+++.++.+++.+.+++.+ ..|||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSG 141 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSG 141 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccCh
Confidence 43 567789999999998888999999998874322111 1123344457899999999999999875 46999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||+.|||||+++|++|+||||||.||...+.++++++++++ ++|+|||+++||++.. ....|+
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A-~ryad~ 208 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLA-ARYADH 208 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HHhCCE
Confidence 99999999999999999999999999999999999999999998 4599999999999844 345565
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=340.03 Aligned_cols=191 Identities=29% Similarity=0.427 Sum_probs=171.5
Q ss_pred CCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCe---ecCh-hcccceEEEEccCCccC
Q 000907 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGY---PKNQ-ETFTRISGYCEQNDIHS 758 (1230)
Q Consensus 683 ~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~---~~~~-~~~~~~~~~v~q~~~~~ 758 (1230)
.+...+++|||++|+.||++|++|||||||||||++|+|+..+. .|.|.+||. +.+. ....|++|||+|+..+|
T Consensus 12 ~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~--~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF 89 (345)
T COG1118 12 FGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD--AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALF 89 (345)
T ss_pred cccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC--CceEEECCEeccchhccchhhcceeEEEechhhc
Confidence 45667999999999999999999999999999999999998764 799999999 5443 34467899999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeC
Q 000907 759 PYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 838 (1230)
Q Consensus 759 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDE 838 (1230)
++|||.||+.|+...+ ....++.+.+.+++++++.++|++..+.+ +.+|||||||||++||||+.+|++|||||
T Consensus 90 ~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDE 163 (345)
T COG1118 90 PHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDE 163 (345)
T ss_pred ccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecC
Confidence 9999999999998776 23345667788899999999999998876 56899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 839 PTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 839 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|+++||..-+.++.+.|+++.++ |.|++++|||+. +.++.+|+
T Consensus 164 Pf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladr 207 (345)
T COG1118 164 PFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADR 207 (345)
T ss_pred CchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcce
Confidence 99999999999999999998765 999999999987 88999998
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=372.26 Aligned_cols=201 Identities=22% Similarity=0.346 Sum_probs=172.2
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++++|+++.+. .+++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 927 ~~L~I~nLsK~y~-----------~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~P--tsG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFE-----------PSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEec-----------CCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCC--CceEEEECCEE
Confidence 3688999988773 1235799999999999999999999999999999999998765 47999999998
Q ss_pred cCh--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000907 739 KNQ--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 739 ~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 816 (1230)
+.. ...++.+|||+|++.+++.+||+||+.+.+.++. ...++.+++++++++.+||.+..++.+ +.||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGG 1065 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGG 1065 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHH
Confidence 642 2356789999999999999999999999876542 233344567899999999998877764 479999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||+||+||+.+|++|+|||||+|||+.+++.+++.|++++ +|+|||++||++. ++....|+
T Consensus 1066 qKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDr 1129 (2272)
T TIGR01257 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDR 1129 (2272)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999985 6999999999986 45556777
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=323.91 Aligned_cols=203 Identities=26% Similarity=0.323 Sum_probs=170.7
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|++..|+ +++++|+|||++|++||++||+|||||||||||++|.|..++ .+|+|.+||.++
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~--t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP--TSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCC--CcceEEecccch
Confidence 478888887764 467899999999999999999999999999999999997664 479999999764
Q ss_pred Ch------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000907 740 NQ------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS-----SEVNSKTREMFVEEVMELVELNPLRQALVGLP 808 (1230)
Q Consensus 740 ~~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-----~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 808 (1230)
.. ..+++.+||++|++.+.+.++|.+|+..+..-+.+ -....++.+..+-+.++.+|+.+.+-.+.+
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~-- 146 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS-- 146 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc--
Confidence 32 35678999999999999999999999876322211 012223445667889999999988877643
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.|||||+|||+|||||+.+|+|+|.|||+++|||.+++.|++.|+++.+ +|.|||++.||-.. .-+.+|+
T Consensus 147 ---~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~R 217 (258)
T COG3638 147 ---TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADR 217 (258)
T ss_pred ---cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhh
Confidence 6999999999999999999999999999999999999999999999874 59999999999764 3467887
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=380.21 Aligned_cols=185 Identities=18% Similarity=0.244 Sum_probs=143.8
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++ +++.+|+|+||+|++||+++|+|||||||||||++|+|..++ .+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p--~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP--SSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCceEEECCc--
Confidence 488999998763 123699999999999999999999999999999999998765 3799988652
Q ss_pred ChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHH
Q 000907 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGqr 818 (1230)
..+||++|+. .+.+++.++.........+ ... ++.++++++.+++.+ ..+.. +..||||||
T Consensus 572 ------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQK 633 (718)
T ss_pred ------eeEEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHH
Confidence 3689999975 3445666664332111111 111 245788999999974 44444 357999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||++||++|+.+|++|+|||||+|||+.+...+.+.|++. .| |||++||++. .+....|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~dr 693 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDE 693 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCE
Confidence 9999999999999999999999999999999998888764 34 9999999986 34455565
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=315.38 Aligned_cols=185 Identities=29% Similarity=0.366 Sum_probs=169.0
Q ss_pred eEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC--hhcccceEEEEccCCccCCCCCHH
Q 000907 687 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN--QETFTRISGYCEQNDIHSPYVTVY 764 (1230)
Q Consensus 687 ~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~--~~~~~~~~~~v~q~~~~~~~ltv~ 764 (1230)
++++||||+++.||++||+|||||||||+|++|++...|. +|.|.+||.+.. +...++.+|.++.+..++..||++
T Consensus 16 ~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~--~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~r 93 (245)
T COG4555 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD--SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTAR 93 (245)
T ss_pred hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC--CceEEEeecccccChHHHhhhcceecCCcChhhhhhHH
Confidence 4999999999999999999999999999999999988764 799999998753 346788999999888999999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCC
Q 000907 765 ESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844 (1230)
Q Consensus 765 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD 844 (1230)
|||.|.+.+. +....+.+++.+++.+.++|.++.|+++| ++|.|+||||+|||||++||++++|||||||||
T Consensus 94 Enl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLD 165 (245)
T COG4555 94 ENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLD 165 (245)
T ss_pred HHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCcc
Confidence 9999998876 34556677889999999999999999976 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 845 ARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 845 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
..+...+.+.++++.++|++||++||.-+ |+-.+.|+
T Consensus 166 i~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDr 202 (245)
T COG4555 166 IRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDR 202 (245)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhhe
Confidence 99999999999999888999999999865 77778898
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=345.11 Aligned_cols=199 Identities=27% Similarity=0.401 Sum_probs=172.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|||+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p--~~G~v~i~G~~~ 71 (306)
T PRK13537 7 PIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP--DAGSISLCGEPV 71 (306)
T ss_pred eEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEec
Confidence 588899988763 35799999999999999999999999999999999998765 479999999986
Q ss_pred Ch--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000907 740 NQ--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 740 ~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 817 (1230)
.. ...++.+||++|++.+++.+||+||+.+.+.++. ....+..++++++++.+++.+..++.+ ++|||||
T Consensus 72 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 143 (306)
T PRK13537 72 PSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKV-----GELSGGM 143 (306)
T ss_pred ccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHH
Confidence 43 2456789999999999999999999998765432 233344556789999999988877765 4799999
Q ss_pred HHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 818 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 818 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++. ++.+..|+
T Consensus 144 ~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~ 207 (306)
T PRK13537 144 KRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDR 207 (306)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999877999999999987 66677787
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=349.73 Aligned_cols=176 Identities=26% Similarity=0.359 Sum_probs=142.5
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++++|+++.++ +++.+++++|+.+.+|+.+||+||||+|||||||+|+|...+ .+|+|.+.-.
T Consensus 320 ~vl~~~~~~~~y~------------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~--~~G~v~~g~~- 384 (530)
T COG0488 320 LVLEFENVSKGYD------------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP--LSGTVKVGET- 384 (530)
T ss_pred eeEEEeccccccC------------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhccc--CCceEEeCCc-
Confidence 3588999988763 236799999999999999999999999999999999997654 3788876431
Q ss_pred cChhcccceEEEEccCC-ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCCHH
Q 000907 739 KNQETFTRISGYCEQND-IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR-QALVGLPGVNGLSTE 816 (1230)
Q Consensus 739 ~~~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~lSgG 816 (1230)
-.+||..|+. .+.+..|+.|++.-.. +... +..+...+..+++.... .+. ++.||||
T Consensus 385 -------v~igyf~Q~~~~l~~~~t~~d~l~~~~-----~~~~----e~~~r~~L~~f~F~~~~~~~~-----v~~LSGG 443 (530)
T COG0488 385 -------VKIGYFDQHRDELDPDKTVLEELSEGF-----PDGD----EQEVRAYLGRFGFTGEDQEKP-----VGVLSGG 443 (530)
T ss_pred -------eEEEEEEehhhhcCccCcHHHHHHhhC-----cccc----HHHHHHHHHHcCCChHHHhCc-----hhhcCHh
Confidence 2589999986 4457779999886421 1111 44578889999987533 333 4579999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
||.|+.+|+.++.+|.+|+|||||+.||..+...+-+.|.+. .-|||+||||..
T Consensus 444 Ek~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~ 497 (530)
T COG0488 444 EKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRY 497 (530)
T ss_pred HHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHH
Confidence 999999999999999999999999999999999999999765 459999999974
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=349.74 Aligned_cols=200 Identities=27% Similarity=0.374 Sum_probs=173.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++ +++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 3 ~l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i 68 (356)
T PRK11650 3 GLKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI--TSGEIWIGGRVV 68 (356)
T ss_pred EEEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 377888887762 235699999999999999999999999999999999998775 479999999986
Q ss_pred Ch-hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 740 NQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 740 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
.. ...++.+|||+|+..++|++||+||+.|+...+ ...+.+..++++++++.++|.+..++.. ++||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~ 140 (356)
T PRK11650 69 NELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQR 140 (356)
T ss_pred CCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHH
Confidence 43 223578999999999999999999999986532 2344555677899999999998877764 57999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||+|||||+.+|++|+|||||++||+.++..+.+.|+++.++ |.|+|++||++. ++.++.|+
T Consensus 141 QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~ 204 (356)
T PRK11650 141 QRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADR 204 (356)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999998765 999999999986 67788887
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=328.70 Aligned_cols=200 Identities=23% Similarity=0.319 Sum_probs=167.1
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+.. +.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP--TRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEehh
Confidence 578888887631 124699999999999999999999999999999999998765 4799999998753
Q ss_pred h------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000907 741 Q------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 814 (1230)
Q Consensus 741 ~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 814 (1230)
. ..+++.++|++|++.+++.+||.||+.+....+. ......+++++++++.+++.+..++.. ..||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALP-----MQLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 2 1245679999999999999999999988754321 223344566889999999987766653 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+..|+
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~ 207 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHR 207 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999998777999999999986 45555665
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=345.02 Aligned_cols=202 Identities=22% Similarity=0.302 Sum_probs=171.9
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+... .+.+.+|+||||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p--~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 6788998887410 1134799999999999999999999999999999999998775 4799999999864
Q ss_pred h------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000907 741 Q------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 814 (1230)
Q Consensus 741 ~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 814 (1230)
. ...++.+||++|+..+++..||+||+.+....+ ...+++.++++.++++.+||.+..|.. +++||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~-----~~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSY-----PSNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCC
Confidence 3 124678999999999999999999999875432 234455567789999999999887766 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||||+|||||+.+|++|+|||||++||+.++..+++.|+++.++ |.|||++||++. .+.+..|+
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~ 210 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDC 210 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999999765 999999999976 56677787
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=346.87 Aligned_cols=199 Identities=25% Similarity=0.373 Sum_probs=173.9
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 578899988762 35699999999999999999999999999999999998775 479999999986
Q ss_pred Ch-hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 740 NQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 740 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
.. ...++.+|||+|+..++|++||.||+.|+...+ ...+.+.+++++++++.+++.+..++. ++.||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~-----~~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRY-----VDQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHH
Confidence 53 233578999999999999999999999986543 234555667899999999999887766 357999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++.++.|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~ 206 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDT 206 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999998765 899999999987 67788888
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=347.34 Aligned_cols=199 Identities=26% Similarity=0.379 Sum_probs=173.8
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++++. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p--~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ--TAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 478889988763 35699999999999999999999999999999999998765 479999999886
Q ss_pred Ch-hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 740 NQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 740 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
.. ...+|.+|||+|+..++|++||+||+.|+...+ .....+.+++++++++.++|.+..++. +++||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~-----~~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKY-----PGQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCC-----hhhCCHHHH
Confidence 43 234578999999999999999999999986543 234455667899999999999888766 357999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||+|||||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++||++. ++..+.|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~ 204 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADR 204 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999998765 899999999997 67788887
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=346.38 Aligned_cols=199 Identities=24% Similarity=0.344 Sum_probs=173.2
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEE--EEEEECCe
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT--GNITISGY 737 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~--G~i~~~g~ 737 (1230)
.++++|+++++. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++. + |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~--~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA--GLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCCEEEEECCE
Confidence 578889988763 346999999999999999999999999999999999987753 6 99999998
Q ss_pred ecCh-hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000907 738 PKNQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 738 ~~~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 816 (1230)
+... ...++.+|||+|+..++|.+||+||+.|+...+ .....+.+++++++++.++|.+..++.. ++||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHH
Confidence 8643 224578999999999999999999999986543 2344555677899999999998888764 579999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCCHHHHHHHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~--g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||++. ++..+.|+
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dr 208 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADK 208 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999998765 799999999987 56777887
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=330.15 Aligned_cols=198 Identities=26% Similarity=0.364 Sum_probs=166.1
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~ 66 (235)
T cd03261 2 ELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP--DSGEVLIDGEDISG 66 (235)
T ss_pred eEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccc
Confidence 5677877662 34699999999999999999999999999999999998765 37999999987532
Q ss_pred ------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 742 ------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 742 ------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
..+++.++|++|++.+++.+||.||+.+...... .....+..++++++++.+++.+..++.+ +.|||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 139 (235)
T cd03261 67 LSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELSG 139 (235)
T ss_pred cChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 2345679999999999999999999988643221 1233444566888999999987766653 47999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 140 G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~ 206 (235)
T cd03261 140 GMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADR 206 (235)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCE
Confidence 9999999999999999999999999999999999999999998764 899999999987 45666776
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-37 Score=296.09 Aligned_cols=181 Identities=27% Similarity=0.340 Sum_probs=156.2
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh-hcccceEEEEccCCccCCCCCHHHHHHH
Q 000907 691 GVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-ETFTRISGYCEQNDIHSPYVTVYESLLY 769 (1230)
Q Consensus 691 ~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~ 769 (1230)
..++.|++||++||+||||||||||||+|+|...|. +|+|++||.+... ....|-+++++|+.++|.++||.+|+-+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~--~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC--CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 568899999999999999999999999999988764 8999999998654 3466789999999999999999999987
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHH
Q 000907 770 SAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 849 (1230)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~ 849 (1230)
+..-.+ +.+ .+.+++++.++...||.++.+++. .+||||||||+++||+|+++-+||+||||+|+|||.-+.
T Consensus 95 Gl~P~L--kL~-a~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLSPGL--KLN-AEQREKVEAAAAQVGLAGFLKRLP-----GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCCccc--ccC-HHHHHHHHHHHHHhChhhHhhhCc-----cccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 643211 222 344567899999999999988874 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 850 VVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 850 ~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++..++.++++ ++.|++++||+|+ +.-..-|+
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~ 199 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADR 199 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhc
Confidence 99999999975 4899999999998 45555555
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=307.02 Aligned_cols=197 Identities=25% Similarity=0.340 Sum_probs=171.1
Q ss_pred cccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChh----cccceEEEEcc
Q 000907 678 RRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQE----TFTRISGYCEQ 753 (1230)
Q Consensus 678 ~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q 753 (1230)
++.+++++++++++||+++++||+++++|||||||||.+.++.|...++ +|.|.+||.+++.. ..+..+||+||
T Consensus 9 ~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d--~G~i~ld~~diT~lPm~~RArlGigYLpQ 86 (243)
T COG1137 9 NLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD--SGKILLDDEDITKLPMHKRARLGIGYLPQ 86 (243)
T ss_pred hhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC--CceEEECCcccccCChHHHhhcCcccccc
Confidence 3344567789999999999999999999999999999999999987764 79999999987542 23456899999
Q ss_pred CCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000907 754 NDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSI 833 (1230)
Q Consensus 754 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~i 833 (1230)
++..|-.+||+||+......+.. +....+++.+++++++.+++.|+++... ..||||||||+.|||||+.+|+.
T Consensus 87 E~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~f 160 (243)
T COG1137 87 EASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPKF 160 (243)
T ss_pred cchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCCE
Confidence 99999999999999887666532 2233456667889999999999998763 36999999999999999999999
Q ss_pred eEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhcC
Q 000907 834 IFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDAG 883 (1230)
Q Consensus 834 lllDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~~ 883 (1230)
++||||++|+||.+...|.++++.+++.|.-|++|-|.-+ |..+..|++
T Consensus 161 iLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRa 209 (243)
T COG1137 161 ILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRA 209 (243)
T ss_pred EEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheE
Confidence 9999999999999999999999999999999999999987 667888884
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=323.39 Aligned_cols=197 Identities=28% Similarity=0.388 Sum_probs=164.3
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~ 66 (213)
T cd03259 2 ELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP--DSGEILIDGRDVTG 66 (213)
T ss_pred eeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcCc
Confidence 5677777652 35699999999999999999999999999999999998765 47999999987643
Q ss_pred -hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000907 742 -ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 820 (1230)
Q Consensus 742 -~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr 820 (1230)
...++.++|++|++.+++.+|++||+.+..... ........+.++++++.+++.+..++.+ ..||||||||
T Consensus 67 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qr 138 (213)
T cd03259 67 VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQR 138 (213)
T ss_pred CchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHH
Confidence 223567999999999999999999998864332 1233344556788999999987766653 4699999999
Q ss_pred HHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 821 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 821 l~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|++. ++.+..|+
T Consensus 139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~ 200 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADR 200 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCE
Confidence 9999999999999999999999999999999999999876 4899999999986 45556666
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=324.25 Aligned_cols=201 Identities=29% Similarity=0.409 Sum_probs=164.9
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+... .+.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~~---------~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 69 (218)
T cd03255 1 IELKNLSKTYGGG---------GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP--TSGEVRVDGTDIS 69 (218)
T ss_pred CeEeeeEEEecCC---------CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC--CceeEEECCEehh
Confidence 3567888776310 0115699999999999999999999999999999999998765 4799999998754
Q ss_pred hh-------cccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000907 741 QE-------TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGL 813 (1230)
Q Consensus 741 ~~-------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l 813 (1230)
.. ..++.++|++|++.+++.+||+||+.+....+. ......++.++++++.+|+.+..++.+ +.|
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 141 (218)
T cd03255 70 KLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SEL 141 (218)
T ss_pred hcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhc
Confidence 21 124579999999999999999999998754431 223334556889999999987766653 479
Q ss_pred CHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 814 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 814 SgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|++.. + +..|+
T Consensus 142 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~ 209 (218)
T cd03255 142 SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-A-EYADR 209 (218)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-H-hhhcE
Confidence 99999999999999999999999999999999999999999999876 58999999999863 3 36665
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=343.79 Aligned_cols=199 Identities=23% Similarity=0.334 Sum_probs=173.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP--DSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 488999988763 34699999999999999999999999999999999998775 479999999986
Q ss_pred Ch-hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 740 NQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 740 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
.. ...++.+|||+|+..++|.+||.||+.|+...+ .....+.+++++++++.++|.+..++.. .+||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 43 234578999999999999999999999975433 2344455667899999999998887764 57999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||+|||||+.+|++|||||||+|||..++..+.+.|+++.++ |.|+|++||++. ++..+.|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDr 214 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDR 214 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999998765 999999999986 67788887
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=339.95 Aligned_cols=199 Identities=26% Similarity=0.386 Sum_probs=171.7
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 41 ~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p--~~G~i~i~G~~~ 105 (340)
T PRK13536 41 AIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP--DAGKITVLGVPV 105 (340)
T ss_pred eEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CceEEEECCEEC
Confidence 588999988763 35799999999999999999999999999999999998775 379999999986
Q ss_pred Ch--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000907 740 NQ--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 740 ~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 817 (1230)
.. ...++.+||++|+..+++.+||.||+.+.+.... ....+..++++++++.++|.+..++.+ ++|||||
T Consensus 106 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G~ 177 (340)
T PRK13536 106 PARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGGM 177 (340)
T ss_pred CcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHHH
Confidence 42 2456789999999999999999999987654432 223334456788999999998877775 4699999
Q ss_pred HHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 818 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 818 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||++||+||+++|++|+|||||+|||+.++..+++.|++++++|+|||++||+.+ ++.+..|+
T Consensus 178 kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~ 241 (340)
T PRK13536 178 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDR 241 (340)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999878999999999986 66677787
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=322.45 Aligned_cols=199 Identities=26% Similarity=0.384 Sum_probs=164.7
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+... .+.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~- 69 (220)
T cd03293 2 EVRNVSKTYGGG---------GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP--TSGEVLVDGEPVT- 69 (220)
T ss_pred eEEEEEEEcCCC---------CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECc-
Confidence 567777766310 0115799999999999999999999999999999999998764 4799999998764
Q ss_pred hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH
Q 000907 742 ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRL 821 (1230)
Q Consensus 742 ~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl 821 (1230)
..++.++|++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..++.+ +.||||||||+
T Consensus 70 -~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl 140 (220)
T cd03293 70 -GPGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRV 140 (220)
T ss_pred -cccCcEEEEecccccccCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHH
Confidence 245679999999999999999999988654331 233344566889999999987666653 47999999999
Q ss_pred HHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 822 TIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 822 ~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .|+|||+++|++. ++.+..|+
T Consensus 141 ~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~ 201 (220)
T cd03293 141 ALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADR 201 (220)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999864 4899999999986 45556666
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=342.07 Aligned_cols=202 Identities=27% Similarity=0.397 Sum_probs=171.6
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 2 ~L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i 66 (353)
T PRK10851 2 SIEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ--TSGHIRFHGTDV 66 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEC
Confidence 367888887662 35699999999999999999999999999999999998765 379999999986
Q ss_pred Ch-hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000907 740 NQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS-SEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 740 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 817 (1230)
.. ...++.++||+|+..++|.+||.||+.|....+.. .....++..++++++++.++|.+..++.. ..|||||
T Consensus 67 ~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq 141 (353)
T PRK10851 67 SRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQ 141 (353)
T ss_pred CCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHH
Confidence 43 22346799999999999999999999987543211 12344555677899999999988777663 5799999
Q ss_pred HHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 818 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 818 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++..+.|+
T Consensus 142 ~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dr 206 (353)
T PRK10851 142 KQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADR 206 (353)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999998765 899999999986 66777887
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=320.54 Aligned_cols=196 Identities=23% Similarity=0.392 Sum_probs=165.2
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (210)
T cd03269 2 EVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP--DSGEVLFDGKPLDI 66 (210)
T ss_pred EEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCCchhH
Confidence 5677777652 34699999999999999999999999999999999998764 47999999987643
Q ss_pred hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH
Q 000907 742 ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRL 821 (1230)
Q Consensus 742 ~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl 821 (1230)
..++.++|++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..++.+ ++||||||||+
T Consensus 67 -~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 137 (210)
T cd03269 67 -AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKV 137 (210)
T ss_pred -HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHH
Confidence 345679999999999999999999988654432 223344566889999999987666553 47999999999
Q ss_pred HHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 822 TIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 822 ~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 138 ~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~ 197 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDR 197 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhE
Confidence 9999999999999999999999999999999999998777899999999986 45555665
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=308.01 Aligned_cols=201 Identities=26% Similarity=0.319 Sum_probs=165.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++.+|++..+... .....+|+|||+++.+||++||+|+||||||||.++|+|...+ .+|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~---------~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p--~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGG---------KFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP--SSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCC---------cchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCceEEECCccc
Confidence 47888998877531 1112599999999999999999999999999999999998775 479999999875
Q ss_pred Chh----cccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCC
Q 000907 740 NQE----TFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR-QALVGLPGVNG 812 (1230)
Q Consensus 740 ~~~----~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~ 812 (1230)
... .+.+.+.+|+||+ .+.|..||++.|.-+... ....+. .+++.++++.+||.+.. +++ +.+
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~--~~~i~~~L~~VgL~~~~l~R~-----P~e 141 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKS--QQRIAELLDQVGLPPSFLDRR-----PHE 141 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHH--HHHHHHHHHHcCCCHHHHhcC-----chh
Confidence 432 4678899999998 578999999998766443 122332 33389999999997543 332 568
Q ss_pred CCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 813 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||||++|||||+.+|++|+||||||+||+..+.+|+++|.++.++ |.|.|+++||.+ -+..+.|+
T Consensus 142 LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdR 211 (252)
T COG1124 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDR 211 (252)
T ss_pred cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhh
Confidence 9999999999999999999999999999999999999999999999754 889999999987 45667787
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=341.60 Aligned_cols=199 Identities=24% Similarity=0.349 Sum_probs=172.7
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 19 ~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 488999988762 34699999999999999999999999999999999998775 379999999886
Q ss_pred Ch-hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 740 NQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 740 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
.. ...++.+|||+|+..++|++||.||+.|+...+ .....+..++++++++.+++.+..++. +++||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~-----~~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRK-----PHQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHH
Confidence 43 234678999999999999999999999976533 234455567789999999999887765 357999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||+|||||+.+|++|||||||+|||..++..+.+.|+++.+ .|.|+|++|||+. ++..+-|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDr 219 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGR 219 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999998865 4899999999987 67788887
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=321.15 Aligned_cols=199 Identities=26% Similarity=0.353 Sum_probs=166.1
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP--SRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 56788887662 124699999999999999999999999999999999998764 4799999998764
Q ss_pred h------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000907 741 Q------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 814 (1230)
Q Consensus 741 ~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 814 (1230)
. ..+++.++|++|++.+++.+|+.||+.+....+ .......+++++++++.+++.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFP-----EQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 2 124567999999999999999999998875432 1233344566889999999987666553 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+..|+
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~ 206 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHR 206 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCE
Confidence 99999999999999999999999999999999999999999998777999999999986 55555675
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=322.04 Aligned_cols=208 Identities=36% Similarity=0.582 Sum_probs=171.0
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC-CeEEEEEEECCeec
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR-GYITGNITISGYPK 739 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~ 739 (1230)
+.|+|+++.++.. ...+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNW---------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecC---------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 5688888877421 0136799999999999999999999999999999999998651 12479999999887
Q ss_pred ChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEE-VMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
.....++.++|++|++.+++.+||+||+.+......+.........+.+++ .++.+++.+..++. ++.||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHH
Confidence 654567789999999999999999999998754432221122222334555 88888888766654 357999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|+|+++|++..++.+.+|+
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~ 213 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDR 213 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCE
Confidence 9999999999999999999999999999999999999998777999999999997788888887
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=321.38 Aligned_cols=198 Identities=28% Similarity=0.370 Sum_probs=165.8
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 65 (220)
T cd03265 1 IEVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP--TSGRATVAGHDVV 65 (220)
T ss_pred CEEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecC
Confidence 35677777652 35699999999999999999999999999999999998765 4799999998753
Q ss_pred h--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 741 Q--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 741 ~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
. ...++.++|++|++.+++.+||+||+.+....+. ....+.++.++++++.+++.+..++.+ ..||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 137 (220)
T cd03265 66 REPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMR 137 (220)
T ss_pred cChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHH
Confidence 2 2345679999999999999999999988654431 223334556889999999987766654 47999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||++||+||+.+|++++|||||+|||+.+++.+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 138 qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~ 201 (220)
T cd03265 138 RRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDR 201 (220)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999998776 899999999987 45556676
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=320.72 Aligned_cols=198 Identities=25% Similarity=0.358 Sum_probs=164.8
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~ 67 (214)
T cd03292 2 EFINVTKTYP------------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP--TSGTIRVNGQDVSD 67 (214)
T ss_pred EEEEEEEEeC------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEccc
Confidence 5677777652 124699999999999999999999999999999999998764 47999999987532
Q ss_pred ------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 742 ------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 742 ------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
...++.++|++|++.+++.+|++||+.+....+. ...++.+++++++++.+++.+..++.. ++|||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 139 (214)
T cd03292 68 LRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELSG 139 (214)
T ss_pred CCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCH
Confidence 1245679999999999999999999988754321 233444556889999999987766653 47999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+..|+
T Consensus 140 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~ 205 (214)
T cd03292 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHR 205 (214)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999998777999999999985 44445565
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=338.29 Aligned_cols=188 Identities=28% Similarity=0.383 Sum_probs=162.9
Q ss_pred CceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh--hcccceEEEEccCCccCCCC
Q 000907 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ--ETFTRISGYCEQNDIHSPYV 761 (1230)
Q Consensus 684 ~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~l 761 (1230)
+++.+|+|+||++++||++||+||||||||||+|+|+|..++ .+|+|.++|.+... ...++.+||++|++.+++.+
T Consensus 4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP--TSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 346799999999999999999999999999999999998765 47999999987642 23456799999999999999
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCC
Q 000907 762 TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 841 (1230)
Q Consensus 762 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPts 841 (1230)
||+||+.+.+.++. ....+.+++++++++.+++.+..++.+ +.||||||||++||+||+.+|++|+|||||+
T Consensus 82 tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 82 TGRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99999998765432 233444566889999999988777764 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 842 GLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 842 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||+.++..+++.|++++++|+|||++||++. ++.+..|+
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~ 193 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDR 193 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCE
Confidence 99999999999999999877999999999986 66667777
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=319.43 Aligned_cols=197 Identities=26% Similarity=0.388 Sum_probs=164.6
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~v~~~g~~~~~ 66 (213)
T cd03301 2 ELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP--TSGRIYIGGRDVTD 66 (213)
T ss_pred EEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCc
Confidence 5677877653 34699999999999999999999999999999999998765 47999999987643
Q ss_pred h-cccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000907 742 E-TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 820 (1230)
Q Consensus 742 ~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr 820 (1230)
. ..++.++|++|++.+++..|++||+.+....+ ....++.+++++++++.+++.+..+..+ +.||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 138 (213)
T cd03301 67 LPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQR 138 (213)
T ss_pred CCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHH
Confidence 1 23467999999999988999999998864432 1233444566888999999987766654 4799999999
Q ss_pred HHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 821 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 821 l~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+..|+
T Consensus 139 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~ 200 (213)
T cd03301 139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADR 200 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCe
Confidence 99999999999999999999999999999999999998764 899999999986 45555665
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=342.32 Aligned_cols=199 Identities=26% Similarity=0.369 Sum_probs=170.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p--~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI--TSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 377888887762 35699999999999999999999999999999999998765 379999999886
Q ss_pred Ch-hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 740 NQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 740 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
.. ...++.+||++|+..+++.+||+||+.|....+ .....+.+++++++++.++|.+..++.. .+||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 43 223467999999999999999999999875433 1234445567899999999988777664 47999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||++. ++....|+
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~ 203 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADK 203 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999998764 899999999986 66777787
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=334.54 Aligned_cols=199 Identities=27% Similarity=0.380 Sum_probs=168.8
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||++||+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP--DRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 478888888762 35699999999999999999999999999999999998765 379999999875
Q ss_pred Ch--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000907 740 NQ--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 740 ~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 817 (1230)
.. ...++.+||++|++.+++.+||+||+.+.+... .....+..++++++++.+++.+..++.+ +.|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHH
Confidence 32 234678999999999999999999998754432 1233334456788999999988777664 4699999
Q ss_pred HHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 818 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 818 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+..|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~ 204 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDR 204 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999878999999999987 56667777
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=320.55 Aligned_cols=202 Identities=27% Similarity=0.395 Sum_probs=167.9
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+... .....+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP--DAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEEcc
Confidence 5678888876310 0112699999999999999999999999999999999998765 3799999998764
Q ss_pred h--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 741 Q--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 741 ~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
. ..+++.++|++|++.+++.+||.||+.+....+ .....+..+.++++++.+++.+..++.+ +.||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHH
Confidence 2 234678999999999999999999998765432 1233444567889999999987776653 47999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+..|+
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~ 205 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDR 205 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCE
Confidence 9999999999999999999999999999999999999998777999999999986 55566676
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=338.64 Aligned_cols=189 Identities=23% Similarity=0.267 Sum_probs=164.3
Q ss_pred CCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh---hcc----cceEEEEccCC
Q 000907 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETF----TRISGYCEQND 755 (1230)
Q Consensus 683 ~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~----~~~~~~v~q~~ 755 (1230)
++.+.+|+|+||+|++||+++|+|||||||||||++|+|..++ .+|+|.++|.++.. ... ++.++||+|+.
T Consensus 3 ~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p--~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 3 TGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP--TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred cCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC--CceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 3556799999999999999999999999999999999998775 48999999998653 222 57899999999
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeE
Q 000907 756 IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 835 (1230)
Q Consensus 756 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~ill 835 (1230)
.++|.+||+||+.|..... ....++..+++.++++.+||.+..++.. ..|||||||||+|||||+.+|++||
T Consensus 81 ~l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLL 152 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILL 152 (363)
T ss_pred cCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999876543 2345556678899999999988777664 4799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 836 MDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 836 lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||+|||+.++..+.+.++++.++ |+|||++||+.. ++....|+
T Consensus 153 lDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~dr 199 (363)
T TIGR01186 153 MDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDR 199 (363)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999998754 899999999987 45667787
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=291.78 Aligned_cols=182 Identities=27% Similarity=0.409 Sum_probs=163.0
Q ss_pred eeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChhcccceEEEEccCCccCCCCCHHH
Q 000907 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYE 765 (1230)
Q Consensus 686 ~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e 765 (1230)
+.+|+|+|++|.+||.++++||||||||||||+++|..+| ..|+|.+||.++.... ..-|.|+|++.++|.+|+.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P--~~G~i~l~~r~i~gPg--aergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP--SRGSIQLNGRRIEGPG--AERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc--ccceEEECCEeccCCC--ccceeEeccCccchhhHHHH
Confidence 4599999999999999999999999999999999998876 4799999999875432 23489999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCH
Q 000907 766 SLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 845 (1230)
Q Consensus 766 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~ 845 (1230)
|+.|+..++ ...+.++.+++.+++...||.+..++.+ -+||||||||+.|||||+.+|++|+||||.++||.
T Consensus 94 NvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 999998887 4677888899999999999999887764 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHH
Q 000907 846 RAAAVVMRTVRNTV-DTGRTVVCTIHQPSIDIFEA 879 (1230)
Q Consensus 846 ~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~i~~~ 879 (1230)
-++++++++|-++. +.|+.++++||+....+|-.
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ieEAlfla 200 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIEEALFLA 200 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhh
Confidence 99999999998875 56999999999987666643
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=323.55 Aligned_cols=200 Identities=28% Similarity=0.363 Sum_probs=165.0
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 66 (236)
T cd03219 2 EVRGLTKRFG-------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP--TSGSVLFDGEDITG 66 (236)
T ss_pred eeeeeEEEEC-------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEECCC
Confidence 4677777652 34699999999999999999999999999999999998764 47999999987643
Q ss_pred h---c-ccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCC-------CCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000907 742 E---T-FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSE-------VNSKTREMFVEEVMELVELNPLRQALVGLPGV 810 (1230)
Q Consensus 742 ~---~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~-------~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 810 (1230)
. . .++.++|++|++.+++.+||+||+.+....+.... .......+.++++++.+++.+..++.+
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (236)
T cd03219 67 LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA----- 141 (236)
T ss_pred CCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----
Confidence 1 1 23568999999999999999999988654321110 012334556889999999987666653
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+..|+
T Consensus 142 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~ 212 (236)
T cd03219 142 GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADR 212 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCE
Confidence 479999999999999999999999999999999999999999999998777999999999987 55566776
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=337.99 Aligned_cols=202 Identities=23% Similarity=0.301 Sum_probs=169.7
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++++... .+++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p--~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP--TSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 5788998877310 1135799999999999999999999999999999999998765 4799999998864
Q ss_pred h---h---cccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000907 741 Q---E---TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 814 (1230)
Q Consensus 741 ~---~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 814 (1230)
. . ..++.+||++|++.+++.+||+||+.+....+ .....+..++++++++.+|+.+..++.+ +.||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYP-----AQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 2 1 23567999999999999999999999875433 1233444567889999999988777653 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+..|+
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~ 210 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDR 210 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999998764 899999999986 56667787
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=321.93 Aligned_cols=202 Identities=27% Similarity=0.385 Sum_probs=166.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 66 (239)
T cd03296 2 SIEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP--DSGTILFGGEDA 66 (239)
T ss_pred EEEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 367888888763 24699999999999999999999999999999999998764 479999999876
Q ss_pred Chh-cccceEEEEccCCccCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000907 740 NQE-TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS-SEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 740 ~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 817 (1230)
... ..++.++|++|++.+++.+||.||+.+....+.. .........+.++++++.+++.+..++.+ ..|||||
T Consensus 67 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 141 (239)
T cd03296 67 TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQ 141 (239)
T ss_pred CcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHH
Confidence 431 2346799999999999999999999886543211 00122333456788999999987666653 4799999
Q ss_pred HHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 818 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 818 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||++||+||+.+|++|+|||||+|||+.+++.+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 142 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~ 206 (239)
T cd03296 142 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADR 206 (239)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999998765 899999999986 45566776
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=318.20 Aligned_cols=182 Identities=29% Similarity=0.378 Sum_probs=153.7
Q ss_pred eeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChhcccceEEEEccCCc-cCCCCCHH
Q 000907 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDI-HSPYVTVY 764 (1230)
Q Consensus 686 ~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~-~~~~ltv~ 764 (1230)
+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+......++.++|++|++. .+..+|++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE--SSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 4699999999999999999999999999999999998765 47999999988654445667999999974 34467999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCC
Q 000907 765 ESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844 (1230)
Q Consensus 765 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD 844 (1230)
||+.+..... . . ..++++++++.+++.+..++.+ +.||||||||++|||||+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~---~-~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKEL---D-A---GNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhc---C-c---cHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 9998754321 1 1 1245788999999988777654 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 845 ARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 845 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+.++..+.+.|++++++|+|+|++||++. ++.+..|+
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~ 195 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDR 195 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999998777999999999986 34455665
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=322.07 Aligned_cols=197 Identities=27% Similarity=0.380 Sum_probs=164.7
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~ 66 (232)
T cd03218 2 RAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP--DSGKILLDGQDITK 66 (232)
T ss_pred eEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEeccc
Confidence 5677777652 35699999999999999999999999999999999998765 47999999987532
Q ss_pred ---hc-ccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000907 742 ---ET-FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 742 ---~~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 817 (1230)
.. .++.++|++|++.+++.+||+||+.+....+. .......+.++++++.+++.+..++.+ +.|||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 138 (232)
T cd03218 67 LPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGGE 138 (232)
T ss_pred CCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHH
Confidence 11 23568999999999999999999987643321 223334456788999999987766653 4799999
Q ss_pred HHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 818 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 818 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 139 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~ 202 (232)
T cd03218 139 RRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDR 202 (232)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999998877999999999987 56666776
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=329.74 Aligned_cols=194 Identities=24% Similarity=0.281 Sum_probs=162.6
Q ss_pred cccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh---hc----ccceEEE
Q 000907 678 RRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ET----FTRISGY 750 (1230)
Q Consensus 678 ~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~----~~~~~~~ 750 (1230)
+..+.++++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... .. .++.++|
T Consensus 29 ~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p--~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~ 106 (269)
T cd03294 29 EILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP--TSGKVLIDGQDIAAMSRKELRELRRKKISM 106 (269)
T ss_pred hhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccChhhhhhhhcCcEEE
Confidence 444456677899999999999999999999999999999999998765 37999999987542 11 2357999
Q ss_pred EccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000907 751 CEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVAN 830 (1230)
Q Consensus 751 v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~ 830 (1230)
++|++.+++.+||.||+.+..... ........++++++++.+++.+..++.+ +.||||||||++||+||+.+
T Consensus 107 v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~ 178 (269)
T cd03294 107 VFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVD 178 (269)
T ss_pred EecCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999998865432 1223344556888999999987777664 47999999999999999999
Q ss_pred CCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 831 PSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 831 p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+..|+
T Consensus 179 p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~ 230 (269)
T cd03294 179 PDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDR 230 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 9999999999999999999999999998754 899999999986 45566676
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=316.79 Aligned_cols=200 Identities=25% Similarity=0.341 Sum_probs=172.1
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
-+.+++++|+++. +..+|+|+|+++++||.++|+|+||||||||+++|+|..++ .+|.|.++|.+.
T Consensus 3 ~i~~~~l~~~y~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p--~~G~v~~~g~~~ 68 (235)
T COG1122 3 MIEAENLSFRYPG------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVLVDGLDT 68 (235)
T ss_pred eEEEEEEEEEcCC------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC--CCCEEEECCeec
Confidence 3678999998741 25799999999999999999999999999999999998875 369999999985
Q ss_pred C----hhcccceEEEEccCCc-cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000907 740 N----QETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 814 (1230)
Q Consensus 740 ~----~~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 814 (1230)
. ....++.+|||+|++. .+..-||.|.+.|+.... ..+.++.+++++++++.+++.+.+++. +..||
T Consensus 69 ~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LS 140 (235)
T COG1122 69 SSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRP-----PFNLS 140 (235)
T ss_pred cchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCC-----ccccC
Confidence 4 3567889999999974 345569999999986432 345566788999999999999987765 45799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||||+||.+|+.+|++|+|||||||||+..+..+++.++++.++ |+|+|++|||.. .+.+..|+
T Consensus 141 GGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~ 208 (235)
T COG1122 141 GGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADR 208 (235)
T ss_pred CcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCE
Confidence 99999999999999999999999999999999999999999999877 799999999875 45555666
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=317.43 Aligned_cols=198 Identities=25% Similarity=0.339 Sum_probs=164.7
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+. ++.+|+++|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (213)
T cd03262 2 EIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP--DSGTIIIDGLKLTD 66 (213)
T ss_pred EEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCc
Confidence 5677777653 24699999999999999999999999999999999998764 47999999987631
Q ss_pred -----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000907 742 -----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 742 -----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 816 (1230)
...++.++|++|++.+++.+|+.||+.+...... .....+..++++++++.+++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 139 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSGG 139 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHH
Confidence 2346789999999999999999999987642111 1233344566788999999987666653 579999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 140 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~ 204 (213)
T cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADR 204 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999877999999999986 45555665
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=284.48 Aligned_cols=201 Identities=26% Similarity=0.378 Sum_probs=166.5
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++.++++..+. ...+...||++|++.+++||.+||+|||||||||||-+++|+..+ .+|+|.+.|++..
T Consensus 7 i~~~~l~ktvg---------~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~--ssGeV~l~G~~L~ 75 (228)
T COG4181 7 IEVHHLSKTVG---------QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP--SSGEVRLLGQPLH 75 (228)
T ss_pred eehhhhhhhhc---------CCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC--CCceEEEcCcchh
Confidence 45556655442 123556899999999999999999999999999999999998765 4799999998753
Q ss_pred h-------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000907 741 Q-------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGL 813 (1230)
Q Consensus 741 ~-------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l 813 (1230)
. .-+.+.+|+|+|...+.|++|..||+.....++... ..+..+...+.++.+||.+..+.+ +.+|
T Consensus 76 ~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~---~~~~~~~A~~lL~~vGLg~Rl~Hy-----P~qL 147 (228)
T COG4181 76 KLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGES---SADSRAGAKALLEAVGLGKRLTHY-----PAQL 147 (228)
T ss_pred hcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCc---cccHHHHHHHHHHHhCcccccccC-----cccc
Confidence 2 124578999999999999999999999988877532 223344578899999999877766 4589
Q ss_pred CHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 814 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 814 SgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||+|||+||||++..|+|||.||||-+||..+..+|.++|-.+.+ .|.|.|++||||+.. ...|+
T Consensus 148 SGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA--~Rc~R 215 (228)
T COG4181 148 SGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLA--ARCDR 215 (228)
T ss_pred CchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHH--Hhhhh
Confidence 99999999999999999999999999999999999999999988764 599999999999733 44454
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=316.19 Aligned_cols=193 Identities=28% Similarity=0.391 Sum_probs=162.1
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 66 (208)
T cd03268 2 KTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP--DSGEITFDGKSYQK 66 (208)
T ss_pred EEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCCcccc
Confidence 5677777652 34699999999999999999999999999999999998764 47999999987542
Q ss_pred -hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000907 742 -ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 820 (1230)
Q Consensus 742 -~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr 820 (1230)
...++.++|++|++.+++.+||+||+.+....+. . .+++++++++.+++.+..++.+ +.||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 134 (208)
T cd03268 67 NIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQR 134 (208)
T ss_pred hHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHH
Confidence 2345679999999999999999999988654321 1 1345788999999987776653 4699999999
Q ss_pred HHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 821 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 821 l~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++||++|+.+|++++|||||+|||+.+++.+.+.|++++++|+|+|++||++. ++.+..|+
T Consensus 135 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~ 195 (208)
T cd03268 135 LGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADR 195 (208)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCE
Confidence 99999999999999999999999999999999999998777999999999987 44445565
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=319.04 Aligned_cols=204 Identities=20% Similarity=0.331 Sum_probs=166.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|++..-. .+...+++|||++++||++||.|-.|-|-+-|+.+|+|..++. +|+|.++|.+.
T Consensus 257 vL~V~~L~v~~~------------~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~--~G~I~l~G~~v 322 (501)
T COG3845 257 VLEVEDLSVKDR------------RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA--SGRILLNGKDV 322 (501)
T ss_pred EEEEeeeEeecC------------CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC--CceEEECCEec
Confidence 477788876432 1246899999999999999999999999999999999987543 49999999985
Q ss_pred ----Ch-hcccceEEEEccCC---ccCCCCCHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 000907 740 ----NQ-ETFTRISGYCEQND---IHSPYVTVYESLLYSAWLRL----SSEVNSKTREMFVEEVMELVELNPLRQALVGL 807 (1230)
Q Consensus 740 ----~~-~~~~~~~~~v~q~~---~~~~~ltv~e~l~~~~~~~~----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 807 (1230)
+. ...+..++|||.|. .+.+.+|+.||+.+...-+. ..-.......+..+++++.++.......
T Consensus 323 ~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~---- 398 (501)
T COG3845 323 LGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPD---- 398 (501)
T ss_pred cccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCC----
Confidence 22 23445789999875 46788999999987643221 1123445667788999999988632211
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
...+.||||++||+-+||+|.++|++|+..+||.|||..+.+.|.+.|.+.+++|+.|++++-+.. |++++.|+
T Consensus 399 ~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDr 472 (501)
T COG3845 399 APARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDR 472 (501)
T ss_pred cchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhhe
Confidence 124679999999999999999999999999999999999999999999999999999999999987 89999998
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=339.41 Aligned_cols=202 Identities=25% Similarity=0.348 Sum_probs=170.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||||+|+|..++ .+|+|.++|.+.
T Consensus 3 ~L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p--~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP--TAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEEc
Confidence 377888888762 45799999999999999999999999999999999998765 479999999876
Q ss_pred Ch---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSS-EVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
.. ...++.+||++|+..+++.+||+|++.+........ ........++++++++.+++.+..++.+ +.|||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSg 142 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSG 142 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 43 345678999999999989999999998753211100 0012234567899999999998877764 57999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++|||||+++|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+..|+
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adr 208 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDE 208 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999999877999999999987 56677787
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=318.55 Aligned_cols=196 Identities=25% Similarity=0.358 Sum_probs=163.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEc
Confidence 37889999877310 0124699999999999999999999999999999999998764 479999999876
Q ss_pred Chh------cc-cceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000907 740 NQE------TF-TRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNG 812 (1230)
Q Consensus 740 ~~~------~~-~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 812 (1230)
... .. ++.++|++|++.+++.+|++||+.+....+ .....+.+++++++++.+|+.+..++. ++.
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhh
Confidence 421 12 257999999999999999999998865432 122334456788999999998766655 347
Q ss_pred CCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCH
Q 000907 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSI 874 (1230)
Q Consensus 813 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~ 874 (1230)
||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++..
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~ 208 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL 208 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 999999999999999999999999999999999999999999999875 58999999999863
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=317.19 Aligned_cols=186 Identities=28% Similarity=0.374 Sum_probs=155.4
Q ss_pred eeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh---hcccceEEEEccCCc-cCCCC
Q 000907 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETFTRISGYCEQNDI-HSPYV 761 (1230)
Q Consensus 686 ~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~-~~~~l 761 (1230)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP--TSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 5699999999999999999999999999999999998765 47999999987532 234567999999974 36678
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCC
Q 000907 762 TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 841 (1230)
Q Consensus 762 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPts 841 (1230)
|++||+.+....+ ........+.++++++.+++.+..++.+ +.||||||||++|||||+.+|++|+|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998764332 1223334456788999999987666553 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 842 GLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 842 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||+.++..+.+.|++++++|+|||++||++. ++....|+
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~ 203 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADR 203 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999998877999999999986 44455665
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=330.08 Aligned_cols=198 Identities=25% Similarity=0.367 Sum_probs=169.6
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++++. ++.+|+|+||++++||++||+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~--~~G~i~i~g~~~ 66 (301)
T TIGR03522 2 SIRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP--DSGSVQVCGEDV 66 (301)
T ss_pred EEEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEc
Confidence 367888887762 35799999999999999999999999999999999998765 479999999876
Q ss_pred Ch--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000907 740 NQ--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 740 ~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 817 (1230)
.. ...++.+||++|++.+++.+||.||+.+.+.++. ...++..++++++++.+|+.+..++.+ +.|||||
T Consensus 67 ~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~ 138 (301)
T TIGR03522 67 LQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGY 138 (301)
T ss_pred ccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHH
Confidence 43 2345789999999999999999999998765532 233344556889999999998877764 4699999
Q ss_pred HHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 818 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 818 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||++||+||+++|++|+|||||+|||+.+++.+++.|+++++ ++|||++||++. ++.+..|+
T Consensus 139 ~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~ 201 (301)
T TIGR03522 139 RQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDR 201 (301)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999864 799999999987 66677787
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=320.75 Aligned_cols=202 Identities=25% Similarity=0.309 Sum_probs=166.7
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+... .+.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 5677888766310 0113699999999999999999999999999999999998765 4799999998764
Q ss_pred hh------cccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000907 741 QE------TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 814 (1230)
Q Consensus 741 ~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 814 (1230)
.. ..++.++|++|++.+++.+|+.||+.+....+. .......+.++++++.+++.+..++.. +.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYP-----AQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCC
Confidence 21 235679999999999999999999988654331 233344556889999999987766653 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~ 210 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDR 210 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999998765 899999999986 55666776
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=316.20 Aligned_cols=199 Identities=24% Similarity=0.309 Sum_probs=164.9
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP--SAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 56788887762 124699999999999999999999999999999999998764 4799999998753
Q ss_pred h---h---cccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000907 741 Q---E---TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 814 (1230)
Q Consensus 741 ~---~---~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 814 (1230)
. . .+++.++|++|++.+++.+|++||+.+....+ .....+..+.++++++.+++.+..++. +..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----chhCC
Confidence 2 1 24568999999998888999999998865432 123334445678899999998766654 34799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++|.|+|++||++. ++-+..|+
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~ 206 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYR 206 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999998777899999999986 34445565
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=321.07 Aligned_cols=196 Identities=25% Similarity=0.339 Sum_probs=164.4
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY--QHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 56788887652 24699999999999999999999999999999999998765 3799999998764
Q ss_pred hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000907 741 QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 820 (1230)
Q Consensus 741 ~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr 820 (1230)
. ..+.++|++|++.+++.+||.||+.+....+ .....+..++++++++.+++.+..++. +..||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHH
Confidence 3 2345899999999999999999998764332 123334456688999999998766654 34799999999
Q ss_pred HHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 821 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 821 l~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++. ++.+..|+
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~ 198 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATE 198 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999854 5899999999987 55666776
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=322.80 Aligned_cols=201 Identities=26% Similarity=0.320 Sum_probs=162.5
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 67 (241)
T cd03256 2 EVENLSKTYP------------NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP--TSGSVLIDGTDINK 67 (241)
T ss_pred EEeeEEEecC------------CccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEeccc
Confidence 4677776652 114699999999999999999999999999999999998764 47999999987542
Q ss_pred ------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000907 742 ------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRL-----SSEVNSKTREMFVEEVMELVELNPLRQALVGLPGV 810 (1230)
Q Consensus 742 ------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 810 (1230)
...++.++|++|++.+++.+||+||+.+...... ..........++++++++.+++.+..++. +
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 142 (241)
T cd03256 68 LKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-----A 142 (241)
T ss_pred cCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----c
Confidence 2345679999999999999999999987532100 00111123345678899999998766654 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 143 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~ 214 (241)
T cd03256 143 DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADR 214 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 579999999999999999999999999999999999999999999998754 899999999987 45566676
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=318.42 Aligned_cols=198 Identities=23% Similarity=0.285 Sum_probs=162.3
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC-----CCCeEEEEEEECC
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRK-----TRGYITGNITISG 736 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~-----~~~~~~G~i~~~g 736 (1230)
+++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++ .+|+|.++|
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~--~~G~i~~~g 66 (227)
T cd03260 2 ELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP--DEGEVLLDG 66 (227)
T ss_pred EEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC--CCeEEEECC
Confidence 5677777652 346999999999999999999999999999999999987 43 479999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
.+... ...++.++|++|++.++ .+||+||+.+....+. .....+.+++++++++.+++.+..+.... +.
T Consensus 67 ~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~ 140 (227)
T cd03260 67 KDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---AL 140 (227)
T ss_pred EEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cc
Confidence 87532 23456799999998888 7999999988654321 11222234567889999999876555420 25
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||++. ++.+..|+
T Consensus 141 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~ 209 (227)
T cd03260 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADR 209 (227)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCE
Confidence 79999999999999999999999999999999999999999999999776 99999999987 55566776
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=316.12 Aligned_cols=199 Identities=26% Similarity=0.392 Sum_probs=164.7
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+.. +.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (220)
T cd03263 1 LQIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP--TSGTAYINGYSIR 67 (220)
T ss_pred CEEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecc
Confidence 356777776531 125699999999999999999999999999999999998765 4799999998764
Q ss_pred h--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 741 Q--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 741 ~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
. ..+++.++|++|++.+++.+|++||+.+....+. .......++++++++.+++.+..++.+ ..||||||
T Consensus 68 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 139 (220)
T cd03263 68 TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMK 139 (220)
T ss_pred cchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHH
Confidence 2 2345679999999999999999999988654331 223334456789999999987766653 47999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+..|+
T Consensus 140 qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~ 201 (220)
T cd03263 140 RKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDR 201 (220)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCE
Confidence 999999999999999999999999999999999999999875 699999999987 45556676
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=308.53 Aligned_cols=179 Identities=26% Similarity=0.343 Sum_probs=150.6
Q ss_pred ceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh-----hcccceEEEEccCCc-cC
Q 000907 685 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-----ETFTRISGYCEQNDI-HS 758 (1230)
Q Consensus 685 ~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~-~~ 758 (1230)
++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++. ..
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP--QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 35699999999999999999999999999999999998765 47999999987531 134567999999973 23
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeC
Q 000907 759 PYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 838 (1230)
Q Consensus 759 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDE 838 (1230)
...||+||+.+..... .....+..+.++++++.+++.+..++.+ +.||||||||++|||||+.+|++++|||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3579999998864322 1233334456788999999987766653 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 839 PTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 839 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
||+|||+.++..+.+.|++++++|+|||++||++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999998877999999999985
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=315.16 Aligned_cols=201 Identities=23% Similarity=0.321 Sum_probs=163.4
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+... .+.+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEhh
Confidence 5678888776310 1124699999999999999999999999999999999998765 4799999998753
Q ss_pred hh---c---cc-ceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000907 741 QE---T---FT-RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGL 813 (1230)
Q Consensus 741 ~~---~---~~-~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l 813 (1230)
.. . ++ +.++|++|++.+++.+|++||+.+....+. ....+..+.+.++++.+|+.+..++.. +.|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 21 1 22 579999999999989999999988654321 223333456788999999987666553 479
Q ss_pred CHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 814 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 814 SgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+ +..|+
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~ 210 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDR 210 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCE
Confidence 999999999999999999999999999999999999999999998754 899999999986 33 33465
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=312.48 Aligned_cols=186 Identities=24% Similarity=0.360 Sum_probs=156.9
Q ss_pred ceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC---h----hcccceEEEEccCCcc
Q 000907 685 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN---Q----ETFTRISGYCEQNDIH 757 (1230)
Q Consensus 685 ~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---~----~~~~~~~~~v~q~~~~ 757 (1230)
++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.. . ...++.++|++|++.+
T Consensus 10 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 87 (206)
T TIGR03608 10 DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF--DSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFAL 87 (206)
T ss_pred CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccchhhHHHHHHhCeeEEecchhh
Confidence 35699999999999999999999999999999999998765 4799999998742 1 1245679999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEe
Q 000907 758 SPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 837 (1230)
Q Consensus 758 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlD 837 (1230)
++.+|++||+.+..... ........+.++++++.+++.+..++.+ .+||||||||++||+||+.+|++|+||
T Consensus 88 ~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllD 159 (206)
T TIGR03608 88 IENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILAD 159 (206)
T ss_pred ccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 99999999999865432 1233344566889999999987766653 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 838 EPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 838 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||+|||+.++..+.+.|+++.++|.|+|+++|++.. .+..|+
T Consensus 160 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~--~~~~d~ 202 (206)
T TIGR03608 160 EPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEV--AKQADR 202 (206)
T ss_pred CCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH--HhhcCE
Confidence 9999999999999999999987779999999999862 244454
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=316.68 Aligned_cols=195 Identities=28% Similarity=0.405 Sum_probs=159.8
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+ +++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 66 (222)
T cd03224 2 EVENLNAGY-------------GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP--RSGSIRFDGRDITG 66 (222)
T ss_pred EEeeEEeec-------------CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcCC
Confidence 567777655 234699999999999999999999999999999999998765 47999999987542
Q ss_pred h---c-ccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCCCCCCCCHH
Q 000907 742 E---T-FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELV-ELNPLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 742 ~---~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~~~~~~~~~lSgG 816 (1230)
. . .++.++|++|++.+++.+|++||+.+...... .....+.++++++.+ ++.+..++. ++.||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G 136 (222)
T cd03224 67 LPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGG 136 (222)
T ss_pred CCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHH
Confidence 1 1 24579999999999999999999988654321 122234566778877 466555554 3479999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 137 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~ 201 (222)
T cd03224 137 EQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADR 201 (222)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccE
Confidence 999999999999999999999999999999999999999998777899999999986 45566676
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=319.20 Aligned_cols=197 Identities=26% Similarity=0.361 Sum_probs=164.1
Q ss_pred EEeeeEEEEecCcccccccccCCc-eeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDK-LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
+++|+++.+. + +.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 2 ~~~~l~~~~~-------------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 66 (242)
T cd03295 2 EFENVTKRYG-------------GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP--TSGEIFIDGEDIR 66 (242)
T ss_pred EEEEEEEEeC-------------CcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCeEcC
Confidence 4677777653 2 4699999999999999999999999999999999998765 4799999998753
Q ss_pred h---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCCCCCCCCH
Q 000907 741 Q---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP--LRQALVGLPGVNGLST 815 (1230)
Q Consensus 741 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~~~~~~~~~~~~~lSg 815 (1230)
. ...++.++|++|++.+++.+||+||+.+....+ ........+.++++++.+++.+ ..++. ++.|||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~ 138 (242)
T cd03295 67 EQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRY-----PHELSG 138 (242)
T ss_pred cCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCH
Confidence 2 234567999999999999999999998865432 1233444566889999999985 55544 357999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+..|+
T Consensus 139 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~ 205 (242)
T cd03295 139 GQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADR 205 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999998764 899999999986 45566676
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=317.74 Aligned_cols=199 Identities=21% Similarity=0.335 Sum_probs=166.0
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI--TSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 56788887652 34699999999999999999999999999999999998764 4799999998764
Q ss_pred h-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 741 Q-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 741 ~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
. ...++.++|++|++.+++.+||.||+.+...... ........+.++++++.+|+.+..+..+ +.|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYP-----SELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCH
Confidence 2 2345679999999999999999999987542111 1233444566889999999987666553 47999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+..|+
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~ 205 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASR 205 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999998777999999999986 45556676
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=320.06 Aligned_cols=199 Identities=25% Similarity=0.343 Sum_probs=166.0
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP--EAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEcc
Confidence 67888887762 24699999999999999999999999999999999998764 4799999998753
Q ss_pred h-----------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000907 741 Q-----------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPG 809 (1230)
Q Consensus 741 ~-----------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 809 (1230)
. ...++.++|++|++.+++.+|+.||+.+...... ........+.++++++.+|+.+..++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~----- 141 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY----- 141 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----
Confidence 2 2345679999999999999999999987532111 123334456688899999998766654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 142 ~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~ 213 (250)
T PRK11264 142 PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADR 213 (250)
T ss_pred hhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 3579999999999999999999999999999999999999999999998877999999999986 45566676
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=316.42 Aligned_cols=187 Identities=27% Similarity=0.413 Sum_probs=153.6
Q ss_pred eeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChhcccceEEEEccCCccC--CCCCH
Q 000907 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHS--PYVTV 763 (1230)
Q Consensus 686 ~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~--~~ltv 763 (1230)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.. ..++.++|++|++.+. +.+||
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP--TSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 5699999999999999999999999999999999998765 3799999998653 3456799999998763 34799
Q ss_pred HHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCC
Q 000907 764 YESLLYSAWLRLS-SEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 842 (1230)
Q Consensus 764 ~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsg 842 (1230)
+||+.+....... .........++++++++.+++.+..++.+ ..||||||||++||+||+.+|++|+|||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9999875322110 00111233456889999999987666553 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 843 LDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 843 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||+.++..+.+.|++++++|+|||++||++. ++.+..|+
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~ 201 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDR 201 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 9999999999999998777999999999986 45556676
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=324.91 Aligned_cols=203 Identities=23% Similarity=0.310 Sum_probs=166.1
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.++.. ....+.+|+|||+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~--------~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEG--------TPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP--TSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCC--------CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEECCEECC
Confidence 6788998877411 00124699999999999999999999999999999999998765 4799999998864
Q ss_pred h-----hcccceEEEEccCCc-cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCCCCCC
Q 000907 741 Q-----ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN--PLRQALVGLPGVNG 812 (1230)
Q Consensus 741 ~-----~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~~~~~~~~ 812 (1230)
. ...++.+||++|++. .+...||+||+.+..... ....++..++++++++.+||. +..++. ++.
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PFE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC-----ccc
Confidence 3 234678999999863 334579999999865432 234455556789999999996 555554 457
Q ss_pred CCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 813 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++....|+
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dr 214 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADR 214 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999999999765 999999999986 45566787
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=321.55 Aligned_cols=202 Identities=23% Similarity=0.277 Sum_probs=163.0
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYP------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP--SSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecC------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CccEEEECCEEhh
Confidence 46777776652 134699999999999999999999999999999999998765 4799999998753
Q ss_pred h------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000907 741 Q------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRL-----SSEVNSKTREMFVEEVMELVELNPLRQALVGLPG 809 (1230)
Q Consensus 741 ~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 809 (1230)
. ..+++.++|++|++.+++.+||+||+.+...... .........+++++++++.+++.+..+..
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 142 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR----- 142 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----
Confidence 2 1245679999999999999999999976421100 00011223345678899999998766654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+..|+
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~ 215 (243)
T TIGR02315 143 ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADR 215 (243)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCe
Confidence 3579999999999999999999999999999999999999999999998654 899999999987 45566776
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=301.18 Aligned_cols=196 Identities=27% Similarity=0.356 Sum_probs=168.7
Q ss_pred ccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh----hcccceEEEEccC
Q 000907 679 RGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ----ETFTRISGYCEQN 754 (1230)
Q Consensus 679 ~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~ 754 (1230)
+.+++++..+++|||+++++||+++|+||||||||||+|+|+|.++|. +|+|.++|.++.. ...+..++--+|.
T Consensus 10 l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~--~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~ 87 (250)
T COG0411 10 LSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS--SGTVIFRGRDITGLPPHRIARLGIARTFQI 87 (250)
T ss_pred ceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC--CceEEECCcccCCCCHHHHHhccceeeccc
Confidence 334567889999999999999999999999999999999999998864 7999999998653 2234567888999
Q ss_pred CccCCCCCHHHHHHHHHHhcC--------CCC-CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHH
Q 000907 755 DIHSPYVTVYESLLYSAWLRL--------SSE-VNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAV 825 (1230)
Q Consensus 755 ~~~~~~ltv~e~l~~~~~~~~--------~~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~ 825 (1230)
..+|+.|||.||+..+...+. +.. ...++..+++.++++.+||.+.+|...| +||+||||||.|||
T Consensus 88 ~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIAr 162 (250)
T COG0411 88 TRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIAR 162 (250)
T ss_pred ccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHH
Confidence 999999999999998755331 111 1234556778999999999999999865 59999999999999
Q ss_pred HHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 826 ELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 826 al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||+++|++|+||||.+||.+..+.++.+.|+++.+ .|.||+++.|+-. -++.+.|+
T Consensus 163 ALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dr 219 (250)
T COG0411 163 ALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADR 219 (250)
T ss_pred HHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccE
Confidence 99999999999999999999999999999999987 4799999999987 57788888
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=321.14 Aligned_cols=200 Identities=21% Similarity=0.306 Sum_probs=166.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP--DHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEc
Confidence 478899988762 35699999999999999999999999999999999998765 479999999875
Q ss_pred Chh------cccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000907 740 NQE------TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGL 813 (1230)
Q Consensus 740 ~~~------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l 813 (1230)
... ..++.++|++|+..+++.+||.||+.+...... ........+.++++++.+++.+..++.+ ..|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 421 235679999999999999999999987643211 1233334456788999999987776653 479
Q ss_pred CHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 814 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 814 SgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+..|+
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~ 213 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADH 213 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCE
Confidence 999999999999999999999999999999999999999999998755 899999999975 45566776
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=308.31 Aligned_cols=187 Identities=23% Similarity=0.330 Sum_probs=159.2
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP--DAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcc
Confidence 46677877652 35699999999999999999999999999999999998765 4799999998754
Q ss_pred h--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 741 Q--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 741 ~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
. ...++.++|++|++.+++.+|+.||+.+....+. . ..++.++++++.+|+.+..++. ++.||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHH
Confidence 2 2345678999999999999999999988654321 1 1235578899999998766655 347999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
||++||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++.
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 190 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL 190 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh
Confidence 9999999999999999999999999999999999999998777899999999976
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=311.32 Aligned_cols=196 Identities=35% Similarity=0.477 Sum_probs=162.8
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+|+|+|+++++| +++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 64 (211)
T cd03264 1 LQLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP--SSGTIRIDGQDVL 64 (211)
T ss_pred CEEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCCccc
Confidence 35677777652 346999999999999 9999999999999999999998765 4799999998753
Q ss_pred h--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 741 Q--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 741 ~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
. ...++.++|++|++.+++.+||.||+.+....+. ....+..+.++++++.+++.+..++.+ ..||||||
T Consensus 65 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 136 (211)
T cd03264 65 KQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMR 136 (211)
T ss_pred cchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHH
Confidence 2 2345679999999999999999999988654431 222333456788999999987766653 47999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+..|+
T Consensus 137 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~ 198 (211)
T cd03264 137 RRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQ 198 (211)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999875 599999999986 34455666
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=345.08 Aligned_cols=201 Identities=26% Similarity=0.411 Sum_probs=166.0
Q ss_pred CceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCe
Q 000907 658 PFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGY 737 (1230)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~ 737 (1230)
...++|+||++.|+.+ .+..+|+|+||+|+|||++||+||||+||||+.++|...+.| .+|+|.+||.
T Consensus 463 ~G~IeF~~VsFaYP~R----------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~P--tsG~IllDG~ 530 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTR----------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDP--TSGRILLDGV 530 (716)
T ss_pred cceEEEEEeeeecCCC----------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCC--CCCeEEECCe
Confidence 4579999999999864 356799999999999999999999999999999999998876 4899999999
Q ss_pred ecC---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCCC
Q 000907 738 PKN---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREM-----FVEEVMELVELNPLRQALVGLPG 809 (1230)
Q Consensus 738 ~~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~l~~~~~~~~~~~~ 809 (1230)
|+. ...+++.+|+|.|+|.+|. -||+||+.|+.. ..+.++..+ .+.+.+. ++.+-.||.+|..+
T Consensus 531 ~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGEkG 602 (716)
T KOG0058|consen 531 PISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEEIEAAAKMANAHEFIT--NFPDGYNTVVGEKG 602 (716)
T ss_pred ehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCccccccccCCcc
Confidence 864 3567899999999999986 599999999743 222222211 1222222 45667899999765
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
. +||||||||++|||||++||+||+|||.||+||+++...|.+.|.+.. +++|||++.|..|. .+.-|+
T Consensus 603 ~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~-~~rTVlvIAHRLST--V~~Ad~ 671 (716)
T KOG0058|consen 603 S-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLM-QGRTVLVIAHRLST--VRHADQ 671 (716)
T ss_pred c-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhh-cCCeEEEEehhhhH--hhhccE
Confidence 4 699999999999999999999999999999999999999999998875 46999999998873 344444
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=321.56 Aligned_cols=200 Identities=26% Similarity=0.339 Sum_probs=166.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYK------------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP--QRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeC------------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 378899988763 123599999999999999999999999999999999998765 479999999876
Q ss_pred Ch---hcccceEEEEccCCc-cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 740 NQ---ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
.. ...++.+||++|++. .++..||.||+.|..... .......+++++++++.+++.+..++.+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCH
Confidence 42 234567999999863 445689999998864321 2233444566889999999987777654 47999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+..|+
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~ 207 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQ 207 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999999877999999999986 45567787
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=317.48 Aligned_cols=191 Identities=21% Similarity=0.290 Sum_probs=162.8
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP--SAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEH
Confidence 588999998773 24699999999999999999999999999999999998765 379999999765
Q ss_pred ChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000907 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 819 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrq 819 (1230)
. ..++.++|++|++.+++.+||+||+.+... . ..+++++++++.+++.+..+.. +..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-------~--~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-------G--QWRDAALQALAAVGLADRANEW-----PAALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc-------c--hHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHH
Confidence 3 345679999999999998999999987421 0 1234578899999998766655 3579999999
Q ss_pred HHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 820 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 820 rl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||++||++. .+.+..|+
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~ 203 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADR 203 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999864 5899999999987 45566776
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=332.92 Aligned_cols=189 Identities=23% Similarity=0.274 Sum_probs=161.5
Q ss_pred CCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh---hc----ccceEEEEccCC
Q 000907 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ET----FTRISGYCEQND 755 (1230)
Q Consensus 683 ~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~----~~~~~~~v~q~~ 755 (1230)
++...+|+|+||++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++.. .. .++.++|++|+.
T Consensus 38 ~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p--~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~ 115 (400)
T PRK10070 38 TGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP--TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSF 115 (400)
T ss_pred cCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCC
Confidence 4556799999999999999999999999999999999998765 37999999988642 11 235799999999
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeE
Q 000907 756 IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 835 (1230)
Q Consensus 756 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~ill 835 (1230)
.+++.+||+||+.+....+. ....+..++++++++.+||.+..++.. +.||||||||++|||||+.+|++||
T Consensus 116 ~l~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLL 187 (400)
T PRK10070 116 ALMPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILL 187 (400)
T ss_pred cCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999998765431 233444567889999999988777653 5799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 836 MDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 836 lDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||+|||+.++..+.+.|+++.+ .|+|||++||++. ++..+.|+
T Consensus 188 LDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dr 234 (400)
T PRK10070 188 MDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDR 234 (400)
T ss_pred EECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCE
Confidence 9999999999999999999999865 5899999999986 56677787
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=295.53 Aligned_cols=197 Identities=28% Similarity=0.406 Sum_probs=160.5
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|++..| ++.++|++||+++++||+++|+||||||||||||+|+|..++ .+|+|.++|.++.
T Consensus 4 L~v~~l~~~Y-------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~--~~G~I~~~G~dit 68 (237)
T COG0410 4 LEVENLSAGY-------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP--RSGRIIFDGEDIT 68 (237)
T ss_pred eeEEeEeecc-------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeeEEECCeecC
Confidence 5666666544 567899999999999999999999999999999999998765 3799999999875
Q ss_pred h----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCCCCCCCCH
Q 000907 741 Q----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE-LNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 741 ~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~~~~~~~~~lSg 815 (1230)
. ...++.++||||....||.+||+|||..++..+.. +......++++.+.+- |.+..+.+.| .|||
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSG 139 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSG 139 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCCh
Confidence 3 34567899999999999999999999987654422 1111222667777764 4555555544 5999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||-++|||||+.+|++|+|||||.||-|.-.++|.+.+++++++ |.||+++.+... ...+.-|+
T Consensus 140 GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr 206 (237)
T COG0410 140 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADR 206 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCE
Confidence 9999999999999999999999999999999999999999999865 779988887655 34456666
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=316.81 Aligned_cols=199 Identities=28% Similarity=0.392 Sum_probs=165.7
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 68 (241)
T PRK10895 4 LTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR--DAGNIIIDDEDIS 68 (241)
T ss_pred EEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 67788887652 34699999999999999999999999999999999998764 4799999998764
Q ss_pred h----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000907 741 Q----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 741 ~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 816 (1230)
. ...++.++|++|++.+++.+||.||+.+....+. ....++.+.+++++++.+++.+..+.. .+.||||
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 141 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGG 141 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHH
Confidence 2 1235679999999999999999999987643221 122334456688999999998766554 3579999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||++||++|+.+|++|+|||||+|||+.++..+.+.+++++++|+|||+++|++. ++.+..|+
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~ 206 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCER 206 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCE
Confidence 999999999999999999999999999999999999999998777999999999985 56666776
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=314.15 Aligned_cols=203 Identities=24% Similarity=0.280 Sum_probs=160.6
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+... .....+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP--TSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 5678888776310 0013699999999999999999999999999999999998765 4799999998764
Q ss_pred h------hcccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHH-HHHHHHHcCCC-ccccccccCCCC
Q 000907 741 Q------ETFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMF-VEEVMELVELN-PLRQALVGLPGV 810 (1230)
Q Consensus 741 ~------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~l~l~-~~~~~~~~~~~~ 810 (1230)
. ..+++.++|++|++ .+++.+||+||+.+........ ......+. ++++++.+++. +..+.. +
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 143 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL--SKKEARKEAVLLLLVGVGLPEEVLNRY-----P 143 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC--cHHHHHHHHHHHHHHHCCCChhHhhCC-----c
Confidence 2 23456899999998 4667899999998764432211 11122222 35788999985 445544 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+..|+
T Consensus 144 ~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~ 215 (228)
T cd03257 144 HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADR 215 (228)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCe
Confidence 479999999999999999999999999999999999999999999998765 899999999986 45556676
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=312.88 Aligned_cols=197 Identities=26% Similarity=0.374 Sum_probs=162.8
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++++. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA--QEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcc
Confidence 56778877652 34699999999999999999999999999999999998765 3799999998753
Q ss_pred h--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 741 Q--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 741 ~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
. ...++.++|++|++.+++.+|++||+.+....+ ........+.++++++.+|+.+..++.+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 2 122357999999998888999999998765432 1233334456788999999987766653 46999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +|+|+|+++|++.. + +..|+
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~ 201 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-I-EADDR 201 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-H-hhCCE
Confidence 999999999999999999999999999999999999999874 58999999999873 2 23555
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=323.05 Aligned_cols=202 Identities=26% Similarity=0.293 Sum_probs=165.7
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+... ....+.+|+|||++|++||+++|+||||||||||+++|+|..++ .+|+|.++|+++.
T Consensus 3 l~~~~l~~~y~~~--------~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYK--------TPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP--TSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCC--------CcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 7889999988421 00124699999999999999999999999999999999998765 3799999998763
Q ss_pred h-------hcccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000907 741 Q-------ETFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGV 810 (1230)
Q Consensus 741 ~-------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 810 (1230)
. ...++.+|||+|++ .++ ..||.||+.|..... .....+..++++++++.++|. +..++. +
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 143 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----P 143 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----c
Confidence 1 23456799999986 344 479999998874322 223444456789999999996 555554 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||++. ++.+..|+
T Consensus 144 ~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~dr 215 (290)
T PRK13634 144 FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQ 215 (290)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 579999999999999999999999999999999999999999999998764 999999999987 56677887
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=316.68 Aligned_cols=200 Identities=22% Similarity=0.268 Sum_probs=166.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEc
Confidence 478899988763 34699999999999999999999999999999999998764 479999999865
Q ss_pred Ch----------------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-c
Q 000907 740 NQ----------------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR-Q 802 (1230)
Q Consensus 740 ~~----------------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~ 802 (1230)
.. ..+++.++|++|++.+++.+||+||+.+...... ........+++.++++.+|+.+.. +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~ 147 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQG 147 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 31 2345679999999999999999999987532111 123344456788999999997653 4
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 803 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 803 ~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.. .+.||||||||++|||||+.+|++++|||||+|||+.+++.+.+.|++++++|+|||++||++. ++.+..|+
T Consensus 148 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~ 221 (257)
T PRK10619 148 KY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 221 (257)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 43 3579999999999999999999999999999999999999999999999877999999999986 45556676
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=304.75 Aligned_cols=185 Identities=24% Similarity=0.325 Sum_probs=156.6
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (198)
T TIGR01189 2 AARNLACSR-------------GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP--DSGEVRWNGTALAE 66 (198)
T ss_pred EEEEEEEEE-------------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEccc
Confidence 466777655 235799999999999999999999999999999999998765 47999999987532
Q ss_pred --hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000907 742 --ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 819 (1230)
Q Consensus 742 --~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrq 819 (1230)
..+++.++|++|++.+++.+|+.||+.+....+. . + ++.++++++.+++.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 134 (198)
T TIGR01189 67 QRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQR 134 (198)
T ss_pred chHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHH
Confidence 2345678999999888888999999987643321 1 1 234688899999987766654 469999999
Q ss_pred HHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 820 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 820 rl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
|++||++++.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++.
T Consensus 135 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 135 RLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence 999999999999999999999999999999999999998778999999999985
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=323.31 Aligned_cols=204 Identities=24% Similarity=0.304 Sum_probs=165.8
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++.. ......+|+|+|+++++||++||+||||||||||+++|+|..++. +|+|.++|.+.
T Consensus 2 ~i~~~~l~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~--~G~i~~~g~~~ 71 (305)
T PRK13651 2 QIKVKNIVKIFNKK--------LPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD--TGTIEWIFKDE 71 (305)
T ss_pred EEEEEEEEEEECCC--------CCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC--CcEEEEeceec
Confidence 37889999987421 011235999999999999999999999999999999999987653 69999998653
Q ss_pred C---------------------------hhcccceEEEEccCC-ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 000907 740 N---------------------------QETFTRISGYCEQND-IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEV 791 (1230)
Q Consensus 740 ~---------------------------~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1230)
. ....++.+|||+|++ ..+...||+||+.|..... ....++..++++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~ 148 (305)
T PRK13651 72 KNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKY 148 (305)
T ss_pred ccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHH
Confidence 1 123467899999985 2344579999999865432 23445556678999
Q ss_pred HHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q 000907 792 MELVELN-PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIH 870 (1230)
Q Consensus 792 l~~l~l~-~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H 870 (1230)
++.+||. +..++. +..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||
T Consensus 149 l~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtH 223 (305)
T PRK13651 149 IELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223 (305)
T ss_pred HHHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEee
Confidence 9999996 556654 3579999999999999999999999999999999999999999999999877999999999
Q ss_pred CCCHHHHHHHhc
Q 000907 871 QPSIDIFEAFDA 882 (1230)
Q Consensus 871 ~~~~~i~~~fd~ 882 (1230)
++. .+.+..|+
T Consensus 224 d~~-~~~~~adr 234 (305)
T PRK13651 224 DLD-NVLEWTKR 234 (305)
T ss_pred CHH-HHHHhCCE
Confidence 976 45567777
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=321.85 Aligned_cols=201 Identities=24% Similarity=0.311 Sum_probs=167.6
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++. .+.+.+|+|+|++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~----------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKE----------DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA--ESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCC----------CCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 3788999988741 1124599999999999999999999999999999999998765 379999999886
Q ss_pred Ch---hcccceEEEEccCC-ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 740 NQ---ETFTRISGYCEQND-IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
.. ...++.+||++|++ ..++..||+||+.|..... ....++..++++++++.+||.+..+... ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 42 23456899999997 3677789999998864322 2344455567899999999987776653 47999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||++.. + ...|+
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~-~-~~~dr 209 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE-V-ALSDR 209 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCE
Confidence 9999999999999999999999999999999999999999999865 9999999999863 4 45776
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=315.34 Aligned_cols=199 Identities=24% Similarity=0.323 Sum_probs=163.5
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECCe
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISGY 737 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~ 737 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. ..+|+|.++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 56788887663 246999999999999999999999999999999999987542 12799999998
Q ss_pred ecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCC
Q 000907 738 PKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN----PLRQALVGLP 808 (1230)
Q Consensus 738 ~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~~ 808 (1230)
+... ...++.++|++|++.+++ .|+.||+.+....+. .....+..+.++++++.+|+. +..++.
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 141 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS---- 141 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC----
Confidence 7642 234568999999998888 999999988654331 122334456688899999997 444443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 142 -~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~ 212 (247)
T TIGR00972 142 -ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDR 212 (247)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCE
Confidence 457999999999999999999999999999999999999999999999876 489999999987 55566776
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=314.61 Aligned_cols=199 Identities=24% Similarity=0.319 Sum_probs=165.1
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 66 (242)
T PRK11124 2 SIQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNIAGNHF 66 (242)
T ss_pred EEEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEec
Confidence 367888888763 24699999999999999999999999999999999998765 479999999875
Q ss_pred C---------hhcccceEEEEccCCccCCCCCHHHHHHHH-HHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000907 740 N---------QETFTRISGYCEQNDIHSPYVTVYESLLYS-AWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPG 809 (1230)
Q Consensus 740 ~---------~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 809 (1230)
. ....++.++|++|++.+++.+|+.||+.+. .... .....+..+.++++++.+|+.+..++..
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 139 (242)
T PRK11124 67 DFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP---- 139 (242)
T ss_pred ccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh----
Confidence 2 123456799999999999999999999753 2221 1223334456888999999987666653
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. ++.+..|+
T Consensus 140 -~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~ 210 (242)
T PRK11124 140 -LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASR 210 (242)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCE
Confidence 479999999999999999999999999999999999999999999998777999999999987 44556676
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=306.04 Aligned_cols=191 Identities=29% Similarity=0.352 Sum_probs=159.4
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+. ++.+|+|+|+++++||++||+|+||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (201)
T cd03231 2 EADELTCERD-------------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP--LAGRVLLNGGPLDF 66 (201)
T ss_pred EEEEEEEEeC-------------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEeccc
Confidence 4677776652 34699999999999999999999999999999999998765 37999999987532
Q ss_pred --hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000907 742 --ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 819 (1230)
Q Consensus 742 --~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrq 819 (1230)
...++.++|++|++.+++.+|++||+.+.... . .+++++++++.+++.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~------~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 132 (201)
T cd03231 67 QRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD------H---SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQR 132 (201)
T ss_pred ccHHhhhheEEeccccccCCCcCHHHHHHhhccc------c---cHHHHHHHHHHcCChhhhcCch-----hhCCHHHHH
Confidence 23566899999999888899999999874211 1 2345788999999987766653 479999999
Q ss_pred HHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 820 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 820 rl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|++|||+|+.+|++++|||||+|||+.+++.+.+.|+++.++|+|+|+++|++.. +...+|+
T Consensus 133 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~-~~~~~~~ 194 (201)
T cd03231 133 RVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLG-LSEAGAR 194 (201)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchh-hhhccce
Confidence 9999999999999999999999999999999999999987779999999999863 3334443
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=321.32 Aligned_cols=202 Identities=26% Similarity=0.337 Sum_probs=165.6
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.++.. ....+.+|+|||++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 i~~~~v~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPN--------SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP--TEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 6789999988410 01123599999999999999999999999999999999998765 3799999998863
Q ss_pred h-------hcccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000907 741 Q-------ETFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGV 810 (1230)
Q Consensus 741 ~-------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 810 (1230)
. ...++.+|||+|++ .+++ .||.|++.|..... .....+.++++.++++.++|. +..++. +
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~ 142 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----P 142 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----c
Confidence 1 23567899999986 4454 69999999875332 234445566789999999996 344543 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+..|+
T Consensus 143 ~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dr 213 (288)
T PRK13643 143 FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADY 213 (288)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCE
Confidence 579999999999999999999999999999999999999999999998777999999999985 56667787
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=323.66 Aligned_cols=214 Identities=20% Similarity=0.212 Sum_probs=170.3
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
-++++|+++.+.............+...+|+|||++|++||++||+|+||||||||+++|+|..++ .+|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA--TDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCcEEEECCEEC
Confidence 589999998885311000000011235799999999999999999999999999999999998765 479999999886
Q ss_pred Ch------hcccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000907 740 NQ------ETFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGV 810 (1230)
Q Consensus 740 ~~------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 810 (1230)
.. ..+++.++||+|++ .++|.+||.|++.+......+ ..++++..++++++++.+++. +..++. +
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRY-----P 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCC-----c
Confidence 42 12456899999997 588899999999886543211 234555567788999999994 344444 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.+||||||||++|||||+.+|++|++||||+|||..++..+++.|+++.++ |.|+|++|||+. .+.+..|+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dr 231 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDR 231 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 579999999999999999999999999999999999999999999998764 999999999986 45556676
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=324.39 Aligned_cols=203 Identities=23% Similarity=0.324 Sum_probs=165.8
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++.. ....+.+|+|||+++++||++||+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 21 ~l~~~nl~~~y~~~--------~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p--~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEK--------QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS--KYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCEEc
Confidence 58999999988421 01124599999999999999999999999999999999998775 379999999775
Q ss_pred Ch-------------------hcccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 000907 740 NQ-------------------ETFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN 798 (1230)
Q Consensus 740 ~~-------------------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~ 798 (1230)
.. ...++.+|||+|++ .+++ .||+||+.|+.... .....+..++++++++.+++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 23467899999986 4555 59999998864321 223444456788999999996
Q ss_pred -ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHH
Q 000907 799 -PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIF 877 (1230)
Q Consensus 799 -~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~ 877 (1230)
+..++. +..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||+++ ++.
T Consensus 167 ~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 455543 3579999999999999999999999999999999999999999999998777999999999986 455
Q ss_pred HHHhc
Q 000907 878 EAFDA 882 (1230)
Q Consensus 878 ~~fd~ 882 (1230)
+..|+
T Consensus 241 ~~adr 245 (320)
T PRK13631 241 EVADE 245 (320)
T ss_pred HhCCE
Confidence 66777
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=306.45 Aligned_cols=196 Identities=22% Similarity=0.282 Sum_probs=164.3
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
-++++|+++.+. ++.+++++|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV--ESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCeeEEECCEEc
Confidence 488899987652 24699999999999999999999999999999999998765 379999999876
Q ss_pred ChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000907 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 819 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrq 819 (1230)
.....++.++|++|++.+++.+|+.||+.+....+. .. .++.++++++.+++.+..++.+ ..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---RR---AKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---Cc---HHHHHHHHHHHcCChhhccCCh-----hhCCHHHHH
Confidence 543345578999999989998999999988654321 11 2344678899999987766654 469999999
Q ss_pred HHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 820 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 820 rl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|++|||+++.+|++++|||||+|||+.+++.+.+.|++++++|+|+|++||++. ++.+..|+
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~ 206 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTR 206 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcce
Confidence 999999999999999999999999999999999999998878999999999986 44454454
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=321.23 Aligned_cols=203 Identities=22% Similarity=0.328 Sum_probs=165.9
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++.. ....+.+|+|||++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~i 71 (286)
T PRK13646 2 TIRFDNVSYTYQKG--------TPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP--TTGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEEEECCC--------CccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 47889999887411 01124699999999999999999999999999999999998765 379999999876
Q ss_pred Ch-------hcccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCC
Q 000907 740 NQ-------ETFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPG 809 (1230)
Q Consensus 740 ~~-------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~ 809 (1230)
.. ...++.+|||+|++ .+++ .||.||+.|..... .....+..++++++++.+||. +..++.
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~----- 142 (286)
T PRK13646 72 THKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS----- 142 (286)
T ss_pred ccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----
Confidence 32 23567899999986 3554 59999998864322 234444556788999999996 555554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||++||++. ++.+..|+
T Consensus 143 ~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dr 215 (286)
T PRK13646 143 PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADE 215 (286)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCE
Confidence 457999999999999999999999999999999999999999999999875 4899999999987 45667787
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=309.79 Aligned_cols=202 Identities=25% Similarity=0.389 Sum_probs=165.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~---------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQG---------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG--SSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCC---------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeeEEECCEEc
Confidence 48899999876310 0113599999999999999999999999999999999998765 379999999875
Q ss_pred Chh---c---c-cceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000907 740 NQE---T---F-TRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNG 812 (1230)
Q Consensus 740 ~~~---~---~-~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 812 (1230)
... . . ++.++|++|++.+++.+|+.||+.+....+ ........++++++++.+++.+..++.+ ..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLP-----AQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 421 1 1 357999999999999999999998765332 1223344567889999999987666553 47
Q ss_pred CCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 813 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++.. + +..|+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~ 215 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL-A-ARCDR 215 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCE
Confidence 9999999999999999999999999999999999999999999998754 8999999999873 3 33555
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=314.12 Aligned_cols=202 Identities=24% Similarity=0.281 Sum_probs=164.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14247 3 KIEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDG 69 (250)
T ss_pred eEEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECC
Confidence 367888887662 246999999999999999999999999999999999986531 2589999999
Q ss_pred eecCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc----ccccccCCC
Q 000907 737 YPKNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL----RQALVGLPG 809 (1230)
Q Consensus 737 ~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~----~~~~~~~~~ 809 (1230)
.++.. ..+++.++|++|++.+++.+||.||+.+....+.. .....+..+.++++++.+++.+. .++.
T Consensus 70 ~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~----- 143 (250)
T PRK14247 70 QDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP----- 143 (250)
T ss_pred EECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----
Confidence 87632 34567899999999888999999999886433211 11223344567889999998542 2332
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+.+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ |+|+|+++|++. ++.+..|+
T Consensus 144 ~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~ 214 (250)
T PRK14247 144 AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDY 214 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCE
Confidence 457999999999999999999999999999999999999999999999854 899999999987 45566776
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=315.06 Aligned_cols=199 Identities=24% Similarity=0.305 Sum_probs=165.1
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 65 (252)
T TIGR03005 1 VRFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI--DEGQIQVEGEQLY 65 (252)
T ss_pred CEEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 35778887663 24699999999999999999999999999999999998765 4799999998753
Q ss_pred h----------------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 000907 741 Q----------------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL 804 (1230)
Q Consensus 741 ~----------------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 804 (1230)
. ...++.++|++|++.+++..|+.||+.+..... .........+.++++++.+++.+..+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 143 (252)
T TIGR03005 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM 143 (252)
T ss_pred ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC
Confidence 1 134567999999999999999999998753211 1123344455678899999998766654
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 805 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 805 ~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||++. ++....|+
T Consensus 144 -----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~ 216 (252)
T TIGR03005 144 -----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADR 216 (252)
T ss_pred -----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCE
Confidence 3579999999999999999999999999999999999999999999998764 899999999986 45566676
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=315.01 Aligned_cols=200 Identities=23% Similarity=0.281 Sum_probs=162.2
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. ..+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 588999998763 245999999999999999999999999999999999986642 2479999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN----PLRQALVGL 807 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~ 807 (1230)
.++.. ...++.++|++|++.+++ +||+||+.+....+. .......++.++++++.+++. +..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTN--- 147 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCC---
Confidence 87531 234677999999988775 899999988653321 112333445678888888873 233433
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.+.||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++ +++|||+++|++. ++.+..|+
T Consensus 148 --~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~ 218 (254)
T PRK14273 148 --ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDR 218 (254)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCE
Confidence 45799999999999999999999999999999999999999999999985 4799999999987 45566676
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=305.52 Aligned_cols=186 Identities=30% Similarity=0.411 Sum_probs=157.6
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP--AAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEeCc
Confidence 67888887652 34699999999999999999999999999999999998764 4799999998753
Q ss_pred hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000907 741 QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 820 (1230)
Q Consensus 741 ~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr 820 (1230)
....++.++|++|++.+++.+|+.||+.+....+. .. ++.++++++.+|+.+..+... +.||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHH
Confidence 22256678999999888889999999987543321 11 234788999999987655543 4799999999
Q ss_pred HHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 821 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 821 l~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
++||++|+.+|++++|||||+|||+.+...+.+.|++++++|+|||++||++.
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 188 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL 188 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 99999999999999999999999999999999999998778999999999986
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=313.75 Aligned_cols=197 Identities=22% Similarity=0.341 Sum_probs=161.9
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA--TSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEec
Confidence 478899988763 24699999999999999999999999999999999998765 479999999875
Q ss_pred Chh----cccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCCCCCCCC
Q 000907 740 NQE----TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELV-ELNPLRQALVGLPGVNGLS 814 (1230)
Q Consensus 740 ~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~~~~~~~~~lS 814 (1230)
... ..++.++|++|+..+++.+||.||+.+..... ......+.++++++.+ ++.+..+.. .+.||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCC
Confidence 431 24567999999999999999999998754211 1122234466777777 465544443 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+..|+
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~ 206 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADR 206 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCE
Confidence 99999999999999999999999999999999999999999998877999999999986 56667776
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=319.30 Aligned_cols=200 Identities=25% Similarity=0.371 Sum_probs=166.6
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p--~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP--SSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CccEEEECCEEC
Confidence 588999998873 124699999999999999999999999999999999998765 479999999876
Q ss_pred C-----hhcccceEEEEccCCc-cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 000907 740 N-----QETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGL 813 (1230)
Q Consensus 740 ~-----~~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l 813 (1230)
. ...+++.+||++|++. .+...||+||+.+..... ..+..+..++++++++.++|.+..++. .+.|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----cccC
Confidence 3 1235678999999873 334579999998864322 223444456789999999998877765 3579
Q ss_pred CHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 814 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 814 SgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+..|+
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dr 211 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDN 211 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999998765 899999999987 35556777
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-34 Score=302.95 Aligned_cols=183 Identities=30% Similarity=0.545 Sum_probs=153.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-eEEEEEEECCee
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG-YITGNITISGYP 738 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 738 (1230)
.++|+|+++.++.. .+++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 58999999998632 23467999999999999999999999999999999999987632 358999999987
Q ss_pred cCh--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000907 739 KNQ--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 739 ~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 816 (1230)
... ...++.++|++|++.+++.+||+||+.+..... .+.. +..||||
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 643 245678999999999999999999998753210 1222 3469999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||++||+||+.+|++++|||||+|||+.+++.+.+.|++++++ +.|+|+++|+...++.+..|+
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~ 189 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDK 189 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCe
Confidence 999999999999999999999999999999999999999998765 678888887776677777776
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=307.17 Aligned_cols=195 Identities=26% Similarity=0.333 Sum_probs=159.7
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
.++|+++.+. ++. .|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~--~~G~i~~~g~~~~~ 64 (211)
T cd03298 2 RLDKIRFSYG-------------EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP--QSGRVLINGVDVTA 64 (211)
T ss_pred EEEeEEEEeC-------------CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcCc
Confidence 5677777652 122 399999999999999999999999999999998765 47999999987643
Q ss_pred -hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000907 742 -ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 820 (1230)
Q Consensus 742 -~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr 820 (1230)
...++.++|++|++.+++.+|++||+.+....+. .. .+..++.++++++.+++.+..++.+ ..||||||||
T Consensus 65 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 136 (211)
T cd03298 65 APPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQR 136 (211)
T ss_pred CCHhHccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHH
Confidence 1234679999999999999999999987532111 11 1233456789999999987766653 4799999999
Q ss_pred HHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 821 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 821 l~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++|||||+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.+..|+
T Consensus 137 v~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~ 198 (211)
T cd03298 137 VALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQR 198 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCE
Confidence 9999999999999999999999999999999999999875 4899999999986 45556676
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=312.98 Aligned_cols=204 Identities=23% Similarity=0.268 Sum_probs=160.6
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+..+.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 67 (243)
T TIGR01978 1 LKIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLL 67 (243)
T ss_pred CeEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecC
Confidence 35678877662 35699999999999999999999999999999999998411124799999998754
Q ss_pred h---hc-ccceEEEEccCCccCCCCCHHHHHHHHHHhcCCC----CCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000907 741 Q---ET-FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSS----EVNSKTREMFVEEVMELVELN-PLRQALVGLPGVN 811 (1230)
Q Consensus 741 ~---~~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~----~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 811 (1230)
. .. .+..++|++|++.+++.+|++|++.+........ .....+..++++++++.+++. +..++.++ .
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 143 (243)
T TIGR01978 68 ELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----E 143 (243)
T ss_pred CCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----c
Confidence 2 12 2334899999999999999999998764322110 012223345678899999997 34454322 2
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHH-Hhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~-fd~ 882 (1230)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... .|+
T Consensus 144 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~ 214 (243)
T TIGR01978 144 GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDY 214 (243)
T ss_pred CcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCe
Confidence 49999999999999999999999999999999999999999999999777899999999986 34344 465
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=302.48 Aligned_cols=185 Identities=24% Similarity=0.342 Sum_probs=157.3
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDYH-------------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP--EKGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEeC-------------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeeEEECCCccc
Confidence 56788887652 34699999999999999999999999999999999998765 4799999998754
Q ss_pred h--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 741 Q--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 741 ~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
. ..+++.++|++|+..+++.+||+||+.+.... . . . +..++++++.+++.+..+..+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~--~---~-~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 133 (200)
T PRK13540 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHF--S---P-G--AVGITELCRLFSLEHLIDYPC-----GLLSSGQK 133 (200)
T ss_pred cCHHHHHhheEEeccccccCcCCCHHHHHHHHHhc--C---c-c--hHHHHHHHHHcCCchhhhCCh-----hhcCHHHH
Confidence 2 34567899999998888899999999876321 1 1 1 235788999999977666543 46999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
||++|||+++.+|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|++.
T Consensus 134 ~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 188 (200)
T PRK13540 134 RQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL 188 (200)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch
Confidence 9999999999999999999999999999999999999998777999999999976
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=319.44 Aligned_cols=204 Identities=25% Similarity=0.300 Sum_probs=165.2
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+... ....+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 2 ~i~~~~l~~~~~~~--------~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPG--------TPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP--SSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCC--------CCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 36788888876310 00124699999999999999999999999999999999998775 479999999875
Q ss_pred Ch-------hcccceEEEEccCCc-cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000907 740 NQ-------ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGV 810 (1230)
Q Consensus 740 ~~-------~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 810 (1230)
.. ...++.++|++|++. .+..+||.||+.+..... ....++..++++++++.++|. +..++.+
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~----- 143 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSP----- 143 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCc-----
Confidence 32 234567999999862 233579999998764332 223444556788999999996 5666553
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||++. ++.+..|+
T Consensus 144 ~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~ 214 (287)
T PRK13641 144 FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADD 214 (287)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 479999999999999999999999999999999999999999999998777999999999986 55666777
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=326.22 Aligned_cols=190 Identities=21% Similarity=0.284 Sum_probs=162.6
Q ss_pred cCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee----cC---hh---c-ccceEEE
Q 000907 682 HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP----KN---QE---T-FTRISGY 750 (1230)
Q Consensus 682 ~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~----~~---~~---~-~~~~~~~ 750 (1230)
.++...+|+|+||++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+ +. .. . .++.++|
T Consensus 33 ~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p--~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~ 110 (382)
T TIGR03415 33 ETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV--SRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSM 110 (382)
T ss_pred hhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEecccccccCCHHHHHHHhcCCEEE
Confidence 45677899999999999999999999999999999999998775 47999999962 21 11 1 1257999
Q ss_pred EccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000907 751 CEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVAN 830 (1230)
Q Consensus 751 v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~ 830 (1230)
++|+..++|.+||+||+.++...+ .....+..++++++++.+||.+..+... .+||||||||++|||||+.+
T Consensus 111 vfQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~ 182 (382)
T TIGR03415 111 VFQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMD 182 (382)
T ss_pred EECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999875443 2344555677899999999988777664 46999999999999999999
Q ss_pred CCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 831 PSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 831 p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|+||||||||+|||+.++..+.+.|+++.++ |+|||++||++. ++.+..|+
T Consensus 183 P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~Dr 234 (382)
T TIGR03415 183 ADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNR 234 (382)
T ss_pred CCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999998764 999999999987 56677787
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=291.13 Aligned_cols=190 Identities=23% Similarity=0.345 Sum_probs=172.3
Q ss_pred ccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChhcccceEEEEccCCccCCC
Q 000907 681 VHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPY 760 (1230)
Q Consensus 681 ~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ 760 (1230)
++++++.+++|+||+++||++++++|||||||||++++|.|...+ .+|+|.++|.+.+. ..+.++||.|.+.-++|.
T Consensus 10 K~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~--~~G~I~~~g~~~~~-~~~~rIGyLPEERGLy~k 86 (300)
T COG4152 10 KSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP--TEGEITWNGGPLSQ-EIKNRIGYLPEERGLYPK 86 (300)
T ss_pred hccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCc--cCceEEEcCcchhh-hhhhhcccChhhhccCcc
Confidence 345778999999999999999999999999999999999998875 47999999998764 345679999999999999
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCC
Q 000907 761 VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 840 (1230)
Q Consensus 761 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPt 840 (1230)
+||.|.|.|.+.++ .++.++..+.++..++.+++......++ +.||.|++|++.+-.+++++|++++||||+
T Consensus 87 ~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKIQfisaviHePeLlILDEPF 158 (300)
T COG4152 87 MTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAVIHEPELLILDEPF 158 (300)
T ss_pred CcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHHHHHHHHHhcCCCEEEecCCc
Confidence 99999999999887 4566777788999999999998877764 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 841 SGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 841 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||.+.+.+-+.+.+++++|.|||+++|+-. .+-++.|+
T Consensus 159 SGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~ 199 (300)
T COG4152 159 SGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDR 199 (300)
T ss_pred cCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhh
Confidence 999999999999999999999999999999876 66788888
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=317.43 Aligned_cols=198 Identities=23% Similarity=0.298 Sum_probs=164.6
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. +++.+|+|+|++|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP--QKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEECC
Confidence 56788887662 124599999999999999999999999999999999998765 4799999998764
Q ss_pred h----hcccceEEEEccCCc-cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 741 Q----ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 741 ~----~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
. ...++.++|++|++. .++..|+.||+.+..... ........+.++++++.+++.+..++.. +.|||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCH
Confidence 2 234567999999975 356689999998765322 2234444566889999999988777653 47999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++.. + ...|+
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~-~-~~~d~ 204 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE-L-HDADR 204 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-hhCCE
Confidence 99999999999999999999999999999999999999999987779999999999873 4 45676
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=310.03 Aligned_cols=189 Identities=28% Similarity=0.368 Sum_probs=158.0
Q ss_pred CCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh--hcccceEEEEc-cCCccCC
Q 000907 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ--ETFTRISGYCE-QNDIHSP 759 (1230)
Q Consensus 683 ~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~-q~~~~~~ 759 (1230)
++.+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.++|++ |++.+++
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP--TSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred cCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 4567899999999999999999999999999999999998765 47999999986432 23456799997 5567788
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCC
Q 000907 760 YVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 839 (1230)
Q Consensus 760 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEP 839 (1230)
.+|++|++.+....+ .....+..+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+||||
T Consensus 109 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEP 180 (236)
T cd03267 109 DLPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEP 180 (236)
T ss_pred CCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 899999998865432 1233334456788999999988777664 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 840 TSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 840 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|+|||+.++..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 181 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~ 223 (236)
T cd03267 181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARR 223 (236)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCE
Confidence 9999999999999999998754 899999999986 45566676
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=315.01 Aligned_cols=200 Identities=27% Similarity=0.361 Sum_probs=165.0
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCcEEEECCEEhH
Confidence 67888887652 35699999999999999999999999999999999998664 4799999998753
Q ss_pred h---hcccceEEEEccCCccCCCCCHHHHHHHHHHh--cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 741 Q---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWL--RLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 741 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
. ...++.++|++|+..+++.+|+.||+.++... ..... ......+.++++++.+++.+..++. ++.|||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 141 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGR-LSAEDNARVNQAMEQTRINHLADRR-----LTDLSG 141 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccC-CCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCH
Confidence 2 23456799999999888889999999875211 00011 1123345678899999998776665 357999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+..|+
T Consensus 142 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~ 207 (255)
T PRK11231 142 GQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDH 207 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCE
Confidence 9999999999999999999999999999999999999999998777999999999987 56677787
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=313.93 Aligned_cols=198 Identities=25% Similarity=0.355 Sum_probs=164.1
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p--~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP--DSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEcc
Confidence 67888887663 34699999999999999999999999999999999998764 4799999998753
Q ss_pred h---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000907 741 Q---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 741 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 817 (1230)
. ..+++.++|++|++.+++.+||+||+.+..... ....+..++.++++++.+++.+..++.+ ..|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHH
Confidence 2 234567999999998888899999998754221 1122233456788999999987666654 4799999
Q ss_pred HHHHHHHHHHh------hCCCEeEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHHHhc
Q 000907 818 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAVVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 818 rqrl~ia~al~------~~p~illlDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||++||+||+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||++. ++.+..|+
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~ 210 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADR 210 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCE
Confidence 99999999999 5999999999999999999999999999987 56899999999986 45566776
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=317.69 Aligned_cols=200 Identities=27% Similarity=0.289 Sum_probs=166.9
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
-++++|+++.+.. ..+.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p--~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP--EAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 3789999987731 124599999999999999999999999999999999998775 479999999886
Q ss_pred Ch---hcccceEEEEccCCc-cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 740 NQ---ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
.. ...++.+||++|++. .++..||.||+.+..... ....++..++++++++.+||.+..++.. ..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~ 143 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSG 143 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCH
Confidence 43 234567999999973 667789999998865432 1233444567899999999988777664 47999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||++.. +. ..|+
T Consensus 144 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~~-~~d~ 209 (279)
T PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-AA-QADR 209 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-HH-cCCE
Confidence 9999999999999999999999999999999999999999999865 8999999999873 33 4676
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=313.26 Aligned_cols=199 Identities=25% Similarity=0.324 Sum_probs=161.8
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||++||+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 12 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 588899988662 346999999999999999999999999999999999986531 2579999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP----LRQALVGL 807 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 807 (1230)
.++.. ..+++.++|++|++.+++ +|++||+.+....+ .......++.++++++.+++.+ ..++.
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 151 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSP--- 151 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCC---
Confidence 87532 234567999999988887 89999998865432 1233334456788999998842 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|++. ++.+..|+
T Consensus 152 --~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~ 222 (258)
T PRK14268 152 --ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDY 222 (258)
T ss_pred --hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCE
Confidence 457999999999999999999999999999999999999999999999864 899999999986 44455666
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=306.90 Aligned_cols=192 Identities=23% Similarity=0.348 Sum_probs=161.7
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+...
T Consensus 2 ~l~~v~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~~~~~~~ 66 (223)
T TIGR03740 2 ETKNLSKRFG-------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP--TSGEIIFDGHPWTR 66 (223)
T ss_pred EEEeEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEeccc
Confidence 4677776552 35699999999999999999999999999999999998764 47999999987643
Q ss_pred hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH
Q 000907 742 ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRL 821 (1230)
Q Consensus 742 ~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl 821 (1230)
.. .+.++|++|++.+++.+|++||+.+....+. .. ++.+.++++.+++.+..+..+ ..||||||||+
T Consensus 67 ~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv 133 (223)
T TIGR03740 67 KD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRL 133 (223)
T ss_pred cc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHH
Confidence 22 3578999999999999999999987654321 11 234688899999987766653 46999999999
Q ss_pred HHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 822 TIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 822 ~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+||||++.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+..|+
T Consensus 134 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~ 193 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADH 193 (223)
T ss_pred HHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCE
Confidence 9999999999999999999999999999999999998777999999999987 45566676
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=313.29 Aligned_cols=202 Identities=23% Similarity=0.255 Sum_probs=164.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 478889988763 246999999999999999999999999999999999987642 2479999999
Q ss_pred eecC-----hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000907 737 YPKN-----QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP----LRQALVGL 807 (1230)
Q Consensus 737 ~~~~-----~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 807 (1230)
.++. ...+++.++|++|++.+++.+||.||+.+....+.. ....+...+.++++++.+++.+ ..++.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 146 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDY--- 146 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccC---
Confidence 8763 123456799999999999999999999886543211 1123334456788899998753 22322
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~ 217 (253)
T PRK14267 147 --PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDY 217 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCE
Confidence 457999999999999999999999999999999999999999999999865 699999999987 45566776
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=314.07 Aligned_cols=202 Identities=22% Similarity=0.237 Sum_probs=164.7
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP--TGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CcceEEECCEEC
Confidence 478889988762 35699999999999999999999999999999999998765 479999999876
Q ss_pred Chh---c-ccceEEEEccCCccCCCCCHHHHHHHHHHhcCC----------C--CCCHHHHHHHHHHHHHHcCCCccccc
Q 000907 740 NQE---T-FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS----------S--EVNSKTREMFVEEVMELVELNPLRQA 803 (1230)
Q Consensus 740 ~~~---~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~----------~--~~~~~~~~~~~~~~l~~l~l~~~~~~ 803 (1230)
... . .+..++|++|++.+++.+||+||+.+....... . .....+..+.++++++.+|+.+..++
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 421 1 234589999999999999999999886431110 0 00111233567888999999876666
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 804 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 804 ~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.+ +.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+..|+
T Consensus 150 ~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 QA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 53 479999999999999999999999999999999999999999999998765 899999999987 55566676
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=311.30 Aligned_cols=200 Identities=25% Similarity=0.308 Sum_probs=163.9
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP--DEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCeecC
Confidence 56788887652 34699999999999999999999999999999999998765 3799999998754
Q ss_pred hh----cccceEEEEccCCccCCCCCHHHHHHHHHHhcCC--C---CCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 741 QE----TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS--S---EVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 741 ~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~--~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
.. ..++.++|++|++.+++.+||+||+.+....... . ....+..+++++++++.+++.+..++.+ +
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----G 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----h
Confidence 21 1245699999999999999999999886432100 0 0112334456889999999987766653 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+..|+
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~ 211 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADK 211 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCE
Confidence 7999999999999999999999999999999999999999999999865 799999999986 46666776
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=315.69 Aligned_cols=199 Identities=24% Similarity=0.346 Sum_probs=165.4
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.++ +++.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYS------------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP--TSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeC------------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 67888888763 123599999999999999999999999999999999998765 4799999998754
Q ss_pred h---hcccceEEEEccCCc-cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000907 741 Q---ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 741 ~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 816 (1230)
. ...++.++|++|++. .+...||.||+.+..... ........++++++++.+++.+..++.+ +.||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHH
Confidence 2 244567899999963 334679999998764322 2334444566889999999987777653 479999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+..|+
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~dr 207 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADY 207 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999998765 899999999987 56667777
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=307.12 Aligned_cols=197 Identities=26% Similarity=0.386 Sum_probs=165.7
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
.++|+++.+. .+.+++|+|+++++||+++|+||||||||||+++|+|..++ ..|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~ 66 (232)
T cd03300 2 ELENVSKFYG-------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDITN 66 (232)
T ss_pred EEEeEEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCc
Confidence 5677777652 34699999999999999999999999999999999998775 37999999987643
Q ss_pred h-cccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000907 742 E-TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 820 (1230)
Q Consensus 742 ~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr 820 (1230)
. ..++.++|++|++.+++.+|+.||+.+....+. .......+.++++++.+++.+..++.. ..||+|||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (232)
T cd03300 67 LPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQR 138 (232)
T ss_pred CChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHH
Confidence 1 235679999999999989999999988654331 223334556788999999987777653 5799999999
Q ss_pred HHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 821 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 821 l~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~ 200 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDR 200 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCE
Confidence 99999999999999999999999999999999999998764 899999999986 46677777
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=311.41 Aligned_cols=205 Identities=22% Similarity=0.292 Sum_probs=162.5
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--C-CeEEEEEEEC
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--R-GYITGNITIS 735 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~--~-~~~~G~i~~~ 735 (1230)
..++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|... + .+.+|+|.++
T Consensus 5 ~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 71 (253)
T PRK14242 5 PKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLD 71 (253)
T ss_pred cEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEEC
Confidence 3589999998773 2469999999999999999999999999999999999742 1 1247999999
Q ss_pred CeecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000907 736 GYPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGV 810 (1230)
Q Consensus 736 g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 810 (1230)
|.++.. ...++.++|++|++.+++ .||+||+.+....+. ....+...++++++++.+++.+....... ..+
T Consensus 72 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~ 147 (253)
T PRK14242 72 GENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRLH-ESA 147 (253)
T ss_pred CEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCc
Confidence 987632 234568999999988887 599999988654321 11223334567888999998542211111 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||++||++. ++.+..|+
T Consensus 148 ~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~-~~~~~~d~ 217 (253)
T PRK14242 148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQ-QAARVSDV 217 (253)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHH-HHHHhCCE
Confidence 5799999999999999999999999999999999999999999999985 4799999999986 45566676
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=312.07 Aligned_cols=201 Identities=21% Similarity=0.275 Sum_probs=163.6
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 377889988763 246999999999999999999999999999999999986532 2489999999
Q ss_pred eecC-----hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000907 737 YPKN-----QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP----LRQALVGL 807 (1230)
Q Consensus 737 ~~~~-----~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 807 (1230)
.++. ....++.++|++|++.+++.+||+||+.+....+. .......++.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP--- 145 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 8753 12345679999999999999999999988654321 1123344556788899998842 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+.+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++ +++|||+++|++. ++.+..|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tviivsH~~~-~~~~~~d~ 216 (258)
T PRK14241 146 --GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-QDYTIVIVTHNMQ-QAARVSDQ 216 (258)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhCCE
Confidence 45799999999999999999999999999999999999999999999985 4689999999986 45566676
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=315.44 Aligned_cols=200 Identities=24% Similarity=0.309 Sum_probs=165.6
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+.. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP--QSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEec
Confidence 5889999887631 234699999999999999999999999999999999998765 479999999886
Q ss_pred Ch---hcccceEEEEccCCc-cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 740 NQ---ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
.. ..+++.++|++|++. .++.+||+||+.+..... .....+..+.++++++.+++.+..++.. +.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCH
Confidence 42 235678999999974 567789999998864322 1233344556889999999987777653 47999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ ++|||+++|++.. + ...|+
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~ 211 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADK 211 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCE
Confidence 9999999999999999999999999999999999999999998766 5999999999874 3 34565
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=315.87 Aligned_cols=198 Identities=26% Similarity=0.364 Sum_probs=162.4
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP--QKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CccEEEECCEEcc
Confidence 56788887662 24699999999999999999999999999999999998765 4799999998763
Q ss_pred h-----hcccceEEEEccCCcc-CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000907 741 Q-----ETFTRISGYCEQNDIH-SPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 814 (1230)
Q Consensus 741 ~-----~~~~~~~~~v~q~~~~-~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 814 (1230)
. ...++.++|++|++.. +...|+.||+.+..... .....+..+.++++++.+++.+..++. +..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCC
Confidence 1 1345679999998753 34568999998764332 123333445678899999998776665 34799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~ 205 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDA 205 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999998777999999999986 45566776
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=314.68 Aligned_cols=202 Identities=28% Similarity=0.379 Sum_probs=165.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP--SEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEeh
Confidence 488999988763 24699999999999999999999999999999999998764 479999999875
Q ss_pred C---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 740 N---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS-SEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
. ...+++.++|++|+..+++.+|+.||+.+....... .........++++++++.+++.+..++.+ +.|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCH
Confidence 3 233456799999998888899999999875321100 00111223456788999999987666654 47999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+..|+
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~ 217 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDY 217 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999998765 899999999987 55566776
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=324.29 Aligned_cols=197 Identities=27% Similarity=0.400 Sum_probs=162.9
Q ss_pred CCceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECC
Q 000907 657 EPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG 736 (1230)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g 736 (1230)
.+..++|+|+++++. +++++|+++||+|++||.+||+|+|||||||++|+|.+... .+|+|.+||
T Consensus 348 ~~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG 412 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDG 412 (591)
T ss_pred CCCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECC
Confidence 344699999999884 23469999999999999999999999999999999999765 379999999
Q ss_pred eecC---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccc
Q 000907 737 YPKN---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVG 806 (1230)
Q Consensus 737 ~~~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~ 806 (1230)
.+++ .+..|+.+||||||..+|. -||.+|+.|+. ...+ +++|-++.+..++.+ -.+|.+|
T Consensus 413 ~dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn-----~sas----~eeV~e~~k~a~~hd~i~~l~~GY~T~VG 482 (591)
T KOG0057|consen 413 QDIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGN-----PSAS----DEEVVEACKRAGLHDVISRLPDGYQTLVG 482 (591)
T ss_pred eeHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCC-----CCcC----HHHHHHHHHHcCcHHHHHhccccchhhHh
Confidence 9864 3567899999999988875 59999999862 1222 233555556655543 3456677
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 807 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 807 ~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+.+ ..|||||||||+||||+++||+|+++|||||.||+++..++++.+++. ..|+|+|++.|+.+ ....||+
T Consensus 483 erG-~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l~--ll~~~Dk 554 (591)
T KOG0057|consen 483 ERG-LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRLD--LLKDFDK 554 (591)
T ss_pred hcc-cccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecch--hHhcCCE
Confidence 654 359999999999999999999999999999999999999999999884 46999999999875 5577887
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=304.05 Aligned_cols=195 Identities=23% Similarity=0.302 Sum_probs=160.5
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+. .+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~---------------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 64 (213)
T TIGR01277 2 ALDKVRYEYE---------------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVNDQSHTG 64 (213)
T ss_pred eEEeeeEEeC---------------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEccc
Confidence 5677777652 146799999999999999999999999999999998765 37999999987642
Q ss_pred -hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000907 742 -ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 820 (1230)
Q Consensus 742 -~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr 820 (1230)
...++.++|++|++.+++.+|+.||+.+...... . .....+++++++++.+++.+..++. ++.||||||||
T Consensus 65 ~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 136 (213)
T TIGR01277 65 LAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRL-----PEQLSGGQRQR 136 (213)
T ss_pred CChhccceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCC-----cccCCHHHHHH
Confidence 2345679999999999999999999987532211 1 1122345678899999998776665 34799999999
Q ss_pred HHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 821 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 821 l~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+..|+
T Consensus 137 l~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~ 198 (213)
T TIGR01277 137 VALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQ 198 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCe
Confidence 99999999999999999999999999999999999998754 899999999986 44556676
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=316.15 Aligned_cols=203 Identities=25% Similarity=0.321 Sum_probs=162.7
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+... ....+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~--------~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i 71 (280)
T PRK13649 2 GINLQNVSYTYQAG--------TPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRVDDTLI 71 (280)
T ss_pred eEEEEEEEEEcCCC--------CccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEc
Confidence 36788998877310 00113599999999999999999999999999999999998765 479999999875
Q ss_pred Ch-------hcccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCC
Q 000907 740 NQ-------ETFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQALVGLPG 809 (1230)
Q Consensus 740 ~~-------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~ 809 (1230)
.. ...++.++|++|++ .+++ .||+||+.+..... ....++..+.++++++.+++.+ ..+..
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 142 (280)
T PRK13649 72 TSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKN----- 142 (280)
T ss_pred cccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----
Confidence 32 23456799999986 3444 69999998764322 1233344456788999999963 44544
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++.||||||||++||+||+.+|++|+|||||+|||+.+++.+.+.|++++++|+|||++||++. ++.+..|+
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~ 214 (280)
T PRK13649 143 PFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADF 214 (280)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCE
Confidence 3579999999999999999999999999999999999999999999998777999999999986 45566676
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=304.26 Aligned_cols=202 Identities=22% Similarity=0.336 Sum_probs=166.8
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+.. ..+.+.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~---------~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGH---------GSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV--QEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccC---------CCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEhH
Confidence 578888887631 01236799999999999999999999999999999999998764 4799999998763
Q ss_pred h------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000907 741 Q------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 814 (1230)
Q Consensus 741 ~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 814 (1230)
. ...++.++|++|++.+++.+|+.||+.+...... ....++..+.++++++.+++.+..++.. +.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCC
Confidence 2 1345789999999999999999999998654321 1233444567889999999987666653 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ .|+|+|+++|++. +.+..|+
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~ 210 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADR 210 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCE
Confidence 9999999999999999999999999999999999999999999876 4899999999985 3456665
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=311.96 Aligned_cols=203 Identities=20% Similarity=0.270 Sum_probs=163.8
Q ss_pred CCceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--C-CeEEEEEE
Q 000907 657 EPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--R-GYITGNIT 733 (1230)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~--~-~~~~G~i~ 733 (1230)
++..++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ + .+.+|+|.
T Consensus 10 ~~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~ 76 (260)
T PRK10744 10 APSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEIL 76 (260)
T ss_pred CCceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEE
Confidence 344688999998763 2369999999999999999999999999999999999864 1 12479999
Q ss_pred ECCeecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccc
Q 000907 734 ISGYPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP----LRQAL 804 (1230)
Q Consensus 734 ~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~ 804 (1230)
++|.+... ...++.++|++|++.+++ .|++||+.+....+. .......+++++++++.+++.+ ..+..
T Consensus 77 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 153 (260)
T PRK10744 77 LDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQS 153 (260)
T ss_pred ECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcC
Confidence 99987631 234678999999988887 899999987643221 1233344456888999999843 22332
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 805 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 805 ~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
...||||||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++ +++|||++||++. ++.+..|+
T Consensus 154 -----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~ 224 (260)
T PRK10744 154 -----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDY 224 (260)
T ss_pred -----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCE
Confidence 45799999999999999999999999999999999999999999999985 4789999999986 45566676
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=314.00 Aligned_cols=204 Identities=25% Similarity=0.322 Sum_probs=165.2
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCe-EEEEEEECCee
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY-ITGNITISGYP 738 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~-~~G~i~~~g~~ 738 (1230)
-++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++.. .+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 478888887762 3569999999999999999999999999999999999876531 36999999987
Q ss_pred cCh--------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCC-----CCCHHHHHHHHHHHHHHcCCCccccccc
Q 000907 739 KNQ--------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSS-----EVNSKTREMFVEEVMELVELNPLRQALV 805 (1230)
Q Consensus 739 ~~~--------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~-----~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 805 (1230)
... ...++.++|++|++.+++.+||.||+.+......+. ........++++++++.+++.+..++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 532 123567899999999999999999998753210000 0112233456889999999987666653
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 806 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 806 ~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++. .+.+..|+
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~ 222 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCER 222 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 46999999999999999999999999999999999999999999999875 4899999999986 34555666
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=297.46 Aligned_cols=176 Identities=57% Similarity=0.920 Sum_probs=149.9
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++.. .+++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 47889999887421 012569999999999999999999999999999999999753223579999999886
Q ss_pred ChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000907 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 819 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrq 819 (1230)
. ...++.++|++|++.+++.+|++||+.+...+ + .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHhH
Confidence 5 34567899999999999999999999874210 0 49999999
Q ss_pred HHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 820 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 820 rl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++..++.+..|+
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~ 178 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDR 178 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCE
Confidence 999999999999999999999999999999999999998777999999999998556677776
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=312.28 Aligned_cols=208 Identities=23% Similarity=0.300 Sum_probs=164.9
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+......+ ..+++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP--AQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcc
Confidence 67889988774210000 01235799999999999999999999999999999999998765 4799999998754
Q ss_pred hh------cccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000907 741 QE------TFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGVN 811 (1230)
Q Consensus 741 ~~------~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 811 (1230)
.. ..++.++|++|++ .+.+.+||+||+.+..... .........++++++++.+++. +..+.. ++
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKL-----PR 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCC-----hh
Confidence 21 2356799999996 4667899999997754321 1122333455688999999995 555554 34
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+..|+
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~ 220 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQR 220 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcE
Confidence 79999999999999999999999999999999999999999999998765 899999999986 45556676
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=309.72 Aligned_cols=204 Identities=22% Similarity=0.302 Sum_probs=161.6
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC---CCCeEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRK---TRGYITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~---~~~~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 477888887762 346999999999999999999999999999999999952 2212479999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
.+... ...++.++|++|++.+++ .|+.||+.+....+. .......++.++++++.+++.+..+.... ..++
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 145 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLK-ESAF 145 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhh-CCcc
Confidence 87642 234567999999988887 699999987654331 11222334567889999998642211111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|++. ++.+..|+
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~ 214 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDK 214 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCE
Confidence 799999999999999999999999999999999999999999999985 5899999999987 45677787
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=277.99 Aligned_cols=187 Identities=24% Similarity=0.314 Sum_probs=158.2
Q ss_pred cccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC-------------h---
Q 000907 678 RRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN-------------Q--- 741 (1230)
Q Consensus 678 ~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~-------------~--- 741 (1230)
++.++++...+|++||++.+.|+++.|+|.|||||||+|+||.-+.+| ..|.|.+||..+. .
T Consensus 11 dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P--~~G~I~v~geei~~k~~~~G~l~~ad~~q~ 88 (256)
T COG4598 11 DLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP--SAGSIRVNGEEIRLKRDKDGQLKPADKRQL 88 (256)
T ss_pred HHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCC--CCceEEECCeEEEeeeCCCCCeeeCCHHHH
Confidence 334456788999999999999999999999999999999999977665 4799999997531 1
Q ss_pred hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH
Q 000907 742 ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRL 821 (1230)
Q Consensus 742 ~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl 821 (1230)
...|...|+|+|..++++.+||.||+.-+.. +. -..++.+..++++..++..|+.+.+|.+ +..|||||+||+
T Consensus 89 ~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPv-hV-Lg~~k~ea~e~Ae~~L~kVGi~ek~~~Y-----P~~LSGGQQQR~ 161 (256)
T COG4598 89 QRLRTRLGMVFQHFNLWSHMTVLENVIEAPV-HV-LGVSKAEAIERAEKYLAKVGIAEKADAY-----PAHLSGGQQQRV 161 (256)
T ss_pred HHHHHHhhHhhhhcchhHHHHHHHHHHhcch-Hh-hcCCHHHHHHHHHHHHHHhCchhhhhcC-----ccccCchHHHHH
Confidence 1234467999999999999999999875421 11 1345666677889999999999888765 347999999999
Q ss_pred HHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 822 TIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 822 ~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
+|||||+.+|+++++|||||+|||+-.-++++.+++++++|+|.+++||.-.
T Consensus 162 aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~ 213 (256)
T COG4598 162 AIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG 213 (256)
T ss_pred HHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh
Confidence 9999999999999999999999999999999999999999999999999643
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=314.45 Aligned_cols=202 Identities=23% Similarity=0.289 Sum_probs=166.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.+.++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 7 ~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 71 (265)
T PRK10253 7 RLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHI 71 (265)
T ss_pred EEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEEh
Confidence 688899998763 34699999999999999999999999999999999998765 379999999875
Q ss_pred Ch---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS-SEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
.. ...++.++|++|++.+++.+|++||+.+......+ .....+...+.++++++.+++.+..++. ++.|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 146 (265)
T PRK10253 72 QHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----VDTLSG 146 (265)
T ss_pred hhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCCh
Confidence 32 23456799999999998899999999864211100 0001123345678899999998766665 357999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |.|||+++|++. ++.+..|+
T Consensus 147 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~ 213 (265)
T PRK10253 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASH 213 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999998764 899999999987 56777787
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=313.91 Aligned_cols=199 Identities=28% Similarity=0.346 Sum_probs=164.3
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP--TSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEECc
Confidence 56788888763 124599999999999999999999999999999999998765 3799999998763
Q ss_pred h-----hcccceEEEEccCCc-cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000907 741 Q-----ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 814 (1230)
Q Consensus 741 ~-----~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 814 (1230)
. ...++.++|++|++. .+...||.||+.+..... .....+..+++.++++.+++.+..++.+ +.||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCC
Confidence 1 124567999999963 334579999998764321 2234444566889999999988777664 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~ 206 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADK 206 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999998777999999999976 45566776
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=308.22 Aligned_cols=195 Identities=26% Similarity=0.301 Sum_probs=158.2
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 65 (230)
T TIGR03410 1 LEVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV--KSGSIRLDGEDIT 65 (230)
T ss_pred CEEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECC
Confidence 35677777652 34699999999999999999999999999999999998765 4799999998754
Q ss_pred hh----cccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCCCCCCCCH
Q 000907 741 QE----TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE-LNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 741 ~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~~~~~~~~~lSg 815 (1230)
.. ..++.++|++|++.+++.+|+.||+.+....+. .. ..+..+++++.++ +.+..++. ++.|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~ 134 (230)
T TIGR03410 66 KLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSG 134 (230)
T ss_pred CCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCH
Confidence 21 134579999999999999999999988654321 11 1233566777776 45544544 357999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||++. ++.+..|+
T Consensus 135 G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~ 201 (230)
T TIGR03410 135 GQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADR 201 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999998764 899999999986 45556676
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=326.63 Aligned_cols=191 Identities=24% Similarity=0.442 Sum_probs=161.1
Q ss_pred CCceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECC
Q 000907 657 EPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG 736 (1230)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g 736 (1230)
+++.++.+|+++.++ +++++++|+|+++++|+.+||+|+||||||||+++|+|..++ .+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~------------~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYP------------DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecC------------CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECC
Confidence 466777889999875 233799999999999999999999999999999999999875 479999999
Q ss_pred eec---ChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc------cccccC
Q 000907 737 YPK---NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR------QALVGL 807 (1230)
Q Consensus 737 ~~~---~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~------~~~~~~ 807 (1230)
.+. +...+++.++||+|++.+++ -|++||+.++. .+.+ ++.+.++++..++.+.. |+.+|+
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~-----~~~s----~e~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR-----PDAS----DEEIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC-----CcCC----HHHHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 875 44678999999999998886 59999998752 1122 34466777777765443 555665
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
. .++|||||+|||++||||+.+++++++||||++||.++++.|.+.|.++++ ++|++++||++.
T Consensus 453 ~-G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~ 516 (559)
T COG4988 453 G-GAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE 516 (559)
T ss_pred C-CCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH
Confidence 4 468999999999999999999999999999999999999999999999875 599999999986
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=296.40 Aligned_cols=177 Identities=49% Similarity=0.844 Sum_probs=152.2
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC--CCCeEEEEEEECCe
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRK--TRGYITGNITISGY 737 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~--~~~~~~G~i~~~g~ 737 (1230)
.++++|+++.++... +..++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++ .+|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~--~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG--VSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC--CceEEEECCE
Confidence 578999998874210 001246999999999999999999999999999999999987 54 4799999999
Q ss_pred ecChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000907 738 PKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 738 ~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 817 (1230)
+......++.++|++|++.+++.+|++||+.+..... .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 8764455678999999999999999999997642100 399999
Q ss_pred HHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 818 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 818 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||++|||||+.+|++++|||||+|||+.+++.+.+.|+++.++|+|+|+++|++..++.+..|+
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~ 181 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDK 181 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCE
Confidence 99999999999999999999999999999999999999998777999999999998777777887
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=310.57 Aligned_cols=207 Identities=24% Similarity=0.290 Sum_probs=165.8
Q ss_pred CCceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEE
Q 000907 657 EPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNIT 733 (1230)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~ 733 (1230)
.+..++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++. +.+|+|.
T Consensus 17 ~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 83 (267)
T PRK14237 17 EEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL 83 (267)
T ss_pred CCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEE
Confidence 344689999998763 246999999999999999999999999999999999986531 3579999
Q ss_pred ECCeecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000907 734 ISGYPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLP 808 (1230)
Q Consensus 734 ~~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 808 (1230)
++|.+... ...++.++|++|++.+++ .||+||+.+..... ........+++++++++.+++.+..+.... .
T Consensus 84 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~-~ 159 (267)
T PRK14237 84 YRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLH-K 159 (267)
T ss_pred ECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhc-C
Confidence 99987632 234667999999988887 69999998864321 112333445667888999998542222222 2
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||++||++. ++.+..|+
T Consensus 160 ~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~ 231 (267)
T PRK14237 160 SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDY 231 (267)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCE
Confidence 246799999999999999999999999999999999999999999999985 4799999999987 56677787
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=311.56 Aligned_cols=201 Identities=28% Similarity=0.391 Sum_probs=164.1
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP--DAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEEcc
Confidence 56778887652 35699999999999999999999999999999999998765 3799999998753
Q ss_pred h---hcccceEEEEccCCccCCCCCHHHHHHHHHH-hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000907 741 Q---ETFTRISGYCEQNDIHSPYVTVYESLLYSAW-LRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 741 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 816 (1230)
. ...++.++|++|++.+++.+||.||+.+... .+........+..++++++++.+++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHH
Confidence 2 2334578999999877888999999987521 100000111223456788999999987666653 479999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++|.|||+++|++. .+.+..|+
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~ 206 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDH 206 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999998777899999999987 56677777
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=310.75 Aligned_cols=205 Identities=23% Similarity=0.268 Sum_probs=162.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|++|++||+++|+|||||||||||++|+|..++. +.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 688999998763 246999999999999999999999999999999999976531 2579999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
.++.. ..+++.++|++|++.+++. ||.||+.+....+.. ........++++++++.+++.+....... ..++
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 162 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLH-EPGT 162 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhh-CCcc
Confidence 87632 2345679999999888874 999999886543311 11223334567889999998642111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+..|+
T Consensus 163 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~ 231 (267)
T PRK14235 163 GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQR 231 (267)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCE
Confidence 7999999999999999999999999999999999999999999999865 789999999986 44455676
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=305.76 Aligned_cols=197 Identities=28% Similarity=0.396 Sum_probs=164.6
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~i~g~~~~~ 66 (237)
T TIGR00968 2 EIANISKRFG-------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP--DSGRIRLNGQDATR 66 (237)
T ss_pred EEEEEEEEEC-------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCc
Confidence 5677777653 34699999999999999999999999999999999998764 47999999987643
Q ss_pred h-cccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000907 742 E-TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 820 (1230)
Q Consensus 742 ~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr 820 (1230)
. ..++.++|++|++.+++.+|+.||+.+....+ ........+.++++++.+++.+..++.. +.||+|||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (237)
T TIGR00968 67 VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQR 138 (237)
T ss_pred CChhhcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHH
Confidence 2 23567999999999999999999998765432 1223334456788999999987666653 4699999999
Q ss_pred HHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 821 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 821 l~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+..|+
T Consensus 139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~ 200 (237)
T TIGR00968 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADR 200 (237)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCE
Confidence 99999999999999999999999999999999999998765 899999999986 45566676
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=347.83 Aligned_cols=201 Identities=28% Similarity=0.430 Sum_probs=164.2
Q ss_pred CCCCceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEE
Q 000907 655 PFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITI 734 (1230)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~ 734 (1230)
|.-...++++|++|+|.. ++..+|+|+|++|+|||.+||+|+||||||||+|+|+|++.| .+|+|.+
T Consensus 466 ~~~~g~I~~~nvsf~y~~-----------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p--~~G~I~~ 532 (709)
T COG2274 466 PKLQGEIEFENVSFRYGP-----------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP--QQGRILL 532 (709)
T ss_pred cccCceEEEEEEEEEeCC-----------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEE
Confidence 344558999999999853 234699999999999999999999999999999999999876 4799999
Q ss_pred CCeecC---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccccc
Q 000907 735 SGYPKN---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE-------LNPLRQAL 804 (1230)
Q Consensus 735 ~g~~~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~ 804 (1230)
||.+.+ ...+|+.+|||+||+.++. -|++||+.++. +..+.+ .+.+.++..| +..-.|+.
T Consensus 533 dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~-----p~~~~e----~i~~A~~~ag~~~fI~~lP~gy~t~ 602 (709)
T COG2274 533 DGVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGN-----PEATDE----EIIEAAQLAGAHEFIENLPMGYDTP 602 (709)
T ss_pred CCEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCC-----CCCCHH----HHHHHHHHhCcHHHHHhcccccccc
Confidence 999864 4578999999999998875 69999998752 122211 1222333322 33445677
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 805 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 805 ~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+|+.+ .+||||||||++|||||+++|+||+||||||+||+.+++.|.+.|.++. +|+|+|+++|+++ .....|+
T Consensus 603 v~E~G-~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adr 676 (709)
T COG2274 603 VGEGG-ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADR 676 (709)
T ss_pred cccCC-CCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccE
Confidence 77654 4799999999999999999999999999999999999999999999875 6899999999987 5567777
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=316.72 Aligned_cols=209 Identities=19% Similarity=0.227 Sum_probs=166.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC-C-eEEEEEEECCe
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR-G-YITGNITISGY 737 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~-~-~~~G~i~~~g~ 737 (1230)
.++++|+++.+... .+...+|+||||+|++||++||+|+||||||||+++|+|..++ + ..+|+|.++|.
T Consensus 3 ~L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~ 73 (326)
T PRK11022 3 LLNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQ 73 (326)
T ss_pred eEEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCE
Confidence 37889999887421 1225699999999999999999999999999999999998653 2 24799999998
Q ss_pred ecCh---hc----ccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000907 738 PKNQ---ET----FTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLP 808 (1230)
Q Consensus 738 ~~~~---~~----~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 808 (1230)
++.. .. +++.++||+|++ .+.|.+|+.+++........ ....++..+++.++++.+||.+..+.. +.
T Consensus 74 ~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l--~~ 149 (326)
T PRK11022 74 DLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRL--DV 149 (326)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHH--hC
Confidence 8632 11 224699999998 47899999998876543321 224455567789999999997532211 11
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.+++||||||||++|||||+.+|++|++||||+|||+.++..+++.|+++++ .|.|+|++||+.+ .+.+..|+
T Consensus 150 ~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adr 223 (326)
T PRK11022 150 YPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHK 223 (326)
T ss_pred CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 2457999999999999999999999999999999999999999999999976 4999999999987 45566777
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=281.84 Aligned_cols=200 Identities=27% Similarity=0.399 Sum_probs=165.4
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
|+.+|++|++. ++.+|++||++++|||++||+||||||||||||.|+|...++ +|++.+||.+.+
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~--~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC--CCeEeeCCcChh
Confidence 56788888763 467999999999999999999999999999999999987653 799999999865
Q ss_pred h---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000907 741 Q---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 741 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 817 (1230)
. ....+..+.+||+..+-...||+|-+.++..-... .....+..+.++++++..++.+.+.+.. ..|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchH
Confidence 3 34556778999998887778999999987432211 1122244556788999999998887653 4799999
Q ss_pred HHHHHHHHHHhh------CCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 818 RKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 818 rqrl~ia~al~~------~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||.+||.|+. ++++||||||||+||...++.++++.|+++++|..|+++.||.+.. -...|+
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLA-A~YaDr 210 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLA-AQYADR 210 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHH-HHhhhe
Confidence 999999999985 4569999999999999999999999999999999999999999843 244566
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=306.13 Aligned_cols=183 Identities=25% Similarity=0.352 Sum_probs=153.1
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChhcccceEEEEccCCccCCCCCHHHHHH
Q 000907 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLL 768 (1230)
Q Consensus 689 L~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~ 768 (1230)
|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..... ...+|++|++.+++.+||.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP--TSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 5799999999999999999999999999999998765 4799999998764321 12489999999999999999998
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHH
Q 000907 769 YSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 848 (1230)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~ 848 (1230)
+......+ .....+..+.++++++.+++.+..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 76321111 2233344556788999999987666653 47999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 849 AVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 849 ~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
..+.+.|++++++ |+|||++||++. ++.+..|+
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~ 184 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDR 184 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 9999999998764 899999999987 56667787
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-33 Score=315.95 Aligned_cols=210 Identities=23% Similarity=0.254 Sum_probs=169.1
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
-++++|+++.+...... . ...+.+.+|+|||++|++||++||+|+||||||||+++|+|..++ .+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~--~-~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGL--F-KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCc--c-ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEc
Confidence 48899999887531100 0 001235799999999999999999999999999999999998765 479999999886
Q ss_pred Ch------hcccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCC
Q 000907 740 NQ------ETFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQALVGLPGV 810 (1230)
Q Consensus 740 ~~------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~ 810 (1230)
.. ..+++.++||+|++ .+.|.+|+.+++....... ......+..+++.++++.+||.+ ..++. +
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYDRY-----P 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhcCC-----C
Confidence 32 13456799999997 5889999999997754332 12344555677899999999963 44544 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++||||||||++|||||+.+|++|++||||+|||..++..++++|+++.++ |.|+|++||+.+ .+....|+
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adr 224 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADE 224 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 579999999999999999999999999999999999999999999998764 999999999986 44556676
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=311.14 Aligned_cols=199 Identities=23% Similarity=0.295 Sum_probs=161.0
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEEC
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITIS 735 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~ 735 (1230)
..++++|+++.+. ++.+|+|+||+|++||+++|+|||||||||||++|+|..++. +.+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3588999998763 246999999999999999999999999999999999985421 247999999
Q ss_pred CeecC-----hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccc
Q 000907 736 GYPKN-----QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP----LRQALVG 806 (1230)
Q Consensus 736 g~~~~-----~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 806 (1230)
|.++. ...+++.++|++|++.+++ .||+||+.+....+. ... ..++.++++++.+++.. ..+..
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~-- 151 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YTG-DMDELVERSLRKAAVWDECKDKLNES-- 151 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---CcH-HHHHHHHHHHHHhCCcchhhhhhCCC--
Confidence 98753 2234567999999998887 499999988654321 111 23345677888887742 22322
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 807 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 807 ~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++ +++|||++||++. ++.+..|+
T Consensus 152 ---~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~ 222 (269)
T PRK14259 152 ---GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-KNFTIVIVTHNMQ-QAVRVSDM 222 (269)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhcCE
Confidence 45799999999999999999999999999999999999999999999985 4799999999986 56677777
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=316.01 Aligned_cols=209 Identities=21% Similarity=0.294 Sum_probs=168.9
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-eEEEEEEECCee
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG-YITGNITISGYP 738 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 738 (1230)
-++++|+++.+... .+...+|+||||+|++||++||+|+||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 58899999887421 12357999999999999999999999999999999999987642 137999999998
Q ss_pred cCh---hc---c-cceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000907 739 KNQ---ET---F-TRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPG 809 (1230)
Q Consensus 739 ~~~---~~---~-~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 809 (1230)
+.. .. + ++.++||+|++ .+.|.+|+.+++........ .....+..+++.++++.++|.+..+.. + ..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~-~-~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRM-K-MY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHh-c-CC
Confidence 632 11 2 24799999998 68899999999977644322 234445556788899999997543221 1 23
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+++||||||||++||+||+.+|++|++||||+|||+.++..+++.|+++.++ |.|+|++|||+. .+.+..|+
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dr 231 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDK 231 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCE
Confidence 5689999999999999999999999999999999999999999999999765 899999999987 45566787
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=307.62 Aligned_cols=204 Identities=22% Similarity=0.279 Sum_probs=160.3
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC-CeEEEEEEECCeec
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR-GYITGNITISGYPK 739 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~ 739 (1230)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|.++
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 56778887763 34699999999999999999999999999999999997542 23579999999876
Q ss_pred Ch---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000907 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 816 (1230)
.. ...++.++|++|++.+++ .|++||+.+....+... ......+++++++++.+++.+...... +...+.||||
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 146 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMI-KNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGG 146 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcc-cChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHH
Confidence 42 234667999999998887 69999998865432110 112333456788999999953211111 1124579999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ |+|+|++||+++ ++.+..|+
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~ 210 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADY 210 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcE
Confidence 99999999999999999999999999999999999999999864 899999999986 44455665
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=307.16 Aligned_cols=194 Identities=26% Similarity=0.372 Sum_probs=160.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP--TEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEh
Confidence 477888888762 24699999999999999999999999999999999998765 479999999875
Q ss_pred Ch---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCH
Q 000907 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSg 815 (1230)
.. ...++.++|++|++.+++ .|++||+.+....+ . . ..++++++++.+++. +..++. +..|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~-~---~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G-E---KNVDVEYYLSIVGLNKEYATRD-----VKNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C-c---HHHHHHHHHHHcCCCHHHhhCC-----cccCCH
Confidence 32 234567999999988876 69999998653221 1 1 124578889999996 444543 457999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+..|+
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~ 201 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDY 201 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999998764 999999999987 45566676
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=304.40 Aligned_cols=184 Identities=30% Similarity=0.408 Sum_probs=156.8
Q ss_pred EeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh-hcccceEEEEccCCccCCCCCHHHH
Q 000907 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-ETFTRISGYCEQNDIHSPYVTVYES 766 (1230)
Q Consensus 688 iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~ltv~e~ 766 (1230)
+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+|+.||
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p--~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP--DSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 89999999999999999999999999999999998765 47999999987643 1235679999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHH
Q 000907 767 LLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 846 (1230)
Q Consensus 767 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~ 846 (1230)
+.+..... .....+..+.+.++++.+++.+..++.+ +.||||||||++|||||+.+|++++|||||+|||+.
T Consensus 92 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 92 IAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 98764332 1233444556788999999987777654 469999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 847 AAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 847 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+++.+.+.|++++++ |+|+|++||++. ++.+..|+
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~ 199 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADK 199 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCE
Confidence 999999999998754 999999999986 45566776
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-33 Score=307.61 Aligned_cols=205 Identities=22% Similarity=0.305 Sum_probs=163.6
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--RG-YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~--~~-~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 478889988763 2469999999999999999999999999999999999864 21 2479999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
.++.. ...++.++|++|+..+++.+|+.||+.+...... .....+.+++++++++.+++.+....... ..+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 147 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLK-SNAM 147 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcC
Confidence 87632 2346789999999999999999999987643221 11223334567888999998542111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~ 216 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDY 216 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCE
Confidence 7999999999999999999999999999999999999999999999865 689999999986 55566776
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=349.07 Aligned_cols=188 Identities=28% Similarity=0.412 Sum_probs=157.9
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++++|++++|+. ++.+|+|+|+++++||++||+||||||||||+|+|+|..++ .+|+|.+||.+
T Consensus 333 ~~I~~~~vsf~Y~~------------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p--~~G~I~i~g~~ 398 (529)
T TIGR02868 333 PTLELRDLSFGYPG------------SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDP--LQGEVTLDGVS 398 (529)
T ss_pred ceEEEEEEEEecCC------------CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEE
Confidence 46999999999841 23499999999999999999999999999999999998876 37999999987
Q ss_pred cC--hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCC
Q 000907 739 KN--QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLPG 809 (1230)
Q Consensus 739 ~~--~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~ 809 (1230)
+. ...+++.++||+|++.+++ .|++||+.++. ++.+ ++.++++++..++.+ -.|+.+|+.+
T Consensus 399 i~~~~~~lr~~i~~V~Q~~~lF~-~TI~eNI~~g~-----~~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G 468 (529)
T TIGR02868 399 VSSLQDELRRRISVFAQDAHLFD-TTVRDNLRLGR-----PDAT----DEELWAALERVGLADWLRSLPDGLDTVLGEGG 468 (529)
T ss_pred hhhHHHHHHhheEEEccCccccc-ccHHHHHhccC-----CCCC----HHHHHHHHHHcCCHHHHHhCcccccchhcccc
Confidence 54 3566789999999999886 49999998751 1122 234666777766643 3477787654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQP 872 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 872 (1230)
..||||||||++|||||+++|+||+||||||+||+.+++.+.+.|+++ .+++|+|+++|++
T Consensus 469 -~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~-~~~~TvIiItHrl 529 (529)
T TIGR02868 469 -ARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAA-LSGKTVVVITHHL 529 (529)
T ss_pred -CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEecCC
Confidence 469999999999999999999999999999999999999999999876 4689999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=311.12 Aligned_cols=203 Identities=26% Similarity=0.350 Sum_probs=162.6
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC------eEEEEEEE
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG------YITGNITI 734 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~------~~~G~i~~ 734 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. ..+|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 56788887652 356999999999999999999999999999999999987642 12799999
Q ss_pred CCeecCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000907 735 SGYPKNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS-SEVNSKTREMFVEEVMELVELNPLRQALVGLPGV 810 (1230)
Q Consensus 735 ~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 810 (1230)
+|.+... ..+++.++|++|++..++.+|++||+.+....... ......+..+.++++++.+++.+..++. +
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD-----V 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-----c
Confidence 9987532 23456689999998766679999999875321110 0111123345678899999998766654 3
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHH
Q 000907 811 NGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAF 880 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~---------~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~f 880 (1230)
..||||||||++||++|+ .+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+..
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 579999999999999999 599999999999999999999999999998765 899999999986 555667
Q ss_pred hc
Q 000907 881 DA 882 (1230)
Q Consensus 881 d~ 882 (1230)
|+
T Consensus 223 d~ 224 (272)
T PRK13547 223 DR 224 (272)
T ss_pred CE
Confidence 76
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=313.65 Aligned_cols=202 Identities=25% Similarity=0.275 Sum_probs=166.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCe-EEEEEEECCee
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY-ITGNITISGYP 738 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~-~~G~i~~~g~~ 738 (1230)
.++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..++.. .+|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 4788999887631 12459999999999999999999999999999999999876531 13999999998
Q ss_pred cCh---hcccceEEEEccCCc-cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000907 739 KNQ---ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 814 (1230)
Q Consensus 739 ~~~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 814 (1230)
... ...++.+||++|++. .++..||.||+.+..... ....++..++++++++.++|.+..++. ++.||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSE-----PANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCC
Confidence 643 234567999999974 667789999998764322 234444556788999999998776665 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++.. + ...|+
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~ 212 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQ 212 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCE
Confidence 99999999999999999999999999999999999999999998764 8999999999874 3 45776
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=314.78 Aligned_cols=204 Identities=20% Similarity=0.283 Sum_probs=162.9
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+... ....+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~i~nl~~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKK--------TPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS--ETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCC--------CccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEc
Confidence 58899999887410 00013599999999999999999999999999999999998765 479999999875
Q ss_pred C--------hhcccceEEEEccCCcc-CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCC
Q 000907 740 N--------QETFTRISGYCEQNDIH-SPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPG 809 (1230)
Q Consensus 740 ~--------~~~~~~~~~~v~q~~~~-~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~ 809 (1230)
. ...+++.++|++|++.. +...|++||+.+..... ....+...++++++++.+++. +..++.
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~----- 147 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS----- 147 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC-----
Confidence 3 12345679999999732 22369999998864322 123334445678899999994 555554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||++||++. ++.+..|+
T Consensus 148 ~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~ 220 (289)
T PRK13645 148 PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADE 220 (289)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCE
Confidence 357999999999999999999999999999999999999999999999875 4899999999987 56667777
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=341.10 Aligned_cols=204 Identities=22% Similarity=0.296 Sum_probs=168.7
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++++. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..++++.+|+|.++|.+.
T Consensus 5 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 378889988762 3469999999999999999999999999999999999876533479999999876
Q ss_pred Chh----cccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 740 NQE----TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
... ..++.+||++|++.+++.+||+||+.+....+.......+...++++++++.+++.+..++.+ +.|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCH
Confidence 421 234679999999999999999999988643221111123334456889999999987777654 47999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+..|+
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~ 212 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDT 212 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCE
Confidence 9999999999999999999999999999999999999999999877999999999986 45556676
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=323.83 Aligned_cols=179 Identities=25% Similarity=0.359 Sum_probs=154.5
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh-------hcccceEEEEccCCccCCCCCH
Q 000907 691 GVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-------ETFTRISGYCEQNDIHSPYVTV 763 (1230)
Q Consensus 691 ~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~ltv 763 (1230)
|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP--DEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 89999999999999999999999999999998765 37999999987532 1245679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCC
Q 000907 764 YESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 843 (1230)
Q Consensus 764 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgL 843 (1230)
+||+.|+.... ...+.+++++++++.++|.+..++.. +.||||||||++|||||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99998864321 12233456889999999988777654 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 844 DARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 844 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|+.++..+.+.|++++++ |+|+|++||++. ++....|+
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~ 201 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADR 201 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999998765 899999999987 56677787
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=310.12 Aligned_cols=200 Identities=26% Similarity=0.291 Sum_probs=165.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV--KSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 4889999987631 123589999999999999999999999999999999998765 479999999876
Q ss_pred Ch---hcccceEEEEccCCc-cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 740 NQ---ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
.. ...++.++|++|++. +++..|+.+|+.+..... ....+...+.++++++.+++.+..+.. ++.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCH
Confidence 42 245667999999974 677789999998864322 123344455678899999998776655 357999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++.. +.. .|+
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~~-~d~ 211 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AME-ADH 211 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hhc-CCE
Confidence 9999999999999999999999999999999999999999998764 8999999999873 333 665
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=301.36 Aligned_cols=183 Identities=23% Similarity=0.344 Sum_probs=152.5
Q ss_pred CceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh-------hcccceEEEEccCCc
Q 000907 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-------ETFTRISGYCEQNDI 756 (1230)
Q Consensus 684 ~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~ 756 (1230)
+++.+ |+|+++++ |+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.
T Consensus 11 ~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 85 (214)
T cd03297 11 PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP--DGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYA 85 (214)
T ss_pred CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEecccccchhhhhhHhhcEEEEecCCc
Confidence 34445 99999999 99999999999999999999998765 37999999987531 124567999999999
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEE
Q 000907 757 HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 836 (1230)
Q Consensus 757 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illl 836 (1230)
+++.+|+.||+.+..... .....+++++++++.+++.+..+.. ++.||||||||++||++|+.+|++++|
T Consensus 86 ~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llll 155 (214)
T cd03297 86 LFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALARALAAQPELLLL 155 (214)
T ss_pred cCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999998764321 2233345678899999998766654 357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 837 DEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 837 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||+|||+.+++.+.+.|++++++ |+|||++||++. ++.+..|+
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~ 201 (214)
T cd03297 156 DEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADR 201 (214)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCE
Confidence 9999999999999999999998765 899999999986 34455665
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=302.61 Aligned_cols=195 Identities=23% Similarity=0.362 Sum_probs=159.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP--TSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCeEEECCEEc
Confidence 478899988762 34699999999999999999999999999999999998664 479999999875
Q ss_pred Ch---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCH
Q 000907 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSg 815 (1230)
.. ..+++.++|++|++.+++ .|++||+.+....+.. .. .++.++++++.+++. ...++. ++.|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---QP--DPAIFLDDLERFALPDTILTKN-----IAELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---Ch--HHHHHHHHHHHcCCChHHhcCC-----cccCCH
Confidence 32 234567899999988887 4999999875433211 11 134567899999995 344544 357999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ .|.|||+++|++.. + +..|+
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~ 206 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADK 206 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCE
Confidence 999999999999999999999999999999999999999999875 48999999999863 3 34555
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=289.58 Aligned_cols=161 Identities=27% Similarity=0.416 Sum_probs=140.9
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (173)
T cd03230 2 EVRNLSKRYG-------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP--DSGEIKVLGKDIKK 66 (173)
T ss_pred EEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEccc
Confidence 5677777652 23599999999999999999999999999999999998765 37999999987542
Q ss_pred --hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000907 742 --ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 819 (1230)
Q Consensus 742 --~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrq 819 (1230)
..+++.++|++|++.+++.+|+.||+. |||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~q 102 (173)
T cd03230 67 EPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQ 102 (173)
T ss_pred chHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHH
Confidence 244567999999999888899999863 8999999
Q ss_pred HHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 820 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 820 rl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|++|||||+.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||++. ++.+..|+
T Consensus 103 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~ 164 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDR 164 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999877899999999986 45555665
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=301.37 Aligned_cols=205 Identities=22% Similarity=0.288 Sum_probs=160.7
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEEC--Ce-
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITIS--GY- 737 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~--g~- 737 (1230)
++++|+++.+..... ...++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++ |.
T Consensus 2 l~~~~l~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP--DSGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEEecCCCc
Confidence 567888887742100 00124799999999999999999999999999999999998765 37999998 42
Q ss_pred -ecC---hhc----ccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCC
Q 000907 738 -PKN---QET----FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL-RQALVGLP 808 (1230)
Q Consensus 738 -~~~---~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~ 808 (1230)
+.. ... .++.++|++|++.+++.+||.|++.+..... ........+.++++++.+++.+. .+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 146 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLP---- 146 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC----
Confidence 321 111 2356899999999999999999998754322 12333344567889999999753 3433
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+.+||||||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+..|+
T Consensus 147 -~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~ 218 (224)
T TIGR02324 147 -PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADR 218 (224)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcce
Confidence 4579999999999999999999999999999999999999999999998777999999999954 33345565
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=316.11 Aligned_cols=211 Identities=17% Similarity=0.196 Sum_probs=164.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--eEEEEEEECCe
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG--YITGNITISGY 737 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~--~~~G~i~~~g~ 737 (1230)
-++++|+++.+... .+.+.+|+|||++|++||+++|+|+||||||||+++|+|..++. ..+|+|.++|.
T Consensus 3 ~L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~ 73 (330)
T PRK15093 3 LLDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDI 73 (330)
T ss_pred eEEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCE
Confidence 37889999887421 13457999999999999999999999999999999999986521 24799999998
Q ss_pred ecCh---hc----ccceEEEEccCCc--cCCCCCHHHHHHHHHHhcCCCC---CCHHHHHHHHHHHHHHcCCCccccccc
Q 000907 738 PKNQ---ET----FTRISGYCEQNDI--HSPYVTVYESLLYSAWLRLSSE---VNSKTREMFVEEVMELVELNPLRQALV 805 (1230)
Q Consensus 738 ~~~~---~~----~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~ 805 (1230)
++.. .. +++.++||+|++. +.|.+||.+++........... ....+..+++.++++.+||.+..+..
T Consensus 74 ~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~- 152 (330)
T PRK15093 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAM- 152 (330)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHH-
Confidence 7532 11 2357999999975 6788999999976422111000 11123345688999999997532211
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 806 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 806 ~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+..+.+||||||||++||+||+.+|++|+|||||+|||+.++..+++.|+++.++ |.|+|++|||++ .+.+..|+
T Consensus 153 -~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dr 228 (330)
T PRK15093 153 -RSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADK 228 (330)
T ss_pred -hCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCE
Confidence 1124579999999999999999999999999999999999999999999999764 999999999986 45566777
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=297.88 Aligned_cols=208 Identities=22% Similarity=0.307 Sum_probs=170.2
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC-C-C-eEEEEEEECCe
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT-R-G-YITGNITISGY 737 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~-~-~-~~~G~i~~~g~ 737 (1230)
++++|++.++... .+...+++||||++++||++||+|.|||||||+.++|.|..+ + + ..+|+|.++|.
T Consensus 2 L~v~nL~v~f~~~---------~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTD---------AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecC---------CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 5678888877542 234679999999999999999999999999999999999876 3 3 35689999998
Q ss_pred ec---Chh----cccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHHcCCCccccccccC
Q 000907 738 PK---NQE----TFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEV-NSKTREMFVEEVMELVELNPLRQALVGL 807 (1230)
Q Consensus 738 ~~---~~~----~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 807 (1230)
++ +.+ -+.+.+++++|++ .+.|.+||.+.+.-....+. .. .+++..+++.++++.+|+.+.....-.
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~- 149 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPERRLKS- 149 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHHHHhh-
Confidence 64 222 2346899999996 57899999998876654332 22 345566778999999999875433322
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.+.+|||||||||.||.||+.+|++|+.||||++||...+.+|+++|+++.+ .|.++|++|||.+ -+.+..|+
T Consensus 150 -YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDr 223 (316)
T COG0444 150 -YPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADR 223 (316)
T ss_pred -CCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcce
Confidence 3568999999999999999999999999999999999999999999999986 5999999999987 56778887
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-33 Score=309.59 Aligned_cols=208 Identities=20% Similarity=0.249 Sum_probs=165.3
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++++..... ..+.+.+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 5 l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 78 (267)
T PRK15112 5 LEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP--TSGELLIDDHPLH 78 (267)
T ss_pred EEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECC
Confidence 789999988741100 0001234699999999999999999999999999999999998765 4799999998764
Q ss_pred h---hcccceEEEEccCCc--cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCC
Q 000907 741 Q---ETFTRISGYCEQNDI--HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGVNGLS 814 (1230)
Q Consensus 741 ~---~~~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lS 814 (1230)
. ...++.++|++|++. +.+.+|+.|++.+...... ........+.++++++.+++. +..+.. +..||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 151 (267)
T PRK15112 79 FGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHMLA 151 (267)
T ss_pred CCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhcC
Confidence 2 123457999999874 5678899999987654321 123334445688999999994 444544 34799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||++||++|+.+|++|+|||||+|||+.+++.+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~ 219 (267)
T PRK15112 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQ 219 (267)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCE
Confidence 99999999999999999999999999999999999999999998764 899999999986 55666777
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=322.42 Aligned_cols=175 Identities=23% Similarity=0.356 Sum_probs=152.6
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh-------hcccceEEEEccCCccCCCCCH
Q 000907 691 GVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-------ETFTRISGYCEQNDIHSPYVTV 763 (1230)
Q Consensus 691 ~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~ltv 763 (1230)
|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.++|++|+..++|.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRP--QKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 89999999999999999999999999999998765 37999999987532 2245789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCC
Q 000907 764 YESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 843 (1230)
Q Consensus 764 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgL 843 (1230)
+||+.+... ....++++++++.+++.+..++.. +.||||||||++|||||+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999987532 112345789999999988777653 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 844 DARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 844 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|+.++..+.+.|++++++ |+|+|++||++. ++..+.|+
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~ 198 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADR 198 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCE
Confidence 999999999999998765 899999999986 66777787
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-33 Score=311.85 Aligned_cols=204 Identities=21% Similarity=0.272 Sum_probs=165.9
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
-++++|+++.++... ..+.+.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP--SEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEec
Confidence 378999998874110 01134699999999999999999999999999999999998765 479999999876
Q ss_pred Ch----hcccceEEEEccCCc-cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000907 740 NQ----ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 814 (1230)
Q Consensus 740 ~~----~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 814 (1230)
.. ...++.+||++|++. .+...||.|++.|..... .....+.+++++++++.+||.+..++.+ ..||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCC
Confidence 42 234678999999974 233469999998865422 2234445567899999999988777664 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++.. +. ..|+
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~-~~d~ 213 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AV-EADR 213 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hh-cCCE
Confidence 99999999999999999999999999999999999999999998764 9999999999984 33 3666
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=349.44 Aligned_cols=201 Identities=30% Similarity=0.430 Sum_probs=165.0
Q ss_pred CCCceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEEC
Q 000907 656 FEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITIS 735 (1230)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~ 735 (1230)
.....++|+|++++|+.++ +..+|+|+|+.|++||.+||+|||||||||++++|.+.+.| .+|+|.+|
T Consensus 346 ~~~g~ief~nV~FsYPsRp----------dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP--~~G~V~id 413 (1228)
T KOG0055|consen 346 SIKGEIEFRNVCFSYPSRP----------DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDP--TSGEVLID 413 (1228)
T ss_pred ccccceEEEEEEecCCCCC----------cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCC--CCceEEEc
Confidence 3456899999999998542 45699999999999999999999999999999999998876 48999999
Q ss_pred CeecCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH-------cCCCccccccc
Q 000907 736 GYPKNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMEL-------VELNPLRQALV 805 (1230)
Q Consensus 736 g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-------l~l~~~~~~~~ 805 (1230)
|.++.. +.+|..+|.|.|+|.++. .|++||+.|+. ++.+.++ +++..+. ..+.+-.|+.+
T Consensus 414 G~di~~~~~~~lr~~iglV~QePvlF~-~tI~eNI~~G~-----~dat~~~----i~~a~k~ana~~fi~~lp~g~~T~v 483 (1228)
T KOG0055|consen 414 GEDIRNLNLKWLRSQIGLVSQEPVLFA-TTIRENIRYGK-----PDATREE----IEEAAKAANAHDFILKLPDGYDTLV 483 (1228)
T ss_pred CccchhcchHHHHhhcCeeeechhhhc-ccHHHHHhcCC-----CcccHHH----HHHHHHHccHHHHHHhhHHhhcccc
Confidence 998643 567889999999997765 79999999852 1222222 2333322 24556678888
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 806 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 806 ~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|..++ +||||||||++|||||++||+|||||||||+||+++++.|++.|++. .+|+|.|+++|+.| .|-+ -|+
T Consensus 484 ge~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~-~~grTTivVaHRLS-tIrn-aD~ 556 (1228)
T KOG0055|consen 484 GERGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKA-SKGRTTIVVAHRLS-TIRN-ADK 556 (1228)
T ss_pred cCCCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHh-hcCCeEEEEeeehh-hhhc-cCE
Confidence 87665 49999999999999999999999999999999999999999999876 57999999999988 3433 565
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=306.79 Aligned_cols=200 Identities=22% Similarity=0.319 Sum_probs=162.1
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-e--EEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG-Y--ITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~-~--~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+|+|+|..++. + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 478899988763 246999999999999999999999999999999999976532 1 479999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP----LRQALVGL 807 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 807 (1230)
.++.. ...++.++|++|++.+++ .|+.||+.+....+. ........+.++++++.+++.+ ..++
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~---- 146 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNK---- 146 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcC----
Confidence 87532 234567999999998887 899999987654321 1122333456778889888842 2333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+..|+
T Consensus 147 -~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~ 218 (259)
T PRK14260 147 -SALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDF 218 (259)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCe
Confidence 2457999999999999999999999999999999999999999999999864 699999999987 55666676
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=304.06 Aligned_cols=196 Identities=22% Similarity=0.282 Sum_probs=161.1
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++ ..|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYH-------------HL--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP--ASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEEC-------------Cc--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCeecC
Confidence 56888888763 11 2389999999999999999999999999999998765 4799999998754
Q ss_pred hh-cccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHH
Q 000907 741 QE-TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 819 (1230)
Q Consensus 741 ~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrq 819 (1230)
.. ..++.++|++|++.+++.+|+.||+.+...... .. .+..+++++++++.+++.+..++.+ +.|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHH
Confidence 31 234679999999999999999999987532111 11 1233556889999999987777664 479999999
Q ss_pred HHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 820 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 820 rl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|++||++++.+|++++|||||+|||+.+++.+.+.|++++++ |+|+|+++|++. ++.+..|+
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~ 199 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPR 199 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999998754 899999999987 45566676
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=305.56 Aligned_cols=200 Identities=22% Similarity=0.317 Sum_probs=160.8
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC--C-eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR--G-YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~--~-~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ . +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 477889988763 24699999999999999999999999999999999997532 1 1479999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP----LRQALVGL 807 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 807 (1230)
.+... ...++.++|++|++.+++ .|+.||+.+....+. ....+..++.++++++.+++.+ ..++.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 143 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKS--- 143 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcC---
Confidence 87642 234667999999988887 899999998654321 1123334556788888888753 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||++||++. ++.+..|+
T Consensus 144 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~ 214 (250)
T PRK14240 144 --ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQ-QASRISDK 214 (250)
T ss_pred --CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHH-HHHhhCCE
Confidence 45799999999999999999999999999999999999999999999985 4899999999976 55666676
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=306.84 Aligned_cols=204 Identities=22% Similarity=0.281 Sum_probs=162.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--RG-YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~--~~-~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +. ..+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 488999998763 2469999999999999999999999999999999999764 21 1479999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
.+... ...++.++|++|++.+++. |++||+.+....+. .....+..++++++++.+++.+...... +...+
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~ 154 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRL-HTQAL 154 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhh-hCCcc
Confidence 87631 2345679999999888875 99999987643321 1123334456788899988853211111 11245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|+++|++. ++.+..|+
T Consensus 155 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~ 223 (259)
T PRK14274 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQ 223 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCE
Confidence 7999999999999999999999999999999999999999999999864 799999999986 55666776
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=305.18 Aligned_cols=200 Identities=22% Similarity=0.273 Sum_probs=161.9
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 736 (1230)
-++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 467888887762 246999999999999999999999999999999999975431 2479999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP----LRQALVGL 807 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 807 (1230)
.++.. ...++.++|++|++.+++ .|++||+.+...... ........++++++++.+++.+ ..+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 143 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKK---- 143 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhC----
Confidence 87632 134567999999998887 899999988654321 1122334456788899998742 2232
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
..+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||++||++. ++.+..|+
T Consensus 144 -~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~ 215 (251)
T PRK14270 144 -SALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDY 215 (251)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCE
Confidence 2457999999999999999999999999999999999999999999999865 689999999986 56677777
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=305.31 Aligned_cols=204 Identities=27% Similarity=0.332 Sum_probs=160.7
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--RG-YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~--~~-~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +. ..+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 478899988763 2469999999999999999999999999999999999732 21 1379999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
.+... ..+++.++|++|++.+++ .||+||+.+....+. .......++.++++++.+++.+...... +..++
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 147 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRL-HDSAL 147 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHH-hcCcc
Confidence 87631 234567999999988887 899999988643321 1122233456778888888753211111 11245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||++. ++.+..|+
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~ 216 (252)
T PRK14239 148 GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDR 216 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCE
Confidence 7999999999999999999999999999999999999999999999864 699999999986 56667777
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=304.85 Aligned_cols=203 Identities=21% Similarity=0.300 Sum_probs=161.1
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECCe
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISGY 737 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~ 737 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 4 IEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred EEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 67888888763 246999999999999999999999999999999999976421 24799999998
Q ss_pred ecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000907 738 PKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNG 812 (1230)
Q Consensus 738 ~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 812 (1230)
+... ...++.++|++|++.+++ .|++||+.+...... .......++.+++.++.+++.+..+... +....+
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~ 146 (250)
T PRK14262 71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSEL-NKPGTR 146 (250)
T ss_pred EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHH-hCChhh
Confidence 7532 234567999999998887 899999988653321 1122333455788888888854211111 122457
Q ss_pred CCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 813 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||++. ++.+..|+
T Consensus 147 LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~ 214 (250)
T PRK14262 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADY 214 (250)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999999864 799999999987 45566676
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=299.30 Aligned_cols=185 Identities=26% Similarity=0.330 Sum_probs=149.9
Q ss_pred cccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChhcccceEEEEccCCcc
Q 000907 678 RRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIH 757 (1230)
Q Consensus 678 ~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~ 757 (1230)
++.+.++++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+...+
T Consensus 27 ~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~---------~~~~~~~ 95 (224)
T cd03220 27 GRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP--DSGTVTVRGRVSSL---------LGLGGGF 95 (224)
T ss_pred hhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEchh---------hcccccC
Confidence 344455677899999999999999999999999999999999998765 47999999986421 1112334
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEe
Q 000907 758 SPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 837 (1230)
Q Consensus 758 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlD 837 (1230)
.+.+||+||+.+...... .......+.++++++.+++.+..++.+ +.||||||||++|||+|+.+|++++||
T Consensus 96 ~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllD 167 (224)
T cd03220 96 NPELTGRENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLID 167 (224)
T ss_pred CCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 567899999988654321 223334456788899999987777654 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 838 EPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 838 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||+|||+.++..+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 168 EP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~ 211 (224)
T cd03220 168 EVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDR 211 (224)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999998777899999999986 34445565
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=309.56 Aligned_cols=201 Identities=23% Similarity=0.293 Sum_probs=165.7
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+.. ...+.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~----------~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEK----------ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE--FEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCC----------CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEEC
Confidence 4789999988741 1123599999999999999999999999999999999998765 479999999876
Q ss_pred Ch---hcccceEEEEccCCc-cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 740 NQ---ETFTRISGYCEQNDI-HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
.. ...++.+||++|++. .++..||.||+.+..... .....+..++++++++.+++.+..++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCH
Confidence 42 234678999999974 577789999998764322 123334445688999999998776664 357999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++.. + ...|+
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~ 209 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDR 209 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCE
Confidence 9999999999999999999999999999999999999999998765 9999999999874 3 24666
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=295.80 Aligned_cols=188 Identities=26% Similarity=0.295 Sum_probs=166.6
Q ss_pred CceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh-------hcccceEEEEccCCc
Q 000907 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-------ETFTRISGYCEQNDI 756 (1230)
Q Consensus 684 ~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~ 756 (1230)
+-..-++|+|++++.||++.|||-||||||||+++|.++..+ .+|+|.++|.++.. .-+++.+++|+|...
T Consensus 39 g~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiep--t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa 116 (386)
T COG4175 39 GLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEP--TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA 116 (386)
T ss_pred CcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCC--CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc
Confidence 345679999999999999999999999999999999998775 48999999987532 224568999999999
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEE
Q 000907 757 HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 836 (1230)
Q Consensus 757 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illl 836 (1230)
++|+.||.||..|+..++ ..+++++++++.+.++..||....+.+ +++|||||||||.+||||+.||+|||+
T Consensus 117 LlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~y-----p~eLSGGMqQRVGLARAla~~~~IlLM 188 (386)
T COG4175 117 LLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKY-----PNELSGGMQQRVGLARALANDPDILLM 188 (386)
T ss_pred cccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcC-----cccccchHHHHHHHHHHHccCCCEEEe
Confidence 999999999999997765 467788999999999999999999887 468999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 837 DEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 837 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||+|+|||--+.++++-|.++.++ ++|||++|||.. |-+..-|+
T Consensus 189 DEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~r 234 (386)
T COG4175 189 DEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDR 234 (386)
T ss_pred cCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccce
Confidence 9999999999999999988888644 899999999987 44566666
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=291.58 Aligned_cols=183 Identities=21% Similarity=0.313 Sum_probs=152.8
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+++ +|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 65 (195)
T PRK13541 2 LSLHQLQFNIE-------------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQP--SSGNIYYKNCNIN 65 (195)
T ss_pred eEEEEeeEEEC-------------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCcccC
Confidence 56788887762 234555 9999999999999999999999999999998765 4799999998764
Q ss_pred hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000907 741 QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 820 (1230)
Q Consensus 741 ~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr 820 (1230)
... ++.++|++|+..+++..||.||+.+..... . ..+.++++++.+++.+..++. .+.||||||||
T Consensus 66 ~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~-----~---~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~r 131 (195)
T PRK13541 66 NIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIY-----N---SAETLYAAIHYFKLHDLLDEK-----CYSLSSGMQKI 131 (195)
T ss_pred hhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhc-----c---cHHHHHHHHHHcCCHhhhccC-----hhhCCHHHHHH
Confidence 322 346899999988888899999998754321 1 123567888999987766654 34799999999
Q ss_pred HHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 821 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 821 l~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
++||||++.+|++++|||||+|||+.+++.+.+.|++..++|+|+|+++|++.
T Consensus 132 l~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 184 (195)
T PRK13541 132 VAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES 184 (195)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence 99999999999999999999999999999999999877677999999999986
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=304.27 Aligned_cols=204 Identities=21% Similarity=0.276 Sum_probs=159.7
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-eEEEEEEECCe
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--RG-YITGNITISGY 737 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~--~~-~~~G~i~~~g~ 737 (1230)
-+++|+++.+. ++.+|+|+||++++||+++|+|+||||||||+++|+|... +. +.+|+|.++|.
T Consensus 6 ~~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 72 (251)
T PRK14244 6 ASVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGI 72 (251)
T ss_pred EEeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCE
Confidence 35677776652 3469999999999999999999999999999999999854 21 24799999998
Q ss_pred ecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000907 738 PKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNG 812 (1230)
Q Consensus 738 ~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 812 (1230)
++.. ...++.++|++|++.+++. |+.||+.+....+. ........++.++++++.+++.+...+... ..+..
T Consensus 73 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~ 149 (251)
T PRK14244 73 DVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLK-DSAFE 149 (251)
T ss_pred ehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhh-cChhh
Confidence 7532 1346679999999888875 99999987643321 111223334567888999998652211111 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 813 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|++. ++.+..|+
T Consensus 150 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~ 217 (251)
T PRK14244 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDR 217 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCE
Confidence 99999999999999999999999999999999999999999999985 4899999999987 55566776
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=304.06 Aligned_cols=204 Identities=24% Similarity=0.285 Sum_probs=160.9
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 467888887662 346999999999999999999999999999999999976532 2479999999
Q ss_pred eecC----hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000907 737 YPKN----QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNG 812 (1230)
Q Consensus 737 ~~~~----~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 812 (1230)
.++. ....++.++|++|++.+++ .||.||+.+...... ........+++++.++.+++.+....... .....
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~ 145 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLK-SHAFG 145 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhh-cCccc
Confidence 8753 1234667999999998887 899999987643221 11223334557778888887532111111 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 813 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+..|+
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~ 213 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDR 213 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999999865 689999999986 56666776
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=336.12 Aligned_cols=201 Identities=26% Similarity=0.347 Sum_probs=167.3
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++++. ++.+|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|.+..
T Consensus 5 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 69 (501)
T PRK10762 5 LQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR--DAGSILYLGKEVT 69 (501)
T ss_pred EEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 78888888762 35699999999999999999999999999999999998765 3799999998753
Q ss_pred h---h-cccceEEEEccCCccCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 741 Q---E-TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS-SEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 741 ~---~-~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
. . ..++.++|++|++.+++.+||+|++.++...+.. ......+.+++++++++.+++.+..+..+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 144 (501)
T PRK10762 70 FNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELSI 144 (501)
T ss_pred CCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCH
Confidence 2 1 1245799999999999999999999886432110 11223334456889999999988777654 46999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+..|+
T Consensus 145 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~ 210 (501)
T PRK10762 145 GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDD 210 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999999877999999999986 45566777
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=308.17 Aligned_cols=203 Identities=25% Similarity=0.387 Sum_probs=161.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL--ASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEh
Confidence 478899988763 124699999999999999999999999999999999998765 479999999876
Q ss_pred ChhcccceEEEEccCCccC--CCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000907 740 NQETFTRISGYCEQNDIHS--PYVTVYESLLYSAWLRLS-SEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~~~--~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 816 (1230)
.....++.++|++|++.+. ...+++|++.+....... ........++.++++++.+++.+..++.+ ..||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 4322334699999997642 234788888653211000 00111223445788899999987777654 469999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||++||+||+.+|++|+|||||+|||+.+++.+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~ 211 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDY 211 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999998877999999999986 45566666
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=305.30 Aligned_cols=204 Identities=23% Similarity=0.282 Sum_probs=162.3
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 25 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g 91 (272)
T PRK14236 25 ALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDG 91 (272)
T ss_pred EEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECC
Confidence 588999998763 246999999999999999999999999999999999986521 2579999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
.+... ...++.++|++|++.+++. |++||+.+...... .......++.++++++.+++.+....... ....
T Consensus 92 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 167 (272)
T PRK14236 92 QNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLH-ENAF 167 (272)
T ss_pred EECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhh-CCcc
Confidence 87642 2346789999999988886 99999987643321 11222334557888888888532111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||++. ++.+..|+
T Consensus 168 ~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~ 236 (272)
T PRK14236 168 GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDY 236 (272)
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCE
Confidence 7999999999999999999999999999999999999999999999875 799999999986 45566776
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=271.83 Aligned_cols=188 Identities=22% Similarity=0.329 Sum_probs=159.6
Q ss_pred cCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC---hhcccceEEEEccCCccC
Q 000907 682 HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN---QETFTRISGYCEQNDIHS 758 (1230)
Q Consensus 682 ~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---~~~~~~~~~~v~q~~~~~ 758 (1230)
..++..+|+++|+.+++||..+|.||||||||||+|+++.+.++ .+|++.+.|++.+ .+.+|..++||.|.+.++
T Consensus 12 ~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp--~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf 89 (223)
T COG4619 12 LAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISP--TSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALF 89 (223)
T ss_pred hcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCC--CCceEEEcCccccccChHHHHHHHHHHHcCcccc
Confidence 34556799999999999999999999999999999999998765 4799999999864 357888999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeC
Q 000907 759 PYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 838 (1230)
Q Consensus 759 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDE 838 (1230)
+. ||++|+.|.-.+|..+. ..+...+.++.+++.+..-+ ..+..||||||||++|+|-|..-|+||+|||
T Consensus 90 g~-tVeDNlifP~~~r~rr~-----dr~aa~~llar~~l~~~~L~----k~it~lSGGE~QriAliR~Lq~~P~ILLLDE 159 (223)
T COG4619 90 GD-TVEDNLIFPWQIRNRRP-----DRAAALDLLARFALPDSILT----KNITELSGGEKQRIALIRNLQFMPKILLLDE 159 (223)
T ss_pred cc-chhhccccchHHhccCC-----ChHHHHHHHHHcCCchhhhc----chhhhccchHHHHHHHHHHhhcCCceEEecC
Confidence 85 99999999877764322 23446778888888764322 1245799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHHHhc
Q 000907 839 PTSGLDARAAAVVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 839 PtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||+||+.+++.|-++|-++. ++.+.++.+||++...+ ..+|+
T Consensus 160 ~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~-rha~k 203 (223)
T COG4619 160 ITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAI-RHADK 203 (223)
T ss_pred chhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHh-hhhhe
Confidence 999999999999999998886 66899999999998544 66787
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=305.56 Aligned_cols=198 Identities=23% Similarity=0.294 Sum_probs=161.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC---CeEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR---GYITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 588999998763 24699999999999999999999999999999999998642 12479999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP----LRQALVGL 807 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 807 (1230)
.++.. ...++.++|++|++.+++. ||.||+.+....+. ... ...++++++++.+++.+ ..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~--- 177 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS--- 177 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC---
Confidence 87531 2346789999999888875 99999988654321 122 23456788999998853 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+..||||||||++|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+....|+
T Consensus 178 --~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dr 248 (285)
T PRK14254 178 --GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDK 248 (285)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCE
Confidence 457999999999999999999999999999999999999999999999875 489999999986 45556676
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=302.79 Aligned_cols=204 Identities=20% Similarity=0.259 Sum_probs=160.1
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 477889888763 246999999999999999999999999999999999987642 1259999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
.+... ...++.++|++|++.+++. |++||+.+....+.. ...+..++.++++++.+++.+..+... +....
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNL-HKSGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHh-hCCcc
Confidence 87532 2346789999999988875 999999886543211 112223445677788888753211111 11245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++. +|+|||+++|+++ ++-+..|+
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~ 215 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDW 215 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCE
Confidence 799999999999999999999999999999999999999999999884 6899999999986 44455566
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=305.61 Aligned_cols=204 Identities=25% Similarity=0.300 Sum_probs=163.8
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 736 (1230)
.+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 578999998873 356999999999999999999999999999999999986531 2479999999
Q ss_pred eecCh----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000907 737 YPKNQ----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNG 812 (1230)
Q Consensus 737 ~~~~~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 812 (1230)
.++.. ...++.++|++|++.+++ .|++||+.+..... ......+..+.+.++++.+++.+..++... ..+..
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87532 234678999999998887 89999998764322 112333334456788899998653222111 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 813 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||||++|||+|+.+|++|+|||||+|||+.+++.+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dr 231 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDR 231 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999999875 589999999986 55667776
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=288.74 Aligned_cols=163 Identities=29% Similarity=0.412 Sum_probs=141.5
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+. ++.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (178)
T cd03229 2 ELKNVSKRYG-------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP--DSGSILIDGEDLTD 66 (178)
T ss_pred EEEEEEEEEC-------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccc
Confidence 5677777652 24699999999999999999999999999999999998764 47999999987532
Q ss_pred -----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000907 742 -----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 742 -----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 816 (1230)
...++.++|++|++.+++.+|++|++.+. ||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G 104 (178)
T cd03229 67 LEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGG 104 (178)
T ss_pred cchhHHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHH
Confidence 24567899999999888889999987541 8999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+..|+
T Consensus 105 ~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~ 170 (178)
T cd03229 105 QQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADR 170 (178)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 999999999999999999999999999999999999999999876 899999999986 44445565
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=303.26 Aligned_cols=205 Identities=21% Similarity=0.282 Sum_probs=163.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. ..+|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 478999998763 235999999999999999999999999999999999986642 1369999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
.++.. ...++.++|++|+..+++ .|+.||+.+...... .....+..+++.++++.+++.+..+.... ..+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIH-KSAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhc-CCcc
Confidence 87521 234567999999988887 899999987643221 11222334567889999988542221111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++. ++.+..|+
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~ 220 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDF 220 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCE
Confidence 7999999999999999999999999999999999999999999999864 5899999999986 56677787
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=302.41 Aligned_cols=201 Identities=23% Similarity=0.280 Sum_probs=160.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCe---EEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY---ITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~---~~G~i~~~g 736 (1230)
-++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+|+|+|..++.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 467788887762 3469999999999999999999999999999999999865422 379999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP----LRQALVGL 807 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 807 (1230)
.+... ..+++.++|++|++.+++.+|+.||+.+...... ....+...+.++++++.+++.+ ..++.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 145 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTP--- 145 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCC---
Confidence 87632 2345679999999999999999999987643221 1122233455667777776542 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++ +++|+|+++|++. .+.+..|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~ 216 (252)
T PRK14272 146 --ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-KVTTIIIVTHNMH-QAARVSDT 216 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCE
Confidence 45799999999999999999999999999999999999999999999986 4799999999987 45556676
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=300.69 Aligned_cols=186 Identities=24% Similarity=0.294 Sum_probs=152.2
Q ss_pred EeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--eEEEEEEECCeecChhcc-cceEEEEccCCc--cCCCCC
Q 000907 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG--YITGNITISGYPKNQETF-TRISGYCEQNDI--HSPYVT 762 (1230)
Q Consensus 688 iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~--~~~G~i~~~g~~~~~~~~-~~~~~~v~q~~~--~~~~lt 762 (1230)
+|+|+|+++++||+++|+||||||||||+|+|+|..++. +.+|+|.++|.++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 478999999999999999999999999999999987641 147999999988653323 357999999974 557789
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCC
Q 000907 763 VYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP---LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 839 (1230)
Q Consensus 763 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEP 839 (1230)
+.|++.+...... .......++++++++.+++.+ ..+.. +..||||||||++|||+|+.+|++|+||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999977543221 112333456889999999973 34443 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 840 TSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 840 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|+|||+.++..+.+.|++++++ |+|||+++|++. ++....|+
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~ 195 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADE 195 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999998764 899999999987 56666776
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=302.52 Aligned_cols=204 Identities=26% Similarity=0.303 Sum_probs=160.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|...+. ..+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 478899988763 346999999999999999999999999999999999975321 1379999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
.++.. ...++.++|++|++.+++. ||+||+.+....+. .......++.++++++.+++.+....... ....
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 148 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRLH-DSAL 148 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHhh-cChh
Confidence 87642 2345679999999988874 99999998754332 11222334567788888887532111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++|||+|+.+|++++|||||+|||+.+++.+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 149 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~ 217 (253)
T PRK14261 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDY 217 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCE
Confidence 7999999999999999999999999999999999999999999999865 689999999986 35556676
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-32 Score=301.71 Aligned_cols=204 Identities=18% Similarity=0.210 Sum_probs=162.9
Q ss_pred CceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEE
Q 000907 658 PFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITI 734 (1230)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~ 734 (1230)
|..+..+++++.+ +++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. +.+|+|.+
T Consensus 6 ~~~~~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~ 72 (261)
T PRK14263 6 PIVMDCKLDKIFY-------------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHF 72 (261)
T ss_pred CceEEEEeEEEEe-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEE
Confidence 3457777777655 3457999999999999999999999999999999999986531 24799999
Q ss_pred CCeecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000907 735 SGYPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPG 809 (1230)
Q Consensus 735 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 809 (1230)
+|.++.. ..+++.++|++|++.++ .+|+.||+.+....+. . .....+.++++++.+++.+..+...+ ..
T Consensus 73 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~ 146 (261)
T PRK14263 73 LGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VS 146 (261)
T ss_pred CCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CC
Confidence 9987532 23456799999998877 5999999988754321 1 12234567889999998643322221 23
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.+.||||||||++|||||+++|++|+|||||+|||+.++..+.+.|+++. +++|+|+++|++. ++.+..|+
T Consensus 147 ~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~ 217 (261)
T PRK14263 147 GLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADT 217 (261)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCE
Confidence 45799999999999999999999999999999999999999999999985 4799999999987 45566776
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=303.05 Aligned_cols=198 Identities=22% Similarity=0.261 Sum_probs=159.2
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--eEEEEEEECCe
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG--YITGNITISGY 737 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~--~~~G~i~~~g~ 737 (1230)
.++++|+++.+. +.+|+|+|+++++||+++|+||||||||||+++|+|..++. ..+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~ 69 (254)
T PRK10418 4 QIELRNIALQAA--------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK 69 (254)
T ss_pred EEEEeCeEEEec--------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCe
Confidence 578899988651 25999999999999999999999999999999999987641 14799999998
Q ss_pred ecChhcc-cceEEEEccCCc--cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc---ccccccCCCCC
Q 000907 738 PKNQETF-TRISGYCEQNDI--HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL---RQALVGLPGVN 811 (1230)
Q Consensus 738 ~~~~~~~-~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---~~~~~~~~~~~ 811 (1230)
++..... ++.++|++|++. +.+..|+.+++.+...... ... .++.++++++.+++.+. .++. ++
T Consensus 70 ~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~~ 139 (254)
T PRK10418 70 PVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKLY-----PF 139 (254)
T ss_pred eccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhcC-----Cc
Confidence 8653222 357999999974 4566799999876433221 111 23567889999999762 3333 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+..|+
T Consensus 140 ~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~ 210 (254)
T PRK10418 140 EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADD 210 (254)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCE
Confidence 79999999999999999999999999999999999999999999998764 899999999986 34455666
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-32 Score=309.31 Aligned_cols=205 Identities=20% Similarity=0.259 Sum_probs=164.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC---CeEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR---GYITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~g 736 (1230)
.++++|+++.+.. +.+.+|+|+|++|++||++||+|||||||||||++|+|.... .+.+|+|.+||
T Consensus 80 ~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG 148 (329)
T PRK14257 80 VFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLG 148 (329)
T ss_pred eEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 5899999998741 234699999999999999999999999999999999997642 12479999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVN-SKTREMFVEEVMELVELNPLRQALVGLPGV 810 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 810 (1230)
.++.. ...++.++||+|++.+++ .|++||+.|..... ... .+..++.++++++.+++.+..++.++. ..
T Consensus 149 ~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~-~~ 223 (329)
T PRK14257 149 TNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDK-AG 223 (329)
T ss_pred EEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhC-Cc
Confidence 98742 245678999999998875 79999999864321 112 222334567888888875433333333 24
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
..||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++.+ ++|+|++||++. .+.+..|+
T Consensus 224 ~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Dr 293 (329)
T PRK14257 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDE 293 (329)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCE
Confidence 57999999999999999999999999999999999999999999998865 799999999986 45566777
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=302.06 Aligned_cols=200 Identities=24% Similarity=0.318 Sum_probs=160.3
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC--C-eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR--G-YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~--~-~~~G~i~~~g 736 (1230)
.+.++|+++++. .+.+|+|+|+++++||+++|+|+||||||||+++|+|..++ . +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 378899988763 24699999999999999999999999999999999998642 1 2479999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP----LRQALVGL 807 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 807 (1230)
.+... ...++.++|++|++.+++ .||+||+.+...... ....+..++.++++++.+++.. ..+.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 143 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDR---- 143 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhcc----
Confidence 87532 234567999999988876 799999987643221 1122233456788889888842 2222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
...+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++. +++|||++||++. ++.+..|+
T Consensus 144 -~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~ 215 (251)
T PRK14251 144 -NAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-HQYTFIMVTHNLQ-QAGRISDQ 215 (251)
T ss_pred -ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-cCCeEEEEECCHH-HHHhhcCE
Confidence 245799999999999999999999999999999999999999999999985 4799999999987 45566676
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=303.06 Aligned_cols=200 Identities=24% Similarity=0.248 Sum_probs=160.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee-
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP- 738 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~- 738 (1230)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP--DAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCccc
Confidence 478899988763 24699999999999999999999999999999999998765 37999999986
Q ss_pred ----cCh---hc----ccceEEEEccCCc--cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccc
Q 000907 739 ----KNQ---ET----FTRISGYCEQNDI--HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQAL 804 (1230)
Q Consensus 739 ----~~~---~~----~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~ 804 (1230)
+.. .. .++.++|++|++. +.+.+|+.||+.+...... ........+.++++++.+++.+ ..++.
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 432 11 2456999999973 6777899999876432211 1122233456788999999963 44443
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 805 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 805 ~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||++. .+.+..|+
T Consensus 149 -----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~ 221 (258)
T PRK11701 149 -----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHR 221 (258)
T ss_pred -----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCE
Confidence 3579999999999999999999999999999999999999999999998764 899999999986 44455666
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=345.92 Aligned_cols=195 Identities=23% Similarity=0.350 Sum_probs=160.7
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++++|+++.+. +++.+|+|+|++++|||.+||+||||||||||+++|+|.. + .+|+|.+||.+
T Consensus 348 ~~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEe
Confidence 3699999987542 2346999999999999999999999999999999999988 5 37999999988
Q ss_pred cC---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCC
Q 000907 739 KN---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-------PLRQALVGLP 808 (1230)
Q Consensus 739 ~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~ 808 (1230)
+. ...+++.++||+|++.+++ .|++||+.++. ++.+. +.++++++..++. +-.|+.+|+.
T Consensus 413 i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~-----~~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 413 LRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN-----PDASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC-----CCCCH----HHHHHHHHHhCHHHHHHhcccccccccccC
Confidence 64 3567889999999999886 59999998851 12222 3345555555543 3347778765
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+ ..||||||||++|||||++||+||+||||||+||+.+++.+.+.|+++. +++|+|+++|+++ ....+|+
T Consensus 483 G-~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~ 552 (588)
T PRK11174 483 A-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQ 552 (588)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCE
Confidence 4 4699999999999999999999999999999999999999999998875 5899999999995 3466777
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=335.06 Aligned_cols=202 Identities=26% Similarity=0.309 Sum_probs=166.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+||++++||+++|+||||||||||||+|+|..++ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP--TKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC--CccEEEECCEEC
Confidence 378889888762 34699999999999999999999999999999999998765 379999999876
Q ss_pred Chh----cccceEEEEccCCccCCCCCHHHHHHHHHHhc--C-C-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 740 NQE----TFTRISGYCEQNDIHSPYVTVYESLLYSAWLR--L-S-SEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 740 ~~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~--~-~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
... ..++.++|++|++.+++.+||+||+.+..... . . ......+..++++++++.+|+.+..++.+ +
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----A 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----h
Confidence 421 12356999999999999999999998753210 0 0 00122334466889999999987777664 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+..|+
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~ 214 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDR 214 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 79999999999999999999999999999999999999999999999878999999999976 45566676
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=304.62 Aligned_cols=200 Identities=21% Similarity=0.274 Sum_probs=159.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--C-CeEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--R-GYITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~--~-~~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 488999998763 2469999999999999999999999999999999999642 1 12479999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP----LRQALVGL 807 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 807 (1230)
.+... ...++.++|++|++.+++. |+.||+.+...... .......++.+++.++.+++.+ ..++.
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 87632 1345679999999988875 99999987643221 1122223455677888888752 22322
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+..|+
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~ 232 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDR 232 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCE
Confidence 457999999999999999999999999999999999999999999999864 689999999986 45566676
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-32 Score=305.63 Aligned_cols=200 Identities=22% Similarity=0.292 Sum_probs=159.7
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--RG-YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~--~~-~~~G~i~~~g 736 (1230)
.+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 39 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 578999988763 2459999999999999999999999999999999999642 20 2479999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN----PLRQALVGL 807 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~ 807 (1230)
.++.. ..+++.++|++|++.+++. ||.||+.+....+. .......++.+.++++.+++. +..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 179 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDRLDKN--- 179 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhHhhCC---
Confidence 87532 1346689999999988875 99999998653321 112223345577888888874 222332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 180 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~ 250 (286)
T PRK14275 180 --ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDY 250 (286)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCE
Confidence 457999999999999999999999999999999999999999999999864 689999999987 45566676
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=315.72 Aligned_cols=196 Identities=23% Similarity=0.341 Sum_probs=164.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|++++|+. ...++|+|+|+++++||.+||+|+||||||||++.|+|..++ .+|+|.+||.++
T Consensus 336 ~l~~~~vsF~y~~-----------~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~--~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPG-----------QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP--QQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCC-----------CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCC--CCCeeeECCcCh
Confidence 6899999999863 234699999999999999999999999999999999998765 479999999875
Q ss_pred C---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCCC
Q 000907 740 N---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR-------QALVGLPG 809 (1230)
Q Consensus 740 ~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~~~~~~ 809 (1230)
. +..+++.+++++|...+|. -|+++||..+. ++ ..++.+.++++..||++.. |+.+|+.
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF~-~Tlr~NL~lA~-----~~----AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~- 471 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLFS-GTLRDNLRLAN-----PD----ASDEELWAALQQVGLEKLLESAPDGLNTWLGEG- 471 (573)
T ss_pred hhCChhhHHHHHhhhccchHHHH-HHHHHHHhhcC-----CC----CCHHHHHHHHHHcCHHHHHHhChhhhhchhccC-
Confidence 3 3446778999999887765 59999998752 11 2234577888888887654 4456654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.+.||||||||++|||+|++|.++++|||||.|||+.+++++++.|.+.+ +|+|+|++||+... .+.||+
T Consensus 472 G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHrL~~--le~~dr 541 (573)
T COG4987 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLRG--LERMDR 541 (573)
T ss_pred CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEeccccc--HhhcCE
Confidence 46799999999999999999999999999999999999999999998765 59999999999873 367887
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-32 Score=299.57 Aligned_cols=204 Identities=24% Similarity=0.330 Sum_probs=159.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--RG-YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~--~~-~~~G~i~~~g 736 (1230)
.++++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +. ..+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 478899988763 2469999999999999999999999999999999999753 21 1479999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
.+... ...++.++|++|++.+++ .|+.||+.+....+.. ...+..++.+.+.++.+++........ ...+.
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~ 147 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHL-HESAL 147 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHH-hcCcc
Confidence 87631 234568999999988887 6999999886443211 122222345667778877642111111 11245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++||++. .+.+..|+
T Consensus 148 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~ 216 (252)
T PRK14255 148 SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDK 216 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCE
Confidence 7999999999999999999999999999999999999999999999865 589999999986 45566676
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-33 Score=262.28 Aligned_cols=182 Identities=25% Similarity=0.342 Sum_probs=155.5
Q ss_pred CCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC---------hhcccceEEEEcc
Q 000907 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN---------QETFTRISGYCEQ 753 (1230)
Q Consensus 683 ~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---------~~~~~~~~~~v~q 753 (1230)
++..++|.||+++.+.||.+.++||||||||||++.|.=+..+ .+|+..+-|...+ ....|+.+|+|+|
T Consensus 12 yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p--~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfq 89 (242)
T COG4161 12 YGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQ 89 (242)
T ss_pred cccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCC--CCCeEEecccccccccCccHHHHHHHHHhhhhhhh
Confidence 4567899999999999999999999999999999999765443 3688888775321 1346788999999
Q ss_pred CCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000907 754 NDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSI 833 (1230)
Q Consensus 754 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~i 833 (1230)
+..++|.+||.|||.-+. +|. ...++++...+..++++.+.|.+.+|+. +-.|||||+|||+|||||+.+|++
T Consensus 90 qy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~-----plhlsggqqqrvaiaralmmkpqv 162 (242)
T COG4161 90 QYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRY-----PLHLSGGQQQRVAIARALMMEPQV 162 (242)
T ss_pred hhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccC-----ceecccchhhhHHHHHHHhcCCcE
Confidence 999999999999986542 222 2356666777889999999999999876 336999999999999999999999
Q ss_pred eEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 834 IFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 834 lllDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
|++||||++|||+-..++++++++++..|.|-+++||.-.
T Consensus 163 llfdeptaaldpeitaqvv~iikel~~tgitqvivthev~ 202 (242)
T COG4161 163 LLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE 202 (242)
T ss_pred EeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh
Confidence 9999999999999999999999999999999999999653
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=332.46 Aligned_cols=203 Identities=22% Similarity=0.331 Sum_probs=165.1
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++++.+|+|.++|.++.
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 56778887652 35699999999999999999999999999999999998764224799999998764
Q ss_pred hh----cccceEEEEccCCccCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCC
Q 000907 741 QE----TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSS-EVNSKTREMFVEEVMELVELNPLR-QALVGLPGVNGLS 814 (1230)
Q Consensus 741 ~~----~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~lS 814 (1230)
.. ..++.++|++|++.+++.+||.||+.+........ ....+...++++++++.+++.+.. ++. ++.||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCC
Confidence 31 13456999999999999999999998764322111 112333445688999999997654 333 34799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+..|+
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~ 210 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDT 210 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999999999878999999999986 45566777
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=332.35 Aligned_cols=202 Identities=29% Similarity=0.363 Sum_probs=167.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP--DAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEC
Confidence 378889988763 34699999999999999999999999999999999998765 379999999876
Q ss_pred Ch----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 740 NQ----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
.. ..+++.++|++|++.+++.+||.||+.+....+........+..++++++++.+++.+..++.+ ..|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL-----KYLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch-----hhCCH
Confidence 32 1245679999999999999999999988532111111123344566889999999986666553 47999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+..|+
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~ 209 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDA 209 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999999878999999999986 45566676
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=331.49 Aligned_cols=195 Identities=21% Similarity=0.318 Sum_probs=165.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP--DSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 488899998763 34699999999999999999999999999999999998765 379999999875
Q ss_pred Ch---hc-ccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 740 NQ---ET-FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~~---~~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
.. .. .++.+||++|++.+++.+||.||+.+... .....+++++++++.+++.+..++.+ ..|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~-------~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP-------KRQASMQKMKQLLAALGCQLDLDSSA-----GSLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc-------cchHHHHHHHHHHHHcCCCccccCCh-----hhCCH
Confidence 42 11 23468999999999999999999987521 11223456788999999987777654 47999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+..|+
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~ 209 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADR 209 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999999999878999999999986 45566777
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=286.47 Aligned_cols=152 Identities=26% Similarity=0.446 Sum_probs=133.9
Q ss_pred EeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh----hcccceEEEEccCC---ccCCC
Q 000907 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ----ETFTRISGYCEQND---IHSPY 760 (1230)
Q Consensus 688 iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~---~~~~~ 760 (1230)
+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|+. .+++.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP--ASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD 92 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence 89999999999999999999999999999999998765 37999999987643 23456799999984 57888
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCC
Q 000907 761 VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 840 (1230)
Q Consensus 761 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPt 840 (1230)
+|++||+.+... ||||||||++||+||+.+|++++|||||
T Consensus 93 ~t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~al~~~p~llllDEP~ 132 (182)
T cd03215 93 LSVAENIALSSL----------------------------------------LSGGNQQKVVLARWLARDPRVLILDEPT 132 (182)
T ss_pred CcHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCC
Confidence 999999876410 8999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 841 SGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 841 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+|||+.++..+.+.|++++++|+|+|+++|+++ ++.+..|+
T Consensus 133 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~ 173 (182)
T cd03215 133 RGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDR 173 (182)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999998777899999999975 55565665
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-32 Score=302.47 Aligned_cols=203 Identities=18% Similarity=0.221 Sum_probs=159.1
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEEC
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITIS 735 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~ 735 (1230)
..+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++
T Consensus 19 ~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 85 (274)
T PRK14265 19 SVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYR 85 (274)
T ss_pred ceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEEC
Confidence 3588999998763 346999999999999999999999999999999999975421 247999999
Q ss_pred CeecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 000907 736 GYPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGV 810 (1230)
Q Consensus 736 g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 810 (1230)
|.+... ..+++.++|++|+..+++. ||.||+.+....+. .. ...++.+++.++.+++......... ..+
T Consensus 86 g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~-~~~ 159 (274)
T PRK14265 86 DRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLK-EKG 159 (274)
T ss_pred CEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhc-CCc
Confidence 987531 2345789999999888874 99999987643321 11 1223445677888776421111111 124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+..|+
T Consensus 160 ~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~ 229 (274)
T PRK14265 160 TALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADW 229 (274)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCE
Confidence 57999999999999999999999999999999999999999999999864 799999999986 55666777
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-32 Score=301.48 Aligned_cols=208 Identities=24% Similarity=0.314 Sum_probs=163.8
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+.... .+ + ...++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~nl~~~~~~~~-~~--~-~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG-LS--G-KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP--SQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc-cc--c-ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecc
Confidence 67889988763100 00 0 01135799999999999999999999999999999999998764 4799999998753
Q ss_pred h------hcccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000907 741 Q------ETFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-PLRQALVGLPGVN 811 (1230)
Q Consensus 741 ~------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 811 (1230)
. ...++.++|++|++ .+.+..|+.|++.+..... .........+.++++++.+++. +..++. .+
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKR-----PP 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCC-----Cc
Confidence 2 12456799999997 4667889999987653211 1123334455688999999996 455554 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|+|++||++. .+.+..|+
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~ 221 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQR 221 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCE
Confidence 79999999999999999999999999999999999999999999998764 899999999986 45556676
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=299.30 Aligned_cols=196 Identities=26% Similarity=0.404 Sum_probs=156.1
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+.. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 69 (220)
T cd03245 3 IEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP--TSGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCeEEECCEEhH
Confidence 677888876531 124699999999999999999999999999999999998764 3799999998753
Q ss_pred h---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CCCCC
Q 000907 741 Q---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVG------LPGVN 811 (1230)
Q Consensus 741 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~------~~~~~ 811 (1230)
. ...++.++|++|++.+++ .|+.||+.+... ... .+.++++++.+++.+..+.... .....
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 139 (220)
T cd03245 70 QLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGR 139 (220)
T ss_pred HCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCc
Confidence 2 234567999999998876 699999876311 111 2235677888888766554321 11235
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||++.. + +..|+
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~-~-~~~d~ 207 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSL-L-DLVDR 207 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHH-H-HhCCE
Confidence 79999999999999999999999999999999999999999999998654 899999999863 3 66676
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-32 Score=302.77 Aligned_cols=200 Identities=23% Similarity=0.262 Sum_probs=158.3
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--C-CeEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--R-GYITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~--~-~~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 588999998763 2359999999999999999999999999999999999764 1 12579999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN----PLRQALVGL 807 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~ 807 (1230)
.+... ...++.++|++|++.+++ .|+.||+.+....+. .......++.+.++++.+++. +..+.
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~---- 163 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHD---- 163 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhc----
Confidence 87631 234667999999988887 499999988643221 112222234566777777543 22222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+..|+
T Consensus 164 -~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~ 235 (271)
T PRK14238 164 -NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDK 235 (271)
T ss_pred -CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCE
Confidence 2457999999999999999999999999999999999999999999999865 799999999986 45566676
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-32 Score=302.01 Aligned_cols=202 Identities=21% Similarity=0.285 Sum_probs=158.8
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC--C-eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR--G-YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~--~-~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|...+ . +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 478899988763 24699999999999999999999999999999999997532 1 2479999999
Q ss_pred eecC-----hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 737 YPKN-----QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 737 ~~~~-----~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
.++. ....++.++|++|++.+++ .|+.||+.+....+. .. ...++.++++++.+++.+..+... ...+.
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKL-KQSGL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHh-cCCcc
Confidence 8753 1234667999999988887 499999987643221 11 123345667778877743111111 11245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+..|+
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~ 219 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDM 219 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCE
Confidence 7999999999999999999999999999999999999999999999865 589999999986 56677777
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=303.23 Aligned_cols=195 Identities=24% Similarity=0.386 Sum_probs=148.5
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+.. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (237)
T cd03252 1 ITFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP--ENGRVLVDGHDLA 67 (237)
T ss_pred CEEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCeehH
Confidence 356788776531 124699999999999999999999999999999999998765 3799999998753
Q ss_pred h---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCCCC
Q 000907 741 Q---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRE-----MFVEEVMELV--ELNPLRQALVGLPGV 810 (1230)
Q Consensus 741 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l--~l~~~~~~~~~~~~~ 810 (1230)
. ..+++.++|++|++.+++ .||.||+.+... ........ ...+++++.+ ++....+. .+
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----~~ 136 (237)
T cd03252 68 LADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGE-----QG 136 (237)
T ss_pred hcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhc-----CC
Confidence 2 234677999999987765 699999976421 11111111 0112333333 33332222 24
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||+++|++.. + +..|+
T Consensus 137 ~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~-~-~~~d~ 205 (237)
T cd03252 137 AGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLST-V-KNADR 205 (237)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-HhCCE
Confidence 5799999999999999999999999999999999999999999999986 48999999999973 3 34565
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=298.23 Aligned_cols=201 Identities=22% Similarity=0.297 Sum_probs=159.6
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--e--EEEEEEEC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG--Y--ITGNITIS 735 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~--~--~~G~i~~~ 735 (1230)
.+.++++++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++. . +.|++.++
T Consensus 10 ~i~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~ 76 (257)
T PRK14246 10 VFNISRLYLYI-------------NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYF 76 (257)
T ss_pred heeeeeEEEec-------------CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEEC
Confidence 37888888765 3456999999999999999999999999999999999986542 1 23555565
Q ss_pred CeecC---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCC
Q 000907 736 GYPKN---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP----LRQALVGLP 808 (1230)
Q Consensus 736 g~~~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~ 808 (1230)
|.+.. ....++.++|++|++.+++.+|++||+.+...... .....+..+.++++++.+++.+ ..+..
T Consensus 77 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 150 (257)
T PRK14246 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP---- 150 (257)
T ss_pred CcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC----
Confidence 65432 22346789999999999999999999988643221 1123334456788999999864 22332
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+..||+|||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+..|+
T Consensus 151 -~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~ 221 (257)
T PRK14246 151 -ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADY 221 (257)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCE
Confidence 457999999999999999999999999999999999999999999998864 699999999986 45566776
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=297.57 Aligned_cols=198 Identities=23% Similarity=0.310 Sum_probs=157.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. ++.+|+|+|+++++||++||+|+||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 478899988763 2469999999999999999999999999999999999721112479999999875
Q ss_pred Ch---hcccc-eEEEEccCCccCCCCCHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 000907 740 NQ---ETFTR-ISGYCEQNDIHSPYVTVYESLLYSAWLRLS----SEVNSKTREMFVEEVMELVELN-PLRQALVGLPGV 810 (1230)
Q Consensus 740 ~~---~~~~~-~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~----~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 810 (1230)
.. ...++ .++|++|++.+++.+|+.+++.+....... ......+..++++++++.+++. +..++..+
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 42 12222 478999999999999999999875432110 0111222345678889999986 34444432
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCH
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSI 874 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~ 874 (1230)
.+||||||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++..
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~ 213 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL 213 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 2499999999999999999999999999999999999999999999988779999999999763
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=298.03 Aligned_cols=204 Identities=23% Similarity=0.299 Sum_probs=159.8
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKT--RG-YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~--~~-~~~G~i~~~g 736 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|... +. +.+|+|.+||
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 467888887652 3469999999999999999999999999999999999743 11 2479999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
.++.. ...++.++|++|++.+++. |+.||+.+...... ....+..++++.+.++.+++.+...... +....
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 145 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKL-DKSAL 145 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcc
Confidence 87532 2346689999999988875 99999987643221 1122334466788899988854221111 12245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||+++|++. ++.+..|+
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~~~~~~ 214 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQ-QATRVSKY 214 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEECCHH-HHHhhcCE
Confidence 799999999999999999999999999999999999999999999985 4899999999986 44455554
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=298.70 Aligned_cols=200 Identities=26% Similarity=0.281 Sum_probs=158.2
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee-
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP- 738 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~- 738 (1230)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP--DHGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEEecccc
Confidence 377888888763 24589999999999999999999999999999999998765 47999999875
Q ss_pred ----cCh---h----cccceEEEEccCCc--cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccc
Q 000907 739 ----KNQ---E----TFTRISGYCEQNDI--HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQAL 804 (1230)
Q Consensus 739 ----~~~---~----~~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~ 804 (1230)
... . ..++.++|++|++. +.+.+|+.||+.+..... .. .......+.++++++.+++.+ ..++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-GA-RHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-cc-cchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 321 1 12356899999974 456679999987543211 11 111233456788999999963 45544
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 805 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 805 ~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++.||||||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++ |.|+|+++|++. .+.+..|+
T Consensus 146 -----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~ 218 (253)
T TIGR02323 146 -----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQR 218 (253)
T ss_pred -----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 3579999999999999999999999999999999999999999999998654 899999999986 45555676
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.4e-32 Score=283.07 Aligned_cols=160 Identities=28% Similarity=0.441 Sum_probs=137.7
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.++. +++.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~ 68 (173)
T cd03246 2 EVENVSFRYPG-----------AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP--TSGRVRLDGADISQ 68 (173)
T ss_pred EEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCeEEECCEEccc
Confidence 56777776531 124599999999999999999999999999999999998765 37999999987532
Q ss_pred ---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 742 ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 742 ---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
..+++.++|++|++.+++ .|++||+ ||||||
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~~~l---------------------------------------------LS~G~~ 102 (173)
T cd03246 69 WDPNELGDHVGYLPQDDELFS-GSIAENI---------------------------------------------LSGGQR 102 (173)
T ss_pred CCHHHHHhheEEECCCCcccc-CcHHHHC---------------------------------------------cCHHHH
Confidence 345678999999988777 4998886 899999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. .+ +..|+
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~ 164 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADR 164 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCE
Confidence 9999999999999999999999999999999999999998777999999999985 33 45665
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.1e-32 Score=297.83 Aligned_cols=184 Identities=23% Similarity=0.329 Sum_probs=153.2
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
-++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~~~-- 66 (251)
T PRK09544 4 LVSLENVSVSFG-------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP--DEGVIKRNGK-- 66 (251)
T ss_pred EEEEeceEEEEC-------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCc--
Confidence 378889888763 24699999999999999999999999999999999998765 4799999872
Q ss_pred ChhcccceEEEEccCCccCCCC--CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000907 740 NQETFTRISGYCEQNDIHSPYV--TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~~~~~l--tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 817 (1230)
..++|++|++.+++.+ |+.+++.+. .... ++.+.++++.+++.+..++.+ ..|||||
T Consensus 67 ------~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~~----~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq 125 (251)
T PRK09544 67 ------LRIGYVPQKLYLDTTLPLTVNRFLRLR------PGTK----KEDILPALKRVQAGHLIDAPM-----QKLSGGE 125 (251)
T ss_pred ------cCEEEeccccccccccChhHHHHHhcc------cccc----HHHHHHHHHHcCChHHHhCCh-----hhCCHHH
Confidence 3589999998777653 777776431 1111 234678899999987776653 4799999
Q ss_pred HHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 818 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 818 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||++||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+..|+
T Consensus 126 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~ 190 (251)
T PRK09544 126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDE 190 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCE
Confidence 99999999999999999999999999999999999999998765 899999999987 55566776
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5e-32 Score=330.19 Aligned_cols=190 Identities=24% Similarity=0.309 Sum_probs=158.1
Q ss_pred ceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh----hcccceEEEEccCCccCCC
Q 000907 685 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ----ETFTRISGYCEQNDIHSPY 760 (1230)
Q Consensus 685 ~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~~~~~~ 760 (1230)
++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.. ...++.++|++|++.+++.
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK--DSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 45799999999999999999999999999999999998765 37999999987642 1235679999999988899
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCC
Q 000907 761 VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 840 (1230)
Q Consensus 761 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPt 840 (1230)
+||.||+.+.............+..++++++++.+++.+..++.+ ..|||||||||+||+||+.+|++|+|||||
T Consensus 88 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt 162 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPT 162 (491)
T ss_pred CCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 999999987532110101123333456889999999987766654 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 841 SGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 841 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+|||+.++..+.+.|++++++|+|||++||++. ++.+..|+
T Consensus 163 ~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~ 203 (491)
T PRK10982 163 SSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDE 203 (491)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999999999878999999999986 45566676
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-32 Score=299.76 Aligned_cols=199 Identities=24% Similarity=0.361 Sum_probs=156.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++. .+++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~~----------~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 78 (226)
T cd03248 11 IVKFQNVTFAYPT----------RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP--QGGQVLLDGKPI 78 (226)
T ss_pred eEEEEEEEEEeCC----------CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCcEEEECCCch
Confidence 5889999988741 1123599999999999999999999999999999999998765 479999999865
Q ss_pred Ch---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHHHc--CCCccccccccCCCCC
Q 000907 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNS---KTREMFVEEVMELV--ELNPLRQALVGLPGVN 811 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~---~~~~~~~~~~l~~l--~l~~~~~~~~~~~~~~ 811 (1230)
.. ...++.++|++|++.+++ .||+||+.+.... ..... ......+++.++.+ |+.+..+.. ++
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~---~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~-----~~ 149 (226)
T cd03248 79 SQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQS---CSFECVKEAAQKAHAHSFISELASGYDTEVGEK-----GS 149 (226)
T ss_pred HHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCC---CCHHHHHHHHHHcCcHHHHHhccccccchhhcC-----CC
Confidence 32 234567999999988776 6999999764321 11000 11112346777777 666554443 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||++.. + +..|+
T Consensus 150 ~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~ 217 (226)
T cd03248 150 QLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLST-V-ERADQ 217 (226)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHH-H-HhCCE
Confidence 7999999999999999999999999999999999999999999999865 6899999999873 3 33665
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-32 Score=300.28 Aligned_cols=194 Identities=26% Similarity=0.325 Sum_probs=150.1
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+.. .++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~ 68 (234)
T cd03251 2 EFKNVTFRYPG-----------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV--DSGRILIDGHDVRD 68 (234)
T ss_pred EEEEEEEEeCC-----------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC--CCCEEEECCEEhhh
Confidence 56777776631 113599999999999999999999999999999999998765 47999999987532
Q ss_pred ---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCCCCC
Q 000907 742 ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREM-----FVEEVMELV--ELNPLRQALVGLPGVN 811 (1230)
Q Consensus 742 ---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l--~l~~~~~~~~~~~~~~ 811 (1230)
...++.++|++|++.+++ .||+||+.+... ........+ .+++.++.+ ++.+..+.. +.
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~ 137 (234)
T cd03251 69 YTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRP-----GATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GV 137 (234)
T ss_pred CCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CC
Confidence 234567999999988876 699999976421 111111111 134444444 444443332 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++. +|+|||++||++. ++. ..|+
T Consensus 138 ~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~~-~~d~ 205 (234)
T cd03251 138 KLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLS-TIE-NADR 205 (234)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HHh-hCCE
Confidence 799999999999999999999999999999999999999999999986 4899999999996 333 3666
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.5e-32 Score=338.75 Aligned_cols=198 Identities=23% Similarity=0.303 Sum_probs=163.6
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++++|++|+++. +++.+|+|+|+++++||.+||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 340 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~ 406 (582)
T PRK11176 340 GDIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI--DEGEILLDGHD 406 (582)
T ss_pred CeEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC--CCceEEECCEE
Confidence 36999999998842 234699999999999999999999999999999999998875 37999999998
Q ss_pred cCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCC
Q 000907 739 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-------PLRQALVGLP 808 (1230)
Q Consensus 739 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~ 808 (1230)
.+. ..+++.++||+|++.+++ .|++||+.++. +...+ ++.++++++..++. +-.|+.+|..
T Consensus 407 i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~ 477 (582)
T PRK11176 407 LRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYS----REQIEEAARMAYAMDFINKMDNGLDTVIGEN 477 (582)
T ss_pred hhhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCC----HHHHHHHHHHhCcHHHHHhcccccCceeCCC
Confidence 643 457788999999999886 69999998641 11122 23356666666643 3357777765
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+ +.||||||||++|||||+++|+||+||||||+||+.++..+.+.|+++. +++|+|++||+++ ....+|+
T Consensus 478 g-~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~ 547 (582)
T PRK11176 478 G-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADE 547 (582)
T ss_pred C-CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCE
Confidence 4 5799999999999999999999999999999999999999999998874 5799999999995 4567887
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-31 Score=302.72 Aligned_cols=206 Identities=25% Similarity=0.320 Sum_probs=161.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC---CeEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR---GYITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~g 736 (1230)
.+.++|+++.+. ++.+|+++|+++++||+++|+|+|||||||||++|+|..++ .+.+|+|.++|
T Consensus 45 ~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g 111 (305)
T PRK14264 45 KLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111 (305)
T ss_pred eEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 588999988763 24699999999999999999999999999999999998642 13479999999
Q ss_pred eecCh-----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCC---------CC-CHHHHHHHHHHHHHHcCCCccc
Q 000907 737 YPKNQ-----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSS---------EV-NSKTREMFVEEVMELVELNPLR 801 (1230)
Q Consensus 737 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~---------~~-~~~~~~~~~~~~l~~l~l~~~~ 801 (1230)
.++.. ...++.++|++|++.+++ .||+||+.+....+... .. .....++.++++++.+++.+..
T Consensus 112 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 112 QDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred EEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 87532 234567999999988887 59999999864322100 01 1122345678889999885322
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHh
Q 000907 802 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 881 (1230)
Q Consensus 802 ~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd 881 (1230)
+.... ..++.||||||||++||+||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+..|
T Consensus 191 ~~~~~-~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d 267 (305)
T PRK14264 191 NDRLD-DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISD 267 (305)
T ss_pred hHHhc-CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcC
Confidence 22211 12467999999999999999999999999999999999999999999999876 589999999987 4556667
Q ss_pred c
Q 000907 882 A 882 (1230)
Q Consensus 882 ~ 882 (1230)
+
T Consensus 268 ~ 268 (305)
T PRK14264 268 Q 268 (305)
T ss_pred E
Confidence 6
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-32 Score=345.16 Aligned_cols=194 Identities=28% Similarity=0.371 Sum_probs=162.1
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++++|++++|+. +++.+|+|+|++++|||.+||+|+||||||||+|+|+|..++ .+|+|.+||.+
T Consensus 450 ~~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 516 (686)
T TIGR03797 450 GAIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP--ESGSVFYDGQD 516 (686)
T ss_pred ceEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEE
Confidence 36999999999842 234699999999999999999999999999999999998875 37999999998
Q ss_pred cC---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000907 739 KN---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLP 808 (1230)
Q Consensus 739 ~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 808 (1230)
+. ...+++.+|||+|++.+++ .|++||+.++. + .+ ++.+.++++..++.+ -.|+.+|+.
T Consensus 517 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~----~--~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~ 585 (686)
T TIGR03797 517 LAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA----P--LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEG 585 (686)
T ss_pred cCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC----C--CC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 64 3567889999999999886 59999998741 1 12 234566777776654 346667654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+ .+||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++ ++|+|+++|+++ ..+.+|+
T Consensus 586 G-~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~ 653 (686)
T TIGR03797 586 G-GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADR 653 (686)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCE
Confidence 4 579999999999999999999999999999999999999999999875 589999999985 3466777
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-31 Score=296.44 Aligned_cols=196 Identities=27% Similarity=0.325 Sum_probs=152.3
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+..+.+|+|.++|.+..
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 56788887663 34699999999999999999999999999999999998421124799999998753
Q ss_pred h---hc-ccceEEEEccCCccCCCCCHHHHHHHHHH-hcCC-C--CCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 000907 741 Q---ET-FTRISGYCEQNDIHSPYVTVYESLLYSAW-LRLS-S--EVNSKTREMFVEEVMELVELN-PLRQALVGLPGVN 811 (1230)
Q Consensus 741 ~---~~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~-~~~~-~--~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 811 (1230)
. .. .++.++|++|++.+++.+|+.+++.+... ++.. . ........+++++.++.+++. +..+..+ .+
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NV 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CC
Confidence 2 11 23568999999988888887777654321 1100 0 011122345678888999985 3444332 12
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++.
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~ 206 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR 206 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 69999999999999999999999999999999999999999999998877899999999976
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.5e-32 Score=336.40 Aligned_cols=195 Identities=24% Similarity=0.339 Sum_probs=163.5
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++++|+++.++. ++.+|+|+|+++++||.+||+|+||||||||+|+|+|..+|. +|+|.+||.+
T Consensus 339 ~~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~--~G~I~idg~~ 404 (592)
T PRK10790 339 GRIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT--EGEIRLDGRP 404 (592)
T ss_pred CeEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC--CceEEECCEE
Confidence 36999999998841 235999999999999999999999999999999999988763 7999999998
Q ss_pred cC---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000907 739 KN---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLP 808 (1230)
Q Consensus 739 ~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 808 (1230)
++ ...+++.++||+|++.+++. |++||+.++. ..+ ++.++++++.+|+.+ -.|+.+|..
T Consensus 405 i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~ 473 (592)
T PRK10790 405 LSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DIS----EEQVWQALETVQLAELARSLPDGLYTPLGEQ 473 (592)
T ss_pred hhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 64 35678899999999999885 9999998752 112 234677777777653 345666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+ ..||||||||++|||||+++|+||+||||||+||+.+++.+.+.|+++. +++|+|+++|+++ ....+|+
T Consensus 474 g-~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~-~~~tvIivtHr~~--~l~~~D~ 543 (592)
T PRK10790 474 G-NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR-EHTTLVVIAHRLS--TIVEADT 543 (592)
T ss_pred C-CCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCE
Confidence 3 4699999999999999999999999999999999999999999999875 4799999999984 4566787
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=296.80 Aligned_cols=182 Identities=24% Similarity=0.350 Sum_probs=152.8
Q ss_pred EeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh---hcccceEEEEccCCccCCCCCHH
Q 000907 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETFTRISGYCEQNDIHSPYVTVY 764 (1230)
Q Consensus 688 iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~ 764 (1230)
+|+|+|+++++||+++|+||||||||||+++|+|..++ +|+|.++|.++.. ...++.++|++|++.+++.+|+.
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC---CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 79999999999999999999999999999999998642 7999999987642 23345689999998888889999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhh-------CCCEeEEe
Q 000907 765 ESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVA-------NPSIIFMD 837 (1230)
Q Consensus 765 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~-------~p~illlD 837 (1230)
||+.+.... ........+.++++++.+++.+..++.+ +.||||||||++||+||+. +|++|+||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999875211 1122333456789999999987666553 4799999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 838 EPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 838 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||+|||+.++..+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~ 202 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADR 202 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCE
Confidence 999999999999999999998777999999999986 45566676
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.7e-32 Score=310.47 Aligned_cols=202 Identities=27% Similarity=0.384 Sum_probs=174.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
-++++|++.++ +..++|+||||++++||++||+|.||||||||+|+|+|..++ .+|+|.+||++.
T Consensus 8 ll~~~~i~K~F-------------ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p--~~G~I~~~G~~~ 72 (500)
T COG1129 8 LLELRGISKSF-------------GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPP--DSGEILIDGKPV 72 (500)
T ss_pred eeeeecceEEc-------------CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccC--CCceEEECCEEc
Confidence 46777777655 567899999999999999999999999999999999998875 489999999986
Q ss_pred Ch----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 000907 740 NQ----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRL-SSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 814 (1230)
Q Consensus 740 ~~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 814 (1230)
.. .....-++.|+|+..+.|++||.||+.++...+. ..-.+.+...++..++++.+++....++.++ .||
T Consensus 73 ~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~Ls 147 (500)
T COG1129 73 AFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DLS 147 (500)
T ss_pred cCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hCC
Confidence 42 2345678999999999999999999987654433 1234556667788999999999644666654 699
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||.|.|||||..+++||+||||||+|+....+.+.+.+++++++|.+||++||... |+|+..|+
T Consensus 148 iaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~Dr 214 (500)
T COG1129 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADR 214 (500)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCE
Confidence 99999999999999999999999999999999999999999999999999999999886 89999998
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-31 Score=296.78 Aligned_cols=205 Identities=22% Similarity=0.255 Sum_probs=160.0
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC--C-eEEEEEEEC
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR--G-YITGNITIS 735 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~--~-~~~G~i~~~ 735 (1230)
..++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|...+ + ..+|+|.++
T Consensus 15 ~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~ 81 (265)
T PRK14252 15 QKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILH 81 (265)
T ss_pred ceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEc
Confidence 3588999998763 24699999999999999999999999999999999998653 1 147999999
Q ss_pred CeecC-------hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000907 736 GYPKN-------QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLP 808 (1230)
Q Consensus 736 g~~~~-------~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 808 (1230)
|.+.. ...+++.++|++|++.+++. |++||+.+...... .......++.+++.++.+++.+....... .
T Consensus 82 g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~ 157 (265)
T PRK14252 82 PDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRG--VKRRSILEERVENALRNAALWDEVKDRLG-D 157 (265)
T ss_pred CccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcC--CChHHHHHHHHHHHHHHcCCchhhhHHHh-C
Confidence 97642 12346679999999988885 99999987643221 11112223556778888877421111111 1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
....||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+..|+
T Consensus 158 ~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~ 229 (265)
T PRK14252 158 LAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDY 229 (265)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCE
Confidence 2457999999999999999999999999999999999999999999999865 699999999986 45566776
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.1e-32 Score=334.77 Aligned_cols=197 Identities=27% Similarity=0.418 Sum_probs=164.4
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++++|+++.++. +++.+|+|+|++++|||.+||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 337 ~~i~~~~v~f~y~~-----------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p--~~G~I~i~g~~ 403 (574)
T PRK11160 337 VSLTLNNVSFTYPD-----------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP--QQGEILLNGQP 403 (574)
T ss_pred CeEEEEEEEEECCC-----------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEE
Confidence 46999999998841 124699999999999999999999999999999999998775 37999999998
Q ss_pred cCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc------ccccccCCC
Q 000907 739 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL------RQALVGLPG 809 (1230)
Q Consensus 739 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~------~~~~~~~~~ 809 (1230)
+.. ..+++.++||+|++.+++ .|++||+.++. + +. .++.++++++..++.+. .|+.+|..
T Consensus 404 i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~-~~----~~~~i~~al~~~~l~~~i~~p~GldT~vge~- 472 (574)
T PRK11160 404 IADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA----P-NA----SDEALIEVLQQVGLEKLLEDDKGLNAWLGEG- 472 (574)
T ss_pred hhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC----C-cc----CHHHHHHHHHHcCCHHHHcCccccCchhcCC-
Confidence 643 467788999999998886 59999998742 1 11 23446778888887654 35666654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
...||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++. +++|+|+++|+++. ...+|+
T Consensus 473 g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~--~~~~d~ 542 (574)
T PRK11160 473 GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG--LEQFDR 542 (574)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH--HHhCCE
Confidence 35699999999999999999999999999999999999999999999875 58999999999963 345776
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-31 Score=308.97 Aligned_cols=208 Identities=22% Similarity=0.281 Sum_probs=173.3
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--eEEEEEEECCe
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG--YITGNITISGY 737 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~--~~~G~i~~~g~ 737 (1230)
-++++|++..+... .+...+++||||++.+||++||+|.|||||||+.++|.|..+.+ ..+|+|.++|.
T Consensus 5 lL~V~nL~v~~~~~---------~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~ 75 (539)
T COG1123 5 LLEVENLTVEFATD---------GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75 (539)
T ss_pred eEEEeceEEEEecC---------CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCc
Confidence 48899999887532 22357999999999999999999999999999999999987654 25799999998
Q ss_pred ecC---h----hcccceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000907 738 PKN---Q----ETFTRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLP 808 (1230)
Q Consensus 738 ~~~---~----~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 808 (1230)
++. . ..+.+.++|++|++ .+.|.+|+.+.+.-....+.. ...++..+++.++++..||.+.... +.
T Consensus 76 dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~~ 150 (539)
T COG1123 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---DR 150 (539)
T ss_pred chhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---cc
Confidence 642 1 12446899999996 467778999988776655542 2366777889999999999887655 33
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.+++||||||||+.||+||+.+|++|++||||++||+.++.+|+++|+++.+ .|.++|++|||+. -+-+.-|+
T Consensus 151 yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDr 224 (539)
T COG1123 151 YPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADR 224 (539)
T ss_pred CCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCe
Confidence 4678999999999999999999999999999999999999999999999974 5999999999997 45667787
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-32 Score=298.70 Aligned_cols=196 Identities=24% Similarity=0.359 Sum_probs=150.9
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+. +.+.+++|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYD------------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP--QKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecC------------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEeH
Confidence 467888888763 123599999999999999999999999999999999998765 379999999875
Q ss_pred Ch---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc------cCCCC
Q 000907 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALV------GLPGV 810 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~------~~~~~ 810 (1230)
.. ..+++.++|++|++.+++. |+.||+.+... .... ..+++.++.+++.+..+... .....
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~-----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRP-----NATD----EEVIEAAKEAGAHDFIMKLPNGYDTVLGENG 137 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCC-----CCCH----HHHHHHHHHhChHHHHHhCcccccCHhhcCC
Confidence 32 2346679999999887775 99999976421 1111 12334444444433222110 01124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +|+|||++||++.. + +..|+
T Consensus 138 ~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~ 206 (229)
T cd03254 138 GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-I-KNADK 206 (229)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-hhCCE
Confidence 6799999999999999999999999999999999999999999999985 58999999999863 3 34565
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.6e-32 Score=299.93 Aligned_cols=195 Identities=25% Similarity=0.378 Sum_probs=147.3
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+.. .+++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~~----------~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~ 69 (238)
T cd03249 2 EFKNVSFRYPS----------RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP--TSGEILLDGVDIRD 69 (238)
T ss_pred eEEEEEEecCC----------CCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC--CCCEEEECCEehhh
Confidence 56777776531 1124699999999999999999999999999999999998764 47999999987532
Q ss_pred ---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCCCCC
Q 000907 742 ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREM-----FVEEVMELV--ELNPLRQALVGLPGVN 811 (1230)
Q Consensus 742 ---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l--~l~~~~~~~~~~~~~~ 811 (1230)
...++.++|++|++.+++ .||+||+.+.... .......+ .+.+.++.+ ++....+. .++
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~ 138 (238)
T cd03249 70 LNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPD-----ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGE-----RGS 138 (238)
T ss_pred cCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCC-----CCHHHHHHHHHHcChHHHHHhhccccceeecc-----CCc
Confidence 234567999999988776 6999999764211 11111110 011222222 22222222 245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++||++|+.+|++|+|||||+|||+.+++.+.+.|++++ +|+|||+++|++.. + +..|+
T Consensus 139 ~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~-~-~~~d~ 206 (238)
T cd03249 139 QLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLST-I-RNADL 206 (238)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-hhCCE
Confidence 799999999999999999999999999999999999999999999986 79999999999863 3 35676
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-32 Score=333.90 Aligned_cols=196 Identities=28% Similarity=0.431 Sum_probs=162.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|++++++. +++.+|+|+|++++|||.+||+||||||||||+|+|+|..++. +|+|.+||.++
T Consensus 320 ~i~~~~v~f~y~~-----------~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~--~G~I~~~g~~i 386 (529)
T TIGR02857 320 SLEFSGLSVAYPG-----------RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT--EGSIAVNGVPL 386 (529)
T ss_pred eEEEEEEEEECCC-----------CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEeh
Confidence 6999999999852 1246999999999999999999999999999999999988763 79999999986
Q ss_pred C---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCC
Q 000907 740 N---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLPG 809 (1230)
Q Consensus 740 ~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~ 809 (1230)
. ...+++.++||+|++.+++ .|++||+.++. + ..+ ++.++++++..++.+ -.|+.+|..+
T Consensus 387 ~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~-~~~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g 456 (529)
T TIGR02857 387 ADADADSWRDQIAWVPQHPFLFA-GTIAENIRLAR----P-DAS----DAEIRRALERAGLDEFVAALPQGLDTLIGEGG 456 (529)
T ss_pred hhCCHHHHHhheEEEcCCCcccC-cCHHHHHhccC----C-CCC----HHHHHHHHHHcCcHHHHHhCcccccchhcccc
Confidence 4 3467788999999998886 69999998742 1 112 233566677766653 2466666543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
..||||||||++|||||+++|++++||||||+||+.+++.+.+.++++. +++|+|+++|+++ ....+|+
T Consensus 457 -~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ 525 (529)
T TIGR02857 457 -AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADR 525 (529)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCE
Confidence 4699999999999999999999999999999999999999999998874 6899999999985 3456675
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=326.28 Aligned_cols=198 Identities=23% Similarity=0.294 Sum_probs=160.4
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC--CCCeEEEEEEECC--
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRK--TRGYITGNITISG-- 736 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~--~~~~~~G~i~~~g-- 736 (1230)
++++|+++++ +++.+|+|+|+++++||+++|+|||||||||||++|+|.. ++ .+|+|.++|
T Consensus 1 l~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p--~~G~i~~~~~~ 65 (520)
T TIGR03269 1 IEVKNLTKKF-------------DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP--TSGRIIYHVAL 65 (520)
T ss_pred CEEEEEEEEE-------------CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCC--CceEEEEeccc
Confidence 3567787765 2356999999999999999999999999999999999975 33 479999872
Q ss_pred ---------------------eec----------Ch---hcccceEEEEccC-CccCCCCCHHHHHHHHHHhcCCCCCCH
Q 000907 737 ---------------------YPK----------NQ---ETFTRISGYCEQN-DIHSPYVTVYESLLYSAWLRLSSEVNS 781 (1230)
Q Consensus 737 ---------------------~~~----------~~---~~~~~~~~~v~q~-~~~~~~ltv~e~l~~~~~~~~~~~~~~ 781 (1230)
.++ .. ...++.++|++|+ +.+++.+||+|++.+..... ....
T Consensus 66 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~ 142 (520)
T TIGR03269 66 CEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEG 142 (520)
T ss_pred cccccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCH
Confidence 211 00 1235679999997 67888899999998865432 1233
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 000907 782 KTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD- 860 (1230)
Q Consensus 782 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~- 860 (1230)
.+.+++++++++.+|+.+..++.+ +.||||||||++||+||+.+|++|||||||+|||+.++..+.+.|+++++
T Consensus 143 ~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 217 (520)
T TIGR03269 143 KEAVGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKA 217 (520)
T ss_pred HHHHHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 444567899999999987766653 57999999999999999999999999999999999999999999999865
Q ss_pred CCCEEEEEecCCCHHHHHHHhc
Q 000907 861 TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 861 ~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.|+|||++||++. .+.+..|+
T Consensus 218 ~g~tviivtHd~~-~~~~~~d~ 238 (520)
T TIGR03269 218 SGISMVLTSHWPE-VIEDLSDK 238 (520)
T ss_pred cCcEEEEEeCCHH-HHHHhcCE
Confidence 4899999999986 34556676
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-31 Score=308.04 Aligned_cols=176 Identities=20% Similarity=0.299 Sum_probs=146.3
Q ss_pred eeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChhcccceEEEEccCCccCCCCCHHH
Q 000907 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYE 765 (1230)
Q Consensus 686 ~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e 765 (1230)
+.+|+|+||++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+. ++.+...+.+.+|++|
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P--~sGeI~I~G~~~----------~i~~~~~l~~~lTV~E 104 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP--NKGTVDIKGSAA----------LIAISSGLNGQLTGIE 104 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CceEEEECCEee----------eEEeccccCCCCcHHH
Confidence 4699999999999999999999999999999999998765 379999999641 1222344567789999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCH
Q 000907 766 SLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 845 (1230)
Q Consensus 766 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~ 845 (1230)
++.+..... .....+..+.++++++.+++.+..+..+ +.||||||||++|||||+.+|++|+|||||+|||+
T Consensus 105 nL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~ 176 (549)
T PRK13545 105 NIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQ 176 (549)
T ss_pred HHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 998754332 1233344456788999999987776653 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 846 RAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 846 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.++..+.+.|++++++|+|||+++|++. .+.+..|+
T Consensus 177 ~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~Dr 212 (549)
T PRK13545 177 TFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTK 212 (549)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCE
Confidence 9999999999998777999999999986 55566676
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=297.31 Aligned_cols=195 Identities=23% Similarity=0.313 Sum_probs=157.8
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++. +...+|+|+|++|++||+++|+||||||||||+++|+|..+ .+|+|.++|.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 4789999988741 23459999999999999999999999999999999999875 269999999876
Q ss_pred Ch---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC------CCC
Q 000907 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGL------PGV 810 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~------~~~ 810 (1230)
.. ..+++.++|++|++.+++ .|++||+.... ... ++.+.+.++.+||.+..+...+. ++.
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 42 345678999999999887 49999996321 112 23456778888887655543321 123
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
..||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++. +++|||+++|++. .+. ..|+
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~-~~dr 205 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AML-ECQR 205 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HHH-hCCE
Confidence 4699999999999999999999999999999999999999999999874 5899999999985 444 3676
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-32 Score=253.29 Aligned_cols=181 Identities=24% Similarity=0.292 Sum_probs=156.2
Q ss_pred CceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-eEEEEEEECCeecCh-hcccceEEEEccCCccCCCC
Q 000907 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG-YITGNITISGYPKNQ-ETFTRISGYCEQNDIHSPYV 761 (1230)
Q Consensus 684 ~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~l 761 (1230)
+++.+|-|+|++|.+||++-|||||||||||||..+.|...+. ..+|++++|+++++. ..-+|.+|+.+||+.+||.+
T Consensus 13 ~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphl 92 (213)
T COG4136 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHL 92 (213)
T ss_pred CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccccc
Confidence 4578999999999999999999999999999999999976543 578999999998764 34578999999999999999
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCC
Q 000907 762 TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 841 (1230)
Q Consensus 762 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPts 841 (1230)
+|.+|+.|+. |.......++..++..++..||....+.. +..||||||-|+++-|+|+..|+.++||||+|
T Consensus 93 sVg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~d-----P~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS 163 (213)
T COG4136 93 SVGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQD-----PATLSGGQRARVALLRALLAQPKALLLDEPFS 163 (213)
T ss_pred ccccceEEec----CcccccHHHHhhHHHHHHHhccchhhhcC-----hhhcCcchHHHHHHHHHHHhCcceeeeCCchh
Confidence 9999999863 44444556777789999999999877654 35799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHH-HHhCCCEEEEEecCCC
Q 000907 842 GLDARAAAVVMRTVRN-TVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 842 gLD~~~~~~i~~~l~~-~~~~g~tvi~~~H~~~ 873 (1230)
.||..-+.++.+.+-. ....|.-+|.+|||..
T Consensus 164 ~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 164 RLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 9999999999886644 4456999999999864
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-32 Score=301.23 Aligned_cols=209 Identities=28% Similarity=0.412 Sum_probs=171.3
Q ss_pred CCcccCCCCceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEE
Q 000907 650 RGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT 729 (1230)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~ 729 (1230)
..+.+|.+...++.+++++..+ ..++.+|+|+||.+.+||.+||+||||||||||.|+|.|.-++ .+
T Consensus 324 ~~m~LP~P~g~L~Ve~l~~~PP-----------g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p--~~ 390 (580)
T COG4618 324 ERMPLPAPQGALSVERLTAAPP-----------GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP--TS 390 (580)
T ss_pred CCCCCCCCCceeeEeeeeecCC-----------CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccccc--CC
Confidence 4467888888999999998432 2346899999999999999999999999999999999997664 47
Q ss_pred EEEEECCeecC---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHH-----HHHHHHHHHHHHcCCCccc
Q 000907 730 GNITISGYPKN---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSK-----TREMFVEEVMELVELNPLR 801 (1230)
Q Consensus 730 G~i~~~g~~~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~-----~~~~~~~~~l~~l~l~~~~ 801 (1230)
|.|.+||.+.+ .+.+-+.+||.||+-.+|+ -||.||+.- ...+.+.+ .+...+.|++ +.+.+-.
T Consensus 391 G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIaR-----f~~~~d~~kIieAA~lAgvHelI--l~lP~GY 462 (580)
T COG4618 391 GSVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIAR-----FGEEADPEKVIEAARLAGVHELI--LRLPQGY 462 (580)
T ss_pred CcEEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHHh-----ccccCCHHHHHHHHHHcChHHHH--HhCcCCc
Confidence 99999998764 3567789999999999987 599999942 22222221 1112233333 3456667
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHh
Q 000907 802 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 881 (1230)
Q Consensus 802 ~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd 881 (1230)
||.+|+.+ ..||||||||+++||||-.||.+++||||-|+||.+.+..+.+.|.+.+++|.|+|+++|.|+ +....|
T Consensus 463 dT~iG~~G-~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~D 539 (580)
T COG4618 463 DTRIGEGG-ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVD 539 (580)
T ss_pred cCccCCCC-CCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcc
Confidence 89998765 579999999999999999999999999999999999999999999999999999999999997 556777
Q ss_pred c
Q 000907 882 A 882 (1230)
Q Consensus 882 ~ 882 (1230)
+
T Consensus 540 k 540 (580)
T COG4618 540 K 540 (580)
T ss_pred e
Confidence 6
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-31 Score=290.48 Aligned_cols=203 Identities=19% Similarity=0.271 Sum_probs=161.4
Q ss_pred ceeEEeeeEEEEecCc----cccc--ccc-cCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEE
Q 000907 659 FSLTFDEITYSVDMPQ----EMKR--RGV-HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGN 731 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~----~~~~--~~~-~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~ 731 (1230)
+.+.++|++..++... .++. .+. ....+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p--~~G~ 80 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSP--TVGK 80 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceE
Confidence 4678888887776421 1111 111 12456799999999999999999999999999999999998765 3799
Q ss_pred EEECCeecChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 000907 732 ITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVN 811 (1230)
Q Consensus 732 i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 811 (1230)
|.++|. +++++|+..+.+.+|+.||+.+..... ....++..+.++++++.+++.+..+.. ++
T Consensus 81 I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~ 142 (264)
T PRK13546 81 VDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQP-----VK 142 (264)
T ss_pred EEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----cc
Confidence 999984 346677777778899999998754332 123334445567888888988766654 34
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+..|+
T Consensus 143 ~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~ 212 (264)
T PRK13546 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTK 212 (264)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCE
Confidence 79999999999999999999999999999999999999999999998777999999999976 45556676
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-32 Score=336.45 Aligned_cols=196 Identities=29% Similarity=0.424 Sum_probs=161.6
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++|+|+++.|+. ++.+|+|+|++++|||.+||+||||||||||+++|.|..++ .+|+|.+||.+
T Consensus 327 ~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~--~~G~I~idg~d 392 (567)
T COG1132 327 GSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP--TSGEILIDGID 392 (567)
T ss_pred CeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCEe
Confidence 46999999998852 45799999999999999999999999999999999998875 47999999988
Q ss_pred cC---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCC
Q 000907 739 KN---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE-------LNPLRQALVGLP 808 (1230)
Q Consensus 739 ~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~~ 808 (1230)
++ ...+++.++||+|++.+|. -||+||+.++.. +.++++ ++++++..+ +.+-.|+.+|..
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~-----~at~ee----i~~a~k~a~~~d~I~~lp~g~dt~vge~ 462 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP-----DATDEE----IEEALKLANAHEFIANLPDGYDTIVGER 462 (567)
T ss_pred hhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC-----CCCHHH----HHHHHHHhChHHHHHhCcccccceecCC
Confidence 64 3567889999999999988 899999998621 122222 333333332 233568888854
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
...||||||||++||||+++||+||+||||||+||+.++..+.+.++++. +|+|+++++|+++ .+- ..|+
T Consensus 463 -G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls-ti~-~aD~ 532 (567)
T COG1132 463 -GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS-TIK-NADR 532 (567)
T ss_pred -CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh-HHH-hCCE
Confidence 35699999999999999999999999999999999999999999999776 6789999999996 333 3776
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-31 Score=284.23 Aligned_cols=169 Identities=27% Similarity=0.325 Sum_probs=139.5
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|.....+.+|+|.+||.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~ 67 (200)
T cd03217 1 LEIKDLHVSVG-------------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDIT 67 (200)
T ss_pred CeEEEEEEEeC-------------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECC
Confidence 35677777652 34699999999999999999999999999999999998411124799999998764
Q ss_pred h---hc-ccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000907 741 Q---ET-FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 741 ~---~~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 816 (1230)
. .. .++.++|++|++.+++..|+++++. .. .+.||||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~~-----~~~LS~G 108 (200)
T cd03217 68 DLPPEERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------YV-----NEGFSGG 108 (200)
T ss_pred cCCHHHHhhCcEEEeecChhhccCccHHHHHh----------------------------------hc-----cccCCHH
Confidence 3 12 2345999999998888888877650 00 1359999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHH-HHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFE-AFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~-~fd~ 882 (1230)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. .+.+ ..|+
T Consensus 109 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~ 174 (200)
T cd03217 109 EKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDR 174 (200)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCE
Confidence 999999999999999999999999999999999999999998777899999999987 4444 5676
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-32 Score=343.06 Aligned_cols=195 Identities=27% Similarity=0.364 Sum_probs=161.2
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++++|++|+|+. .++.+|+|+|++|++||.+||+||||||||||+|+|+|..++ .+|+|.+||.+
T Consensus 476 ~~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 542 (710)
T TIGR03796 476 GYVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP--WSGEILFDGIP 542 (710)
T ss_pred CeEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEe
Confidence 36999999999852 234699999999999999999999999999999999998875 37999999998
Q ss_pred cC---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000907 739 KN---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLP 808 (1230)
Q Consensus 739 ~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 808 (1230)
+. ...+++.+|||+|++.+++ .|++||+.++. + +.+ ++.+.++++..++.+ -.|+.+|+.
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~----~-~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD----P-TIP----DADLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC----C-CCC----HHHHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 64 3467889999999998885 69999997631 1 222 233556666666543 346667654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+ .+||||||||++|||||+++|+||+||||||+||+.+++.+.+.|++ .++|+|+++|+++ ....+|+
T Consensus 613 G-~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~ 680 (710)
T TIGR03796 613 G-ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDE 680 (710)
T ss_pred C-CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCE
Confidence 4 57999999999999999999999999999999999999999999975 4899999999986 3455777
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=280.49 Aligned_cols=163 Identities=26% Similarity=0.445 Sum_probs=137.6
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+.. .++.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~ 67 (178)
T cd03247 1 LSINNVSFSYPE-----------QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP--QQGEITLDGVPVS 67 (178)
T ss_pred CEEEEEEEEeCC-----------CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCEEHH
Confidence 357788876631 113599999999999999999999999999999999998765 3799999998753
Q ss_pred h--hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 741 Q--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 741 ~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
. ..+++.++|++|++.+++ .|++||+ ...||||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~ 104 (178)
T cd03247 68 DLEKALSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGER 104 (178)
T ss_pred HHHHHHHhhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHH
Confidence 2 234677999999987775 6888886 135999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||++|||||+.+|++|+|||||+|||+.+++.+++.|+++. +++|||+++|++.. + +..|+
T Consensus 105 qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~ 165 (178)
T cd03247 105 QRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTG-I-EHMDK 165 (178)
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCE
Confidence 99999999999999999999999999999999999999885 58999999999873 3 34565
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-31 Score=296.04 Aligned_cols=193 Identities=26% Similarity=0.384 Sum_probs=147.6
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~v~~~g~~~~~ 67 (236)
T cd03253 2 EFENVTFAYD------------PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV--SSGSILIDGQDIRE 67 (236)
T ss_pred EEEEEEEEeC------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCEEEECCEEhhh
Confidence 5677777652 124599999999999999999999999999999999998764 47999999987532
Q ss_pred ---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCCCCC
Q 000907 742 ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQ-------ALVGLPGVN 811 (1230)
Q Consensus 742 ---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-------~~~~~~~~~ 811 (1230)
..+++.++|++|+..+++ .|++||+.+... ...... +.+.++..++.+..+ +... ...+
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~~ 136 (236)
T cd03253 68 VTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRP-----DATDEE----VIEAAKAAQIHDKIMRFPDGYDTIVG-ERGL 136 (236)
T ss_pred CCHHHHHhhEEEECCCChhhc-chHHHHHhhcCC-----CCCHHH----HHHHHHHcCcHHHHHhccccccchhh-cCCC
Confidence 234567999999988775 699999977421 111111 223333333322211 1111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++++ |+|||+++|++.. + ...|+
T Consensus 137 ~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~-~-~~~d~ 204 (236)
T cd03253 137 KLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLST-I-VNADK 204 (236)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCE
Confidence 7999999999999999999999999999999999999999999999876 9999999999873 3 33565
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=275.92 Aligned_cols=204 Identities=22% Similarity=0.339 Sum_probs=166.9
Q ss_pred CceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCe
Q 000907 658 PFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGY 737 (1230)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~ 737 (1230)
+.-+.++|++..+ +++.+|+|+|++|+|||-.+|+|||||||||||++++|..++. +|.+.+.|+
T Consensus 29 ~~li~l~~v~v~r-------------~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps--sg~~~~~G~ 93 (257)
T COG1119 29 EPLIELKNVSVRR-------------NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS--SGDVTLLGR 93 (257)
T ss_pred cceEEecceEEEE-------------CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC--CCceeeeee
Confidence 3458899998765 4678999999999999999999999999999999999987764 799999998
Q ss_pred ecCh----hcccceEEEEccC--CccCCCCCHHHHHHHHH--HhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000907 738 PKNQ----ETFTRISGYCEQN--DIHSPYVTVYESLLYSA--WLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPG 809 (1230)
Q Consensus 738 ~~~~----~~~~~~~~~v~q~--~~~~~~ltv~e~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 809 (1230)
+... .+.|+.+|+|.-. ..+.+..+|+|-+.-+. ..-.......++..+++..+++.+|+.+.+|+..+
T Consensus 94 ~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~--- 170 (257)
T COG1119 94 RFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG--- 170 (257)
T ss_pred eccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh---
Confidence 7532 4568899999743 34455678888775332 12222212334556778999999999999998765
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~--g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||-|||||+-|||||+++|++|+||||++|||...++.+.+.|.+++.. +.++|++||.+. |+-.+|++
T Consensus 171 --~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th 242 (257)
T COG1119 171 --SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTH 242 (257)
T ss_pred --hcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccce
Confidence 69999999999999999999999999999999999999999999998755 889999999986 66566665
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-31 Score=327.99 Aligned_cols=204 Identities=19% Similarity=0.238 Sum_probs=165.2
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
-++++|+++.+... .+.+.+|+||||++++||++||+||||||||||+++|+|..++. +|+|.++|...
T Consensus 12 ~l~v~~l~~~y~~~---------~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~--~G~i~~~g~~~ 80 (623)
T PRK10261 12 VLAVENLNIAFMQE---------QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA--GGLVQCDKMLL 80 (623)
T ss_pred eEEEeceEEEecCC---------CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC--CeEEEECCEEe
Confidence 48899999887421 12357999999999999999999999999999999999987653 69999988632
Q ss_pred -------------Chh---cc-cceEEEEccCC--ccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-
Q 000907 740 -------------NQE---TF-TRISGYCEQND--IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP- 799 (1230)
Q Consensus 740 -------------~~~---~~-~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~- 799 (1230)
... .. ++.+|||+|++ .+++.+||.||+.+...... .....+..++++++++.+||.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~ 158 (623)
T PRK10261 81 RRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEA 158 (623)
T ss_pred ccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCCh
Confidence 111 12 24689999997 67888999999998754321 2234445567889999999964
Q ss_pred --cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHH
Q 000907 800 --LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDI 876 (1230)
Q Consensus 800 --~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i 876 (1230)
..+.. +.+|||||||||+||+||+.+|++|||||||+|||+.++..+.++|++++++ |+|||++||++. .+
T Consensus 159 ~~~~~~~-----~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~ 232 (623)
T PRK10261 159 QTILSRY-----PHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VV 232 (623)
T ss_pred hhHHhCC-----CccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HH
Confidence 23443 4579999999999999999999999999999999999999999999999755 999999999986 45
Q ss_pred HHHHhc
Q 000907 877 FEAFDA 882 (1230)
Q Consensus 877 ~~~fd~ 882 (1230)
.+..|+
T Consensus 233 ~~~adr 238 (623)
T PRK10261 233 AEIADR 238 (623)
T ss_pred HHhCCE
Confidence 566787
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-31 Score=272.94 Aligned_cols=156 Identities=28% Similarity=0.411 Sum_probs=132.5
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 1 i~~~~~~~~~~------------~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~~~--- 63 (166)
T cd03223 1 IELENLSLATP------------DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW--GSGRIGMPEG--- 63 (166)
T ss_pred CEEEEEEEEcC------------CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCC---
Confidence 35678877652 124699999999999999999999999999999999998764 3799999873
Q ss_pred hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000907 741 QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 820 (1230)
Q Consensus 741 ~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr 820 (1230)
+.++|++|++.++ ..|++||+.+. ..+.||||||||
T Consensus 64 -----~~i~~~~q~~~~~-~~tv~~nl~~~--------------------------------------~~~~LS~G~~~r 99 (166)
T cd03223 64 -----EDLLFLPQRPYLP-LGTLREQLIYP--------------------------------------WDDVLSGGEQQR 99 (166)
T ss_pred -----ceEEEECCCCccc-cccHHHHhhcc--------------------------------------CCCCCCHHHHHH
Confidence 5789999998764 57999998642 024699999999
Q ss_pred HHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 821 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 821 l~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++|||||+.+|++++|||||+|||+.+++.+.+.++++ ++|+|++||++. .....|+
T Consensus 100 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~ 156 (166)
T cd03223 100 LAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDR 156 (166)
T ss_pred HHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCE
Confidence 99999999999999999999999999999999999875 689999999985 2355665
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=341.45 Aligned_cols=196 Identities=23% Similarity=0.364 Sum_probs=161.3
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++++|++++|+ +++.+|+|+|++|++||.+||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 472 ~~I~~~~vsf~y~------------~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p--~~G~I~idg~~ 537 (708)
T TIGR01193 472 GDIVINDVSYSYG------------YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA--RSGEILLNGFS 537 (708)
T ss_pred CcEEEEEEEEEcC------------CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CCcEEEECCEE
Confidence 3699999999884 124699999999999999999999999999999999998875 47999999998
Q ss_pred cC---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000907 739 KN---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLP 808 (1230)
Q Consensus 739 ~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 808 (1230)
+. ...+++.+|||+|++.+++. |++||+.++.. .+.+ ++.+.++++..++.+ -.|+.+|+.
T Consensus 538 i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~----~~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~ 608 (708)
T TIGR01193 538 LKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK----ENVS----QDEIWAACEIAEIKDDIENMPLGYQTELSEE 608 (708)
T ss_pred HHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCC----CCCC----HHHHHHHHHHhCCHHHHHhcccccCcEecCC
Confidence 54 35678899999999998864 99999987521 1122 233455666655533 346777764
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+ .+||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++ +|+|+|+++|+++ ....+|+
T Consensus 609 G-~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~ 677 (708)
T TIGR01193 609 G-SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDK 677 (708)
T ss_pred C-CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCE
Confidence 3 579999999999999999999999999999999999999999999875 5899999999996 3466777
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-32 Score=268.46 Aligned_cols=188 Identities=24% Similarity=0.387 Sum_probs=161.8
Q ss_pred cccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh---hcccceEEEEccC
Q 000907 678 RRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETFTRISGYCEQN 754 (1230)
Q Consensus 678 ~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~ 754 (1230)
+..+.++++.+|+++|+++++|.+++++|||||||||||.+++.+.+. .+|+|.++|.++.. ..+.+.++..-|+
T Consensus 6 nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~--d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~ 83 (252)
T COG4604 6 NVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKK--DSGEITIDGLELTSTPSKELAKKLSILKQE 83 (252)
T ss_pred hhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccc--cCceEEEeeeecccCChHHHHHHHHHHHhh
Confidence 334455778999999999999999999999999999999999987764 47999999998643 4566778888999
Q ss_pred CccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEe
Q 000907 755 DIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSII 834 (1230)
Q Consensus 755 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~il 834 (1230)
......+||+|-+.|+..... ......+....+++.++.++|+++.|+.. .+||||||||.-||+.++.+.+.+
T Consensus 84 N~i~~rlTV~dLv~FGRfPYS-qGRlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTdyv 157 (252)
T COG4604 84 NHINSRLTVRDLVGFGRFPYS-QGRLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYV 157 (252)
T ss_pred chhhheeEHHHHhhcCCCccc-CCCCchHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCcEE
Confidence 988899999999998733221 12233455677999999999999999875 479999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCC
Q 000907 835 FMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPS 873 (1230)
Q Consensus 835 llDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~ 873 (1230)
+||||.++||...+..+++.||+++++ |+||+++.||-+
T Consensus 158 lLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDIN 197 (252)
T COG4604 158 LLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN 197 (252)
T ss_pred EecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEeccc
Confidence 999999999999999999999999876 999999999976
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-31 Score=322.95 Aligned_cols=206 Identities=20% Similarity=0.251 Sum_probs=164.9
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 736 (1230)
-++++|+++.+... .+.+.+|+|+||++++||++||+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 75 (529)
T PRK15134 5 LLAIENLSVAFRQQ---------QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHG 75 (529)
T ss_pred eEEEeceEEEecCC---------CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECC
Confidence 37889998887310 01257999999999999999999999999999999999987641 2479999999
Q ss_pred eecChh------cc-cceEEEEccCCc--cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc---cccc
Q 000907 737 YPKNQE------TF-TRISGYCEQNDI--HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL---RQAL 804 (1230)
Q Consensus 737 ~~~~~~------~~-~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---~~~~ 804 (1230)
.++... .. ++.+||++|++. +.+.+|+.|++.+...... .....+..++++++++.+++.+. .++.
T Consensus 76 ~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 153 (529)
T PRK15134 76 ESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTDY 153 (529)
T ss_pred EecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhhC
Confidence 875321 12 257999999974 6677899999876532211 22344455678999999999753 3444
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 805 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 805 ~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+++|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+..|+
T Consensus 154 -----~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dr 226 (529)
T PRK15134 154 -----PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADR 226 (529)
T ss_pred -----CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCE
Confidence 4579999999999999999999999999999999999999999999998765 899999999987 44566777
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=339.76 Aligned_cols=195 Identities=26% Similarity=0.398 Sum_probs=159.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|++++|+.. +++.+|+|+|++++|||.+||+||||||||||+|+|+|..++ .+|+|.+||.++
T Consensus 478 ~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~i 545 (711)
T TIGR00958 478 LIEFQDVSFSYPNR----------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP--TGGQVLLDGVPL 545 (711)
T ss_pred eEEEEEEEEECCCC----------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCEEH
Confidence 69999999998521 134699999999999999999999999999999999998875 379999999986
Q ss_pred Ch---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCC
Q 000907 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLPG 809 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~ 809 (1230)
+. ..+++.++||+|++.+++ .|++||+.++. + +.+ ++.+.++++..++.+ -.|+.+|+.+
T Consensus 546 ~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~----~-~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G 615 (711)
T TIGR00958 546 VQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGL----T-DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKG 615 (711)
T ss_pred HhcCHHHHHhhceEEecCccccc-cCHHHHHhcCC----C-CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCCC
Confidence 43 457788999999998876 69999998752 1 122 234566777766643 3466676543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.+||||||||++|||||+++|+|++||||||+||+.+++.+.+ .. ..+++|+|+++|+++ ..+.+|+
T Consensus 616 -~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~ 682 (711)
T TIGR00958 616 -SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQ 682 (711)
T ss_pred -CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCE
Confidence 5799999999999999999999999999999999999999988 22 236899999999985 3466776
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-31 Score=298.05 Aligned_cols=202 Identities=24% Similarity=0.340 Sum_probs=175.9
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.+++++++..+ +...+++|||+++++||+.||+|.||||||||+++|.|.+.|. +|+|.+||++.
T Consensus 4 ~l~~~~itK~f-------------~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~--~GeI~v~G~~v 68 (501)
T COG3845 4 ALEMRGITKRF-------------PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD--SGEIRVDGKEV 68 (501)
T ss_pred eEEEeccEEEc-------------CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC--cceEEECCEEe
Confidence 46777777655 4578999999999999999999999999999999999998764 89999999985
Q ss_pred Ch----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCH
Q 000907 740 NQ----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815 (1230)
Q Consensus 740 ~~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 815 (1230)
.- ...+..||+|.|+..+.|++||.||+..+..-............++++++.+.+||.-..|.+++ .||-
T Consensus 69 ~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~-----dLsV 143 (501)
T COG3845 69 RIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA-----DLSV 143 (501)
T ss_pred ccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee-----cCCc
Confidence 32 23456799999999999999999999887533222234555667789999999999877777765 5999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||.|-++|.++|++|+|||||+-|-|....++++.|++++++|+|||++||... |+.+..|+
T Consensus 144 G~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDr 209 (501)
T COG3845 144 GEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADR 209 (501)
T ss_pred chhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCe
Confidence 9999999999999999999999999999999999999999999999999999999987 78888898
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=339.37 Aligned_cols=197 Identities=26% Similarity=0.408 Sum_probs=163.1
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++++|++++|+. +++.+|+|+|++++|||.+||+|+||||||||+|+|+|..++ .+|+|.+||.+
T Consensus 462 ~~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 528 (694)
T TIGR03375 462 GEIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP--TEGSVLLDGVD 528 (694)
T ss_pred ceEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEE
Confidence 36999999999842 234699999999999999999999999999999999998875 37999999998
Q ss_pred cCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000907 739 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLP 808 (1230)
Q Consensus 739 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 808 (1230)
++. ..+++.++||+|++.+++ .|++||+.++. ++.+ ++.+.++++..++.+ -.|+.+|+.
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~-----~~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~ 598 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA-----PYAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGER 598 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC-----CCCC----HHHHHHHHHHcChHHHHHhCcccccceecCC
Confidence 643 567889999999999887 59999998641 1122 233555666655533 346777765
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+ ..||||||||++|||||+++|++++||||||+||+.+++.+.+.|+++. +++|+|+++|+++ ....+|+
T Consensus 599 G-~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~ 668 (694)
T TIGR03375 599 G-RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDR 668 (694)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCE
Confidence 4 5699999999999999999999999999999999999999999998875 5899999999996 3466777
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-31 Score=328.43 Aligned_cols=198 Identities=27% Similarity=0.396 Sum_probs=158.7
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++++|++++++. +++.+|+|+|++++|||.++|+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 315 ~~i~~~~v~~~y~~-----------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~ 381 (544)
T TIGR01842 315 GHLSVENVTIVPPG-----------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPP--TSGSVRLDGAD 381 (544)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEe
Confidence 36999999998842 234689999999999999999999999999999999998775 37999999988
Q ss_pred cCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCC
Q 000907 739 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-------PLRQALVGLP 808 (1230)
Q Consensus 739 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~ 808 (1230)
... ..+++.++||+|++.+++. |++||+.+.. ...+.+ .+.+.++..++. +-.|+.+|..
T Consensus 382 i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~-----~~~~~~----~~~~~~~~~~~~~~i~~l~~gl~t~~~~~ 451 (544)
T TIGR01842 382 LKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFG-----ENADPE----KIIEAAKLAGVHELILRLPDGYDTVIGPG 451 (544)
T ss_pred hhhCCHHHHhhheEEecCCcccccc-cHHHHHhccC-----CCCCHH----HHHHHHHHhChHHHHHhCccccccccCCC
Confidence 643 4567889999999998875 9999997531 112222 233333333322 2235556553
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
...||||||||++|||||+++|++|+|||||+|||+.++..+.+.|+++..+|+|+|+++|+++ ..+.+|+
T Consensus 452 -g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~ 522 (544)
T TIGR01842 452 -GATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDK 522 (544)
T ss_pred -cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCE
Confidence 4579999999999999999999999999999999999999999999988666899999999986 3466776
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=290.19 Aligned_cols=195 Identities=24% Similarity=0.318 Sum_probs=153.1
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+.. +++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 68 (221)
T cd03244 2 DIEFKNVSLRYRP-----------NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVEL--SSGSILIDGVDI 68 (221)
T ss_pred cEEEEEEEEecCC-----------CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCCEEEECCEEh
Confidence 3678899887631 124699999999999999999999999999999999998764 479999999875
Q ss_pred Ch---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccc-------cccCCC
Q 000907 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQA-------LVGLPG 809 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-------~~~~~~ 809 (1230)
.. ..+++.++|++|++.+++ .|++||+.+.. ... .+.+.+.++.+++.+..++ ..+ ..
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~------~~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~-~~ 136 (221)
T cd03244 69 SKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFG------EYS----DEELWQALERVGLKEFVESLPGGLDTVVE-EG 136 (221)
T ss_pred HhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCC------CCC----HHHHHHHHHHhCcHHHHHhcccccccccc-cC
Confidence 32 345678999999988775 59999986421 111 1234556666666543321 111 13
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
...||+|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. ++.|||+++|++.. + ...|+
T Consensus 137 ~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~ 206 (221)
T cd03244 137 GENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAF-KDCTVLTIAHRLDT-I-IDSDR 206 (221)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-hhCCE
Confidence 46799999999999999999999999999999999999999999999885 46899999999863 3 23565
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-30 Score=322.53 Aligned_cols=106 Identities=21% Similarity=0.325 Sum_probs=89.0
Q ss_pred HHHHHHHHcCCccc-ccccccCCccccCcccccchhHHHHHHhcCC--ceeeeeCCCcccchHHHHHHHHHHHHHhhhcC
Q 000907 104 ITDYILKVLDLDVC-ADTVVGDEMLRGISGGQRKRVTTGEMLVGPA--HALFMDEISTGLDSSTTFHIVNSLGQFNHILN 180 (1230)
Q Consensus 104 ~vd~il~~lgL~~~-~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p--~ILlLDEPTSGLDs~sa~~I~~~L~~la~~~~ 180 (1230)
+++ .|+.+||.+- .|..++ .|||||||||.||++|..+| ++++|||||+|||+.....+++.|+++.+ .|
T Consensus 469 rl~-~L~~vGL~~l~l~r~~~-----~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~-~G 541 (943)
T PRK00349 469 RLK-FLVDVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD-LG 541 (943)
T ss_pred HHH-HhhccccCCCCCCCchh-----hCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHh-CC
Confidence 454 6888999865 676664 59999999999999999987 99999999999999999999999999975 46
Q ss_pred CEEEEEecCCChhHHhhccceEEe------cCCeEEEEcChhhH
Q 000907 181 GTALISLLQPAPEVYNLFDDIILV------SDGQIVYQGPLEHV 218 (1230)
Q Consensus 181 ~t~iiti~qp~~~i~~lfD~I~vL------~~G~vv~~G~~~~l 218 (1230)
.|+|+ +.|...++. .+|+|++| .+|++++.|+.+++
T Consensus 542 ~TVIv-VeH~~~~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~ 583 (943)
T PRK00349 542 NTLIV-VEHDEDTIR-AADYIVDIGPGAGVHGGEVVASGTPEEI 583 (943)
T ss_pred CEEEE-EeCCHHHHH-hCCEEEEeccccCCCCCEEeeccCHHHH
Confidence 66555 555566665 69999999 89999999987754
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-31 Score=286.56 Aligned_cols=181 Identities=25% Similarity=0.337 Sum_probs=141.4
Q ss_pred eeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh-------hcccceEEEEccCCccC
Q 000907 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-------ETFTRISGYCEQNDIHS 758 (1230)
Q Consensus 686 ~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~ 758 (1230)
+.+++|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.++|++|++.++
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT--LEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL 91 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCcccccccccccchhhcceEEEEcCCCccc
Confidence 4699999999999999999999999999999999998764 37999999986532 12346799999998877
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000907 759 PYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQ-------ALVGLPGVNGLSTEQRKRLTIAVELVANP 831 (1230)
Q Consensus 759 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-------~~~~~~~~~~lSgGqrqrl~ia~al~~~p 831 (1230)
..|++||+.+... ... +..+++++.+++.+..+ +..+. .+..||||||||++||++|+.+|
T Consensus 92 -~~t~~~nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 92 -NATVEENITFGSP------FNK----QRYKAVTDACSLQPDIDLLPFGDQTEIGE-RGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred -cccHHHHHhhcCc------CCH----HHHHHHHHHhCcHHHHHhCcCccccCccc-CCCcCCHHHHHHHHHHHHHhhCC
Confidence 5799999976421 111 12345566666543322 11111 24579999999999999999999
Q ss_pred CEeEEeCCCCCCCHHHHHHHHH--HHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 832 SIIFMDEPTSGLDARAAAVVMR--TVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 832 ~illlDEPtsgLD~~~~~~i~~--~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++|+|||||+|||+.++..+++ .++.+.++|+|+|+++|++.. + ...|+
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~-~-~~~d~ 210 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY-L-PHADW 210 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH-H-hhCCE
Confidence 9999999999999999999998 666666668999999999863 3 34554
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=331.37 Aligned_cols=195 Identities=26% Similarity=0.339 Sum_probs=160.6
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++. ++.+|+|+|++++|||.++|+|+||||||||+|+|+|..++ .+|+|.+||.+.
T Consensus 334 ~I~~~~vsf~y~~------------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p--~~G~I~i~g~~i 399 (588)
T PRK13657 334 AVEFDDVSFSYDN------------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP--QSGRILIDGTDI 399 (588)
T ss_pred eEEEEEEEEEeCC------------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEEh
Confidence 6999999998841 23599999999999999999999999999999999998875 479999999886
Q ss_pred Ch---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCC
Q 000907 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLPG 809 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~ 809 (1230)
.. ..+++.++||+|++.+++ .|++||+.++. + +.+ ++.++++++..++.+ -.|+.+|..
T Consensus 400 ~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~-~~~----d~~i~~al~~~~l~~~i~~lp~gldt~i~~~- 468 (588)
T PRK13657 400 RTVTRASLRRNIAVVFQDAGLFN-RSIEDNIRVGR----P-DAT----DEEMRAAAERAQAHDFIERKPDGYDTVVGER- 468 (588)
T ss_pred hhCCHHHHHhheEEEecCccccc-ccHHHHHhcCC----C-CCC----HHHHHHHHHHhCHHHHHHhCcccccchhcCC-
Confidence 43 467789999999998886 59999998741 1 222 223455566655433 346666653
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.+.||||||||++|||||+++|++++||||||+||+.+++.+.+.|+++. +++|+|++||+++ .....|+
T Consensus 469 g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ 538 (588)
T PRK13657 469 GRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADR 538 (588)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCE
Confidence 35699999999999999999999999999999999999999999998874 5899999999985 4567887
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-31 Score=279.46 Aligned_cols=152 Identities=30% Similarity=0.457 Sum_probs=127.8
Q ss_pred eeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh---hcccceEEEEccCCccCCCCC
Q 000907 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETFTRISGYCEQNDIHSPYVT 762 (1230)
Q Consensus 686 ~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lt 762 (1230)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~--~~G~v~~~g~~~~~~~~~~~~~~i~~~~q--------- 80 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP--SSGEILLDGKDLASLSPKELARKIAYVPQ--------- 80 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCcCCHHHHHHHHhHHHH---------
Confidence 4699999999999999999999999999999999998765 47999999987532 223345677766
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCC
Q 000907 763 VYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 842 (1230)
Q Consensus 763 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsg 842 (1230)
+++.+++.+..++. ++.||||||||++|||+|+.+|++++|||||+|
T Consensus 81 ----------------------------~l~~~gl~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEP~~~ 127 (180)
T cd03214 81 ----------------------------ALELLGLAHLADRP-----FNELSGGERQRVLLARALAQEPPILLLDEPTSH 127 (180)
T ss_pred ----------------------------HHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 45566666544443 346999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 843 LDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 843 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||+.++..+.+.|++++++ |+|+|+++|++. ++.+..|+
T Consensus 128 LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~ 167 (180)
T cd03214 128 LDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADR 167 (180)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999998766 899999999987 44566676
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-31 Score=283.90 Aligned_cols=179 Identities=22% Similarity=0.389 Sum_probs=138.2
Q ss_pred eEEeeeEEEEecCcccccccccCC--ceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDD--KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
++++|+++.+.. .+ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|
T Consensus 1 l~~~~l~~~~~~----------~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~--~~G~i~~~g-- 66 (204)
T cd03250 1 ISVEDASFTWDS----------GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK--LSGSVSVPG-- 66 (204)
T ss_pred CEEeEEEEecCC----------CCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCCeEEEcC--
Confidence 357788776531 00 13699999999999999999999999999999999998765 479999998
Q ss_pred cChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCCCCC
Q 000907 739 KNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR-------QALVGLPGVN 811 (1230)
Q Consensus 739 ~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~~~~~~~~ 811 (1230)
.++|++|++.++ ..|++||+.+... .... ...+.++.+++.+.. ++.... ...
T Consensus 67 --------~i~~~~q~~~l~-~~t~~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~ 126 (204)
T cd03250 67 --------SIAYVSQEPWIQ-NGTIRENILFGKP------FDEE----RYEKVIKACALEPDLEILPDGDLTEIGE-KGI 126 (204)
T ss_pred --------EEEEEecCchhc-cCcHHHHhccCCC------cCHH----HHHHHHHHcCcHHHHHhccCcccceecC-CCC
Confidence 589999999887 4699999987421 1111 123333343332211 111222 245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCC
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMR-TVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~-~l~~~~~~g~tvi~~~H~~~ 873 (1230)
.||+|||||++|||+|+.+|++++|||||+|||+.+++.+.+ ++++..++|+|||+++|++.
T Consensus 127 ~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~ 189 (204)
T cd03250 127 NLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ 189 (204)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH
Confidence 799999999999999999999999999999999999999988 56666666899999999986
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-32 Score=295.61 Aligned_cols=197 Identities=24% Similarity=0.363 Sum_probs=162.8
Q ss_pred CCCceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEEC
Q 000907 656 FEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITIS 735 (1230)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~ 735 (1230)
.....++|+|+++.|+ .++++|+||||++.||+.+|++||||+||||++++|....+. .+|.|.+|
T Consensus 533 ~~~G~i~fsnvtF~Y~------------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv--~sGsI~iD 598 (790)
T KOG0056|consen 533 VTQGKIEFSNVTFAYD------------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDV--NSGSITID 598 (790)
T ss_pred ccCCeEEEEEeEEecC------------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhc--cCceEEEc
Confidence 4556899999999985 357899999999999999999999999999999999986653 47999999
Q ss_pred CeecCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHH--HHHHH-HHHcCCCccccccccCCC
Q 000907 736 GYPKNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREM--FVEEV-MELVELNPLRQALVGLPG 809 (1230)
Q Consensus 736 g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~--~~~~~-l~~l~l~~~~~~~~~~~~ 809 (1230)
|+++.. ...|+.+|.||||..++. -|+..|++|+. + ..+.++..+ ++..+ -+.++..+-.++.+|+.+
T Consensus 599 gqdIrnvt~~SLRs~IGVVPQDtvLFN-dTI~yNIryak----~-~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERG 672 (790)
T KOG0056|consen 599 GQDIRNVTQSSLRSSIGVVPQDTVLFN-DTILYNIRYAK----P-SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERG 672 (790)
T ss_pred CchHHHHHHHHHHHhcCcccCcceeec-ceeeeheeecC----C-CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcc
Confidence 998753 567889999999998876 48889998852 1 122222211 11122 234677777889999876
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCH
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSI 874 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~ 874 (1230)
.+ |||||||||+|||+++++|.+++|||.||+||..+.+.|+..|.+++ .++|.|++.|..|.
T Consensus 673 Lk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlc-a~RTtIVvAHRLST 735 (790)
T KOG0056|consen 673 LK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLC-ANRTTIVVAHRLST 735 (790)
T ss_pred cc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHh-cCCceEEEeeeehh
Confidence 64 99999999999999999999999999999999999999999999987 58999999999884
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-30 Score=331.40 Aligned_cols=118 Identities=20% Similarity=0.260 Sum_probs=92.3
Q ss_pred cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHh---hCCC
Q 000907 757 HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL-RQALVGLPGVNGLSTEQRKRLTIAVELV---ANPS 832 (1230)
Q Consensus 757 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~lSgGqrqrl~ia~al~---~~p~ 832 (1230)
.+...||.|+|.+...-........++..+++ +.++.+||.+. .+.. ...||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45567999999886542211111223334455 47888999765 4544 3479999999999999998 6999
Q ss_pred EeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 833 IIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 833 illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+++|||||+|||+.+...+++.|++++++|.|||+++|++. .+ ...|+
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDr 880 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADY 880 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCE
Confidence 99999999999999999999999999888999999999986 34 77777
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-31 Score=330.11 Aligned_cols=197 Identities=25% Similarity=0.359 Sum_probs=162.7
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|++++++. .++.+|+|+|+++++||.++|+|+||||||||+++|+|..++. +|+|.+||.+.
T Consensus 330 ~i~~~~v~f~y~~-----------~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~--~G~I~i~g~~i 396 (571)
T TIGR02203 330 DVEFRNVTFRYPG-----------RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD--SGQILLDGHDL 396 (571)
T ss_pred eEEEEEEEEEcCC-----------CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC--CCeEEECCEeH
Confidence 6999999998842 1246999999999999999999999999999999999988753 79999999875
Q ss_pred C---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCC
Q 000907 740 N---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLPG 809 (1230)
Q Consensus 740 ~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~ 809 (1230)
+ ...+++.++|++|++.+++ .|++||+.++. +++.+ ++.++++++.+++.+ -.|+.+|+.+
T Consensus 397 ~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g 467 (571)
T TIGR02203 397 ADYTLASLRRQVALVSQDVVLFN-DTIANNIAYGR----TEQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGENG 467 (571)
T ss_pred HhcCHHHHHhhceEEccCccccc-ccHHHHHhcCC----CCCCC----HHHHHHHHHHcChHHHHHhCcCcccceecCCC
Confidence 4 3456788999999998875 59999998641 11222 234666777776643 2466676543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+.||||||||++||||++++|+|++||||||+||+.+++.+.+.|++.. +++|+|++||+++ ..+.+|+
T Consensus 468 -~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ 536 (571)
T TIGR02203 468 -VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADR 536 (571)
T ss_pred -CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCE
Confidence 5799999999999999999999999999999999999999999999874 5799999999985 4577787
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-31 Score=274.41 Aligned_cols=159 Identities=31% Similarity=0.495 Sum_probs=134.3
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+.. .+..+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~--~~G~i~~~g~~~~~ 68 (171)
T cd03228 2 EFKNVSFSYPG-----------RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP--TSGEILIDGVDLRD 68 (171)
T ss_pred EEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCCEEEECCEEhhh
Confidence 56777776531 113699999999999999999999999999999999998765 37999999987532
Q ss_pred ---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHH
Q 000907 742 ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 742 ---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 818 (1230)
..+++.++|++|++.+++ .|+.||+ ||||||
T Consensus 69 ~~~~~~~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~~ 102 (171)
T cd03228 69 LDLESLRKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQR 102 (171)
T ss_pred cCHHHHHhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHHH
Confidence 234567999999987765 5888776 899999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||++||++|+.+|++++|||||+|||+.++..+.+.|+++. +++|+|+++|++.. +.. .|+
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~~~-~d~ 163 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRALA-KGKTVIVIAHRLST-IRD-ADR 163 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-HHh-CCE
Confidence 99999999999999999999999999999999999999885 47999999999863 333 554
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=269.33 Aligned_cols=147 Identities=29% Similarity=0.433 Sum_probs=126.8
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.++ ++++++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~v~~~g~~~~ 65 (163)
T cd03216 1 LELRGITKRFG-------------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKP--DSGEILVDGKEVS 65 (163)
T ss_pred CEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEECC
Confidence 35778887763 24699999999999999999999999999999999998765 4799999998754
Q ss_pred h----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000907 741 Q----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 741 ~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 816 (1230)
. ...++.++|++| ||||
T Consensus 66 ~~~~~~~~~~~i~~~~q-----------------------------------------------------------LS~G 86 (163)
T cd03216 66 FASPRDARRAGIAMVYQ-----------------------------------------------------------LSVG 86 (163)
T ss_pred cCCHHHHHhcCeEEEEe-----------------------------------------------------------cCHH
Confidence 2 123456788877 8999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||++|||||+.+|++++|||||+|||+.+++.+.+.|++++++|.|+|+++|++. ++-+..|+
T Consensus 87 ~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~ 151 (163)
T cd03216 87 ERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADR 151 (163)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999999999999999999999999999999777999999999976 34455665
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-32 Score=317.01 Aligned_cols=169 Identities=20% Similarity=0.415 Sum_probs=142.1
Q ss_pred ceeEEEEECCccCCCCcc---cceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhccCCCchhhH
Q 000907 13 KASGKVTYNGHDMHEFVP---QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDV 89 (1230)
Q Consensus 13 ~~~G~V~vnG~~~~~~~~---~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 89 (1230)
-.+|+|++||+|+++.+. |+.+|+|.|||+||.. ||+|||.|+.. +. +
T Consensus 520 PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~-~~------------------------t--- 570 (716)
T KOG0058|consen 520 PTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD-NA------------------------T--- 570 (716)
T ss_pred CCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC-CC------------------------C---
Confidence 458999999999988763 6899999999998875 99999999864 11 1
Q ss_pred HHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcccchHHHHHHH
Q 000907 90 FMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIV 169 (1230)
Q Consensus 90 ~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGLDs~sa~~I~ 169 (1230)
.++....++.++ .+|+|.+ +++++||.||++|. .||||||||++|||||++||+||+|||+||+||+.+++.|.
T Consensus 571 -~e~i~~AAk~AN-ah~FI~~---~p~gY~T~VGEkG~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq 644 (716)
T KOG0058|consen 571 -DEEIEAAAKMAN-AHEFITN---FPDGYNTVVGEKGS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQ 644 (716)
T ss_pred -HHHHHHHHHHhC-hHHHHHh---CccccccccCCccc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHH
Confidence 111222333444 4788877 99999999998886 59999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 170 NSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 170 ~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
++|.++.+ + +||++|+|+.++|.+. |+|+|+++|+|++.|+|+|+.+
T Consensus 645 ~aL~~~~~--~-rTVlvIAHRLSTV~~A-d~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 645 EALDRLMQ--G-RTVLVIAHRLSTVRHA-DQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred HHHHHhhc--C-CeEEEEehhhhHhhhc-cEEEEEcCCeEEecccHHHHhh
Confidence 99987653 3 5566799998888775 9999999999999999999965
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-31 Score=286.07 Aligned_cols=179 Identities=23% Similarity=0.333 Sum_probs=145.4
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChhcccceEEEEccCCccC--CCCCHHHHHHHHH
Q 000907 694 GAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHS--PYVTVYESLLYSA 771 (1230)
Q Consensus 694 ~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~--~~ltv~e~l~~~~ 771 (1230)
+++++||+++|+|+||||||||+++|+|..++ .+|+|.+||.+.. ..++.++|++|++.++ ..+|+.||+.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPP--AKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 46899999999999999999999999998765 3799999998753 2356799999998664 3479999998753
Q ss_pred HhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHH
Q 000907 772 WLRLS-SEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAV 850 (1230)
Q Consensus 772 ~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~ 850 (1230)
..... .........+.++++++.+++.+..++.+ .+||||||||++|||+|+.+|++++|||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 21100 00111223456788999999987766654 4699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 851 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 851 i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+.+.|++++++|+|+|++||++. ++.+..|+
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~ 182 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDR 182 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCE
Confidence 99999998877999999999987 46666776
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-31 Score=258.66 Aligned_cols=184 Identities=24% Similarity=0.336 Sum_probs=159.2
Q ss_pred ccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh--hcccceEEEEccC
Q 000907 677 KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ--ETFTRISGYCEQN 754 (1230)
Q Consensus 677 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~ 754 (1230)
+++....++..++.++||++.+||.+-|.|||||||||||++|+|...+. +|+|.++|.++.. +.+.+.+-|+-..
T Consensus 6 ~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~--~G~v~~~~~~i~~~~~~~~~~l~yLGH~ 83 (209)
T COG4133 6 ENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD--AGEVYWQGEPIQNVRESYHQALLYLGHQ 83 (209)
T ss_pred hhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC--CCeEEecCCCCccchhhHHHHHHHhhcc
Confidence 33444556778999999999999999999999999999999999987753 7999999987653 2345677888888
Q ss_pred CccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEe
Q 000907 755 DIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSII 834 (1230)
Q Consensus 755 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~il 834 (1230)
+.+-+.+||.|||.|....... ...+.+.+.++.+||....|..++ .||-||||||+|||-.+..+++.
T Consensus 84 ~giK~eLTa~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqRRvAlArL~ls~~pLW 152 (209)
T COG4133 84 PGIKTELTALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPVG-----QLSAGQQRRVALARLWLSPAPLW 152 (209)
T ss_pred ccccchhhHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccchh-----hcchhHHHHHHHHHHHcCCCCce
Confidence 8899999999999997655432 112447889999999999998765 69999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 835 FMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 835 llDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
+||||+++||......+-..+...+.+|-.||.+||||.
T Consensus 153 iLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l 191 (209)
T COG4133 153 ILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPL 191 (209)
T ss_pred eecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Confidence 999999999999999999999888888999999999986
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=262.94 Aligned_cols=198 Identities=26% Similarity=0.305 Sum_probs=167.3
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++++. +++.||++||++|++||+.+||||||||||||.++|+|.+....++|+|.++|.++
T Consensus 3 ~L~I~dLhv~v~------------~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI 70 (251)
T COG0396 3 MLEIKDLHVEVE------------GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDI 70 (251)
T ss_pred eeEEeeeEEEec------------CchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCccc
Confidence 478889988774 22579999999999999999999999999999999999877656789999999986
Q ss_pred Ch----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCC
Q 000907 740 NQ----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQALVGLPGVNGLS 814 (1230)
Q Consensus 740 ~~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lS 814 (1230)
.. ++.+.-+...+|.|.-+|..|+.+.|..+.+.+........+..+.+++.++.+++.+ ..++.+. .|+|
T Consensus 71 ~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFS 146 (251)
T COG0396 71 LELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EGFS 146 (251)
T ss_pred ccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCcC
Confidence 43 3455677889999999999999999998766543221112344566888999999987 5555553 3799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
||||||..|+..++.+|++.+||||-||||..+-+.|-+.++++++.|++++++||..+
T Consensus 147 GGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~r 205 (251)
T COG0396 147 GGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQR 205 (251)
T ss_pred cchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHH
Confidence 99999999999999999999999999999999999999999999989999999999764
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-31 Score=332.43 Aligned_cols=197 Identities=28% Similarity=0.385 Sum_probs=161.2
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++++|++++|+. +++.+|+|+|++++|||.+||+|+||||||||+|+|+|..++. +|+|.+||.+
T Consensus 454 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~--~G~I~idg~~ 520 (694)
T TIGR01846 454 GAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ--HGQVLVDGVD 520 (694)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEe
Confidence 46999999998842 2346999999999999999999999999999999999987753 7999999998
Q ss_pred cCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCC
Q 000907 739 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLP 808 (1230)
Q Consensus 739 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 808 (1230)
++. ..+++.++||+|++.+++ .|++||+.++. + +.+ ++.+.++++..++.+ -.|+.+|..
T Consensus 521 i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~----~-~~~----~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~ 590 (694)
T TIGR01846 521 LAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN----P-GAP----FEHVIHAAKLAGAHDFISELPQGYNTEVGEK 590 (694)
T ss_pred hhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC----C-CCC----HHHHHHHHHHcChHHHHHhCcCccCcEecCC
Confidence 643 467788999999998876 69999997631 1 222 223445555555433 346667654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
..+||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|++||+++. ...+|+
T Consensus 591 -g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~ 660 (694)
T TIGR01846 591 -GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLST--VRACDR 660 (694)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHH--HHhCCE
Confidence 35799999999999999999999999999999999999999999999874 68999999999963 355787
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=280.17 Aligned_cols=184 Identities=23% Similarity=0.307 Sum_probs=146.6
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~-----------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 72 (207)
T cd03369 6 EIEVENLSVRYAP-----------DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA--EEGKIEIDGIDI 72 (207)
T ss_pred eEEEEEEEEEeCC-----------CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCeEEECCEEh
Confidence 5888999887631 123599999999999999999999999999999999998765 379999999875
Q ss_pred Ch---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000907 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 816 (1230)
.. ...++.++|++|++.+++ .|++||+.+.. .... +.+.+.++ + +. ....||||
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~----~~~~~~l~---~----~~-----~~~~LS~G 129 (207)
T cd03369 73 STIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSD----EEIYGALR---V----SE-----GGLNLSQG 129 (207)
T ss_pred HHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccC------CCCH----HHHHHHhh---c----cC-----CCCcCCHH
Confidence 32 234568999999998776 59999996421 1111 11233333 2 21 24579999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. +|+|+|++||++.. +.. .|+
T Consensus 130 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~-~~~-~d~ 192 (207)
T cd03369 130 QRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRT-IID-YDK 192 (207)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-Hhh-CCE
Confidence 9999999999999999999999999999999999999999985 58999999999874 323 565
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=275.92 Aligned_cols=175 Identities=24% Similarity=0.380 Sum_probs=152.2
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh-------hcccceEEEEccCCccCCCCCH
Q 000907 691 GVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-------ETFTRISGYCEQNDIHSPYVTV 763 (1230)
Q Consensus 691 ~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~ltv 763 (1230)
+++++.+.--++||-|+||||||||+|+|+|...|. .|.|.+||....+ ..-+|++|||+||-.+||++||
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd--eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD--EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc--ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 567777775799999999999999999999988764 7999999975321 2346889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCC
Q 000907 764 YESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 843 (1230)
Q Consensus 764 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgL 843 (1230)
+.||.|+.+.- .....+++.+.||+.|+.+++ +..|||||||||+|+|||+++|++|+||||.++|
T Consensus 94 rgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~-----P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL 159 (352)
T COG4148 94 RGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRY-----PGTLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred ecchhhhhccc---------chHhHHHHHHHhCcHHHHhhC-----CCccCcchhhHHHHHHHHhcCCCeeeecCchhhc
Confidence 99999985421 233468899999999999887 4479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 844 DARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 844 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|-..+.+++-.|.++.++ +.-|+.+||.+. |+..+-|+
T Consensus 160 D~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~ 198 (352)
T COG4148 160 DLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADR 198 (352)
T ss_pred ccchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhhe
Confidence 999999999999999866 889999999775 78888888
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-31 Score=325.00 Aligned_cols=196 Identities=22% Similarity=0.325 Sum_probs=159.3
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|++++++. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 313 ~I~~~~v~~~y~~-----------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p--~~G~i~~~g~~~ 379 (569)
T PRK10789 313 ELDVNIRQFTYPQ-----------TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDV--SEGDIRFHDIPL 379 (569)
T ss_pred cEEEEEEEEECCC-----------CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCEEEECCEEH
Confidence 5899999998741 234699999999999999999999999999999999998775 379999999986
Q ss_pred Ch---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCC
Q 000907 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-------PLRQALVGLPG 809 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~~ 809 (1230)
.. ..+++.++|++|++.+++ .|++||+.++. ...+. +.++++++..++. +-.|+.+|..
T Consensus 380 ~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~-----~~~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~- 448 (569)
T PRK10789 380 TKLQLDSWRSRLAVVSQTPFLFS-DTVANNIALGR-----PDATQ----QEIEHVARLASVHDDILRLPQGYDTEVGER- 448 (569)
T ss_pred hhCCHHHHHhheEEEccCCeecc-ccHHHHHhcCC-----CCCCH----HHHHHHHHHcCCHHHHHhCcCcccceecCC-
Confidence 43 456788999999998886 59999997641 11222 2345555555543 3346666654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
...||||||||++|||||+++|++++|||||++||+.++..+.+.|+++. +|+|+|+++|+++ ....+|+
T Consensus 449 g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~ 518 (569)
T PRK10789 449 GVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASE 518 (569)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCE
Confidence 35699999999999999999999999999999999999999999999874 6899999999985 3355676
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-31 Score=327.90 Aligned_cols=197 Identities=23% Similarity=0.362 Sum_probs=160.6
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++.. +++.+|+|+|++++|||.++|+|+||||||||+|+|+|..++ .+|+|.+||.++
T Consensus 337 ~i~~~~v~f~y~~~----------~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p--~~G~I~i~g~~i 404 (576)
T TIGR02204 337 EIEFEQVNFAYPAR----------PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDP--QSGRILLDGVDL 404 (576)
T ss_pred eEEEEEEEEECCCC----------CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCEEH
Confidence 68999999988521 124699999999999999999999999999999999998775 379999999886
Q ss_pred C---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCC
Q 000907 740 N---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLPG 809 (1230)
Q Consensus 740 ~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~ 809 (1230)
+ ...+++.++|+||++.+++ .|++||+.++. + +.+ ++.++++++..++.+ -.|+.+|+.
T Consensus 405 ~~~~~~~~~~~i~~~~Q~~~lf~-~Ti~~Ni~~~~----~-~~~----~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~- 473 (576)
T TIGR02204 405 RQLDPAELRARMALVPQDPVLFA-ASVMENIRYGR----P-DAT----DEEVEAAARAAHAHEFISALPEGYDTYLGER- 473 (576)
T ss_pred HhcCHHHHHHhceEEccCCcccc-ccHHHHHhcCC----C-CCC----HHHHHHHHHHcCcHHHHHhCCCCCCceeCCC-
Confidence 4 3456788999999998775 69999997641 1 122 233566666666543 235555553
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
...||||||||++||||++++|++++||||||+||+.+++.+.+.|+++. +++|+|++||+++ ....+|+
T Consensus 474 g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~ 543 (576)
T TIGR02204 474 GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADR 543 (576)
T ss_pred CCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCE
Confidence 35699999999999999999999999999999999999999999999875 5899999999984 3466777
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=318.51 Aligned_cols=190 Identities=19% Similarity=0.230 Sum_probs=155.9
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||||+|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p--~~G~i~~~~~~~~ 68 (490)
T PRK10938 4 LQISQGTFRLS-------------DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPL--LSGERQSQFSHIT 68 (490)
T ss_pred EEEEeEEEEcC-------------CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCceEEECCcccc
Confidence 77888888763 34599999999999999999999999999999999998765 3799999987542
Q ss_pred h---hcccceEEEEccCCcc--C------CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 000907 741 Q---ETFTRISGYCEQNDIH--S------PYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPG 809 (1230)
Q Consensus 741 ~---~~~~~~~~~v~q~~~~--~------~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 809 (1230)
. ...++.++|++|++.. + ..+||+|++.+. ....++++++++.+++.+..+..+
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~---- 133 (490)
T PRK10938 69 RLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRF---- 133 (490)
T ss_pred cCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCc----
Confidence 2 2234568999998643 1 146888876431 112355788999999988777664
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+..|+
T Consensus 134 -~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~ 204 (490)
T PRK10938 134 -KYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQF 204 (490)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCE
Confidence 479999999999999999999999999999999999999999999999877999999999986 45566676
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=323.47 Aligned_cols=195 Identities=27% Similarity=0.301 Sum_probs=156.3
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++. ++.+|+|+|+++++||.+||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 334 ~i~~~~v~~~y~~------------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~~ 399 (585)
T TIGR01192 334 AVEFRHITFEFAN------------SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP--TVGQILIDGIDI 399 (585)
T ss_pred eEEEEEEEEECCC------------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCC--CCCEEEECCEEh
Confidence 5999999998741 23589999999999999999999999999999999998775 479999999876
Q ss_pred Ch---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCC
Q 000907 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-------PLRQALVGLPG 809 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~~ 809 (1230)
.. ..+++.++||+|++.+++ .|++||+.++. + ..+.++ +++.++..++. +-.|+.+|..
T Consensus 400 ~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~----~-~~~~~~----~~~a~~~~~~~~~i~~l~~g~~t~~~~~- 468 (585)
T TIGR01192 400 NTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGR----E-GATDEE----VYEAAKAAAAHDFILKRSNGYDTLVGER- 468 (585)
T ss_pred hhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCC----C-CCCHHH----HHHHHHHhCcHHHHHhccccccchhcCC-
Confidence 43 456788999999998876 69999998741 1 122222 33333333332 2335556554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
..+||||||||++|||||+++|++|+|||||+|||+.+++.+.+.|+++. +++|+|+++|+++. ...+|+
T Consensus 469 ~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~--~~~~d~ 538 (585)
T TIGR01192 469 GNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLST--VRNADL 538 (585)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHH--HHcCCE
Confidence 35799999999999999999999999999999999999999999998874 58999999999852 355776
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=314.57 Aligned_cols=202 Identities=24% Similarity=0.353 Sum_probs=168.4
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++.. .+.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.+||.++
T Consensus 4 ~l~~~nl~~~y~~~---------~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~i 72 (648)
T PRK10535 4 LLELKDIRRSYPSG---------EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKP--TSGTYRVAGQDV 72 (648)
T ss_pred EEEEeeEEEEeCCC---------CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEc
Confidence 47899999887410 1235699999999999999999999999999999999998765 379999999886
Q ss_pred Ch---hc----ccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 000907 740 NQ---ET----FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNG 812 (1230)
Q Consensus 740 ~~---~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 812 (1230)
.. .. .++.++|++|+..+++.+|+.||+.+..... .....+.++++.++++.+|+.+..|+.. ..
T Consensus 73 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~-----~~ 144 (648)
T PRK10535 73 ATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQP-----SQ 144 (648)
T ss_pred CcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCc-----cc
Confidence 43 11 2467999999999999999999998764322 1233445567889999999988766653 47
Q ss_pred CCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 813 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||+|||||++|||+|+.+|++|+|||||+|||+.+++.+.+.|++++++|+|+|+++|++.. .+..|+
T Consensus 145 LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~--~~~~d~ 212 (648)
T PRK10535 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQV--AAQAER 212 (648)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHH--HHhCCE
Confidence 99999999999999999999999999999999999999999999987779999999999862 245666
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=289.55 Aligned_cols=196 Identities=23% Similarity=0.299 Sum_probs=150.0
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++++|+++.++. ..+.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+
T Consensus 18 ~~i~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~~ 84 (257)
T cd03288 18 GEIKIHDLCVRYEN-----------NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI--FDGKIVIDGID 84 (257)
T ss_pred ceEEEEEEEEEeCC-----------CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCC--CCCeEEECCEE
Confidence 36899999988741 124699999999999999999999999999999999998764 47999999987
Q ss_pred cCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCC
Q 000907 739 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQ-------ALVGLP 808 (1230)
Q Consensus 739 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-------~~~~~~ 808 (1230)
+.. ...++.++|++|++.+++ .|++||+.... .... +.+++.++..++.+..+ +..+.
T Consensus 85 i~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~------~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~- 152 (257)
T cd03288 85 ISKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPEC------KCTD----DRLWEALEIAQLKNMVKSLPGGLDAVVTE- 152 (257)
T ss_pred hhhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCC------CCCH----HHHHHHHHHhCcHHHHhhcccccCcEecc-
Confidence 642 245678999999998776 59999875321 1111 11233333333332211 11211
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
....||||||||++|||||+.+|++|+|||||+|||+.++..+.+.++++. +++|+|+++|++.. +.. .|+
T Consensus 153 ~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~-~~~-~dr 223 (257)
T cd03288 153 GGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVST-ILD-ADL 223 (257)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHH-HHh-CCE
Confidence 245799999999999999999999999999999999999999999998874 58999999999874 333 555
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-30 Score=282.34 Aligned_cols=171 Identities=22% Similarity=0.221 Sum_probs=140.7
Q ss_pred EeeceEEEEe-----CCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChhcccceEEEEccCCccCCCCC
Q 000907 688 LLNGVSGAFR-----PGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVT 762 (1230)
Q Consensus 688 iL~~vs~~i~-----~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lt 762 (1230)
.++|++++++ +||+++|+||||||||||+++|+|..++ .+|+|.++|. .++|++|+....+.+|
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p--~~G~i~~~g~---------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKP--DEGDIEIELD---------TVSYKPQYIKADYEGT 77 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCc---------eEEEecccccCCCCCC
Confidence 5556666665 7999999999999999999999998765 3799999884 5899999987777899
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCC
Q 000907 763 VYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 842 (1230)
Q Consensus 763 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsg 842 (1230)
|+|++.+...... . .....+++++.+++.+..++.+ ..||||||||++||++|+.+|++++|||||++
T Consensus 78 v~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDREV-----PELSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999876432110 1 1223577899999987766653 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 843 LDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 843 LD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||+.++..+.+.|+++++ .|+|||+++|++. .+....|+
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~ 185 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADR 185 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 999999999999999875 4899999999976 44556676
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-30 Score=317.84 Aligned_cols=193 Identities=20% Similarity=0.258 Sum_probs=155.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|++++++. ++.+|+|+|+++++||.+||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 322 ~i~~~~v~f~y~~------------~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~~ 387 (547)
T PRK10522 322 TLELRNVTFAYQD------------NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP--QSGEILLDGKPV 387 (547)
T ss_pred eEEEEEEEEEeCC------------CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEC
Confidence 6999999998841 23599999999999999999999999999999999998775 479999999986
Q ss_pred Ch---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHH
Q 000907 740 NQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTE 816 (1230)
Q Consensus 740 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 816 (1230)
.. ..+++.++||+|++.+++ .|++|| . . ...++.+++.++.+++.+..+...|.....+||||
T Consensus 388 ~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n---~------~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgG 453 (547)
T PRK10522 388 TAEQPEDYRKLFSAVFTDFHLFD-QLLGPE---G------K----PANPALVEKWLERLKMAHKLELEDGRISNLKLSKG 453 (547)
T ss_pred CCCCHHHHhhheEEEecChhHHH-Hhhccc---c------C----chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHH
Confidence 53 456788999999987765 466665 0 1 12234567888888887543321111112479999
Q ss_pred HHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 817 qrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||++|||||+++|++|+||||||+||+.+++.+.+.+.+..+ .|+|+|+++|+++ ....+|+
T Consensus 454 q~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~ 518 (547)
T PRK10522 454 QKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADR 518 (547)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCE
Confidence 99999999999999999999999999999999999999876643 5899999999984 4567776
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-29 Score=311.79 Aligned_cols=103 Identities=21% Similarity=0.333 Sum_probs=84.9
Q ss_pred HHHHcCCccc-ccccccCCccccCcccccchhHHHHHHhcCC--ceeeeeCCCcccchHHHHHHHHHHHHHhhhcCCEEE
Q 000907 108 ILKVLDLDVC-ADTVVGDEMLRGISGGQRKRVTTGEMLVGPA--HALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTAL 184 (1230)
Q Consensus 108 il~~lgL~~~-~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p--~ILlLDEPTSGLDs~sa~~I~~~L~~la~~~~~t~i 184 (1230)
.|..+||..- .|..+ ..|||||||||.||++|..+| ++++|||||+|||+.+...+++.|+++.+ .|.|+|
T Consensus 470 ~L~~vgL~~l~l~r~~-----~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~-~G~TVI 543 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAA-----GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD-LGNTVI 543 (924)
T ss_pred hHhhccccccccCCCc-----CcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 3677888653 45444 469999999999999999986 89999999999999999999999999975 466666
Q ss_pred EEecCCChhHHhhccceEEe------cCCeEEEEcChhhH
Q 000907 185 ISLLQPAPEVYNLFDDIILV------SDGQIVYQGPLEHV 218 (1230)
Q Consensus 185 iti~qp~~~i~~lfD~I~vL------~~G~vv~~G~~~~l 218 (1230)
++.|. ...+ ..+|+|++| ++|++++.|+.+++
T Consensus 544 vVeHd-~~~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el 581 (924)
T TIGR00630 544 VVEHD-EETI-RAADYVIDIGPGAGIHGGEVVASGTPEEI 581 (924)
T ss_pred EEECC-HHHH-hhCCEEEEecccccCCCCEEeeccCHHHH
Confidence 65544 5555 489999999 89999999887654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=276.22 Aligned_cols=182 Identities=27% Similarity=0.391 Sum_probs=151.0
Q ss_pred ceeEEEEECCccCCCCc------ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhccCCCch
Q 000907 13 KASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDAD 86 (1230)
Q Consensus 13 ~~~G~V~vnG~~~~~~~------~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~~~~~~~ 86 (1230)
-.+|+|.+||.++.... .|+.+|++.|+..|+.+.||.||+.|..++.+. ++
T Consensus 58 PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~----------~k------------ 115 (339)
T COG1135 58 PTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGV----------PK------------ 115 (339)
T ss_pred CCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcCC----------CH------------
Confidence 45899999998887543 358999999999999999999999998776541 11
Q ss_pred hhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcccchHHHH
Q 000907 87 IDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTF 166 (1230)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGLDs~sa~ 166 (1230)
++.+++|.++|+.+||++.+|. ...+|||||||||+|||||+.+|+||++|||||+|||.|+.
T Consensus 116 ------------~ei~~RV~elLelVgL~dk~~~-----yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~ 178 (339)
T COG1135 116 ------------AEIKQRVAELLELVGLSDKADR-----YPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQ 178 (339)
T ss_pred ------------HHHHHHHHHHHHHcCChhhhcc-----CchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHH
Confidence 1234568999999999999985 44679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCCchhhhhhh
Q 000907 167 HIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQEV 242 (1230)
Q Consensus 167 ~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~~f~~~G~~~p~~~n~ad~l~~~ 242 (1230)
.|++.|+++.+..|-|+ +.|+|-+.-+...|||++||++|+++++|+..++ |..|.+.-.-+|+.+.
T Consensus 179 sIL~LL~~In~~lglTI-vlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v--------F~~Pk~~~t~~fi~~~ 245 (339)
T COG1135 179 SILELLKDINRELGLTI-VLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV--------FANPKHAITQEFIGET 245 (339)
T ss_pred HHHHHHHHHHHHcCCEE-EEEechHHHHHHHhhhheEeeCCEEEEeccHHHh--------hcCcchHHHHHHHHhh
Confidence 99999999998776554 5566778899999999999999999999999987 2345544444454443
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-30 Score=292.58 Aligned_cols=168 Identities=28% Similarity=0.380 Sum_probs=143.5
Q ss_pred EEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh-hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHH
Q 000907 704 LMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSK 782 (1230)
Q Consensus 704 i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~ 782 (1230)
|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+||+||+.|....+ .....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p--~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQP--DSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCC--CceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHH
Confidence 6899999999999999998765 47999999988643 223567999999999999999999999875432 12334
Q ss_pred HHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 000907 783 TREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT- 861 (1230)
Q Consensus 783 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~- 861 (1230)
+.+++++++++.+++.+..++.. +.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 44567889999999988777653 579999999999999999999999999999999999999999999998754
Q ss_pred CCEEEEEecCCCHHHHHHHhc
Q 000907 862 GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 862 g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|+|+|++||++. ++..+.|+
T Consensus 151 g~tiiivTHd~~-e~~~~~d~ 170 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDR 170 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCE
Confidence 899999999986 66777887
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-28 Score=311.74 Aligned_cols=184 Identities=29% Similarity=0.445 Sum_probs=163.9
Q ss_pred EeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh----hcccceEEEEccCCccCCCCCH
Q 000907 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ----ETFTRISGYCEQNDIHSPYVTV 763 (1230)
Q Consensus 688 iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~~~~~~ltv 763 (1230)
+++++|+.+++||+.|++|+|||||||++|+|+|..++ .+|++.++|.++.. .+.++.+|||||+|.+++.+|.
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~--t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~ 657 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKP--TSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTG 657 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccC--CcceEEEecCccccccchhhhhhhcccCCchhhhhhhccH
Confidence 99999999999999999999999999999999998775 47999999988643 2367789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCC
Q 000907 764 YESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 843 (1230)
Q Consensus 764 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgL 843 (1230)
+|++.+.+++|. ....+.++.++.+++.++|.+.+++.++ .+|||+|||+++|.||+.+|++++|||||+|+
T Consensus 658 rEhL~~~arlrG---~~~~di~~~v~~ll~~~~L~~~~~~~~~-----~ySgG~kRkLs~aialig~p~vi~LDEPstGm 729 (885)
T KOG0059|consen 658 REHLEFYARLRG---LPRSDIGSAIEKLLRLVGLGPYANKQVR-----TYSGGNKRRLSFAIALIGDPSVILLDEPSTGL 729 (885)
T ss_pred HHHHHHHHHHcC---CChhHHHHHHHHHHHHcCChhhhccchh-----hCCCcchhhHHHHHHHhcCCCEEEecCCCCCC
Confidence 999999999885 3444555669999999999999998854 69999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 844 DARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 844 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||.+++.++++++++.++|+.+|+|||--. |.-.+.||
T Consensus 730 DP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR 767 (885)
T KOG0059|consen 730 DPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTR 767 (885)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhh
Confidence 999999999999999888889999999543 44556787
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-30 Score=252.77 Aligned_cols=192 Identities=24% Similarity=0.338 Sum_probs=160.1
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECC-ee
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG-YP 738 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g-~~ 738 (1230)
.++.+|++.++ ++..+|+|+||++.|||+-+|+|||||||||+|++|+|...+ ..|++.++| .+
T Consensus 5 iL~~~~vsVsF-------------~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp--~~G~v~f~g~~d 69 (249)
T COG4674 5 ILYLDGVSVSF-------------GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP--QEGEVLFDGDTD 69 (249)
T ss_pred eEEEeceEEEE-------------cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCC--CcceEEEcCchh
Confidence 46777777765 567899999999999999999999999999999999997664 379999999 45
Q ss_pred cCh----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCC------CCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000907 739 KNQ----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS------SEVNSKTREMFVEEVMELVELNPLRQALVGLP 808 (1230)
Q Consensus 739 ~~~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~------~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 808 (1230)
+.. ...+..+|-=+|.+..|..+||+|||+.+.....+ ... ..+.+++++++++..||.+.++...+
T Consensus 70 l~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~-~~~e~~ride~La~igL~~~~~~~A~-- 146 (249)
T COG4674 70 LTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARL-RAEERRRIDELLATIGLGDERDRLAA-- 146 (249)
T ss_pred hccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhc-ChhHHHHHHHHHHHcccchhhhhhhh--
Confidence 432 22345678889999999999999999987432110 111 12344679999999999999887755
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
.||.||||++.|++-++.+|++|+||||++|+-.+...+.-++|+.++ .+++|+++.||-.
T Consensus 147 ---~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la-~~hsilVVEHDM~ 207 (249)
T COG4674 147 ---LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLA-GKHSILVVEHDMG 207 (249)
T ss_pred ---hhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHh-cCceEEEEeccHH
Confidence 599999999999999999999999999999999999999999999997 4789999999864
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-30 Score=259.49 Aligned_cols=180 Identities=23% Similarity=0.325 Sum_probs=145.8
Q ss_pred ceeEEEEECCccCCCC----cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhccCCCchhh
Q 000907 13 KASGKVTYNGHDMHEF----VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADID 88 (1230)
Q Consensus 13 ~~~G~V~vnG~~~~~~----~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 88 (1230)
-.+|+|.++|.++... ..|+.+|+|.|+-.|||.+||.||+..+-.. +...+
T Consensus 54 ~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~---------v~~~~--------------- 109 (240)
T COG1126 54 PDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK---------VKKLS--------------- 109 (240)
T ss_pred CCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH---------HcCCC---------------
Confidence 4589999999876432 2478999999999999999999999987431 11111
Q ss_pred HHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcccchHHHHHH
Q 000907 89 VFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHI 168 (1230)
Q Consensus 89 ~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGLDs~sa~~I 168 (1230)
.+++++....+|+.+||.+.+|. +...|||||||||+|||||+-+|+++++|||||+|||....+|
T Consensus 110 ---------k~eA~~~A~~lL~~VGL~~ka~~-----yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EV 175 (240)
T COG1126 110 ---------KAEAREKALELLEKVGLADKADA-----YPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEV 175 (240)
T ss_pred ---------HHHHHHHHHHHHHHcCchhhhhh-----CccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHH
Confidence 12234456779999999999995 4457999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCCchhhhh
Q 000907 169 VNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQ 240 (1230)
Q Consensus 169 ~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~~f~~~G~~~p~~~n~ad~l~ 240 (1230)
.+.++++|+ .|.|-+ .++|-+.-+.+.+|||+.|++|++++.|++++. |..|.+.-..+|+.
T Consensus 176 L~vm~~LA~-eGmTMi-vVTHEM~FAr~VadrviFmd~G~iie~g~p~~~--------f~~p~~~R~~~FL~ 237 (240)
T COG1126 176 LDVMKDLAE-EGMTMI-IVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF--------FDNPKSERTRQFLS 237 (240)
T ss_pred HHHHHHHHH-cCCeEE-EEechhHHHHHhhheEEEeeCCEEEEecCHHHH--------hcCCCCHHHHHHHH
Confidence 999999997 455544 466778999999999999999999999998876 33555544455554
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-29 Score=279.29 Aligned_cols=184 Identities=21% Similarity=0.307 Sum_probs=141.6
Q ss_pred CCceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECC
Q 000907 657 EPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG 736 (1230)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g 736 (1230)
.+..++++|+++. .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|
T Consensus 36 ~~~~l~i~nls~~---------------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p--~~G~I~i~g 98 (282)
T cd03291 36 DDNNLFFSNLCLV---------------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP--SEGKIKHSG 98 (282)
T ss_pred CCCeEEEEEEEEe---------------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECC
Confidence 3446899999873 13599999999999999999999999999999999998765 379999988
Q ss_pred eecChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCCC
Q 000907 737 YPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR-------QALVGLPG 809 (1230)
Q Consensus 737 ~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~~~~~~ 809 (1230)
.++|++|++.+++. ||+||+.+.... .. ..+.+.++.+++.+.. ++.++. .
T Consensus 99 ----------~i~yv~q~~~l~~~-tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~-~ 156 (282)
T cd03291 99 ----------RISFSSQFSWIMPG-TIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLGE-G 156 (282)
T ss_pred ----------EEEEEeCccccccc-CHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceecC-C
Confidence 38999999887774 999999864210 11 1122334444443221 122221 2
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTV-RNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l-~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
...||||||||++||++|+.+|++|+|||||+|||+.++..+.+.+ +++. ++.|||+++|++.. + ...|+
T Consensus 157 ~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~ 227 (282)
T cd03291 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADK 227 (282)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCE
Confidence 3579999999999999999999999999999999999999999865 5554 57999999999874 3 45565
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-29 Score=311.18 Aligned_cols=199 Identities=17% Similarity=0.219 Sum_probs=158.0
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++++|++++++... ..++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 336 ~~i~~~~v~f~y~~~~--------~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p--~~G~i~~~g~~ 405 (555)
T TIGR01194 336 DSIELKDVHMNPKAPE--------GSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIP--QEGEILLDGAA 405 (555)
T ss_pred ceEEEEEEEEEeCCCC--------CCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEE
Confidence 4699999999985210 0123699999999999999999999999999999999998775 47999999998
Q ss_pred cCh---hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc-ccCCCCCCCC
Q 000907 739 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL-VGLPGVNGLS 814 (1230)
Q Consensus 739 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~lS 814 (1230)
+.. ..+++.++||+|++.++. .|+++|.. + ...++.++++++.+++.+..+.. -|......||
T Consensus 406 i~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n~~-------~-----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LS 472 (555)
T TIGR01194 406 VSADSRDDYRDLFSAIFADFHLFD-DLIGPDEG-------E-----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALS 472 (555)
T ss_pred CCCCCHHHHHhhCcEEccChhhhh-hhhhcccc-------c-----chhHHHHHHHHHHcCCchhhcccccccCCcccCC
Confidence 653 456788999999988775 47777731 1 12234577889999887654432 2222235799
Q ss_pred HHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHH-HHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVR-NTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~-~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||++|||||+++|++|+|||||++||+.+++.+.+.+. .+..+|+|+|+++|+++ ..+..|+
T Consensus 473 gGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~ 539 (555)
T TIGR01194 473 TGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQ 539 (555)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCE
Confidence 999999999999999999999999999999999999998664 45557899999999985 4567776
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-29 Score=285.03 Aligned_cols=181 Identities=29% Similarity=0.410 Sum_probs=152.5
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC--cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF--VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~--~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
||+|+|.+.+ .+|+|.++|.+.... ..++.+|||+|++.+++.+||+|||.|.+.+++...
T Consensus 48 lk~l~gl~~p---~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~-------------- 110 (293)
T COG1131 48 LKILAGLLKP---TSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK-------------- 110 (293)
T ss_pred HHHHhCCcCC---CceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh--------------
Confidence 4778888764 689999999998753 346789999999999999999999999999875321
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
...++.++++++.+||.+.++..+ +++|||||||++||.||+++|+++||||||+
T Consensus 111 --------------------~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~ 165 (293)
T COG1131 111 --------------------EEAEERIEELLELFGLEDKANKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTS 165 (293)
T ss_pred --------------------hHHHHHHHHHHHHcCCchhhCcch-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCc
Confidence 011235789999999999666555 5799999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHHHHHh
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFIS 224 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~~f~~ 224 (1230)
|||+.++.++++.|+++++..+.|+++ .+|...++..+||+|++|++|++++.|+.+++...+..
T Consensus 166 GLDp~~~~~~~~~l~~l~~~g~~tvli-ssH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 166 GLDPESRREIWELLRELAKEGGVTILL-STHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGG 230 (293)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCcEEEE-eCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHhhcc
Confidence 999999999999999999753345555 55667899999999999999999999999998776543
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-29 Score=337.64 Aligned_cols=207 Identities=21% Similarity=0.356 Sum_probs=163.7
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEEC-Cee
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITIS-GYP 738 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~-g~~ 738 (1230)
.++++|+++.|+.. .++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++ |.+
T Consensus 382 ~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~i~~g~~ 449 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR----------KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDP--TEGDIIINDSHN 449 (1466)
T ss_pred cEEEEEEEEEcCCC----------CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccC--CCCeEEEeCCcc
Confidence 69999999988521 124699999999999999999999999999999999998775 47999994 566
Q ss_pred cC---hhcccceEEEEccCCccCCCCCHHHHHHHHHHh-cC--------CC-----------------------------
Q 000907 739 KN---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWL-RL--------SS----------------------------- 777 (1230)
Q Consensus 739 ~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~-~~--------~~----------------------------- 777 (1230)
+. ...+++.+|||+|++.+++ .|++||+.++... +. ..
T Consensus 450 i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1466)
T PTZ00265 450 LKDINLKWWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNT 528 (1466)
T ss_pred hhhCCHHHHHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccc
Confidence 43 3456788999999999987 5999999986310 00 00
Q ss_pred -CC---------CHHHHHHHHHHHHHHcCCCcc-------ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCC
Q 000907 778 -EV---------NSKTREMFVEEVMELVELNPL-------RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 840 (1230)
Q Consensus 778 -~~---------~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPt 840 (1230)
.. .....++.+.++++.+++.+. .||.+|.. ...||||||||++|||||+++|+||+|||||
T Consensus 529 ~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~-g~~LSGGQkQRiaIARAll~~P~ILlLDEpT 607 (1466)
T PTZ00265 529 TDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSN-ASKLSGGQKQRISIARAIIRNPKILILDEAT 607 (1466)
T ss_pred cchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 00 001123456677777766543 35666654 4579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 841 SGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 841 sgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|+||+.++..+.+.|+++.+ +|+|+|+++|+++. + ...|+
T Consensus 608 SaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~-i-~~aD~ 648 (1466)
T PTZ00265 608 SSLDNKSEYLVQKTINNLKGNENRITIIIAHRLST-I-RYANT 648 (1466)
T ss_pred cccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH-H-HhCCE
Confidence 99999999999999999875 58999999999973 3 67887
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-29 Score=306.12 Aligned_cols=190 Identities=23% Similarity=0.312 Sum_probs=152.7
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++++. ++.+|+|+||+|++||+++|+||||||||||||+|+|..++ .+|+|.++|.
T Consensus 2 l~i~~ls~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~~--- 63 (530)
T PRK15064 2 LSTANITMQFG-------------AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEP--SAGNVSLDPN--- 63 (530)
T ss_pred EEEEEEEEEeC-------------CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCC---
Confidence 56788888762 34699999999999999999999999999999999998765 3799999873
Q ss_pred hhcccceEEEEccCCccCCCCCHHHHHHHHHH-h----------c-CCCC-C----------------CHHHHHHHHHHH
Q 000907 741 QETFTRISGYCEQNDIHSPYVTVYESLLYSAW-L----------R-LSSE-V----------------NSKTREMFVEEV 791 (1230)
Q Consensus 741 ~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~-~----------~-~~~~-~----------------~~~~~~~~~~~~ 791 (1230)
+.+||++|++.+++.+||+|++.++.. . . .+.. . ...+.+++++++
T Consensus 64 -----~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (530)
T PRK15064 64 -----ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGEL 138 (530)
T ss_pred -----CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 358999999988999999999986421 0 0 0000 0 001123567889
Q ss_pred HHHcCCCccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q 000907 792 MELVELNPLR-QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIH 870 (1230)
Q Consensus 792 l~~l~l~~~~-~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H 870 (1230)
++.+|+.+.. +.. +..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||+++|
T Consensus 139 l~~~gl~~~~~~~~-----~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsH 210 (530)
T PRK15064 139 LLGVGIPEEQHYGL-----MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISH 210 (530)
T ss_pred HHhCCCChhHhcCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeC
Confidence 9999997533 233 347999999999999999999999999999999999999999999863 5899999999
Q ss_pred CCCHHHHHHHhc
Q 000907 871 QPSIDIFEAFDA 882 (1230)
Q Consensus 871 ~~~~~i~~~fd~ 882 (1230)
++. .+.+..|+
T Consensus 211 d~~-~~~~~~d~ 221 (530)
T PRK15064 211 DRH-FLNSVCTH 221 (530)
T ss_pred CHH-HHHhhcce
Confidence 987 45566777
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=304.37 Aligned_cols=191 Identities=25% Similarity=0.334 Sum_probs=152.9
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
-++++|+++.+. +++.+|+|+||+|++||+++|+|||||||||||++|+|..++ .+|+|.+++.
T Consensus 6 ~l~i~~l~~~y~------------~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p--~~G~i~~~~~-- 69 (556)
T PRK11819 6 IYTMNRVSKVVP------------PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FEGEARPAPG-- 69 (556)
T ss_pred EEEEeeEEEEeC------------CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCC--
Confidence 488899988763 135699999999999999999999999999999999998765 3799998752
Q ss_pred ChhcccceEEEEccCCccCCCCCHHHHHHHHHH-hc------------CCCCCCH--------------------HHHHH
Q 000907 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAW-LR------------LSSEVNS--------------------KTREM 786 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~-~~------------~~~~~~~--------------------~~~~~ 786 (1230)
..+|||+|++.+++.+||.||+.+... .+ ....... .+..+
T Consensus 70 ------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (556)
T PRK11819 70 ------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDS 143 (556)
T ss_pred ------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHH
Confidence 468999999999999999999987521 00 0000000 01134
Q ss_pred HHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q 000907 787 FVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVV 866 (1230)
Q Consensus 787 ~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi 866 (1230)
+++++++.+|+.. .+.. +..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||
T Consensus 144 ~~~~~l~~~gl~~-~~~~-----~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tvi 214 (556)
T PRK11819 144 QLEIAMDALRCPP-WDAK-----VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVV 214 (556)
T ss_pred HHHHHHHhCCCCc-ccCc-----hhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEE
Confidence 5778899999853 4544 3479999999999999999999999999999999999999999999876 25999
Q ss_pred EEecCCCHHHHHHHhc
Q 000907 867 CTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 867 ~~~H~~~~~i~~~fd~ 882 (1230)
++||++. .+-+..|+
T Consensus 215 iisHd~~-~~~~~~d~ 229 (556)
T PRK11819 215 AVTHDRY-FLDNVAGW 229 (556)
T ss_pred EEeCCHH-HHHhhcCe
Confidence 9999986 44456676
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-29 Score=274.85 Aligned_cols=178 Identities=22% Similarity=0.247 Sum_probs=145.3
Q ss_pred eEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEE-----------ECCeecChh--c-c--cceEEE
Q 000907 687 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNIT-----------ISGYPKNQE--T-F--TRISGY 750 (1230)
Q Consensus 687 ~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~~--~-~--~~~~~~ 750 (1230)
.+|+|+| .+++||+++|+|||||||||||++|+|..++ .+|+|. ++|.+.... . . ...++|
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p--~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 91 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKP--NLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIV 91 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCC--CCceEeeccccchhhhhccCchhhhhhHHhhhcccceee
Confidence 5899999 5999999999999999999999999998775 379995 778765321 1 1 124689
Q ss_pred EccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000907 751 CEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVAN 830 (1230)
Q Consensus 751 v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~ 830 (1230)
++|....++. ++.+++.+.. + ....++.++++++.+++.+..+.. +..||||||||++||++|+.+
T Consensus 92 ~~~~~~~~~~-~~~~~i~~~l--~------~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~laral~~~ 157 (255)
T cd03236 92 KPQYVDLIPK-AVKGKVGELL--K------KKDERGKLDELVDQLELRHVLDRN-----IDQLSGGELQRVAIAAALARD 157 (255)
T ss_pred ecchhccCch-HHHHHHHHHh--c------hhHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHHhC
Confidence 9998877774 7888876632 1 122345578899999998766654 347999999999999999999
Q ss_pred CCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 831 PSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 831 p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+..|+
T Consensus 158 p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~ 208 (255)
T cd03236 158 ADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDY 208 (255)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCE
Confidence 9999999999999999999999999999877999999999986 45556776
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=265.83 Aligned_cols=171 Identities=19% Similarity=0.175 Sum_probs=134.5
Q ss_pred eEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEE-ECCeecChhcccceEEEEccCCccCCCCCHHH
Q 000907 687 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNIT-ISGYPKNQETFTRISGYCEQNDIHSPYVTVYE 765 (1230)
Q Consensus 687 ~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~-~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e 765 (1230)
++|+|||+++++||+++|+||||||||||+++|+|..++ .+|+|. ++|... .+.++..+++.+|++|
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~--~sG~i~~~~~~~~----------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAP--DEGDFIGLRGDAL----------PLGANSFILPGLTGEE 68 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC--CCCCEEEecCcee----------ccccccccCCcCcHHH
Confidence 379999999999999999999999999999999998765 379986 776432 1234566788999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCH
Q 000907 766 SLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 845 (1230)
Q Consensus 766 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~ 845 (1230)
|+.+...... ....+. .+.+.+.+++....++.+ +.||+|||||++||+||+.+|++++|||||+++|+
T Consensus 69 nl~~~~~~~~---~~~~~~---~~~~~~~~~l~~~~~~~~-----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 69 NARMMASLYG---LDGDEF---SHFCYQLTQLEQCYTDRV-----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHHHHHcC---CCHHHH---HHHHHHHhChhHHhhchH-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 9988654331 222221 233445667776666654 46999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 846 RAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 846 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.++..+.+.+.+..+ ++|+|+++|++. .+....|+
T Consensus 138 ~~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~ 172 (213)
T PRK15177 138 ATQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHA 172 (213)
T ss_pred HHHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCe
Confidence 999999998865433 478999999987 45556665
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-29 Score=310.20 Aligned_cols=193 Identities=19% Similarity=0.262 Sum_probs=152.2
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.+++
T Consensus 451 ~i~~~nv~~~~~------------~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~--~~G~i~~~~--- 513 (659)
T TIGR00954 451 GIKFENIPLVTP------------NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPV--YGGRLTKPA--- 513 (659)
T ss_pred eEEEEeeEEECC------------CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEeecC---
Confidence 588999998663 124699999999999999999999999999999999998764 368888764
Q ss_pred ChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC----CCCCCCCH
Q 000907 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGL----PGVNGLST 815 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~----~~~~~lSg 815 (1230)
++.++||+|++.+++. |++||+.++........ ....++.++++++.+++.+..++..|. .....|||
T Consensus 514 -----~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSg 585 (659)
T TIGR00954 514 -----KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKR--RGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSG 585 (659)
T ss_pred -----CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhhc--cCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCH
Confidence 3578999999988876 99999987532110000 001134467889999987765443221 11357999
Q ss_pred HHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 816 Gqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||||++|||||+++|++++|||||+|||+.+++.+.+.+++ .|+|+|+++|+++. .+..|+
T Consensus 586 GqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~--~~~~d~ 647 (659)
T TIGR00954 586 GEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSL--WKYHEY 647 (659)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHH--HHhCCE
Confidence 999999999999999999999999999999999999998875 38999999999873 355665
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-28 Score=246.14 Aligned_cols=135 Identities=27% Similarity=0.423 Sum_probs=118.0
Q ss_pred EEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh
Q 000907 662 TFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 741 (1230)
+++|+++.+. +..+++++|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~~~---- 62 (144)
T cd03221 2 ELENLSKTYG-------------GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP--DEGIVTWGST---- 62 (144)
T ss_pred EEEEEEEEEC-------------CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCe----
Confidence 4667776552 23699999999999999999999999999999999998765 4799999984
Q ss_pred hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHH
Q 000907 742 ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRL 821 (1230)
Q Consensus 742 ~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl 821 (1230)
+.++|++| ||+|||||+
T Consensus 63 ----~~i~~~~~-----------------------------------------------------------lS~G~~~rv 79 (144)
T cd03221 63 ----VKIGYFEQ-----------------------------------------------------------LSGGEKMRL 79 (144)
T ss_pred ----EEEEEEcc-----------------------------------------------------------CCHHHHHHH
Confidence 46899988 899999999
Q ss_pred HHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 822 TIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 822 ~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+|||||+.+|++++|||||+|||+.++..+.+.++++ ++|+++++|++. ++.+..|+
T Consensus 80 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~ 136 (144)
T cd03221 80 ALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATK 136 (144)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999876 479999999986 44444565
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-29 Score=255.48 Aligned_cols=168 Identities=24% Similarity=0.340 Sum_probs=146.9
Q ss_pred ceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhccCCCchhhH
Q 000907 13 KASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDV 89 (1230)
Q Consensus 13 ~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 89 (1230)
..+|+|++||.++.+.. .|+.+|||-|+--|||++||.|||.+--++++..+
T Consensus 53 pt~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k------------------------- 107 (309)
T COG1125 53 PTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDK------------------------- 107 (309)
T ss_pred CCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCH-------------------------
Confidence 45899999999998754 47999999999999999999999999877765211
Q ss_pred HHHHHHhhccchhhHHHHHHHHcCCcc--cccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcccchHHHHH
Q 000907 90 FMKAVVREGQEANVITDYILKVLDLDV--CADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFH 167 (1230)
Q Consensus 90 ~~~~~~~~~~~~~~~vd~il~~lgL~~--~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGLDs~sa~~ 167 (1230)
++++++++++|+.+||+. .+| +....|||||+|||-+||||+.+|+|+++|||.++||+.++.+
T Consensus 108 ---------~~i~~r~~ELl~lvgL~p~~~~~-----RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~ 173 (309)
T COG1125 108 ---------ERIKKRADELLDLVGLDPSEYAD-----RYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQ 173 (309)
T ss_pred ---------HHHHHHHHHHHHHhCCCHHHHhh-----cCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHH
Confidence 123346899999999975 333 6778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 168 IVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 168 I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
+++-++++.+..++|+| .++|..+|.+.++|||++|++|+++.+|+++++..
T Consensus 174 lQ~e~~~lq~~l~kTiv-fVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 174 LQEEIKELQKELGKTIV-FVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred HHHHHHHHHHHhCCEEE-EEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 99999999988777655 57789999999999999999999999999999864
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=252.93 Aligned_cols=148 Identities=22% Similarity=0.331 Sum_probs=121.4
Q ss_pred ceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChhcccceEEEEccCCccCCCCCHH
Q 000907 685 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVY 764 (1230)
Q Consensus 685 ~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~ 764 (1230)
.+.+|+|+|+++++||+++|+||||||||||||+|.+ .+|++.++|.... ..++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~~--~~~~~~~~~~q----------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFLPK--FSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCcccc--cccccEEEEhH-----------
Confidence 4579999999999999999999999999999999964 2588888876321 12334677776
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhC--CCEeEEeCCCC
Q 000907 765 ESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL-RQALVGLPGVNGLSTEQRKRLTIAVELVAN--PSIIFMDEPTS 841 (1230)
Q Consensus 765 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~lSgGqrqrl~ia~al~~~--p~illlDEPts 841 (1230)
.+.++.+++... .+.. .+.||||||||++||++|+.+ |++++|||||+
T Consensus 68 ------------------------~~~l~~~~L~~~~~~~~-----~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 68 ------------------------LQFLIDVGLGYLTLGQK-----LSTLSGGELQRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred ------------------------HHHHHHcCCCccccCCC-----cCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 235667777642 3443 457999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 842 GLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 842 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|||+.++..+.+.|+++++.|+|||+++|++.. + +..|+
T Consensus 119 ~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~-~-~~~d~ 157 (176)
T cd03238 119 GLHQQDINQLLEVIKGLIDLGNTVILIEHNLDV-L-SSADW 157 (176)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCE
Confidence 999999999999999987779999999999863 3 55666
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=253.83 Aligned_cols=130 Identities=27% Similarity=0.363 Sum_probs=113.9
Q ss_pred CceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChhcccceEEEEccCCccCCCCCH
Q 000907 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTV 763 (1230)
Q Consensus 684 ~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv 763 (1230)
+++.+++++ +++++||+++|+||||||||||+|+|+|..++ .+|+|.++|.+ ++|++|+..
T Consensus 11 ~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~---------i~~~~q~~~------- 71 (177)
T cd03222 11 GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIP--NGDNDEWDGIT---------PVYKPQYID------- 71 (177)
T ss_pred CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CCcEEEECCEE---------EEEEcccCC-------
Confidence 456789985 89999999999999999999999999998765 37999999853 678887431
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCC
Q 000907 764 YESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 843 (1230)
Q Consensus 764 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgL 843 (1230)
||||||||++|||+|+.+|++++|||||+||
T Consensus 72 -------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~L 102 (177)
T cd03222 72 -------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYL 102 (177)
T ss_pred -------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCC-CEEEEEecCCCHHHHHHHhc
Q 000907 844 DARAAAVVMRTVRNTVDTG-RTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 844 D~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~i~~~fd~ 882 (1230)
|+.++..+.+.++++++++ +|+|+++|++. .+.+..|+
T Consensus 103 D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~ 141 (177)
T cd03222 103 DIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDR 141 (177)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCE
Confidence 9999999999999987664 99999999985 34455676
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-28 Score=301.51 Aligned_cols=191 Identities=25% Similarity=0.341 Sum_probs=150.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
-++++|++++++ +++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.+++
T Consensus 4 ~i~~~nls~~~~------------~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p--~~G~i~~~~--- 66 (552)
T TIGR03719 4 IYTMNRVSKVVP------------PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FNGEARPAP--- 66 (552)
T ss_pred EEEEeeEEEecC------------CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecC---
Confidence 478889988763 134699999999999999999999999999999999998765 379999875
Q ss_pred ChhcccceEEEEccCCccCCCCCHHHHHHHHHHh-cC-----------CCCCCHH---------------------HHHH
Q 000907 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWL-RL-----------SSEVNSK---------------------TREM 786 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~-~~-----------~~~~~~~---------------------~~~~ 786 (1230)
...+||++|++.+++.+||.||+.++... +. ......+ ....
T Consensus 67 -----~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (552)
T TIGR03719 67 -----GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDR 141 (552)
T ss_pred -----CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHH
Confidence 24689999999999999999999875311 00 0000010 0113
Q ss_pred HHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q 000907 787 FVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVV 866 (1230)
Q Consensus 787 ~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi 866 (1230)
+++++++.+++.. .+.. ++.||||||||++||++|+.+|++|||||||++||+.++..+.+.|++. +.|||
T Consensus 142 ~~~~~l~~~~l~~-~~~~-----~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvI 212 (552)
T TIGR03719 142 KLEIAMDALRCPP-WDAD-----VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVV 212 (552)
T ss_pred HHHHHHhhCCCCc-ccCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEE
Confidence 4566777777743 3443 3579999999999999999999999999999999999999999999875 35999
Q ss_pred EEecCCCHHHHHHHhc
Q 000907 867 CTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 867 ~~~H~~~~~i~~~fd~ 882 (1230)
++||++. .+-...|+
T Consensus 213 iisHd~~-~~~~~~d~ 227 (552)
T TIGR03719 213 AVTHDRY-FLDNVAGW 227 (552)
T ss_pred EEeCCHH-HHHhhcCe
Confidence 9999986 44455676
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-28 Score=271.10 Aligned_cols=177 Identities=18% Similarity=0.231 Sum_probs=133.2
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.+.++|+++.++. +..++++++|-+.+++.+|++||||||||||||++.|...| ..|.|.-.-+.
T Consensus 389 vi~~~nv~F~y~~------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p--~~G~vs~~~H~- 453 (614)
T KOG0927|consen 389 VIMVQNVSFGYSD------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP--TIGMVSRHSHN- 453 (614)
T ss_pred eEEEeccccCCCC------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc--ccccccccccc-
Confidence 5788899887742 22699999999999999999999999999999999998765 35766433221
Q ss_pred ChhcccceEEEEccC--CccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHH
Q 000907 740 NQETFTRISGYCEQN--DIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~--~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGq 817 (1230)
.+++..|. +.+.-..++-|++.-.. ....+.+.+..++..+||....+.. ..++||+||
T Consensus 454 -------~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~Gq 514 (614)
T KOG0927|consen 454 -------KLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVV----PMSQLSDGQ 514 (614)
T ss_pred -------cchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCcccccc----chhhccccc
Confidence 22333332 23333456666654221 1123345678899999998554433 246899999
Q ss_pred HHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 818 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 818 rqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
|+||..|+.++..|.+|+|||||+|||..+...+.+.|.+. .-+||+++||-.
T Consensus 515 r~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr 567 (614)
T KOG0927|consen 515 RRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR 567 (614)
T ss_pred chhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh
Confidence 99999999999999999999999999999999999988764 358999999843
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-29 Score=247.60 Aligned_cols=183 Identities=25% Similarity=0.345 Sum_probs=146.5
Q ss_pred CceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChh---cccceEEEEccCC--ccC
Q 000907 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQE---TFTRISGYCEQND--IHS 758 (1230)
Q Consensus 684 ~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~~~~~~~v~q~~--~~~ 758 (1230)
.++.+|+++|++|..|+++.|+|.||||||||+|+|+|...+ .+|+|.++|.+++.. .+...++-|+||+ ...
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~--t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKP--TSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCcccc--CCceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 456899999999999999999999999999999999998775 479999999987643 2334567789997 468
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHHH--cCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000907 759 PYVTVYESLLYSAWLRLSSEVNS---KTREMFVEEVMEL--VELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSI 833 (1230)
Q Consensus 759 ~~ltv~e~l~~~~~~~~~~~~~~---~~~~~~~~~~l~~--l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~i 833 (1230)
+.+|+.||+..+..-........ ..+.+...+-++. +|+++..++.+|. |||||||-+++++|.++.|+|
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~igl-----LSGGQRQalsL~MAtl~~pki 169 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKI 169 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhh-----ccchHHHHHHHHHHhcCCCcE
Confidence 99999999988653211111211 2233333444444 4567777777763 999999999999999999999
Q ss_pred eEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCC
Q 000907 834 IFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPS 873 (1230)
Q Consensus 834 lllDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~ 873 (1230)
|||||-|++|||.++..|++.=.+..+ .+.|.+++||.-.
T Consensus 170 LLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~ 210 (263)
T COG1101 170 LLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME 210 (263)
T ss_pred EEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH
Confidence 999999999999999999999888764 4789999999765
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-28 Score=256.49 Aligned_cols=174 Identities=26% Similarity=0.340 Sum_probs=141.7
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
-++.+|++..++.... ... .....+++||||++++||+++|+|.||||||||-|+|.|+.++ .+|+|.++|.++
T Consensus 4 ll~v~~l~k~f~~~~~---~~~-~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~p--t~G~i~f~g~~i 77 (268)
T COG4608 4 LLEVKNLKKYFPVGKG---FGK-KRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEP--TSGEILFEGKDI 77 (268)
T ss_pred eEEEeccEEEEecccc---cCc-ccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCC--CCceEEEcCcch
Confidence 4788899888865321 111 1135799999999999999999999999999999999998775 489999999874
Q ss_pred ChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHH
Q 000907 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGqr 818 (1230)
.... .++..+++.++++.+|+.. ..++. +++||||||
T Consensus 78 ~~~~-------------------------------------~~~~~~~v~elL~~Vgl~~~~~~ry-----PhelSGGQr 115 (268)
T COG4608 78 TKLS-------------------------------------KEERRERVLELLEKVGLPEEFLYRY-----PHELSGGQR 115 (268)
T ss_pred hhcc-------------------------------------hhHHHHHHHHHHHHhCCCHHHhhcC-----CcccCchhh
Confidence 3211 3345567899999999764 23332 568999999
Q ss_pred HHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 qrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||+.|||||+.+|+++++|||||.||...+.+++++|+++.++ |.|.++++||.+ .+...-|+
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdr 179 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDR 179 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhccc
Confidence 9999999999999999999999999999999999999999754 999999999987 34445565
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-29 Score=281.10 Aligned_cols=169 Identities=22% Similarity=0.390 Sum_probs=137.0
Q ss_pred ceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhccCCCchhhH
Q 000907 13 KASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDV 89 (1230)
Q Consensus 13 ~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 89 (1230)
..+|+|++||.++++.. .|+.+|||||+.+||. -||.+||.|+..-. -++.+.+.|++-
T Consensus 403 d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn~sa----s~eeV~e~~k~a------------- 464 (591)
T KOG0057|consen 403 DYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGNPSA----SDEEVVEACKRA------------- 464 (591)
T ss_pred ccCCcEEECCeeHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCCCCc----CHHHHHHHHHHc-------------
Confidence 46899999999997654 4789999999877665 59999999986421 123333333321
Q ss_pred HHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcccchHHHHHHH
Q 000907 90 FMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIV 169 (1230)
Q Consensus 90 ~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGLDs~sa~~I~ 169 (1230)
..+|.+.+ |+++++|.||++|.+ ||||||||||+|||++++|+|++||||||.||+.|+.+++
T Consensus 465 -------------~~hd~i~~---l~~GY~T~VGerG~~-LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~ 527 (591)
T KOG0057|consen 465 -------------GLHDVISR---LPDGYQTLVGERGLM-LSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREIL 527 (591)
T ss_pred -------------CcHHHHHh---ccccchhhHhhcccc-cccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHH
Confidence 13566655 999999999988765 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 170 NSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 170 ~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
+.+++. ..++|+|+ |.|.. +....||+|++|++|++.+.|+|+++..
T Consensus 528 ~~i~~~--~~~rTvI~-IvH~l-~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 528 DMIMDV--MSGRTVIM-IVHRL-DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HHHHHh--cCCCeEEE-EEecc-hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 999873 34666666 54554 4556679999999999999999999976
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-29 Score=272.78 Aligned_cols=195 Identities=25% Similarity=0.398 Sum_probs=159.4
Q ss_pred CCCceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEEC
Q 000907 656 FEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITIS 735 (1230)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~ 735 (1230)
..+..+.|+++++.+. +++++|+|+|+.+++|+.+|++||||+||||++++|...... .+|.|.+|
T Consensus 258 ~~~g~v~F~~V~F~y~------------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~--~sG~I~id 323 (497)
T COG5265 258 VRLGAVAFINVSFAYD------------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDV--NSGSITID 323 (497)
T ss_pred cccceEEEEEEEeecc------------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCC--cCceEEEc
Confidence 3455799999999885 356899999999999999999999999999999999987764 47999999
Q ss_pred CeecC---hhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHH-----HHHHHHHcCCCccccccccC
Q 000907 736 GYPKN---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMF-----VEEVMELVELNPLRQALVGL 807 (1230)
Q Consensus 736 g~~~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~l~l~~~~~~~~~~ 807 (1230)
|+++. ....++.+|.||||..++. -|...|+.|+. ...+.++..+. ..+.++ .+.+-.++.+|.
T Consensus 324 ~qdir~vtq~slR~aIg~VPQDtvLFN-Dti~yni~ygr-----~~at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vge 395 (497)
T COG5265 324 GQDIRDVTQQSLRRAIGIVPQDTVLFN-DTIAYNIKYGR-----PDATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGE 395 (497)
T ss_pred chhHHHhHHHHHHHHhCcCcccceehh-hhHHHHHhccC-----ccccHHHHHHHHHHhhhhHHHH--hCchhhhcccch
Confidence 99864 3567889999999998875 48888888752 12233322211 112222 245566888887
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCH
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSI 874 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~ 874 (1230)
.+. .|||||||||+|||+++++|+||+|||.||+||..+.+.++..|++.+ .|+|.+++.|..|.
T Consensus 396 rgl-klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst 460 (497)
T COG5265 396 RGL-KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST 460 (497)
T ss_pred hee-eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh
Confidence 655 399999999999999999999999999999999999999999999886 69999999999883
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-28 Score=255.20 Aligned_cols=186 Identities=25% Similarity=0.331 Sum_probs=153.9
Q ss_pred eeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC--hhcccceEEEEc-cCCccCCCCC
Q 000907 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN--QETFTRISGYCE-QNDIHSPYVT 762 (1230)
Q Consensus 686 ~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~--~~~~~~~~~~v~-q~~~~~~~lt 762 (1230)
..+++|+||+|++|++++++|||||||||+||+|+|...| .+|.|.++|...- .+.+-+.+++|+ |-..+.-.+.
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p--~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLP--TSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcccc--CCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 3589999999999999999999999999999999998775 4799999998642 234445666665 4445555566
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCC
Q 000907 763 VYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 842 (1230)
Q Consensus 763 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsg 842 (1230)
+.|.+.....+. +.+.++-.++.+.+.+.|++++..+.. ++.||-|||.|+.||.+|+++|+||||||||-|
T Consensus 115 ~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~-----vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 ALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWP-----VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhh-----hhhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 777776543332 455566677889999999998877765 467999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 843 LDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 843 LD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||..++..+.+.|++..+ .+.||+.+||+-+ +|-.+.|+
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~r 226 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDR 226 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhh
Confidence 999999999999999864 5999999999987 67778887
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.5e-28 Score=260.16 Aligned_cols=209 Identities=22% Similarity=0.295 Sum_probs=169.5
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eEEEEEEECC
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG---YITGNITISG 736 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 736 (1230)
-++.+|++..+... .+...++++|||++++||.+||+|.||||||-..+.+.|+.+.. ..+|+|.++|
T Consensus 6 lL~v~nLsV~f~~~---------~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G 76 (534)
T COG4172 6 LLSIRNLSVAFHQE---------GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDG 76 (534)
T ss_pred ceeeeccEEEEecC---------CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcC
Confidence 47888998877532 35678999999999999999999999999999999999876532 3469999999
Q ss_pred eecC---hhcc----cceEEEEccCCc--cCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 000907 737 YPKN---QETF----TRISGYCEQNDI--HSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGL 807 (1230)
Q Consensus 737 ~~~~---~~~~----~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 807 (1230)
.+.- +... -..+++++|++. +.|..|+...+.-... .....+.+..++++.++++..|+.+....+-..
T Consensus 77 ~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~--~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~y 154 (534)
T COG4172 77 EDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLR--LHRGLSRAAARARALELLELVGIPEPEKRLDAY 154 (534)
T ss_pred hhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHH--HHhcccHHHHHHHHHHHHHHcCCCchhhhhhhC
Confidence 8742 2222 247899999984 6677788777755443 334567777788899999999998876665444
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhc
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+++|||||||||.||+||+.+|++|+.||||++||...+.+|+++|+++.++ |..++++|||.+. +-..-|+
T Consensus 155 --PHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~i-Vr~~ADr 227 (534)
T COG4172 155 --PHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGI-VRKFADR 227 (534)
T ss_pred --CcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHH-HHHhhhh
Confidence 5689999999999999999999999999999999999999999999999754 9999999999872 3344465
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-28 Score=271.44 Aligned_cols=176 Identities=26% Similarity=0.383 Sum_probs=152.6
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcc-cceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~-~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
||+|||... ..+|+|.++|.++++... +|.+|+|.|+..|+|++||+|||.|+.++++.. +
T Consensus 46 Lr~IAGLe~---~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~----------k----- 107 (338)
T COG3839 46 LRMIAGLEE---PTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVP----------K----- 107 (338)
T ss_pred HHHHhCCCC---CCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCc----------h-----
Confidence 678899865 458999999999998654 589999999999999999999999998876421 1
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
++.+++|+++.+.|+|+|-.|.+. ++|||||||||++||||+++|++++||||+|.
T Consensus 108 -------------------~ei~~rV~eva~~L~l~~lL~r~P-----~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSn 163 (338)
T COG3839 108 -------------------AEIDKRVKEVAKLLGLEHLLNRKP-----LQLSGGQRQRVALARALVRKPKVFLLDEPLSN 163 (338)
T ss_pred -------------------HHHHHHHHHHHHHcCChhHHhcCc-----ccCChhhHHHHHHHHHHhcCCCEEEecCchhH
Confidence 122346888999999999999654 57999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||+..+.++...++++.+..+.|+| -++|...|+..++|||++|++|++...|++.++-
T Consensus 164 LDa~lR~~mr~ei~~lh~~l~~T~I-YVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely 222 (338)
T COG3839 164 LDAKLRVLMRSEIKKLHERLGTTTI-YVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELY 222 (338)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCcEE-EEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHh
Confidence 9999999999999998876655544 5678889999999999999999999999999983
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-28 Score=300.42 Aligned_cols=178 Identities=26% Similarity=0.369 Sum_probs=140.4
Q ss_pred ccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 2 LALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 2 ~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
|.|+|... ..+|+|++||.|+++.. .|+.+|||+||+.+|. .||+|||.++..-
T Consensus 517 KLL~gly~---p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~p~------------------- 573 (709)
T COG2274 517 KLLLGLYK---PQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGNPE------------------- 573 (709)
T ss_pred HHHhcCCC---CCCceEEECCEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCCCC-------------------
Confidence 55666654 45899999999998765 4799999999888665 6999999986531
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
.+.++.+++.. ....+|+|.+ ||.++||.||+.| .+||||||||++|||||+++|+||+||||||
T Consensus 574 ------~~~e~i~~A~~-----~ag~~~fI~~---lP~gy~t~v~E~G-~~LSGGQrQrlalARaLl~~P~ILlLDEaTS 638 (709)
T COG2274 574 ------ATDEEIIEAAQ-----LAGAHEFIEN---LPMGYDTPVGEGG-ANLSGGQRQRLALARALLSKPKILLLDEATS 638 (709)
T ss_pred ------CCHHHHHHHHH-----HhCcHHHHHh---cccccccccccCC-CCCCHHHHHHHHHHHHhccCCCEEEEeCccc
Confidence 11111122211 1124667666 9999999999766 4799999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHHH
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQF 221 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~~ 221 (1230)
+||+.|+..|.+.|+++.. ++|+|+..|+ . .....+|+|+||++|+++++|||+++.+.
T Consensus 639 aLD~~sE~~I~~~L~~~~~--~~T~I~IaHR-l-~ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 639 ALDPETEAIILQNLLQILQ--GRTVIIIAHR-L-STIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred ccCHhHHHHHHHHHHHHhc--CCeEEEEEcc-c-hHhhhccEEEEccCCceeccCCHHHHHHh
Confidence 9999999999999998763 5776665444 3 45566799999999999999999999763
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-28 Score=241.67 Aligned_cols=176 Identities=27% Similarity=0.349 Sum_probs=149.4
Q ss_pred CccccCCcCCCCceeEEEEECCccCCC--CcccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHE--FVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~--~~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
|++|++.+. -.+|+|++||.+... ...++.+|..+.+..++..||+||||.|.+++.+.. +
T Consensus 45 LRmiatlL~---P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~----------~---- 107 (245)
T COG4555 45 LRMIATLLI---PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLS----------R---- 107 (245)
T ss_pred HHHHHHhcc---CCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhh----------h----
Confidence 355666554 358999999999753 345789999998889999999999999999876421 1
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
.+.+++++.+.+.|+|.+|.|+.+| ++|-|+||||+|||||+.+|+|++||||||
T Consensus 108 --------------------~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~s 162 (245)
T COG4555 108 --------------------KEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTS 162 (245)
T ss_pred --------------------hHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCC
Confidence 1234568889999999999999998 499999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|||-.+...+.+.++++.. .|+.++. -.|-++|+..+||++++|++|++++.|+.+++..
T Consensus 163 GLDi~~~r~~~dfi~q~k~-egr~viF-SSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 163 GLDIRTRRKFHDFIKQLKN-EGRAVIF-SSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred CccHHHHHHHHHHHHHhhc-CCcEEEE-ecccHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 9999999999999998764 4565555 4577999999999999999999999999988754
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-28 Score=255.10 Aligned_cols=177 Identities=24% Similarity=0.389 Sum_probs=149.1
Q ss_pred CccccCCcCCCCceeEEEEECCc---cCCCCcc-cceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGH---DMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRRE 76 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~---~~~~~~~-~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e 76 (1230)
|++|||... -.+|.|.+||. |.+.... .|.+|||.|+-.+|+.|||.|||.|+.+++. . ++.
T Consensus 45 LRiIAGLe~---p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~--~---~p~------ 110 (345)
T COG1118 45 LRIIAGLET---PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRK--E---RPS------ 110 (345)
T ss_pred HHHHhCcCC---CCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccc--c---CCC------
Confidence 578888865 45799999999 5554222 3899999999999999999999999987651 1 111
Q ss_pred HhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCC
Q 000907 77 KAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEI 156 (1230)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEP 156 (1230)
..+.+..++++|+.+.|++.++ ....+|||||||||++||||+..|++|+||||
T Consensus 111 ---------------------~~~~r~rv~elL~lvqL~~la~-----ryP~QLSGGQrQRVALARALA~eP~vLLLDEP 164 (345)
T COG1118 111 ---------------------EAEIRARVEELLRLVQLEGLAD-----RYPAQLSGGQRQRVALARALAVEPKVLLLDEP 164 (345)
T ss_pred ---------------------hhhHHHHHHHHHHHhcccchhh-----cCchhcChHHHHHHHHHHHhhcCCCeEeecCC
Confidence 1122345788999999988776 66788999999999999999999999999999
Q ss_pred CcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhH
Q 000907 157 STGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218 (1230)
Q Consensus 157 TSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l 218 (1230)
.++||++.+.++-+.|+++.+..|.|++. ++|...|+++++|||++|++|+|...||++++
T Consensus 165 f~ALDa~vr~~lr~wLr~~~~~~~~ttvf-VTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 165 FGALDAKVRKELRRWLRKLHDRLGVTTVF-VTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred chhhhHHHHHHHHHHHHHHHHhhCceEEE-EeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 99999999999999999988766666655 67888999999999999999999999999998
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-27 Score=242.41 Aligned_cols=135 Identities=37% Similarity=0.587 Sum_probs=118.0
Q ss_pred eeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh---hcccceEEEEccCCccCCCCC
Q 000907 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETFTRISGYCEQNDIHSPYVT 762 (1230)
Q Consensus 686 ~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lt 762 (1230)
+.+++++|+++++||+++|+|+||||||||+++|+|..++ ..|+|.++|.+... ...++.++|++|
T Consensus 12 ~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~--~~G~i~~~~~~~~~~~~~~~~~~i~~~~q--------- 80 (157)
T cd00267 12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP--TSGEILIDGKDIAKLPLEELRRRIGYVPQ--------- 80 (157)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEcccCCHHHHHhceEEEee---------
Confidence 4699999999999999999999999999999999998765 47999999986542 234567888887
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCC
Q 000907 763 VYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 842 (1230)
Q Consensus 763 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsg 842 (1230)
||+|||||++||++++.+|++++|||||+|
T Consensus 81 --------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~ 110 (157)
T cd00267 81 --------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSG 110 (157)
T ss_pred --------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 843 LDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 843 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||..++..+.+.++++.++++|+++++|++.. +-...|+
T Consensus 111 lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~-~~~~~d~ 149 (157)
T cd00267 111 LDPASRERLLELLRELAEEGRTVIIVTHDPEL-AELAADR 149 (157)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCE
Confidence 99999999999999987668999999999763 3333454
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9e-28 Score=246.16 Aligned_cols=178 Identities=22% Similarity=0.344 Sum_probs=145.7
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc------ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSR 74 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~------~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~ 74 (1230)
||.+.|.+.+ .+|+|.++|+++.... .++.+|++.|+-.||.+|||.||+.|-.+-. .+.++
T Consensus 51 Lr~I~Gll~P---~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~---------~~lp~ 118 (263)
T COG1127 51 LRLILGLLRP---DKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH---------TKLPE 118 (263)
T ss_pred HHHHhccCCC---CCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhh---------ccCCH
Confidence 4667777763 4899999999986432 3578999999999999999999999843311 11111
Q ss_pred HHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCccc-ccccccCCccccCcccccchhHHHHHHhcCCceeee
Q 000907 75 REKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVC-ADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFM 153 (1230)
Q Consensus 75 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~-~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlL 153 (1230)
. ..++.+..-|+..||+.. +| .+...||||+|||+++||||+.+|+|+|+
T Consensus 119 ~------------------------~i~~lv~~KL~~VGL~~~~~~-----~~PsELSGGM~KRvaLARAialdPell~~ 169 (263)
T COG1127 119 S------------------------LIRELVLMKLELVGLRGAAAD-----LYPSELSGGMRKRVALARAIALDPELLFL 169 (263)
T ss_pred H------------------------HHHHHHHHHHHhcCCChhhhh-----hCchhhcchHHHHHHHHHHHhcCCCEEEe
Confidence 1 122356667889999765 44 56678999999999999999999999999
Q ss_pred eCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 154 DEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 154 DEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
||||||||+.++..+-+.++++.+..+-|++ .++|..++++..+|++++|.+|+|+.+||++++.+
T Consensus 170 DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i-~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 170 DEPTSGLDPISAGVIDELIRELNDALGLTVI-MVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred cCCCCCCCcchHHHHHHHHHHHHHhhCCEEE-EEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999999999987766555 57788999999999999999999999999999854
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-27 Score=291.96 Aligned_cols=180 Identities=25% Similarity=0.250 Sum_probs=144.6
Q ss_pred ccCCc-eeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEE-----------ECCeecChh-----c
Q 000907 681 VHDDK-LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNIT-----------ISGYPKNQE-----T 743 (1230)
Q Consensus 681 ~~~~~-~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~~-----~ 743 (1230)
.+++. ..+|++++ .+++||++||+||||||||||||+|+|..++. .|+|. ++|.++... .
T Consensus 81 ~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~--~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~ 157 (590)
T PRK13409 81 HRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN--LGDYEEEPSWDEVLKRFRGTELQNYFKKLYN 157 (590)
T ss_pred EEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC--CccccCCCcHHHHHHHhCChHHHHHHHHHhc
Confidence 34444 36999999 99999999999999999999999999987653 69997 888765321 1
Q ss_pred ccceEEEEccCCccCCC---CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHH
Q 000907 744 FTRISGYCEQNDIHSPY---VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKR 820 (1230)
Q Consensus 744 ~~~~~~~v~q~~~~~~~---ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr 820 (1230)
.+..+++.+|.....|. .||+|++... ...+.++++++.+++.+..|+.+ ..||||||||
T Consensus 158 ~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qr 220 (590)
T PRK13409 158 GEIKVVHKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDI-----SELSGGELQR 220 (590)
T ss_pred cCcceeecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHH
Confidence 12235666664433332 3999988631 12345789999999988777765 4699999999
Q ss_pred HHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 821 LTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 821 l~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
++||++|+.+|++|+|||||++||+.++..+.+.|+++++ |+|||+++|++. .+....|+
T Consensus 221 v~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~ 280 (590)
T PRK13409 221 VAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADN 280 (590)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCE
Confidence 9999999999999999999999999999999999999987 999999999987 45566676
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-27 Score=291.93 Aligned_cols=189 Identities=20% Similarity=0.261 Sum_probs=142.3
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++++ +++.+|+||||+|++||++||+||||||||||||+|+|..++ .+|+|.++|..
T Consensus 2 i~i~nls~~~-------------g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~p--d~G~I~~~~~~-- 64 (638)
T PRK10636 2 IVFSSLQIRR-------------GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISA--DGGSYTFPGNW-- 64 (638)
T ss_pred EEEEEEEEEe-------------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCCC--
Confidence 5678888776 345799999999999999999999999999999999998665 37999998742
Q ss_pred hhcccceEEEEccCCccCCCCCHHHHHHHHH--------H---------------hcC-CCCCCHHHHHHHHHHHHHHcC
Q 000907 741 QETFTRISGYCEQNDIHSPYVTVYESLLYSA--------W---------------LRL-SSEVNSKTREMFVEEVMELVE 796 (1230)
Q Consensus 741 ~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~--------~---------------~~~-~~~~~~~~~~~~~~~~l~~l~ 796 (1230)
.++|++|+.... ..|+.+.+.-.. . +.. .........+.+++++++.+|
T Consensus 65 ------~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lg 137 (638)
T PRK10636 65 ------QLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLG 137 (638)
T ss_pred ------EEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Confidence 378888864332 245544432110 0 000 000000122356788999999
Q ss_pred CC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHH
Q 000907 797 LN-PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSID 875 (1230)
Q Consensus 797 l~-~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~ 875 (1230)
+. +..+..+ ..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|++. +.|||++|||+. .
T Consensus 138 l~~~~~~~~~-----~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~ 208 (638)
T PRK10636 138 FSNEQLERPV-----SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-F 208 (638)
T ss_pred CCchhhcCch-----hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-H
Confidence 96 4556554 469999999999999999999999999999999999999999998765 569999999976 3
Q ss_pred HHHHHhc
Q 000907 876 IFEAFDA 882 (1230)
Q Consensus 876 i~~~fd~ 882 (1230)
+-...|+
T Consensus 209 l~~~~d~ 215 (638)
T PRK10636 209 LDPIVDK 215 (638)
T ss_pred HHHhcCE
Confidence 4445565
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-27 Score=318.83 Aligned_cols=187 Identities=23% Similarity=0.333 Sum_probs=150.1
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++.. +++.+|+|+|+++++||+++|+||||||||||+++|.|..++ .+|++.
T Consensus 614 ~I~~~~vsF~y~~~----------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~--~~G~i~------ 675 (1495)
T PLN03232 614 AISIKNGYFSWDSK----------TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH--AETSSV------ 675 (1495)
T ss_pred cEEEEeeEEEcCCC----------CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcc--cCCCEE------
Confidence 58999999988521 234699999999999999999999999999999999998764 345442
Q ss_pred ChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCCCC
Q 000907 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-------PLRQALVGLPGVNG 812 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~~~~~ 812 (1230)
..++.++||+|++.++. .|++||+.|+. ..+ +++.+++++..++. +-.+|.+|+.+. +
T Consensus 676 ---~~~~~Iayv~Q~p~Lf~-gTIreNI~fg~------~~~----~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~-~ 740 (1495)
T PLN03232 676 ---VIRGSVAYVPQVSWIFN-ATVRENILFGS------DFE----SERYWRAIDVTALQHDLDLLPGRDLTEIGERGV-N 740 (1495)
T ss_pred ---EecCcEEEEcCcccccc-ccHHHHhhcCC------ccC----HHHHHHHHHHhCCHHHHHhCCCCCCceecCCCc-c
Confidence 24567999999999886 59999999862 112 23456667666653 334677887654 6
Q ss_pred CCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRT-VRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 813 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~-l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||||++||||++++|+|++||||||+||+++++.+++. ++.. .+|+|+|++||+++ ....+|+
T Consensus 741 LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~ 808 (1495)
T PLN03232 741 ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDR 808 (1495)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCE
Confidence 999999999999999999999999999999999999988764 5543 36899999999986 3566787
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-27 Score=316.27 Aligned_cols=186 Identities=22% Similarity=0.348 Sum_probs=152.0
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEE-EEEEECCee
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT-GNITISGYP 738 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~-G~i~~~g~~ 738 (1230)
.++++|+++.++.. +++.+|+|+|+++++||+++|+||||||||||+++|.|..++ .+ |+|.+
T Consensus 614 ~I~~~nvsf~y~~~----------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~--~~GG~I~l---- 677 (1622)
T PLN03130 614 AISIKNGYFSWDSK----------AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPP--RSDASVVI---- 677 (1622)
T ss_pred ceEEEeeEEEccCC----------CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhcc--CCCceEEE----
Confidence 58999999988521 234699999999999999999999999999999999998764 46 78875
Q ss_pred cChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCCCC
Q 000907 739 KNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLPGVN 811 (1230)
Q Consensus 739 ~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~~~ 811 (1230)
++.++||+|++.++. .|++||+.|+. .. .+++.+++++..+|.+ -.+|.+|..+ .
T Consensus 678 ------~~~Iayv~Q~p~Lfn-gTIreNI~fg~------~~----d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G-~ 739 (1622)
T PLN03130 678 ------RGTVAYVPQVSWIFN-ATVRDNILFGS------PF----DPERYERAIDVTALQHDLDLLPGGDLTEIGERG-V 739 (1622)
T ss_pred ------cCeEEEEcCccccCC-CCHHHHHhCCC------cc----cHHHHHHHHHHhCcHHHHHhCCCcccccccCCC-C
Confidence 346899999998886 69999999862 11 1344677777776643 3467777754 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMR-TVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~-~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
.||||||||++||||++++|+|++||||||+||+++++.+.+ .++... +|+|+|++||+++ ....+|+
T Consensus 740 ~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~ 808 (1622)
T PLN03130 740 NISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDR 808 (1622)
T ss_pred CCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCE
Confidence 699999999999999999999999999999999999998865 566543 6899999999985 4567787
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-27 Score=242.95 Aligned_cols=185 Identities=23% Similarity=0.308 Sum_probs=150.7
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc------ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhh-hh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVE-LS 73 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~------~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~-~~ 73 (1230)
|++|.|... ..+|+|.+||.++.... +|+.+||+.|+..|.+.+||.||+..+..-. . ++++..-. .+
T Consensus 47 LR~lngl~d---~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~-~-s~~~slfglfs 121 (258)
T COG3638 47 LRSLNGLVD---PTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGY-T-STWRSLFGLFS 121 (258)
T ss_pred HHHHhcccC---CCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhccc-c-hHHHHHhCCCC
Confidence 466777654 45899999998876543 3578999999999999999999999875321 1 11111110 11
Q ss_pred HHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeee
Q 000907 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFM 153 (1230)
Q Consensus 74 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlL 153 (1230)
+++ ++..-..|+.+|+.+.+-++.+ .|||||+|||+|||||+++|+|++-
T Consensus 122 k~d-------------------------k~~Al~aLervgi~~~A~qra~-----~LSGGQQQRVaIARaL~Q~pkiILA 171 (258)
T COG3638 122 KED-------------------------KAQALDALERVGILDKAYQRAS-----TLSGGQQQRVAIARALVQQPKIILA 171 (258)
T ss_pred HHH-------------------------HHHHHHHHHHcCcHHHHHHHhc-----cCCcchhHHHHHHHHHhcCCCEEec
Confidence 221 2234457899999999998886 4999999999999999999999999
Q ss_pred eCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHHH
Q 000907 154 DEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQF 221 (1230)
Q Consensus 154 DEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~~ 221 (1230)
|||+++||+.++.+||+.|+++++..|.|+|+++|| .+-+.+.||||+-|++|+++|.||.+++.+.
T Consensus 172 DEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~-vdlA~~Y~~Riigl~~G~ivfDg~~~el~~~ 238 (258)
T COG3638 172 DEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ-VDLAKKYADRIIGLKAGRIVFDGPASELTDE 238 (258)
T ss_pred CCcccccChhhHHHHHHHHHHHHHHcCCEEEEEech-HHHHHHHHhhheEecCCcEEEeCChhhhhHH
Confidence 999999999999999999999999888898888876 6788999999999999999999999987654
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-27 Score=248.63 Aligned_cols=162 Identities=23% Similarity=0.321 Sum_probs=137.3
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhc
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAK 80 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~ 80 (1230)
||+|||... -.+|+|.++|.+++. ....+|||.|++.|+|.+||+||+.|+.+.++.. +
T Consensus 46 LriiAGL~~---p~~G~V~~~g~~v~~--p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~----------~------ 104 (248)
T COG1116 46 LRLIAGLEK---PTSGEVLLDGRPVTG--PGPDIGYVFQEDALLPWLTVLDNVALGLELRGKS----------K------ 104 (248)
T ss_pred HHHHhCCCC---CCCceEEECCcccCC--CCCCEEEEeccCcccchhhHHhhheehhhccccc----------h------
Confidence 578888876 347999999999843 3567999999999999999999999998765311 0
Q ss_pred cCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCccc
Q 000907 81 IIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGL 160 (1230)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGL 160 (1230)
++.+++++..|+..||.+..| ...+.|||||||||+|||||+.+|+||+||||.++|
T Consensus 105 ------------------~e~~~~a~~~L~~VgL~~~~~-----~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgAL 161 (248)
T COG1116 105 ------------------AEARERAKELLELVGLAGFED-----KYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGAL 161 (248)
T ss_pred ------------------HhHHHHHHHHHHHcCCcchhh-----cCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchh
Confidence 112235788999999999988 455789999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCC
Q 000907 161 DSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDG 207 (1230)
Q Consensus 161 Ds~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G 207 (1230)
|+.|+.++++.|.++.+..+. |++.++|.-+|+..++|||++|+++
T Consensus 162 DalTR~~lq~~l~~lw~~~~~-TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 162 DALTREELQDELLRLWEETRK-TVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred hHHHHHHHHHHHHHHHHhhCC-EEEEEeCCHHHHHhhhCEEEEecCC
Confidence 999999999999999876555 5556788899999999999999984
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-27 Score=236.46 Aligned_cols=134 Identities=35% Similarity=0.546 Sum_probs=118.8
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh---hcccceEEEEccCCccCCCCCHHH
Q 000907 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETFTRISGYCEQNDIHSPYVTVYE 765 (1230)
Q Consensus 689 L~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e 765 (1230)
|+|||+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+||+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~--~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP--DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHE--SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999999999999999999999998764 48999999998764 456778999999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCC
Q 000907 766 SLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 841 (1230)
Q Consensus 766 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPts 841 (1230)
+ ..++.++++++.+++.+..++.++... ..||+|||||++||+||+.+|++++|||||+
T Consensus 79 ~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N----------------ESDERIEEVLKKLGLEDLLDRKIGQRA-SSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H----------------HHHHHHHHHHHHTTHGGGTGSBGTSCG-GGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c----------------ccccccccccccccccccccccccccc-chhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9 223457899999999988887775543 6799999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-27 Score=266.47 Aligned_cols=190 Identities=25% Similarity=0.377 Sum_probs=159.4
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcc-cceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~-~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
|++|||... -.+|+|.+||++++..-. +|.+|+|.|+-.|||+|||+||+.|+.+++....
T Consensus 48 LR~IAGfe~---p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~--------------- 109 (352)
T COG3842 48 LRMIAGFEQ---PSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLK--------------- 109 (352)
T ss_pred HHHHhCCCC---CCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCC---------------
Confidence 578888865 458999999999987543 6899999999999999999999999987442110
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
.++.+++|++.|+.++|++-++- ....|||||||||++||||+.+|++|+||||.|+
T Consensus 110 ------------------~~~i~~rv~e~L~lV~L~~~~~R-----~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSa 166 (352)
T COG3842 110 ------------------KAEIKARVEEALELVGLEGFADR-----KPHQLSGGQQQRVALARALVPEPKVLLLDEPLSA 166 (352)
T ss_pred ------------------HHHHHHHHHHHHHHcCchhhhhh-----ChhhhChHHHHHHHHHHHhhcCcchhhhcCcccc
Confidence 01123468999999999997774 4457999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCCchhhh
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFL 239 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~~f~~~G~~~p~~~n~ad~l 239 (1230)
||..-+.++..-|+++.+..|.|+|. ++|...|.+.+.|||+||++|++...|+++++ |..|...-.|||+
T Consensus 167 LD~kLR~~mr~Elk~lq~~~giT~i~-VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~ei--------Y~~P~~~fVA~Fi 237 (352)
T COG3842 167 LDAKLREQMRKELKELQRELGITFVY-VTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI--------YERPATRFVADFI 237 (352)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCeEEE-EECCHHHHhhhccceEEccCCceeecCCHHHH--------hhCcchHHHHHHh
Confidence 99999999999999999877665554 66788999999999999999999999999998 4456666667765
Q ss_pred h
Q 000907 240 Q 240 (1230)
Q Consensus 240 ~ 240 (1230)
-
T Consensus 238 G 238 (352)
T COG3842 238 G 238 (352)
T ss_pred C
Confidence 4
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-26 Score=236.73 Aligned_cols=203 Identities=21% Similarity=0.290 Sum_probs=167.2
Q ss_pred eeEEeeeEEEEecCcc--------ccccc---ccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeE
Q 000907 660 SLTFDEITYSVDMPQE--------MKRRG---VHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYI 728 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~--------~~~~~---~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~ 728 (1230)
.+.++||+..+..... +++.. .......+|+||||++++||.+||+|+||||||||||+|+|..+|.
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt-- 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT-- 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC--
Confidence 4677778776665421 11111 1345678999999999999999999999999999999999988764
Q ss_pred EEEEEECCeecChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000907 729 TGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLP 808 (1230)
Q Consensus 729 ~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 808 (1230)
+|+|.++|.-... ..=.-.+.|.+|.+||+.+-+.+. ..+.++.++.++++++-.+|.+..|..+
T Consensus 81 ~G~v~v~G~v~~l---------i~lg~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pv--- 145 (249)
T COG1134 81 SGKVKVTGKVAPL---------IELGAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPV--- 145 (249)
T ss_pred CceEEEcceEehh---------hhcccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCch---
Confidence 8999999964211 111223557899999999876653 4567788889999999999999988875
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+.+|.||+-||+.|.|.-.+|+||++||-.+--|+.-++.-.+.++++.++++|+|+++|+++ .|-+..|+
T Consensus 146 --ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~ 216 (249)
T COG1134 146 --KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDR 216 (249)
T ss_pred --hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCe
Confidence 579999999999999999999999999999999999999999999999888899999999987 67777787
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-27 Score=225.27 Aligned_cols=199 Identities=24% Similarity=0.317 Sum_probs=154.6
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee-
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP- 738 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~- 738 (1230)
.+..+|++.++.+... ..-...+|+|+||+++.|||+++=|||||||||||++|-|.+.++ +|+|.+.-..
T Consensus 4 ~l~v~~~~KtFtlH~q------~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d--~G~I~v~H~g~ 75 (235)
T COG4778 4 PLNVSNVSKTFTLHQQ------GGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD--EGQILVRHEGE 75 (235)
T ss_pred eeeeecchhheEeeec------CCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC--CceEEEEeCcc
Confidence 4667777766654321 011346999999999999999999999999999999999987654 7888875432
Q ss_pred -cC-----h----hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 000907 739 -KN-----Q----ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLP 808 (1230)
Q Consensus 739 -~~-----~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 808 (1230)
++ . .-.++.+|||.|.-...|.....|-+.-...-+ ....+....++.+++..+.+.+..=.+ +
T Consensus 76 ~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~---gv~~~~a~~~a~~Ll~rLnlperLW~L---a 149 (235)
T COG4778 76 WVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR---GVPREVARAKAADLLTRLNLPERLWSL---A 149 (235)
T ss_pred hhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCCHHHhcC---C
Confidence 11 1 234567899999988888776666554443222 345566667788999999986543222 1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000907 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 809 ~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 873 (1230)
+..+||||+|||.|||.++.|-+||+|||||++||..+++.++++|++.+..|..+|=+-||-.
T Consensus 150 -PaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDee 213 (235)
T COG4778 150 -PATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEE 213 (235)
T ss_pred -CcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHH
Confidence 4579999999999999999999999999999999999999999999998888999999999853
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-28 Score=266.45 Aligned_cols=169 Identities=25% Similarity=0.429 Sum_probs=140.7
Q ss_pred ceeEEEEECCccCCCC---cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhccCCCchhhH
Q 000907 13 KASGKVTYNGHDMHEF---VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDV 89 (1230)
Q Consensus 13 ~~~G~V~vnG~~~~~~---~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 89 (1230)
..+|+|++||.|++.. ..|+.+|.||||.++|.+ |+..||+|+..-. +.+|
T Consensus 590 v~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak~~A------------snee------------- 643 (790)
T KOG0056|consen 590 VNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAKPSA------------SNEE------------- 643 (790)
T ss_pred ccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecCCCC------------ChHH-------------
Confidence 4589999999998753 346899999998887765 9999999974211 1111
Q ss_pred HHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcccchHHHHHHH
Q 000907 90 FMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIV 169 (1230)
Q Consensus 90 ~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGLDs~sa~~I~ 169 (1230)
..+++++..++|.|+ +.+++++|+||++|.| |||||||||+|||++++.|.|++|||+||+||..++++|+
T Consensus 644 -----vyaAAkAA~IHdrIl---~fPegY~t~VGERGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQ 714 (790)
T KOG0056|consen 644 -----VYAAAKAAQIHDRIL---QFPEGYNTRVGERGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQ 714 (790)
T ss_pred -----HHHHHHHhhHHHHHh---cCchhhhhhhhhcccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHH
Confidence 112334455677665 5999999999999987 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 170 NSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 170 ~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
.+|.+++. ++|+|+ +.|..+++.+. |.|+++++|++++.|.|+|++.
T Consensus 715 aaL~rlca--~RTtIV-vAHRLSTivnA-D~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 715 AALARLCA--NRTTIV-VAHRLSTIVNA-DLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred HHHHHHhc--CCceEE-Eeeeehheecc-cEEEEEeCCeEeecCcHHHHHh
Confidence 99999884 677665 66778888886 9999999999999999999975
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-27 Score=261.60 Aligned_cols=169 Identities=25% Similarity=0.449 Sum_probs=140.3
Q ss_pred ceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhccCCCchhhH
Q 000907 13 KASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDV 89 (1230)
Q Consensus 13 ~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 89 (1230)
..+|.|+++|.++.+.. .|+.+|.|||+-+||.+ |+..|+.|+.. .++.+|..
T Consensus 315 ~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFND-ti~yni~ygr~------------~at~eev~----------- 370 (497)
T COG5265 315 VNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND-TIAYNIKYGRP------------DATAEEVG----------- 370 (497)
T ss_pred CcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhh-hHHHHHhccCc------------cccHHHHH-----------
Confidence 34799999999987543 46899999998887765 99999999753 12222221
Q ss_pred HHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcccchHHHHHHH
Q 000907 90 FMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIV 169 (1230)
Q Consensus 90 ~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGLDs~sa~~I~ 169 (1230)
++.++.++.++|.. ||+++||.||+.|.+ |||||||||+|||+++++|+||+|||+||+||++|+.+|+
T Consensus 371 -------aaa~~aqi~~fi~~---lP~gy~t~Vgerglk-lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq 439 (497)
T COG5265 371 -------AAAEAAQIHDFIQS---LPEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQ 439 (497)
T ss_pred -------HHHHHhhhhHHHHh---Cchhhhcccchheee-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHH
Confidence 11223345666665 999999999998886 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 170 NSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 170 ~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
.+|+++++ ++|+++ |.|..+++.+. |.|+||++|++++.|+|+++++
T Consensus 440 ~~l~~~~~--~rttlv-iahrlsti~~a-deiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 440 AALREVSA--GRTTLV-IAHRLSTIIDA-DEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred HHHHHHhC--CCeEEE-EeehhhhccCC-ceEEEeeCCEEEecCcHHHHHH
Confidence 99999873 666665 77888888886 9999999999999999999976
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-26 Score=286.08 Aligned_cols=187 Identities=24% Similarity=0.287 Sum_probs=140.9
Q ss_pred eEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecC
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++++. ++.+|+||||++++||++||+|||||||||||++|+|..++ .+|+|.++|..
T Consensus 4 l~i~~ls~~~~-------------~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p--~~G~I~~~~~~-- 66 (635)
T PRK11147 4 ISIHGAWLSFS-------------DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLL--DDGRIIYEQDL-- 66 (635)
T ss_pred EEEeeEEEEeC-------------CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCeEEEeCCCC--
Confidence 77888888763 35699999999999999999999999999999999998765 37999998631
Q ss_pred hhcccceEEEEccCCccCCCCCHHHHHHHH------------------------------HHhc--CCCCCCHHHHHHHH
Q 000907 741 QETFTRISGYCEQNDIHSPYVTVYESLLYS------------------------------AWLR--LSSEVNSKTREMFV 788 (1230)
Q Consensus 741 ~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~------------------------------~~~~--~~~~~~~~~~~~~~ 788 (1230)
.++|++|.+......++.+++..+ ..+. .. .........++
T Consensus 67 ------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~ 139 (635)
T PRK11147 67 ------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLD-HHNLWQLENRI 139 (635)
T ss_pred ------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH-hcCcccHHHHH
Confidence 256777765433334565543211 0000 00 00001123467
Q ss_pred HHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q 000907 789 EEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCT 868 (1230)
Q Consensus 789 ~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~ 868 (1230)
+++++.+|+.. ++. +..|||||||||+||++|+.+|+||||||||+|||+.+...+.+.|+++ +.|||++
T Consensus 140 ~~~l~~lgl~~--~~~-----~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvliv 209 (635)
T PRK11147 140 NEVLAQLGLDP--DAA-----LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFI 209 (635)
T ss_pred HHHHHhCCCCC--CCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEE
Confidence 88999999863 433 3579999999999999999999999999999999999999999999876 3599999
Q ss_pred ecCCCHHHHHHHhc
Q 000907 869 IHQPSIDIFEAFDA 882 (1230)
Q Consensus 869 ~H~~~~~i~~~fd~ 882 (1230)
||++. .+.+..|+
T Consensus 210 sHd~~-~l~~~~d~ 222 (635)
T PRK11147 210 SHDRS-FIRNMATR 222 (635)
T ss_pred eCCHH-HHHHhcCe
Confidence 99976 34455566
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-27 Score=252.86 Aligned_cols=180 Identities=28% Similarity=0.383 Sum_probs=148.2
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcc---cceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVP---QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 77 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~---~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~ 77 (1230)
||+|+|.++. .+|+|+++|+++.+... .|.+|||||+....+.+||+|-+.+++.=. ..++..
T Consensus 45 Lk~l~g~l~p---~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~--~~~~~~--------- 110 (258)
T COG1120 45 LKCLAGLLKP---KSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPH--LGLFGR--------- 110 (258)
T ss_pred HHHHhccCCC---CCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcc--cccccC---------
Confidence 5788887763 47999999999976543 489999999998889999999999875310 011100
Q ss_pred hhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCC
Q 000907 78 AAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 157 (1230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPT 157 (1230)
..++..+.++..|+.+|+.+-++..+. .|||||||||.|||||+++|+||+|||||
T Consensus 111 -------------------~~~~D~~~v~~aL~~~~~~~la~r~~~-----~LSGGerQrv~iArALaQ~~~iLLLDEPT 166 (258)
T COG1120 111 -------------------PSKEDEEIVEEALELLGLEHLADRPVD-----ELSGGERQRVLIARALAQETPILLLDEPT 166 (258)
T ss_pred -------------------CCHhHHHHHHHHHHHhCcHHHhcCccc-----ccChhHHHHHHHHHHHhcCCCEEEeCCCc
Confidence 011123358889999999999997765 59999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 158 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 158 SGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
|.||.....+|++.++++++..|.|+|+++ |........+|++++|++|+++.+|+++++.
T Consensus 167 s~LDi~~Q~evl~ll~~l~~~~~~tvv~vl-HDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 167 SHLDIAHQIEVLELLRDLNREKGLTVVMVL-HDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred cccCHHHHHHHHHHHHHHHHhcCCEEEEEe-cCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 999999999999999999986667666655 6678899999999999999999999998763
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-26 Score=274.01 Aligned_cols=181 Identities=27% Similarity=0.363 Sum_probs=144.6
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|++..+ +.+.+++|+|+++.+|+.+||+|+||||||||||+|+|...+ .+|+|...+.
T Consensus 3 ~i~~~~ls~~~-------------g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~--~~G~i~~~~~-- 65 (530)
T COG0488 3 MITLENLSLAY-------------GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTRPKG-- 65 (530)
T ss_pred eEEEeeeEEee-------------CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcC--CCCeEeecCC--
Confidence 36677777765 457899999999999999999999999999999999998765 3799877542
Q ss_pred ChhcccceEEEEccCCccCCCCCHHHHHHHHHHhc-------------CCCC--------------CCHHHHHHHHHHHH
Q 000907 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLR-------------LSSE--------------VNSKTREMFVEEVM 792 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~-------------~~~~--------------~~~~~~~~~~~~~l 792 (1230)
-.++|++|++...+..||.+.+.-+..-. .+.. ....+.+.+++.++
T Consensus 66 ------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L 139 (530)
T COG0488 66 ------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEAL 139 (530)
T ss_pred ------ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 25899999999999999999886542100 0000 00011124567788
Q ss_pred HHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 000907 793 ELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQP 872 (1230)
Q Consensus 793 ~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 872 (1230)
..+|+.+. ++.+ ..||||||.|++||++|+.+|++|||||||+.||..+...+-+.|++. .| |+|+||||=
T Consensus 140 ~gLg~~~~-~~~~-----~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR 210 (530)
T COG0488 140 LGLGFPDE-DRPV-----SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDR 210 (530)
T ss_pred hcCCCCcc-cCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCH
Confidence 88888776 5554 469999999999999999999999999999999999999999999854 56 999999984
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-27 Score=293.92 Aligned_cols=176 Identities=26% Similarity=0.375 Sum_probs=134.8
Q ss_pred ccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 2 LALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 2 ~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
+.|+|.. + .+|+|++||.|+++.. .|+.++||+|++.+|. .||||||.++.+- .+.++ .
T Consensus 394 ~lL~g~~-p---~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~~~------------~~~ee-i 455 (588)
T PRK11174 394 NALLGFL-P---YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGNPD------------ASDEQ-L 455 (588)
T ss_pred HHHhcCC-C---CCcEEEECCEecccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCCCC------------CCHHH-H
Confidence 4566655 2 4899999999987654 4688999999988776 5999999996320 00000 0
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
.+.. +.+ ...|.+- .|+++.||.||++| .+||||||||++|||||+++|+||+||||||
T Consensus 456 -------------~~al---~~a-~l~~~i~---~lp~G~dT~vge~G-~~LSGGQrQRialARAll~~~~IliLDE~TS 514 (588)
T PRK11174 456 -------------QQAL---ENA-WVSEFLP---LLPQGLDTPIGDQA-AGLSVGQAQRLALARALLQPCQLLLLDEPTA 514 (588)
T ss_pred -------------HHHH---HHh-CHHHHHH---hcccccccccccCC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 0000 000 1122332 38899999999876 4699999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
+||+.++..|.+.|+++. .++|+|+..|++ +....+|+|++|++|++++.|+|+++.+
T Consensus 515 aLD~~te~~i~~~l~~~~--~~~TvIiItHrl--~~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 515 SLDAHSEQLVMQALNAAS--RRQTTLMVTHQL--EDLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred CCCHHHHHHHHHHHHHHh--CCCEEEEEecCh--HHHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 999999999999998775 357777766665 3456689999999999999999999864
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-27 Score=234.94 Aligned_cols=183 Identities=20% Similarity=0.385 Sum_probs=139.3
Q ss_pred CCCceeEEEEECCccCCCCc-----ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhccCCC
Q 000907 10 SSLKASGKVTYNGHDMHEFV-----PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPD 84 (1230)
Q Consensus 10 ~~~~~~G~V~vnG~~~~~~~-----~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~~~~~ 84 (1230)
++.+++|+|.++|+++.+.. .|+.+|.|.|.+.-|| +||+||+.|+.++.+..+
T Consensus 61 ~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~-------------------- 119 (253)
T COG1117 61 PGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD-------------------- 119 (253)
T ss_pred cCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch--------------------
Confidence 45689999999999986542 4799999999999999 899999999998875321
Q ss_pred chhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcccchHH
Q 000907 85 ADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSST 164 (1230)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGLDs~s 164 (1230)
.++++.+++....+. ..|++=+.|. ....+|||||+||++|||||.-+|+||+||||||+||+.+
T Consensus 120 ~~ldeiVe~sLk~Aa----LWdEVKDrL~-----------~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIs 184 (253)
T COG1117 120 KELDEIVESSLKKAA----LWDEVKDRLH-----------KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPIS 184 (253)
T ss_pred HHHHHHHHHHHHHhH----hHHHhHHHhh-----------CCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchh
Confidence 112222222222221 1222222111 1224699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHHHHHhcCCCCCCCCCchhhh
Q 000907 165 TFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFL 239 (1230)
Q Consensus 165 a~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~~f~~~G~~~p~~~n~ad~l 239 (1230)
+..|-+.+.++++ .-||+.++|.+.++....|+...+..|+++++|+.+++ |..|.+..+.||+
T Consensus 185 T~kIEeLi~eLk~---~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i--------F~~P~~~~TedYi 248 (253)
T COG1117 185 TLKIEELITELKK---KYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI--------FTNPKHKRTEDYI 248 (253)
T ss_pred HHHHHHHHHHHHh---ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh--------hcCccHHHHHHHh
Confidence 9999999998874 44555577889999999999999999999999999987 3456665555554
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=264.68 Aligned_cols=176 Identities=19% Similarity=0.297 Sum_probs=145.7
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcc-------cceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVP-------QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELS 73 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~-------~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~ 73 (1230)
|++|+|..+ ..+|+|++||.++..... ++.++||+|++.+++++||+||+.|+.++.+. +
T Consensus 36 Lr~L~Gl~~---p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~----------~ 102 (363)
T TIGR01186 36 VRMLNRLIE---PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGW----------P 102 (363)
T ss_pred HHHHhCCCC---CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHcCC----------C
Confidence 467888775 358999999999875432 56899999999999999999999998654321 0
Q ss_pred HHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeee
Q 000907 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFM 153 (1230)
Q Consensus 74 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlL 153 (1230)
..+ ..+.++++++.+||++..+...+ .|||||||||+|||||+.+|+|++|
T Consensus 103 ~~~------------------------~~~~~~~~l~~vgL~~~~~~~p~-----~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 103 EQE------------------------RKEKALELLKLVGLEEYEHRYPD-----ELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred HHH------------------------HHHHHHHHHHhcCCchhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 011 12246788999999888876664 5999999999999999999999999
Q ss_pred eCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 154 DEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 154 DEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||||||||+.++..+++.|+++.+..++|++ .++|...++..++|+|++|++|++++.|+++++.
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii-~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIV-FITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEE-EEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 9999999999999999999998764455555 5667778999999999999999999999998874
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.7e-27 Score=269.25 Aligned_cols=177 Identities=26% Similarity=0.419 Sum_probs=135.6
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 77 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~ 77 (1230)
+++|+|.+++ .+|+|++||.+.++.. +++.++||+|++.+|+ .|+||||.++..-. +.++
T Consensus 364 l~lL~G~~~~---~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~~~~------------s~e~- 426 (559)
T COG4988 364 LNLLLGFLAP---TQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLARPDA------------SDEE- 426 (559)
T ss_pred HHHHhCcCCC---CCceEEECCccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccCCcC------------CHHH-
Confidence 3567787763 5899999999987654 6799999999998777 59999999974310 1111
Q ss_pred hhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCC
Q 000907 78 AAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 157 (1230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPT 157 (1230)
+.+...+ ..+.+.+.-+++.||.||+.| +||||||+|||++||||+++++++++||||
T Consensus 427 -------------i~~al~~--------a~l~~~v~~p~GLdt~ige~G-~~LSgGQ~QRlaLARAll~~~~l~llDEpT 484 (559)
T COG4988 427 -------------IIAALDQ--------AGLLEFVPKPDGLDTVIGEGG-AGLSGGQAQRLALARALLSPASLLLLDEPT 484 (559)
T ss_pred -------------HHHHHHH--------hcHHHhhcCCCcccchhccCC-CCCCHHHHHHHHHHHHhcCCCCEEEecCCc
Confidence 1111100 012222233678899999755 689999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 158 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 158 SGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
++||..|+..|.+.|.++++ ++|+++ ++|....+. .+|+|++|++|+++++|+++++.+
T Consensus 485 A~LD~etE~~i~~~l~~l~~--~ktvl~-itHrl~~~~-~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 485 AHLDAETEQIILQALQELAK--QKTVLV-ITHRLEDAA-DADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred cCCCHhHHHHHHHHHHHHHh--CCeEEE-EEcChHHHh-cCCEEEEecCCceeccCCHHHHhh
Confidence 99999999999999999886 466555 445444444 459999999999999999999853
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=265.93 Aligned_cols=176 Identities=24% Similarity=0.352 Sum_probs=145.8
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
|++|+|... ..+|+|.+||.++.... .++.+|||+|++.++|++||+||+.|+.+.++. +..
T Consensus 47 Lr~iaGl~~---p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~----------~~~---- 109 (356)
T PRK11650 47 LRMVAGLER---ITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGM----------PKA---- 109 (356)
T ss_pred HHHHHCCCC---CCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCC----------CHH----
Confidence 578888765 35899999999886532 247899999999999999999999998653210 000
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
+.++.++++++.+||.+..|..+ +.|||||||||+|||||+.+|++|+|||||||
T Consensus 110 --------------------~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~QRvalARAL~~~P~llLLDEP~s~ 164 (356)
T PRK11650 110 --------------------EIEERVAEAARILELEPLLDRKP-----RELSGGQRQRVAMGRAIVREPAVFLFDEPLSN 164 (356)
T ss_pred --------------------HHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 11234778999999998888665 46999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||+.++..+.+.|+++.+..+.|+|+ ++|...++..++|+|++|++|+++..|+++++.
T Consensus 165 LD~~~r~~l~~~l~~l~~~~g~tii~-vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 165 LDAKLRVQMRLEIQRLHRRLKTTSLY-VTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 99999999999999987755566555 556668999999999999999999999999873
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-26 Score=221.24 Aligned_cols=178 Identities=29% Similarity=0.358 Sum_probs=131.7
Q ss_pred CceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee---c-----Chhc----ccceEEEE
Q 000907 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP---K-----NQET----FTRISGYC 751 (1230)
Q Consensus 684 ~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~---~-----~~~~----~~~~~~~v 751 (1230)
+...--+||||++.|||+++|+|.|||||||||+||+++..+. .|+|.+.-.+ . .+.+ .+..-|+|
T Consensus 17 g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~--~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~V 94 (258)
T COG4107 17 GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD--AGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFV 94 (258)
T ss_pred CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC--CCeEEEEcCCCCchhHhhhchHHHHHHhhhcccee
Confidence 3445678999999999999999999999999999999998764 7888876532 1 1111 12245999
Q ss_pred ccCCc--cCCC----CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHH
Q 000907 752 EQNDI--HSPY----VTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAV 825 (1230)
Q Consensus 752 ~q~~~--~~~~----ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~ 825 (1230)
.|++. +-.. -.+-|-++-... | . -....+...+.++..++...+ +. ..++.+|||++||+.|||
T Consensus 95 hQnP~DGLRm~VSAG~NiGERlma~G~-R---H--YG~iR~~a~~WL~~VEI~~~R--iD--D~PrtFSGGMqQRLQiAR 164 (258)
T COG4107 95 HQNPRDGLRMQVSAGGNIGERLMAIGA-R---H--YGNIRAEAQDWLEEVEIDLDR--ID--DLPRTFSGGMQQRLQIAR 164 (258)
T ss_pred ecCccccceeeeccCCccchhHHhhhh-h---h--hhhHHHHHHHHHHhcccCccc--cc--CcccccchHHHHHHHHHH
Confidence 99864 2221 233444332111 1 0 112233456777877775422 11 125689999999999999
Q ss_pred HHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCC
Q 000907 826 ELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPS 873 (1230)
Q Consensus 826 al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~ 873 (1230)
-|++.|+++|+||||.|||..-+..++++++.+..+ |..++++|||..
T Consensus 165 nLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~ 213 (258)
T COG4107 165 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA 213 (258)
T ss_pred HhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhH
Confidence 999999999999999999999999999999999755 999999999975
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-26 Score=265.93 Aligned_cols=176 Identities=21% Similarity=0.338 Sum_probs=146.3
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
|++|+|... ..+|+|.+||+++.... .++.+|||+|+..+||++||+||+.|+.+.+.. .+.
T Consensus 47 Lr~iaGl~~---p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~----------~~~---- 109 (353)
T TIGR03265 47 LRIIAGLER---QTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGM----------GRA---- 109 (353)
T ss_pred HHHHHCCCC---CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCC----------CHH----
Confidence 578888765 35899999999886432 257899999999999999999999998653210 000
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
+.++.++++++.+||.+..|... +.|||||||||+|||||+.+|++++|||||||
T Consensus 110 --------------------~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~ 164 (353)
T TIGR03265 110 --------------------EVAERVAELLDLVGLPGSERKYP-----GQLSGGQQQRVALARALATSPGLLLLDEPLSA 164 (353)
T ss_pred --------------------HHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 11234788999999999888655 46999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||..++.++.+.|+++.+..+.|+|+ ++|...++..++|+|++|++|+++++|+++++.
T Consensus 165 LD~~~r~~l~~~L~~l~~~~~~tvi~-vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~ 223 (353)
T TIGR03265 165 LDARVREHLRTEIRQLQRRLGVTTIM-VTHDQEEALSMADRIVVMNHGVIEQVGTPQEIY 223 (353)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEE-EcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999987755666655 556668999999999999999999999998874
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-26 Score=225.56 Aligned_cols=176 Identities=23% Similarity=0.335 Sum_probs=146.2
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcc-cceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~-~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
||.+||... -.+|+|++||.+.+.... +|-++.+.||+.+|..|||++|+.++.. ++-+ +..++
T Consensus 42 LnLIAGF~~---P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~---P~Lk------L~a~~--- 106 (231)
T COG3840 42 LNLIAGFET---PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLS---PGLK------LNAEQ--- 106 (231)
T ss_pred HHHHHhccC---CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCC---cccc------cCHHH---
Confidence 456677654 358999999999875443 5889999999999999999999998742 1111 11111
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
++.++.++...||..+.+-+-| .|||||||||++||.|+++-+||+||||.|+
T Consensus 107 ----------------------r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQRvALARclvR~~PilLLDEPFsA 159 (231)
T COG3840 107 ----------------------REKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQRVALARCLVREQPILLLDEPFSA 159 (231)
T ss_pred ----------------------HHHHHHHHHHhChhhHhhhCcc-----ccCchHHHHHHHHHHHhccCCeEEecCchhh
Confidence 2347889999999999886554 6999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||+.-+.++...+.++++..+.|+++.+||| +++...+|+++++++|+|+++|+.++..
T Consensus 160 LdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~-~Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 160 LDPALRAEMLALVSQLCDERKMTLLMVTHHP-EDAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred cCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 9999999999999999988888888877776 6888899999999999999999998864
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.4e-27 Score=290.78 Aligned_cols=168 Identities=27% Similarity=0.412 Sum_probs=135.3
Q ss_pred eeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhccCCCchhhHH
Q 000907 14 ASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVF 90 (1230)
Q Consensus 14 ~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 90 (1230)
.+|+|++||.|+++.. .|+.++||+|++.+|. .||+|||.++.+- ++.+| .
T Consensus 382 ~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~------------at~ee-------------i 435 (567)
T COG1132 382 TSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRPD------------ATDEE-------------I 435 (567)
T ss_pred CCCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCCC------------CCHHH-------------H
Confidence 5899999999998764 4689999999888887 7999999997531 11111 0
Q ss_pred HHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcccchHHHHHHHH
Q 000907 91 MKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVN 170 (1230)
Q Consensus 91 ~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGLDs~sa~~I~~ 170 (1230)
.++ ++.+ ...|++.+ |++++||.||++| .+||||||||++||||++++|+||+||||||+||+.|+..|++
T Consensus 436 ~~a----~k~a-~~~d~I~~---lp~g~dt~vge~G-~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~ 506 (567)
T COG1132 436 EEA----LKLA-NAHEFIAN---LPDGYDTIVGERG-VNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQD 506 (567)
T ss_pred HHH----HHHh-ChHHHHHh---CcccccceecCCC-ccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHH
Confidence 111 1111 23455555 7999999999655 4699999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 171 SLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 171 ~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
.++++.+ ++|+++ |.|+.+++.+ +|+|+||++|++++.|+|+++.+
T Consensus 507 ~l~~l~~--~rT~ii-IaHRlsti~~-aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 507 ALKKLLK--GRTTLI-IAHRLSTIKN-ADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred HHHHHhc--CCEEEE-EeccHhHHHh-CCEEEEEECCEEEEecCHHHHHH
Confidence 9997653 567777 6666678877 89999999999999999999976
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-26 Score=262.26 Aligned_cols=176 Identities=24% Similarity=0.333 Sum_probs=144.7
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc------ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSR 74 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~------~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~ 74 (1230)
||+|+|..+. .+|+|.++|.++.... .++.+|||+|+..+++.+||+||+.|..+..+. ..
T Consensus 48 lr~I~gl~~p---~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~----------~~ 114 (343)
T TIGR02314 48 IRCVNLLERP---TSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT----------PK 114 (343)
T ss_pred HHHHhcCCCC---CceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCC----------CH
Confidence 4677777653 4799999999986532 256899999999999999999999987543210 00
Q ss_pred HHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeee
Q 000907 75 REKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMD 154 (1230)
Q Consensus 75 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLD 154 (1230)
. +.++.++++++.+||.+..|... +.|||||||||+|||||+++|+||+||
T Consensus 115 ~------------------------~~~~~v~e~l~~vgL~~~~~~~~-----~~LSgGqkQRV~IARAL~~~P~iLLlD 165 (343)
T TIGR02314 115 D------------------------EIKRKVTELLALVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCD 165 (343)
T ss_pred H------------------------HHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 0 11224678999999999888665 469999999999999999999999999
Q ss_pred CCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 155 EISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 155 EPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
|||||||+.++..+++.|+++++..+.|+|+ ++|....+...||+|++|++|++++.|+++++.
T Consensus 166 EPts~LD~~t~~~i~~lL~~l~~~~g~tiil-iTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 166 EATSALDPATTQSILELLKEINRRLGLTILL-ITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999998755666555 556678999999999999999999999998873
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-26 Score=264.00 Aligned_cols=176 Identities=23% Similarity=0.348 Sum_probs=146.0
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcc-cceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~-~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
|++|+|... ..+|+|++||.++..... ++.+|||+|+..+||.+||+||+.|+.+.++.. ..
T Consensus 49 Lr~IaGl~~---p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~----------~~---- 111 (351)
T PRK11432 49 LRLVAGLEK---PTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVP----------KE---- 111 (351)
T ss_pred HHHHHCCCC---CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCC----------HH----
Confidence 577888865 358999999999865433 478999999999999999999999987543210 00
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
+.++.++++++.+||.+..|... +.|||||||||+|||||+.+|+||+|||||||
T Consensus 112 --------------------~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~ 166 (351)
T PRK11432 112 --------------------ERKQRVKEALELVDLAGFEDRYV-----DQISGGQQQRVALARALILKPKVLLFDEPLSN 166 (351)
T ss_pred --------------------HHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence 11234788999999988877554 46999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||+.++..+.+.|+++.+..+.|+++ ++|...++..++|+|++|++|+++..|+++++.
T Consensus 167 LD~~~r~~l~~~l~~l~~~~g~tii~-vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 167 LDANLRRSMREKIRELQQQFNITSLY-VTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEE-EcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999997755566555 566678999999999999999999999999873
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-26 Score=242.77 Aligned_cols=177 Identities=23% Similarity=0.356 Sum_probs=144.4
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcccceEEEeccc---ccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQH---DIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 77 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~~~~~~yV~Q~---d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~ 77 (1230)
+|+|.|.++ ..+|+|.++|.+.+....+..+|||||. |+-|| +||+|-+..+.--+. .+++.+.
T Consensus 47 lK~iLGll~---p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~--g~~~~~~------- 113 (254)
T COG1121 47 LKAILGLLK---PSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKK--GWFRRLN------- 113 (254)
T ss_pred HHHHhCCCc---CCcceEEEccccccccccCCeEEEcCcccccCCCCC-cCHHHHHHccCcccc--ccccccc-------
Confidence 467777765 3489999999988765556789999995 67777 699999988743221 1121111
Q ss_pred hhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCC
Q 000907 78 AAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 157 (1230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPT 157 (1230)
++.++.+++.|+.+|+.+.+|-.||+ |||||+|||-|||||+++|++|+|||||
T Consensus 114 ---------------------~~d~~~v~~aL~~Vgm~~~~~r~i~~-----LSGGQ~QRV~lARAL~~~p~lllLDEP~ 167 (254)
T COG1121 114 ---------------------KKDKEKVDEALERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNPDLLLLDEPF 167 (254)
T ss_pred ---------------------HHHHHHHHHHHHHcCchhhhCCcccc-----cCcHHHHHHHHHHHhccCCCEEEecCCc
Confidence 11134689999999999999999985 9999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 158 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 158 SGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
+|+|+.++..+.+.|+++++. |+| |+.+||....+...||+|+.|+ +++++.|+++++.
T Consensus 168 ~gvD~~~~~~i~~lL~~l~~e-g~t-Il~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~ 226 (254)
T COG1121 168 TGVDVAGQKEIYDLLKELRQE-GKT-VLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVL 226 (254)
T ss_pred ccCCHHHHHHHHHHHHHHHHC-CCE-EEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhcc
Confidence 999999999999999999875 555 5568899999999999999996 5788899998874
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-26 Score=259.79 Aligned_cols=176 Identities=24% Similarity=0.343 Sum_probs=145.5
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc--ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV--PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~--~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
+|+|+|.+. ..+|+|+++|+++.... .++.+|||+|++.+++.+||+||+.|.+++.+.. ..
T Consensus 50 l~~l~Gl~~---p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~----------~~--- 113 (306)
T PRK13537 50 LRMLLGLTH---PDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLS----------AA--- 113 (306)
T ss_pred HHHHhcCCC---CCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCC----------HH---
Confidence 467788765 35799999999976432 3578999999999999999999999876653210 00
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
+....++.+++.+||.+.+|+.++ +||||||||++||+||+.+|++++|||||+
T Consensus 114 ---------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~aL~~~P~lllLDEPt~ 167 (306)
T PRK13537 114 ---------------------AARALVPPLLEFAKLENKADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTT 167 (306)
T ss_pred ---------------------HHHHHHHHHHHHcCCchHhcCchh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCCc
Confidence 011236778999999999998885 599999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|||+.++..+++.|+++++ .|.|+++ ++|..+++...+|+|++|++|++++.|+.+++..
T Consensus 168 gLD~~~~~~l~~~l~~l~~-~g~till-~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 168 GLDPQARHLMWERLRSLLA-RGKTILL-TTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEE-ECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999865 4555554 5566789999999999999999999999998864
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-26 Score=263.58 Aligned_cols=179 Identities=18% Similarity=0.307 Sum_probs=145.6
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
|++|+|..... ..+|+|.++|.++.... .++.+|||+|+..++|.+||+|||.|+.+.++. ...
T Consensus 48 Lr~iaGl~~p~-~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~----------~~~---- 112 (362)
T TIGR03258 48 LRAIAGFVKAA-GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKM----------PKA---- 112 (362)
T ss_pred HHHHhCCCCCC-CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCC----------CHH----
Confidence 57788876532 11399999999886432 247899999999999999999999998654310 000
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
+.++.++++++.+||.+..|..++ .|||||||||+|||||+.+|++|+|||||||
T Consensus 113 --------------------~~~~~v~~~l~~~gL~~~~~~~~~-----~LSgGq~QRvaLARAL~~~P~llLLDEP~s~ 167 (362)
T TIGR03258 113 --------------------DIAERVADALKLVGLGDAAAHLPA-----QLSGGMQQRIAIARAIAIEPDVLLLDEPLSA 167 (362)
T ss_pred --------------------HHHHHHHHHHHhcCCCchhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence 112347889999999998887664 6999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||+.++.++.+.|+++.+..++++++.++|...++..++|+|++|++|+++..|+++++.
T Consensus 168 LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 168 LDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999887542344555667778999999999999999999999999884
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-26 Score=263.51 Aligned_cols=176 Identities=24% Similarity=0.330 Sum_probs=145.9
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
|++|+|... ..+|+|.++|.++.... .++.+|||+|+..+||.+||+|||.|+.+.++. ...
T Consensus 57 Lr~IaGl~~---p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~----------~~~---- 119 (375)
T PRK09452 57 LRLIAGFET---PDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKT----------PAA---- 119 (375)
T ss_pred HHHHhCCCC---CCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCC----------CHH----
Confidence 578888875 34799999999886432 257899999999999999999999998653210 000
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
+.++.++++++.+||.+..|..+ ..|||||||||+|||||+.+|++|+|||||||
T Consensus 120 --------------------~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~ 174 (375)
T PRK09452 120 --------------------EITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQQRVAIARAVVNKPKVLLLDESLSA 174 (375)
T ss_pred --------------------HHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence 11224678999999998888766 46999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||..++..+.+.|+++.+..+.|+|+ ++|...++..++|+|++|++|+++..|+++++.
T Consensus 175 LD~~~r~~l~~~L~~l~~~~g~tiI~-vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 175 LDYKLRKQMQNELKALQRKLGITFVF-VTHDQEEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999998755555555 666678999999999999999999999998873
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=303.68 Aligned_cols=186 Identities=25% Similarity=0.400 Sum_probs=147.7
Q ss_pred eeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeec
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++. +.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|
T Consensus 636 ~i~~~~~~~~~~~-----------~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~--~~G~i~~~g--- 699 (1522)
T TIGR00957 636 SITVHNATFTWAR-----------DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVHMKG--- 699 (1522)
T ss_pred cEEEEEeEEEcCC-----------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcc--CCcEEEECC---
Confidence 5899999998741 124699999999999999999999999999999999998765 479999987
Q ss_pred ChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCCCC
Q 000907 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-------PLRQALVGLPGVNG 812 (1230)
Q Consensus 740 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~~~~~ 812 (1230)
.++||+|++.++ ..|++||+.|+.. ... ++.+++++..++. +-.++.+|..+ .+
T Consensus 700 -------~i~yv~Q~~~l~-~~Ti~eNI~~g~~------~~~----~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g-~~ 760 (1522)
T TIGR00957 700 -------SVAYVPQQAWIQ-NDSLRENILFGKA------LNE----KYYQQVLEACALLPDLEILPSGDRTEIGEKG-VN 760 (1522)
T ss_pred -------EEEEEcCCcccc-CCcHHHHhhcCCc------cCH----HHHHHHHHHhCCHHHHHhcCCCCCceecCCC-CC
Confidence 489999998876 5799999988521 111 1223344433332 22345666543 57
Q ss_pred CCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHH--HhCCCEEEEEecCCCHHHHHHHhc
Q 000907 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNT--VDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 813 lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~--~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||||||++||||++.+|++++||||||+||+.+++.+.+.+.+. ..+|+|+|++||+++. ....|+
T Consensus 761 LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~--l~~~D~ 830 (1522)
T TIGR00957 761 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY--LPQVDV 830 (1522)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh--hhhCCE
Confidence 9999999999999999999999999999999999999999988653 2358999999999863 345777
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.6e-26 Score=261.83 Aligned_cols=176 Identities=21% Similarity=0.285 Sum_probs=145.1
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
|++|+|... ..+|+|+++|.++.... .++.+|||+|+..+||.+||.||+.|+.+.+.. ...
T Consensus 62 Lr~IaGl~~---p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~----------~~~---- 124 (377)
T PRK11607 62 LRMLAGFEQ---PTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKL----------PKA---- 124 (377)
T ss_pred HHHHhCCCC---CCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCC----------CHH----
Confidence 577888865 34799999999876432 357899999999999999999999998653210 000
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
+.++.++++++.+||.+..|..+ +.|||||||||+|||||+.+|++|+|||||||
T Consensus 125 --------------------~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~ 179 (377)
T PRK11607 125 --------------------EIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQRQRVALARSLAKRPKLLLLDEPMGA 179 (377)
T ss_pred --------------------HHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 11234778999999998877655 46999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||..++..+.+.|+++.+..+.|+|+ ++|...++..++|+|++|++|+++..|+++++.
T Consensus 180 LD~~~r~~l~~~l~~l~~~~g~tii~-vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 180 LDKKLRDRMQLEVVDILERVGVTCVM-VTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEE-EcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 99999999999999887655655555 556678999999999999999999999999874
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-25 Score=259.26 Aligned_cols=180 Identities=23% Similarity=0.314 Sum_probs=145.5
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
||+|+|..+. .+|+|++||+++.... .++.++||+|++.+++.+||+||+.|+.+...... . .+.
T Consensus 45 Lr~IaGl~~p---~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~---~---~~~----- 110 (353)
T PRK10851 45 LRIIAGLEHQ---TSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRE---R---PNA----- 110 (353)
T ss_pred HHHHhCCCCC---CCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhccccc---C---CCH-----
Confidence 5778887653 4799999999886432 24679999999999999999999999865321000 0 000
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
++.++.++++++.+||++..|..+ +.|||||||||+|||||+.+|++|+|||||||
T Consensus 111 -------------------~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalArAL~~~P~llLLDEP~s~ 166 (353)
T PRK10851 111 -------------------AAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQKQRVALARALAVEPQILLLDEPFGA 166 (353)
T ss_pred -------------------HHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 011234678999999998888665 46999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||+.++..+.+.|+++.+..+.| ++.++|...++..++|+|++|++|++++.|+++++.
T Consensus 167 LD~~~r~~l~~~L~~l~~~~g~t-ii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 167 LDAQVRKELRRWLRQLHEELKFT-SVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999988644555 455667788999999999999999999999998874
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-25 Score=256.37 Aligned_cols=176 Identities=27% Similarity=0.381 Sum_probs=144.8
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC--cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF--VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~--~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
||+|+|.++. .+|+|.++|.++... ..++.+|||+|++.+++.+||+||+.|.+++.+.. ..
T Consensus 36 l~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~----------~~--- 99 (302)
T TIGR01188 36 IRMLTTLLRP---TSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLP----------KD--- 99 (302)
T ss_pred HHHHhCCCCC---CceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCC----------HH---
Confidence 4678887753 479999999987542 23467999999999999999999999976543210 00
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
+..+.++.+++.+||.+..|+.++ .|||||||||+||+||+.+|++|+|||||+
T Consensus 100 ---------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 100 ---------------------EAEERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred ---------------------HHHHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 011236789999999998888775 599999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|||+.++..+++.|+++++ .|.|+++ ++|...++...+|+|++|++|++++.|+.+++.+
T Consensus 154 gLD~~~~~~l~~~l~~~~~-~g~tvi~-~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKE-EGVTILL-TTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEE-ECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999999875 3555555 5566789999999999999999999999998755
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-25 Score=235.29 Aligned_cols=165 Identities=24% Similarity=0.353 Sum_probs=133.0
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc------c-cceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV------P-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELS 73 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~------~-~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~ 73 (1230)
|++|+|...+ .+|+|.++|.+++... . ++.+|||.|+-.|+|++||+||+.....+.+...
T Consensus 48 Lniig~ld~p---t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~--------- 115 (226)
T COG1136 48 LNLLGGLDKP---TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSA--------- 115 (226)
T ss_pred HHHHhcccCC---CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCCh---------
Confidence 4556665543 6899999998887543 1 3689999999999999999999998665543110
Q ss_pred HHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCccccc-ccccCCccccCcccccchhHHHHHHhcCCceee
Q 000907 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCAD-TVVGDEMLRGISGGQRKRVTTGEMLVGPAHALF 152 (1230)
Q Consensus 74 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~d-T~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILl 152 (1230)
. +.++..+.+++.+||.+..+ ... ..|||||||||+|||||+.+|+|++
T Consensus 116 -~------------------------~~~~~~~~l~~~lgl~~~~~~~~p-----~eLSGGqqQRVAIARAL~~~P~iil 165 (226)
T COG1136 116 -G------------------------RRKRAAEELLEVLGLEDRLLKKKP-----SELSGGQQQRVAIARALINNPKIIL 165 (226)
T ss_pred -h------------------------HHHHHHHHHHHhcCChhhhccCCc-----hhcCHHHHHHHHHHHHHhcCCCeEE
Confidence 0 11234678999999997776 544 4699999999999999999999999
Q ss_pred eeCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeE
Q 000907 153 MDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQI 209 (1230)
Q Consensus 153 LDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~v 209 (1230)
.||||..||+.++..|++.|+++++..|.|+|+.+|- +++...+||++.|.+|++
T Consensus 166 ADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd--~~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 166 ADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHD--PELAKYADRVIELKDGKI 220 (226)
T ss_pred eeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCC--HHHHHhCCEEEEEeCCee
Confidence 9999999999999999999999998666676665543 578889999999999993
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-25 Score=296.77 Aligned_cols=170 Identities=21% Similarity=0.317 Sum_probs=135.7
Q ss_pred eeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChhcccceEEEEccCCccCCCCCHHH
Q 000907 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYE 765 (1230)
Q Consensus 686 ~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e 765 (1230)
+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++| .++||+|++.+++ .||+|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~--~~G~i~~~g----------~iayv~Q~~~l~~-~Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP--SEGKIKHSG----------RISFSPQTSWIMP-GTIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECC----------EEEEEeCCCccCC-ccHHH
Confidence 5699999999999999999999999999999999998775 479999988 3899999998887 49999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeC
Q 000907 766 SLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-------PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 838 (1230)
Q Consensus 766 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDE 838 (1230)
|+.|+.. .... +.+++++..+|. +-.++.+|.. ...||||||||++||||++.+|++++|||
T Consensus 506 NI~~g~~------~~~~----~~~~~~~~~~L~~~l~~l~~g~~t~vg~~-g~~LSgGqkqRi~lARAl~~~~~illLDe 574 (1490)
T TIGR01271 506 NIIFGLS------YDEY----RYTSVIKACQLEEDIALFPEKDKTVLGEG-GITLSGGQRARISLARAVYKDADLYLLDS 574 (1490)
T ss_pred HHHhccc------cchH----HHHHHHHHHhHHHHHHhccccccccccCc-CCCcCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9998631 1111 112222222221 1224556654 35799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 839 PTSGLDARAAAVVMRT-VRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 839 PtsgLD~~~~~~i~~~-l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||+|||+.++..+.+. ++++. +|+|+|++||++.. ....|+
T Consensus 575 p~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~--~~~ad~ 616 (1490)
T TIGR01271 575 PFTHLDVVTEKEIFESCLCKLM-SNKTRILVTSKLEH--LKKADK 616 (1490)
T ss_pred CcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHH--HHhCCE
Confidence 9999999999999974 66654 58999999999873 345776
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-25 Score=286.07 Aligned_cols=174 Identities=24% Similarity=0.311 Sum_probs=132.8
Q ss_pred ccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 2 LALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 2 ~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
|.|+|... ..+|+|++||+++++.. .|+.+|||+|++.+|+ .||+|||.++.... .+..
T Consensus 497 klL~gl~~---p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~~~~--------------~e~i 558 (686)
T TIGR03797 497 RLLLGFET---PESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGAPLT--------------LDEA 558 (686)
T ss_pred HHHhCCCC---CCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCCCCC--------------HHHH
Confidence 55666654 34899999999987653 4689999999988776 69999999864210 0000
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
.+.... + ...+.+. .|+++.||.||++| .+||||||||++|||||+++|+|++||||||
T Consensus 559 -------------~~al~~---a-~l~~~i~---~lp~G~dt~ige~G-~~LSGGQrQRialARAll~~p~iLiLDEpTS 617 (686)
T TIGR03797 559 -------------WEAARM---A-GLAEDIR---AMPMGMHTVISEGG-GTLSGGQRQRLLIARALVRKPRILLFDEATS 617 (686)
T ss_pred -------------HHHHHH---c-CcHHHHH---hccccccccccCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 000000 0 0122222 37899999999776 5799999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
+||+.++.+|.+.|+++ ++|+|+..|++ +....+|+|++|++|++++.|+++++.+
T Consensus 618 ~LD~~te~~i~~~L~~~----~~T~IiItHr~--~~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 618 ALDNRTQAIVSESLERL----KVTRIVIAHRL--STIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred CCCHHHHHHHHHHHHHh----CCeEEEEecCh--HHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999864 46666655554 4456699999999999999999999864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-24 Score=236.66 Aligned_cols=161 Identities=24% Similarity=0.307 Sum_probs=128.3
Q ss_pred EeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChhcccceEEEEccCCccCCCCCHHHHH
Q 000907 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESL 767 (1230)
Q Consensus 688 iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l 767 (1230)
-|.-=.+++..||+++++||||-||||+.++|+|..+|. +|+ .. .-.++|=||--.--...||++-|
T Consensus 356 ~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd--eg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l 422 (591)
T COG1245 356 KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD--EGS----EE-------DLKVSYKPQYISPDYDGTVEDLL 422 (591)
T ss_pred EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCC--CCC----Cc-------cceEeecceeecCCCCCcHHHHH
Confidence 455556888999999999999999999999999987754 454 11 12467777765444678999987
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHH
Q 000907 768 LYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 847 (1230)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~ 847 (1230)
.-...-+.. ..-...++.+-|.|++..+..+ .+|||||.|||+||.+|.+++++.+||||++-||++.
T Consensus 423 ~~~~~~~~~-------~s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEq 490 (591)
T COG1245 423 RSAIRSAFG-------SSYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQ 490 (591)
T ss_pred HHhhhhhcc-------cchhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHH
Confidence 654322111 1123467888899998888775 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCEEEEEecCCC
Q 000907 848 AAVVMRTVRNTVD-TGRTVVCTIHQPS 873 (1230)
Q Consensus 848 ~~~i~~~l~~~~~-~g~tvi~~~H~~~ 873 (1230)
+..+-+.+|+... .++|.+++-||.-
T Consensus 491 R~~vakvIRR~~e~~~kta~vVdHDi~ 517 (591)
T COG1245 491 RIIVAKVIRRFIENNEKTALVVDHDIY 517 (591)
T ss_pred HHHHHHHHHHHHhhcCceEEEEeccee
Confidence 9999999999875 4889999999865
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-25 Score=244.76 Aligned_cols=176 Identities=26% Similarity=0.345 Sum_probs=140.6
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC------cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF------VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSR 74 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~------~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~ 74 (1230)
||+|+|.++. .+|+|.+||.++... ..++.++||+|++.+++.+||+||+.++.+.... ...
T Consensus 43 l~~l~G~~~p---~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~---------~~~ 110 (235)
T cd03261 43 LRLIVGLLRP---DSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTR---------LSE 110 (235)
T ss_pred HHHHhCCCCC---CceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccC---------CCH
Confidence 4678887653 479999999987542 2356799999999999999999999987532110 000
Q ss_pred HHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeee
Q 000907 75 REKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMD 154 (1230)
Q Consensus 75 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLD 154 (1230)
. +..+.++.+++.+||.+..++.++ .|||||||||+||+||+.+|+|++||
T Consensus 111 ~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~ia~al~~~p~llllD 161 (235)
T cd03261 111 E------------------------EIREIVLEKLEAVGLRGAEDLYPA-----ELSGGMKKRVALARALALDPELLLYD 161 (235)
T ss_pred H------------------------HHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 0 011236778999999888777664 59999999999999999999999999
Q ss_pred CCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhH
Q 000907 155 EISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218 (1230)
Q Consensus 155 EPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l 218 (1230)
|||+|||+.++..+++.|+++++..++|+++ ++|...++...+|+|++|++|++++.|+++++
T Consensus 162 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~-vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 162 EPTAGLDPIASGVIDDLIRSLKKELGLTSIM-VTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCcEEEE-EecCHHHHHHhcCEEEEEECCeEEEecCHHHH
Confidence 9999999999999999999987533556555 55666788999999999999999999998775
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-25 Score=239.04 Aligned_cols=177 Identities=23% Similarity=0.342 Sum_probs=145.1
Q ss_pred CccccCCcCCCCceeEEEEECCccCC----CCcccceEEEecccc-cccCCCCHHHHHHHHhhccCCCCccchhhhhhHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMH----EFVPQRTAAYISQHD-IHIGEMTVRETLAFSARCQGVGSRYDMLVELSRR 75 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~----~~~~~~~~~yV~Q~d-~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~ 75 (1230)
++.|+|.+.+ .+|+|.++|.+.+ ....++.+|||.|++ ..+..-||.|-+.|+.+..+. +..
T Consensus 47 ~~~l~GLl~p---~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~----------~~~ 113 (235)
T COG1122 47 LKLLNGLLKP---TSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGL----------PRE 113 (235)
T ss_pred HHHHcCcCcC---CCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcCC----------CHH
Confidence 3567777764 4699999999976 233578999999996 345556999999999765431 111
Q ss_pred HHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeC
Q 000907 76 EKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDE 155 (1230)
Q Consensus 76 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDE 155 (1230)
+++++++.+++.+||.+.+|... ..|||||||||+||.+|+.+|++++|||
T Consensus 114 ------------------------e~~~rv~~~l~~vgl~~~~~r~p-----~~LSGGqkqRvaIA~vLa~~P~iliLDE 164 (235)
T COG1122 114 ------------------------EIEERVAEALELVGLEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDE 164 (235)
T ss_pred ------------------------HHHHHHHHHHHHcCchhhccCCc-----cccCCcceeeHHhhHHHHcCCCEEEEcC
Confidence 12346889999999999988554 5699999999999999999999999999
Q ss_pred CCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 156 ISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 156 PTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
||||||+....++++.++++... ++.+++.++|....+...+|++++|++|+++++|++.++.+
T Consensus 165 Pta~LD~~~~~~l~~~l~~L~~~-~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 165 PTAGLDPKGRRELLELLKKLKEE-GGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 99999999999999999999874 34455667788999999999999999999999999877643
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-25 Score=254.10 Aligned_cols=176 Identities=25% Similarity=0.325 Sum_probs=145.1
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC--cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF--VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~--~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
||+|+|.+.. .+|+|.++|.++... ..++.+|||+|++.+++.+||+||+.|.+.+.+.. ..
T Consensus 84 l~~L~Gl~~p---~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~----------~~--- 147 (340)
T PRK13536 84 ARMILGMTSP---DAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMS----------TR--- 147 (340)
T ss_pred HHHHHcCCCC---CceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCC----------HH---
Confidence 4678887753 479999999987643 23578999999999999999999999865543200 00
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
+..+.++.+++.+||++.+|+.++ .||||||||++||+||+.+|++++|||||+
T Consensus 148 ---------------------~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~ 201 (340)
T PRK13536 148 ---------------------EIEAVIPSLLEFARLESKADARVS-----DLSGGMKRRLTLARALINDPQLLILDEPTT 201 (340)
T ss_pred ---------------------HHHHHHHHHHHHcCCchhhCCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 011235678899999999998885 599999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|||+.++..+++.|+++++ .|.|+++ ++|..+++.+.||+|++|++|++++.|+.+++..
T Consensus 202 gLD~~~r~~l~~~l~~l~~-~g~tili-sSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 202 GLDPHARHLIWERLRSLLA-RGKTILL-TTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEE-ECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999875 4555555 5567789999999999999999999999999865
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-25 Score=278.50 Aligned_cols=177 Identities=18% Similarity=0.260 Sum_probs=136.5
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 77 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~ 77 (1230)
+|+|+|..++ .+|+|++||.++++.. .++.++||+|++.+|+. |++|||.++.... . ++
T Consensus 384 l~lL~gl~~p---~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~~~-------------d-~~ 445 (592)
T PRK10790 384 ASLLMGYYPL---TEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGRDIS-------------E-EQ 445 (592)
T ss_pred HHHHhcccCC---CCceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCCCCC-------------H-HH
Confidence 3567777653 3799999999987643 46899999999998875 9999999863110 0 00
Q ss_pred hhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCC
Q 000907 78 AAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 157 (1230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPT 157 (1230)
. .+.... . -.++.++ .|+++.||.||+.+ .+||||||||++|||||+++|+|++|||||
T Consensus 446 i-------------~~a~~~---~--gl~~~i~--~lp~Gldt~i~e~g-~~LSGGqrQRialARaLl~~~~illlDEpt 504 (592)
T PRK10790 446 V-------------WQALET---V--QLAELAR--SLPDGLYTPLGEQG-NNLSVGQKQLLALARVLVQTPQILILDEAT 504 (592)
T ss_pred H-------------HHHHHH---c--CcHHHHH--hccccccccccCCC-CCCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 0 000000 0 0111222 27889999999865 569999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 158 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 158 SGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|+||+.++..|.+.|+++.+ ++|+|+..|++ +....+|+|++|++|++++.|+++++.+
T Consensus 505 s~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~--~~l~~~D~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 505 ANIDSGTEQAIQQALAAVRE--HTTLVVIAHRL--STIVEADTILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred ccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999998753 57777777665 4566799999999999999999999864
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-25 Score=256.73 Aligned_cols=176 Identities=23% Similarity=0.352 Sum_probs=143.9
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
||+|+|... ..+|+|.++|.++.... .++.++||+|+..+++.+||+||+.|+.+.++. ...
T Consensus 46 L~~iaGl~~---p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~----------~~~---- 108 (369)
T PRK11000 46 LRMIAGLED---ITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGA----------KKE---- 108 (369)
T ss_pred HHHHhCCCC---CCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCC----------CHH----
Confidence 577888765 34799999999886432 246799999999999999999999998653210 000
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
+.++.++.+++.+||.+..|..++ .|||||||||+|||||+.+|++|+|||||||
T Consensus 109 --------------------~~~~~~~~~l~~lgL~~~~~~~~~-----~LSgGq~QRvaLAraL~~~P~lLLLDEPts~ 163 (369)
T PRK11000 109 --------------------EINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163 (369)
T ss_pred --------------------HHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 011246789999999988887664 6999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||+.++..+.+.|+++.+..+.|+|+ ++|...++..++|+|++|++|++++.|+++++.
T Consensus 164 LD~~~~~~l~~~L~~l~~~~g~tvI~-vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 164 LDAALRVQMRIEISRLHKRLGRTMIY-VTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999987644566555 555667999999999999999999999998874
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-25 Score=226.21 Aligned_cols=176 Identities=19% Similarity=0.319 Sum_probs=140.9
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc----ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV----PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRRE 76 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~----~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e 76 (1230)
||+|+|..+. .+|+|.++|+|++... .+.-++||||....|++|||+|||..++..+.. ++.
T Consensus 46 Lkti~Gl~~~---~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~-~~~---------- 111 (237)
T COG0410 46 LKTIMGLVRP---RSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD-KEA---------- 111 (237)
T ss_pred HHHHhCCCCC---CCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc-ccc----------
Confidence 5677887753 3899999999998643 357899999999999999999999987654321 000
Q ss_pred HhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcC-CcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeC
Q 000907 77 KAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLD-LDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDE 155 (1230)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lg-L~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDE 155 (1230)
... ..|.+.+.+= |.+-++..-| .|||||+|-++|||||+++|++|+|||
T Consensus 112 ------~~~------------------~~e~v~~lFP~Lker~~~~aG-----~LSGGEQQMLAiaRALm~~PklLLLDE 162 (237)
T COG0410 112 ------QER------------------DLEEVYELFPRLKERRNQRAG-----TLSGGEQQMLAIARALMSRPKLLLLDE 162 (237)
T ss_pred ------ccc------------------cHHHHHHHChhHHHHhcCccc-----CCChHHHHHHHHHHHHhcCCCEEEecC
Confidence 000 0222333222 4445566555 499999999999999999999999999
Q ss_pred CCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 156 ISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 156 PTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
||.||-|.-..+|.+.++++++.. +.+|+.+.|+...+.+.+||.+||.+|++++.|+.+++..
T Consensus 163 Ps~GLaP~iv~~I~~~i~~l~~~~-g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 163 PSEGLAPKIVEEIFEAIKELRKEG-GMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred CccCcCHHHHHHHHHHHHHHHHcC-CcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 999999999999999999998743 4678889999999999999999999999999999998853
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-25 Score=227.49 Aligned_cols=175 Identities=24% Similarity=0.289 Sum_probs=143.9
Q ss_pred ccccCCcCCCCceeEEEEECCccCCCCc----ccceEEEecccc--cccCCCCHHHHHHHHhhccCCCCccchhhhhhHH
Q 000907 2 LALAGKLDSSLKASGKVTYNGHDMHEFV----PQRTAAYISQHD--IHIGEMTVRETLAFSARCQGVGSRYDMLVELSRR 75 (1230)
Q Consensus 2 ~~Lag~~~~~~~~~G~V~vnG~~~~~~~----~~~~~~yV~Q~d--~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~ 75 (1230)
++|+|..+. .+|+|+++|.+..... ..+.+-+|+||+ .+-|..||++.|.=..+.++..
T Consensus 51 r~l~Gl~~p---~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~------------ 115 (252)
T COG1124 51 RLLAGLEKP---SSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLS------------ 115 (252)
T ss_pred HHHhcccCC---CCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCCcc------------
Confidence 567777653 5899999998876542 357899999997 4889999999997654432110
Q ss_pred HHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeC
Q 000907 76 EKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDE 155 (1230)
Q Consensus 76 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDE 155 (1230)
+.++.+.++|+.+||++..-. .....||||||||++|||||+.+|++|+|||
T Consensus 116 ------------------------~~~~~i~~~L~~VgL~~~~l~----R~P~eLSGGQ~QRiaIARAL~~~PklLIlDE 167 (252)
T COG1124 116 ------------------------KSQQRIAELLDQVGLPPSFLD----RRPHELSGGQRQRIAIARALIPEPKLLILDE 167 (252)
T ss_pred ------------------------HHHHHHHHHHHHcCCCHHHHh----cCchhcChhHHHHHHHHHHhccCCCEEEecC
Confidence 001126779999999876553 4556799999999999999999999999999
Q ss_pred CCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 156 ISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 156 PTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|||+||+....+|++.|.++.+. .+.+.+.|.|...-+..+||||+||++|++++.++.+++..
T Consensus 168 ptSaLD~siQa~IlnlL~~l~~~-~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 168 PTSALDVSVQAQILNLLLELKKE-RGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred chhhhcHHHHHHHHHHHHHHHHh-cCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 99999999999999999999875 45567779999999999999999999999999999999864
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-24 Score=234.37 Aligned_cols=184 Identities=21% Similarity=0.238 Sum_probs=119.2
Q ss_pred ceeEeeceEEEEeCCeEEEEEcCCCCcHHHHH-HHHhC--CCC--C--CeEEEEEEECCe-ecChhccc-ceEEEEccCC
Q 000907 685 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLM-DVLAG--RKT--R--GYITGNITISGY-PKNQETFT-RISGYCEQND 755 (1230)
Q Consensus 685 ~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl-~~l~g--~~~--~--~~~~G~i~~~g~-~~~~~~~~-~~~~~v~q~~ 755 (1230)
+..+|+|||+++++||+++|+|+||||||||+ ..+.. ... . ....+. .+... .......+ ...++..|++
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ-FLGQMDKPDVDSIEGLSPAIAIDQK 85 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhh-hhcccCccccccccCCCceEEecCC
Confidence 35699999999999999999999999999995 44431 000 0 000000 00000 00000111 1223333333
Q ss_pred c--cCCCCCHH---HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 000907 756 I--HSPYVTVY---ESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQALVGLPGVNGLSTEQRKRLTIAVELVA 829 (1230)
Q Consensus 756 ~--~~~~ltv~---e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGqrqrl~ia~al~~ 829 (1230)
. ..|..+|. |...+...+. ......++ .+.++.+++.+ ..+.. +..||||||||++||++|+.
T Consensus 86 ~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 86 TTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRS-----APTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCc-----cCcCCHHHHHHHHHHHHHHh
Confidence 2 23444544 2222221111 11112222 46789999875 34544 45799999999999999999
Q ss_pred CC--CEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 830 NP--SIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 830 ~p--~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+| ++++|||||+|||+.++..+.+.|++++++|.|+|++||++.. + +..|+
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~-~-~~~d~ 207 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDT-I-RAADH 207 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHH-H-HhCCE
Confidence 98 5999999999999999999999999987789999999999863 3 56666
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7e-25 Score=252.90 Aligned_cols=176 Identities=25% Similarity=0.354 Sum_probs=143.0
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc------ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSR 74 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~------~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~ 74 (1230)
||+|+|.++. .+|+|+++|.++.... .++.+|||+|++.+++.+||+||+.+.....+. ..
T Consensus 48 lk~L~Gl~~p---~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~----------~~ 114 (343)
T PRK11153 48 IRCINLLERP---TSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGT----------PK 114 (343)
T ss_pred HHHHhCCCCC---CceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCC----------CH
Confidence 4678887653 4799999999886432 246799999999999999999999997653210 00
Q ss_pred HHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeee
Q 000907 75 REKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMD 154 (1230)
Q Consensus 75 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLD 154 (1230)
. +.++.++.+++.+||++..++.++ .|||||||||+|||||+.+|+||+||
T Consensus 115 ~------------------------~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~qRv~lAraL~~~p~iLlLD 165 (343)
T PRK11153 115 A------------------------EIKARVTELLELVGLSDKADRYPA-----QLSGGQKQRVAIARALASNPKVLLCD 165 (343)
T ss_pred H------------------------HHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 0 011236778999999988887664 69999999999999999999999999
Q ss_pred CCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 155 EISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 155 EPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
|||+|||+.++..+++.|+++++..+.|+++ ++|...++.+++|+|++|++|++++.|+++++.
T Consensus 166 EPts~LD~~~~~~l~~~L~~l~~~~g~tiil-vtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 166 EATSALDPATTRSILELLKDINRELGLTIVL-ITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999987644555555 556667889999999999999999999998874
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.3e-25 Score=238.64 Aligned_cols=176 Identities=33% Similarity=0.546 Sum_probs=139.0
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhc
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAK 80 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~ 80 (1230)
||+|+|.++.+...+|+|.++|.++.....++.++||+|++.+++.+||+||+.|++........ ....
T Consensus 50 lk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~-------~~~~---- 118 (226)
T cd03234 50 LDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKS-------SDAI---- 118 (226)
T ss_pred HHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhccccc-------chHH----
Confidence 46778876532235899999999876444567899999999999999999999997653321100 0000
Q ss_pred cCCCchhhHHHHHHHhhccchhhHHHH-HHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 81 IIPDADIDVFMKAVVREGQEANVITDY-ILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~vd~-il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
.....+. +++.+++.+..++.+ +.||||||||++||++|+.+|++++|||||+|
T Consensus 119 --------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~illlDEP~~g 173 (226)
T cd03234 119 --------------------RKKRVEDVLLRDLALTRIGGNLV-----KGISGGERRRVSIAVQLLWDPKVLILDEPTSG 173 (226)
T ss_pred --------------------HHHHHHHHHHHhhcchhhhcccc-----cCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcC
Confidence 0011333 788888877766554 46999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEc
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G 213 (1230)
||+.++..+.+.|+++++ .+.|++++.|++..++.+.+|++++|++|+++++|
T Consensus 174 LD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 174 LDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred CCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999875 46788887777778999999999999999999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-24 Score=208.94 Aligned_cols=188 Identities=24% Similarity=0.318 Sum_probs=156.5
Q ss_pred ceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecCh---hcccceEEEEccCCc--cCC
Q 000907 685 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETFTRISGYCEQNDI--HSP 759 (1230)
Q Consensus 685 ~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~--~~~ 759 (1230)
...+++.|||+++.|+.+||+|.||||||||.|+|+|..+| .+|+|.+||++... ..+.+.+-+++||+. +.|
T Consensus 25 ~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~P--TsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NP 102 (267)
T COG4167 25 TVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP--TSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNP 102 (267)
T ss_pred hhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCC--CCceEEECCccccccchHhhhhheeeeecCCccccCh
Confidence 35689999999999999999999999999999999998775 48999999998643 233467889999985 556
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeC
Q 000907 760 YVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL-RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 838 (1230)
Q Consensus 760 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDE 838 (1230)
.+.+.+-|... +++..+...+.+.+++.+.++..||-+. ++-. +.-||-||||||++||||+.+|+|++.||
T Consensus 103 Rl~iGqiLd~P--L~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~-----~~~la~~QKQRVaLARALIL~P~iIIaDe 175 (267)
T COG4167 103 RLRIGQILDFP--LRLNTDLEPEQRRKQIFETLRMVGLLPDHANYY-----PHMLAPGQKQRVALARALILRPKIIIADE 175 (267)
T ss_pred hhhhhhHhcch--hhhcccCChHHHHHHHHHHHHHhccCccccccc-----hhhcCchhHHHHHHHHHHhcCCcEEEehh
Confidence 66676666654 4555677788888889999999998643 3322 45699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhc
Q 000907 839 PTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 839 PtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
...+||...+.++.+++-++.+ .|.+-|.++.+.. -|-+.-|+
T Consensus 176 Al~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~ 219 (267)
T COG4167 176 ALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQ 219 (267)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-Hhhhhccc
Confidence 9999999999999999989875 4999999998876 45566666
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.1e-25 Score=250.29 Aligned_cols=176 Identities=26% Similarity=0.314 Sum_probs=143.7
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
||+|+|..+ ..+|+|+++|+++.... .++.++||+|++.+++.+||+||+.|+.+.+.. ...
T Consensus 13 l~~iaGl~~---p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~----------~~~---- 75 (325)
T TIGR01187 13 LRLLAGFEQ---PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKV----------PRA---- 75 (325)
T ss_pred HHHHHCCCC---CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCC----------CHH----
Confidence 577888875 34899999999875432 246799999999999999999999998643210 000
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
+.++.++.+++.+||.+..|..+ +.|||||||||+|||||+.+|++++|||||+|
T Consensus 76 --------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~lllLDEP~s~ 130 (325)
T TIGR01187 76 --------------------EIKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKPKILLLDEPLSA 130 (325)
T ss_pred --------------------HHHHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCcc
Confidence 01123677899999988887665 46999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||+.++..+.+.|+++.+..+.|+++ ++|...++..++|+|++|++|++++.|+++++.
T Consensus 131 LD~~~~~~l~~~l~~l~~~~g~tiii-vTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 131 LDKKLRDQMQLELKTIQEQLGITFVF-VTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999987654566655 555667899999999999999999999998874
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-25 Score=284.46 Aligned_cols=176 Identities=24% Similarity=0.307 Sum_probs=132.9
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 77 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~ 77 (1230)
+|+|+|... ..+|+|++||.++++.. .|+.++||+|++.+|+ .||||||.++.. + . .. +.
T Consensus 522 lklL~gl~~---p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~~-~-----~------~~-~~ 584 (710)
T TIGR03796 522 AKLVAGLYQ---PWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWDP-T-----I------PD-AD 584 (710)
T ss_pred HHHHhcCCC---CCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCCC-C-----C------CH-HH
Confidence 356777665 34799999999987643 4789999999988775 699999987521 0 0 00 00
Q ss_pred hhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCC
Q 000907 78 AAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 157 (1230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPT 157 (1230)
+.+.... + ...+.+. .|+++.||.||++| ++||||||||++|||||+++|+|++|||||
T Consensus 585 -------------i~~al~~---~-~l~~~i~---~lp~gl~t~i~e~G-~~LSGGQrQRiaLARall~~p~iliLDEpt 643 (710)
T TIGR03796 585 -------------LVRACKD---A-AIHDVIT---SRPGGYDAELAEGG-ANLSGGQRQRLEIARALVRNPSILILDEAT 643 (710)
T ss_pred -------------HHHHHHH---h-CCHHHHH---hCcCcccceeccCC-CCCCHHHHHHHHHHHHHhhCCCEEEEECcc
Confidence 0000000 0 0112222 38889999999766 579999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 158 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 158 SGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|+||+.++..|.+.|++ .++|+|+..|++ +. ...+|+|++|++|++++.|+++++.+
T Consensus 644 S~LD~~te~~i~~~l~~----~~~T~IiitHrl-~~-i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 644 SALDPETEKIIDDNLRR----RGCTCIIVAHRL-ST-IRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred ccCCHHHHHHHHHHHHh----cCCEEEEEecCH-HH-HHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 99999999999999974 356766655554 44 45689999999999999999999865
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-25 Score=282.23 Aligned_cols=177 Identities=24% Similarity=0.393 Sum_probs=135.4
Q ss_pred ccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 2 LALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 2 ~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
|.|+|... ..+|+|++||.|+++.. .|+.++||+|++.+|+ .||+|||.++..- .+.+ ..
T Consensus 509 klL~gl~~---p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~~~------------~~~~-~i 571 (694)
T TIGR03375 509 KLLLGLYQ---PTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGAPY------------ADDE-EI 571 (694)
T ss_pred HHHhcCCC---CCCceEEECCEEhhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCCCC------------CCHH-HH
Confidence 55666654 35799999999987654 4689999999998776 5999999886320 0000 00
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
.+. . +.+ ...|.+. .|+++.||.||+.| .+||||||||++|||||+++|+|++||||||
T Consensus 572 ------------~~a-~---~~~-~l~~~i~---~lp~gl~T~i~e~G-~~LSgGQrQRlalARall~~p~iliLDE~Ts 630 (694)
T TIGR03375 572 ------------LRA-A---ELA-GVTEFVR---RHPDGLDMQIGERG-RSLSGGQRQAVALARALLRDPPILLLDEPTS 630 (694)
T ss_pred ------------HHH-H---HHc-ChHHHHH---hCcccccceecCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 000 0 000 1123332 38899999999776 5799999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
+||+.++..|++.|+++.+ ++|+++..|++ + ....+|+|++|++|+++++|+|+++.+
T Consensus 631 ~LD~~te~~i~~~l~~~~~--~~T~iiItHrl-~-~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 631 AMDNRSEERFKDRLKRWLA--GKTLVLVTHRT-S-LLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred CCCHHHHHHHHHHHHHHhC--CCEEEEEecCH-H-HHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 9999999999999987753 56776666555 3 457899999999999999999999865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-25 Score=277.94 Aligned_cols=179 Identities=26% Similarity=0.412 Sum_probs=135.4
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 77 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~ 77 (1230)
+|+|+|..++ .+|+|++||.++++.. .++.++||+|++.+|+ .||+|||.++..-. + ... .
T Consensus 386 l~ll~gl~~p---~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~~~-----~------~~~-~ 449 (582)
T PRK11176 386 ANLLTRFYDI---DEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYARTEQ-----Y------SRE-Q 449 (582)
T ss_pred HHHHHhccCC---CCceEEECCEEhhhcCHHHHHhhceEEccCceeec-chHHHHHhcCCCCC-----C------CHH-H
Confidence 3566776543 4799999999987643 3678999999988776 69999998853100 0 000 0
Q ss_pred hhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCC
Q 000907 78 AAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 157 (1230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPT 157 (1230)
+.+....+ -.+..++ .|+++.||.+|+.+ +.||||||||++|||||+++|+|++|||||
T Consensus 450 -------------i~~al~~~-----~l~~~i~--~lp~Gldt~ig~~g-~~LSGGqrQRi~LARall~~~~ililDEpt 508 (582)
T PRK11176 450 -------------IEEAARMA-----YAMDFIN--KMDNGLDTVIGENG-VLLSGGQRQRIAIARALLRDSPILILDEAT 508 (582)
T ss_pred -------------HHHHHHHh-----CcHHHHH--hcccccCceeCCCC-CcCCHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence 00000000 0111222 28899999999765 579999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 158 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 158 SGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|+||+.++..+.+.|+++.+ ++|+|+..|++ +....||+|++|++|++++.|+++++.+
T Consensus 509 saLD~~t~~~i~~~l~~~~~--~~tvI~VtHr~--~~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 509 SALDTESERAIQAALDELQK--NRTSLVIAHRL--STIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred ccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999988643 57777766655 4567799999999999999999999864
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-25 Score=229.73 Aligned_cols=171 Identities=24% Similarity=0.367 Sum_probs=144.2
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-------ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELS 73 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-------~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~ 73 (1230)
+|++||.... .+|.|.+||..+.+.. .+|.+|||.||--|||++||+-||.|+.....
T Consensus 41 in~IaGL~rP---deG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~~------------ 105 (352)
T COG4148 41 INMIAGLTRP---DEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSM------------ 105 (352)
T ss_pred HHHHhccCCc---cccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhcccc------------
Confidence 3677887763 4799999998875432 25899999999999999999999999853210
Q ss_pred HHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeee
Q 000907 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFM 153 (1230)
Q Consensus 74 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlL 153 (1230)
...-|.+...||++|-.+- ....|||||||||+|||||++.|++|+|
T Consensus 106 ----------------------------~~~fd~iv~lLGI~hLL~R-----~P~~LSGGEkQRVAIGRALLt~P~LLLm 152 (352)
T COG4148 106 ----------------------------RAQFDQLVALLGIEHLLDR-----YPGTLSGGEKQRVAIGRALLTAPELLLM 152 (352)
T ss_pred ----------------------------hHhHHHHHHHhCcHHHHhh-----CCCccCcchhhHHHHHHHHhcCCCeeee
Confidence 1125778899999998884 4456999999999999999999999999
Q ss_pred eCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 154 DEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 154 DEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|||.|.||-....+++--|.++++..+-. |+-+.|-..|+..++|+|++|++|+|...|+.+++..
T Consensus 153 DEPLaSLD~~RK~EilpylERL~~e~~IP-IlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 153 DEPLASLDLPRKREILPYLERLRDEINIP-ILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred cCchhhcccchhhHHHHHHHHHHHhcCCC-EEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 99999999999999999999999865544 5557777899999999999999999999999998753
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-25 Score=274.92 Aligned_cols=201 Identities=17% Similarity=0.149 Sum_probs=130.1
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-eEEEEEEECCe
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG-YITGNITISGY 737 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~ 737 (1230)
..|.++|+++++. ++.+|+|+|++|++||++||+|||||||||||++|+|....+ +..|+|.+.++
T Consensus 176 ~~I~i~nls~~y~-------------~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q 242 (718)
T PLN03073 176 KDIHMENFSISVG-------------GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQ 242 (718)
T ss_pred eeEEEceEEEEeC-------------CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEec
Confidence 3588899988773 346999999999999999999999999999999999863111 12355543222
Q ss_pred ec-----Ch------------hcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCC---------------CCCHHHHH
Q 000907 738 PK-----NQ------------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSS---------------EVNSKTRE 785 (1230)
Q Consensus 738 ~~-----~~------------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~---------------~~~~~~~~ 785 (1230)
.. .. ...++.+++++|++.+... ++.++.........+. .......+
T Consensus 243 ~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 321 (718)
T PLN03073 243 EVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAE 321 (718)
T ss_pred cCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHH
Confidence 10 00 0001123444443221110 1101000000000000 00001223
Q ss_pred HHHHHHHHHcCCC-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 000907 786 MFVEEVMELVELN-PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRT 864 (1230)
Q Consensus 786 ~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~t 864 (1230)
+++.++++.+|+. +..++. +..||||||||++||++|+.+|++|||||||++||+.+...+.+.|+++ +.|
T Consensus 322 ~r~~~~L~~lgl~~~~~~~~-----~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~t 393 (718)
T PLN03073 322 ARAASILAGLSFTPEMQVKA-----TKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKT 393 (718)
T ss_pred HHHHHHHHHCCCChHHHhCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCE
Confidence 4566677777775 334444 3479999999999999999999999999999999999999999999875 689
Q ss_pred EEEEecCCCHHHHHHHhc
Q 000907 865 VVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 865 vi~~~H~~~~~i~~~fd~ 882 (1230)
||+++|+.. .+-+..|+
T Consensus 394 viivsHd~~-~l~~~~d~ 410 (718)
T PLN03073 394 FIVVSHARE-FLNTVVTD 410 (718)
T ss_pred EEEEECCHH-HHHHhCCE
Confidence 999999965 34455666
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=252.59 Aligned_cols=176 Identities=22% Similarity=0.290 Sum_probs=142.6
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-------ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELS 73 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-------~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~ 73 (1230)
||+|+|.++ ..+|+|++||.++.... .++.++||+|++.+++.+||+||+.|+.+.++..
T Consensus 71 Lr~I~Gl~~---p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~---------- 137 (400)
T PRK10070 71 VRLLNRLIE---PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGIN---------- 137 (400)
T ss_pred HHHHHcCCC---CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCC----------
Confidence 467777765 34799999999876432 1357999999999999999999999986543210
Q ss_pred HHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeee
Q 000907 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFM 153 (1230)
Q Consensus 74 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlL 153 (1230)
..+ ..+.++++++.+||.+..|..+ +.|||||||||+|||||+.+|+||+|
T Consensus 138 ~~~------------------------~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLL 188 (400)
T PRK10070 138 AEE------------------------RREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLM 188 (400)
T ss_pred HHH------------------------HHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 000 0123677899999988887666 46999999999999999999999999
Q ss_pred eCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 154 DEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 154 DEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||||+|||+.++..+++.|+++.+..++|+|+ ++|..+++..++|+|++|++|++++.|+++++.
T Consensus 189 DEPts~LD~~~r~~l~~~L~~l~~~~g~TIIi-vTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 189 DEAFSALDPLIRTEMQDELVKLQAKHQRTIVF-ISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHHCCCeEEE-EECCHHHHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 99999999999999999999987644566555 556677899999999999999999999988764
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-24 Score=247.70 Aligned_cols=175 Identities=27% Similarity=0.392 Sum_probs=144.5
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc--ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV--PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~--~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
||+|+|.++ ..+|+|.++|.++.... .++.+|||+|++.+++.+||+|||.|.+++.+.. ..
T Consensus 45 l~~l~Gl~~---~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~----------~~--- 108 (301)
T TIGR03522 45 MKIITGYLP---PDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMK----------GQ--- 108 (301)
T ss_pred HHHHhCCCC---CCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCC----------HH---
Confidence 467888765 34899999999875432 3467999999999999999999999877653210 00
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
+..+.++.+++.+||.+..|+.++ .||||||||++||+||+++|++++|||||+
T Consensus 109 ---------------------~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~lliLDEPt~ 162 (301)
T TIGR03522 109 ---------------------LLKQRVEEMIELVGLRPEQHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTT 162 (301)
T ss_pred ---------------------HHHHHHHHHHHHCCCchHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 011236779999999999887764 599999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|||+.+...+++.|+++++ +.| |+.++|..+++.+++|+|++|++|++++.|+.+++.+
T Consensus 163 gLD~~~~~~l~~~l~~~~~--~~t-iii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 163 GLDPNQLVEIRNVIKNIGK--DKT-IILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred cCCHHHHHHHHHHHHHhcC--CCE-EEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999998853 455 5556667789999999999999999999999999865
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-24 Score=251.84 Aligned_cols=170 Identities=24% Similarity=0.379 Sum_probs=141.0
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC-------cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF-------VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELS 73 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~-------~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~ 73 (1230)
||+|+|..+ ..+|+|+++|.++... ..++.++||+|+..+++.+||+||+.|+.+-.
T Consensus 41 l~~iaGl~~---p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~------------- 104 (352)
T PRK11144 41 INAISGLTR---PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKS------------- 104 (352)
T ss_pred HHHHhCCCC---CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhh-------------
Confidence 467888765 3489999999887531 12568999999999999999999999863200
Q ss_pred HHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeee
Q 000907 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFM 153 (1230)
Q Consensus 74 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlL 153 (1230)
.++.++.+++.+||.+..|..++ .|||||||||+|||||+.+|++++|
T Consensus 105 ---------------------------~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qRvalaraL~~~p~llLL 152 (352)
T PRK11144 105 ---------------------------MVAQFDKIVALLGIEPLLDRYPG-----SLSGGEKQRVAIGRALLTAPELLLM 152 (352)
T ss_pred ---------------------------hHHHHHHHHHHcCCchhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 01236778999999988887664 6999999999999999999999999
Q ss_pred eCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 154 DEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 154 DEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||||||||+.++..+++.|+++++..+.|+++ ++|...++..++|+|++|++|+++..|+++++.
T Consensus 153 DEPts~LD~~~~~~l~~~L~~l~~~~g~tii~-vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 153 DEPLASLDLPRKRELLPYLERLAREINIPILY-VSHSLDEILRLADRVVVLEQGKVKAFGPLEEVW 217 (352)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCeEEE-EecCHHHHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 99999999999999999999987644555555 556668999999999999999999999999874
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.6e-25 Score=272.09 Aligned_cols=170 Identities=25% Similarity=0.380 Sum_probs=133.4
Q ss_pred ccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 2 LALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 2 ~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
|.|+|..+ ..+|+|++||.++++.. .|+.++||+|++.+|+ .|++|||.++..- .+.+
T Consensus 384 ~ll~g~~~---p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~~~------------~~~~--- 444 (574)
T PRK11160 384 QLLTRAWD---PQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAAPN------------ASDE--- 444 (574)
T ss_pred HHHhcCCC---CCCceEEECCEEhhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCCCc------------cCHH---
Confidence 55666654 35799999999987654 4678999999988776 5999999986420 0000
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCC------cccccccccCCccccCcccccchhHHHHHHhcCCceee
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDL------DVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALF 152 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL------~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILl 152 (1230)
.++..++..|| +++.||.||+.+ +.||||||||++|||||+++|+|++
T Consensus 445 -------------------------~i~~al~~~~l~~~i~~p~GldT~vge~g-~~LSgGqrqRialARall~~~~ili 498 (574)
T PRK11160 445 -------------------------ALIEVLQQVGLEKLLEDDKGLNAWLGEGG-RQLSGGEQRRLGIARALLHDAPLLL 498 (574)
T ss_pred -------------------------HHHHHHHHcCCHHHHcCccccCchhcCCC-CCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 01112222222 788999999765 4699999999999999999999999
Q ss_pred eeCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 153 MDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 153 LDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
||||||+||+.++..|.+.|+++. .++|+|+..|++ +.+ ..+|+|++|++|++++.|+|+++.+
T Consensus 499 lDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 499 LDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRL-TGL-EQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCh-hHH-HhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999999999875 367777766665 455 5589999999999999999999864
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-24 Score=214.84 Aligned_cols=168 Identities=20% Similarity=0.317 Sum_probs=139.4
Q ss_pred eeEEEEECCccCCCCcc----cceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhccCCCchhhH
Q 000907 14 ASGKVTYNGHDMHEFVP----QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDV 89 (1230)
Q Consensus 14 ~~G~V~vnG~~~~~~~~----~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 89 (1230)
.+|+|.+||.+++..-. |.-+||.|||+..|..|||+|||.-..+.+.... ..
T Consensus 57 d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~--------~~--------------- 113 (243)
T COG1137 57 DSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDL--------KK--------------- 113 (243)
T ss_pred CCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcch--------hH---------------
Confidence 47999999999986532 3579999999999999999999987665432100 00
Q ss_pred HHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcccchHHHHHHH
Q 000907 90 FMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIV 169 (1230)
Q Consensus 90 ~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGLDs~sa~~I~ 169 (1230)
.+.+...|.+|++++|.|++|..-. .||||||||+-|||||+.+|+.++||||.+|+||.+-.+|.
T Consensus 114 ---------~~~~~~l~~LL~ef~i~hlr~~~a~-----sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq 179 (243)
T COG1137 114 ---------AERKEELDALLEEFHITHLRDSKAY-----SLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQ 179 (243)
T ss_pred ---------HHHHHHHHHHHHHhchHHHhcCccc-----ccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHH
Confidence 0112347899999999999997543 59999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 170 NSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 170 ~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
+.++.+++ .|--++| +.|+--|....+||.+++++|++..+|+++++.+
T Consensus 180 ~iI~~L~~-rgiGvLI-TDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 180 RIIKHLKD-RGIGVLI-TDHNVRETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred HHHHHHHh-CCceEEE-ccccHHHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 99999986 3444444 5677789999999999999999999999998753
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-24 Score=247.11 Aligned_cols=176 Identities=26% Similarity=0.334 Sum_probs=142.2
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc--ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV--PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~--~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
||+|+|.++. .+|+|.++|.++.... .++.+|||+|++.+++.+||+||+.+.+...+. ...
T Consensus 47 l~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~----------~~~--- 110 (303)
T TIGR01288 47 ARMLLGMISP---DRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGM----------STR--- 110 (303)
T ss_pred HHHHhCCCCC---CceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCC----------CHH---
Confidence 4678887653 4899999999875322 356799999999999999999999875543210 000
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
+..+.++.+++.+||++..++.++ .||||||||++||+||+.+|++++|||||+
T Consensus 111 ---------------------~~~~~~~~ll~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~ 164 (303)
T TIGR01288 111 ---------------------EIEAVIPSLLEFARLESKADVRVA-----LLSGGMKRRLTLARALINDPQLLILDEPTT 164 (303)
T ss_pred ---------------------HHHHHHHHHHHHCCChhHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 001235678899999999888775 599999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|||+.++..+++.|+++++ .|.|+++ ++|...++.+.+|+|++|++|++++.|+++++..
T Consensus 165 gLD~~~~~~l~~~l~~~~~-~g~til~-~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 165 GLDPHARHLIWERLRSLLA-RGKTILL-TTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEE-ECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999875 4555555 5566679999999999999999999999998754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-24 Score=238.46 Aligned_cols=179 Identities=25% Similarity=0.366 Sum_probs=140.3
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
||+|+|..+ ..+|+|.++|.++.... .++.++||+|++.+++.+||+||+.++........+. ...
T Consensus 45 l~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~------~~~---- 111 (239)
T cd03296 45 LRLIAGLER---PDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERP------PEA---- 111 (239)
T ss_pred HHHHhCCCC---CCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccC------CHH----
Confidence 467888764 35899999999875432 2467999999999999999999999875432100000 000
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
+..+.++.+++.+||.+..++.++ .|||||||||+||+||+.+|++++|||||+|
T Consensus 112 --------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEP~~~ 166 (239)
T cd03296 112 --------------------EIRAKVHELLKLVQLDWLADRYPA-----QLSGGQRQRVALARALAVEPKVLLLDEPFGA 166 (239)
T ss_pred --------------------HHHHHHHHHHHHcCChhhhhcChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 011235678999999887777664 5999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhH
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l 218 (1230)
||+.++..+.+.|+++++..++|+|++. |...++...+|++++|++|++++.|+++++
T Consensus 167 LD~~~~~~l~~~l~~~~~~~~~tvii~s-H~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 167 LDAKVRKELRRWLRRLHDELHVTTVFVT-HDQEEALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEe-CCHHHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 9999999999999998764456666555 555788899999999999999999998876
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-24 Score=289.96 Aligned_cols=173 Identities=27% Similarity=0.324 Sum_probs=131.3
Q ss_pred CceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCeecChhcccceEEEEccCCccCCCCCH
Q 000907 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTV 763 (1230)
Q Consensus 684 ~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv 763 (1230)
+++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++ +.++|++|++.++ ..|+
T Consensus 671 ~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~--~~G~i~~~----------~~i~yv~Q~~~l~-~~Tv 737 (1560)
T PTZ00243 671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEI--SEGRVWAE----------RSIAYVPQQAWIM-NATV 737 (1560)
T ss_pred CCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEEC----------CeEEEEeCCCccC-CCcH
Confidence 346799999999999999999999999999999999998765 37998763 4689999998876 5799
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEeEE
Q 000907 764 YESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 836 (1230)
Q Consensus 764 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~~~~lSgGqrqrl~ia~al~~~p~illl 836 (1230)
+||+.|... ... ++.+++++..++.+ -.++.+|.. ...||||||||++|||||+.+|++++|
T Consensus 738 ~enI~~~~~------~~~----~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~-g~~LSGGQkqRvaLARAl~~~p~illL 806 (1560)
T PTZ00243 738 RGNILFFDE------EDA----ARLADAVRVSQLEADLAQLGGGLETEIGEK-GVNLSGGQKARVSLARAVYANRDVYLL 806 (1560)
T ss_pred HHHHHcCCh------hhH----HHHHHHHHHhhhHHHHHHhhccchHHhcCC-CCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999987421 111 11222333222211 112334443 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 837 DEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 837 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||||++||+.++..+++.+.....+|+|+|++||++.. .+..|+
T Consensus 807 DEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~--~~~ad~ 850 (1560)
T PTZ00243 807 DDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHV--VPRADY 850 (1560)
T ss_pred cCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH--HHhCCE
Confidence 99999999999998887432222358999999999863 355676
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-25 Score=232.50 Aligned_cols=168 Identities=24% Similarity=0.342 Sum_probs=145.7
Q ss_pred ceeEEEEECCccCCCCc-------ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhccCCCc
Q 000907 13 KASGKVTYNGHDMHEFV-------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDA 85 (1230)
Q Consensus 13 ~~~G~V~vnG~~~~~~~-------~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~~~~~~ 85 (1230)
-..|+|+++|.++.... .++.++.|.|.-.|+|+.||.||..|+.++++.. +.|+
T Consensus 80 pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~----------~~er-------- 141 (386)
T COG4175 80 PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVP----------KAER-------- 141 (386)
T ss_pred CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCC----------HHHH--------
Confidence 46899999999986543 2478999999999999999999999999887632 2222
Q ss_pred hhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcccchHHH
Q 000907 86 DIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTT 165 (1230)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGLDs~sa 165 (1230)
+++..+.|+..||..-++... ..||||+||||-+||||..+|+||++|||.|+|||--+
T Consensus 142 ----------------~~~a~~~l~~VgL~~~~~~yp-----~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR 200 (386)
T COG4175 142 ----------------EERALEALELVGLEGYADKYP-----NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIR 200 (386)
T ss_pred ----------------HHHHHHHHHHcCchhhhhcCc-----ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHH
Confidence 224567899999999998655 56999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 166 FHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 166 ~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
.++++-|.++.+..++| |+.|+|..+|.+...|||.+|.+|+++..|+++|++.
T Consensus 201 ~~mQdeLl~Lq~~l~KT-IvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 201 TEMQDELLELQAKLKKT-IVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred HHHHHHHHHHHHHhCCe-EEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHc
Confidence 99999999998877666 5558899999999999999999999999999999864
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-24 Score=241.90 Aligned_cols=176 Identities=24% Similarity=0.332 Sum_probs=141.4
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-------ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELS 73 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-------~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~ 73 (1230)
||+|+|.++. .+|+|.++|.++.... .++.++||+|++.+++.+||+||+.+.....+. .
T Consensus 67 l~~L~Gl~~p---~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~----------~ 133 (269)
T cd03294 67 LRCINRLIEP---TSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGV----------P 133 (269)
T ss_pred HHHHhcCCCC---CCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCC----------C
Confidence 4678887753 4799999999875421 135799999999999999999999987543210 0
Q ss_pred HHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeee
Q 000907 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFM 153 (1230)
Q Consensus 74 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlL 153 (1230)
..+ ..+.++.+++.+||.+..++.++ .||||||||++||+||+.+|+|++|
T Consensus 134 ~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 134 RAE------------------------REERAAEALELVGLEGWEHKYPD-----ELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred HHH------------------------HHHHHHHHHHHcCCHhHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 000 01235778999999988888775 5999999999999999999999999
Q ss_pred eCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 154 DEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 154 DEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||||+|||..++..+.+.|+++++..++|+++ ++|...++...+|++++|++|++++.|+++++.
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii-~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVF-ITHDLDEALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999987644566555 555567889999999999999999999988764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.3e-25 Score=232.34 Aligned_cols=160 Identities=19% Similarity=0.243 Sum_probs=121.8
Q ss_pred eceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-------eEEEEEEECCeecChhcccceEEEEccCCccCCCCC
Q 000907 690 NGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRG-------YITGNITISGYPKNQETFTRISGYCEQNDIHSPYVT 762 (1230)
Q Consensus 690 ~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~-------~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lt 762 (1230)
+++++++++| +++|+||||||||||+++|+|...+. ...|++.++|.+......++.++|++|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 99999999999999999999864321 12356777776654333457899999988765
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCHHHHHHHHHHHHHh----hCCCEeEEeC
Q 000907 763 VYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELV----ANPSIIFMDE 838 (1230)
Q Consensus 763 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqrl~ia~al~----~~p~illlDE 838 (1230)
|. .. . .++++++++. .+..++. +..||||||||++||++|+ .+|++++|||
T Consensus 89 ------~~--~~-----~----~~~~~~~l~~---~~~~~~~-----~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YS--II-----S----QGDVSEIIEA---PGKKVQR-----LSLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------ee--EE-----e----hhhHHHHHhC---CCccccc-----hhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 11 00 0 1235666665 3334443 3579999999999999997 4669999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 839 PTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 839 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
||+|||+.....+.+.|+++++ +.|||++||++.. .+..|+
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~~--~~~~d~ 184 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKGT--MEAADR 184 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHH--Hhhcce
Confidence 9999999999999999999864 7899999999852 345565
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-24 Score=235.90 Aligned_cols=175 Identities=29% Similarity=0.353 Sum_probs=140.5
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC--cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF--VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~--~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
||+|+|.++ ..+|+|.+||.++... ..++.++||+|++.+++.+||+||+.+..+..+. ...
T Consensus 43 l~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~----------~~~--- 106 (220)
T cd03265 43 IKMLTTLLK---PTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGV----------PGA--- 106 (220)
T ss_pred HHHHhCCCC---CCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCC----------CHH---
Confidence 467888764 3489999999886532 2246799999999999999999999987543210 000
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
+..+.++.+++.+||++..|+.++ .||||||||++||+||+.+|++++|||||+
T Consensus 107 ---------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr~~la~al~~~p~llllDEPt~ 160 (220)
T cd03265 107 ---------------------ERRERIDELLDFVGLLEAADRLVK-----TYSGGMRRRLEIARSLVHRPEVLFLDEPTI 160 (220)
T ss_pred ---------------------HHHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 011236778999999988887765 599999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhH
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l 218 (1230)
|||+.++..+.+.|+++++..+.+++ .++|...++...+|++++|.+|++++.|+++++
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~~~tvi-~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 161 GLDPQTRAHVWEYIEKLKEEFGMTIL-LTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEE-EEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999998764355544 566667789999999999999999999987753
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.6e-25 Score=245.79 Aligned_cols=173 Identities=27% Similarity=0.401 Sum_probs=139.2
Q ss_pred ceeEEEEECCccCCCCcc---cceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhccCCCchhhH
Q 000907 13 KASGKVTYNGHDMHEFVP---QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDV 89 (1230)
Q Consensus 13 ~~~G~V~vnG~~~~~~~~---~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 89 (1230)
..+|.|.+||.+++..+. -+.+||.||+=.||+ .||.|||. |+.. +.|.++
T Consensus 388 p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIa---Rf~~----------------------~~d~~k 441 (580)
T COG4618 388 PTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIA---RFGE----------------------EADPEK 441 (580)
T ss_pred cCCCcEEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHH---hccc----------------------cCCHHH
Confidence 468999999999986543 378999999777776 69999994 4321 111111
Q ss_pred HHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcccchHHHHHHH
Q 000907 90 FMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIV 169 (1230)
Q Consensus 90 ~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGLDs~sa~~I~ 169 (1230)
..++.+....+|.|++ |++++||.||+.+ .+||||||||+++||||+++|.+++||||-|.||+.-+..+.
T Consensus 442 -----IieAA~lAgvHelIl~---lP~GYdT~iG~~G-~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~ 512 (580)
T COG4618 442 -----VIEAARLAGVHELILR---LPQGYDTRIGEGG-ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALA 512 (580)
T ss_pred -----HHHHHHHcChHHHHHh---CcCCccCccCCCC-CCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHH
Confidence 1222333446777766 9999999999765 579999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHHHHH
Q 000907 170 NSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFI 223 (1230)
Q Consensus 170 ~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~~f~ 223 (1230)
+++.+..+ .|+|+|+..|.| .+....|+|++|++|++.-+|+.+|+.....
T Consensus 513 ~Ai~~~k~-rG~~vvviaHRP--s~L~~~Dkilvl~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 513 AAILAAKA-RGGTVVVIAHRP--SALASVDKILVLQDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred HHHHHHHH-cCCEEEEEecCH--HHHhhcceeeeecCChHHhcCCHHHHHHHhc
Confidence 99998764 677777665554 5888889999999999999999999987653
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-25 Score=279.37 Aligned_cols=175 Identities=22% Similarity=0.364 Sum_probs=128.9
Q ss_pred ccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 2 LALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 2 ~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
|.|+|..+ ..+|+|++||.|+++.. .++.++||+|++.+|. .||||||.++..-. + .+.
T Consensus 525 ~lL~gl~~---p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~~~~------------~-~e~- 586 (711)
T TIGR00958 525 ALLQNLYQ---PTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGLTDT------------P-DEE- 586 (711)
T ss_pred HHHHhccC---CCCCEEEECCEEHHhcCHHHHHhhceEEecCccccc-cCHHHHHhcCCCCC------------C-HHH-
Confidence 45566554 35799999999987654 4678999999988776 69999999863200 0 000
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
+.+....+ . ..+.+- .|+++.||.+|+.+ ++||||||||++|||||+++|+|++||||||
T Consensus 587 ------------i~~al~~a---~-l~~~i~---~lp~GldT~ige~G-~~LSGGQkQRlalARALl~~p~ILILDEpTS 646 (711)
T TIGR00958 587 ------------IMAAAKAA---N-AHDFIM---EFPNGYDTEVGEKG-SQLSGGQKQRIAIARALVRKPRVLILDEATS 646 (711)
T ss_pred ------------HHHHHHHc---C-CHHHHH---hCCCccCCcccCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEEcccc
Confidence 01111000 0 112222 27889999999765 5799999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
+||+.++..|.+ .. ...++|+|+..|+ .+. .+.+|+|++|++|+++++|+|+++.+
T Consensus 647 aLD~~te~~i~~-~~---~~~~~TvIiItHr-l~~-i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 647 ALDAECEQLLQE-SR---SRASRTVLLIAHR-LST-VERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred ccCHHHHHHHHH-hh---ccCCCeEEEEecc-HHH-HHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 999999999988 22 1235666655544 444 56689999999999999999999865
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-25 Score=280.20 Aligned_cols=177 Identities=26% Similarity=0.373 Sum_probs=133.4
Q ss_pred ccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 2 LALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 2 ~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
|.|+|... -.+|+|++||.++++.. .|+.+|||+|++.+|+ .||+|||.++.+-. .+.++
T Consensus 518 klL~gl~~---p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~l~~~~~-----------~~~~~-- 580 (708)
T TIGR01193 518 KLLVGFFQ---ARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFS-GSILENLLLGAKEN-----------VSQDE-- 580 (708)
T ss_pred HHHhccCC---CCCcEEEECCEEHHHcCHHHHHHheEEEecCceehh-HHHHHHHhccCCCC-----------CCHHH--
Confidence 55666654 35799999999987543 4688999999988776 59999999863210 00000
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
+.+.. +.+ ...|.+. .|+++.||.||+.+ .+||||||||++|||||+++|+||+||||||
T Consensus 581 ------------i~~a~---~~a-~l~~~i~---~lp~gldt~i~e~G-~~LSgGQrQRialARall~~p~iliLDE~Ts 640 (708)
T TIGR01193 581 ------------IWAAC---EIA-EIKDDIE---NMPLGYQTELSEEG-SSISGGQKQRIALARALLTDSKVLILDESTS 640 (708)
T ss_pred ------------HHHHH---HHh-CCHHHHH---hcccccCcEecCCC-CCCCHHHHHHHHHHHHHhhCCCEEEEeCccc
Confidence 00000 000 1122232 38899999999765 5799999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
+||+.++..|++.|+++ .++|+|+..|++ + ....+|+|++|++|++++.|+++++.+
T Consensus 641 ~LD~~te~~i~~~L~~~---~~~T~IiitHr~-~-~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 641 NLDTITEKKIVNNLLNL---QDKTIIFVAHRL-S-VAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred cCCHHHHHHHHHHHHHh---cCCEEEEEecch-H-HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999864 356666655554 4 457799999999999999999999865
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-24 Score=236.49 Aligned_cols=174 Identities=20% Similarity=0.348 Sum_probs=139.3
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc----ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV----PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRRE 76 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~----~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e 76 (1230)
||+|+|.++ ..+|+|.+||.+..... .++.++||+|++.+++.+||+||+.+....+.. ...
T Consensus 43 l~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~----------~~~- 108 (232)
T cd03218 43 FYMIVGLVK---PDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGL----------SKK- 108 (232)
T ss_pred HHHHhCCCC---CCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcCC----------CHH-
Confidence 467888765 34799999999875422 135699999999999999999999986532210 000
Q ss_pred HhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCC
Q 000907 77 KAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEI 156 (1230)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEP 156 (1230)
+..+.++.+++.+||.+..++.++ .||||||||++||+||+.+|++++||||
T Consensus 109 -----------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEP 160 (232)
T cd03218 109 -----------------------EREEKLEELLEEFHITHLRKSKAS-----SLSGGERRRVEIARALATNPKFLLLDEP 160 (232)
T ss_pred -----------------------HHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 011235778999999888887664 6999999999999999999999999999
Q ss_pred CcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhH
Q 000907 157 STGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218 (1230)
Q Consensus 157 TSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l 218 (1230)
|+|||+.++..+.+.|+++++ .+.|+++ ++|...++.+.+|++++|++|++++.|+.+++
T Consensus 161 t~~LD~~~~~~~~~~l~~~~~-~~~tii~-~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 161 FAGVDPIAVQDIQKIIKILKD-RGIGVLI-TDHNVRETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred cccCCHHHHHHHHHHHHHHHH-CCCEEEE-EeCCHHHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 999999999999999998875 4555555 55556789999999999999999999998775
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-24 Score=237.15 Aligned_cols=184 Identities=22% Similarity=0.310 Sum_probs=140.9
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcc----cceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVP----QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRRE 76 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~----~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e 76 (1230)
|++|+|.++ ..+|+|.++|.++..... ++.++||+|++.+++.+||+||+.++..........+ ..
T Consensus 43 l~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~----~~--- 112 (236)
T cd03219 43 FNLISGFLR---PTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLL----AR--- 112 (236)
T ss_pred HHHHcCCCC---CCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcccccccc----cc---
Confidence 467888765 347999999998764321 3469999999999999999999998764321000000 00
Q ss_pred HhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCC
Q 000907 77 KAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEI 156 (1230)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEP 156 (1230)
...+ .++..+.++++++.+||++..|+.++ .|||||||||+||+||+.+|++++||||
T Consensus 113 ------~~~~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~llllDEP 170 (236)
T cd03219 113 ------ARRE-----------EREARERAEELLERVGLADLADRPAG-----ELSYGQQRRLEIARALATDPKLLLLDEP 170 (236)
T ss_pred ------cccc-----------HHHHHHHHHHHHHHcCccchhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 0000 00112246788999999887776654 6999999999999999999999999999
Q ss_pred CcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhH
Q 000907 157 STGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218 (1230)
Q Consensus 157 TSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l 218 (1230)
|+|||..++..+++.|+++++ .++|+|+ ++|...++.+.+|++++|++|++++.|+++++
T Consensus 171 t~~LD~~~~~~l~~~l~~~~~-~~~tii~-vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 171 AAGLNPEETEELAELIRELRE-RGITVLL-VEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred cccCCHHHHHHHHHHHHHHHH-CCCEEEE-EecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 999999999999999999875 4566555 55566788899999999999999999998876
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-24 Score=233.63 Aligned_cols=170 Identities=24% Similarity=0.358 Sum_probs=135.4
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
|++|+|.++ ..+|+|.++|.++.... .++.++||+|++.+++.+||+||+.++...... ...+
T Consensus 43 l~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~----------~~~~--- 106 (213)
T cd03259 43 LRLIAGLER---PDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGV----------PKAE--- 106 (213)
T ss_pred HHHHhCCCC---CCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCC----------CHHH---
Confidence 467888765 34899999999875422 246799999999999999999999986542110 0000
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
.++.++.+++.+||.+..++.++ .||||||||++||+||+.+|++++|||||+|
T Consensus 107 ---------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~la~al~~~p~~lllDEPt~~ 160 (213)
T cd03259 107 ---------------------IRARVRELLELVGLEGLLNRYPH-----ELSGGQQQRVALARALAREPSLLLLDEPLSA 160 (213)
T ss_pred ---------------------HHHHHHHHHHHcCChhhhhcChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 01235678999999988887664 5999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEc
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G 213 (1230)
||+.++..+++.|+++++..++|+++ ++|...++.+.+|++++|++|++++.|
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tii~-~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 161 LDAKLREELREELKELQRELGITTIY-VTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEE-EecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999987544555555 556667889999999999999999876
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-24 Score=249.11 Aligned_cols=174 Identities=22% Similarity=0.414 Sum_probs=141.7
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC-------cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF-------VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELS 73 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~-------~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~ 73 (1230)
||+|+|..+ ..+|+|.++|.++... ..++.++||+|++.+++.+||+||+.|+.+...
T Consensus 40 l~~iaGl~~---p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~------------ 104 (354)
T TIGR02142 40 IRLIAGLTR---PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRAR------------ 104 (354)
T ss_pred HHHHhCCCC---CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhccC------------
Confidence 467888765 3479999999987532 124679999999999999999999998753210
Q ss_pred HHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeee
Q 000907 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFM 153 (1230)
Q Consensus 74 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlL 153 (1230)
..+ .++.++++++.+||.+..|..++ .|||||||||+|||||+.+|++|+|
T Consensus 105 ~~~------------------------~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGqkqRvalAraL~~~p~lllL 155 (354)
T TIGR02142 105 PSE------------------------RRISFERVIELLGIGHLLGRLPG-----RLSGGEKQRVAIGRALLSSPRLLLM 155 (354)
T ss_pred hhH------------------------HHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 000 01236778999999988887664 6999999999999999999999999
Q ss_pred eCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 154 DEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 154 DEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||||+|||+.++..+++.|+++++..+.|+++ ++|...++..++|+|++|++|++++.|+++++.
T Consensus 156 DEPts~LD~~~~~~l~~~L~~l~~~~g~tiii-vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 156 DEPLAALDDPRKYEILPYLERLHAEFGIPILY-VSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred cCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEE-EecCHHHHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 99999999999999999999987644556555 555667899999999999999999999998874
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-24 Score=247.46 Aligned_cols=176 Identities=24% Similarity=0.300 Sum_probs=141.7
Q ss_pred CccccCCcCCCCceeEEEEECCc----cCCCCc------c-cceEEEecccccccCCCCHHHHHHHHhhccCCCCccchh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGH----DMHEFV------P-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDML 69 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~----~~~~~~------~-~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~ 69 (1230)
|++|+|.++ ..+|+|+++|. ++.... . ++.++||+|+..+++.+||+||+.|+....+.
T Consensus 67 lr~L~Gl~~---p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~------- 136 (382)
T TIGR03415 67 LRAVNGLNP---VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGM------- 136 (382)
T ss_pred HHHHhCCCC---CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCC-------
Confidence 467888765 35799999996 332211 1 25799999999999999999999998653321
Q ss_pred hhhhHHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCc
Q 000907 70 VELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAH 149 (1230)
Q Consensus 70 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ 149 (1230)
...+ .++.++++++.+||++..|..++ .|||||||||+|||||+.+|+
T Consensus 137 ---~~~~------------------------~~~~a~e~le~vgL~~~~~~~~~-----~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 137 ---PEAE------------------------RRKRVDEQLELVGLAQWADKKPG-----ELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred ---CHHH------------------------HHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCC
Confidence 0000 11236778999999988887664 599999999999999999999
Q ss_pred eeeeeCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 150 ALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 150 ILlLDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||+|||||||||+.++.++++.|+++.+..++|+++ ++|..+++..++|+|++|++|+++..|+++++.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~-iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIF-VSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999987644555555 566678999999999999999999999998874
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-24 Score=232.43 Aligned_cols=170 Identities=25% Similarity=0.386 Sum_probs=136.5
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
||+|+|.++ ..+|+|.++|.++.... .++.++||+|++.+++.+||+||+.++.+.... ...
T Consensus 43 l~~l~G~~~---~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~----------~~~---- 105 (213)
T cd03301 43 LRMIAGLEE---PTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKV----------PKD---- 105 (213)
T ss_pred HHHHhCCCC---CCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCC----------CHH----
Confidence 467888764 34899999999875432 245799999999999999999999987543210 000
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
+..+.++.+++.+||.+..+..++ .||||||||++||++|+.+|++++|||||+|
T Consensus 106 --------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr~~laral~~~p~llllDEPt~~ 160 (213)
T cd03301 106 --------------------EIDERVREVAELLQIEHLLDRKPK-----QLSGGQRQRVALGRAIVREPKVFLMDEPLSN 160 (213)
T ss_pred --------------------HHHHHHHHHHHHcCCHHHHhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 011236778999999988887664 5999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEc
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G 213 (1230)
||+.++..+++.|+++++..+.|++++. |...++.+.+|+|++|++|++++.|
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tvi~~s-H~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 161 LDAKLRVQMRAELKRLQQRLGTTTIYVT-HDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEe-CCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999998764466666655 4457888999999999999999886
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-24 Score=236.26 Aligned_cols=175 Identities=27% Similarity=0.361 Sum_probs=140.4
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc------ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSR 74 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~------~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~ 74 (1230)
||+|+|.++. .+|+|.++|+++.... .++.++||+|++.+++.+||+||+.+....+.. ..
T Consensus 48 l~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~----------~~ 114 (233)
T cd03258 48 IRCINGLERP---TSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGV----------PK 114 (233)
T ss_pred HHHHhCCCCC---CCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCC----------CH
Confidence 4678888753 5799999999876431 246799999999999999999999987543210 00
Q ss_pred HHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeee
Q 000907 75 REKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMD 154 (1230)
Q Consensus 75 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLD 154 (1230)
. .....++.+++.+||++..+..+ +.||||||||++||++|+.+|++++||
T Consensus 115 ~------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLD 165 (233)
T cd03258 115 A------------------------EIEERVLELLELVGLEDKADAYP-----AQLSGGQKQRVGIARALANNPKVLLCD 165 (233)
T ss_pred H------------------------HHHHHHHHHHHHCCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 0 00123577899999988877655 469999999999999999999999999
Q ss_pred CCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhH
Q 000907 155 EISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218 (1230)
Q Consensus 155 EPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l 218 (1230)
|||+|||+.++..+.+.|+++++..+.|++++. |...++...+|++++|++|++++.|+.+++
T Consensus 166 EP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~s-H~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 166 EATSALDPETTQSILALLRDINRELGLTIVLIT-HEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999998764455655544 556788899999999999999999998775
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-24 Score=241.21 Aligned_cols=176 Identities=25% Similarity=0.363 Sum_probs=137.7
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC-----cccceEEEeccccc-ccCCCCHHHHHHHHhhccCCCCccchhhhhhH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF-----VPQRTAAYISQHDI-HIGEMTVRETLAFSARCQGVGSRYDMLVELSR 74 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~-----~~~~~~~yV~Q~d~-l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~ 74 (1230)
|++|+|.+.. .+|+|+++|.++... ..++.+|||+|++. .+...||+||+.|+....+. ..
T Consensus 50 l~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~----------~~ 116 (287)
T PRK13637 50 IQHLNGLLKP---TSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGL----------SE 116 (287)
T ss_pred HHHHhcCCCC---CccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCCC----------CH
Confidence 4677777653 489999999998642 23468999999862 34457999999986542210 00
Q ss_pred HHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCc--ccccccccCCccccCcccccchhHHHHHHhcCCceee
Q 000907 75 REKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD--VCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALF 152 (1230)
Q Consensus 75 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~--~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILl 152 (1230)
++..+.++.+++.+||. +..|+.+ +.||||||||++||+||+.+|+||+
T Consensus 117 ------------------------~~~~~~~~~~l~~~gL~~~~~~~~~~-----~~LSgGq~qrv~iAraL~~~P~lll 167 (287)
T PRK13637 117 ------------------------EEIENRVKRAMNIVGLDYEDYKDKSP-----FELSGGQKRRVAIAGVVAMEPKILI 167 (287)
T ss_pred ------------------------HHHHHHHHHHHHHcCCCchhhccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 01122467899999997 5566554 4699999999999999999999999
Q ss_pred eeCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 153 MDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 153 LDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
|||||+|||+.++..+++.|+++++..+.|+++ ++|...++...+|+|++|++|++++.|+.+++.
T Consensus 168 lDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~-vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 168 LDEPTAGLDPKGRDEILNKIKELHKEYNMTIIL-VSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred EECCccCCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999987644555555 556677888999999999999999999998874
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-24 Score=233.33 Aligned_cols=171 Identities=25% Similarity=0.342 Sum_probs=137.3
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhc
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAK 80 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~ 80 (1230)
||+|+|.++ ..+|+|.++|.++.. .++.++||+|++.+++.+||+||+.++...++. ...+
T Consensus 47 l~~l~Gl~~---~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~----------~~~~---- 107 (220)
T cd03293 47 LRIIAGLER---PTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQGV----------PKAE---- 107 (220)
T ss_pred HHHHhCCCC---CCceEEEECCEECcc--ccCcEEEEecccccccCCCHHHHHHHHHHHcCC----------CHHH----
Confidence 467888764 348999999998753 356799999999999999999999987543210 0000
Q ss_pred cCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCccc
Q 000907 81 IIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGL 160 (1230)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGL 160 (1230)
..+.++.+++.+||.+..+..++ .||||||||++||+||+.+|++++|||||+||
T Consensus 108 --------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~la~al~~~p~lllLDEPt~~L 162 (220)
T cd03293 108 --------------------ARERAEELLELVGLSGFENAYPH-----QLSGGMRQRVALARALAVDPDVLLLDEPFSAL 162 (220)
T ss_pred --------------------HHHHHHHHHHHcCChhhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEECCCCCCC
Confidence 01236778999999887777664 59999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEec--CCeEEEEcChh
Q 000907 161 DSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVS--DGQIVYQGPLE 216 (1230)
Q Consensus 161 Ds~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~--~G~vv~~G~~~ 216 (1230)
|+.++..+++.|+++.+..++|+++ ++|...++...+|++++|+ +|++++.++++
T Consensus 163 D~~~~~~~~~~l~~~~~~~~~tiii-~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 163 DALTREQLQEELLDIWRETGKTVLL-VTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEE-EecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999886544566555 4555678889999999999 79999998865
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-24 Score=236.23 Aligned_cols=177 Identities=20% Similarity=0.292 Sum_probs=136.7
Q ss_pred CccccCCcCC--CCceeEEEEECCccCCCCc-----ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhh
Q 000907 1 MLALAGKLDS--SLKASGKVTYNGHDMHEFV-----PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELS 73 (1230)
Q Consensus 1 l~~Lag~~~~--~~~~~G~V~vnG~~~~~~~-----~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~ 73 (1230)
||+|+|...+ ....+|+|+++|.++.... .++.++||+|++.++ .+||+||+.++....+.. .
T Consensus 43 l~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~---------~ 112 (227)
T cd03260 43 LRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIK---------L 112 (227)
T ss_pred HHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCC---------c
Confidence 4678887621 0145899999999875422 246799999998888 799999999875432100 0
Q ss_pred HHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeee
Q 000907 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFM 153 (1230)
Q Consensus 74 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlL 153 (1230)
.. +..+.++.+++.+||.+..+..+. .+.||||||||++||+||+.+|++++|
T Consensus 113 ~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~llll 165 (227)
T cd03260 113 KE------------------------ELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEVLLL 165 (227)
T ss_pred HH------------------------HHHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 00 001235678999999887766531 246999999999999999999999999
Q ss_pred eCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhh
Q 000907 154 DEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEH 217 (1230)
Q Consensus 154 DEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~ 217 (1230)
||||+|||+.++..+++.|+++++ . .| ++.++|...++...+|++++|++|++++.|++++
T Consensus 166 DEPt~~LD~~~~~~l~~~l~~~~~-~-~t-ii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 166 DEPTSALDPISTAKIEELIAELKK-E-YT-IVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred eCCCccCCHHHHHHHHHHHHHHhh-C-cE-EEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999875 2 45 4445566678899999999999999999998765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-24 Score=236.81 Aligned_cols=184 Identities=23% Similarity=0.299 Sum_probs=140.1
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc------ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSR 74 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~------~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~ 74 (1230)
||+|+|.++ ..+|+|++||.++.... .++.++||+|++.+++.+||+||+.++..... ...+......
T Consensus 44 l~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~- 117 (241)
T cd03256 44 LRCLNGLVE---PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRR--STWRSLFGLF- 117 (241)
T ss_pred HHHHhCCcC---CCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccc--hhhhhhcccC-
Confidence 467888765 34799999999876432 24679999999999999999999987642100 0000000000
Q ss_pred HHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeee
Q 000907 75 REKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMD 154 (1230)
Q Consensus 75 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLD 154 (1230)
.+...+.++.+++.+||.+..++.+ +.|||||||||+||+||+.+|+|++||
T Consensus 118 -----------------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllD 169 (241)
T cd03256 118 -----------------------PKEEKQRALAALERVGLLDKAYQRA-----DQLSGGQQQRVAIARALMQQPKLILAD 169 (241)
T ss_pred -----------------------cHHHHHHHHHHHHHcCChhhhCCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 0001123567899999988777655 469999999999999999999999999
Q ss_pred CCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 155 EISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 155 EPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
|||+|||+.+...+.+.|+++++..++|+++ ++|..+++...+|++++|++|++++.|+.+++.
T Consensus 170 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~-~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 170 EPVASLDPASSRQVMDLLKRINREEGITVIV-SLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred CccccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 9999999999999999999987644556555 556667888999999999999999999988763
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-24 Score=244.25 Aligned_cols=183 Identities=22% Similarity=0.266 Sum_probs=143.0
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcc------c-ceEEEecccc--cccCCCCHHHHHHHHhhccCCCCccchhhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVP------Q-RTAAYISQHD--IHIGEMTVRETLAFSARCQGVGSRYDMLVE 71 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~------~-~~~~yV~Q~d--~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~ 71 (1230)
+++|+|.++.....+|+|.++|.++..... + +.++||+|++ .+.+.+||.|++.+.......
T Consensus 59 ~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~--------- 129 (330)
T PRK09473 59 AFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKG--------- 129 (330)
T ss_pred HHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcC---------
Confidence 467888876432358999999999864321 2 4799999997 688999999999876433210
Q ss_pred hhHHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCcee
Q 000907 72 LSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHAL 151 (1230)
Q Consensus 72 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~IL 151 (1230)
.... +..+.+..+++.+||++..++ ++ ...+.|||||||||+||+||+.+|+++
T Consensus 130 ~~~~------------------------~~~~~~~~~L~~vgL~~~~~~-~~-~~p~~LSgG~~QRv~IArAL~~~P~ll 183 (330)
T PRK09473 130 MSKA------------------------EAFEESVRMLDAVKMPEARKR-MK-MYPHEFSGGMRQRVMIAMALLCRPKLL 183 (330)
T ss_pred CCHH------------------------HHHHHHHHHHHHcCCCChHHH-hc-CCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 0000 111246778999999865433 32 455789999999999999999999999
Q ss_pred eeeCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 152 FMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 152 lLDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
++||||||||..++.+|++.|+++.+..+. +++.|+|....+...+|+|++|++|++++.|+.+++.
T Consensus 184 ilDEPts~LD~~~~~~i~~lL~~l~~~~g~-til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 184 IADEPTTALDVTVQAQIMTLLNELKREFNT-AIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVF 250 (330)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHHcCC-EEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999764444 5555777778899999999999999999999998874
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.5e-24 Score=269.02 Aligned_cols=187 Identities=24% Similarity=0.387 Sum_probs=152.0
Q ss_pred ceeEEeeeEEEEecCcccccccccCCceeEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeEEEEEEECCee
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..++++|.+++.+.. +....|+|||++|++|+++||+|+-|||||+||.+|.|..+ ..+|++.++|.
T Consensus 517 ~~i~i~~~sfsW~~~----------~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~--~~sG~v~v~gs- 583 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDSE----------SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP--KLSGSVAVNGS- 583 (1381)
T ss_pred ceEEEeeeeEecCCC----------CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc--cccceEEEcCe-
Confidence 358888988876421 22348999999999999999999999999999999999766 36899999984
Q ss_pred cChhcccceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCCCC
Q 000907 739 KNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGLPGVN 811 (1230)
Q Consensus 739 ~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~~~ 811 (1230)
++||+|.+.++. .|||||+.|+.. . .+++-+++++...|.+ ...|.+|+.|+
T Consensus 584 ---------iaYv~Q~pWI~n-gTvreNILFG~~------~----d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi- 642 (1381)
T KOG0054|consen 584 ---------VAYVPQQPWIQN-GTVRENILFGSP------Y----DEERYDKVIKACALKKDLEILPFGDLTEIGERGI- 642 (1381)
T ss_pred ---------EEEeccccHhhC-CcHHHhhhcCcc------c----cHHHHHHHHHHccCHhHHhhcCCCCcceecCCcc-
Confidence 799999998765 699999999632 1 2345677888777654 33466776665
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEeEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCCHHHHHHHhc
Q 000907 812 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMR-TVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 812 ~lSgGqrqrl~ia~al~~~p~illlDEPtsgLD~~~~~~i~~-~l~~~~~~g~tvi~~~H~~~~~i~~~fd~ 882 (1230)
+||||||||+++|||+-+|.+|.+||.|.|++|++..+.+.+ .++.+ -+++|+|++|||. +.....|.
T Consensus 643 nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~-L~~KT~ILVTHql--~~L~~ad~ 711 (1381)
T KOG0054|consen 643 NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGL-LRGKTVILVTHQL--QFLPHADQ 711 (1381)
T ss_pred CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhh-hcCCEEEEEeCch--hhhhhCCE
Confidence 599999999999999999999999999999999999999886 55333 4689999999965 45566776
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-24 Score=244.10 Aligned_cols=178 Identities=23% Similarity=0.260 Sum_probs=141.1
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc------ccceEEEecccc--cccCCCCHHHHHHHHhhccCCCCccchhhhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHD--IHIGEMTVRETLAFSARCQGVGSRYDMLVEL 72 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~------~~~~~~yV~Q~d--~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~ 72 (1230)
+++|+|.+.. .+|+|+++|.++.+.. .++.++||+|++ .++|.+||+||+.+..+..... .
T Consensus 64 lk~i~Gl~~p---~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~--------~ 132 (331)
T PRK15079 64 ARAIIGLVKA---TDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPK--------L 132 (331)
T ss_pred HHHHHCCCCC---CCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccC--------C
Confidence 4678887753 4899999999986432 246799999997 6889999999999865421100 0
Q ss_pred hHHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCc-ccccccccCCccccCcccccchhHHHHHHhcCCcee
Q 000907 73 SRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD-VCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHAL 151 (1230)
Q Consensus 73 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~-~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~IL 151 (1230)
... +.++.++++++.+||. +..++.. ..|||||||||+||+||+.+|++|
T Consensus 133 ~~~------------------------~~~~~~~~~l~~vgl~~~~~~~~p-----~~LSgG~~QRv~iArAL~~~P~ll 183 (331)
T PRK15079 133 SRQ------------------------EVKDRVKAMMLKVGLLPNLINRYP-----HEFSGGQCQRIGIARALILEPKLI 183 (331)
T ss_pred CHH------------------------HHHHHHHHHHHHcCCChHHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEE
Confidence 000 1122467789999994 4556544 569999999999999999999999
Q ss_pred eeeCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 152 FMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 152 lLDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
++||||||||..++.+|++.|+++.+..+. +++.++|....+...+|+|++|++|++++.|+.+++.
T Consensus 184 ilDEPts~LD~~~~~~i~~lL~~l~~~~~~-til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 184 ICDEPVSALDVSIQAQVVNLLQQLQREMGL-SLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999998764444 5556778888999999999999999999999998874
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.1e-24 Score=220.48 Aligned_cols=189 Identities=23% Similarity=0.337 Sum_probs=152.8
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcc----cceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVP----QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRRE 76 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~----~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e 76 (1230)
+|+|+|..+. .+|+|.++|++++.... +.-++--.|...+|+.|||.||+.-++..+.. +.......+-
T Consensus 47 fNlitG~~~P---~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~---~~~~l~~~~~- 119 (250)
T COG0411 47 FNLITGFYKP---SSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLG---LSGLLGRPRA- 119 (250)
T ss_pred eeeecccccC---CCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhh---hhhhhccccc-
Confidence 3677777653 47999999999986543 35577778999999999999999998765421 1000000000
Q ss_pred HhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCC
Q 000907 77 KAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEI 156 (1230)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEP 156 (1230)
..+.+++.+....+|+.+||.+.+|+..|+ ||+||||||.|||||+++|++|+||||
T Consensus 120 ------------------~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~-----LsyG~qR~LEIArALa~~P~lLLLDEP 176 (250)
T COG0411 120 ------------------RKEEREARERARELLEFVGLGELADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEP 176 (250)
T ss_pred ------------------hhhHHHHHHHHHHHHHHcCCchhhcchhhc-----CChhHhHHHHHHHHHhcCCCEEEecCc
Confidence 011223344567899999999999999874 999999999999999999999999999
Q ss_pred CcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 157 STGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 157 TSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
.+||.+.-+.++.+.++++.+ .++++|+.|.|.++-+..++|||+||+.|+++..|+++++.+
T Consensus 177 aAGln~~e~~~l~~~i~~i~~-~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 177 AAGLNPEETEELAELIRELRD-RGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred cCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhc
Confidence 999999999999999999986 345677789999999999999999999999999999999753
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-24 Score=240.51 Aligned_cols=175 Identities=21% Similarity=0.282 Sum_probs=137.2
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC-------cccceEEEecccc--cccCCCCHHHHHHHHhhccCCCCccchhhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF-------VPQRTAAYISQHD--IHIGEMTVRETLAFSARCQGVGSRYDMLVE 71 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~-------~~~~~~~yV~Q~d--~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~ 71 (1230)
||+|+|.+. ..+|+|.++|+++... ..++.+|||+|++ .++ ..||+||+.|+....+.
T Consensus 50 l~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~--------- 116 (290)
T PRK13634 50 LQHLNGLLQ---PTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGV--------- 116 (290)
T ss_pred HHHHhcCCC---CCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCC---------
Confidence 467777765 3479999999987521 1246799999985 344 57999999987542210
Q ss_pred hhHHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCc-ccccccccCCccccCcccccchhHHHHHHhcCCce
Q 000907 72 LSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD-VCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHA 150 (1230)
Q Consensus 72 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~-~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~I 150 (1230)
... +..+.++.+++.+||. +..++.+ +.|||||||||+||++|+.+|+|
T Consensus 117 -~~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGq~qrv~lAraL~~~P~l 166 (290)
T PRK13634 117 -SEE------------------------DAKQKAREMIELVGLPEELLARSP-----FELSGGQMRRVAIAGVLAMEPEV 166 (290)
T ss_pred -CHH------------------------HHHHHHHHHHHHCCCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCE
Confidence 000 0112467899999997 5667655 46999999999999999999999
Q ss_pred eeeeCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 151 LFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 151 LlLDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
|+|||||+|||+.+...+++.|+++++..|.|+++ ++|...++...+|+|++|++|++++.|+.+++.
T Consensus 167 lllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tvii-itHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 167 LVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVL-VTHSMEDAARYADQIVVMHKGTVFLQGTPREIF 234 (290)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999987644555554 556677899999999999999999999988763
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-24 Score=241.44 Aligned_cols=191 Identities=23% Similarity=0.313 Sum_probs=144.2
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC-------cccceEEEecccc--cccCCCCHHHHHHHHhhccCCCCccchhhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF-------VPQRTAAYISQHD--IHIGEMTVRETLAFSARCQGVGSRYDMLVE 71 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~-------~~~~~~~yV~Q~d--~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~ 71 (1230)
||+|+|.+. ..+|+|+++|.++... ..++.+|||+|++ .+++ .||.||+.|+.+..+.
T Consensus 49 l~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~--------- 115 (288)
T PRK13643 49 LQHLNGLLQ---PTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGI--------- 115 (288)
T ss_pred HHHHhcCCC---CCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCC---------
Confidence 467788765 3489999999987521 1346899999985 4555 6999999997643210
Q ss_pred hhHHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCc-ccccccccCCccccCcccccchhHHHHHHhcCCce
Q 000907 72 LSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD-VCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHA 150 (1230)
Q Consensus 72 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~-~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~I 150 (1230)
... +..+.++.+++.+||. +..+..+ +.||||||||++||++|+.+|+|
T Consensus 116 -~~~------------------------~~~~~~~~~l~~~~L~~~~~~~~~-----~~LSgGqkqrvaiA~aL~~~p~i 165 (288)
T PRK13643 116 -PKE------------------------KAEKIAAEKLEMVGLADEFWEKSP-----FELSGGQMRRVAIAGILAMEPEV 165 (288)
T ss_pred -CHH------------------------HHHHHHHHHHHHcCCChhhccCCc-----ccCCHHHHHHHHHHHHHHhCCCE
Confidence 000 0122467789999996 4556544 56999999999999999999999
Q ss_pred eeeeCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH---HHHhcCC
Q 000907 151 LFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ---FFISMGF 227 (1230)
Q Consensus 151 LlLDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~---~f~~~G~ 227 (1230)
++|||||+|||+.++..+.+.|+++++ .+.|+++ ++|...++...+|+|++|++|++++.|+++++.+ .+...|+
T Consensus 166 llLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~-vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 243 (288)
T PRK13643 166 LVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVL-VTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHEL 243 (288)
T ss_pred EEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEE-EecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcCHHHHHHcCC
Confidence 999999999999999999999999875 3555555 5566688889999999999999999999988742 2445566
Q ss_pred CCCCCCCch
Q 000907 228 KCPKRKGIA 236 (1230)
Q Consensus 228 ~~p~~~n~a 236 (1230)
.+|.....+
T Consensus 244 ~~p~~~~~~ 252 (288)
T PRK13643 244 GVPKATHFA 252 (288)
T ss_pred CCChHHHHH
Confidence 655543333
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.4e-24 Score=235.21 Aligned_cols=176 Identities=25% Similarity=0.349 Sum_probs=139.1
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 77 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~ 77 (1230)
|++|+|..+ ..+|+|.+||.++.... .++.++||+|++.+++.+||+||+.++.+..... ..
T Consensus 44 l~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~----------~~-- 108 (242)
T cd03295 44 MKMINRLIE---PTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWP----------KE-- 108 (242)
T ss_pred HHHHhcCCC---CCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCCC----------HH--
Confidence 467888765 34799999999875422 2467999999999999999999999875432100 00
Q ss_pred hhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcc--cccccccCCccccCcccccchhHHHHHHhcCCceeeeeC
Q 000907 78 AAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDV--CADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDE 155 (1230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~--~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDE 155 (1230)
+..+.++++++.+||++ ..++.+ +.|||||||||+||+||+.+|++++|||
T Consensus 109 ----------------------~~~~~~~~~l~~l~l~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 161 (242)
T cd03295 109 ----------------------KIRERADELLALVGLDPAEFADRYP-----HELSGGQQQRVGVARALAADPPLLLMDE 161 (242)
T ss_pred ----------------------HHHHHHHHHHHHcCCCcHHHHhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 01123567899999985 555544 5699999999999999999999999999
Q ss_pred CCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 156 ISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 156 PTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||+|||+.++..+.+.|+++++..++|+|++. |...++...+|+|++|++|++++.|+++++.
T Consensus 162 Pt~~LD~~~~~~l~~~L~~~~~~~g~tvii~s-H~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 162 PFGALDPITRDQLQEEFKRLQQELGKTIVFVT-HDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEe-cCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999998764356655544 5556888999999999999999999987763
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-24 Score=241.86 Aligned_cols=174 Identities=20% Similarity=0.327 Sum_probs=134.6
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC-------------------cccceEEEecccc--cccCCCCHHHHHHHHhhc
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF-------------------VPQRTAAYISQHD--IHIGEMTVRETLAFSARC 59 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~-------------------~~~~~~~yV~Q~d--~l~~~lTVrEtL~f~a~l 59 (1230)
+|+|+|..+ ..+|+|+++|.++.+. ..++.++||+|++ .+++ .||+||+.|+...
T Consensus 69 l~~L~Gl~~---p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~ 144 (320)
T PRK13631 69 VTHFNGLIK---SKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVA 144 (320)
T ss_pred HHHHhCCCC---CCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHh
Confidence 467777765 3489999999887532 1246899999986 4565 5999999987532
Q ss_pred cCCCCccchhhhhhHHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCc-ccccccccCCccccCcccccchh
Q 000907 60 QGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD-VCADTVVGDEMLRGISGGQRKRV 138 (1230)
Q Consensus 60 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~-~~~dT~VG~~~~rgLSGGqKrRv 138 (1230)
... +.. +..+.++.+++.+||+ +..+.. .+.|||||||||
T Consensus 145 ~~~----------~~~------------------------~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgGqkqRv 185 (320)
T PRK13631 145 LGV----------KKS------------------------EAKKLAKFYLNKMGLDDSYLERS-----PFGLSGGQKRRV 185 (320)
T ss_pred cCC----------CHH------------------------HHHHHHHHHHHHcCCChhHhcCC-----cccCCHHHHHHH
Confidence 110 000 0112456789999997 445543 356999999999
Q ss_pred HHHHHHhcCCceeeeeCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhH
Q 000907 139 TTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218 (1230)
Q Consensus 139 sIA~aL~~~p~ILlLDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l 218 (1230)
+|||||+.+|+||+|||||+|||+.++..+++.|+++++ .++|++ .++|..+++...+|+|++|++|++++.|+++++
T Consensus 186 aiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~Tii-ivtHd~~~~~~~adri~vl~~G~i~~~g~~~~~ 263 (320)
T PRK13631 186 AIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVF-VITHTMEHVLEVADEVIVMDKGKILKTGTPYEI 263 (320)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEE-EEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998865 355544 456667788899999999999999999999876
Q ss_pred H
Q 000907 219 E 219 (1230)
Q Consensus 219 ~ 219 (1230)
.
T Consensus 264 ~ 264 (320)
T PRK13631 264 F 264 (320)
T ss_pred h
Confidence 3
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-24 Score=242.92 Aligned_cols=181 Identities=18% Similarity=0.241 Sum_probs=139.4
Q ss_pred CccccCCcCC--CCceeEEEEECCccCCCC-----cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhh
Q 000907 1 MLALAGKLDS--SLKASGKVTYNGHDMHEF-----VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELS 73 (1230)
Q Consensus 1 l~~Lag~~~~--~~~~~G~V~vnG~~~~~~-----~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~ 73 (1230)
|++|+|.... +...+|+|.++|.++... ..++.++||+|++++++ .||+|||.|+...... .
T Consensus 125 l~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~----------~ 193 (329)
T PRK14257 125 LRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGI----------N 193 (329)
T ss_pred HHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCC----------C
Confidence 3566665531 113489999999998631 23578999999998774 8999999987543210 0
Q ss_pred HHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeee
Q 000907 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFM 153 (1230)
Q Consensus 74 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlL 153 (1230)
..+. .++.++..++..+|.+..++.++.. +.+|||||||||+|||||+.+|+|++|
T Consensus 194 ~~~~-----------------------~~~~~~~~l~~~~L~~~l~~~~~~~-~~~LSgGqkqRl~LARAl~~~p~IlLL 249 (329)
T PRK14257 194 DRKI-----------------------LEKIVEKSLKSAALWDEVKDDLDKA-GNALSGGQQQRLCIARAIALEPEVLLM 249 (329)
T ss_pred hHHH-----------------------HHHHHHHHHHHcCCcchhhhhhhCC-cccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 0000 0123456778888876667777754 457999999999999999999999999
Q ss_pred eCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 154 DEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 154 DEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||||||||+.+...+.+.|+++.+ ++ +++.++|...++.+.+|+|++|++|++++.|+++++.
T Consensus 250 DEPts~LD~~~~~~i~~~i~~l~~--~~-Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 250 DEPTSALDPIATAKIEELILELKK--KY-SIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred eCCcccCCHHHHHHHHHHHHHHhc--CC-EEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999998764 44 4555667778888989999999999999999999874
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-24 Score=232.55 Aligned_cols=173 Identities=27% Similarity=0.419 Sum_probs=138.5
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC--cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF--VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~--~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
||+|+|..+ ..+|+|+++|.++... ..++.++||+|++.+++.+||+||+.+..+..+.. ..+
T Consensus 45 l~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~----------~~~-- 109 (220)
T cd03263 45 LKMLTGELR---PTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLP----------KSE-- 109 (220)
T ss_pred HHHHhCCCC---CCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCC----------HHH--
Confidence 467788764 3589999999987532 23467999999999999999999999865432100 000
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
..+.++.+++.+||.+..++.++ .||||||||++||++|+.+|++++|||||+
T Consensus 110 ----------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEP~~ 162 (220)
T cd03263 110 ----------------------IKEEVELLLRVLGLTDKANKRAR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTS 162 (220)
T ss_pred ----------------------HHHHHHHHHHHcCCHHHHhChhh-----hCCHHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 01235678999999988887764 599999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhH
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l 218 (1230)
|||+.+...+.+.|+++++ +.|++ .++|....+...+|++++|++|++++.|+++++
T Consensus 163 ~LD~~~~~~l~~~l~~~~~--~~tii-~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 163 GLDPASRRAIWDLILEVRK--GRSII-LTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCCHHHHHHHHHHHHHHhc--CCEEE-EEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999998864 45544 455666788889999999999999999998764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-24 Score=230.48 Aligned_cols=168 Identities=21% Similarity=0.336 Sum_probs=135.0
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhc
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAK 80 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~ 80 (1230)
|++|+|.++ ..+|+|.+||+++.. ..++.++||+|++.+++.+||+||+.+....++.. ..
T Consensus 43 l~~l~G~~~---~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~----------~~----- 103 (210)
T cd03269 43 IRMILGIIL---PDSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLK----------KE----- 103 (210)
T ss_pred HHHHhCCCC---CCceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCC----------hH-----
Confidence 467888765 348999999998754 33568999999999999999999999865432100 00
Q ss_pred cCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCccc
Q 000907 81 IIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGL 160 (1230)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGL 160 (1230)
+..+.++++++.+||++..++.+ +.||||||||++||++|+.+|++++|||||+||
T Consensus 104 -------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~~lllDEP~~~L 159 (210)
T cd03269 104 -------------------EARRRIDEWLERLELSEYANKRV-----EELSKGNQQKVQFIAAVIHDPELLILDEPFSGL 159 (210)
T ss_pred -------------------HHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 01123677899999998888765 469999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEc
Q 000907 161 DSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213 (1230)
Q Consensus 161 Ds~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G 213 (1230)
|+.+...+.+.|+++++ .++|+++ ++|...++.+.+|++++|++|++++.|
T Consensus 160 D~~~~~~~~~~l~~~~~-~~~tii~-~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 160 DPVNVELLKDVIRELAR-AGKTVIL-STHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CHHHHHHHHHHHHHHHH-CCCEEEE-ECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999998875 3555554 556667888999999999999998865
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-24 Score=247.97 Aligned_cols=178 Identities=22% Similarity=0.354 Sum_probs=142.8
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 77 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~ 77 (1230)
||+|+|.++ -.+|+|+++|+++.... .++.+|||+|++.+++.+||+||+.++..-.. .++... .
T Consensus 46 Lk~LaGll~---p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~--~~~~~~---~---- 113 (402)
T PRK09536 46 LRAINGTLT---PTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHR--SRFDTW---T---- 113 (402)
T ss_pred HHHHhcCCC---CCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhc--ccccCC---C----
Confidence 577888775 34899999999886532 34679999999999899999999998642100 000000 0
Q ss_pred hhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCC
Q 000907 78 AAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 157 (1230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPT 157 (1230)
++.++.++.+++.+||.+..|+.+ +.||||||||+.|||||+++|+||+|||||
T Consensus 114 ---------------------~~~~~~v~~~le~vgl~~~~~~~~-----~~LSgGerQRv~IArAL~~~P~iLLLDEPt 167 (402)
T PRK09536 114 ---------------------ETDRAAVERAMERTGVAQFADRPV-----TSLSGGERQRVLLARALAQATPVLLLDEPT 167 (402)
T ss_pred ---------------------HHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 001234788999999998888766 469999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhH
Q 000907 158 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218 (1230)
Q Consensus 158 SGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l 218 (1230)
+|||+.+..++++.|+++++ .+.|+++ +.|..+++...+|++++|++|++++.|+++++
T Consensus 168 sgLD~~~~~~l~~lL~~l~~-~g~TIIi-vsHdl~~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 168 ASLDINHQVRTLELVRRLVD-DGKTAVA-AIHDLDLAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred ccCCHHHHHHHHHHHHHHHh-cCCEEEE-EECCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999986 4555555 55667899999999999999999999999875
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.1e-24 Score=231.98 Aligned_cols=173 Identities=19% Similarity=0.332 Sum_probs=136.1
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc----ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV----PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRRE 76 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~----~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e 76 (1230)
|++|+|..+ ..+|+|+++|.++.... .++.++|++|++.+++.+||+||+.++..... . .+
T Consensus 43 l~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~--~----------~~ 107 (222)
T cd03224 43 LKTIMGLLP---PRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR--R----------AK 107 (222)
T ss_pred HHHHhCCCC---CCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC--c----------hh
Confidence 467888765 34799999998875432 24569999999999999999999998754221 0 00
Q ss_pred HhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHc-CCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeC
Q 000907 77 KAAKIIPDADIDVFMKAVVREGQEANVITDYILKVL-DLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDE 155 (1230)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~l-gL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDE 155 (1230)
.+..++.+++.+ +|++..|+.+ +.||||||||++|||||+.+|++++|||
T Consensus 108 ------------------------~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 158 (222)
T cd03224 108 ------------------------RKARLERVYELFPRLKERRKQLA-----GTLSGGEQQMLAIARALMSRPKLLLLDE 158 (222)
T ss_pred ------------------------HHHHHHHHHHHHHhhhhhhhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 011244566666 4777667655 4599999999999999999999999999
Q ss_pred CCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 156 ISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 156 PTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||+|||+.++..+++.|+++++ .+.|+++ ++|...++...+|++++|++|++++.|+.+++.
T Consensus 159 Pt~~LD~~~~~~l~~~l~~~~~-~~~tiii-~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 159 PSEGLAPKIVEEIFEAIRELRD-EGVTILL-VEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred CcccCCHHHHHHHHHHHHHHHH-CCCEEEE-EeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999875 4555555 555667889999999999999999999987653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-24 Score=230.63 Aligned_cols=168 Identities=27% Similarity=0.447 Sum_probs=135.3
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc--ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV--PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~--~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
|++|+|.++. .+|+|.+||.++.... .++.++||+|++.+++.+||+||+.+....+.. ...
T Consensus 42 l~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~----------~~~--- 105 (211)
T cd03264 42 MRILATLTPP---SSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGI----------PSK--- 105 (211)
T ss_pred HHHHhCCCCC---CccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCC----------CHH---
Confidence 4678887653 4899999998875432 246799999999999999999999986543210 000
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
+..+.++.+++.+||++..|+.++ .||||||||++||+||+.+|++++|||||+
T Consensus 106 ---------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~ 159 (211)
T cd03264 106 ---------------------EVKARVDEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTA 159 (211)
T ss_pred ---------------------HHHHHHHHHHHHCCCHHHHhCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 001236778999999988887664 599999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEc
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G 213 (1230)
|||..+...+.+.|+++++ +. +++.++|...++.+.+|++++|++|++++.|
T Consensus 160 ~LD~~~~~~l~~~l~~~~~--~~-tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 160 GLDPEERIRFRNLLSELGE--DR-IVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred cCCHHHHHHHHHHHHHHhC--CC-EEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999998864 44 4555667777888999999999999999876
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-24 Score=229.38 Aligned_cols=165 Identities=24% Similarity=0.348 Sum_probs=133.9
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC-cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF-VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~-~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
||+|+|.++ ..+|+|.+||.++... ..++.++||+|++.+++.+||+||+.+.......
T Consensus 43 l~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~----------------- 102 (208)
T cd03268 43 MKIILGLIK---PDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGI----------------- 102 (208)
T ss_pred HHHHhCCcC---CCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCC-----------------
Confidence 467888765 3589999999987532 2246799999999999999999999986532110
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
.++.++.+++.+||.+..++.++ .|||||||||+||++|+.+|++++|||||+|
T Consensus 103 ---------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~ 156 (208)
T cd03268 103 ---------------------RKKRIDEVLDVVGLKDSAKKKVK-----GFSLGMKQRLGIALALLGNPDLLILDEPTNG 156 (208)
T ss_pred ---------------------cHHHHHHHHHHcCCHHHHhhhHh-----hCCHHHHHHHHHHHHHhcCCCEEEECCCccc
Confidence 01135678899999888877654 5999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEc
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G 213 (1230)
||+.+...+.+.|+++++ .++|+++ ++|...++...+|++++|++|++++.|
T Consensus 157 LD~~~~~~l~~~l~~~~~-~~~tii~-~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 157 LDPDGIKELRELILSLRD-QGITVLI-SSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCHHHHHHHHHHHHHHHH-CCCEEEE-EcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999998875 4566555 556667888899999999999999876
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-24 Score=232.19 Aligned_cols=165 Identities=24% Similarity=0.350 Sum_probs=131.5
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc------ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSR 74 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~------~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~ 74 (1230)
||+|+|.++. .+|+|.+||.++.... .++.++|++|++.+++.+||+||+.++.+..+. ..
T Consensus 46 l~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~----------~~ 112 (216)
T TIGR00960 46 LKLILGIEKP---TRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGV----------PP 112 (216)
T ss_pred HHHHhCCCCC---CceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcCC----------CH
Confidence 4678887653 4799999999875321 346799999999999999999999987543210 00
Q ss_pred HHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeee
Q 000907 75 REKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMD 154 (1230)
Q Consensus 75 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLD 154 (1230)
. +.++.++.+++.+||++..+..++ .|||||||||+||+||+.+|++++||
T Consensus 113 ~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~llllD 163 (216)
T TIGR00960 113 R------------------------DANERVSAALEKVGLEGKAHALPM-----QLSGGEQQRVAIARAIVHKPPLLLAD 163 (216)
T ss_pred H------------------------HHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 0 001236778999999988887664 59999999999999999999999999
Q ss_pred CCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeE
Q 000907 155 EISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQI 209 (1230)
Q Consensus 155 EPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~v 209 (1230)
|||+|||+.++..+.+.|+++++ .+.|+++ ++|..+++...+|++++|++|++
T Consensus 164 EPt~~LD~~~~~~l~~~l~~~~~-~~~tii~-vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 164 EPTGNLDPELSRDIMRLFEEFNR-RGTTVLV-ATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHH-CCCEEEE-EeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999865 3555555 55666788899999999999974
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-24 Score=232.21 Aligned_cols=169 Identities=28% Similarity=0.406 Sum_probs=135.1
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC--cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF--VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~--~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
||+|+|..+. .+|+|.++|+++... ..++.++||+|++.+++.+||+||+.+..+..+. ...
T Consensus 48 l~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~----------~~~--- 111 (218)
T cd03266 48 LRMLAGLLEP---DAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGL----------KGD--- 111 (218)
T ss_pred HHHHhCCcCC---CCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCC----------CHH---
Confidence 4678887653 489999999987642 2346799999999999999999999986543210 000
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
+..+.++++++.+||.+..+..++ .||||||||++||+||+.+|++++|||||+
T Consensus 112 ---------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~illlDEPt~ 165 (218)
T cd03266 112 ---------------------ELTARLEELADRLGMEELLDRRVG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTT 165 (218)
T ss_pred ---------------------HHHHHHHHHHHHcCCHHHHhhhhh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 011246779999999888876654 599999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEc
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G 213 (1230)
|||+.+...+.+.|+++++ .++|+|+ ++|...++...+|++++|++|++++.|
T Consensus 166 ~LD~~~~~~l~~~l~~~~~-~~~tii~-~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 166 GLDVMATRALREFIRQLRA-LGKCILF-STHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CCCHHHHHHHHHHHHHHHH-CCCEEEE-EeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999864 4556555 555567889999999999999998865
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.3e-24 Score=234.49 Aligned_cols=177 Identities=23% Similarity=0.338 Sum_probs=137.9
Q ss_pred CccccCCcCCC--CceeEEEEECCccCCCC-----cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhh
Q 000907 1 MLALAGKLDSS--LKASGKVTYNGHDMHEF-----VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELS 73 (1230)
Q Consensus 1 l~~Lag~~~~~--~~~~G~V~vnG~~~~~~-----~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~ 73 (1230)
||+|+|.+.+. ...+|+|+++|.++... ..++.++||+|++.+++ +||+||+.+..+.++. . .
T Consensus 44 l~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~---~------~ 113 (247)
T TIGR00972 44 LRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGI---K------D 113 (247)
T ss_pred HHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCC---C------C
Confidence 46788876531 23489999999987541 12467999999998888 9999999987543210 0 0
Q ss_pred HHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCc----ccccccccCCccccCcccccchhHHHHHHhcCCc
Q 000907 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD----VCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAH 149 (1230)
Q Consensus 74 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~----~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ 149 (1230)
.. +..+.++.+++.+||. +..++.+ +.||||||||++|||||+.+|+
T Consensus 114 ~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LSgG~~qrv~laral~~~p~ 164 (247)
T TIGR00972 114 KK------------------------ELDEIVEESLKKAALWDEVKDRLHDSA-----LGLSGGQQQRLCIARALAVEPE 164 (247)
T ss_pred HH------------------------HHHHHHHHHHHHcCCCcchhhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCC
Confidence 00 0112356788999997 5566544 4699999999999999999999
Q ss_pred eeeeeCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 150 ALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 150 ILlLDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
+++|||||+|||+.+...+++.|+++++ +.|+ +.++|...++...+|++++|++|++++.|+++++.
T Consensus 165 llllDEPt~~LD~~~~~~l~~~l~~~~~--~~ti-iivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 165 VLLLDEPTSALDPIATGKIEELIQELKK--KYTI-VIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeE-EEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999998875 3454 44556667899999999999999999999988763
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-23 Score=231.38 Aligned_cols=171 Identities=22% Similarity=0.298 Sum_probs=134.4
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcc-------cceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVP-------QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELS 73 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~-------~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~ 73 (1230)
||+|+|.++ ..+|+|++||+++..... ++.++|++|++.+++.+||+||+.+...+... .
T Consensus 52 l~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~----------~ 118 (233)
T PRK11629 52 LHLLGGLDT---PTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKK----------K 118 (233)
T ss_pred HHHHhcCCC---CCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCC----------C
Confidence 467888764 358999999998764321 25699999999999999999999987543210 0
Q ss_pred HHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeee
Q 000907 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFM 153 (1230)
Q Consensus 74 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlL 153 (1230)
.. +.++.++.+++.+||++..++.+ +.||||||||++||+||+.+|+|++|
T Consensus 119 ~~------------------------~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllL 169 (233)
T PRK11629 119 PA------------------------EINSRALEMLAAVGLEHRANHRP-----SELSGGERQRVAIARALVNNPRLVLA 169 (233)
T ss_pred HH------------------------HHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 00 00123677899999988777665 46999999999999999999999999
Q ss_pred eCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcCh
Q 000907 154 DEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPL 215 (1230)
Q Consensus 154 DEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~ 215 (1230)
||||+|||+.+...+.+.|+++++..+.|+|++.|+ ..++.. +|++++|++|++++.|+.
T Consensus 170 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~-~~~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 170 DEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHD-LQLAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHh-hCEEEEEECCEEEEEecc
Confidence 999999999999999999999865445666665554 556665 589999999999998875
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.3e-24 Score=208.86 Aligned_cols=161 Identities=23% Similarity=0.347 Sum_probs=134.4
Q ss_pred ceeEEEEECCccCCCCc------ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhccCCCch
Q 000907 13 KASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDAD 86 (1230)
Q Consensus 13 ~~~G~V~vnG~~~~~~~------~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~~~~~~~ 86 (1230)
-..|+|.+||++++... .||.+|.|.|+--|+++.||.||+.|..+..+..
T Consensus 54 pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~----------------------- 110 (223)
T COG2884 54 PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKP----------------------- 110 (223)
T ss_pred CCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhccCCC-----------------------
Confidence 45899999999997542 4689999999999999999999999987765421
Q ss_pred hhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcccchHHHH
Q 000907 87 IDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTF 166 (1230)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGLDs~sa~ 166 (1230)
..++++.|.++|+..||.+.++. ....|||||||||+||||++.+|++|+-||||-.||+.++.
T Consensus 111 -----------~~~i~~rV~~~L~~VgL~~k~~~-----lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~ 174 (223)
T COG2884 111 -----------PREIRRRVSEVLDLVGLKHKARA-----LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSW 174 (223)
T ss_pred -----------HHHHHHHHHHHHHHhccchhhhc-----CccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHH
Confidence 11234568889999999999984 44579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcC
Q 000907 167 HIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGP 214 (1230)
Q Consensus 167 ~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~ 214 (1230)
+|++.+.++.+ .|.| |+.-+|...-+-.+-.+++.|++|+++....
T Consensus 175 ~im~lfeeinr-~GtT-Vl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 175 EIMRLFEEINR-LGTT-VLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHHHHHhh-cCcE-EEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 99999999986 4444 4445566666677777999999999987643
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-23 Score=228.87 Aligned_cols=180 Identities=26% Similarity=0.311 Sum_probs=134.3
Q ss_pred eEeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHh--------CCCC--CC---eEEE------EEEECCeecChh-----
Q 000907 687 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLA--------GRKT--RG---YITG------NITISGYPKNQE----- 742 (1230)
Q Consensus 687 ~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~--------g~~~--~~---~~~G------~i~~~g~~~~~~----- 742 (1230)
.-|+|||..|+.|++++|.|+||||||||++.+. +... ++ ...| -|.+|..++...
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4799999999999999999999999999998552 1100 10 1111 366776554210
Q ss_pred -c-------cc----------------ceEEEEccCCccCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 000907 743 -T-------FT----------------RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN 798 (1230)
Q Consensus 743 -~-------~~----------------~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~ 798 (1230)
. .| ..+.|..++......+||.|++.|...+. ..+++.++++.+||.
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL~ 159 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGLG 159 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCCc
Confidence 0 00 01345556666667899999998875432 123467789999997
Q ss_pred cc-ccccccCCCCCCCCHHHHHHHHHHHHHhhC---CCEeEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCH
Q 000907 799 PL-RQALVGLPGVNGLSTEQRKRLTIAVELVAN---PSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSI 874 (1230)
Q Consensus 799 ~~-~~~~~~~~~~~~lSgGqrqrl~ia~al~~~---p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~ 874 (1230)
.. .+.. .+.||||||||++||++|+.+ |++++|||||+|||+.....+.+.|+++.++|.|||+++|++..
T Consensus 160 ~l~l~~~-----~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~ 234 (261)
T cd03271 160 YIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDV 234 (261)
T ss_pred hhhhcCc-----cccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 63 4443 357999999999999999996 79999999999999999999999999998889999999999862
Q ss_pred HHHHHHhc
Q 000907 875 DIFEAFDA 882 (1230)
Q Consensus 875 ~i~~~fd~ 882 (1230)
.+..|+
T Consensus 235 --i~~aD~ 240 (261)
T cd03271 235 --IKCADW 240 (261)
T ss_pred --HHhCCE
Confidence 244555
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.1e-24 Score=266.04 Aligned_cols=178 Identities=21% Similarity=0.335 Sum_probs=134.9
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 77 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~ 77 (1230)
+|+|+|.... .+|+|++||.++++.. .++.++||+|++.+|+ .|+||||.++..-. ...+
T Consensus 378 l~lL~gl~~p---~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~~~------------~d~~- 440 (588)
T PRK13657 378 INLLQRVFDP---QSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFN-RSIEDNIRVGRPDA------------TDEE- 440 (588)
T ss_pred HHHHhcCcCC---CCCEEEECCEEhhhCCHHHHHhheEEEecCccccc-ccHHHHHhcCCCCC------------CHHH-
Confidence 3567777653 5899999999987653 3578999999988775 69999998863100 0000
Q ss_pred hhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCC
Q 000907 78 AAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 157 (1230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPT 157 (1230)
+...... .-.+..++ .|+++.||.+|+++ +.||||||||++|||||+++|+|++|||||
T Consensus 441 -------------i~~al~~-----~~l~~~i~--~lp~gldt~i~~~g-~~LSgGq~QRialARall~~~~iliLDEpt 499 (588)
T PRK13657 441 -------------MRAAAER-----AQAHDFIE--RKPDGYDTVVGERG-RQLSGGERQRLAIARALLKDPPILILDEAT 499 (588)
T ss_pred -------------HHHHHHH-----hCHHHHHH--hCcccccchhcCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0000000 00111222 27889999999765 579999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 158 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 158 SGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|+||+.++..+.+.|+++. .++|+++..|++ +....+|+|++|++|++++.|+++++.+
T Consensus 500 s~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~--~~~~~~D~ii~l~~G~i~~~g~~~~l~~ 558 (588)
T PRK13657 500 SALDVETEAKVKAALDELM--KGRTTFIIAHRL--STVRNADRILVFDNGRVVESGSFDELVA 558 (588)
T ss_pred cCCCHHHHHHHHHHHHHHh--cCCEEEEEEecH--HHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999998764 357777766665 4567899999999999999999999854
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-23 Score=235.69 Aligned_cols=174 Identities=19% Similarity=0.247 Sum_probs=137.4
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEeccccc-ccCCCCHHHHHHHHhhccCCCCccchhhhhhHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDI-HIGEMTVRETLAFSARCQGVGSRYDMLVELSRRE 76 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~-l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e 76 (1230)
|++|+|.++. .+|+|+++|.++.... .++.+|||+|++. .++..||+||+.|+....+. ...
T Consensus 48 l~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~----------~~~- 113 (274)
T PRK13647 48 LLHLNGIYLP---QRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGL----------DKD- 113 (274)
T ss_pred HHHHhcCCCC---CceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCC----------CHH-
Confidence 4677777653 5899999999876432 2467999999862 45568999999986432110 000
Q ss_pred HhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCC
Q 000907 77 KAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEI 156 (1230)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEP 156 (1230)
+.++.++.+++.+||.+..+..++ .|||||||||+||+||+.+|++++||||
T Consensus 114 -----------------------~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgG~~qrv~laraL~~~p~llllDEP 165 (274)
T PRK13647 114 -----------------------EVERRVEEALKAVRMWDFRDKPPY-----HLSYGQKKRVAIAGVLAMDPDVIVLDEP 165 (274)
T ss_pred -----------------------HHHHHHHHHHHHCCCHHHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 011236778999999988887664 5999999999999999999999999999
Q ss_pred CcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhH
Q 000907 157 STGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218 (1230)
Q Consensus 157 TSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l 218 (1230)
|+|||+.++..+++.|+++++ .+.|+++ ++|...++.+.+|+|++|++|++++.|+++++
T Consensus 166 t~~LD~~~~~~l~~~l~~~~~-~g~tili-~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 166 MAYLDPRGQETLMEILDRLHN-QGKTVIV-ATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred CcCCCHHHHHHHHHHHHHHHH-CCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999875 3555554 55667788899999999999999999998654
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-23 Score=234.41 Aligned_cols=175 Identities=19% Similarity=0.239 Sum_probs=138.4
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC-----------cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF-----------VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDML 69 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~-----------~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~ 69 (1230)
||+|+|.++ ..+|+|.++|.++... ..++.++||+|++.+++.+||+||+.++.......
T Consensus 46 l~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~------ 116 (250)
T PRK11264 46 LRCINLLEQ---PEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGE------ 116 (250)
T ss_pred HHHHhcCCC---CCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCC------
Confidence 467888765 3479999999887531 12467999999999999999999998864211000
Q ss_pred hhhhHHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCc
Q 000907 70 VELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAH 149 (1230)
Q Consensus 70 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ 149 (1230)
.. ++.++.++.+++.+||++..|+.+ +.|||||||||+||+||+.+|+
T Consensus 117 ---~~------------------------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~Gq~qrv~la~al~~~p~ 164 (250)
T PRK11264 117 ---PK------------------------EEATARARELLAKVGLAGKETSYP-----RRLSGGQQQRVAIARALAMRPE 164 (250)
T ss_pred ---CH------------------------HHHHHHHHHHHHHcCCcchhhCCh-----hhCChHHHHHHHHHHHHhcCCC
Confidence 00 001123567889999988777655 4699999999999999999999
Q ss_pred eeeeeCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhH
Q 000907 150 ALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218 (1230)
Q Consensus 150 ILlLDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l 218 (1230)
|++|||||+|||+.++..+.+.|+++++ .+.|+++ ++|...++.+.+|++++|++|++++.|+.+++
T Consensus 165 lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~-~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 231 (250)
T PRK11264 165 VILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVI-VTHEMSFARDVADRAIFMDQGRIVEQGPAKAL 231 (250)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEE-EeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999998875 3556555 55666788899999999999999999998876
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-23 Score=225.26 Aligned_cols=151 Identities=39% Similarity=0.720 Sum_probs=125.9
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC--cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF--VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~--~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
|++|+|..+.....+|+|+++|.++... ..++.++||+|++.+++.+||+||+.++++..
T Consensus 50 l~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------------------ 111 (202)
T cd03233 50 LKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------ 111 (202)
T ss_pred HHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc------------------
Confidence 4678887653224689999999987643 23567999999999999999999998864310
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
.+ ...+.||||||||++||+||+.+|++++|||||+
T Consensus 112 ---------------------------------------~~-----~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~ 147 (202)
T cd03233 112 ---------------------------------------GN-----EFVRGISGGERKRVSIAEALVSRASVLCWDNSTR 147 (202)
T ss_pred ---------------------------------------cc-----cchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCc
Confidence 11 2224699999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEc
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G 213 (1230)
|||+.++..+++.|+++++..++|+++++||+..++.+.+|++++|++|++++.|
T Consensus 148 ~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 148 GLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999876445677888888889999999999999999999876
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-23 Score=235.74 Aligned_cols=177 Identities=19% Similarity=0.316 Sum_probs=140.2
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc------ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSR 74 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~------~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~ 74 (1230)
||+|+|..+. .+|+|+++|.++.... .++.++|++|+..+++.+||+||+.+....... + ..
T Consensus 50 l~~l~Gl~~p---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~---~------~~ 117 (269)
T PRK11831 50 LRLIGGQIAP---DHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQ---L------PA 117 (269)
T ss_pred HHHHhCCCCC---CCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccC---C------CH
Confidence 4678887653 4899999999875321 245799999999999999999999986431100 0 00
Q ss_pred HHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeee
Q 000907 75 REKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMD 154 (1230)
Q Consensus 75 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLD 154 (1230)
. +.++.++.+++.+||.+..|..++ .||||||||++||++|+.+|++++||
T Consensus 118 ~------------------------~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrv~laral~~~p~lllLD 168 (269)
T PRK11831 118 P------------------------LLHSTVMMKLEAVGLRGAAKLMPS-----ELSGGMARRAALARAIALEPDLIMFD 168 (269)
T ss_pred H------------------------HHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 0 011235678999999988887664 59999999999999999999999999
Q ss_pred CCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 155 EISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 155 EPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
|||+|||+.+...+.+.|+++++..++|+|+ ++|...++...+|++++|++|++++.|+++++.
T Consensus 169 EPt~~LD~~~~~~l~~~l~~~~~~~g~tiii-vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 169 EPFVGQDPITMGVLVKLISELNSALGVTCVV-VSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCcEEEE-EecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999987643555555 555667889999999999999999999988763
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.1e-24 Score=231.17 Aligned_cols=165 Identities=24% Similarity=0.329 Sum_probs=130.4
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-------ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELS 73 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-------~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~ 73 (1230)
||+|+|.++ ..+|+|.+||.++.... .++.++||+|++.+++.+||+||+.++...++..
T Consensus 47 l~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~---------- 113 (218)
T cd03255 47 LNILGGLDR---PTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVP---------- 113 (218)
T ss_pred HHHHhCCcC---CCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCC----------
Confidence 467888765 34899999999875422 2357999999999999999999999976533100
Q ss_pred HHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeee
Q 000907 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFM 153 (1230)
Q Consensus 74 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlL 153 (1230)
..+ ..+.++.+++.+||.+..+..++ .|||||||||+||+||+.+|+|++|
T Consensus 114 ~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~lllL 164 (218)
T cd03255 114 KKE------------------------RRERAEELLERVGLGDRLNHYPS-----ELSGGQQQRVAIARALANDPKIILA 164 (218)
T ss_pred HHH------------------------HHHHHHHHHHHcCCchhhhcChh-----hcCHHHHHHHHHHHHHccCCCEEEE
Confidence 000 01236778999999887776654 5999999999999999999999999
Q ss_pred eCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeE
Q 000907 154 DEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQI 209 (1230)
Q Consensus 154 DEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~v 209 (1230)
||||+|||+.++..+.+.|+++++..+.|++++.|++ .++. .+|++++|++|++
T Consensus 165 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 165 DEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP-ELAE-YADRIIELRDGKI 218 (218)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHh-hhcEEEEeeCCcC
Confidence 9999999999999999999998753456666655554 5665 8999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-24 Score=272.46 Aligned_cols=178 Identities=23% Similarity=0.320 Sum_probs=134.2
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 77 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~ 77 (1230)
+|+|+|... ..+|+|++||.++++.. .|+.++||+|++.+|+ .|++|||.++..- .+. +.
T Consensus 500 ~~ll~g~~~---p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~~~------------~~~-~~ 562 (694)
T TIGR01846 500 TKLLQRLYT---PQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCNPG------------APF-EH 562 (694)
T ss_pred HHHHhcCCC---CCCceEEECCEehhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCCCC------------CCH-HH
Confidence 356677654 34799999999987653 4678999999988776 6999999875310 000 00
Q ss_pred hhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCC
Q 000907 78 AAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 157 (1230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPT 157 (1230)
. .+. .. . . ..++.++ .|+++.||.||+.+ ++||||||||++|||||+++|+|++|||||
T Consensus 563 i------------~~a-~~---~-~-~l~~~i~--~lp~gl~t~i~~~g-~~LSgGq~qri~lARall~~~~ililDEpt 621 (694)
T TIGR01846 563 V------------IHA-AK---L-A-GAHDFIS--ELPQGYNTEVGEKG-ANLSGGQRQRIAIARALVGNPRILIFDEAT 621 (694)
T ss_pred H------------HHH-HH---H-c-ChHHHHH--hCcCccCcEecCCC-CCCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 0 000 00 0 0 0122222 27889999999765 579999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 158 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 158 SGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
||||+.++..+.+.|+++. .++|+|+..|++ +.+ ..+|+|++|++|++++.|+++++.+
T Consensus 622 s~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~-~~~-~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 622 SALDYESEALIMRNMREIC--RGRTVIIIAHRL-STV-RACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred cCCCHHHHHHHHHHHHHHh--CCCEEEEEeCCh-HHH-HhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 9999999999999999874 356766666554 444 5699999999999999999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.4e-24 Score=272.92 Aligned_cols=181 Identities=26% Similarity=0.396 Sum_probs=155.5
Q ss_pred ccccCCcCCCCceeEEEEECCccCCCC----cccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHH
Q 000907 2 LALAGKLDSSLKASGKVTYNGHDMHEF----VPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 77 (1230)
Q Consensus 2 ~~Lag~~~~~~~~~G~V~vnG~~~~~~----~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~ 77 (1230)
|+|.|... ..+|+++++|+++... +.++.+|||||+|.+++.+|.||||++.+++|+-.
T Consensus 609 ~mltG~~~---~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~-------------- 671 (885)
T KOG0059|consen 609 KMLTGETK---PTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLP-------------- 671 (885)
T ss_pred HHHhCCcc---CCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCC--------------
Confidence 34455433 5689999999998642 25689999999999999999999999999998721
Q ss_pred hhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCC
Q 000907 78 AAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 157 (1230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPT 157 (1230)
..| .++.++.+++.+||.+.+|+.+| .+|||+|||+|+|.||+++|++++|||||
T Consensus 672 ------~~d--------------i~~~v~~ll~~~~L~~~~~~~~~-----~ySgG~kRkLs~aialig~p~vi~LDEPs 726 (885)
T KOG0059|consen 672 ------RSD--------------IGSAIEKLLRLVGLGPYANKQVR-----TYSGGNKRRLSFAIALIGDPSVILLDEPS 726 (885)
T ss_pred ------hhH--------------HHHHHHHHHHHcCChhhhccchh-----hCCCcchhhHHHHHHHhcCCCEEEecCCC
Confidence 111 23458889999999999999886 49999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHHHHHhcCC
Q 000907 158 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGF 227 (1230)
Q Consensus 158 SGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~~f~~~G~ 227 (1230)
+|+|+.+++++|+.++++.+ .|+ .++.++|.+.|+..+|||+.+|.+|++..-|+.++++..|.+ ||
T Consensus 727 tGmDP~arr~lW~ii~~~~k-~g~-aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG~-gy 793 (885)
T KOG0059|consen 727 TGLDPKARRHLWDIIARLRK-NGK-AIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSRYGS-GY 793 (885)
T ss_pred CCCCHHHHHHHHHHHHHHHh-cCC-EEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhhcCC-cE
Confidence 99999999999999999875 445 666778999999999999999999999999999999988754 44
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=8e-24 Score=234.36 Aligned_cols=183 Identities=22% Similarity=0.262 Sum_probs=138.6
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc------ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSR 74 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~------~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~ 74 (1230)
|++|+|..+ ..+|+|.+||.++.... .++.++||+|++.+++.+||+||+.++..... ..++......
T Consensus 45 l~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~- 118 (243)
T TIGR02315 45 LRCINRLVE---PSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYK--PTWRSLLGRF- 118 (243)
T ss_pred HHHHhCCcC---CCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccc--cchhhhhccc-
Confidence 467888765 34899999999875421 24679999999999999999999987532100 0000000000
Q ss_pred HHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeee
Q 000907 75 REKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMD 154 (1230)
Q Consensus 75 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLD 154 (1230)
..+..+.++.+++.+||.+..|..+ +.|||||||||+||+||+.+|++++||
T Consensus 119 -----------------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllD 170 (243)
T TIGR02315 119 -----------------------SEEDKERALSALERVGLADKAYQRA-----DQLSGGQQQRVAIARALAQQPDLILAD 170 (243)
T ss_pred -----------------------cHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 0001123677899999988777655 469999999999999999999999999
Q ss_pred CCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhH
Q 000907 155 EISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218 (1230)
Q Consensus 155 EPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l 218 (1230)
|||+|||+.+...+.+.|+++++..+.|+++ ++|...++.+.+|++++|++|++++.|+++++
T Consensus 171 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii-~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 171 EPIASLDPKTSKQVMDYLKRINKEDGITVII-NLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEE-EeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 9999999999999999999987544555555 55556788899999999999999999998765
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-23 Score=230.10 Aligned_cols=176 Identities=24% Similarity=0.358 Sum_probs=140.6
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
|++|+|.++ ..+|+|+++|.++.... .++.++||+|++.+++.+||+||+.++....+. ...+
T Consensus 42 l~~l~G~~~---p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~----------~~~~--- 105 (235)
T cd03299 42 LETIAGFIK---PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKV----------DKKE--- 105 (235)
T ss_pred HHHHhCCcC---CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCC----------CHHH---
Confidence 467888765 34799999999876422 246899999999999999999999986532110 0000
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
..+.++.+++.+||.+-.++.+. .||||||||++||+||+++|++++|||||+|
T Consensus 106 ---------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~laral~~~p~llllDEPt~g 159 (235)
T cd03299 106 ---------------------IERKVLEIAEMLGIDHLLNRKPE-----TLSGGEQQRVAIARALVVNPKILLLDEPFSA 159 (235)
T ss_pred ---------------------HHHHHHHHHHHcCChhHHhcCcc-----cCCHHHHHHHHHHHHHHcCCCEEEECCCccc
Confidence 01135668889999888887664 5999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||+.++..+++.|++++...+.|++++.|+ ..++.+.+|++++|++|++++.|+.+++.
T Consensus 160 LD~~~~~~l~~~l~~~~~~~~~tili~tH~-~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 160 LDVRTKEKLREELKKIRKEFGVTVLHVTHD-FEEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecC-HHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999876446666665554 57788999999999999999999987764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-24 Score=267.91 Aligned_cols=178 Identities=22% Similarity=0.369 Sum_probs=134.4
Q ss_pred ccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 2 LALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 2 ~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
|+|+|... ..+|+|++||.++++.. .++.++||+|++.+|+ .|+||||.++..-.. ... +
T Consensus 376 ~lL~gl~~---~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~~~~-----------~~~-~- 438 (571)
T TIGR02203 376 NLIPRFYE---PDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFN-DTIANNIAYGRTEQA-----------DRA-E- 438 (571)
T ss_pred HHHHhccC---CCCCeEEECCEeHHhcCHHHHHhhceEEccCccccc-ccHHHHHhcCCCCCC-----------CHH-H-
Confidence 55666654 34799999999987543 3578999999988665 599999997631000 000 0
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
+.+.... .-.+..++ .|+++.||.||+.+ ++||||||||++||||++++|+|++||||||
T Consensus 439 ------------i~~~l~~-----~~l~~~i~--~lp~gldt~i~~~g-~~LSgGqrQRiaLARall~~~~illLDEpts 498 (571)
T TIGR02203 439 ------------IERALAA-----AYAQDFVD--KLPLGLDTPIGENG-VLLSGGQRQRLAIARALLKDAPILILDEATS 498 (571)
T ss_pred ------------HHHHHHH-----cChHHHHH--hCcCcccceecCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 0000000 00111222 37889999999775 5799999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
+||+.++..+.+.|++.+ .++|+|+..|++ +....+|+|++|++|+++..|+++++.+
T Consensus 499 ~LD~~~~~~i~~~L~~~~--~~~tiIiitH~~--~~~~~~D~ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 499 ALDNESERLVQAALERLM--QGRTTLVIAHRL--STIEKADRIVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred cCCHHHHHHHHHHHHHHh--CCCEEEEEehhh--HHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 999999999999999764 357777776665 5678899999999999999999999853
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-24 Score=262.83 Aligned_cols=179 Identities=22% Similarity=0.314 Sum_probs=135.1
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 77 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~ 77 (1230)
+|+|+|..+ ..+|+|++||.++++.. .++.++||+|++.+|+. |++||+.++..- .+.++
T Consensus 361 ~~ll~g~~~---~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~~------------~~~~~- 423 (544)
T TIGR01842 361 ARLIVGIWP---PTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGEN------------ADPEK- 423 (544)
T ss_pred HHHHhCCCC---CCCceEEECCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccCCC------------CCHHH-
Confidence 356777664 34799999999987543 36789999999988875 999999854310 00000
Q ss_pred hhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCC
Q 000907 78 AAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 157 (1230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPT 157 (1230)
. .+. . + ....++.++ .|+++.||.+|+.+ ++||||||||++|||||+++|+|++|||||
T Consensus 424 ~------------~~~-~---~--~~~~~~~i~--~l~~gl~t~~~~~g-~~LSgGq~qrl~lARall~~~~ililDEpt 482 (544)
T TIGR01842 424 I------------IEA-A---K--LAGVHELIL--RLPDGYDTVIGPGG-ATLSGGQRQRIALARALYGDPKLVVLDEPN 482 (544)
T ss_pred H------------HHH-H---H--HhChHHHHH--hCccccccccCCCc-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0 000 0 0 001223333 36788899999765 579999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 158 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 158 SGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
||||+.++..+.+.|+++.. .++|++++.|+++ ..+.+|+|++|++|++++.|+++++.+
T Consensus 483 s~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 483 SNLDEEGEQALANAIKALKA-RGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred cccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999988753 3577777776663 456799999999999999999998753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-23 Score=232.01 Aligned_cols=175 Identities=18% Similarity=0.260 Sum_probs=138.5
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC-----cccceEEEecccccccCCCCHHHHHHHHhhc-cCCCCccchhhhhhH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF-----VPQRTAAYISQHDIHIGEMTVRETLAFSARC-QGVGSRYDMLVELSR 74 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~-----~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l-~~~~~~~~~~~~~~~ 74 (1230)
|++|+|..+ ..+|+|.+||.++... ..++.++||+|++.+++.+||+||+.|+... ... ..
T Consensus 44 l~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~----------~~ 110 (240)
T PRK09493 44 LRCINKLEE---ITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGA----------SK 110 (240)
T ss_pred HHHHhCCCC---CCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCC----------CH
Confidence 467777764 3589999999987642 2246799999999999999999999886421 100 00
Q ss_pred HHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeee
Q 000907 75 REKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMD 154 (1230)
Q Consensus 75 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLD 154 (1230)
. +..+.++++++.+||++..|..+ +.||||||||++||+||+.+|++++||
T Consensus 111 ~------------------------~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllD 161 (240)
T PRK09493 111 E------------------------EAEKQARELLAKVGLAERAHHYP-----SELSGGQQQRVAIARALAVKPKLMLFD 161 (240)
T ss_pred H------------------------HHHHHHHHHHHHcCChHHHhcCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 0 01123577899999987777655 469999999999999999999999999
Q ss_pred CCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 155 EISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 155 EPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
|||+|||..+...+.+.|+++++ .++|+++ ++|...++...+|++++|++|++++.|+.+++.
T Consensus 162 EP~~~LD~~~~~~l~~~l~~~~~-~~~tiii-~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 162 EPTSALDPELRHEVLKVMQDLAE-EGMTMVI-VTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred CCcccCCHHHHHHHHHHHHHHHH-cCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999998865 4556555 555567888999999999999999999988763
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-23 Score=227.28 Aligned_cols=170 Identities=22% Similarity=0.314 Sum_probs=135.0
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc-ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~-~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
|++|+|..+ ..+|+|.++|.++.... .++.++||+|++.+++.+||+||+.++...... ...
T Consensus 41 l~~l~gl~~---~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~---------~~~----- 103 (211)
T cd03298 41 LNLIAGFET---PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLK---------LTA----- 103 (211)
T ss_pred HHHHhCCCC---CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccC---------ccH-----
Confidence 467777764 34799999999875432 246799999999999999999999885431100 000
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
+.++.++.+++.+||.+..++.+. .||||||||++||+||+.+|++++|||||+|
T Consensus 104 --------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~ia~al~~~p~llllDEP~~~ 158 (211)
T cd03298 104 --------------------EDRQAIEVALARVGLAGLEKRLPG-----ELSGGERQRVALARVLVRDKPVLLLDEPFAA 158 (211)
T ss_pred --------------------HHHHHHHHHHHHcCCHHHHhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 001236778999999988887664 6999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEc
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQG 213 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G 213 (1230)
||..++..+++.|+++++..+.|+++ ++|...++.+.+|++++|++|++++.|
T Consensus 159 LD~~~~~~l~~~l~~~~~~~~~tii~-~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 159 LDPALRAEMLDLVLDLHAETKMTVLM-VTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEE-EecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999987544555555 666678888999999999999998765
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-23 Score=229.74 Aligned_cols=175 Identities=25% Similarity=0.299 Sum_probs=136.7
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhhc
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAK 80 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~~ 80 (1230)
||+|+|.++ ..+|+|.+||.++..... ..+||+|++.+++.+||+||+.++....... ....
T Consensus 28 l~~l~Gl~~---p~~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~--------~~~~----- 89 (230)
T TIGR01184 28 LNLISGLAQ---PTSGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENIALAVDRVLPD--------LSKS----- 89 (230)
T ss_pred HHHHhCCCC---CCCceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHHHHHHHhcccC--------CCHH-----
Confidence 467777765 358999999998764322 2489999999999999999999863210000 0000
Q ss_pred cCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCccc
Q 000907 81 IIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGL 160 (1230)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSGL 160 (1230)
+.++.++.+++.+||++..++.++ .||||||||++||++|+.+|++++|||||+||
T Consensus 90 -------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gL 145 (230)
T TIGR01184 90 -------------------ERRAIVEEHIALVGLTEAADKRPG-----QLSGGMKQRVAIARALSIRPKVLLLDEPFGAL 145 (230)
T ss_pred -------------------HHHHHHHHHHHHcCCHHHHcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 011235678999999988887664 59999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhH
Q 000907 161 DSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218 (1230)
Q Consensus 161 Ds~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l 218 (1230)
|+.++..+.+.|+++++..++|+++ ++|...++.+.+|++++|++|++++.|+..++
T Consensus 146 D~~~~~~l~~~l~~~~~~~~~tii~-~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 146 DALTRGNLQEELMQIWEEHRVTVLM-VTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 9999999999999987644566555 55556788999999999999999999976544
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-23 Score=229.85 Aligned_cols=176 Identities=23% Similarity=0.322 Sum_probs=138.1
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc--ccceEEEecccccccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV--PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~--~~~~~~yV~Q~d~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
|++|+|..+. .+|+|++||.++.... .++.++|++|++.+++.+||+||+.+.+..+.. ...
T Consensus 44 l~~l~G~~~p---~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~----------~~~--- 107 (236)
T TIGR03864 44 FSLLTRLYVA---QEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGL----------SRA--- 107 (236)
T ss_pred HHHHhCCcCC---CceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCC----------CHH---
Confidence 4678887653 4799999999875422 235799999999888999999999886543210 000
Q ss_pred hccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCc
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTS 158 (1230)
+..+.++.+++.+||++..++.++ .||||||||++||+||+.+|+|++|||||+
T Consensus 108 ---------------------~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~laral~~~p~llllDEP~~ 161 (236)
T TIGR03864 108 ---------------------EARERIAALLARLGLAERADDKVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTV 161 (236)
T ss_pred ---------------------HHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 001235678899999988887665 599999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|||+.+...+.+.|+++++..+.|++++. |...++.. +|++++|++|++++.|+.+++.+
T Consensus 162 ~LD~~~~~~l~~~l~~~~~~~~~tiii~s-H~~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 162 GLDPASRAAIVAHVRALCRDQGLSVLWAT-HLVDEIEA-DDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEe-cChhhHhh-CCEEEEEeCCeEEEeCCHHHHHH
Confidence 99999999999999998754456665555 44556654 99999999999999999887643
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-23 Score=235.12 Aligned_cols=175 Identities=18% Similarity=0.280 Sum_probs=138.3
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEecccc-cccCCCCHHHHHHHHhhccCCCCccchhhhhhHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHD-IHIGEMTVRETLAFSARCQGVGSRYDMLVELSRRE 76 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d-~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e 76 (1230)
||+|+|.++ ..+|+|+++|.++.... .++.++||+|++ ..++..||+|||.|+.+..+. ...
T Consensus 50 l~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~----------~~~- 115 (279)
T PRK13650 50 VRLIDGLLE---AESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGI----------PHE- 115 (279)
T ss_pred HHHHhcCCC---CCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCC----------CHH-
Confidence 466777765 34899999999986432 246799999986 367788999999987542210 000
Q ss_pred HhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCC
Q 000907 77 KAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEI 156 (1230)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEP 156 (1230)
+..+.++.+++.+||++-.|..++ .||||||||++||+||+.+|+||+||||
T Consensus 116 -----------------------~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~qrv~lAral~~~p~lLlLDEP 167 (279)
T PRK13650 116 -----------------------EMKERVNEALELVGMQDFKEREPA-----RLSGGQKQRVAIAGAVAMRPKIIILDEA 167 (279)
T ss_pred -----------------------HHHHHHHHHHHHCCCHhHhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 112246789999999988776664 6999999999999999999999999999
Q ss_pred CcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 157 STGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 157 TSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
|+|||+.++..+++.|+++++..|.|++++.|+ ..++ ..+|+|++|++|+++..|+.+++.
T Consensus 168 t~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~-~~~~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 168 TSMLDPEGRLELIKTIKGIRDDYQMTVISITHD-LDEV-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-HHHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999976446666665555 5566 579999999999999999988764
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-23 Score=225.32 Aligned_cols=183 Identities=25% Similarity=0.322 Sum_probs=146.2
Q ss_pred ccccCCcC-C-CCceeEEEEECCccCCCCc------cc-ceEEEecccc--cccCCCCHHHHHHHHhhccCCCCccchhh
Q 000907 2 LALAGKLD-S-SLKASGKVTYNGHDMHEFV------PQ-RTAAYISQHD--IHIGEMTVRETLAFSARCQGVGSRYDMLV 70 (1230)
Q Consensus 2 ~~Lag~~~-~-~~~~~G~V~vnG~~~~~~~------~~-~~~~yV~Q~d--~l~~~lTVrEtL~f~a~l~~~~~~~~~~~ 70 (1230)
++|.|.++ + +...+|+|.++|.++-... .| +.++|++|++ .|-|.+||.+.+.=..+.....
T Consensus 49 ~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~------- 121 (316)
T COG0444 49 KAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG------- 121 (316)
T ss_pred HHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcc-------
Confidence 45677776 3 4467899999999874332 12 6899999995 6899999999997655432100
Q ss_pred hhhHHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCce
Q 000907 71 ELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHA 150 (1230)
Q Consensus 71 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~I 150 (1230)
. ..+++.+.+.++|+.+||++-.. +-+.....|||||||||.||.||+.+|++
T Consensus 122 --~-----------------------~~~ea~~~a~~~L~~Vgi~~~~~--~~~~YPhelSGGMrQRV~IAmala~~P~L 174 (316)
T COG0444 122 --L-----------------------SKKEAKERAIELLELVGIPDPER--RLKSYPHELSGGMRQRVMIAMALALNPKL 174 (316)
T ss_pred --h-----------------------hhHHHHHHHHHHHHHcCCCCHHH--HHhhCCcccCCcHHHHHHHHHHHhCCCCE
Confidence 0 01123345677999999987532 22356778999999999999999999999
Q ss_pred eeeeCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 151 LFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 151 LlLDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
|+.||||||||..+..+|++.|+++.+. .+++++.|+|...-+.+++|||+||..|++|+.|+.+++.
T Consensus 175 lIADEPTTALDvt~QaqIl~Ll~~l~~e-~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 175 LIADEPTTALDVTVQAQILDLLKELQRE-KGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred EEeCCCcchhhHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHh
Confidence 9999999999999999999999999984 4666777999999999999999999999999999999874
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-23 Score=237.59 Aligned_cols=175 Identities=19% Similarity=0.238 Sum_probs=137.0
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCC-------cccceEEEecccc--cccCCCCHHHHHHHHhhccCCCCccchhhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEF-------VPQRTAAYISQHD--IHIGEMTVRETLAFSARCQGVGSRYDMLVE 71 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~-------~~~~~~~yV~Q~d--~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~ 71 (1230)
||+|+|.+. ..+|+|+++|+++... ..++.+|||+|++ .+++ .||+||+.|+....+.
T Consensus 50 l~~L~Gl~~---p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~--------- 116 (286)
T PRK13646 50 IQNINALLK---PTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKM--------- 116 (286)
T ss_pred HHHHhcCCC---CCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCC---------
Confidence 467777765 3479999999987532 2356899999985 4555 5999999987532110
Q ss_pred hhHHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCc-ccccccccCCccccCcccccchhHHHHHHhcCCce
Q 000907 72 LSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD-VCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHA 150 (1230)
Q Consensus 72 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~-~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~I 150 (1230)
... +..+.++.+++.+||. +..++.+ +.||||||||++||+||+.+|+|
T Consensus 117 -~~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGq~qrv~laraL~~~p~i 166 (286)
T PRK13646 117 -NLD------------------------EVKNYAHRLLMDLGFSRDVMSQSP-----FQMSGGQMRKIAIVSILAMNPDI 166 (286)
T ss_pred -CHH------------------------HHHHHHHHHHHHcCCChhhhhCCc-----ccCCHHHHHHHHHHHHHHhCCCE
Confidence 000 0112367789999996 6777655 46999999999999999999999
Q ss_pred eeeeCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 151 LFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 151 LlLDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
++|||||+|||+.++..+.+.|+++++..+.|+ +.++|...++.+.+|+|++|++|++++.|+++++.
T Consensus 167 lllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tv-l~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 167 IVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTI-ILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhCCCEE-EEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999876444554 45666677888999999999999999999988764
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-23 Score=234.69 Aligned_cols=175 Identities=23% Similarity=0.288 Sum_probs=139.1
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc---ccceEEEeccccc-ccCCCCHHHHHHHHhhccCCCCccchhhhhhHHH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDI-HIGEMTVRETLAFSARCQGVGSRYDMLVELSRRE 76 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~---~~~~~~yV~Q~d~-l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e 76 (1230)
|++|+|.++. .+|+|+++|+++.+.. .++.++||+|++. +++.+||+|||.++.+.... ...
T Consensus 50 l~~i~G~~~p---~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~----------~~~- 115 (279)
T PRK13635 50 AKLLNGLLLP---EAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGV----------PRE- 115 (279)
T ss_pred HHHHhcCCCC---CCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCC----------CHH-
Confidence 4678888753 4899999999986532 2467999999873 67778999999987543210 000
Q ss_pred HhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCC
Q 000907 77 KAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEI 156 (1230)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEP 156 (1230)
+..+.++.+++.+||.+..++.++ .|||||||||+||+||+.+|+|++||||
T Consensus 116 -----------------------~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~G~~qrv~laral~~~p~lllLDEP 167 (279)
T PRK13635 116 -----------------------EMVERVDQALRQVGMEDFLNREPH-----RLSGGQKQRVAIAGVLALQPDIIILDEA 167 (279)
T ss_pred -----------------------HHHHHHHHHHHHcCChhhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 011246788999999988887765 5999999999999999999999999999
Q ss_pred CcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 157 STGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 157 TSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
|+|||+.++..+++.|+++++..+.|++++.|+ ..++. .+|+|++|++|++++.|+.+++.
T Consensus 168 t~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~-~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 168 TSMLDPRGRREVLETVRQLKEQKGITVLSITHD-LDEAA-QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCCEEEEEecC-HHHHH-cCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999886445666665555 45665 59999999999999999988764
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-23 Score=238.54 Aligned_cols=177 Identities=19% Similarity=0.193 Sum_probs=141.3
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCc------ccceEEEecccc--cccCCCCHHHHHHHHhhccCCCCccchhhhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHD--IHIGEMTVRETLAFSARCQGVGSRYDMLVEL 72 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~------~~~~~~yV~Q~d--~l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~ 72 (1230)
+++|+|.+.. .+|+|.++|.++.... .++.++||+|++ .+.+.+||.+++.+..+.... .
T Consensus 58 l~~l~gl~~p---~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~---------~ 125 (327)
T PRK11308 58 ARLLTMIETP---TGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTS---------L 125 (327)
T ss_pred HHHHHcCCCC---CCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccC---------C
Confidence 4677887653 4899999999886432 246799999997 689999999999876443210 0
Q ss_pred hHHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCc-ccccccccCCccccCcccccchhHHHHHHhcCCcee
Q 000907 73 SRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLD-VCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHAL 151 (1230)
Q Consensus 73 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~-~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~IL 151 (1230)
... +..+.+..+++.+||. +..|..+ +.|||||||||+||+||+.+|+||
T Consensus 126 ~~~------------------------~~~~~~~~~l~~~gL~~~~~~~~p-----~~LSgGq~QRv~iArAL~~~P~lL 176 (327)
T PRK11308 126 SAA------------------------ERREKALAMMAKVGLRPEHYDRYP-----HMFSGGQRQRIAIARALMLDPDVV 176 (327)
T ss_pred CHH------------------------HHHHHHHHHHHHCCCChHHhcCCC-----ccCCHHHHHHHHHHHHHHcCCCEE
Confidence 000 0122467899999996 4666654 469999999999999999999999
Q ss_pred eeeCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 152 FMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 152 lLDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
++||||||||..++.+|++.|+++.+..+. +++.|+|....+...+|+|++|++|++++.|+.+++.
T Consensus 177 ilDEPts~LD~~~~~~i~~lL~~l~~~~g~-til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 177 VADEPVSALDVSVQAQVLNLMMDLQQELGL-SYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999998764444 4556778888999999999999999999999998874
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-23 Score=235.62 Aligned_cols=177 Identities=23% Similarity=0.294 Sum_probs=138.6
Q ss_pred CccccCCcCCCCceeEEEEECCccCCC--C---cccceEEEeccccc-ccCCCCHHHHHHHHhhccCCCCccchhhhhhH
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHE--F---VPQRTAAYISQHDI-HIGEMTVRETLAFSARCQGVGSRYDMLVELSR 74 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~--~---~~~~~~~yV~Q~d~-l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~ 74 (1230)
||+|+|.++ ..+|+|+++|+++.. . ..++.+|||+|++. .+...||+||+.++....+. ..
T Consensus 49 l~~i~Gl~~---p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~----------~~ 115 (283)
T PRK13636 49 FQNLNGILK---PSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKL----------PE 115 (283)
T ss_pred HHHHhcCCC---CCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCC----------CH
Confidence 467888765 358999999998741 1 23467999999863 34457999999986532110 00
Q ss_pred HHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeee
Q 000907 75 REKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMD 154 (1230)
Q Consensus 75 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLD 154 (1230)
.+ ..+.++.+++.+||.+..|+.+ +.||||||||++||+||+.+|+||+||
T Consensus 116 ~~------------------------~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrl~laraL~~~p~lLilD 166 (283)
T PRK13636 116 DE------------------------VRKRVDNALKRTGIEHLKDKPT-----HCLSFGQKKRVAIAGVLVMEPKVLVLD 166 (283)
T ss_pred HH------------------------HHHHHHHHHHHCCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 00 1123678899999998877665 469999999999999999999999999
Q ss_pred CCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHHH
Q 000907 155 EISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 155 EPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|||+|||+.+...+.+.|+++++..|+|+++ ++|..+++...+|++++|++|++++.|+.+++..
T Consensus 167 EPt~gLD~~~~~~l~~~l~~l~~~~g~till-vsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 167 EPTAGLDPMGVSEIMKLLVEMQKELGLTIII-ATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEE-EecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999987644555555 5566778888999999999999999999988743
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-23 Score=228.75 Aligned_cols=179 Identities=21% Similarity=0.266 Sum_probs=137.0
Q ss_pred CccccCCcCCC-CceeEEEEECCccCCCCcc-cceEEEeccccc--ccCCCCHHHHHHHHhhccCCCCccchhhhhhHHH
Q 000907 1 MLALAGKLDSS-LKASGKVTYNGHDMHEFVP-QRTAAYISQHDI--HIGEMTVRETLAFSARCQGVGSRYDMLVELSRRE 76 (1230)
Q Consensus 1 l~~Lag~~~~~-~~~~G~V~vnG~~~~~~~~-~~~~~yV~Q~d~--l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e 76 (1230)
||+|+|..+.. ...+|+|+++|+++..... ++.++||+|++. +.+.+|+.||+.+.....+. ...
T Consensus 29 l~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~----------~~~- 97 (230)
T TIGR02770 29 CLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGK----------LSK- 97 (230)
T ss_pred HHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHHHcCc----------cHH-
Confidence 46788876431 0158999999998764333 357999999974 56778999999876432110 000
Q ss_pred HhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcc---cccccccCCccccCcccccchhHHHHHHhcCCceeee
Q 000907 77 KAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDV---CADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFM 153 (1230)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~---~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlL 153 (1230)
+..+.++.+++.+||++ ..+..+ +.|||||||||+||++|+.+|+|++|
T Consensus 98 -----------------------~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~vllL 149 (230)
T TIGR02770 98 -----------------------QARALILEALEAVGLPDPEEVLKKYP-----FQLSGGMLQRVMIALALLLEPPFLIA 149 (230)
T ss_pred -----------------------HHHHHHHHHHHHcCCCchHHHHhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 00123677899999984 344433 46999999999999999999999999
Q ss_pred eCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 154 DEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 154 DEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||||+|||..+...+.+.|+++++..++|+++ ++|...++...+|++++|++|++++.|+.+++.
T Consensus 150 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii-~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 150 DEPTTDLDVVNQARVLKLLRELRQLFGTGILL-ITHDLGVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999987533555555 555667888999999999999999999988774
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-23 Score=237.51 Aligned_cols=183 Identities=21% Similarity=0.210 Sum_probs=140.0
Q ss_pred CccccCCcCCCC-ceeEEEEECCccCCCCcc-------cceEEEecccc--cccCCCCHHHHHHHHhhccCCCCccchhh
Q 000907 1 MLALAGKLDSSL-KASGKVTYNGHDMHEFVP-------QRTAAYISQHD--IHIGEMTVRETLAFSARCQGVGSRYDMLV 70 (1230)
Q Consensus 1 l~~Lag~~~~~~-~~~G~V~vnG~~~~~~~~-------~~~~~yV~Q~d--~l~~~lTVrEtL~f~a~l~~~~~~~~~~~ 70 (1230)
+++|+|.++... ..+|+|.++|.++..... ++.++||+|++ .+.|.+||.+++....+....
T Consensus 50 ~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~-------- 121 (326)
T PRK11022 50 SLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQG-------- 121 (326)
T ss_pred HHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcC--------
Confidence 367888775322 358999999999864321 13699999997 588999999998765432110
Q ss_pred hhhHHHHhhccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCce
Q 000907 71 ELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHA 150 (1230)
Q Consensus 71 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~I 150 (1230)
... ++.++.++.+|+.+||.+..+. . +...+.|||||||||+||+||+.+|+|
T Consensus 122 -~~~------------------------~~~~~~~~~~L~~~gL~~~~~~-l-~~~p~~LSgGq~QRv~iArAL~~~P~l 174 (326)
T PRK11022 122 -GNK------------------------KTRRQRAIDLLNQVGIPDPASR-L-DVYPHQLSGGMSQRVMIAMAIACRPKL 174 (326)
T ss_pred -CCH------------------------HHHHHHHHHHHHHCCCCChHHH-H-hCCchhCCHHHHHHHHHHHHHHhCCCE
Confidence 000 0112346789999999753211 1 133457999999999999999999999
Q ss_pred eeeeCCCcccchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEEEEcChhhHH
Q 000907 151 LFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 151 LlLDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
|++||||||||..++.+|++.|+++.+..+.| ++.++|....+...+|+|++|++|++++.|+.+++.
T Consensus 175 lilDEPts~LD~~~~~~il~lL~~l~~~~g~t-il~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 175 LIADEPTTALDVTIQAQIIELLLELQQKENMA-LVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999998654555 555667778899999999999999999999998874
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-23 Score=226.06 Aligned_cols=162 Identities=22% Similarity=0.327 Sum_probs=129.1
Q ss_pred CccccCCcCCCCceeEEEEECCccCCCCcccceEEEeccccc-ccCCCCHHHHHHHHhhccCCCCccchhhhhhHHHHhh
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDI-HIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~~~~~~~~~G~V~vnG~~~~~~~~~~~~~yV~Q~d~-l~~~lTVrEtL~f~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
|++|+|..+ ..+|+|+++|.++.....++.++||+|++. .+..+||+||+.++.....
T Consensus 43 l~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~------------------ 101 (205)
T cd03226 43 AKILAGLIK---ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELD------------------ 101 (205)
T ss_pred HHHHhcCCC---CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcC------------------
Confidence 467888765 358999999998754334567999999864 3456799999988643210
Q ss_pred ccCCCchhhHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCCccccCcccccchhHHHHHHhcCCceeeeeCCCcc
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGqKrRvsIA~aL~~~p~ILlLDEPTSG 159 (1230)
...+.++.+++.+||.+..++.++ .||||||||++|||||+.+|++++|||||+|
T Consensus 102 --------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~ 156 (205)
T cd03226 102 --------------------AGNEQAETVLKDLDLYALKERHPL-----SLSGGQKQRLAIAAALLSGKDLLIFDEPTSG 156 (205)
T ss_pred --------------------ccHHHHHHHHHHcCCchhcCCCch-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCcc
Confidence 001135678999999988887664 6999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhcCCEEEEEecCCChhHHhhccceEEecCCeEE
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIV 210 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iiti~qp~~~i~~lfD~I~vL~~G~vv 210 (1230)
||+.++..+.+.|+++++ .++|++++. |...++...+|++++|++|+++
T Consensus 157 LD~~~~~~l~~~l~~~~~-~~~tii~~s-H~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 157 LDYKNMERVGELIRELAA-QGKAVIVIT-HDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCHHHHHHHHHHHHHHHH-CCCEEEEEe-CCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999865 456666554 5556788899999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1230 | ||||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 3e-07 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-07 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 2e-06 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 2e-06 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 2e-06 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 3e-06 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 3e-06 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 9e-04 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 3e-06 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 5e-06 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 6e-06 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 6e-06 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 6e-06 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 6e-06 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 6e-06 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 7e-06 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 3e-05 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-05 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 4e-05 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 4e-04 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 4e-05 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 4e-05 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 6e-05 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 6e-05 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-04 | ||
| 1g29_1 | 372 | Malk Length = 372 | 1e-04 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-04 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-04 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-04 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 3e-04 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 5e-04 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 6e-04 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 7e-04 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 8e-04 |
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1230 | |||
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 2e-24 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 2e-09 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-21 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 3e-05 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 2e-21 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 5e-08 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 1e-20 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 3e-04 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 4e-20 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-12 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-04 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-18 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-13 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 3e-06 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-17 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-12 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 5e-05 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-17 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 4e-10 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-05 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 2e-17 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 7e-08 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 3e-16 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 7e-16 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 1e-15 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 2e-15 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 5e-15 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 2e-04 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 2e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-05 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 8e-10 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 9e-04 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-09 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-09 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 5e-09 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-07 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 7e-09 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 9e-09 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 6e-08 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 6e-08 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 9e-08 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 3e-07 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 3e-07 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 8e-07 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 2e-06 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 4e-06 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 5e-06 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 5e-06 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 9e-06 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 9e-06 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 1e-05 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 1e-05 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 2e-05 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 4e-05 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 4e-05 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 6e-05 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 1e-04 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 3e-04 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 4e-04 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 4e-04 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 5e-04 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 5e-04 |
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 2e-24
Identities = 45/186 (24%), Positives = 78/186 (41%), Gaps = 16/186 (8%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYP--KNQETF 744
L G+S G + L+G G+GKTT + +++ + + +G +T+ G +
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS----SGIVTVFGKNVVEEPHEV 86
Query: 745 TRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQAL 804
++ Y + + E L + A +S E VE E+ L +
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDR 143
Query: 805 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRT 864
V S ++L IA L+ NP + +DEPTSGLD A V + ++ G T
Sbjct: 144 VS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 865 VVCTIH 870
++ + H
Sbjct: 199 ILVSSH 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 39/222 (17%), Positives = 63/222 (28%), Gaps = 79/222 (35%)
Query: 15 SGKVTYNGHDMHE----------FVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGS 64
SG VT G ++ E ++P+ AY M E L F A
Sbjct: 69 SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAY--------RNMQGIEYLRFVAGFYA--- 117
Query: 65 RYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGD 124
S E + + ++ L
Sbjct: 118 -------SSSSEIEEMV------------------------ERATEIAGL-----GEKIK 141
Query: 125 EMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFN-------- 176
+ + S G +++ L+ +DE ++GLD + L Q +
Sbjct: 142 DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILV 201
Query: 177 --HILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLE 216
H + EV L D I L+ +G IV G +E
Sbjct: 202 SSHNM------------LEVEFLCDRIALIHNGTIVETGTVE 231
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 1e-21
Identities = 47/195 (24%), Positives = 82/195 (42%), Gaps = 25/195 (12%)
Query: 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKN 740
+ L ++ G + A++G G GK+TL+D+L G R +G I
Sbjct: 15 QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI------------ 62
Query: 741 QETFTRISGYCEQNDIHSPYVTVYESLLY--SAWLRLSSEVNSKTREMFVEEVMELVELN 798
E + I G+ Q +V + +L S + ++ S ++ + ++ + L
Sbjct: 63 -EVYQSI-GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQV-AMQALDYLNLT 119
Query: 799 PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN- 857
L + LS QR+ + IA + + +I +DEPTS LD +V+ + +
Sbjct: 120 HLAKREF-----TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDL 174
Query: 858 TVDTGRTVVCTIHQP 872
TVV T HQP
Sbjct: 175 AQSQNMTVVFTTHQP 189
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 18/125 (14%), Positives = 43/125 (34%), Gaps = 11/125 (8%)
Query: 96 REGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDE 155
+ + L L+L A +SGGQR+ + + + +DE
Sbjct: 100 KPKSHDYQVAMQALDYLNLTHLAKREFTS-----LSGGQRQLILIARAIASECKLILLDE 154
Query: 156 ISTGLDSSTTFHIVNSLGQFNHILNGTALISL--LQPAPEVYNLFDDIILVSDGQIVYQG 213
++ LD + +++ L N T + + + + +L++ + G
Sbjct: 155 PTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAI---ANKTLLLNKQNFKF-G 210
Query: 214 PLEHV 218
++
Sbjct: 211 ETRNI 215
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 2e-21
Identities = 37/186 (19%), Positives = 77/186 (41%), Gaps = 22/186 (11%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT---GNITISGYPKNQETFT 745
L ++ G + G G GKTTL+ ++ Y+ G I +G P +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTIST-----YLKPLKGEIIYNGVP-ITKVKG 78
Query: 746 RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALV 805
+I + + I ++V + L A L K + + + +E VE+ L++
Sbjct: 79 KI-FFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK-- 130
Query: 806 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV-DTGRT 864
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G
Sbjct: 131 ----LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 186
Query: 865 VVCTIH 870
++ +
Sbjct: 187 IISSRE 192
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 5e-08
Identities = 25/205 (12%), Positives = 56/205 (27%), Gaps = 61/205 (29%)
Query: 15 SGKVTYNGHDMHE------FVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDM 68
G++ YNG + + F+P+ +++V + L A GV
Sbjct: 63 KGEIIYNGVPITKVKGKIFFLPEEIIVP--------RKISVEDYLKAVASLYGV------ 108
Query: 69 LVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLR 128
+ +I L+ +++ +
Sbjct: 109 ------KVNKNEI------------------------MDALESVEVLDLKKKL------G 132
Query: 129 GISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLL 188
+S G +RV L+ A +D+ +D + ++ S+ + + S
Sbjct: 133 ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS-- 190
Query: 189 QPAPEVYNLFDDIILVSDGQIVYQG 213
E + D +
Sbjct: 191 ---REELSYCDVNENLHKYSTKIDK 212
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 91.5 bits (228), Expect = 1e-20
Identities = 38/192 (19%), Positives = 69/192 (35%), Gaps = 24/192 (12%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG-RKTRGYIT-GNITISGYPKNQETFT 745
L +SG R G + L+G G+GK+TL+ +AG +G I + + +
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK--LA 72
Query: 746 RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALV 805
Y Q V+ L KTR + +V + L+
Sbjct: 73 LHRAYLSQQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGALALDDKLGRST 124
Query: 806 GLPGVNGLSTEQRKRLTIA-------VELVANPSIIFMDEPTSGLDARAAAVVMRTVRNT 858
N LS + +R+ +A + ++ +DEP + LD + + + +
Sbjct: 125 -----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 179
Query: 859 VDTGRTVVCTIH 870
G +V + H
Sbjct: 180 SQQGLAIVMSSH 191
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 38/243 (15%), Positives = 64/243 (26%), Gaps = 88/243 (36%)
Query: 5 AGKLDSSL--------KASGKVTYNGHDMHEFVPQRTA---AYISQHDIHIGEMTVRETL 53
AGK S+L G + + G + + + A AY+SQ V
Sbjct: 37 AGK--STLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWH-- 92
Query: 54 AFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLD 113
+ L + ++ + + L
Sbjct: 93 ---------------YLTLHQ-------HDKTR-----TELLND----------VAGALA 115
Query: 114 LDVCADTVVGDEMLRGISGGQRKRV--------TTGEMLVGPAHALFMDEISTGLDSSTT 165
LD +SGG+ +RV T + L +DE LD +
Sbjct: 116 LDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQITPQANPAG-QLLLLDEPMNSLDVAQQ 169
Query: 166 FHIVNSLGQFN----------HILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPL 215
+ L + H LN T + L+ G+++ G
Sbjct: 170 SALDKILSALSQQGLAIVMSSHDLNHTLRHA------------HRAWLLKGGKMLASGRR 217
Query: 216 EHV 218
E V
Sbjct: 218 EEV 220
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 4e-20
Identities = 43/224 (19%), Positives = 80/224 (35%), Gaps = 35/224 (15%)
Query: 652 MVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLV------LLNGVSGAFRPGVLTALM 705
L F +L F + D+ + R L +LN G F + +M
Sbjct: 325 ENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMM 384
Query: 706 GVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTV 763
G G+GKTTL+ +LAG + G + +S P+ TV
Sbjct: 385 GENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQK-------IAPKFPG-------TV 430
Query: 764 YESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTI 823
+ + + F +V++ + ++ + V LS + +R+ I
Sbjct: 431 RQLFFKKIRGQFLNP-------QFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAI 478
Query: 824 AVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV-DTGRTVV 866
+ L I +DEP++ LD+ + + +R + +T
Sbjct: 479 VLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 3e-12
Identities = 36/183 (19%), Positives = 71/183 (38%), Gaps = 21/183 (11%)
Query: 697 RPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNIT---ISGYPKNQETFTRISGYC 751
RPG + L+G G GK+T + +LAG + G I Y + E +
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 752 EQND---IHSPYV-----TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQA 803
E + I YV + + L ++ + V+ +++++L + +
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELL---KLRMEKSPEDVKRYIKILQLENVLKR 217
Query: 804 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGR 863
+ LS + +R I + V + DEP+S LD + + +R+ + +
Sbjct: 218 -----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTK 272
Query: 864 TVV 866
V+
Sbjct: 273 YVI 275
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 40/185 (21%), Positives = 60/185 (32%), Gaps = 30/185 (16%)
Query: 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGG 133
+ +K A P +F K + + TD ++K L +D D V +SGG
Sbjct: 418 KPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTD-VVKPLRIDDIIDQEVQH-----LSGG 471
Query: 134 QRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALI-----SLL 188
+ +RV L PA +DE S LDS + +F TA I +
Sbjct: 472 ELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIM- 530
Query: 189 QPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQE--VTSRK 246
L D +I+ G FL+ VT R+
Sbjct: 531 -----ATYLADKVIVFEGIPSKNAHARAPES-----------LLTGCNRFLKNLNVTFRR 574
Query: 247 DQEQY 251
D +
Sbjct: 575 DPNSF 579
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 2e-18
Identities = 53/240 (22%), Positives = 97/240 (40%), Gaps = 35/240 (14%)
Query: 631 RNSSSQSRETTIETDQPKNRGMVLPFEPFSLTFD-EITYSVDMPQEMKRRGVHDDKLVLL 689
RN ++ + ++ + + R + F S D E V+ P+ +K G L
Sbjct: 318 RNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSF-----KL 372
Query: 690 NGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTRI 747
G R G + ++G G GKTT + +LAG T G + ++T++ P+ I
Sbjct: 373 EVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQ------YI 426
Query: 748 SGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGL 807
TVYE L + + + E+++ + + L V
Sbjct: 427 K--------AEYEGTVYELLS-------KIDSSKLNSNFYKTELLKPLGIIDLYDRNVE- 470
Query: 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVV 866
LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T +
Sbjct: 471 ----DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 2e-13
Identities = 48/212 (22%), Positives = 91/212 (42%), Gaps = 18/212 (8%)
Query: 663 FDEITYSVDMPQEMKRRGVH--DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLA 720
F+ I+ V++P+++ VH +L + + G++ ++G G+GKTT + +LA
Sbjct: 81 FNAISI-VNLPEQLDEDCVHRYGVNAFVLYRLPI-VKDGMVVGIVGPNGTGKTTAVKILA 138
Query: 721 GR----KTRGYITGNITISGYPKN--QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLR 774
G+ + + I + N Q F R+ + + YV + + +
Sbjct: 139 GQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKG---K 195
Query: 775 LSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSII 834
+ + EEV++ +EL + + LS + +R+ IA L+
Sbjct: 196 VRELLKKVDEVGKFEEVVKELELENVLDRELHQ-----LSGGELQRVAIAAALLRKAHFY 250
Query: 835 FMDEPTSGLDARAAAVVMRTVRNTVDTGRTVV 866
F DEP+S LD R V R +R + G+ V+
Sbjct: 251 FFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 3e-06
Identities = 34/173 (19%), Positives = 61/173 (35%), Gaps = 26/173 (15%)
Query: 84 DADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEM 143
++ K + T+ +LK L + D V D +SGG+ +RV
Sbjct: 432 GTVYELLSKIDSSKLNSNFYKTE-LLKPLGIIDLYDRNVED-----LSGGELQRVAIAAT 485
Query: 144 LVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTAL-IS--LLQPAPEVYNLFDD 200
L+ A +DE S LD + ++ TAL + + + + D
Sbjct: 486 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-----LMIDYVSD 540
Query: 201 IILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQE--VTSRKDQEQY 251
++V +G+ G R+G+ FL +T R+D +
Sbjct: 541 RLIVFEGEPGRHG---RALPPM-------GMREGMNRFLASVGITFRRDPDSG 583
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 1e-17
Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 29/181 (16%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTR 746
L G + G + ++G G GKTT + +LAG T G I ++T++ K Q
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA--YKPQ----Y 355
Query: 747 ISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVG 806
I TVYE L + + + E+++ + + L V
Sbjct: 356 IK--------ADYEGTVYELLS-------KIDASKLNSNFYKTELLKPLGIIDLYDREV- 399
Query: 807 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTV 865
N LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T
Sbjct: 400 ----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 455
Query: 866 V 866
+
Sbjct: 456 L 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 1e-12
Identities = 45/208 (21%), Positives = 83/208 (39%), Gaps = 42/208 (20%)
Query: 677 KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGR----KTRGYITGNI 732
R GV+ L L V + G++ ++G G+GK+T + +LAG+ + +
Sbjct: 29 HRYGVNAFVLYRLPVV----KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDG 84
Query: 733 TISGYPKN--QETFTRISGYCEQNDIH----SPYVTVYESLLYSAWLRLSSEVNSKTREM 786
I + N Q F ++ +I YV ++ K +
Sbjct: 85 VIRAFRGNELQNYFEKLKN----GEIRPVVKPQYV----------------DLIPKAVKG 124
Query: 787 FVEEVMELVELNPLRQALVGLPGVNG--------LSTEQRKRLTIAVELVANPSIIFMDE 838
V E+++ + + +V + LS + +R+ IA L+ N + F DE
Sbjct: 125 KVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDE 184
Query: 839 PTSGLDARAAAVVMRTVRNTVDTGRTVV 866
P+S LD R R +R + G++V+
Sbjct: 185 PSSYLDIRQRLNAARAIRRLSEEGKSVL 212
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 5e-05
Identities = 33/169 (19%), Positives = 61/169 (36%), Gaps = 26/169 (15%)
Query: 88 DVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGP 147
++ K + T+ +LK L + D V + +SGG+ +RV L+
Sbjct: 366 ELLSKIDASKLNSNFYKTE-LLKPLGIIDLYDREVNE-----LSGGELQRVAIAATLLRD 419
Query: 148 AHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTAL-IS--LLQPAPEVYNLFDDIILV 204
A +DE S LD + ++ TAL + + + + D ++V
Sbjct: 420 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-----LMIDYVSDRLMV 474
Query: 205 SDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQE--VTSRKDQEQY 251
+G+ G R+G+ FL +T R+D +
Sbjct: 475 FEGEPGKYGRALPPM----------GMREGMNRFLASIGITFRRDPDTG 513
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 2e-17
Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 27/230 (11%)
Query: 642 IETDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVL 701
+ + K R + F ++ +++ + + + L+ +G + G +
Sbjct: 238 LPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVV-DNGEAKEGEI 296
Query: 702 TALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSP 759
++G G GKTT +L G G +T I Y K Q F +
Sbjct: 297 IGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIFP------------NY 343
Query: 760 YVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 819
TV + +L +S+ T F EEV + + L+ L ++ V N LS + +
Sbjct: 344 DGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQ 392
Query: 820 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTI 869
+L IA L + +D+P+S LD +V + ++ + V I
Sbjct: 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFII 442
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 4e-10
Identities = 39/183 (21%), Positives = 74/183 (40%), Gaps = 19/183 (10%)
Query: 697 RPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETF--TRISGY---- 750
+ + ++G G GKTT++ +LAG + N + G + + F I Y
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKV-GKDEVLKRFRGKEIYNYFKEL 81
Query: 751 --CEQNDIHSPYVTVYESLLYSAWLR-LSSEVNSKTREMFVEEVMELVELNPLRQALVGL 807
E +H Y S + + ++++ + + +EV EL+ + L
Sbjct: 82 YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGK---KDEVKELLNMTNLWN----- 133
Query: 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVC 867
N LS +RL +A L+ + D+P+S LD R + + +R + + V+
Sbjct: 134 KDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIV 192
Query: 868 TIH 870
H
Sbjct: 193 VDH 195
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 1e-05
Identities = 33/187 (17%), Positives = 70/187 (37%), Gaps = 26/187 (13%)
Query: 71 ELSRREKAAKIIPDADIDVFMKAVVREGQEANV-ITDYILKVLDLDVCADTVVGDEMLRG 129
LS + + D + +++ ++ + + + K L+L ++ V D
Sbjct: 331 ILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVND----- 385
Query: 130 ISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTAL-IS-- 186
+SGG+ +++ L A +D+ S+ LD + + ++ + I
Sbjct: 386 LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD 445
Query: 187 LLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQE--VTS 244
L +++ D I+V G+ G + G+ +FL+E VT
Sbjct: 446 L-----SIHDYIADRIIVFKGEPEKAGLATSPVTL----------KTGMNEFLRELEVTF 490
Query: 245 RKDQEQY 251
R+D E
Sbjct: 491 RRDAETG 497
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 2e-17
Identities = 45/256 (17%), Positives = 100/256 (39%), Gaps = 41/256 (16%)
Query: 641 TIETDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGV 700
+ + G+V + D+I + + +L +S G
Sbjct: 2 SSHHHHHHSSGLVPRGSHMLIQLDQIG---------RMKQ----GKTILKKISWQIAKGD 48
Query: 701 LTALMGVTGSGKTTLMDVLAGR--KTRGYITGNITISGYPKNQETFT------RISGYCE 752
L G+ G+GKTTL+++L T +G + + G + ++ I G+
Sbjct: 49 KWILYGLNGAGKTTLLNILNAYEPAT----SGTVNLFGKMPGKVGYSAETVRQHI-GFVS 103
Query: 753 QNDIHSPY---VTVYESLL--YSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGL 807
+ + V + ++ + + +++ + R ++++LV ++ Q +G
Sbjct: 104 H-SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNE-AHQLLKLVGMSAKAQQYIG- 160
Query: 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVR--NTVDTGRTV 865
LST +++R+ IA L+ P ++ +DEP +GLD A ++ + + +
Sbjct: 161 ----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAM 216
Query: 866 VCTIHQPSIDIFEAFD 881
+ H +I F
Sbjct: 217 IYVTHFIE-EITANFS 231
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 7e-08
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 11/133 (8%)
Query: 96 REGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDE 155
E +LK++ + A +G +S G+++RV L+G L +DE
Sbjct: 133 DIDDEIRNEAHQLLKLVGMSAKAQQYIGY-----LSTGEKQRVMIARALMGQPQVLILDE 187
Query: 156 ISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPL 215
+ GLD +++ L + A+I + E+ F I+L+ DGQ + QG +
Sbjct: 188 PAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAV 247
Query: 216 ------EHVEQFF 222
E++ +FF
Sbjct: 248 EDILTSENMSRFF 260
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 3e-16
Identities = 36/188 (19%), Positives = 70/188 (37%), Gaps = 32/188 (17%)
Query: 698 PGVLTALMGVTGSGKTTLMDVLAG-RKTRGYIT-GNITISGYPKNQETFTRISGYCEQND 755
G ++G GSGKTTL+ ++G G I + + R S +
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYI----RYSTNLPEA- 83
Query: 756 IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL---RQALVGLPGVNG 812
+ VTV + + L+ E+++ ++L R+ +
Sbjct: 84 -YEIGVTVNDIVYLYEELK-------GLDRDLFLEMLKALKLGEEILRRK-------LYK 128
Query: 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQP 872
LS Q + ++ L + P I+ +DEP +DA V+ R ++ + G+ + H
Sbjct: 129 LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTH-- 183
Query: 873 SIDIFEAF 880
++
Sbjct: 184 --ELDMLN 189
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 7e-16
Identities = 48/191 (25%), Positives = 76/191 (39%), Gaps = 24/191 (12%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTR 746
L VS G + G TGSGK+TL+ ++AG T G ++ G K R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG----DVLYDGERKKGYEIRR 78
Query: 747 ISGYCEQNDIHSP-----YVTVYESLLYSAW-LRLSSEVNSKTREMFVEEVMELVELNPL 800
G Q P V++ + ++ + V++ ME V L+
Sbjct: 79 NIGIAFQY----PEDQFFAERVFDEVAFAVKNFYPDRDPVPL-----VKKAMEFVGLDF- 128
Query: 801 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD 860
+ LS +++R+ IA +V P I+ +DEP GLD ++R V
Sbjct: 129 -DSFKDRV-PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT 186
Query: 861 TGRTVVCTIHQ 871
G+TV+ H
Sbjct: 187 LGKTVILISHD 197
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 1e-15
Identities = 45/204 (22%), Positives = 80/204 (39%), Gaps = 39/204 (19%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRG-YITGNITISGYPKNQETFT 745
L G+S + + G +++G +GSGK+TL+ +L T G + + + +
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLL 79
Query: 746 R---ISGYCEQ--NDIHSPYVTVYES----LLYSAWLRLSSEVNSKTREMFVEEVMELVE 796
R + G+ Q I P +T E+ +L K + E ++ +
Sbjct: 80 RNRKL-GFVFQFHYLI--PELTALENVIVPMLKM-------GKPKKEAKERGEYLLSELG 129
Query: 797 LN------PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAV 850
L P LS +++R+ IA L P ++F DEPT LD+
Sbjct: 130 LGDKLSRKP-----------YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKR 178
Query: 851 VMRTVRNTVDTGRTVVCTIHQPSI 874
VM + G ++V H+ +
Sbjct: 179 VMDIFLKINEGGTSIVMVTHEREL 202
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 2e-15
Identities = 55/205 (26%), Positives = 99/205 (48%), Gaps = 24/205 (11%)
Query: 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRG-YITGNITISGYPK 739
++ + L V+ + G ++MG +GSGK+T+++++ + T G NI +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 740 NQETFTR---ISGYCEQ--NDIHSPYVTVYES----LLYSAWLRLSSEVNSKTREMFVEE 790
++ T R I G+ Q N I P +T E+ L++ + ++ + R E
Sbjct: 75 DELTKIRRDKI-GFVFQQFNLI--PLLTALENVELPLIF----KYRGAMSGEERRKRALE 127
Query: 791 VMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAV 850
+++ EL R A P N LS Q++R+ IA L NP II D+PT LD++
Sbjct: 128 CLKMAELEE-RFAN-HKP--NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEK 183
Query: 851 VMRTVRN-TVDTGRTVVCTIHQPSI 874
+M+ ++ + G+TVV H ++
Sbjct: 184 IMQLLKKLNEEDGKTVVVVTHDINV 208
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 5e-15
Identities = 48/195 (24%), Positives = 85/195 (43%), Gaps = 27/195 (13%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFT 745
L G++ + G +TA++G G GK+TL G + + G I N I K
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 746 RISGYCEQNDIHSP-----YVTVYESLLYSAW-LRLSSEVNSKTREMF--VEEVMELVEL 797
G Q+ P +VY+ + + A ++L + E+ V+ ++ +
Sbjct: 84 ESIGIVFQD----PDNQLFSASVYQDVSFGAVNMKLPED------EIRKRVDNALKRTGI 133
Query: 798 NPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN 857
L+ + LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ +
Sbjct: 134 EHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE 188
Query: 858 -TVDTGRTVVCTIHQ 871
+ G T++ H
Sbjct: 189 MQKELGITIIIATHD 203
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 10/117 (8%)
Query: 131 SGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALIS---L 187
S GQ+KRV +LV L +DE + GLD I+ L + L T +I+ +
Sbjct: 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI 204
Query: 188 LQPAPEVYNLFDDIILVSDGQIVYQGPLEHV---EQFFISMGFKCPKRKGIADFLQE 241
V D++ ++ +G+++ QG + V ++ + + P+ + + L+E
Sbjct: 205 ----DIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILKE 257
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 2e-14
Identities = 50/203 (24%), Positives = 80/203 (39%), Gaps = 37/203 (18%)
Query: 686 LVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQ- 741
L+GVS + G +T ++G GSGK+TL++V+ G + G + N I+ +
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
Query: 742 ------ETFTRISGYCEQNDIHS-PYVTVYE-----------SLLYSAWLRLSSEVNSKT 783
TF Q +TV E S L S + + +
Sbjct: 80 YHYGIVRTF--------QT-PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM 130
Query: 784 REMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 843
E +++E ++L+ L G LS Q K + I L+ NP +I MDEP +G+
Sbjct: 131 VEK-AFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
Query: 844 DARAAAVVMRTVRNTVDTGRTVV 866
A + V G T +
Sbjct: 185 APGLAHDIFNHVLELKAKGITFL 207
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.1 bits (168), Expect = 7e-12
Identities = 85/547 (15%), Positives = 155/547 (28%), Gaps = 176/547 (32%)
Query: 621 RSESRDYVRRRNSSSQSRETTIETDQPKNRGMVLPFEPFSLTFDEITYSVDMPQEMKRRG 680
++E R + R+ +Q F Y+V Q +
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQV--------FAK---------YNVSRLQPYLKL- 140
Query: 681 VHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTL-MDVLAGRKTRGYITGNI---TISG 736
+ LL RP + GV GSGKT + +DV K + + I +
Sbjct: 141 ----RQALLE-----LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 737 YPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVE 796
+ + Q D P T + LR+ S R L++
Sbjct: 192 CNSPETVLEMLQKLLYQID---PNWTSRSDHSSNIKLRIHSIQAELRR---------LLK 239
Query: 797 LNPLRQALVGLPGVNG-------------LSTEQRKRLTIAVELVANPSIIFMDEPTSGL 843
P L+ L V L T + K++T + A + I +D + L
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS-AATTTHISLDHHSMTL 298
Query: 844 -DARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDAGIPGVSKIRDGYNPATWMLE 902
+++++ + V T + + I IRDG ATW
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES---------IRDG--LATW--- 344
Query: 903 VTAPSQEIALGVDFAAIYKSSELYRINKALIQELSKPAPGSKELYFANQYPLSFF----- 957
D +L I ++ + L +PA ++++ LS F
Sbjct: 345 ------------DNWKHVNCDKLTTIIESSLNVL-EPA-EYRKMFDR----LSVFPPSAH 386
Query: 958 --TQCMACLWKQ-------------HWSYS---RNP------------------------ 975
T ++ +W H YS + P
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLH-KYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 976 ------HYTAVR--FLFTIFISLIFGTMFWDMG--TKTTKQQDLFNTMGFMYVAVYFLGV 1025
HY + + + + +G K + + +++ FL
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 1026 ------LNVSSVQPVVD-LERSVFYREKGAGMYSPMAYAFAQVLIEIPYIFVQAAPYSLI 1078
++ +++ L++ FY+ PYI Y +
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYK---------------------PYICDNDPKYERL 544
Query: 1079 VYAMIGF 1085
V A++ F
Sbjct: 545 VNAILDF 551
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.6 bits (151), Expect = 8e-10
Identities = 96/643 (14%), Positives = 184/643 (28%), Gaps = 224/643 (34%)
Query: 32 RTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAKIIPDADIDVF- 90
T YI Q D + V F+ V SR ++L R+ ++ P ++ +
Sbjct: 108 MTRMYIEQRDRLYNDNQV-----FAKY--NV-SRLQPYLKL--RQALLELRPAKNVLIDG 157
Query: 91 MKAVVREGQEANVITDYILK-VLDLDVCADTVVGDEMLRGI---SGGQRKRVTTG-EMLV 145
+ G K + LDVC V +M I + T EML
Sbjct: 158 VLGS---G-----------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 146 GPAHALFMDEISTGLDSSTTFHIVNSL-GQFNHILNGTALISLLQPAPEVYNLFDDIILV 204
+ + + S SS ++S+ + +L +P + + V
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL-------KSKPYENCLLVLLN---V 253
Query: 205 SDGQIVYQGPLEHVEQFFISMGFKCP-----KRKGIADFLQEVTSRKDQEQYWVRNDEPY 259
+ + F C + K + DFL T+ + D
Sbjct: 254 QNA--------KAWNAF----NLSCKILLTTRFKQVTDFLSAATTTH------ISLDHHS 295
Query: 260 RFVTVKEFVHAFQSFHVGRKLGDELGIPFDKKNSHPAALTTRKYGVGKKELLKACFSREH 319
+T E + + + D +P + ++P L+ + E + R+
Sbjct: 296 MTLTPDEVKSLLLKY-LDCRPQD---LPREVLTTNPRRLSI----IA--ESI-----RDG 340
Query: 320 LLMKRNSFVYIFRLTQVMFLAVIGMTIFLRTKMHRDSLTDGVIYTGALFFILTTITFNGM 379
L + D LTTI
Sbjct: 341 L---------------------------ATWDNWKHVNCDK----------LTTI----- 358
Query: 380 AEISMTIAKL-PVFYKQR--DLRFYPSWAYALPAWILKIPISIVEVSVWVFMTYYVIGFD 436
I ++ L P Y++ L +P A IP ++ + +W + +
Sbjct: 359 --IESSLNVLEPAEYRKMFDRLSVFPPSA--------HIPTILLSL-IWFDVIKSDV--- 404
Query: 437 SNAGRFFKQYLLLLIVNQMSSAMFRLIAAVGRSMVVANTFGSLVLL--LLFVLGGFVLSR 494
+++VN++ S+V S + + + L +
Sbjct: 405 ------------MVVVNKLHK----------YSLVEKQPKESTISIPSIYLEL---KVKL 439
Query: 495 DDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKILPNKTKPLGIEVLDSRGFFTDAYW 554
++ YA + +V+ + N K + P + D Y+
Sbjct: 440 EN--------------EYALHRSIVDHY--NIPKTFDSDDLIPPYL----------DQYF 473
Query: 555 YW-LG--------VGALTGFIILFQ-FGF--------TLA-------LSFLNPFGTSKAF 589
Y +G +T F ++F F F + A L+ L K +
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 590 ISEESQSTEHDSRTGGTVQ--LSTCANSSSHITRSESRDYVRR 630
I + + R + L ++ S+ D +R
Sbjct: 534 ICD---NDPKYERLVNAILDFLPKIE---ENLICSKYTDLLRI 570
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 7e-09
Identities = 97/653 (14%), Positives = 179/653 (27%), Gaps = 179/653 (27%)
Query: 204 VSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFLQEVTSRKDQEQ-YWVRNDEP--YR 260
+ Q Y+ L E F+ F C K + D + + S+++ + ++ R
Sbjct: 11 TGEHQYQYKDILSVFEDAFVD-NFDC---KDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 261 FVTV-----KEFVHAFQSFHVGRKLGDE---LGIPFDKKNSHPAALTT-------RKYGV 305
+E V F V L L P + P+ +T R Y
Sbjct: 67 LFWTLLSKQEEMVQKF----VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 306 GKKELLKACFSREHLLMK-RNSFVYIFRLTQVMFLAVIGMTIF---------LRTKMHRD 355
+ K SR +K R + + L + + G+ + +
Sbjct: 123 NQV-FAKYNVSRLQPYLKLRQA---LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 356 SLTDGVIYTGALFFILTTITFNGMAEISMTIAKLPVFYKQRDLRFYPSWAYALPAWILKI 415
+ + + + + L Q D P+W + I
Sbjct: 179 KMDFKIFW----------LNLKNCNSPETVLEMLQKLLYQID----PNWT-SRSDHSSNI 223
Query: 416 PISIVEVSVWVFMTYYVIGFDSNAGRFFKQYLL---LLIVNQMSSAMFRLIAAVG-RSMV 471
+ I + + R K LL++ + +A + A +
Sbjct: 224 KLRIHSIQAEL-------------RRLLKSKPYENCLLVLLNVQNA--KAWNAFNLSCKI 268
Query: 472 VANTFGSLVLLLLFVLGGFVLSRDDIKKWWKWGYWCSPLMYAQNAIVVNEFLGNSWKKIL 531
+ T V L +S D L + ++ ++L + L
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSM---------TLTPDEVKSLLLKYLDCRPQD-L 318
Query: 532 PN---KTKPLGIEV---LDSRGFFTDAYWYWLGVGALTGFIILFQFGFTLALSFLNPFGT 585
P T P + + G T W + LT I L+ L P
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS-------LNVLEPAEY 371
Query: 586 SKAF-----------ISEE------SQSTEHDSRTGGTVQLSTCANSSSHITRSESRDYV 628
K F I + D V ++ S V
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM----VVVNKLHKYSL----------V 417
Query: 629 RRRNSSSQSR--------ETTIETDQPKNRGMV----LP--FEPFSLT--------FDEI 666
++ S + +E + +R +V +P F+ L + I
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 667 TY---SVDMPQEMKR-RGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGR 722
+ +++ P+ M R V D + R + +GS TL + +
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLD----FRFLEQKIRHD--STAWNASGSILNTLQQL---K 528
Query: 723 KTRGYITGNITISGYPKNQETFTR-ISGY------CEQNDIHSPYVTVYESLL 768
+ YI N + R ++ E+N I S Y + L
Sbjct: 529 FYKPYIC---------DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 2e-05
Identities = 57/376 (15%), Positives = 108/376 (28%), Gaps = 115/376 (30%)
Query: 18 VTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 77
+T + +F+ T +IS + +T E + + + R L +
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMT-LTPDEVKSLLLKY--LDCRPQDL-----PRE 321
Query: 78 AAKIIPDADIDVFMKAVVREGQEANVITDYILKVLD------LDVCADTVVGDEMLRGIS 131
P + + +R+G D V ++ + + E
Sbjct: 322 VLTTNPRR-LSII-AESIRDG---LATWDNWKHVNCDKLTTIIESSLNVLEPAEY----- 371
Query: 132 GGQRKRVTTGEMLVGPAHALFMDE--ISTGL--------DSSTTFHIVNSLGQFNHILNG 181
RK + L ++F I T L S +VN L ++
Sbjct: 372 ---RKMF---DRL-----SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY------ 414
Query: 182 TALISLL--QPAPEVYNLFDDIILVSDGQIVYQGPLEH---VEQFFISMGFKCPKRKGIA 236
SL+ QP ++ I L ++ + L H V+ + I F
Sbjct: 415 ----SLVEKQPKESTISI-PSIYLELKVKLENEYAL-HRSIVDHYNIPKTFDSD------ 462
Query: 237 DFLQEVTSRKDQEQYW-------VRNDEPYRFVTVKEFVHAFQSFH-VGRKLGDELGIPF 288
D +QY+ ++N E + F F F + +K+ + +
Sbjct: 463 DL-----IPPYLDQYFYSHIGHHLKNIEHPE--RMTLFRMVFLDFRFLEQKIRHD-STAW 514
Query: 289 DKKNSHPAALTT-RKYGVGKKELLKAC--FSR-------------EHL------------ 320
+ S L + Y K + + R E+L
Sbjct: 515 NASGSILNTLQQLKFY---KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
Query: 321 LMKRNSFVYIFRLTQV 336
LM + ++ QV
Sbjct: 572 LMAEDEAIFEEAHKQV 587
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 8e-10
Identities = 56/203 (27%), Positives = 89/203 (43%), Gaps = 47/203 (23%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY-ITGNITISGYPKNQETFTRI 747
L ++ G AL+G TGSGK+T+ +L R Y G+I I G KN + R
Sbjct: 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLL----YRFYDAEGDIKIGG--KNVNKYNRN 89
Query: 748 S-----GYCEQ-----NDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL 797
S G Q N+ T+ ++LY +L + T E EV++ +
Sbjct: 90 SIRSIIGIVPQDTILFNE------TIKYNILYG---KLDA-----TDE----EVIKATKS 131
Query: 798 NPLRQALVGLP----------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 847
L + LP G+ LS +R+R+ IA L+ +P I+ DE TS LD++
Sbjct: 132 AQLYDFIEALPKKWDTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT 190
Query: 848 AAVVMRTVRNTVDTGRTVVCTIH 870
+ + V + + RT++ H
Sbjct: 191 EYLFQKAVED-LRKNRTLIIIAH 212
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 9e-04
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 19/102 (18%)
Query: 119 DTVVGDEMLRGI--SGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFN 176
DT+VG+ +G+ SGG+R+R+ L+ + DE ++ LDS T + ++
Sbjct: 146 DTIVGN---KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR 202
Query: 177 HILNGTALI-----SLLQPAPEVYNLFDDIILVSDGQIVYQG 213
N T +I S + A + IIL++ G+IV +G
Sbjct: 203 K--NRTLIIIAHRLSTISSA-------ESIILLNKGKIVEKG 235
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 1e-09
Identities = 52/210 (24%), Positives = 87/210 (41%), Gaps = 48/210 (22%)
Query: 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY--ITGNITISGYPKN 740
D L VS PG AL+G +G+GK+T++ +L R Y +G I I G ++
Sbjct: 64 ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF----RFYDISSGCIRIDG--QD 117
Query: 741 QETFTRIS-----GYCEQ-----NDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEE 790
T+ S G Q ND T+ +++ Y R+++ + E
Sbjct: 118 ISQVTQASLRSHIGVVPQDTVLFND------TIADNIRYG---RVTA-----GND----E 159
Query: 791 VMELVELNPLRQALVGLP----------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 840
V + + A++ P G+ LS +++R+ IA ++ P II +DE T
Sbjct: 160 VEAAAQAAGIHDAIMAFPEGYRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEAT 218
Query: 841 SGLDARAAAVVMRTVRNTVDTGRTVVCTIH 870
S LD + ++ V RT + H
Sbjct: 219 SALDTSNERAIQASL-AKVCANRTTIVVAH 247
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 2e-09
Identities = 35/163 (21%), Positives = 62/163 (38%), Gaps = 28/163 (17%)
Query: 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRI 747
LLN + + G G GK+TLM +A + G+ T + T
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPT--------QEECRT---- 497
Query: 748 SGYCEQN-DIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVG 806
Y E + D +V + + E T+E +++ + A+
Sbjct: 498 -VYVEHDIDGTHSDTSVLDFV---------FESGVGTKEA-IKDKLIEFGFTDEMIAMP- 545
Query: 807 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 849
++ LS + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 546 ---ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 5e-09
Identities = 54/200 (27%), Positives = 84/200 (42%), Gaps = 34/200 (17%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY--ITGNITISGYP---KNQET 743
L G++ + G AL+G +G GK+T + ++ R Y + G ++I G N
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLM----QRLYDPLDGMVSIDGQDIRTINVRY 461
Query: 744 FTRISGYCEQNDIHSPYV---TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 800
I G Q P + T+ E++ Y T + +E+ ++
Sbjct: 462 LREIIGVVSQE----PVLFATTIAENIRYGR--------EDVTMDE-IEKAVKEANAYDF 508
Query: 801 RQAL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMR 853
L VG G LS Q++R+ IA LV NP I+ +DE TS LD + AVV
Sbjct: 509 IMKLPHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQA 567
Query: 854 TVRNTVDTGRTVVCTIHQPS 873
+ GRT + H+ S
Sbjct: 568 ALDK-AREGRTTIVIAHRLS 586
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 1e-07
Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 46/204 (22%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY--ITGNITISGYP---KNQET 743
L G+S + G AL+G +G GK+T++ +L R Y + G++ + G N +
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE----RFYDPMAGSVFLDGKEIKQLNVQW 1104
Query: 744 FTRISGYCEQNDIHSPYV---TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 800
G Q P + ++ E++ Y R+ S EE++
Sbjct: 1105 LRAQLGIVSQE----PILFDCSIAENIAYGDNSRVVSY----------EEIVRA-----A 1145
Query: 801 RQA-----LVGLP-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 846
++A + LP G G LS Q++R+ IA LV P I+ +DE TS LD
Sbjct: 1146 KEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTE 1205
Query: 847 AAAVVMRTVRNTVDTGRTVVCTIH 870
+ VV + + GRT + H
Sbjct: 1206 SEKVVQEAL-DKAREGRTCIVIAH 1228
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 7e-09
Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 17/147 (11%)
Query: 703 ALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFTRISGYCEQNDIHSP 759
L+G TG+GK+ ++++AG + RG + I+ P + R G+ Q+ P
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFP 83
Query: 760 YVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 819
+++VY ++ Y LR V R V E+ E + + L LS +R+
Sbjct: 84 HLSVYRNIAYG--LRNVERVERDRR---VREMAEKLGIAHLLDRKP-----ARLSGGERQ 133
Query: 820 RLTIAVELVANPSIIFMDEPTSGLDAR 846
R+ +A LV P ++ +DEP S +D +
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 56.7 bits (138), Expect = 9e-09
Identities = 50/197 (25%), Positives = 90/197 (45%), Gaps = 41/197 (20%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY--ITGNITISGYP---KNQET 743
L +S +P + A G +G GK+T+ +L R Y G ITI G P + E
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLL----ERFYQPTAGEITIDGQPIDNISLEN 73
Query: 744 FTRISGYCEQNDIHSPYV---TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 800
+ G+ Q+ + T+ E+L Y + E ++ ++++L
Sbjct: 74 WRSQIGFVSQD----SAIMAGTIRENLTYGLEGDYTDE-----------DLWQVLDLAFA 118
Query: 801 RQALVGLPGVNGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 849
R + +P + L+TE QR+RL IA + NP I+ +DE T+ LD+ + +
Sbjct: 119 RSFVENMP--DQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESES 176
Query: 850 VVMRTVRNTVDTGRTVV 866
+V + + +++ GRT +
Sbjct: 177 MVQKAL-DSLMKGRTTL 192
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 6e-08
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 41/183 (22%)
Query: 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY-IT-GNITISGYPKN 740
+K L + VS + G AL+G +GSGK+T+ ++ TR Y + G+I + G+ +
Sbjct: 354 KEKPAL-SHVSFSIPQGKTVALVGRSGSGKSTIANLF----TRFYDVDSGSICLDGH--D 406
Query: 741 QETFTRIS-----GYCEQ-----NDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEE 790
+ + Q ND T+ ++ Y+A + E +E+
Sbjct: 407 VRDYKLTNLRRHFALVSQNVHLFND------TIANNIAYAAEGEYTREQ--------IEQ 452
Query: 791 ------VMELVELNPLR-QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 843
ME +E P ++G G + LS QR+R+ IA L+ + ++ +DE TS L
Sbjct: 453 AARQAHAMEFIENMPQGLDTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSAL 511
Query: 844 DAR 846
D
Sbjct: 512 DTE 514
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 6e-08
Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 23/171 (13%)
Query: 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPK 739
+ GVS R G + L+G +GSGKTT++ ++AG R T+G + G ++ P
Sbjct: 25 PGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP 84
Query: 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRL----SSEVNSKTREMFVEEVMELV 795
+ R G QN ++TVY+++ + LR E++++ V E++ +
Sbjct: 85 QK----RNVGLVFQNYALFQHMTVYDNVSFG--LREKRVPKDEMDAR-----VRELLRFM 133
Query: 796 ELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 846
L + LS Q++R+ +A L P ++ DEP + +D +
Sbjct: 134 RLESYANRFP-----HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 9e-08
Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 40/183 (21%)
Query: 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY-IT-GNITISGYPKN 740
++ L ++ G AL+G +GSGK+T+ ++ TR Y I G+I + G+ +
Sbjct: 353 GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLI----TRFYDIDEGHILMDGH--D 406
Query: 741 QETFTRIS-----GYCEQ-----NDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEE 790
+T S Q ND TV ++ Y+ +RE +EE
Sbjct: 407 LREYTLASLRNQVALVSQNVHLFND------TVANNIAYA-------RTEEYSREQ-IEE 452
Query: 791 ------VMELVELNPLR-QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 843
M+ + ++G GV LS QR+R+ IA L+ + I+ +DE TS L
Sbjct: 453 AARMAYAMDFINKMDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSAL 511
Query: 844 DAR 846
D
Sbjct: 512 DTE 514
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 3e-07
Identities = 45/190 (23%), Positives = 80/190 (42%), Gaps = 45/190 (23%)
Query: 685 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT-GNITISGYPKNQET 743
K+V L+ V+ G ++G +G+GKTT M ++AG + G +
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNG 73
Query: 744 FTRISGYCEQNDIHS--------PYVTVYESLLYSAWLRLS----SEVNSKTREMFVEEV 791
+ E I P +T +E++ + L E+ + VEEV
Sbjct: 74 KLIVPP--EDRKIGMVFQTWALYPNLTAFENIAFP--LTNMKMSKEEIRKR-----VEEV 124
Query: 792 MELVELNPL-----RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA- 845
++++++ + R+ LS Q++R+ +A LV +PS++ +DEP S LDA
Sbjct: 125 AKILDIHHVLNHFPRE----------LSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
Query: 846 -RAAAVVMRT 854
R R
Sbjct: 175 MR---DSARA 181
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 3e-07
Identities = 28/199 (14%), Positives = 64/199 (32%), Gaps = 21/199 (10%)
Query: 712 KTTLMDVLAGRKTRGYITGNIT-ISGYPKNQETFTRISG-YCEQNDIHSPYVTVYESLLY 769
+ + +L + R + + + + + + + G ++
Sbjct: 140 QGQIDAILESDEAREKVVREVLNLDKFETAYKKLSELKGGSGGTEELIEKVKKYKALARE 199
Query: 770 SAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNG------LSTEQRKRLTI 823
+A ++ + E + E+V + + + LS +R L +
Sbjct: 200 AALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGL 259
Query: 824 AVEL------VANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIF 877
A L S++ +DEPT LD ++ + + V+ H ++
Sbjct: 260 AFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELK 317
Query: 878 EAFDAGI-----PGVSKIR 891
+A D I G SK+
Sbjct: 318 DAADHVIRISLENGSSKVE 336
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 8e-07
Identities = 48/171 (28%), Positives = 73/171 (42%), Gaps = 31/171 (18%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFT 745
LN +S + PG + ++G +G GKTTL+ LAG + G I+ TI N
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 746 RISGYCEQNDIHSPYV-----TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 800
R GY Q V TVY ++ Y L + +E ++EL ++ L
Sbjct: 80 RRLGYLVQE-----GVLFPHLTVYRNIAYG--LGNGK-GRTAQERQRIEAMLELTGISEL 131
Query: 801 -----RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 846
+ LS Q++R +A L +P +I +DEP S LD +
Sbjct: 132 AGRYPHE----------LSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 2e-06
Identities = 52/203 (25%), Positives = 77/203 (37%), Gaps = 57/203 (28%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY-IT-GNITISG---------- 736
L GV+ G + ALMG G+GK+TL +LAG Y + G I + G
Sbjct: 19 LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP--EYTVERGEILLDGENILELSPDE 76
Query: 737 -----------YPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTRE 785
YP + G VT+ L + +L EV
Sbjct: 77 RARKGLFLAFQYP------VEVPG-----------VTIANFLRLALQAKLGREVGVAEFW 119
Query: 786 MFVEEVMELVELNP---LRQALVGLPGVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTS 841
V++ +EL++ + R +N G S ++KR I LV P+ +DE S
Sbjct: 120 TKVKKALELLDWDESYLSR-------YLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDS 172
Query: 842 GLDARAAAVVMRTVRNTVDTGRT 864
GLD A ++ V V+ R
Sbjct: 173 GLDIDA----LKVVARGVNAMRG 191
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 4e-06
Identities = 38/200 (19%), Positives = 76/200 (38%), Gaps = 29/200 (14%)
Query: 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ- 741
+L +S + PG L+G TGSGK+TL+ G I I G +
Sbjct: 32 GGNAIL-ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGEIQIDGVSWDSI 87
Query: 742 ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN 798
+ V + ++S R + + N+ + + +V + V L
Sbjct: 88 TLEQWRKAFG------------VIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLR 135
Query: 799 PLRQAL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 851
+ + + G LS ++ + +A +++ I+ +DEP++ LD ++
Sbjct: 136 SVIEQFPGKLDFVLVDGGCV-LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQII 194
Query: 852 MRTVRNTVDTGRTVVCTIHQ 871
RT++ TV+ +
Sbjct: 195 RRTLKQAF-ADCTVILCEAR 213
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 39/193 (20%), Positives = 77/193 (39%), Gaps = 38/193 (19%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 748
L ++ G L A+ G TG+GKT+L+ ++ G G I SG RIS
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSG---------RIS 102
Query: 749 GYCEQNDIHSPYV---TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LR--- 801
+C Q + ++ T+ E+++ ++ E V++ +L +
Sbjct: 103 -FCSQ----NSWIMPGTIKENIIGVSY-----------DEYRYRSVIKACQLEEDISKFA 146
Query: 802 ---QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNT 858
++G G+ LS QR R+++A + + + +D P LD + +
Sbjct: 147 EKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 205
Query: 859 VDTGRTVVCTIHQ 871
+ +T + +
Sbjct: 206 LMANKTRILVTSK 218
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 5e-06
Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 38/171 (22%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFT 745
L+ +S G ++G TG+GKT ++++AG G I ++ +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK---- 71
Query: 746 RISGYCEQNDIHSPYV-----TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 800
+ QN Y V ++L + +R+ ++ R V + +++ L
Sbjct: 72 HDIAFVYQN-----YSLFPHMNVKKNLEFG--MRMK-KIKDPKR---VLDTARDLKIEHL 120
Query: 801 -----RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 846
LS +++R+ +A LV NP I+ +DEP S LD R
Sbjct: 121 LDRNPLT----------LSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 9e-06
Identities = 39/193 (20%), Positives = 75/193 (38%), Gaps = 37/193 (19%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 748
L ++ G L A+ G TG+GKT+L+ ++ G G I SG RIS
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSG---------RIS 72
Query: 749 GYCEQNDIHSPYV---TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LR--- 801
+C Q ++ T+ E++++ E V++ +L +
Sbjct: 73 -FCSQ----FSWIMPGTIKENIIF----------GVSYDEYRYRSVIKACQLEEDISKFA 117
Query: 802 ---QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNT 858
++G G+ LS QR R+++A + + + +D P LD + +
Sbjct: 118 EKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 176
Query: 859 VDTGRTVVCTIHQ 871
+ +T + +
Sbjct: 177 LMANKTRILVTSK 189
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 9e-06
Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 804 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGR 863
+VG G LS QR+R+ IA LV NP I+ DE TS LD + V+MR + GR
Sbjct: 138 IVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGR 195
Query: 864 TVVCTIH 870
TV+ H
Sbjct: 196 TVIIIAH 202
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 52/183 (28%), Positives = 84/183 (45%), Gaps = 34/183 (18%)
Query: 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT-GNITISGY----- 737
LN ++ + G AL+G +GSGK+TL+ +AG T G I
Sbjct: 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTEL 70
Query: 738 -PKNQET---FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVME 793
PK++ F QN P++TVY+++ + L L + + + V EV +
Sbjct: 71 PPKDRNVGLVF--------QNWALYPHMTVYKNIAFP--LELR-KAPREEIDKKVREVAK 119
Query: 794 LVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAVV 851
++ ++ L L P LS Q++R+ IA LV P ++ +DEP S LDA R +
Sbjct: 120 MLHIDKL---LNRYPW--QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLR---LE 171
Query: 852 MRT 854
+R
Sbjct: 172 VRA 174
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 52/207 (25%), Positives = 77/207 (37%), Gaps = 61/207 (29%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGY-IT-GNITISG---------- 736
L G+S PG + A+MG GSGK+TL LAGR+ Y +T G + G
Sbjct: 36 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE--DYEVTGGTVEFKGKDLLALSPED 93
Query: 737 -----------YPKNQETFTRISGYCEQNDIHSPYVTVYESLL--YSAWLRLSSEVNSKT 783
YP I G V+ L +A +
Sbjct: 94 RAGEGIFMAFQYP------VEIPG-----------VSNQFFLQTALNAVRSYRGQETLDR 136
Query: 784 REM--FVEEVMELVELNP---LRQALVGLPGVN-GLSTEQRKRLTIAVELVANPSIIFMD 837
+ +EE + L+++ R VN G S ++KR I V P + +D
Sbjct: 137 FDFQDLMEEKIALLKMPEDLLTRS-------VNVGFSGGEKKRNDILQMAVLEPELCILD 189
Query: 838 EPTSGLDARAAAVVMRTVRNTVDTGRT 864
E SGLD A ++ V + V++ R
Sbjct: 190 ESDSGLDIDA----LKVVADGVNSLRD 212
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 2e-05
Identities = 47/196 (23%), Positives = 80/196 (40%), Gaps = 28/196 (14%)
Query: 681 VHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGY 737
V+ + + G+ G + L+G G+GKTT + +AG R +G I I+
Sbjct: 14 VYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNK 73
Query: 738 PKNQETFTRISGYCEQNDIHSP-------YVTVYESLLYSAWLRLSSEVNSKTREMFVEE 790
P + I+ P +TVYE+L+ A+ R E + +E
Sbjct: 74 PAHVINRMGIA--------LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD----LEW 121
Query: 791 VMELV-ELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 849
+ L L + L G LS +++ L I L++ P ++ MDEP+ GL +
Sbjct: 122 IFSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVS 176
Query: 850 VVMRTVRNTVDTGRTV 865
V ++ G T+
Sbjct: 177 EVFEVIQKINQEGTTI 192
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 4e-05
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 804 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTV-RNTVDTG 862
VG G LS QR+ + +A L+ P ++ +D TS LDA V R + +
Sbjct: 149 EVGETGNQ-LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWAS 207
Query: 863 RTVVCTIH 870
RTV+
Sbjct: 208 RTVLLITQ 215
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 4e-05
Identities = 43/195 (22%), Positives = 83/195 (42%), Gaps = 39/195 (20%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 748
LNG++ + G L A++G G GK++L+ L + + G++ I G ++
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVAIKG---------SVA 69
Query: 749 GYCEQNDIHSPYV---TVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LR--- 801
Y Q ++ ++ E++L+ + E + V++ L P L
Sbjct: 70 -YVPQ----QAWIQNDSLRENILF----------GCQLEEPYYRSVIQACALLPDLEILP 114
Query: 802 ---QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTV--R 856
+ +G GVN LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 115 SGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGP 173
Query: 857 NTVDTGRTVVCTIHQ 871
+ +T + H
Sbjct: 174 KGMLKNKTRILVTHS 188
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 6e-05
Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 34/163 (20%)
Query: 704 LMGVTGSGKTTLMDVLAGRKTRGYIT-GNITISGY------PKNQE---TFTRISGYCEQ 753
L+G +G GKTT + ++AG + T G I PK++ F Q
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPKDRNISMVF--------Q 90
Query: 754 NDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGL 813
+ P++TVYE++ + L++ + + V EL+++ L L P L
Sbjct: 91 SYAVWPHMTVYENIAFP--LKIK-KFPKDEIDKRVRWAAELLQIEEL---LNRYPA--QL 142
Query: 814 STEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAVVMRT 854
S QR+R+ +A +V P ++ MDEP S LDA R V MR
Sbjct: 143 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLR---VAMRA 182
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 55/193 (28%), Positives = 83/193 (43%), Gaps = 52/193 (26%)
Query: 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYIT-GNITISGY---- 737
K+ ++GVS + G AL+G +G GKTT + +LAG T G I
Sbjct: 13 FGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVND 69
Query: 738 --PKNQET---FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLS----SEVNSKTREMFV 788
PK +E F QN P++TV+E++ + LR EV + V
Sbjct: 70 IPPKYREVGMVF--------QNYALYPHMTVFENIAFP--LRARRISKDEVEKR-----V 114
Query: 789 EEVMELVELNPL-----RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 843
E+ + ++ L Q LS Q++R+ +A LV P ++ DEP S L
Sbjct: 115 VEIARKLLIDNLLDRKPTQ----------LSGGQQQRVALARALVKQPKVLLFDEPLSNL 164
Query: 844 DA--RAAAVVMRT 854
DA R ++MR
Sbjct: 165 DANLR---MIMRA 174
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 48/161 (29%), Positives = 73/161 (45%), Gaps = 24/161 (14%)
Query: 704 LMGVTGSGKTTLMDVLAGRKTRGYIT-GNITISGYPKNQETFTRISGYCE-------QND 755
L+G +G GKTT + ++AG + + G I I + Q+
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSY 90
Query: 756 IHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLST 815
P++TVY+++ + L+L +V + + V EV EL+ L L L P LS
Sbjct: 91 ALYPHMTVYDNIAFP--LKLR-KVPRQEIDQRVREVAELLGLTEL---LNRKPR--ELSG 142
Query: 816 EQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAVVMRT 854
QR+R+ + +V P + MDEP S LDA R V MR
Sbjct: 143 GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLR---VRMRA 180
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 16/162 (9%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFT 745
LN VS G + ++G +G+GK+TL+ + R T G + ++ +++ T
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 746 RIS-GYCEQ--NDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQ 802
R G Q N + S TV+ ++ L L + + V E++ LV L
Sbjct: 104 RRQIGMIFQHFNLLSS--RTVFGNVALP--LELDN-TPKDEVKRRVTELLSLVGLGDKHD 158
Query: 803 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 844
+ P + LS Q++R+ IA L +NP ++ D+ TS LD
Sbjct: 159 SY---P--SNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIH 870
RL +++ L S++ +DEPT LD ++ + + V+ H
Sbjct: 70 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH 121
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 5e-04
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 846
GV LS Q++RL+IA + NP I+ +DE TS LD
Sbjct: 475 GVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLE 511
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1230 | ||||
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-27 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-09 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 7e-26 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-06 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-25 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 5e-13 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-25 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 8e-15 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 6e-24 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 3e-04 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-23 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-06 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-23 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 8e-08 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 4e-23 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-10 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-22 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-09 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 9e-22 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-07 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-21 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 6e-07 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-20 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-10 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-20 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-05 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-19 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-08 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 9e-19 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-08 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-18 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-05 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 9e-18 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-08 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-17 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-07 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-14 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 8e-06 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 6e-12 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 4e-05 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-06 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.004 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-04 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.003 |
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 109 bits (275), Expect = 2e-27
Identities = 50/204 (24%), Positives = 96/204 (47%), Gaps = 10/204 (4%)
Query: 677 KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNIT 733
K + ++ + L V+ + G ++MG +GSGK+T+++++ + T G + NI
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIK 68
Query: 734 ISGYPKNQETFTRIS--GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEV 791
+ ++ T R G+ Q P +T E++ + ++ + R E
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC 128
Query: 792 MELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVV 851
+++ EL + P N LS Q++R+ IA L NP II D+PT LD++ +
Sbjct: 129 LKMAEL--EERFANHKP--NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKI 184
Query: 852 MRTVRNTVD-TGRTVVCTIHQPSI 874
M+ ++ + G+TVV H ++
Sbjct: 185 MQLLKKLNEEDGKTVVVVTHDINV 208
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 57.2 bits (138), Expect = 2e-09
Identities = 32/208 (15%), Positives = 64/208 (30%), Gaps = 44/208 (21%)
Query: 15 SGKVTYNGHDMHEFVPQRTA-------AYISQHDIHIGEMTVRETLAFSARCQGVGSRYD 67
G+V + ++ ++ Q I +T E + + G
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRG---- 114
Query: 68 MLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEML 127
+S E+ + + E + + + +
Sbjct: 115 ---AMSGEERRKRAL-----------------ECLKMAELEERFAN-----------HKP 143
Query: 128 RGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISL 187
+SGGQ++RV L + D+ + LDS T I+ L + N T ++
Sbjct: 144 NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVT 203
Query: 188 LQPAPEVYNLFDDIILVSDGQIVYQGPL 215
V + II + DG++ + L
Sbjct: 204 HD--INVARFGERIIYLKDGEVEREEKL 229
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 105 bits (263), Expect = 7e-26
Identities = 44/203 (21%), Positives = 75/203 (36%), Gaps = 14/203 (6%)
Query: 681 VHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYP 738
V+ + + G+ G + L+G G+GKTT + +AG R +G I N
Sbjct: 14 VYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNK 73
Query: 739 KNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN 798
+ P +TVYE+L+ A+ R E + L
Sbjct: 74 PAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE---GIKRDLEWIFSLFPRLK 130
Query: 799 PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNT 858
+ L G LS +++ L I L++ P ++ MDEP+ GL + V ++
Sbjct: 131 ERLKQLGG-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKI 185
Query: 859 VDTGRTVVCTIHQPSIDIFEAFD 881
G T++ + A
Sbjct: 186 NQEGTTILLVEQ----NALGALK 204
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 48.8 bits (116), Expect = 1e-06
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 124 DEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTA 183
++ +SGG+++ + G L+ L MDE S GL + + + N GT
Sbjct: 134 KQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ--EGTT 191
Query: 184 LISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218
++ + Q A + ++ GQIV +G +
Sbjct: 192 ILLVEQNALGALKVAHYGYVLETGQIVLEGKASEL 226
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 105 bits (262), Expect = 1e-25
Identities = 51/191 (26%), Positives = 78/191 (40%), Gaps = 11/191 (5%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQETFTR 746
L+GVS + G +T ++G GSGK+TL++V+ G + G + + E +
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 747 ISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNS-------KTREMFVEEVMELVELNP 799
Q +TV E+LL S +NS E VE+ +++E
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 800 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV 859
L G LS Q K + I L+ NP +I MDEP +G+ A + V
Sbjct: 140 LSHLYDRKAG--ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 197
Query: 860 DTGRTVVCTIH 870
G T + H
Sbjct: 198 AKGITFLIIEH 208
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 68.1 bits (166), Expect = 5e-13
Identities = 47/222 (21%), Positives = 74/222 (33%), Gaps = 35/222 (15%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVP----QRTAAYISQHDIHIGEMTVRETLAFS 56
+ + G L + G+V + D+ P Q + EMTV E L
Sbjct: 47 INVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIG 103
Query: 57 ARCQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDV 116
C G + F K + + +E IL+ L L
Sbjct: 104 EICPGESPLNSL---------------------FYKKWIPKEEEMVEKAFKILEFLKLSH 142
Query: 117 CADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFN 176
D G+ +SGGQ K V G L+ + MDE G+ I N + +
Sbjct: 143 LYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 197
Query: 177 HILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218
G + + V N D + ++ +GQI+ +G E
Sbjct: 198 A--KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEE 237
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 103 bits (259), Expect = 2e-25
Identities = 46/200 (23%), Positives = 79/200 (39%), Gaps = 20/200 (10%)
Query: 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQ 741
+N ++ + G L+G +G GKTT + ++AG T G I
Sbjct: 17 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT----EGRIYFGDRDVTY 72
Query: 742 -ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 800
R Q+ P++TVYE++ + ++ + + V EL+++ L
Sbjct: 73 LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEEL 129
Query: 801 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN-TV 859
LS QR+R+ +A +V P ++ MDEP S LDA+ + ++
Sbjct: 130 LNRYPA-----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 184
Query: 860 DTGRTVVCTIHQPSIDIFEA 879
T + H D EA
Sbjct: 185 KLKVTTIYVTH----DQVEA 200
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 73.3 bits (180), Expect = 8e-15
Identities = 41/240 (17%), Positives = 82/240 (34%), Gaps = 52/240 (21%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQ-RTAAYISQHDIHIGEMTVRETLAFSARC 59
+ +AG + + G++ + D+ P+ R + + Q MTV E +AF +
Sbjct: 49 LRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKI 105
Query: 60 QGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCAD 119
+ + E ++ + ++L ++ +
Sbjct: 106 KK----------FPKDEIDKRV------------------------RWAAELLQIEELLN 131
Query: 120 TVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHIL 179
+SGGQR+RV +V L MDE + LD+ + + + L
Sbjct: 132 RYPAQ-----LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL 186
Query: 180 NGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFL 239
T + E + D I +++ GQ++ G V + P +A F+
Sbjct: 187 KVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTEV--------YLRPNSVFVATFI 237
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 98.8 bits (246), Expect = 6e-24
Identities = 36/187 (19%), Positives = 76/187 (40%), Gaps = 16/187 (8%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 748
L ++ G + G G GKTTL+ ++ + G I +G P +
Sbjct: 17 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK--VKGKI 72
Query: 749 GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLP 808
+ + I ++V + L A L K + + + +E VE+ L++
Sbjct: 73 FFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK----- 122
Query: 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV-DTGRTVVC 867
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G ++
Sbjct: 123 -LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 181
Query: 868 TIHQPSI 874
+ + S
Sbjct: 182 SREELSY 188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 41.1 bits (96), Expect = 3e-04
Identities = 22/186 (11%), Positives = 58/186 (31%), Gaps = 47/186 (25%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQ 60
+ ++ L G++ YNG + + + ++ + I +++V + L A
Sbjct: 44 LKTISTYLKPL---KGEIIYNGVPITKV--KGKIFFLPEEIIVPRKISVEDYLKAVASLY 98
Query: 61 GVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADT 120
GV + +++ L+ +++
Sbjct: 99 GVKVNKNEIMDA------------------------------------LESVEVLDLKKK 122
Query: 121 VVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILN 180
+ +S G +RV L+ A +D+ +D + ++ S+ +
Sbjct: 123 L------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKG 176
Query: 181 GTALIS 186
+ S
Sbjct: 177 IVIISS 182
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 98.8 bits (246), Expect = 2e-23
Identities = 42/196 (21%), Positives = 77/196 (39%), Gaps = 20/196 (10%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFT 745
L GVS R G + +++G +GSGK+T + + + + G I I+
Sbjct: 18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 77
Query: 746 RIS-----------GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMEL 794
Q+ ++TV E+++ ++ + +
Sbjct: 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME--APIQVLGLSKHDARERALKYLAK 135
Query: 795 VELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRT 854
V ++ Q LS Q++R++IA L P ++ DEPTS LD V+R
Sbjct: 136 VGIDERAQGKY----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI 191
Query: 855 VRNTVDTGRTVVCTIH 870
++ + G+T+V H
Sbjct: 192 MQQLAEEGKTMVVVTH 207
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 49.1 bits (117), Expect = 1e-06
Identities = 42/242 (17%), Positives = 77/242 (31%), Gaps = 63/242 (26%)
Query: 15 SGKVTYNGHDMHEFVPQ----------------RTAAYISQHDIHIGEMTVRETLAFSAR 58
G + NG +++ + + QH MTV E + +
Sbjct: 56 EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPI 115
Query: 59 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCA 118
S++D RE+A K L + +D A
Sbjct: 116 QVLGLSKHD------ARERALKY---------------------------LAKVGIDERA 142
Query: 119 DTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHI 178
+ +SGGQ++RV+ L L DE ++ LD ++ + Q
Sbjct: 143 Q----GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE- 197
Query: 179 LNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADF 238
G ++ + ++ +I + G+I +G E V F P+ + F
Sbjct: 198 -EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV--------FGNPQSPRLQQF 248
Query: 239 LQ 240
L+
Sbjct: 249 LK 250
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 98.8 bits (246), Expect = 3e-23
Identities = 38/185 (20%), Positives = 72/185 (38%), Gaps = 17/185 (9%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRIS 748
L ++ G + A+ G TGSGKT+L+ ++ G G I SG R+
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RV- 99
Query: 749 GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLP 808
+C Q P T+ E++++ E K+ + ++ + ++G
Sbjct: 100 SFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG-E 154
Query: 809 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCT 868
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 155 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 214
Query: 869 IHQPS 873
+
Sbjct: 215 TSKME 219
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.0 bits (127), Expect = 8e-08
Identities = 33/216 (15%), Positives = 67/216 (31%), Gaps = 52/216 (24%)
Query: 3 ALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGV 62
+ G+L++S G + ++G F Q I T++E + F
Sbjct: 81 LILGELEAS---EGIIKHSGRVS--FCSQ---------FSWIMPGTIKENIIFGVSYDE- 125
Query: 63 GSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVV 122
+ ++ + + +TV+
Sbjct: 126 -------------YRYKSVVKACQLQQDI--------------------TKFAEQDNTVL 152
Query: 123 GDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGT 182
G+ + +SGGQR R++ + A +D LD T + S + N T
Sbjct: 153 GEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC-VCKLMANKT 210
Query: 183 ALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218
++ + E D I+++ G + G +
Sbjct: 211 RILVTSK--MEHLRKADKILILHQGSSYFYGTFSEL 244
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 97.3 bits (242), Expect = 4e-23
Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 13/203 (6%)
Query: 677 KRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNIT 733
K + LN VS G + ++G +G+GK+TL+ + R T G +
Sbjct: 9 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQE 68
Query: 734 ISGYPKNQET-FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVM 792
++ +++ T R G Q+ TV+ ++ L + + K R V E++
Sbjct: 69 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR---VTELL 125
Query: 793 ELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVM 852
LV L + LS Q++R+ IA L +NP ++ DE TS LD ++
Sbjct: 126 SLVGLGDKHDSYPS-----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180
Query: 853 RTVRNTVD-TGRTVVCTIHQPSI 874
+++ G T++ H+ +
Sbjct: 181 ELLKDINRRLGLTILLITHEMDV 203
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 60.7 bits (147), Expect = 1e-10
Identities = 43/230 (18%), Positives = 74/230 (32%), Gaps = 54/230 (23%)
Query: 15 SGKVTYNGHDMHEFVPQRTA------AYISQHDIHIGEMTVRETLAFSARCQGVGSRYDM 68
G V +G ++ I QH + TV +A
Sbjct: 59 EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT------ 112
Query: 69 LVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLR 128
+ E ++ +L ++ L D+ +
Sbjct: 113 ----PKDEVKRRV------------------------TELLSLVGLGDKHDSYPSN---- 140
Query: 129 GISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLL 188
+SGGQ++RV L L DE ++ LD +TT I+ L N L T L+
Sbjct: 141 -LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITH 199
Query: 189 QPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADF 238
+ V + D + ++S+G+++ Q + V F PK F
Sbjct: 200 EMD-VVKRICDCVAVISNGELIEQDTVSEV--------FSHPKTPLAQKF 240
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 95.8 bits (238), Expect = 1e-22
Identities = 45/189 (23%), Positives = 78/189 (41%), Gaps = 12/189 (6%)
Query: 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYITGNITISGYPKNQ 741
K +L G+S G + L+G G+GKTT + +++ + + G +T + +
Sbjct: 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEP 70
Query: 742 ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLR 801
++ Y + + E L + A +S E VE E+ L
Sbjct: 71 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKI 127
Query: 802 QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT 861
+ V S ++L IA L+ NP + +DEPTSGLD A V + ++
Sbjct: 128 KDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 182
Query: 862 GRTVVCTIH 870
G T++ + H
Sbjct: 183 GLTILVSSH 191
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 56.5 bits (136), Expect = 3e-09
Identities = 42/245 (17%), Positives = 77/245 (31%), Gaps = 54/245 (22%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQ--RTAAYISQHDIHIGEMTVRETLAFSAR 58
+ ++ + S SG VT G ++ E + + +Y+ + M E L F A
Sbjct: 45 LRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAG 101
Query: 59 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCA 118
S E + + ++ L
Sbjct: 102 FYA----------SSSSEIEEMV------------------------ERATEIAGLGEKI 127
Query: 119 DTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHI 178
+ + S G +++ L+ +DE ++GLD + L Q +
Sbjct: 128 K-----DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 182
Query: 179 LNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADF 238
+ S EV L D I L+ +G IV G +E + + K + I +
Sbjct: 183 GLTILVSS--HNMLEVEFLCDRIALIHNGTIVETGTVEEL--------KERYKAQNIEEV 232
Query: 239 LQEVT 243
+EV
Sbjct: 233 FEEVV 237
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 93.8 bits (233), Expect = 9e-22
Identities = 39/196 (19%), Positives = 72/196 (36%), Gaps = 11/196 (5%)
Query: 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP---K 739
++ L ++ G AL+G +GSGK+T+ ++ G+I + G+
Sbjct: 25 GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREY 82
Query: 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP 799
+ QN ++ R + M+ +
Sbjct: 83 TLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAAR---MAYAMDFINKMD 139
Query: 800 LR-QALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNT 858
++G GV LS QR+R+ IA L+ + I+ +DE TS LD + + +
Sbjct: 140 NGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE- 197
Query: 859 VDTGRTVVCTIHQPSI 874
+ RT + H+ S
Sbjct: 198 LQKNRTSLVIAHRLST 213
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 52.2 bits (125), Expect = 1e-07
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 111 VLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVN 170
+ +D DT++G E +SGGQR+R+ L+ + L +DE ++ LD+ + I
Sbjct: 135 INKMDNGLDTIIG-ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA 193
Query: 171 SLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218
+L + N T+L+ + D+I++V DG IV +G +
Sbjct: 194 ALDELQK--NRTSLVIAHR--LSTIEQADEIVVVEDGIIVERGTHSEL 237
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 92.7 bits (230), Expect = 2e-21
Identities = 46/195 (23%), Positives = 83/195 (42%), Gaps = 10/195 (5%)
Query: 683 DDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP---K 739
D V+L+ ++ + + G + ++G +GSGK+TL ++ + I G+
Sbjct: 13 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ--VLIDGHDLALA 70
Query: 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP 799
+ R G Q D ++ +++ + +V + + + +
Sbjct: 71 DPNWLRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSVEKVIYAAK---LAGAHDFISELR 126
Query: 800 LRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV 859
+ GLS QR+R+ IA LV NP I+ DE TS LD + V+MR + +
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-I 185
Query: 860 DTGRTVVCTIHQPSI 874
GRTV+ H+ S
Sbjct: 186 CKGRTVIIIAHRLST 200
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 49.9 bits (119), Expect = 6e-07
Identities = 46/204 (22%), Positives = 84/204 (41%), Gaps = 19/204 (9%)
Query: 15 SGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSR 74
SGK T ++P+ I HD+ + R GV + ++L+ S
Sbjct: 40 SGKSTLTKLIQRFYIPENGQVLIDGHDLA------LADPNWLRRQVGVVLQDNVLLNRSI 93
Query: 75 REKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQ 134
+ + P ++ V+ + A + +L +T+VG++ G+SGGQ
Sbjct: 94 IDNISLANPGMSVE----KVIYAAKLAGAHDF----ISELREGYNTIVGEQG-AGLSGGQ 144
Query: 135 RKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEV 194
R+R+ LV L DE ++ LD + I+ ++ + I G +I +
Sbjct: 145 RQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM---HKICKGRTVIIIAH-RLST 200
Query: 195 YNLFDDIILVSDGQIVYQGPLEHV 218
D II++ G+IV QG + +
Sbjct: 201 VKNADRIIVMEKGKIVEQGKHKEL 224
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 90.6 bits (225), Expect = 1e-20
Identities = 48/223 (21%), Positives = 92/223 (41%), Gaps = 21/223 (9%)
Query: 654 LPFEPFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKT 713
+ + + D +++ + D++ +L ++ + G A +G++G GK+
Sbjct: 10 IEIKQGRIDIDHVSFQYN-----------DNEAPILKDINLSIEKGETVAFVGMSGGGKS 58
Query: 714 TLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCE--QNDIHSPYVTVYESLLYSA 771
TL++++ +G I I G+ + Q D TV E++L
Sbjct: 59 TLINLIPRFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR 116
Query: 772 WLRLSSEVNSKTREMFVEEVMELVELNPLR-QALVGLPGVNGLSTEQRKRLTIAVELVAN 830
EV + + + + P VG GV LS Q++RL+IA + N
Sbjct: 117 PTATDEEVVEAAK---MANAHDFIMNLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNN 172
Query: 831 PSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873
P I+ +DE TS LD + +++ + + RT + H+ S
Sbjct: 173 PPILILDEATSALDLESESIIQEALDV-LSKDRTTLIVAHRLS 214
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 60.6 bits (147), Expect = 2e-10
Identities = 44/216 (20%), Positives = 82/216 (37%), Gaps = 43/216 (19%)
Query: 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYIS--QHDIHIGEMTVRETLAFSAR 58
+ + D + SG++ +GH++ +F+ I Q D + TV+E +
Sbjct: 61 INLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLG-- 115
Query: 59 CQGVGSRYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCA 118
+AAK+ A+ F +++L
Sbjct: 116 --------RPTATDEEVVEAAKM---ANAHDF--------------------IMNLPQGY 144
Query: 119 DTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHI 178
DT VG E +SGGQ++R++ + + L +DE ++ LD + I +L +
Sbjct: 145 DTEVG-ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK- 202
Query: 179 LNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGP 214
+ T LI + D I+++ +G IV G
Sbjct: 203 -DRTTLIVAHR--LSTITHADKIVVIENGHIVETGT 235
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 90.0 bits (223), Expect = 1e-20
Identities = 37/194 (19%), Positives = 71/194 (36%), Gaps = 24/194 (12%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG-RKTRGYIT-GNITISGYPKNQETFTR 746
L +SG R G + L+G G+GK+TL+ +AG +G I + + +
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK--LAL 72
Query: 747 ISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVG 806
Y Q V+ L + KTR + +V + L+
Sbjct: 73 HRAYLSQQQTPPFATPVWHYLTLHQ--------HDKTRTELLNDVAGALALDDKLGRSTN 124
Query: 807 LPGVNGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDARAAAVVMRTVRNTV 859
LS + +R+ +A ++ ++ +DEP + LD + + + +
Sbjct: 125 -----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALC 179
Query: 860 DTGRTVVCTIHQPS 873
G +V + H +
Sbjct: 180 QQGLAIVMSSHDLN 193
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 44.9 bits (106), Expect = 2e-05
Identities = 29/215 (13%), Positives = 53/215 (24%), Gaps = 52/215 (24%)
Query: 12 LKASGKVTYNGHDMHEFVPQRTA---AYISQHDIHIGEMTVRETLAFSARCQGVGSRYDM 68
G + + G + + + A AY+SQ V L
Sbjct: 49 TSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLH------------ 96
Query: 69 LVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLR 128
+ + + + + L LD
Sbjct: 97 ---------------------------QHDKTRTELLNDVAGALALDDKLGRSTNQ---- 125
Query: 129 GISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHIL-----NGTA 183
+SGG+ +RV +++ LD V + IL G A
Sbjct: 126 -LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLA 184
Query: 184 LISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218
++ L+ G+++ G E V
Sbjct: 185 IVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEV 219
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 87.3 bits (216), Expect = 1e-19
Identities = 46/193 (23%), Positives = 79/193 (40%), Gaps = 12/193 (6%)
Query: 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQET 743
++V+ ++ G +G +G GK+TL+ ++AG +T + I N
Sbjct: 11 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD--LFIGEKRMNDTP 68
Query: 744 FTRIS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQ 802
G Q+ P+++V E++ + L + V +V E+++L L
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLD 125
Query: 803 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV-DT 861
LS QR+R+ I LVA PS+ +DEP S LDA + +
Sbjct: 126 RKPK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL 180
Query: 862 GRTVVCTIHQPSI 874
GRT++ H
Sbjct: 181 GRTMIYVTHDQVE 193
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 54.2 bits (130), Expect = 2e-08
Identities = 36/224 (16%), Positives = 71/224 (31%), Gaps = 49/224 (21%)
Query: 17 KVTYNGHDMHEFVPQRTA-AYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRR 75
+ M++ P + Q ++V E ++F + G
Sbjct: 56 DLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKE-------VIN 108
Query: 76 EKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQR 135
++ ++ +VL L D +SGGQR
Sbjct: 109 QRVNQV---------------------------AEVLQLAHLLDRKPKA-----LSGGQR 136
Query: 136 KRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVY 195
+RV G LV +DE + LD++ + + + + L T + E
Sbjct: 137 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAM 195
Query: 196 NLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFL 239
L D I+++ G++ G + + P + +A F+
Sbjct: 196 TLADKIVVLDAGRVAQVGKPLEL--------YHYPADRFVAGFI 231
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.0 bits (210), Expect = 9e-19
Identities = 43/190 (22%), Positives = 76/190 (40%), Gaps = 9/190 (4%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP---KNQETFT 745
L G++ RPG +TAL+G GSGK+T+ +L G + + G P
Sbjct: 30 LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPLPQYEHRYLH 87
Query: 746 RISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALV 805
R Q ++ E++ Y + + E + + L V
Sbjct: 88 RQVAAVGQEPQVFGR-SLQENIAYGLTQKPTMEEITAAAVK-SGAHSFISGLPQGYDTEV 145
Query: 806 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRT 864
G LS QR+ + +A L+ P ++ +D+ TS LDA + V + + + + R+
Sbjct: 146 DEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRS 204
Query: 865 VVCTIHQPSI 874
V+ S+
Sbjct: 205 VLLITQHLSL 214
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.1 bits (130), Expect = 2e-08
Identities = 34/207 (16%), Positives = 72/207 (34%), Gaps = 39/207 (18%)
Query: 15 SGKVTYNGHDMHEFVPQ---RTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVE 71
G++ +G + ++ + R A + Q + + +++E +A+
Sbjct: 68 GGQLLLDGKPLPQYEHRYLHRQVAAVGQ-EPQVFGRSLQENIAYGLT------------- 113
Query: 72 LSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGIS 131
K + E A V + + L DT V E +S
Sbjct: 114 -------------------QKPTMEEITAAAVKSGAHSFISGLPQGYDTEVD-EAGSQLS 153
Query: 132 GGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPA 191
GGQR+ V L+ L +D+ ++ LD+++ + L + + + L+
Sbjct: 154 GGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH-- 211
Query: 192 PEVYNLFDDIILVSDGQIVYQGPLEHV 218
+ D I+ + G I G + +
Sbjct: 212 LSLVEQADHILFLEGGAIREGGTHQQL 238
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 83.4 bits (206), Expect = 3e-18
Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 11/196 (5%)
Query: 682 HDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYP 738
+DD +L +S +P + A G +G GK+T+ +L + T G IT I
Sbjct: 11 YDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNI- 69
Query: 739 KNQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN 798
+ E + G+ Q+ T+ E+L Y + E + ++ VE
Sbjct: 70 -SLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDL--AFARSFVENM 125
Query: 799 PLRQA-LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN 857
P + VG GV +S QR+RL IA + NP I+ +DE T+ LD+ + ++V + + +
Sbjct: 126 PDQLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS 184
Query: 858 TVDTGRTVVCTIHQPS 873
+ GRT + H+ S
Sbjct: 185 -LMKGRTTLVIAHRLS 199
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 45.2 bits (107), Expect = 2e-05
Identities = 39/202 (19%), Positives = 66/202 (32%), Gaps = 39/202 (19%)
Query: 15 SGKVTYNGHDMHEFVPQRTAAYIS--QHDIHIGEMTVRETLAFSARCQGVGSRYDMLVEL 72
+G++T +G + + + I D I T+RE L + +++L
Sbjct: 56 AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDL 115
Query: 73 SRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISG 132
+ + +PD +T VG E ISG
Sbjct: 116 AFARSFVENMPDQL--------------------------------NTEVG-ERGVKISG 142
Query: 133 GQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAP 192
GQR+R+ + L +DE + LDS + + +L T L+ +
Sbjct: 143 GQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHR--L 198
Query: 193 EVYNLFDDIILVSDGQIVYQGP 214
D I + GQI G
Sbjct: 199 STIVDADKIYFIEKGQITGSGK 220
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 81.9 bits (202), Expect = 9e-18
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 14/196 (7%)
Query: 684 DKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKN 740
++ + +S + G L+G +G GKTT + ++AG +RG I G+ ++ K
Sbjct: 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKG 73
Query: 741 QETFTRISG--YCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN 798
+ Q+ P++TVY+++ + LR +V + + V EV EL+ L
Sbjct: 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLT 130
Query: 799 PLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNT 858
L LS QR+R+ + +V P + MDEP S LDA+ + ++
Sbjct: 131 ELLNRKPR-----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKL 185
Query: 859 V-DTGRTVVCTIHQPS 873
G T + H
Sbjct: 186 QRQLGVTTIYVTHDQV 201
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 53.8 bits (129), Expect = 3e-08
Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 14/141 (9%)
Query: 99 QEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158
QE + + ++L L + + +SGGQR+RV G +V MDE +
Sbjct: 114 QEIDQRVREVAELLGLTELLNRKPRE-----LSGGQRQRVALGRAIVRKPQVFLMDEPLS 168
Query: 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHV 218
LD+ + L + L T + E + D I +++ G + G + V
Sbjct: 169 NLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGSPDEV 227
Query: 219 EQFFISMGFKCPKRKGIADFL 239
+ P +A F+
Sbjct: 228 --------YDKPANTFVAGFI 240
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 80.5 bits (198), Expect = 3e-17
Identities = 48/194 (24%), Positives = 88/194 (45%), Gaps = 13/194 (6%)
Query: 685 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT--GNITISGYPKN 740
K+V L+ V+ G ++G +G+GKTT M ++AG + G + + S
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 741 QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL 800
R G Q P +T +E++ + +++ + VEEV ++++++ +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHV 133
Query: 801 RQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV- 859
LS Q++R+ +A LV +PS++ +DEP S LDAR V+
Sbjct: 134 LN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 860 DTGRTVVCTIHQPS 873
G T++ H P+
Sbjct: 189 RLGVTLLVVSHDPA 202
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 50.9 bits (121), Expect = 3e-07
Identities = 36/231 (15%), Positives = 73/231 (31%), Gaps = 54/231 (23%)
Query: 15 SGKVTYNGHDMHEFVPQ------RTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDM 68
+G++ ++ + R + Q +T E +AF +
Sbjct: 59 TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEE-- 116
Query: 69 LVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLR 128
R++ ++ DI + RE
Sbjct: 117 -----IRKRVEEVAKILDIHHVLNHFPRE------------------------------- 140
Query: 129 GISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLL 188
+SG Q++RV LV L +DE + LD+ + + L T L+
Sbjct: 141 -LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSH 199
Query: 189 QPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFL 239
PA +++ + D + ++ G++V G E + + P +A +
Sbjct: 200 DPA-DIFAIADRVGVLVKGKLVQVGKPEDL--------YDNPVSIQVASLI 241
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 71.6 bits (175), Expect = 3e-14
Identities = 39/188 (20%), Positives = 71/188 (37%), Gaps = 15/188 (7%)
Query: 689 LNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG-YPKNQETFTRI 747
L+ +S G ++G TG+GKT ++++AG I + G +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR--ILLDGKDVTDLSPEKHD 73
Query: 748 SGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGL 807
+ QN P++ V ++L + + V + +++ L
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRM------KKIKDPKRVLDTARDLKIEHLLDRN--- 124
Query: 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV-DTGRTVV 866
LS +++R+ +A LV NP I+ +DEP S LD R + TV+
Sbjct: 125 --PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 867 CTIHQPSI 874
H +
Sbjct: 183 HITHDQTE 190
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 46.2 bits (109), Expect = 8e-06
Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 9/116 (7%)
Query: 124 DEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTA 183
D +SGG+++RV LV L +DE + LD T + L + T
Sbjct: 122 DRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTV 181
Query: 184 LISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFFISMGFKCPKRKGIADFL 239
L E + D I +V DG+++ G E + F+ P +A F+
Sbjct: 182 LHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEI--------FEKPVEGRVASFV 228
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 64.6 bits (157), Expect = 6e-12
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 18/180 (10%)
Query: 698 PGVLTALMGVTGSGKTTLMDVLAG--RKTRGYIT-GNITISGYPKNQETFTRISGYCEQN 754
L+G TG+GK+ ++++AG + RG + I+ P + R G+ Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQD 78
Query: 755 DIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 814
P+++VY ++ Y V R+ V E+ E + + L LS
Sbjct: 79 YALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKPA-----RLS 128
Query: 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV-DTGRTVVCTIHQPS 873
+R+R+ +A LV P ++ +DEP S +D + V+M +R + ++ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 44.2 bits (104), Expect = 4e-05
Identities = 37/205 (18%), Positives = 68/205 (33%), Gaps = 43/205 (20%)
Query: 15 SGKVTYNGHDMHEFVPQRTA-AYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELS 73
G+V NG D+ P+R ++ Q ++V +A+ R R + E+
Sbjct: 52 RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREM- 110
Query: 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGG 133
+ + D +SGG
Sbjct: 111 ----------------------------------------AEKLGIAHLLDRKPARLSGG 130
Query: 134 QRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPE 193
+R+RV LV L +DE + +D T ++ L + L E
Sbjct: 131 ERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-E 189
Query: 194 VYNLFDDIILVSDGQIVYQGPLEHV 218
L D++ ++ +G+IV +G L+ +
Sbjct: 190 AAMLADEVAVMLNGRIVEKGKLKEL 214
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 42.3 bits (98), Expect = 1e-04
Identities = 18/175 (10%), Positives = 32/175 (18%), Gaps = 33/175 (18%)
Query: 703 ALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVT 762
+ G G GKTTL+ + R + R ++
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR--AIGFWTEE--------VRDPETKKRTGFRIITTE 53
Query: 763 VYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLT 822
+ + + L +
Sbjct: 54 GKKKIF----------------------SSKFFTSKKLVGSYGVNVQYFEELAIPILERA 91
Query: 823 IAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIF 877
+I +DE + D VV TI +
Sbjct: 92 YREAKKDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIPIRDVHPL 145
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.3 bits (90), Expect = 0.003
Identities = 17/127 (13%), Positives = 34/127 (26%), Gaps = 11/127 (8%)
Query: 769 YSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELV 828
+A L + E + L + G V L+ L A+
Sbjct: 299 GNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALA------LLFAINSY 352
Query: 829 ANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSI-----DIFEAFDAG 883
+DE + LD + +R + + + ++ + +
Sbjct: 353 QPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVYRQQ 412
Query: 884 IPGVSKI 890
SKI
Sbjct: 413 QENSSKI 419
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1230 | |||
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.97 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.95 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.93 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.79 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.55 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.37 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.3 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.05 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.95 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.73 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.71 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.7 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 97.73 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.68 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.62 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.61 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.54 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.18 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.92 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.88 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.86 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.64 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.59 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.51 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.5 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.48 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.43 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.43 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.3 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.29 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 96.22 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.14 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.12 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.11 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.03 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.02 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.0 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.91 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.9 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.89 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.88 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.88 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.86 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.85 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.83 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.81 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.8 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.76 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.76 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.75 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.75 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.72 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.7 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.69 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.66 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.65 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.62 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.61 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.59 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.58 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.58 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.57 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.42 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.41 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.38 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.36 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.3 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.27 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.27 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.22 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.21 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.1 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.09 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.05 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.03 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.0 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.97 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.97 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.96 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.93 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.92 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.78 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.78 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.77 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.75 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.75 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.74 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.74 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.65 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.63 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.54 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.53 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.49 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 94.48 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.48 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.43 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.42 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.38 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.35 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.35 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.34 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.31 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.27 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.26 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.26 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 94.23 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 94.17 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.16 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.15 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.13 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.08 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 93.9 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.82 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.81 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 93.74 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 93.67 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.67 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.6 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 93.56 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 93.51 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.5 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 93.5 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.49 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.48 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.45 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.29 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 93.29 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.28 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.27 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.26 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.16 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.16 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 93.1 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.0 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 92.99 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 92.96 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 92.95 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.93 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 92.92 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 92.87 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 92.84 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.82 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 92.74 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 92.7 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 92.68 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.67 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 92.6 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 92.59 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 92.56 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 92.54 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 92.49 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.48 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.36 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.32 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 92.29 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 92.24 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.22 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 92.1 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.05 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 91.95 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 91.95 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 91.94 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 91.84 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 91.8 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 91.79 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.66 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 91.62 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 91.52 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 91.34 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 91.2 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.13 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 91.11 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 91.06 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 91.04 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 91.04 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 90.99 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 90.98 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 90.97 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 90.93 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 90.93 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 90.76 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 90.73 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 90.72 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 90.7 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 90.62 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 90.6 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 90.52 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 90.44 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 90.4 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 90.25 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 90.22 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 90.2 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 90.19 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 90.15 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 90.14 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 90.08 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.05 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 89.66 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 89.64 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 89.53 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 89.17 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 89.08 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 89.05 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 89.03 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 89.01 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 88.95 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 88.93 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 88.68 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 88.59 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 88.57 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.53 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 88.46 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 87.49 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 86.37 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 86.24 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 85.53 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 85.44 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 85.4 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 84.89 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 84.78 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 84.73 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 83.96 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 83.31 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 83.13 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 83.05 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 82.44 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 82.36 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 81.96 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 81.81 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 81.71 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 81.45 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 80.33 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 80.15 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 80.01 |
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=308.29 Aligned_cols=199 Identities=25% Similarity=0.334 Sum_probs=175.8
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 36894249999567210114523783257534289995772999995999949999998959998971899999989516
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|++.++. ...+|+|||+.+++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 3 ~i~v~nl~k~yg-------------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p--~sG~I~~~g~~i 67 (240)
T d1g2912 3 GVRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP--SRGQIYIGDKLV 67 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred CEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEEE
T ss_conf 189986999989-------------99998560668869989999999998099999999648788--989899999980
Q ss_pred CH-------HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 80-------01245599971488669999999999999982089899999999999999999199843323235999988
Q 000907 740 NQ-------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNG 812 (1230)
Q Consensus 740 ~~-------~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~ 812 (1230)
.. ...++.+|||+|++.++|.+||.|++.|...++ ..+.++.+++++++++.++|.+..+..+. .
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~p~-----~ 139 (240)
T d1g2912 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPR-----E 139 (240)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGG-----G
T ss_pred CCCCHHHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCHH-----H
T ss_conf 356644424532255120022122231011667633068772---99989999999999987599667629933-----4
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHC
Q ss_conf 8988999999999996199776994999999999999999999998848-988999914898889998713
Q 000907 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 813 lSgGerkrl~ia~~l~~~p~illlDEptsgLD~~~~~~i~~~l~~~~~~-~~tvi~~~hqp~~~i~~~fd~ 882 (1230)
||||||||++|||+|+.+|+++++||||+|||+.++..+++.++++.++ |.|+|+++|... ++....|+
T Consensus 140 LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~dr 209 (240)
T d1g2912 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDR 209 (240)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCE
T ss_conf 99999999999999826998898258876569899989999999998636988999959999-99996999
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=312.12 Aligned_cols=199 Identities=22% Similarity=0.334 Sum_probs=176.3
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 36894249999567210114523783257534289995772999995999949999998959998971899999989516
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|++.++. ++.+|+|||+.+++||+++|+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 6 ~I~v~nlsk~yg-------------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p--~sG~I~i~g~~i 70 (239)
T d1v43a3 6 EVKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP--TEGRIYFGDRDV 70 (239)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEEC
T ss_conf 499987999999-------------99998130678879989999999998299999999758999--878799916413
Q ss_pred CH-HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 80-01245599971488669999999999999982089899999999999999999199843323235999988898899
Q 000907 740 NQ-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQR 818 (1230)
Q Consensus 740 ~~-~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGer 818 (1230)
.. ...++.+|||+|++.+++.+||+|++.|.+.++ ..+.++.+++++++++.++|.+..|..+ ..||||||
T Consensus 71 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~ 142 (239)
T d1v43a3 71 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQR 142 (239)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCH
T ss_pred CCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHH
T ss_conf 547700015899800335342220999999999873---9999999999999998759855660995-----46999998
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHC
Q ss_conf 9999999996199776994999999999999999999998848-988999914898889998713
Q 000907 819 KRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 819 krl~ia~~l~~~p~illlDEptsgLD~~~~~~i~~~l~~~~~~-~~tvi~~~hqp~~~i~~~fd~ 882 (1230)
||++|||+|+.+|++++|||||+|||+.++..+++.++++.++ |.|+|+++|++. ++..+.|+
T Consensus 143 QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dr 206 (239)
T d1v43a3 143 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDR 206 (239)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSE
T ss_pred HHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCE
T ss_conf 89999766404998243068866689899989999999998731980799948999-99986999
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=312.02 Aligned_cols=198 Identities=25% Similarity=0.354 Sum_probs=173.2
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECC
Q ss_conf 68942499995672101145237832575342899957729999959999499999989599989718999999895168
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++++. .+.+|+|||+.+++||+++|+||||||||||+++|+|..++ .+|+|.+||.+..
T Consensus 1 Iev~nv~k~yg-------------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p--~sG~I~i~g~~i~ 65 (232)
T d2awna2 1 VQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLFIGEKRMN 65 (232)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEESSSCCT
T ss_pred CEEEEEEEEEC-------------CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEECC
T ss_conf 99999999989-------------99998111778869989999989998299999999658788--8888999999778
Q ss_pred H-HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 0-012455999714886699999999999999820898999999999999999991998433232359999888988999
Q 000907 741 Q-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 819 (1230)
Q Consensus 741 ~-~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerk 819 (1230)
. ...++.+|||+|++.+++.+||+|++.|...++. .+.++.+++++++++.++|.+..|..+. .|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~~-----~LSGGqkQ 137 (232)
T d2awna2 66 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQ 137 (232)
T ss_dssp TSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC------------------------
T ss_pred CCCHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHCCHH-----HCCHHHHH
T ss_conf 886444322234334202643337889789998759---9889999999999975788656648965-----69999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHHHC
Q ss_conf 9999999961997769949999999999999999999988-48988999914898889998713
Q 000907 820 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 820 rl~ia~~l~~~p~illlDEptsgLD~~~~~~i~~~l~~~~-~~~~tvi~~~hqp~~~i~~~fd~ 882 (1230)
|++|||+|+.+|++++|||||+|||+.++..+++.|+++. +.|.|+|+++|.+. ++..+.|+
T Consensus 138 RvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dr 200 (232)
T d2awna2 138 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADK 200 (232)
T ss_dssp --CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSE
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCE
T ss_conf 9999999703998899758887889889989999999998742987999948999-99996999
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=310.26 Aligned_cols=201 Identities=26% Similarity=0.384 Sum_probs=176.0
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 36894249999567210114523783257534289995772999995999949999998959998971899999989516
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++.+|+++++.. +...+|+|||+.+++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 3 ~i~v~nlsk~y~~-----------g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p--~~G~I~~~g~~i 69 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-----------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP--STGELYFDDRLV 69 (242)
T ss_dssp CEEEEEEEEEEGG-----------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred EEEEEEEEEEECC-----------CCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEEE
T ss_conf 8999757999889-----------998998040789879989999989998099999999758688--874599999995
Q ss_pred CH------HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 80------012455999714886699999999999999820898999999999999999991998433232359999888
Q 000907 740 NQ------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGL 813 (1230)
Q Consensus 740 ~~------~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~l 813 (1230)
.. ...++.+|||+|+..++|.+||+||+.|....+ ..+.++.+++++++++.++|.+..|..++ .|
T Consensus 70 ~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p~-----~L 141 (242)
T d1oxxk2 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPR-----EL 141 (242)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GS
T ss_pred ECCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCHHHHHHCCHH-----HC
T ss_conf 13731115312045147730433466665777766556761---37999999999999866591766648954-----59
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHC
Q ss_conf 988999999999996199776994999999999999999999998848-988999914898889998713
Q 000907 814 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 814 SgGerkrl~ia~~l~~~p~illlDEptsgLD~~~~~~i~~~l~~~~~~-~~tvi~~~hqp~~~i~~~fd~ 882 (1230)
|||||||++|||||+.+|+++++||||+|||+.++..+++.++++.++ |.|+|+++|.+. ++..+.|+
T Consensus 142 SGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dr 210 (242)
T d1oxxk2 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADR 210 (242)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSE
T ss_pred CHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHCCE
T ss_conf 9999858998757760466145447866799899889989999998635987999979999-99996999
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.4e-45 Score=303.22 Aligned_cols=204 Identities=23% Similarity=0.376 Sum_probs=173.4
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECC
Q ss_conf 68942499995672101145237832575342899957729999959999499999989599989718999999895168
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|+++++... .+...+|+|||+.+++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 I~i~nlsk~y~~~---------~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p--~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEECCC---------CEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCC--CCCEEEECCEECC
T ss_conf 8999079994899---------8208987133778849979999889999821655750688777--7662699999857
Q ss_pred H---HC----CCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCC
Q ss_conf 0---01----24559997148866999999999999998208989999999999999999919984-3323235999988
Q 000907 741 Q---ET----FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-LRQALVGLPGVNG 812 (1230)
Q Consensus 741 ~---~~----~~~~~~yv~q~~~~~~~ltv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~ 812 (1230)
. .. .++.+|||+|++.++|.+||.|++.+....+.....+.+++.+++.+.++.++|.+ ..+..+ ..
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----~~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQ 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GG
T ss_pred CCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCH-----HH
T ss_conf 6885551231255577880412417686688877578887224789999999999998876242345534880-----23
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHC
Q ss_conf 8988999999999996199776994999999999999999999998848-988999914898889998713
Q 000907 813 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 813 lSgGerkrl~ia~~l~~~p~illlDEptsgLD~~~~~~i~~~l~~~~~~-~~tvi~~~hqp~~~i~~~fd~ 882 (1230)
||||||||++|||||+.+|++|++||||+|||+.++..+++.|+++.++ |.|+|+++|++. . ..+.|+
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~-a~~~dr 214 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN-V-ARFGER 214 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH-H-HTTSSE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHH-H-HHHCCE
T ss_conf 89999999998756522788899468765469899999999999999843999999878889-9-986998
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-45 Score=304.83 Aligned_cols=202 Identities=22% Similarity=0.293 Sum_probs=174.5
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECC
Q ss_conf 68942499995672101145237832575342899957729999959999499999989599989718999999895168
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
|+++|++.++... .....+|+|||+.+++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 i~v~nlsk~y~~~---------~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p--~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 2 IKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQELT 70 (240)
T ss_dssp EEEEEEEEEEECS---------SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCC--SEEEEEETTEEEC
T ss_pred EEEEEEEEEECCC---------CEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCC--CCCCEEECCEEEE
T ss_conf 7998279996999---------8148986150578869979999899989888999987588636--6773288676852
Q ss_pred H------HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0------0124559997148866999999999999998208989999999999999999919984332323599998889
Q 000907 741 Q------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLS 814 (1230)
Q Consensus 741 ~------~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 814 (1230)
. ..+++.+|||+|+..+++.+||.|++.+...++. .+.++.+++++++++.+||.+..+..+. .||
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~---~~~~~~~~~v~~~L~~vgL~~~~~~~~~-----~LS 142 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYPS-----NLS 142 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTT---CCTTHHHHHHHHHHHHHSTTTTTSSCBS-----CCC
T ss_pred ECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCCHHHHCCHH-----HCC
T ss_conf 08755511554166430225222799649999999999849---9989999999999997699035548943-----499
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHC
Q ss_conf 88999999999996199776994999999999999999999998848-988999914898889998713
Q 000907 815 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 815 gGerkrl~ia~~l~~~p~illlDEptsgLD~~~~~~i~~~l~~~~~~-~~tvi~~~hqp~~~i~~~fd~ 882 (1230)
||||||++|||+|+.+|++|++||||+|||+.++..+++.|+++.++ |.|+|+++|... ++..+.|+
T Consensus 143 GG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dr 210 (240)
T d3dhwc1 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDC 210 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSE
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCE
T ss_conf 999989998640105898687446556589888567999999998646978999838999-99986999
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.4e-45 Score=302.82 Aligned_cols=194 Identities=21% Similarity=0.278 Sum_probs=169.5
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECC
Q ss_conf 68942499995672101145237832575342899957729999959999499999989599989718999999895168
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++.+|+++++. . .+|+|||+.+++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 i~v~nlsk~y~-------------~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p--~sG~I~~~G~~i~ 65 (229)
T d3d31a2 2 IEIESLSRKWK-------------N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVT 65 (229)
T ss_dssp EEEEEEEEECS-------------S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------C-EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEECC
T ss_conf 89998999949-------------9-788433789879989999989998299999999647688--8788999567346
Q ss_pred H-HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 0-012455999714886699999999999999820898999999999999999991998433232359999888988999
Q 000907 741 Q-ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 819 (1230)
Q Consensus 741 ~-~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerk 819 (1230)
. ...++.+|||+|++.++|.+||+||+.|...++... . +++++++++.+++.+..|..+. .|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~---~---~~~~~~~l~~~~l~~~~~~~~~-----~LSGG~~Q 134 (229)
T d3d31a2 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK---D---PKRVLDTARDLKIEHLLDRNPL-----TLSGGEQQ 134 (229)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCC---C---HHHHHHHHHHTTCTTTTTSCGG-----GSCHHHHH
T ss_pred CCCHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHCCCC---H---HHHHHHHHHHHCCHHHHHCCHH-----HCCHHHHC
T ss_conf 52165740561512111174665778888877640553---8---9999999998256555758955-----47999840
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHC
Q ss_conf 99999999619977699499999999999999999999884-8988999914898889998713
Q 000907 820 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 820 rl~ia~~l~~~p~illlDEptsgLD~~~~~~i~~~l~~~~~-~~~tvi~~~hqp~~~i~~~fd~ 882 (1230)
|++|||+|+.+|++++|||||+|||+.++..+++.++++.+ .|.|+|+++|.+. ++..+.|+
T Consensus 135 RvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~dr 197 (229)
T d3d31a2 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADR 197 (229)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSE
T ss_pred CHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCE
T ss_conf 1403043443677144347876799899999999999998647968999749999-99996999
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=9.8e-45 Score=298.12 Aligned_cols=199 Identities=24% Similarity=0.319 Sum_probs=176.4
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 36894249999567210114523783257534289995772999995999949999998959998971899999989516
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.|+.+|++.++ +++.+|+|+|+.+++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 2 aI~v~nl~k~y-------------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p--~~G~i~i~G~~i 66 (238)
T d1vpla_ 2 AVVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP--SSGIVTVFGKNV 66 (238)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEET
T ss_pred CEEEEEEEEEE-------------CCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEEC
T ss_conf 78999589999-------------999998062568848979999999999999999999669887--888799986724
Q ss_pred CH--HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 80--0124559997148866999999999999998208989999999999999999919984332323599998889889
Q 000907 740 NQ--ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQ 817 (1230)
Q Consensus 740 ~~--~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGe 817 (1230)
.. ...++.++|++|++.+++++|+.|++.|.+.++. ....+.++.++.+++.+++.+..+..++ .+||||
T Consensus 67 ~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~ 138 (238)
T d1vpla_ 67 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGM 138 (238)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHH
T ss_pred CCCHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHHHHH-----HCCHHH
T ss_conf 46839887218675001546878667788898998617---9989999999999986797888850453-----379989
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHC
Q ss_conf 99999999996199776994999999999999999999998848988999914898889998713
Q 000907 818 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 818 rkrl~ia~~l~~~p~illlDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~hqp~~~i~~~fd~ 882 (1230)
|||++||++|+.+|++++|||||+|||+.++..+++.+++++++|+||++++|++. ++....|+
T Consensus 139 ~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~dr 202 (238)
T d1vpla_ 139 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDR 202 (238)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSE
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCE
T ss_conf 89999999986599988733798897989999999999999965998999959899-99996999
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.1e-43 Score=291.31 Aligned_cols=200 Identities=22% Similarity=0.256 Sum_probs=171.3
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 36894249999567210114523783257534289995772999995999949999998959998971899999989516
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.|+.+|++.++ +...+|+|||+.+++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 2 ~Lev~nl~k~y-------------g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p--~~G~I~~~G~~i 66 (258)
T d1b0ua_ 2 KLHVIDLHKRY-------------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGAIIVNGQNI 66 (258)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEEEEEEEE-------------CCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCCEEECCEEE
T ss_conf 69999789998-------------999988150668869979999989998299999999747667--899779999993
Q ss_pred CH----------------HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-CC
Q ss_conf 80----------------01245599971488669999999999999982089899999999999999999199843-32
Q 000907 740 NQ----------------ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPL-RQ 802 (1230)
Q Consensus 740 ~~----------------~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~ 802 (1230)
.. ...++.+|||+|++.+++.+||.|++.+..... ......+.++++.++++.+++.+. .+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~ 144 (258)
T d1b0ua_ 67 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDERAQG 144 (258)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred CCCCCCCHHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCCCHHHHC
T ss_conf 367752000023517679997454489983323141101021365657876--299989999999999998299524430
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHC
Q ss_conf 32359999888988999999999996199776994999999999999999999998848988999914898889998713
Q 000907 803 ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 803 ~~~g~~~~~~lSgGerkrl~ia~~l~~~p~illlDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~hqp~~~i~~~fd~ 882 (1230)
..+ ..||||||||++|||+|+.+|+++++||||+|||+.++..+++.|++++++|.|+|+++|.+. ++..+.|+
T Consensus 145 ~~p-----~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adr 218 (258)
T d1b0ua_ 145 KYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 218 (258)
T ss_dssp SCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSE
T ss_pred CCC-----CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHH-HHHHHCCE
T ss_conf 682-----205677888989999984399878852455568878888998765541036883389948999-99986999
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=7.8e-44 Score=292.36 Aligned_cols=199 Identities=22% Similarity=0.320 Sum_probs=167.4
Q ss_pred CEEEEEEEEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEE
Q ss_conf 03689424999956721011452378325753428999577299999599994999999895999897189999998951
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
.-++.+|++.++ +++.+|+|||+.+++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 5 ~~Lev~~l~k~y-------------g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p--~~G~I~~~G~~ 69 (240)
T d1ji0a_ 5 IVLEVQSLHVYY-------------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQD 69 (240)
T ss_dssp EEEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred EEEEEEEEEEEE-------------CCEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCCC
T ss_conf 079996189998-------------998888302578889979999999998599999999678888--80389842443
Q ss_pred CCH---HC-CCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCC
Q ss_conf 680---01-2455999714886699999999999999820898999999999999999991-998433232359999888
Q 000907 739 KNQ---ET-FTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELV-ELNPLRQALVGLPGVNGL 813 (1230)
Q Consensus 739 ~~~---~~-~~~~~~yv~q~~~~~~~ltv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l-~l~~~~~~~~g~~~~~~l 813 (1230)
... .. .+..++|++|+..+++.+||+|++.+.+..+.. .+..++.++++++.+ ++.+..+..++ .|
T Consensus 70 i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~L 140 (240)
T d1ji0a_ 70 ITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD----KEGIKRDLEWIFSLFPRLKERLKQLGG-----TL 140 (240)
T ss_dssp CTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCC----SSHHHHHHHHHHHHCHHHHTTTTSBSS-----SS
T ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHCHHHHHHCCHH-----HC
T ss_conf 446608888874235567655457763699999988873278----889999999999874176888758543-----38
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHC
Q ss_conf 988999999999996199776994999999999999999999998848988999914898889998713
Q 000907 814 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 814 SgGerkrl~ia~~l~~~p~illlDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~hqp~~~i~~~fd~ 882 (1230)
|||||||++|||+|+.+|++|+|||||+|||+.++..+++.+++++++|.||++++|... ++....|+
T Consensus 141 SGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~dr 208 (240)
T d1ji0a_ 141 SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHY 208 (240)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSE
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCE
T ss_conf 999999999999998299874003988679999999999999999968998999958899-99996999
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=5e-44 Score=293.58 Aligned_cols=202 Identities=24% Similarity=0.257 Sum_probs=171.7
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 36894249999567210114523783257534289995772999995999949999998959998971899999989516
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
-++.+|++.++ ++.++|+|||+.+++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 4 iL~v~nlsk~y-------------g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p--~~G~I~~~g~~i 68 (254)
T d1g6ha_ 4 ILRTENIVKYF-------------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDI 68 (254)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEEEEEEEE-------------CCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEEC
T ss_conf 69997789997-------------996887121799889979999999998499999999779768--873799999966
Q ss_pred CH---H-CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCC----------CCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 80---0-124559997148866999999999999998208----------989999999999999999919984332323
Q 000907 740 NQ---E-TFTRISGYCEQNDIHSPYVTVYESLLYSAWLRL----------SSEVNSKTREMFVEEVMELVELNPLRQALV 805 (1230)
Q Consensus 740 ~~---~-~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~lr~----------~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~ 805 (1230)
.. . ..+..++|++|+..+++.+||.||+.++...+. ......+...++++++++.+++.+..|..+
T Consensus 69 ~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (254)
T d1g6ha_ 69 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 148 (254)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCH
T ss_conf 40569999983387257764247887423214301333034504566542135328999999999987619630205953
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHC
Q ss_conf 59999888988999999999996199776994999999999999999999998848988999914898889998713
Q 000907 806 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 806 g~~~~~~lSgGerkrl~ia~~l~~~p~illlDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~hqp~~~i~~~fd~ 882 (1230)
+ .||||||||++|||+|+.+|++++|||||+|||+.++..+++.+++++++|.||++++|+.. ++.+..|+
T Consensus 149 ~-----~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Dr 219 (254)
T d1g6ha_ 149 G-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDH 219 (254)
T ss_dssp G-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSE
T ss_pred H-----HCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCE
T ss_conf 5-----69918888999999997592723243976569999999999999999978998999947699-99986999
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.3e-42 Score=284.71 Aligned_cols=196 Identities=28% Similarity=0.424 Sum_probs=157.9
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 36894249999567210114523783257534289995772999995999949999998959998971899999989516
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.|+|+|++|+|+. +.+.+|+|||+.+++||.+||+||||||||||+++|.|..++ .+|+|.+||.+.
T Consensus 1 eI~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i 67 (241)
T d2pmka1 1 DITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGHDL 67 (241)
T ss_dssp EEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEET
T ss_pred CEEEEEEEEEECC-----------CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCC--CCCEEEECCEEE
T ss_conf 9299999999089-----------996037424899849999999999999899999999735788--888999999994
Q ss_pred C---HHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC-------CCCCCCCCCCCC
Q ss_conf 8---001245599971488669999999999999982089899999999999999999199-------843323235999
Q 000907 740 N---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVEL-------NPLRQALVGLPG 809 (1230)
Q Consensus 740 ~---~~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l-------~~~~~~~~g~~~ 809 (1230)
. ...+++.++||+|++.+++ .|++||+.+.. .....++ +++..+..++ ..-.++.++..+
T Consensus 68 ~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~~~-----~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~t~i~~~g 137 (241)
T d2pmka1 68 ALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN-----PGMSVEK----VIYAAKLAGAHDFISELREGYNTIVGEQG 137 (241)
T ss_dssp TTSCHHHHHHHEEEECSSCCCTT-SBHHHHHCTTS-----TTCCHHH----HHHHHHHHTCHHHHTTSTTGGGSBCSTTT
T ss_pred CCCCHHHHHCEEEEEECCCCCCC-CCCCCCCCCCC-----CCCCHHH----HHHHHHHHHHHHHHHHHHCCHHHHCCCCC
T ss_conf 40024655352889824465578-40003522357-----5543888----99999997557888763201344327878
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHC
Q ss_conf 9888988999999999996199776994999999999999999999998848988999914898889998713
Q 000907 810 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 810 ~~~lSgGerkrl~ia~~l~~~p~illlDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~hqp~~~i~~~fd~ 882 (1230)
..||||||||++|||+|+.+|+|++|||||++||+.++..+++.|+++. +++|+|+++|+++. ...+|+
T Consensus 138 -~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~--~~~~D~ 206 (241)
T d2pmka1 138 -AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST--VKNADR 206 (241)
T ss_dssp -TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG--GTTSSE
T ss_pred -CCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCHHH--HHHCCE
T ss_conf -8669889898754434441651355647765559899999999999985-89989999788999--984999
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=5.2e-43 Score=287.13 Aligned_cols=178 Identities=25% Similarity=0.378 Sum_probs=158.2
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECCH-HCCCCEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 428999577299999599994999999895999897189999998951680-0124559997148866999999999999
Q 000907 691 GVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ-ETFTRISGYCEQNDIHSPYVTVYESLLY 769 (1230)
Q Consensus 691 ~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~yv~q~~~~~~~ltv~e~l~f 769 (1230)
|||+.+. ||.++|+||||||||||+++|+|..++ .+|+|.+||.+... ...++.+|||+|++.++|.+||+||+.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p--~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCC--CCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHH
T ss_conf 9999749-979999979998099999999739998--9628999999988699899285225231443522015576665
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
Q ss_conf 99820898999999999999999991998433232359999888988999999999996199776994999999999999
Q 000907 770 SAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 849 (1230)
Q Consensus 770 ~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkrl~ia~~l~~~p~illlDEptsgLD~~~~~ 849 (1230)
+ ++ ..+..+++++++++++.+||.+..+..+. .|||||||||+|||||+.+|++++|||||+|||+.++.
T Consensus 94 ~--l~---~~~~~~~~~~v~~~l~~~gl~~~~~~~~~-----~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 G--LR---NVERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp T--CT---TSCHHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred H--HC---CCCHHHHHHHHHHHHHHCCCHHHHHCCHH-----HCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHH
T ss_conf 3--23---36778899999999986383756657944-----48999989999987775167706752865558879999
Q ss_pred HHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHC
Q ss_conf 999999998848-988999914898889998713
Q 000907 850 VVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 850 ~i~~~l~~~~~~-~~tvi~~~hqp~~~i~~~fd~ 882 (1230)
.+++.++++.++ |.|+|+++|++. ++..+.|+
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adr 196 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADE 196 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSE
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCE
T ss_conf 9999999998743976999818999-99996999
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.9e-42 Score=283.53 Aligned_cols=198 Identities=24% Similarity=0.354 Sum_probs=160.4
Q ss_pred CCEEEEEEEEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCE
Q ss_conf 70368942499995672101145237832575342899957729999959999499999989599989718999999895
Q 000907 658 PFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGY 737 (1230)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 737 (1230)
...|+++|++|+++. +.+++|+|||+.+++||.+||+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 14 ~g~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~ 80 (255)
T d2hyda1 14 QGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGH 80 (255)
T ss_dssp SCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC--SEEEEEETTE
T ss_pred CCEEEEEEEEEEECC-----------CCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCCCCE
T ss_conf 887999988999599-----------997606443899839989999889998099999999712786--3000153998
Q ss_pred ECC---HHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-------CCCCCCCC
Q ss_conf 168---00124559997148866999999999999998208989999999999999999919984-------33232359
Q 000907 738 PKN---QETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGL 807 (1230)
Q Consensus 738 ~~~---~~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~g~ 807 (1230)
+.. ...+++.++||+|++.+++ .||+||+.|+. ..... +.+.++++..++.+ -.++.++.
T Consensus 81 ~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~-----~~~~~----~~~~~al~~~~l~~~i~~lp~gl~t~i~~ 150 (255)
T d2hyda1 81 NIKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGR-----PTATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGE 150 (255)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGC-----SSCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred ECCCCCHHHHHHEEEEEECCCCCCC-CCHHHHHHCCC-----CCCCH----HHHHHHHHHHCCHHHHHHCCCCCCCHHCC
T ss_conf 7530788886341456510156899-87999985158-----67999----99999999969799997362420103338
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHC
Q ss_conf 999888988999999999996199776994999999999999999999998848988999914898889998713
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGerkrl~ia~~l~~~p~illlDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~hqp~~~i~~~fd~ 882 (1230)
.+ ..||||||||++|||+|+.+|+|++|||||++||+.++..+++.|+++. +++|+|+++|+++ . ...+|+
T Consensus 151 ~g-~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~-~~~TvI~itH~~~-~-~~~~D~ 221 (255)
T d2hyda1 151 RG-VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS-T-ITHADK 221 (255)
T ss_dssp GG-TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG-G-TTTCSE
T ss_pred CC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCHH-H-HHHCCE
T ss_conf 88-9849999999999999855998999837654479779999999999875-3888999968999-9-985999
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-42 Score=285.30 Aligned_cols=202 Identities=22% Similarity=0.311 Sum_probs=158.9
Q ss_pred CEEEEEEEEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEE
Q ss_conf 03689424999956721011452378325753428999577299999599994999999895999897189999998951
Q 000907 659 FSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
..|+++|++++|+.. ..+.+|+|||+.+++||.+||+||||||||||+++|.|..++ .+|+|.+||.+
T Consensus 10 g~I~~~nvsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p--~~G~I~i~g~~ 77 (251)
T d1jj7a_ 10 GLVQFQDVSFAYPNR----------PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP--TGGQLLLDGKP 77 (251)
T ss_dssp CCEEEEEEEECCTTS----------TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred CEEEEEEEEEECCCC----------CCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEE
T ss_conf 369999989988999----------999767443899849989999999998499999998614378--76899889985
Q ss_pred CCH---HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHH-----HHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 680---012455999714886699999999999999820898999999999-----999999991998433232359999
Q 000907 739 KNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREM-----FVEEVMELVELNPLRQALVGLPGV 810 (1230)
Q Consensus 739 ~~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~lr~~~~~~~~~~~~-----~v~~~l~~l~l~~~~~~~~g~~~~ 810 (1230)
... ..+++.++||+|++.+++ .|++|++.++.. .........+ ...+.++ ++.+-.++.++.. .
T Consensus 78 i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~----~~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~~-~ 149 (251)
T d1jj7a_ 78 LPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLT----QKPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDEA-G 149 (251)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCS----SCCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCSS-C
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHCC-C
T ss_conf 311013788877654045650027-634655454210----1302788999999998999998--5612111367516-7
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHC
Q ss_conf 88898899999999999619977699499999999999999999999884-8988999914898889998713
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGerkrl~ia~~l~~~p~illlDEptsgLD~~~~~~i~~~l~~~~~-~~~tvi~~~hqp~~~i~~~fd~ 882 (1230)
..||||||||++|||+|+.+|+|++|||||++||+.++..+++.|+++.+ .++|+|+++|+++ ....+|+
T Consensus 150 ~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDr 220 (251)
T d1jj7a_ 150 SQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADH 220 (251)
T ss_dssp SSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSE
T ss_pred CCCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH--HHHHCCE
T ss_conf 6689547048998604456870787167576568536899999999976506989999959799--9985999
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=2.3e-43 Score=289.39 Aligned_cols=195 Identities=27% Similarity=0.427 Sum_probs=157.0
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECC
Q ss_conf 68942499995672101145237832575342899957729999959999499999989599989718999999895168
Q 000907 661 LTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKN 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 740 (1230)
++++|++|+|+ +.+.+|+|||+.++|||.+||+||||||||||+++|+|..++ .+|+|.+||.+..
T Consensus 2 le~knvsf~Y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEEST
T ss_pred EEEEEEEEECC------------CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCC--CCCEEEECCEEEC
T ss_conf 79998899879------------998414225899859999999999999799999999996098--9877988998844
Q ss_pred H---HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC-------CCCCCCCCCCCC
Q ss_conf 0---012455999714886699999999999999820898999999999999999991998-------433232359999
Q 000907 741 Q---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELN-------PLRQALVGLPGV 810 (1230)
Q Consensus 741 ~---~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-------~~~~~~~g~~~~ 810 (1230)
. ..+++.++||+|++.+++. |++||+.+... ....... +++.++..++. ...++.++..+
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~g- 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLE----GDYTDED----LWQVLDLAFARSFVENMPDQLNTEVGERG- 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTT----SCSCHHH----HHHHHHHHTCTTTTTSSTTGGGCEESTTS-
T ss_pred CCCHHHHHHHEEEECCCCCCCCC-CHHHHEECCCC----CCCCHHH----HHHHHHHHHHHHHHCCCCCCCCCCCCCCC-
T ss_conf 24678887436797566545785-34543012445----5542356----77899999755542037421015236878-
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHC
Q ss_conf 888988999999999996199776994999999999999999999998848988999914898889998713
Q 000907 811 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGerkrl~ia~~l~~~p~illlDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~hqp~~~i~~~fd~ 882 (1230)
..||||||||++|||||+.+|+|++|||||++||+.++..+++.|++++ +|+|+|+++|+++ . ...+|+
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~-~-~~~~D~ 206 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-T-IVDADK 206 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-H-HHHCSE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH-H-HHHCCE
T ss_conf 9879999999999999852998999658865569889999988788871-7998999978799-9-984999
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=9.3e-42 Score=279.16 Aligned_cols=199 Identities=23% Similarity=0.295 Sum_probs=158.8
Q ss_pred CCEEEEEEEEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCE
Q ss_conf 70368942499995672101145237832575342899957729999959999499999989599989718999999895
Q 000907 658 PFSLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGY 737 (1230)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~ 737 (1230)
...|+++|++++|+. +..++|+|||+.+++||.+||+||||||||||+++|+|..++ .+|+|.+||.
T Consensus 11 ~g~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~ 77 (253)
T d3b60a1 11 TGDLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGH 77 (253)
T ss_dssp CCCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC--SEEEEEETTE
T ss_pred CEEEEEEEEEEEECC-----------CCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCC
T ss_conf 307999988999299-----------997635332899859999999999998599999998621688--8468987880
Q ss_pred ECCH---HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-------CCCCCCCC
Q ss_conf 1680---0124559997148866999999999999998208989999999999999999919984-------33232359
Q 000907 738 PKNQ---ETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNP-------LRQALVGL 807 (1230)
Q Consensus 738 ~~~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~g~ 807 (1230)
+... ..+++.++||+|++.++. .|+++++.+.. +.....+ .++++++..++.+ -.++.++.
T Consensus 78 ~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~n~~~~~----~~~~~~~----~i~~a~~~~~l~~~i~~l~~gl~t~~~~ 148 (253)
T d3b60a1 78 DLREYTLASLRNQVALVSQNVHLFN-DTVANNIAYAR----TEEYSRE----QIEEAARMAYAMDFINKMDNGLDTIIGE 148 (253)
T ss_dssp ETTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTT----TSCCCHH----HHHHHHHTTTCHHHHHHSTTGGGSBCCT
T ss_pred CCCHHHHHHHHHEEEEEEECCCCCC-CCHHHHHHHCC----CCCCCHH----HHHHHHHHHHHHHHHHHCCCCCHHHHCC
T ss_conf 1211106654206879950254478-62024332057----2208999----9999999981799997355441014348
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHC
Q ss_conf 999888988999999999996199776994999999999999999999998848988999914898889998713
Q 000907 808 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 808 ~~~~~lSgGerkrl~ia~~l~~~p~illlDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~hqp~~~i~~~fd~ 882 (1230)
. ...||||||||++|||||+.+|+|++|||||++||+.++..+++.|+++. +++|+|+++|+++ . ...+|+
T Consensus 149 ~-~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~-~-~~~~D~ 219 (253)
T d3b60a1 149 N-GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS-T-IEQADE 219 (253)
T ss_dssp T-SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGG-G-TTTCSE
T ss_pred C-CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH-H-HHHCCE
T ss_conf 8-89849999999999999954998899516444589889999999998752-2788999988799-9-985999
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.4e-38 Score=257.50 Aligned_cols=183 Identities=21% Similarity=0.308 Sum_probs=151.2
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEEC
Q ss_conf 36894249999567210114523783257534289995772999995999949999998959998971899999989516
Q 000907 660 SLTFDEITYSVDMPQEMKRRGVHDDKLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPK 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 739 (1230)
.++++|+++.++ +++|+|+|+.+++||+++|+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 2 ~lev~~ls~~y~--------------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p--~~G~I~~~g~~i 65 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--------------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVPI 65 (200)
T ss_dssp EEEEEEEEEESS--------------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred EEEEEEEEEEEC--------------CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEEH
T ss_conf 599998999939--------------9288420889859989999999997199999999662056--778899998962
Q ss_pred CHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 80012455999714886699999999999999820898999999999999999991998433232359999888988999
Q 000907 740 NQETFTRISGYCEQNDIHSPYVTVYESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK 819 (1230)
Q Consensus 740 ~~~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerk 819 (1230)
.. .+..++|++|+..++..+|++|++.+.+.++... ... ..+.+.++.+++.+..+ .+ ..|||||||
T Consensus 66 ~~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~-~~-----~~LSgG~~q 132 (200)
T d1sgwa_ 66 TK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-VNK----NEIMDALESVEVLDLKK-KL-----GELSQGTIR 132 (200)
T ss_dssp GG--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC-CCH----HHHHHHHHHTTCCCTTS-BG-----GGSCHHHHH
T ss_pred HH--HCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCC-CCH----HHHHHHHHHCCCCCCCC-CC-----CCCCCCHHH
T ss_conf 67--3670899950135788828999999999754886-379----99999998748856301-26-----868971888
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 9999999961997769949999999999999999999988489889999148
Q 000907 820 RLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQ 871 (1230)
Q Consensus 820 rl~ia~~l~~~p~illlDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~hq 871 (1230)
|++||++|+.+|++++|||||+|||..++..+++.++++.+++.++|+++|+
T Consensus 133 rv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~ 184 (200)
T d1sgwa_ 133 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE 184 (200)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 8999998864998999868620169999999999999998679999999916
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-38 Score=258.24 Aligned_cols=180 Identities=22% Similarity=0.346 Sum_probs=152.0
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECCH---HCCCCEEEEECCCCCCCCCCCH
Q ss_conf 5753428999577299999599994999999895999897189999998951680---0124559997148866999999
Q 000907 687 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQ---ETFTRISGYCEQNDIHSPYVTV 763 (1230)
Q Consensus 687 ~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~q~~~~~~~ltv 763 (1230)
..|++||++|++||++||+||||||||||+++|+|..+ .+|+|.++|.+... ...+...+|++|+.......++
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v 89 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 89 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBH
T ss_pred CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC---CCEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCH
T ss_conf 15558888994898999998999809999999948879---955999999999869989998640245121357744209
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-------CCCEEEE
Q ss_conf 999999998208989999999999999999919984332323599998889889999999999961-------9977699
Q 000907 764 YESLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVA-------NPSIIFM 836 (1230)
Q Consensus 764 ~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkrl~ia~~l~~-------~p~illl 836 (1230)
.+.+.+... . +.+.+.++++++.+++.+..+..+. .||||||||++||++|+. +|+|++|
T Consensus 90 ~~~~~~~~~----~----~~~~~~~~~~~~~~~l~~~~~~~~~-----~LSgG~~Qrv~iA~al~~~~p~~~p~p~llll 156 (231)
T d1l7vc_ 90 WHYLTLHQH----D----KTRTELLNDVAGALALDDKLGRSTN-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLL 156 (231)
T ss_dssp HHHHHHHCS----C----TTCHHHHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEE
T ss_pred HHHHHHCCC----H----HHHHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 887641001----4----6689999999986598767676844-----56998899999999998517133899889997
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCC
Q ss_conf 49999999999999999999988489889999148988899987138
Q 000907 837 DEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDAG 883 (1230)
Q Consensus 837 DEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~hqp~~~i~~~fd~~ 883 (1230)
||||+|||+.++..+.+.+++++++|.|||+++|++. ++.+..|+.
T Consensus 157 DEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri 202 (231)
T d1l7vc_ 157 DEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRA 202 (231)
T ss_dssp SSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEE
T ss_conf 1877778989999999999999867999999967799-999979999
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.5e-38 Score=258.72 Aligned_cols=172 Identities=21% Similarity=0.308 Sum_probs=136.6
Q ss_pred CEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECCHHCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 32575342899957729999959999499999989599989718999999895168001245599971488669999999
Q 000907 685 KLVLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVY 764 (1230)
Q Consensus 685 ~~~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~ltv~ 764 (1230)
++++|+|+|+.+++||++||+||||||||||+++|+|..++ .+|.|.++|. ++|++|+..+++ .||+
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p--~~G~I~~~g~----------i~~v~Q~~~l~~-~tv~ 114 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA--SEGIIKHSGR----------VSFCSQFSWIMP-GTIK 114 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC--SEEEEECCSC----------EEEECSSCCCCS-EEHH
T ss_pred CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCE----------EEEEECCCCCCC-CEEE
T ss_conf 97677375999859999999989998299999999579747--8828999999----------999816430267-6032
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHH-------CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 999999982089899999999999999999-------1998433232359999888988999999999996199776994
Q 000907 765 ESLLYSAWLRLSSEVNSKTREMFVEEVMEL-------VELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 837 (1230)
Q Consensus 765 e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~-------l~l~~~~~~~~g~~~~~~lSgGerkrl~ia~~l~~~p~illlD 837 (1230)
|++.|.. ...... .+.+++. ..+....++.++.. ...||||||||++|||+|+.+|+|++||
T Consensus 115 eni~~~~------~~~~~~----~~~~~~~~~~~~~i~~l~~~~~~~~~~~-~~~LSgGqkQRv~lARaL~~~p~illLD 183 (281)
T d1r0wa_ 115 ENIIFGV------SYDEYR----YKSVVKACQLQQDITKFAEQDNTVLGEG-GVTLSGGQRARISLARAVYKDADLYLLD 183 (281)
T ss_dssp HHHTTTS------CCCHHH----HHHHHHHTTCHHHHTTSTTGGGCEECTT-CTTSCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred CCCCCCC------CCCCHH----HHHHHHHHHHHHHHHHCHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHCCCCHHHC
T ss_conf 1420333------456057----9999999776999984612332355554-2377999999999999998696351333
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHC
Q ss_conf 999999999999999999998848988999914898889998713
Q 000907 838 EPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 838 EptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~hqp~~~i~~~fd~ 882 (1230)
|||++||+.+...+++.+......++|+|+++|++. ....+|+
T Consensus 184 EPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~--~l~~aDr 226 (281)
T d1r0wa_ 184 SPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKME--HLRKADK 226 (281)
T ss_dssp SCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHH--HHHTCSE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHH--HHHHCCE
T ss_conf 855448989999999999988628999999925289--9985999
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.4e-38 Score=256.54 Aligned_cols=177 Identities=22% Similarity=0.341 Sum_probs=151.5
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 934347868998424799989923898754-3128876565455678898999999966128887530235612999861
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~l~~~~~~sG~V~inG~~~~~~~~-~~~~~yV~Q~d~l~~~lTVrE~L~F~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
|++|+|.+.. .+|+|++||.++++... +|.+|||+|++.+++.+||+||+.|+..+++.. .
T Consensus 43 l~~i~Gl~~p---~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~----------~----- 104 (232)
T d2awna2 43 LRMIAGLETI---TSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK----------K----- 104 (232)
T ss_dssp HHHHHTSSCC---SEEEEEESSSCCTTSCGGGTCEEEECSSCCC------------------------------------
T ss_pred HHHHHCCCCC---CCCEEEECCEECCCCCHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCC----------H-----
T ss_conf 9999658788---888899999977888644432223433420264333788978999875998----------8-----
Q ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 02998225689999873012122579999998198544544336876534763434124899987449705344179856
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~l~L~~~~dT~VG~~~~~gLSGGQKkRvsIA~aLv~~p~IllLDEPTSG 159 (1230)
++.++.++.+++.++|++..|..++ .|||||||||+|||||+.+|++++|||||||
T Consensus 105 -------------------~~~~~~v~~~l~~~~l~~~~~~~~~-----~LSGGqkQRvaiAraL~~~P~illlDEPts~ 160 (232)
T d2awna2 105 -------------------EVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 160 (232)
T ss_dssp -------------------CHHHHHHHHHHHHC--------------------------CHHHHHHTCCSEEEEESTTTT
T ss_pred -------------------HHHHHHHHHHHHHCCCHHHHHCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf -------------------9999999999975788656648965-----6999999999999997039988997588878
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 0358899999999987561698899995179945896100157854971998758112999
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iisi~qps~ei~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
||+.++.+|++.|+++.+..+.|++ .++|...++..++|++++|.+|++++.|+++++..
T Consensus 161 LD~~~~~~i~~~l~~l~~~~g~tii-~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 161 LDAALRVQMRIEISRLHKRLGRTMI-YVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCCEEE-EEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHH
T ss_conf 8988998999999999874298799-99489999999699999997999999808999973
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=4.6e-38 Score=255.68 Aligned_cols=177 Identities=21% Similarity=0.337 Sum_probs=150.6
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 934347868998424799989923898754-3128876565455678898999999966128887530235612999861
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~l~~~~~~sG~V~inG~~~~~~~~-~~~~~yV~Q~d~l~~~lTVrE~L~F~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
+++|+|.+.. .+|+|.+||.++++... ++.+|||+|++.+++++||+||+.|++.+++. .+.
T Consensus 49 l~~i~Gl~~p---~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~----------~~~---- 111 (239)
T d1v43a3 49 LRMIAGLEEP---TEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKF----------PKD---- 111 (239)
T ss_dssp HHHHHTSSCC---SEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CC----------CHH----
T ss_pred HHHHHCCCCC---CCCEEEECCEECCCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHCCC----------CHH----
T ss_conf 9999758999---87879991641354770001589980033534222099999999987399----------999----
Q ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 02998225689999873012122579999998198544544336876534763434124899987449705344179856
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~l~L~~~~dT~VG~~~~~gLSGGQKkRvsIA~aLv~~p~IllLDEPTSG 159 (1230)
++++.++.+++.++|++.+|..+. .|||||||||+|||||+.+|+|++|||||||
T Consensus 112 --------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~QRvaiAraL~~~P~iLllDEPts~ 166 (239)
T d1v43a3 112 --------------------EIDKRVRWAAELLQIEELLNRYPA-----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSN 166 (239)
T ss_dssp --------------------HHHHHHHHHHHHTTCGGGTTSCTT-----TCCSSCHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred --------------------HHHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHCCCCCCEEECCCCCC
T ss_conf --------------------999999999987598556609954-----6999998899997664049982430688666
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 0358899999999987561698899995179945896100157854971998758112999
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iisi~qps~ei~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
||+.++.+|++.++++.+..+.|++ .++|...++..++|+|++|.+|++++.|+++++..
T Consensus 167 LD~~~~~~i~~ll~~l~~~~g~tii-~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 226 (239)
T d1v43a3 167 LDAKLRVAMRAEIKKLQQKLKVTTI-YVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226 (239)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEE-EEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 8989998999999999873198079-99489999998699999998999999859999986
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.1e-37 Score=253.28 Aligned_cols=174 Identities=22% Similarity=0.316 Sum_probs=149.7
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 934347868998424799989923898754-3128876565455678898999999966128887530235612999861
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~l~~~~~~sG~V~inG~~~~~~~~-~~~~~yV~Q~d~l~~~lTVrE~L~F~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
|++|+|.+.. .+|+|+++|.++++... ++.+|||+|++.+++.+||+||+.|+..+++...
T Consensus 43 l~~l~Gl~~p---~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~--------------- 104 (229)
T d3d31a2 43 LELIAGFHVP---DSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD--------------- 104 (229)
T ss_dssp HHHHHTSSCC---SEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCC---------------
T ss_pred HHHHHCCCCC---CCCEEEECCEECCCCCHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCH---------------
T ss_conf 9999647688---8788999567346521657405615121111746657788888776405538---------------
Q ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 02998225689999873012122579999998198544544336876534763434124899987449705344179856
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~l~L~~~~dT~VG~~~~~gLSGGQKkRvsIA~aLv~~p~IllLDEPTSG 159 (1230)
++.++.+++.++|.+..|..++ .|||||||||+|||||+.+|++++|||||||
T Consensus 105 ----------------------~~~~~~~l~~~~l~~~~~~~~~-----~LSGG~~QRvaiAraL~~~P~iLllDEPts~ 157 (229)
T d3d31a2 105 ----------------------PKRVLDTARDLKIEHLLDRNPL-----TLSGGEQQRVALARALVTNPKILLLDEPLSA 157 (229)
T ss_dssp ----------------------HHHHHHHHHHTTCTTTTTSCGG-----GSCHHHHHHHHHHHHTTSCCSEEEEESSSTT
T ss_pred ----------------------HHHHHHHHHHHCCHHHHHCCHH-----HCCHHHHCCHHHHHHHHCCCCCEEECCCCCC
T ss_conf ----------------------9999999998256555758955-----4799984014030434436771443478767
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 0358899999999987561698899995179945896100157854971998758112999
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iisi~qps~ei~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
||+.++.++++.++++.+..+.| ++.++|...++..++|+|++|.+|++++.|+++++.+
T Consensus 158 LD~~~~~~i~~~l~~l~~~~g~t-ii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~ 217 (229)
T d3d31a2 158 LDPRTQENAREMLSVLHKKNKLT-VLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217 (229)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHCCCCE-EEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 99899999999999998647968-9997499999999699999997999999869999986
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=7.9e-38 Score=254.18 Aligned_cols=177 Identities=23% Similarity=0.301 Sum_probs=149.9
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCC-------CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 93434786899842479998992389875-------43128876565455678898999999966128887530235612
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV-------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELS 73 (1230)
Q Consensus 1 l~~Lag~l~~~~~~sG~V~inG~~~~~~~-------~~~~~~yV~Q~d~l~~~lTVrE~L~F~a~l~~~~~~~~~~~~~~ 73 (1230)
|++|+|.+.+ .+|+|.+||.++.... .++.+|||+|++.+++.+||+||+.|+...++. .
T Consensus 46 l~~i~gl~~p---~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~----------~ 112 (240)
T d1g2912 46 LRMIAGLEEP---SRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKV----------P 112 (240)
T ss_dssp HHHHHTSSCC---SEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTC----------C
T ss_pred HHHHHCCCCC---CCCEEEECCEEECCCCHHHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHCCC----------C
T ss_conf 9999648788---98989999998035664442453225512002212223101166763306877299----------9
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 99986102998225689999873012122579999998198544544336876534763434124899987449705344
Q 000907 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFM 153 (1230)
Q Consensus 74 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~l~L~~~~dT~VG~~~~~gLSGGQKkRvsIA~aLv~~p~IllL 153 (1230)
..+ +++.++.+++.++|++.+|..++ .||||||||++|||||+.+|+|++|
T Consensus 113 ~~e------------------------~~~~v~~~l~~~~l~~~~~~~p~-----~LSGGqkQRv~IAraL~~~P~iLll 163 (240)
T d1g2912 113 RQE------------------------IDQRVREVAELLGLTELLNRKPR-----ELSGGQRQRVALGRAIVRKPQVFLM 163 (240)
T ss_dssp HHH------------------------HHHHHHHHHHHHTCGGGTTCCGG-----GSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred HHH------------------------HHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 899------------------------99999999987599667629933-----4999999999999998269988982
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 1798560358899999999987561698899995179945896100157854971998758112999
Q 000907 154 DEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 154 DEPTSGLDs~sa~~I~~~L~~la~~~~~t~iisi~qps~ei~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
||||+|||+.++.+|++.++++.+..|.| ++.++|...++..++|+|++|.+|++++.|+++++..
T Consensus 164 DEPt~~LD~~~~~~i~~~l~~l~~~~g~t-vi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 164 DEPLSNLDAKLRVRMRAELKKLQRQLGVT-TIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp ECTTTTSCHHHHHHHHHHHHHHHHHHTCE-EEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCE-EEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 58876569899989999999998636988-9999599999999699999998999999859999982
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.5e-37 Score=252.41 Aligned_cols=175 Identities=23% Similarity=0.349 Sum_probs=148.4
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 934347868998424799989923898754-3128876565455678898999999966128887530235612999861
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVP-QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAA 79 (1230)
Q Consensus 1 l~~Lag~l~~~~~~sG~V~inG~~~~~~~~-~~~~~yV~Q~d~l~~~lTVrE~L~F~a~l~~~~~~~~~~~~~~~~e~~~ 79 (1230)
|++|+|.+.. .+|+|.+||.++++... ++.+|||+|++.+++++||+||+.|+.+ .. .+.+.
T Consensus 41 l~~i~Gl~~p---~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~--~~----------~~~~~-- 103 (240)
T d2onka1 41 LELIAGIVKP---DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLR--NV----------ERVER-- 103 (240)
T ss_dssp HHHHHTSSCC---SEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCT--TS----------CHHHH--
T ss_pred HHHHHCCCCC---CCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHHHHC--CC----------CHHHH--
T ss_conf 9999739998---9628999999988699899285225231443522015576665323--36----------77889--
Q ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 02998225689999873012122579999998198544544336876534763434124899987449705344179856
Q 000907 80 KIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTG 159 (1230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~l~L~~~~dT~VG~~~~~gLSGGQKkRvsIA~aLv~~p~IllLDEPTSG 159 (1230)
++.++++++.+||.+..|..+. .|||||||||+||||++.+|++++|||||||
T Consensus 104 ----------------------~~~v~~~l~~~gl~~~~~~~~~-----~LSGG~kQRvaiAral~~~P~illlDEPts~ 156 (240)
T d2onka1 104 ----------------------DRRVREMAEKLGIAHLLDRKPA-----RLSGGERQRVALARALVIQPRLLLLDEPLSA 156 (240)
T ss_dssp ----------------------HHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHHHHHHHHTTCCSSBEEESTTSS
T ss_pred ----------------------HHHHHHHHHHCCCHHHHHCCHH-----HCCHHHHHHHHHHHHHHCCCCCEEECCCCCC
T ss_conf ----------------------9999999986383756657944-----4899998999998777516770675286555
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 0358899999999987561698899995179945896100157854971998758112999
Q 000907 160 LDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 160 LDs~sa~~I~~~L~~la~~~~~t~iisi~qps~ei~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
||+.++..+++.++++.+..+.|++ .++|...++...+|+|++|.+|+++++|+++++..
T Consensus 157 LD~~~~~~i~~~i~~l~~~~g~tvi-~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~ 216 (240)
T d2onka1 157 VDLKTKGVLMEELRFVQREFDVPIL-HVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCCEE-EEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHC
T ss_conf 8879999999999999874397699-98189999999699999998999999906999832
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.8e-37 Score=250.65 Aligned_cols=176 Identities=23% Similarity=0.293 Sum_probs=149.5
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCCC------CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 934347868998424799989923898754------31288765654556788989999999661288875302356129
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVP------QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSR 74 (1230)
Q Consensus 1 l~~Lag~l~~~~~~sG~V~inG~~~~~~~~------~~~~~yV~Q~d~l~~~lTVrE~L~F~a~l~~~~~~~~~~~~~~~ 74 (1230)
|++|+|.... .+|+|.++|+++..... |+.+|||+|++.+++.+||+||+.|+.++++..
T Consensus 48 l~~i~Gl~~p---~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~----------- 113 (240)
T d3dhwc1 48 IRCVNLLERP---TEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTP----------- 113 (240)
T ss_dssp HHHHTTSSCC---SEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCC-----------
T ss_pred HHHHCCCCCC---CCCCEEECCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-----------
T ss_conf 9987588636---67732886768520875551155416643022522279964999999999984999-----------
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEE
Q ss_conf 99861029982256899998730121225799999981985445443368765347634341248999874497053441
Q 000907 75 REKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMD 154 (1230)
Q Consensus 75 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~l~L~~~~dT~VG~~~~~gLSGGQKkRvsIA~aLv~~p~IllLD 154 (1230)
.+++++.++.+|+.+||++.+|..++ .|||||||||+|||||+.+|++++||
T Consensus 114 -----------------------~~~~~~~v~~~L~~vgL~~~~~~~~~-----~LSGG~~QRvaiAraL~~~P~lLllD 165 (240)
T d3dhwc1 114 -----------------------KDEVKRRVTELLSLVGLGDKHDSYPS-----NLSGGQKQRVAIARALASNPKVLLCD 165 (240)
T ss_dssp -----------------------TTHHHHHHHHHHHHHSTTTTTSSCBS-----CCCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred -----------------------HHHHHHHHHHHHHHCCCCHHHHCCHH-----HCCHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf -----------------------89999999999997699035548943-----49999998999864010589868744
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHH
Q ss_conf 79856035889999999998756169889999517994589610015785497199875811299
Q 000907 155 EISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 155 EPTSGLDs~sa~~I~~~L~~la~~~~~t~iisi~qps~ei~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
|||+|||+.++.+|++.|+++.+..+.|++ .++|...++...+|++++|.+|++++.|+++++.
T Consensus 166 EPt~~LD~~~~~~i~~~l~~l~~~~g~tvi-~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 166 EATSALDPATTRSILELLKDINRRLGLTIL-LITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 229 (240)
T ss_dssp SGGGSSCHHHHHHHHHHHHHHHHHHCCEEE-EEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCEEE-EECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 655658988856799999999864697899-9838999999869999999799999987999997
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.7e-37 Score=252.10 Aligned_cols=177 Identities=20% Similarity=0.257 Sum_probs=148.8
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCC------CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 93434786899842479998992389875------431288765654556788989999999661288875302356129
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSR 74 (1230)
Q Consensus 1 l~~Lag~l~~~~~~sG~V~inG~~~~~~~------~~~~~~yV~Q~d~l~~~lTVrE~L~F~a~l~~~~~~~~~~~~~~~ 74 (1230)
|++|+|...+ .+|+|+++|.++.... .++.+|||+|++.+++.+||+||+.|+.+..+. ..
T Consensus 48 l~~i~gl~~p---~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~----------~~ 114 (242)
T d1oxxk2 48 MRIIAGLDVP---STGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKM----------SK 114 (242)
T ss_dssp HHHHHTSSCC---SEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSC----------CH
T ss_pred HHHHHCCCCC---CCCEEEECCEEEECCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHCC----------CH
T ss_conf 9999758688---8745999999951373111531204514773043346666577776655676137----------99
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEE
Q ss_conf 99861029982256899998730121225799999981985445443368765347634341248999874497053441
Q 000907 75 REKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMD 154 (1230)
Q Consensus 75 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~l~L~~~~dT~VG~~~~~gLSGGQKkRvsIA~aLv~~p~IllLD 154 (1230)
. ++++.++++++.+||.+..|..++ .|||||||||+|||||+.+|++++||
T Consensus 115 ~------------------------~~~~~v~~~l~~~gL~~~~~~~p~-----~LSGGqkQRvaiARaL~~~P~llllD 165 (242)
T d1oxxk2 115 E------------------------EIRKRVEEVAKILDIHHVLNHFPR-----ELSGAQQQRVALARALVKDPSLLLLD 165 (242)
T ss_dssp H------------------------HHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred H------------------------HHHHHHHHHHHHCCHHHHHHCCHH-----HCCHHHHHHHHHHHHHHHCCCCEEEC
T ss_conf 9------------------------999999999866591766648954-----59999985899875776046614544
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 798560358899999999987561698899995179945896100157854971998758112999
Q 000907 155 EISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 155 EPTSGLDs~sa~~I~~~L~~la~~~~~t~iisi~qps~ei~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|||+|||+.++.++++.++++.+..+.| ++.++|...++..++|++++|.+|++++.|+++++..
T Consensus 166 EPt~~LD~~~~~~i~~~i~~l~~~~g~t-vi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 166 EPFSNLDARMRDSARALVKEVQSRLGVT-LLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp STTTTSCGGGHHHHHHHHHHHHHHHCCE-EEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCE-EEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 7866799899889989999998635987-9999799999999699999998999999869999986
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.3e-35 Score=236.75 Aligned_cols=174 Identities=20% Similarity=0.216 Sum_probs=140.4
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCCCC-------CEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 9343478689984247999899238987543-------128876565455678898999999966128887530235612
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQ-------RTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELS 73 (1230)
Q Consensus 1 l~~Lag~l~~~~~~sG~V~inG~~~~~~~~~-------~~~~yV~Q~d~l~~~lTVrE~L~F~a~l~~~~~~~~~~~~~~ 73 (1230)
|++|+|.... .+|+|+++|.++.....+ +.+|||+|++.+++.+||+||+.|+..++..... .
T Consensus 48 l~~i~gl~~p---~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~-------~ 117 (230)
T d1l2ta_ 48 LNIIGCLDKP---TEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAM-------S 117 (230)
T ss_dssp HHHHTTSSCC---SEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCC-------C
T ss_pred HHHCCCCCCC---CCCEEEECCEECCCCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCC-------C
T ss_conf 5750688777---76626999998576885551231255577880412417686688877578887224789-------9
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 9998610299822568999987301212257999999819854-454433687653476343412489998744970534
Q 000907 74 RREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDV-CADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALF 152 (1230)
Q Consensus 74 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~l~L~~-~~dT~VG~~~~~gLSGGQKkRvsIA~aLv~~p~Ill 152 (1230)
..+ +.+.+..+|+.++|++ .+|..+ ..|||||||||+|||||+.+|+|++
T Consensus 118 ~~~------------------------~~~~~~~~l~~~~L~~~~~~~~p-----~~LSGGqkQRvaIAraL~~~P~lLl 168 (230)
T d1l2ta_ 118 GEE------------------------RRKRALECLKMAELEERFANHKP-----NQLSGGQQQRVAIARALANNPPIIL 168 (230)
T ss_dssp HHH------------------------HHHHHHHHHHHTTCCGGGTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred HHH------------------------HHHHHHHHHHHHCHHHHHHCCCH-----HHCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 999------------------------99999998876242345534880-----2389999999998756522788899
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCH
Q ss_conf 417985603588999999999875616988999951799458961001578549719987581
Q 000907 153 MDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPL 215 (1230)
Q Consensus 153 LDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iisi~qps~ei~~lfD~I~vL~~G~vv~~G~~ 215 (1230)
|||||||||+.++.+|++.|+++.+..+.|+++++ |...++ ..+|++++|.+|++++.|+.
T Consensus 169 lDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vT-Hd~~~a-~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 169 ADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVT-HDINVA-RFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEEC-SCHHHH-TTSSEEEEEETTEEEEEEEC
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEC-CCHHHH-HHCCEEEEEECCEEEEECCC
T ss_conf 46876546989999999999999984399999987-888999-86998999989999995257
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-35 Score=239.94 Aligned_cols=181 Identities=19% Similarity=0.288 Sum_probs=137.5
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 934347868998424799989923898754---31288765654556788989999999661288875302356129998
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVP---QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 77 (1230)
Q Consensus 1 l~~Lag~l~~~~~~sG~V~inG~~~~~~~~---~~~~~yV~Q~d~l~~~lTVrE~L~F~a~l~~~~~~~~~~~~~~~~e~ 77 (1230)
+++|+|.... .+|+|++||.++++... |+.++||+|++.+|+ .||+||+.|+...+.. .....+.
T Consensus 57 l~li~gl~~p---~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~~~~--------~~~~~~~ 124 (251)
T d1jj7a_ 57 AALLQNLYQP---TGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQKPT--------MEEITAA 124 (251)
T ss_dssp HHHHTTSSCC---SEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCSSCCC--------HHHHHHH
T ss_pred HHHHHCCCCC---CCCEEEECCEECCHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHCCCCH--------HHHHHHH
T ss_conf 9998614378---76899889985311013788877654045650027-6346554542101302--------7889999
Q ss_pred HHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCC
Q ss_conf 61029982256899998730121225799999981985445443368765347634341248999874497053441798
Q 000907 78 AAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 157 (1230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~l~L~~~~dT~VG~~~~~gLSGGQKkRvsIA~aLv~~p~IllLDEPT 157 (1230)
. + .....+. ..+|++..+|.+|+.+ ..||||||||++||||++.+|+|++|||||
T Consensus 125 ~-------------~--------~~~~~~~---i~~l~~g~~~~i~~~~-~~LSGGqkQRvaiARal~~~p~ililDEpT 179 (251)
T d1jj7a_ 125 A-------------V--------KSGAHSF---ISGLPQGYDTEVDEAG-SQLSGGQRQAVALARALIRKPCVLILDDAT 179 (251)
T ss_dssp H-------------H--------HHTCHHH---HHTSTTGGGCBCCSSC-SSSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred H-------------H--------HHHHHHH---HHHCCCCCHHHHHCCC-CCCCHHHCEEEEEEECCCCCCCEEEECCCC
T ss_conf 9-------------9--------9989999---9856121113675167-668954704899860445687078716757
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 560358899999999987561698899995179945896100157854971998758112999
Q 000907 158 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 158 SGLDs~sa~~I~~~L~~la~~~~~t~iisi~qps~ei~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|+||+.++.+|++.|+++.+..++|+++ ++|....+ ..+|+|++|.+|+++++|+++++.+
T Consensus 180 s~LD~~~~~~i~~~l~~l~~~~~~Tvi~-itH~l~~~-~~aDrI~vl~~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 180 SALDANSQLQVEQLLYESPERYSRSVLL-ITQHLSLV-EQADHILFLEGGAIREGGTHQQLME 240 (251)
T ss_dssp TTCCHHHHHHHHHHHHTCGGGGGCEEEE-ECSCHHHH-HTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCEEEE-EECCHHHH-HHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 6568536899999999976506989999-95979999-8599999998999999889999985
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.5e-35 Score=239.73 Aligned_cols=178 Identities=23% Similarity=0.411 Sum_probs=135.8
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCC---CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 93434786899842479998992389875---431288765654556788989999999661288875302356129998
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 77 (1230)
Q Consensus 1 l~~Lag~l~~~~~~sG~V~inG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrE~L~F~a~l~~~~~~~~~~~~~~~~e~ 77 (1230)
+++|+|.... .+|+|.+||.++++.. .|+.++||+|++.+| ..||+|||.|+.... .. ++
T Consensus 61 l~ll~gl~~p---~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~g~~~~------------~~-~~ 123 (255)
T d2hyda1 61 INLIPRFYDV---TSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILF-SDTVKENILLGRPTA------------TD-EE 123 (255)
T ss_dssp HTTTTTSSCC---SEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCC-SSBHHHHHGGGCSSC------------CH-HH
T ss_pred HHHHHHCCCC---CCCCCCCCCEECCCCCHHHHHHEEEEEECCCCCC-CCCHHHHHHCCCCCC------------CH-HH
T ss_conf 9999712786---3000153998753078888634145651015689-987999985158679------------99-99
Q ss_pred HHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCC
Q ss_conf 61029982256899998730121225799999981985445443368765347634341248999874497053441798
Q 000907 78 AAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 157 (1230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~l~L~~~~dT~VG~~~~~gLSGGQKkRvsIA~aLv~~p~IllLDEPT 157 (1230)
.. ++. +.+ ...+.+. .|+++.||.+|+.+ .+||||||||++||||++.+|+|++|||||
T Consensus 124 ~~-------------~al---~~~-~l~~~i~---~lp~gl~t~i~~~g-~~LSgGq~QRi~iARal~~~p~ililDEpt 182 (255)
T d2hyda1 124 VV-------------EAA---KMA-NAHDFIM---NLPQGYDTEVGERG-VKLSGGQKQRLSIARIFLNNPPILILDEAT 182 (255)
T ss_dssp HH-------------HHH---HHT-TCHHHHH---TSTTGGGCBCCGGG-TTSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred HH-------------HHH---HHH-CCHHHHH---HCCCCCCCHHCCCC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 99-------------999---996-9799997---36242010333888-984999999999999985599899983765
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 560358899999999987561698899995179945896100157854971998758112999
Q 000907 158 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 158 SGLDs~sa~~I~~~L~~la~~~~~t~iisi~qps~ei~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|+||+.++..|++.|+.+.+ ++|+++ ++|....+ ..+|+|++|++|++++.|+++++.+
T Consensus 183 s~LD~~t~~~i~~~l~~l~~--~~TvI~-itH~~~~~-~~~D~ii~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 183 SALDLESESIIQEALDVLSK--DRTTLI-VAHRLSTI-THADKIVVIENGHIVETGTHRELIA 241 (255)
T ss_dssp TTCCHHHHHHHHHHHHHHTT--TSEEEE-ECSSGGGT-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHC--CCEEEE-EECCHHHH-HHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 44797799999999998753--888999-96899999-8599999998999999889999986
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.9e-35 Score=237.82 Aligned_cols=178 Identities=22% Similarity=0.361 Sum_probs=135.4
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCC---CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 93434786899842479998992389875---431288765654556788989999999661288875302356129998
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 77 (1230)
Q Consensus 1 l~~Lag~l~~~~~~sG~V~inG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrE~L~F~a~l~~~~~~~~~~~~~~~~e~ 77 (1230)
+++|+|.+.. .+|+|.+||.++.+.. .|+.++||+|++.+| ..||+|||.|+.+-.. .+....++..
T Consensus 46 l~ll~gl~~p---~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~----~~~~~~~~~~-- 115 (241)
T d2pmka1 46 TKLIQRFYIP---ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL-NRSIIDNISLANPGMS----VEKVIYAAKL-- 115 (241)
T ss_dssp HHHHTTSSCC---SEEEEEETTEETTTSCHHHHHHHEEEECSSCCCT-TSBHHHHHCTTSTTCC----HHHHHHHHHH--
T ss_pred HHHHHHCCCC---CCCEEEECCEEECCCCHHHHHCEEEEEECCCCCC-CCCCCCCCCCCCCCCC----HHHHHHHHHH--
T ss_conf 9999735788---8889999999944002465535288982446557-8400035223575543----8889999999--
Q ss_pred HHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCC
Q ss_conf 61029982256899998730121225799999981985445443368765347634341248999874497053441798
Q 000907 78 AAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 157 (1230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~l~L~~~~dT~VG~~~~~gLSGGQKkRvsIA~aLv~~p~IllLDEPT 157 (1230)
....+.+ ..+++..+|.+|..+ ..|||||||||+||||++.+|+|++|||||
T Consensus 116 ------------------------~~~~~~i---~~~~~~~~t~i~~~g-~~LSGGq~QRvalARal~~~p~ililDEpt 167 (241)
T d2pmka1 116 ------------------------AGAHDFI---SELREGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEAT 167 (241)
T ss_dssp ------------------------HTCHHHH---TTSTTGGGSBCSTTT-TCCCHHHHHHHHHHHHHTTCCSEEEECCCC
T ss_pred ------------------------HHHHHHH---HHHHCCHHHHCCCCC-CCCCHHHHHHHHHHHHHHCCCCHHHHHCCC
T ss_conf ------------------------7557888---763201344327878-866988989875443444165135564776
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 560358899999999987561698899995179945896100157854971998758112999
Q 000907 158 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 158 SGLDs~sa~~I~~~L~~la~~~~~t~iisi~qps~ei~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|+||+.++..|++.|+++.+ ++|+++ ++|....+ ..+|+|++|++|+++++|+++++..
T Consensus 168 s~LD~~~~~~i~~~l~~l~~--~~Tvi~-itH~l~~~-~~~D~i~vl~~G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 168 SALDYESEHVIMRNMHKICK--GRTVII-IAHRLSTV-KNADRIIVMEKGKIVEQGKHKELLS 226 (241)
T ss_dssp SCCCHHHHHHHHHHHHHHHT--TSEEEE-ECSSGGGG-TTSSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHC--CCEEEE-EECCHHHH-HHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 55598999999999999858--998999-97889999-8499999998999999889999982
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.6e-34 Score=233.12 Aligned_cols=178 Identities=21% Similarity=0.233 Sum_probs=150.6
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCC--CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 93434786899842479998992389875--4312887656545567889899999996612888753023561299986
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV--PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKA 78 (1230)
Q Consensus 1 l~~Lag~l~~~~~~sG~V~inG~~~~~~~--~~~~~~yV~Q~d~l~~~lTVrE~L~F~a~l~~~~~~~~~~~~~~~~e~~ 78 (1230)
+++|+|.+.. .+|+|.++|.++.+.. .++.++||||++.+++++||+||+.|.+.+.... ..+
T Consensus 45 l~~l~G~~~p---~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~----------~~~-- 109 (238)
T d1vpla_ 45 LRIISTLIKP---SSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASS----------SSE-- 109 (238)
T ss_dssp HHHHTTSSCC---SEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCC----------HHH--
T ss_pred HHHHHCCCCC---CCCEEEECCEECCCCHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCCCC----------HHH--
T ss_conf 9999669887---8887999867244683988721867500154687866778889899861799----------899--
Q ss_pred HCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 10299822568999987301212257999999819854454433687653476343412489998744970534417985
Q 000907 79 AKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIST 158 (1230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~l~L~~~~dT~VG~~~~~gLSGGQKkRvsIA~aLv~~p~IllLDEPTS 158 (1230)
.++.++.+++.++|.+..+..++ .||||||||++||+|++++|+|++|||||+
T Consensus 110 ----------------------~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~~qrv~iA~al~~~p~illLDEPt~ 162 (238)
T d1vpla_ 110 ----------------------IEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTS 162 (238)
T ss_dssp ----------------------HHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred ----------------------HHHHHHHHHHHCCCHHHHHHHHH-----HCCHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf ----------------------99999999986797888850453-----379989899999999865999887337988
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHHHH
Q ss_conf 6035889999999998756169889999517994589610015785497199875811299998
Q 000907 159 GLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQFF 222 (1230)
Q Consensus 159 GLDs~sa~~I~~~L~~la~~~~~t~iisi~qps~ei~~lfD~I~vL~~G~vv~~G~~~~l~~~f 222 (1230)
|||+.++.+|++.++.+++ .|.|++ .++|...++..++|+|++|.+|++++.|+++++.+.+
T Consensus 163 gLD~~~~~~i~~~i~~~~~-~g~tii-~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 224 (238)
T d1vpla_ 163 GLDVLNAREVRKILKQASQ-EGLTIL-VSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY 224 (238)
T ss_dssp TCCHHHHHHHHHHHHHHHH-TTCEEE-EEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHH-CCCEEE-EEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 9798999999999999996-599899-9959899999969999999899999992899998652
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=8.6e-35 Score=234.87 Aligned_cols=179 Identities=26% Similarity=0.409 Sum_probs=135.4
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCC---CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 93434786899842479998992389875---431288765654556788989999999661288875302356129998
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 77 (1230)
Q Consensus 1 l~~Lag~l~~~~~~sG~V~inG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrE~L~F~a~l~~~~~~~~~~~~~~~~e~ 77 (1230)
+++|+|.... .+|+|++||.++++.. .++.++||+|++.++ ..|++||+.|+..-.. .. ++
T Consensus 58 l~ll~gl~~p---~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~n~~~~~~~~~-----------~~-~~ 121 (253)
T d3b60a1 58 ASLITRFYDI---DEGHILMDGHDLREYTLASLRNQVALVSQNVHLF-NDTVANNIAYARTEEY-----------SR-EQ 121 (253)
T ss_dssp HHHHTTTTCC---SEEEEEETTEETTTBCHHHHHHTEEEECSSCCCC-SSBHHHHHHTTTTSCC-----------CH-HH
T ss_pred HHHHHCCCCC---CCCEEEECCCCCCHHHHHHHHHEEEEEEECCCCC-CCCHHHHHHHCCCCCC-----------CH-HH
T ss_conf 9998621688---8468987880121110665420687995025447-8620243320572208-----------99-99
Q ss_pred HHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCC
Q ss_conf 61029982256899998730121225799999981985445443368765347634341248999874497053441798
Q 000907 78 AAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 157 (1230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~l~L~~~~dT~VG~~~~~gLSGGQKkRvsIA~aLv~~p~IllLDEPT 157 (1230)
..+++.. ....+.+-. |+++.||.+|+.+ .+|||||||||+||||++.+|+|++|||||
T Consensus 122 i~~a~~~-----------------~~l~~~i~~---l~~gl~t~~~~~~-~~LSGGqkQRvaiARal~~~p~ililDEpt 180 (253)
T d3b60a1 122 IEEAARM-----------------AYAMDFINK---MDNGLDTIIGENG-VLLSGGQRQRIAIARALLRDSPILILDEAT 180 (253)
T ss_dssp HHHHHHT-----------------TTCHHHHHH---STTGGGSBCCTTS-CSSCHHHHHHHHHHHHHHHCCSEEEEETTT
T ss_pred HHHHHHH-----------------HHHHHHHHH---CCCCCHHHHCCCC-CCCCHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 9999999-----------------817999973---5544101434888-984999999999999995499889951644
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 560358899999999987561698899995179945896100157854971998758112999
Q 000907 158 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 158 SGLDs~sa~~I~~~L~~la~~~~~t~iisi~qps~ei~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|+||+.++..|++.|+++.+ ++|+++ |+|....+ ..+|+|++|.+|+++++|+++++.+
T Consensus 181 s~LD~~~~~~i~~~l~~l~~--~~Tvi~-itH~l~~~-~~~D~v~vl~~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 181 SALDTESERAIQAALDELQK--NRTSLV-IAHRLSTI-EQADEIVVVEDGIIVERGTHSELLA 239 (253)
T ss_dssp SSCCHHHHHHHHHHHHHHHT--TSEEEE-ECSCGGGT-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC--CCEEEE-EECCHHHH-HHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 45898899999999987522--788999-98879999-8599999998999999889999986
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.2e-34 Score=233.90 Aligned_cols=189 Identities=25% Similarity=0.321 Sum_probs=149.0
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCCCC----CEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 9343478689984247999899238987543----128876565455678898999999966128887530235612999
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQ----RTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRRE 76 (1230)
Q Consensus 1 l~~Lag~l~~~~~~sG~V~inG~~~~~~~~~----~~~~yV~Q~d~l~~~lTVrE~L~F~a~l~~~~~~~~~~~~~~~~e 76 (1230)
+++|+|.+.. .+|+|+++|.+++....+ +-++|++|++.+++.+||+||+.+++..+.... . ...-
T Consensus 47 l~~i~Gl~~p---~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~-----~--~~~~ 116 (254)
T d1g6ha_ 47 INVITGFLKA---DEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESP-----L--NSLF 116 (254)
T ss_dssp HHHHTTSSCC---SEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCH-----H--HHHH
T ss_pred HHHHHCCCCC---CCCEEEECCEECCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCC-----H--HHHH
T ss_conf 9999779768---8737999999664056999998338725776424788742321430133303450-----4--5665
Q ss_pred HHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECC
Q ss_conf 86102998225689999873012122579999998198544544336876534763434124899987449705344179
Q 000907 77 KAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEI 156 (1230)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~l~L~~~~dT~VG~~~~~gLSGGQKkRvsIA~aLv~~p~IllLDEP 156 (1230)
.....+. .++..+.++.+++.+++.+.+|..++ .|||||||||+|||||+.+|++++||||
T Consensus 117 -~~~~~~~-------------~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~Qrv~iAraL~~~P~llilDEP 177 (254)
T d1g6ha_ 117 -YKKWIPK-------------EEEMVEKAFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEP 177 (254)
T ss_dssp -HCSSCCC-------------CHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEEST
T ss_pred -HHCCCCC-------------HHHHHHHHHHHHHHCCCCHHCCCCHH-----HCCCHHHHHHHHHHHHHHCCCCHHHCCC
T ss_conf -4213532-------------89999999999876196302059535-----6991888899999999759272324397
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 8560358899999999987561698899995179945896100157854971998758112999
Q 000907 157 STGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 157 TSGLDs~sa~~I~~~L~~la~~~~~t~iisi~qps~ei~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|+|||+.++.+|++.+++++. .| ++++.++|...++...+|+|++|.+|+++..|+++++.+
T Consensus 178 t~gLD~~~~~~i~~~i~~l~~-~g-~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 178 IAGVAPGLAHDIFNHVLELKA-KG-ITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239 (254)
T ss_dssp TTTCCHHHHHHHHHHHHHHHH-TT-CEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH-CC-CEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHH
T ss_conf 656999999999999999997-89-989999476999998699999996998999966899865
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.6e-34 Score=233.20 Aligned_cols=174 Identities=22% Similarity=0.308 Sum_probs=142.0
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCCC----CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 934347868998424799989923898754----3128876565455678898999999966128887530235612999
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVP----QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRRE 76 (1230)
Q Consensus 1 l~~Lag~l~~~~~~sG~V~inG~~~~~~~~----~~~~~yV~Q~d~l~~~lTVrE~L~F~a~l~~~~~~~~~~~~~~~~e 76 (1230)
+++|+|.+.. .+|+|+++|.++..... |.-++|++|+..+++.+||+||+.+++...... ...
T Consensus 49 ~~~i~Gl~~p---~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~---------~~~- 115 (240)
T d1ji0a_ 49 LSAIAGLVRA---QKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDK---------EGI- 115 (240)
T ss_dssp HHHHTTSSCC---SEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCS---------SHH-
T ss_pred HHHHHCCCCC---CCCEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCH---------HHH-
T ss_conf 9999678888---803898424434466088888742355676554577636999999888732788---------899-
Q ss_pred HHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEC
Q ss_conf 861029982256899998730121225799999981-9854454433687653476343412489998744970534417
Q 000907 77 KAAKIIPDADIDVFMKAVVREGQEANVITDYILKVL-DLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDE 155 (1230)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~l-~L~~~~dT~VG~~~~~gLSGGQKkRvsIA~aLv~~p~IllLDE 155 (1230)
++.++.+++.+ +|.+..|..++ .|||||||||+||+||+.+|++++|||
T Consensus 116 -------------------------~~~~~~~~~~~~~l~~~~~~~~~-----~LSGG~~Qrv~iAraL~~~P~lLllDE 165 (240)
T d1ji0a_ 116 -------------------------KRDLEWIFSLFPRLKERLKQLGG-----TLSGGEQQMLAIGRALMSRPKLLMMDE 165 (240)
T ss_dssp -------------------------HHHHHHHHHHCHHHHTTTTSBSS-----SSCHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred -------------------------HHHHHHHHHHHHCHHHHHHCCHH-----HCCHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf -------------------------99999999874176888758543-----389999999999999982998740039
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHH
Q ss_conf 9856035889999999998756169889999517994589610015785497199875811299
Q 000907 156 ISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 156 PTSGLDs~sa~~I~~~L~~la~~~~~t~iisi~qps~ei~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
||+|||+.++.+|++.++++++ .|. +++.++|...++...+|++++|.+|++++.|+++++.
T Consensus 166 Pt~gLD~~~~~~i~~~i~~l~~-~g~-til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 166 PSLGLAPILVSEVFEVIQKINQ-EGT-TILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHH-TTC-CEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH-CCC-EEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 8867999999999999999996-899-8999958899999969999999899999984899984
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.2e-34 Score=230.50 Aligned_cols=177 Identities=19% Similarity=0.201 Sum_probs=143.3
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCC----------------CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 93434786899842479998992389875----------------43128876565455678898999999966128887
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV----------------PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGS 64 (1230)
Q Consensus 1 l~~Lag~l~~~~~~sG~V~inG~~~~~~~----------------~~~~~~yV~Q~d~l~~~lTVrE~L~F~a~l~~~~~ 64 (1230)
+++|+|.... .+|+|++||.+++... .++.+|||+|++.+++.+||.||+.|+......
T Consensus 45 l~~i~Gl~~p---~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~-- 119 (258)
T d1b0ua_ 45 LRCINFLEKP---SEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG-- 119 (258)
T ss_dssp HHHHTTSSCC---SEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTC--
T ss_pred HHHHHCCCCC---CCCCEEECCEEECCCCCCCHHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCC--
T ss_conf 9999747667---89977999999336775200002351767999745448998332314110102136565787629--
Q ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 530235612999861029982256899998730121225799999981985445-4433687653476343412489998
Q 000907 65 RYDMLVELSRREKAAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCA-DTVVGDEMLRGISGGQRKRVTTGEM 143 (1230)
Q Consensus 65 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~l~L~~~~-dT~VG~~~~~gLSGGQKkRvsIA~a 143 (1230)
....+ .++.+..+++.++|.+-. +..+ ..|||||||||+||||
T Consensus 120 -------~~~~~------------------------~~~~~~~~l~~~~l~~~~~~~~p-----~~LSGG~~QRv~iAra 163 (258)
T d1b0ua_ 120 -------LSKHD------------------------ARERALKYLAKVGIDERAQGKYP-----VHLSGGQQQRVSIARA 163 (258)
T ss_dssp -------CCHHH------------------------HHHHHHHHHHHTTCCHHHHTSCG-----GGSCHHHHHHHHHHHH
T ss_pred -------CCHHH------------------------HHHHHHHHHHHCCCCHHHHCCCC-----CCCCHHHHHHHHHHHH
T ss_conf -------99899------------------------99999999998299524430682-----2056778889899999
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 74497053441798560358899999999987561698899995179945896100157854971998758112999
Q 000907 144 LVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 144 Lv~~p~IllLDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iisi~qps~ei~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|+.+|++++|||||+|||+.++.+|++.++++++ .|. +++.++|...++..++|+|++|.+|++++.|+++++..
T Consensus 164 L~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g~-til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 164 LAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGK-TMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFG 238 (258)
T ss_dssp HHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTC-CEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CCC-CEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 8439987885245556887888899876554103-688-33899489999998699999997999999849999983
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=7.7e-36 Score=241.53 Aligned_cols=179 Identities=20% Similarity=0.284 Sum_probs=135.2
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCC---CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 93434786899842479998992389875---431288765654556788989999999661288875302356129998
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFV---PQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 77 (1230)
Q Consensus 1 l~~Lag~l~~~~~~sG~V~inG~~~~~~~---~~~~~~yV~Q~d~l~~~lTVrE~L~F~a~l~~~~~~~~~~~~~~~~e~ 77 (1230)
+++|+|...+ .+|+|++||.++++.. .|+.++||+|++.+|+. ||+||+.++..-... + ...+.
T Consensus 45 l~ll~gl~~p---~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~--------~-~~~~~ 111 (242)
T d1mv5a_ 45 FSLLERFYQP---TAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYT--------D-EDLWQ 111 (242)
T ss_dssp HHHHTTSSCC---SBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTTSCSC--------H-HHHHH
T ss_pred HHHHHHHHCC---CCCEEEECCEEECCCCHHHHHHHEEEECCCCCCCCC-CHHHHEECCCCCCCC--------H-HHHHH
T ss_conf 9999996098---987798899884424678887436797566545785-345430124455542--------3-56778
Q ss_pred HHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCC
Q ss_conf 61029982256899998730121225799999981985445443368765347634341248999874497053441798
Q 000907 78 AAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEIS 157 (1230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~l~L~~~~dT~VG~~~~~gLSGGQKkRvsIA~aLv~~p~IllLDEPT 157 (1230)
.. +. ....-....+++..+|.+|+.+ .+|||||||||+||||++.+|+|++|||||
T Consensus 112 ~~------------~~-----------~~~~~~~~~~~~~~~~~i~~~g-~~LSGGqkQRv~iARal~~~p~ililDEpt 167 (242)
T d1mv5a_ 112 VL------------DL-----------AFARSFVENMPDQLNTEVGERG-VKISGGQRQRLAIARAFLRNPKILMLDEAT 167 (242)
T ss_dssp HH------------HH-----------HTCTTTTTSSTTGGGCEESTTS-BCCCHHHHHHHHHHHHHHHCCSEEEEECCS
T ss_pred HH------------HH-----------HHHHHHHCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 99------------99-----------9755542037421015236878-987999999999999985299899965886
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 560358899999999987561698899995179945896100157854971998758112999
Q 000907 158 TGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 158 SGLDs~sa~~I~~~L~~la~~~~~t~iisi~qps~ei~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|+||+.++..|++.|+.+++ ++|+++ ++|....+. .+|+|++|++|+++++|+++++.+
T Consensus 168 s~LD~~~~~~i~~~l~~l~~--~~Tvi~-itH~l~~~~-~~D~i~vl~~G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 168 ASLDSESESMVQKALDSLMK--GRTTLV-IAHRLSTIV-DADKIYFIEKGQITGSGKHNELVA 226 (242)
T ss_dssp CSSCSSSCCHHHHHHHHHHT--TSEEEE-ECCSHHHHH-HCSEEEEEETTEECCCSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC--CCEEEE-EECCHHHHH-HCCEEEEEECCEEEEECCHHHHHH
T ss_conf 55698899999887888717--998999-978799998-499999998999999999999986
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=4.5e-33 Score=223.92 Aligned_cols=168 Identities=20% Similarity=0.313 Sum_probs=125.0
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 93434786899842479998992389875431288765654556788989999999661288875302356129998610
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAK 80 (1230)
Q Consensus 1 l~~Lag~l~~~~~~sG~V~inG~~~~~~~~~~~~~yV~Q~d~l~~~lTVrE~L~F~a~l~~~~~~~~~~~~~~~~e~~~~ 80 (1230)
|++|+|.+.. .+|+|.++| .++||+|++++++ .||+||+.|+..... .+++.+.+.
T Consensus 79 l~~i~Gl~~p---~~G~I~~~g----------~i~~v~Q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~-------- 134 (281)
T d1r0wa_ 79 LMLILGELEA---SEGIIKHSG----------RVSFCSQFSWIMP-GTIKENIIFGVSYDE--YRYKSVVKA-------- 134 (281)
T ss_dssp HHHHHTSSCC---SEEEEECCS----------CEEEECSSCCCCS-EEHHHHHTTTSCCCH--HHHHHHHHH--------
T ss_pred HHHHHCCCCC---CCCEEEECC----------EEEEEECCCCCCC-CEEECCCCCCCCCCC--HHHHHHHHH--------
T ss_conf 9999579747---882899999----------9999816430267-603214203334560--579999999--------
Q ss_pred CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 29982256899998730121225799999981985445443368765347634341248999874497053441798560
Q 000907 81 IIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGL 160 (1230)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~l~L~~~~dT~VG~~~~~gLSGGQKkRvsIA~aLv~~p~IllLDEPTSGL 160 (1230)
.+.......|++..+|.+|+.+ .+|||||||||+|||||+.+|+|++||||||||
T Consensus 135 ------------------------~~~~~~i~~l~~~~~~~~~~~~-~~LSgGqkQRv~lARaL~~~p~illLDEPts~L 189 (281)
T d1r0wa_ 135 ------------------------CQLQQDITKFAEQDNTVLGEGG-VTLSGGQRARISLARAVYKDADLYLLDSPFGYL 189 (281)
T ss_dssp ------------------------TTCHHHHTTSTTGGGCEECTTC-TTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSS
T ss_pred ------------------------HHHHHHHHHCHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCC
T ss_conf ------------------------7769999846123323555542-377999999999999998696351333855448
Q ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 358899999999987561698899995179945896100157854971998758112999
Q 000907 161 DSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVEQ 220 (1230)
Q Consensus 161 Ds~sa~~I~~~L~~la~~~~~t~iisi~qps~ei~~lfD~I~vL~~G~vv~~G~~~~l~~ 220 (1230)
|+.++..|++.+..... .++|+++ ++|+. +....+|+|++|.+|+++++|+++++..
T Consensus 190 D~~~~~~i~~~~~~~~~-~~~tvi~-itH~~-~~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 190 DVFTEEQVFESCVCKLM-ANKTRIL-VTSKM-EHLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp CHHHHHHHHHHCCCCCT-TTSEEEE-ECSCH-HHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH-CCCEEEE-EECHH-HHHHHCCEEEEEECCEEEEECCHHHHHC
T ss_conf 98999999999998862-8999999-92528-9998599999998999999878999960
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=8.8e-29 Score=196.62 Aligned_cols=169 Identities=17% Similarity=0.243 Sum_probs=137.8
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 934347868998424799989923898754---31288765654556788989999999661288875302356129998
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVP---QRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREK 77 (1230)
Q Consensus 1 l~~Lag~l~~~~~~sG~V~inG~~~~~~~~---~~~~~yV~Q~d~l~~~lTVrE~L~F~a~l~~~~~~~~~~~~~~~~e~ 77 (1230)
|++|+|..+ .+|+|.++|.++..... +...+|++|+.......|+.+++.++..-+
T Consensus 42 l~~l~Gl~~----~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------------- 100 (231)
T d1l7vc_ 42 LARMAGMTS----GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDK----------------- 100 (231)
T ss_dssp HHHHHTSCC----CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCSCT-----------------
T ss_pred HHHHHCCCC----CCEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCHHHHHHHCCCHH-----------------
T ss_conf 999948879----95599999999986998999864024512135774420988764100146-----------------
Q ss_pred HHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC-------CCCE
Q ss_conf 610299822568999987301212257999999819854454433687653476343412489998744-------9705
Q 000907 78 AAKIIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVG-------PAHA 150 (1230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~l~L~~~~dT~VG~~~~~gLSGGQKkRvsIA~aLv~-------~p~I 150 (1230)
..++.++.+++.++|.+..+..++ .||||||||++||++++. +|+|
T Consensus 101 ----------------------~~~~~~~~~~~~~~l~~~~~~~~~-----~LSgG~~Qrv~iA~al~~~~p~~~p~p~l 153 (231)
T d1l7vc_ 101 ----------------------TRTELLNDVAGALALDDKLGRSTN-----QLSGGEWQRVRLAAVVLQITPQANPAGQL 153 (231)
T ss_dssp ----------------------TCHHHHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHHHHHCTTTCTTCCE
T ss_pred ----------------------HHHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf ----------------------689999999986598767676844-----56998899999999998517133899889
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHH
Q ss_conf 344179856035889999999998756169889999517994589610015785497199875811299
Q 000907 151 LFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQIVYQGPLEHVE 219 (1230)
Q Consensus 151 llLDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iisi~qps~ei~~lfD~I~vL~~G~vv~~G~~~~l~ 219 (1230)
++|||||+|||+.++..+++.++.+++ .|.+ ++.++|...++...+|++++|.+|++++.|+++++.
T Consensus 154 lllDEPt~gLD~~~~~~i~~~i~~l~~-~g~t-ii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 154 LLLDEPMNSLDVAQQSALDKILSALCQ-QGLA-IVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 220 (231)
T ss_dssp EEESSCSTTCCHHHHHHHHHHHHHHHH-TTCE-EEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHS
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHH-CCCE-EEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 997187777898999999999999986-7999-999967799999979999999799899988999981
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.93 E-value=2.6e-25 Score=174.59 Aligned_cols=154 Identities=17% Similarity=0.218 Sum_probs=120.7
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 93434786899842479998992389875431288765654556788989999999661288875302356129998610
Q 000907 1 MLALAGKLDSSLKASGKVTYNGHDMHEFVPQRTAAYISQHDIHIGEMTVRETLAFSARCQGVGSRYDMLVELSRREKAAK 80 (1230)
Q Consensus 1 l~~Lag~l~~~~~~sG~V~inG~~~~~~~~~~~~~yV~Q~d~l~~~lTVrE~L~F~a~l~~~~~~~~~~~~~~~~e~~~~ 80 (1230)
+++|+|.+.+ .+|+|.+||.++.+ .+..++|++|+..+...+|++|++.+.+.+.+... .
T Consensus 44 l~~i~gl~~p---~~G~I~~~g~~i~~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~--------~------- 103 (200)
T d1sgwa_ 44 LKTISTYLKP---LKGEIIYNGVPITK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKV--------N------- 103 (200)
T ss_dssp HHHHTTSSCC---SEEEEEETTEEGGG--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCC--------C-------
T ss_pred HHHHHCCCCC---CCCEEEECCEEHHH--HCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCC--------C-------
T ss_conf 9999662056---77889999896267--36708999501357888289999999997548863--------7-------
Q ss_pred CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 29982256899998730121225799999981985445443368765347634341248999874497053441798560
Q 000907 81 IIPDADIDVFMKAVVREGQEANVITDYILKVLDLDVCADTVVGDEMLRGISGGQRKRVTTGEMLVGPAHALFMDEISTGL 160 (1230)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~vd~il~~l~L~~~~dT~VG~~~~~gLSGGQKkRvsIA~aLv~~p~IllLDEPTSGL 160 (1230)
+..+...++.+++.+.. ..++ .||||||||++||++++.+|++++|||||+||
T Consensus 104 ---------------------~~~~~~~l~~~~~~~~~-~~~~-----~LSgG~~qrv~ia~al~~~~~llllDEPt~gL 156 (200)
T d1sgwa_ 104 ---------------------KNEIMDALESVEVLDLK-KKLG-----ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAI 156 (200)
T ss_dssp ---------------------HHHHHHHHHHTTCCCTT-SBGG-----GSCHHHHHHHHHHHHTTSCCSEEEEESTTTTS
T ss_pred ---------------------HHHHHHHHHHCCCCCCC-CCCC-----CCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf ---------------------99999999874885630-1268-----68971888899999886499899986862016
Q ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECC
Q ss_conf 3588999999999875616988999951799458961001578549
Q 000907 161 DSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSD 206 (1230)
Q Consensus 161 Ds~sa~~I~~~L~~la~~~~~t~iisi~qps~ei~~lfD~I~vL~~ 206 (1230)
|..++..+++.++++.+. +++++++.||.. ..+|.+.+|.+
T Consensus 157 D~~~~~~i~~~l~~~~~~-~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 157 DEDSKHKVLKSILEILKE-KGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp CTTTHHHHHHHHHHHHHH-HSEEEEEESSCC----TTSSEEEEGGG
T ss_pred CHHHHHHHHHHHHHHHHC-CCEEEEEEECHH----HHCCHHHHEEE
T ss_conf 999999999999999867-999999991625----44161234010
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.30 E-value=1e-12 Score=94.41 Aligned_cols=136 Identities=15% Similarity=-0.001 Sum_probs=80.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECCHHCCCCEEEEECCCCC--CCCCCCHHHHHHHHHHHCCCC-
Q ss_conf 99999599994999999895999897189999998951680012455999714886--699999999999999820898-
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDI--HSPYVTVYESLLYSAWLRLSS- 777 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~--~~~~ltv~e~l~f~~~lr~~~- 777 (1230)
.++|.||||||||||+++|+|.... ..|.+...+.+......+........... .....+..+. .+...
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 73 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSK------KLVGSY 73 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCS------SEETTE
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
T ss_conf 8999989993899999999814888--86469987713288887653112336677788754113455------443023
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999999999999199843323235999988898899999999999619977699499999999999999999999
Q 000907 778 EVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN 857 (1230)
Q Consensus 778 ~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkrl~ia~~l~~~p~illlDEptsgLD~~~~~~i~~~l~~ 857 (1230)
....+ ...+++|++++.++++++..+|+++++|||.... .......+.+.+
T Consensus 74 ~~~~~---------------------------~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~--~~~~~~~~~l~~ 124 (178)
T d1ye8a1 74 GVNVQ---------------------------YFEELAIPILERAYREAKKDRRKVIIIDEIGKME--LFSKKFRDLVRQ 124 (178)
T ss_dssp EECHH---------------------------HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--GGCHHHHHHHHH
T ss_pred HCCCC---------------------------HHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCC--HHHHHHHHHHHH
T ss_conf 03762---------------------------5665320137899999974099742302777310--045799999998
Q ss_pred HHH-CCCEEEEEECCCC
Q ss_conf 884-8988999914898
Q 000907 858 TVD-TGRTVVCTIHQPS 873 (1230)
Q Consensus 858 ~~~-~~~tvi~~~hqp~ 873 (1230)
..+ .+.+++.++|+..
T Consensus 125 ~l~~~~~~il~~~h~~~ 141 (178)
T d1ye8a1 125 IMHDPNVNVVATIPIRD 141 (178)
T ss_dssp HHTCTTSEEEEECCSSC
T ss_pred HHCCCCCEEEEEECCHH
T ss_conf 75057978999974477
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.95 E-value=1.3e-08 Score=68.25 Aligned_cols=69 Identities=20% Similarity=0.257 Sum_probs=56.4
Q ss_pred CCCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHC
Q ss_conf 88898899999999999----6199776994999999999999999999998848988999914898889998713
Q 000907 811 NGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGerkrl~ia~~l----~~~p~illlDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~hqp~~~i~~~fd~ 882 (1230)
..+|+|||+...++..+ ..+++++++|||-++|++.....+.+.|+..+ .+.-+|+|+|.|. +.+.+|+
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~-~~~QviitTHsp~--~~~~~d~ 290 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADL 290 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH--HHHHCCC
T ss_conf 10257776677777665565422674455432033579789999999999855-4887999989889--9973242
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.73 E-value=1.7e-08 Score=67.55 Aligned_cols=70 Identities=17% Similarity=0.240 Sum_probs=56.3
Q ss_pred CCCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHC
Q ss_conf 88898899999999999----6199776994999999999999999999998848988999914898889998713
Q 000907 811 NGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDA 882 (1230)
Q Consensus 811 ~~lSgGerkrl~ia~~l----~~~p~illlDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~hqp~~~i~~~fd~ 882 (1230)
..+|||||.++++|.-+ ..++++++||||+++||+.....+.+.|++++..+.-+|+++|+|. +.+..|+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~--~~~~ad~ 404 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNT--MFEKSDA 404 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHH--HHTTCSE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH--HHHHCCC
T ss_conf 3322304799999999999547999779996887778999999999999997289988999958789--9973661
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.70 E-value=2e-08 Score=67.15 Aligned_cols=27 Identities=33% Similarity=0.661 Sum_probs=22.2
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 999577299999599994999999895
Q 000907 694 GAFRPGVLTALMGVTGSGKTTLMDVLA 720 (1230)
Q Consensus 694 ~~i~~Ge~~ai~G~sGaGKSTLl~~l~ 720 (1230)
..+.++.+++|+|+|||||||++++|+
T Consensus 20 i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 20 VGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EECCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 758999989999999998899999999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.73 E-value=6.1e-05 Score=44.98 Aligned_cols=27 Identities=33% Similarity=0.576 Sum_probs=21.7
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9995772999995999949999998959
Q 000907 694 GAFRPGVLTALMGVTGSGKTTLMDVLAG 721 (1230)
Q Consensus 694 ~~i~~Ge~~ai~G~sGaGKSTLl~~l~g 721 (1230)
..+.++ ++.|+|||||||||+|++|.-
T Consensus 20 i~f~~~-lnvlvG~NgsGKS~iL~Ai~~ 46 (308)
T d1e69a_ 20 IGFSDR-VTAIVGPNGSGKSNIIDAIKW 46 (308)
T ss_dssp EECCSS-EEEEECCTTTCSTHHHHHHHH
T ss_pred EECCCC-EEEEECCCCCCHHHHHHHHHH
T ss_conf 967998-199999999848999999999
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.68 E-value=0.00013 Score=42.86 Aligned_cols=56 Identities=9% Similarity=0.179 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEECCC
Q ss_conf 9999999999961997769949999999999999999-9999884898899991489
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMR-TVRNTVDTGRTVVCTIHQP 872 (1230)
Q Consensus 817 erkrl~ia~~l~~~p~illlDEptsgLD~~~~~~i~~-~l~~~~~~~~tvi~~~hqp 872 (1230)
|-++++-......+.+++++||...|-|+.....+.. .++.+.+.+..+++++|..
T Consensus 101 el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~ 157 (224)
T d1ewqa2 101 EMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF 157 (224)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH
T ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECH
T ss_conf 678898775028977278554545686233200258888888862376137865202
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.62 E-value=1.4e-05 Score=49.06 Aligned_cols=82 Identities=13% Similarity=0.031 Sum_probs=59.7
Q ss_pred CCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCE
Q ss_conf 47634341248999874497053441798560358899999999987561698899995179945896100157854971
Q 000907 129 GISGGQRKRVTTGEMLVGPAHALFMDEISTGLDSSTTFHIVNSLGQFNHILNGTALISLLQPAPEVYNLFDDIILVSDGQ 208 (1230)
Q Consensus 129 gLSGGQKkRvsIA~aLv~~p~IllLDEPTSGLDs~sa~~I~~~L~~la~~~~~t~iisi~qps~ei~~lfD~I~vL~~G~ 208 (1230)
.+++|+++|.++++++..+|+++++|||+...+. ....++.+.+.-+..+.+++++.|+ . ......|++..+.+|+
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~~~l~~~l~~~~~~il~~~h~-~-~~~~~~~~i~~~~~~~ 156 (178)
T d1ye8a1 81 EELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFRDLVRQIMHDPNVNVVATIPI-R-DVHPLVKEIRRLPGAV 156 (178)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHHHHHHHHHTCTTSEEEEECCS-S-CCSHHHHHHHTCTTCE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH--HHHHHHHHHHHHCCCCCEEEEEECC-H-HHHHHHCEEEEEECCE
T ss_conf 6532013789999997409974230277731004--5799999998750579789999744-7-7898636599871999
Q ss_pred EEEECC
Q ss_conf 998758
Q 000907 209 IVYQGP 214 (1230)
Q Consensus 209 vv~~G~ 214 (1230)
++.-++
T Consensus 157 i~~v~~ 162 (178)
T d1ye8a1 157 LIELTP 162 (178)
T ss_dssp EEECCT
T ss_pred EEEECC
T ss_conf 999899
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.61 E-value=0.00016 Score=42.26 Aligned_cols=57 Identities=12% Similarity=0.110 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHC-CCEEEEEECCCC
Q ss_conf 9999999999961997769949999999999999999-99998848-988999914898
Q 000907 817 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMR-TVRNTVDT-GRTVVCTIHQPS 873 (1230)
Q Consensus 817 erkrl~ia~~l~~~p~illlDEptsgLD~~~~~~i~~-~l~~~~~~-~~tvi~~~hqp~ 873 (1230)
|-+|++-...-..+.+++++||+..|-++.....+.. .++.+... +..+++++|...
T Consensus 107 E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 107 EMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 99999999974546608853222358774566678987645432045442898524687
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.54 E-value=2.9e-05 Score=47.01 Aligned_cols=159 Identities=14% Similarity=0.099 Sum_probs=74.0
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC--CCCEEEEEEEECCEECCHHCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 5753428999577299999599994999999895999--89718999999895168001245599971488669999999
Q 000907 687 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRK--TRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVY 764 (1230)
Q Consensus 687 ~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~~--~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~ltv~ 764 (1230)
+-|+.+.+-++||+++.|.|++|+||||++.-++-.. ..+ ..+.|+.- .++..
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g-------------------~~v~~~s~------E~~~~ 77 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG-------------------KKVGLAML------EESVE 77 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSC-------------------CCEEEEES------SSCHH
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-------------------CCEEEEEE------CCCHH
T ss_conf 668887469789808999947999799999999972655336-------------------63457640------11113
Q ss_pred HHHH-HHHH-HCCCCCCCHHHHH-----HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 9999-9998-2089899999999-----9999999991998433232359999888988999999999996199776994
Q 000907 765 ESLL-YSAW-LRLSSEVNSKTRE-----MFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 837 (1230)
Q Consensus 765 e~l~-f~~~-lr~~~~~~~~~~~-----~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkrl~ia~~l~~~p~illlD 837 (1230)
+... +.+. ...+.......+. ...++..+.+.-........ ........+.....-...--.+|+++++|
T Consensus 78 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~vvID 154 (277)
T d1cr2a_ 78 ETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYD---SFAEAETDRLLAKLAYMRSGLGCDVIILD 154 (277)
T ss_dssp HHHHHHHHHHTTCCGGGCHHHHHHHHHTSHHHHHHHHHHSSSCEEEEC---CC-CCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEEC---CCCCHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 577699998645871010122222145677888988740352146621---43310689999986543213676259970
Q ss_pred CCC-----CCC--CHHHHHHHHHHHHHHHHC-CCEEEEEECCCC
Q ss_conf 999-----999--999999999999998848-988999914898
Q 000907 838 EPT-----SGL--DARAAAVVMRTVRNTVDT-GRTVVCTIHQPS 873 (1230)
Q Consensus 838 Ept-----sgL--D~~~~~~i~~~l~~~~~~-~~tvi~~~hqp~ 873 (1230)
--+ .+- +......++..|++++++ +.+|++++|-..
T Consensus 155 ~l~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~r 198 (277)
T d1cr2a_ 155 HISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKN 198 (277)
T ss_dssp EEEC----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 54212034654430677899999999976501655203103563
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.18 E-value=0.00016 Score=42.24 Aligned_cols=35 Identities=17% Similarity=0.432 Sum_probs=26.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEE
Q ss_conf 7729999959999499999989599989718999999
Q 000907 698 PGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITI 734 (1230)
Q Consensus 698 ~Ge~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~ 734 (1230)
+|...+++|+||.|||||+|.|.+.... -+|+|.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~--~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKL--RVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCC--C------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHH--HCCCCCC
T ss_conf 6980899788987788887730535550--1068420
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.92 E-value=0.0003 Score=40.59 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=23.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 72999995999949999998959998
Q 000907 699 GVLTALMGVTGSGKTTLMDVLAGRKT 724 (1230)
Q Consensus 699 Ge~~ai~G~sGaGKSTLl~~l~g~~~ 724 (1230)
|.++.|+||||||||||.+.|..+.+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.88 E-value=0.0087 Score=31.30 Aligned_cols=154 Identities=17% Similarity=0.159 Sum_probs=74.0
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECCHHCCCCEEEEECCCCCCCCCCCHHHH
Q ss_conf 57534289995772999995999949999998959998971899999989516800124559997148866999999999
Q 000907 687 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYES 766 (1230)
Q Consensus 687 ~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~ltv~e~ 766 (1230)
.++.+ +.||+++.|.|++|+|||||+--|+.....+ .- ..+... .....+-|+..++ +..+.
T Consensus 21 ~li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g----~~-~~~~~~---~~~~~vl~~~~E~------~~~~~ 82 (274)
T d1nlfa_ 21 YVLPN----MVAGTVGALVSPGGAGKSMLALQLAAQIAGG----PD-LLEVGE---LPTGPVIYLPAED------PPTAI 82 (274)
T ss_dssp EEETT----EETTSEEEEEESTTSSHHHHHHHHHHHHHTC----CC-TTCCCC---CCCCCEEEEESSS------CHHHH
T ss_pred HHHCC----CCCCCEEEEEECCCCCHHHHHHHHHHHHHCC----CC-CCCCCC---CCCCCEEEEECCC------HHHHH
T ss_conf 98689----5589589999289998999999999999769----97-211123---5787368985123------49999
Q ss_pred H-HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC----
Q ss_conf 9-99998208989999999999999999919984332323599998889889999999999961997769949999----
Q 000907 767 L-LYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS---- 841 (1230)
Q Consensus 767 l-~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkrl~ia~~l~~~p~illlDEpts---- 841 (1230)
. ++.+. . ....... .......+.+....+... .... +. .+.-...-..+|+++++|.-+.
T Consensus 83 ~~Rl~~~-~--~~~~~~~----~~~~~~~~~~~~~~~~~~-----~~~~--~~-~~~~~~~~~~~~~lvviD~l~~~~~~ 147 (274)
T d1nlfa_ 83 HHRLHAL-G--AHLSAEE----RQAVADGLLIQPLIGSLP-----NIMA--PE-WFDGLKRAAEGRRLMVLDTLRRFHIE 147 (274)
T ss_dssp HHHHHHH-H--TTSCHHH----HHHHHHHEEECCCTTSCC-----CTTS--HH-HHHHHHHHHTTCSEEEEECGGGGCCS
T ss_pred HHHHHHH-H--HCCCHHH----HHCCCCCCEECCCCCCCC-----HHHH--HH-HHHHHHHHCCCCCEEECCCHHHHCCC
T ss_conf 9999998-6--2368666----531233323214567420-----3578--99-99998875267658962813542266
Q ss_pred -CCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCC
Q ss_conf -99999999999999998848-988999914898
Q 000907 842 -GLDARAAAVVMRTVRNTVDT-GRTVVCTIHQPS 873 (1230)
Q Consensus 842 -gLD~~~~~~i~~~l~~~~~~-~~tvi~~~hqp~ 873 (1230)
--|......++..|+.+++. +++++++.|...
T Consensus 148 ~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~K 181 (274)
T d1nlfa_ 148 EENASGPMAQVIGRMEAIAADTGCSIVFLHHASK 181 (274)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHCCC
T ss_conf 5232256899998877776447975401310055
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.86 E-value=0.00043 Score=39.57 Aligned_cols=35 Identities=29% Similarity=0.401 Sum_probs=27.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECC
Q ss_conf 772999995999949999998959998971899999989
Q 000907 698 PGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISG 736 (1230)
Q Consensus 698 ~Ge~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g 736 (1230)
.|+++.|.|++||||||+.+.|+.+.... -+.+++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~----~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGVP----KVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSC----EEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCC----EEEECH
T ss_conf 98599998899998899999999995999----799068
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.64 E-value=0.00064 Score=38.51 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
+++|.|++|||||||++.|+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999918999899999999999
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.59 E-value=0.00079 Score=37.91 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=23.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 772999995999949999998959998
Q 000907 698 PGVLTALMGVTGSGKTTLMDVLAGRKT 724 (1230)
Q Consensus 698 ~Ge~~ai~G~sGaGKSTLl~~l~g~~~ 724 (1230)
.|.++.|+||||+||+||.+.|....+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.51 E-value=0.00027 Score=40.86 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=26.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEE
Q ss_conf 7729999959999499999989599989718999999
Q 000907 698 PGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITI 734 (1230)
Q Consensus 698 ~Ge~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~ 734 (1230)
.|....++|+||+|||||+|.|.+.... .+|+|.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~--~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGL--RTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHH--HHCCCCC
T ss_conf 3564999877873487898751517676--4035553
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.50 E-value=0.00082 Score=37.80 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.++|+|++|+|||||++.|.|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.48 E-value=0.00095 Score=37.39 Aligned_cols=27 Identities=33% Similarity=0.493 Sum_probs=23.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 577299999599994999999895999
Q 000907 697 RPGVLTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 697 ~~Ge~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
+.+.++.|+|++||||||+.+.|+.+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.43 E-value=4.5e-05 Score=45.85 Aligned_cols=32 Identities=25% Similarity=0.247 Sum_probs=27.8
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 753428999577299999599994999999895
Q 000907 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLA 720 (1230)
Q Consensus 688 iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~ 720 (1230)
..++.++.+.+| ++.|+|+|||||||+|++|.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHH
T ss_conf 870279974998-08998899998799999999
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.43 E-value=0.0011 Score=37.09 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=23.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 577299999599994999999895999
Q 000907 697 RPGVLTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 697 ~~Ge~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
+.|.++.|.|++||||||+-+.|+.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.30 E-value=0.0014 Score=36.24 Aligned_cols=28 Identities=25% Similarity=0.532 Sum_probs=23.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5772999995999949999998959998
Q 000907 697 RPGVLTALMGVTGSGKTTLMDVLAGRKT 724 (1230)
Q Consensus 697 ~~Ge~~ai~G~sGaGKSTLl~~l~g~~~ 724 (1230)
++|-.+.|.||+||||||+.+.|+.+..
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.29 E-value=0.0013 Score=36.48 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299999599994999999895999
Q 000907 700 VLTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 700 e~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
..++|.||+|+|||||.+.|+...
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.14 E-value=0.0013 Score=36.44 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999949999998959
Q 000907 701 LTALMGVTGSGKTTLMDVLAG 721 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g 721 (1230)
+++|.|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899991899839999999999
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.12 E-value=0.002 Score=35.29 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
-+||+|++|+|||||+|+|.|..
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 79998999997899999995888
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.11 E-value=0.002 Score=35.40 Aligned_cols=38 Identities=29% Similarity=0.437 Sum_probs=25.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC-CCEEEEEEEECCE
Q ss_conf 2999995999949999998959998-9718999999895
Q 000907 700 VLTALMGVTGSGKTTLMDVLAGRKT-RGYITGNITISGY 737 (1230)
Q Consensus 700 e~~ai~G~sGaGKSTLl~~l~g~~~-~~~~~G~i~~~g~ 737 (1230)
.+++|+|++|||||||++.|..+.. .|..-|.|..++.
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~ 40 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 099998099998999999999999867983799983167
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.03 E-value=0.002 Score=35.38 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.++|+|++|+|||||++.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.02 E-value=0.0021 Score=35.20 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
++||-|++|||||||.+.|+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9997898878999999999998
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.00 E-value=0.0022 Score=35.03 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.++|+|++|+|||||+|.|.|+.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.91 E-value=0.0029 Score=34.27 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 2999995999949999998959
Q 000907 700 VLTALMGVTGSGKTTLMDVLAG 721 (1230)
Q Consensus 700 e~~ai~G~sGaGKSTLl~~l~g 721 (1230)
+++.|.|++||||||+.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999999999999999
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.90 E-value=0.0013 Score=36.52 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
-+||+|++++|||||++.|+|.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.89 E-value=0.003 Score=34.22 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.++++|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.88 E-value=0.0025 Score=34.71 Aligned_cols=23 Identities=43% Similarity=0.499 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.+.|+|++||||||+.+.|+.+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.88 E-value=0.0037 Score=33.61 Aligned_cols=29 Identities=31% Similarity=0.511 Sum_probs=26.1
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 99957729999959999499999989599
Q 000907 694 GAFRPGVLTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 694 ~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
|-+++|+++.|.||+|+|||||..-++..
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 89859979999958999999999999999
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.86 E-value=0.0033 Score=33.97 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=22.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 72999995999949999998959998
Q 000907 699 GVLTALMGVTGSGKTTLMDVLAGRKT 724 (1230)
Q Consensus 699 Ge~~ai~G~sGaGKSTLl~~l~g~~~ 724 (1230)
..++.|.|++||||||+.+.|+.+..
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.85 E-value=0.0031 Score=34.13 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.++|+|.+|+|||||++.|.|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999997787
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.83 E-value=0.0032 Score=34.01 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=21.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999995999949999998959998
Q 000907 700 VLTALMGVTGSGKTTLMDVLAGRKT 724 (1230)
Q Consensus 700 e~~ai~G~sGaGKSTLl~~l~g~~~ 724 (1230)
.++.|.||+||||||+.+.|+....
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.81 E-value=0.0033 Score=33.95 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999959999499999989599
Q 000907 700 VLTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 700 e~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.++.|+||+||||||+.+.|+..
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 48999899999889999999999
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.80 E-value=0.0029 Score=34.32 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999949999998959998
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRKT 724 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~~ 724 (1230)
.+.|+|||||||+||.+.|+...+
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 699989999998999999997488
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.76 E-value=0.0026 Score=34.65 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.++|+|++|+|||||++.|.+..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.76 E-value=0.0039 Score=33.51 Aligned_cols=23 Identities=39% Similarity=0.689 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.++++|.+++|||||+|.|.|..
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999799998999999995898
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.75 E-value=0.0037 Score=33.66 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999995999949999998959998
Q 000907 700 VLTALMGVTGSGKTTLMDVLAGRKT 724 (1230)
Q Consensus 700 e~~ai~G~sGaGKSTLl~~l~g~~~ 724 (1230)
..+.|+||||+||+||++.|..+.+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7199999899999999999997097
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.75 E-value=0.0039 Score=33.46 Aligned_cols=25 Identities=36% Similarity=0.737 Sum_probs=22.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7299999599994999999895999
Q 000907 699 GVLTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 699 Ge~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
|=.++++|++++|||||++.|.|..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899998999998999999996888
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.72 E-value=0.0028 Score=34.41 Aligned_cols=24 Identities=33% Similarity=0.317 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299999599994999999895999
Q 000907 700 VLTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 700 e~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
..+.|.||+|+|||||++.++...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 699998899971999999999999
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.70 E-value=0.0043 Score=33.21 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.++++|.+|+|||||++.|.|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.69 E-value=0.0035 Score=33.79 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 72999995999949999998959
Q 000907 699 GVLTALMGVTGSGKTTLMDVLAG 721 (1230)
Q Consensus 699 Ge~~ai~G~sGaGKSTLl~~l~g 721 (1230)
.-.++|.||+|||||||++.|..
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 32897438999989999999999
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.66 E-value=0.0043 Score=33.25 Aligned_cols=26 Identities=38% Similarity=0.495 Sum_probs=22.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 57729999959999499999989599
Q 000907 697 RPGVLTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 697 ~~Ge~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
++|-.+.|+||+||||||..+.|+.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99638999899999889999999998
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.65 E-value=0.0025 Score=34.74 Aligned_cols=33 Identities=27% Similarity=0.312 Sum_probs=26.3
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 899957729999959999499999989599989
Q 000907 693 SGAFRPGVLTALMGVTGSGKTTLMDVLAGRKTR 725 (1230)
Q Consensus 693 s~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~~~~ 725 (1230)
...++.|.-+.|.|+.||||||++++|.+..++
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~ 192 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK 192 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 999983788899940356625789998653014
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.62 E-value=0.0041 Score=33.36 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
++||-|++||||||+-+.|+..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978799999999999
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.61 E-value=0.0038 Score=33.57 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599994999999895999
Q 000907 702 TALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 702 ~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
+.|+|||||||+||.+.|....
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.59 E-value=0.0044 Score=33.18 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999959999499999989599
Q 000907 700 VLTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 700 e~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.+++|.|++||||||+.+.|+.+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 88999899998989999999999
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.58 E-value=0.0024 Score=34.79 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=22.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7729999959999499999989599
Q 000907 698 PGVLTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 698 ~Ge~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.|-++.+.|++||||||+-+.|+.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9969998899999999999999999
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.58 E-value=0.0024 Score=34.78 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599994999999895999
Q 000907 702 TALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 702 ~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
+||+|++++|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.57 E-value=0.0046 Score=33.06 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=21.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7299999599994999999895999
Q 000907 699 GVLTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 699 Ge~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
-.++.|+||+||||||+.+.|+...
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7289998999999899999999985
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.42 E-value=0.0047 Score=32.97 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=22.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 577299999599994999999895999
Q 000907 697 RPGVLTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 697 ~~Ge~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
+.+.++.|+||+||||||+.+.|+...
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 678289998999998799999999986
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.41 E-value=0.0054 Score=32.62 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.++|.||+||||||.-+.|+...
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99978999879899999999996
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.38 E-value=0.0057 Score=32.45 Aligned_cols=37 Identities=24% Similarity=0.432 Sum_probs=25.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEEEEEC
Q ss_conf 7299999599994999999895999-897189999998
Q 000907 699 GVLTALMGVTGSGKTTLMDVLAGRK-TRGYITGNITIS 735 (1230)
Q Consensus 699 Ge~~ai~G~sGaGKSTLl~~l~g~~-~~~~~~G~i~~~ 735 (1230)
.-.++|.|++|||||||++.|.... ..+..-|-+.+|
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavD 88 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 88 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 15986117998889999999999876368751344346
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.36 E-value=0.0047 Score=32.99 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.+.|+||+||||||+.+.|+...
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.30 E-value=0.0063 Score=32.19 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.+.|+||+||||||..+.|+..
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999799999989999999998
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.27 E-value=0.0058 Score=32.40 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.+.|.||+||||||+-+.|+.+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.27 E-value=0.0046 Score=33.06 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.++++|++|+|||||++.|.+..
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996788
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.22 E-value=0.0062 Score=32.22 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599994999999895999
Q 000907 702 TALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 702 ~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
+.|+|++||||||+.+.|+...
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.21 E-value=0.006 Score=32.29 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599994999999895999
Q 000907 702 TALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 702 ~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
+||+|+..||||||++.|.+..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCHHHHHHHHHHHC
T ss_conf 9999077870999999999743
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.10 E-value=0.0065 Score=32.09 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=20.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7729999959999499999989599
Q 000907 698 PGVLTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 698 ~Ge~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
|+.-+.++||+|+|||.|.++||..
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 9866999899998888999998621
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.09 E-value=0.0055 Score=32.56 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999995999949999998959998
Q 000907 700 VLTALMGVTGSGKTTLMDVLAGRKT 724 (1230)
Q Consensus 700 e~~ai~G~sGaGKSTLl~~l~g~~~ 724 (1230)
..+.+.||+|+|||||.++|++...
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999889799889999999999865
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.05 E-value=0.0039 Score=33.48 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.++|+|++++|||||+|.|.+..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998899998999999985898
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.03 E-value=0.0074 Score=31.73 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.+.|+||+||||||+.+.|+..
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999989999999998
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.00 E-value=0.066 Score=25.69 Aligned_cols=150 Identities=14% Similarity=0.064 Sum_probs=69.4
Q ss_pred EEECE-EEEEECCEEEEEECCCCCCHHHHHHHHHCC-CCCCEEEEEEEECCEECCHHCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 75342-899957729999959999499999989599-9897189999998951680012455999714886699999999
Q 000907 688 LLNGV-SGAFRPGVLTALMGVTGSGKTTLMDVLAGR-KTRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYE 765 (1230)
Q Consensus 688 iL~~v-s~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~-~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~ltv~e 765 (1230)
-|+++ .|-+++|+++.|.|++|+|||+|..-++.. ...+ ...+.|+.-+ .+..+
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~------------------~~~~~~~s~e------~~~~~ 69 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF------------------DEPGVFVTFE------ETPQD 69 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH------------------CCCEEEEESS------SCHHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC------------------CCCCCCCCCC------CCHHH
T ss_conf 79885568996983999994799999999999999999856------------------8874201266------79999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHH--HCCCEEEEECCCCC
Q ss_conf 999999820898999999999999999991998433232359999888988999-999999996--19977699499999
Q 000907 766 SLLYSAWLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRK-RLTIAVELV--ANPSIIFMDEPTSG 842 (1230)
Q Consensus 766 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerk-rl~ia~~l~--~~p~illlDEptsg 842 (1230)
......... ... +...+.............. ........... .+.-....+ .+|+++++|--+.-
T Consensus 70 ~~~~~~~~~----~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l 137 (242)
T d1tf7a1 70 IIKNARSFG----WDL-------AKLVDEGKLFILDASPDPE-GQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSV 137 (242)
T ss_dssp HHHHHGGGT----CCH-------HHHHHTTSEEEEECCCCSS-CCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTT
T ss_pred HHHHHHHCC----CCH-------HHHHHHCCHHHHHHCCCHH-HHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999849----984-------8988714302444210335-4444302458999999999988631222002078899
Q ss_pred C----CHHHHH-HHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9----999999-999999998848988999914898
Q 000907 843 L----DARAAA-VVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 843 L----D~~~~~-~i~~~l~~~~~~~~tvi~~~hqp~ 873 (1230)
. +..... .+...++..++.+.|++++.|...
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (242)
T d1tf7a1 138 FQQYDASSVVRRELFRLVARLKQIGATTVMTTERIE 173 (242)
T ss_dssp STTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSS
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 876057267899999999999863971688421025
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.97 E-value=0.0069 Score=31.93 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.+.++|++||||||+-+.||.+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88998899998899999999994
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.97 E-value=0.009 Score=31.20 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999959999499999989599
Q 000907 700 VLTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 700 e~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.++.++|.+|+||||+.+.|+..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999899999999999999999
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.96 E-value=0.0091 Score=31.17 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=20.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 772999995999949999998959
Q 000907 698 PGVLTALMGVTGSGKTTLMDVLAG 721 (1230)
Q Consensus 698 ~Ge~~ai~G~sGaGKSTLl~~l~g 721 (1230)
.-+++.++|++||||||+.+-++.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 998999989999989999999997
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.93 E-value=0.0086 Score=31.31 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
++||-|++||||||+.+.|...
T Consensus 82 iIGIaG~sgSGKSTla~~L~~l 103 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHH
T ss_conf 9999689999876899999999
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.92 E-value=0.011 Score=30.68 Aligned_cols=28 Identities=36% Similarity=0.538 Sum_probs=25.3
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9995772999995999949999998959
Q 000907 694 GAFRPGVLTALMGVTGSGKTTLMDVLAG 721 (1230)
Q Consensus 694 ~~i~~Ge~~ai~G~sGaGKSTLl~~l~g 721 (1230)
|-+++|+++.|.|++|+|||||..-++-
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9986996999983899988999999999
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.78 E-value=0.0081 Score=31.48 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.+.++|++|+|||||++.+.+..
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996598
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.78 E-value=0.0081 Score=31.48 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.++++|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.77 E-value=0.011 Score=30.67 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
+++|.||+||||+|+-+.|+.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89977999889899999999996
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.75 E-value=0.0074 Score=31.71 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.++|+|++|+|||||++.|.+..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.75 E-value=0.0087 Score=31.28 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.++++|.+|+|||||++.+.+..
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996798
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.74 E-value=0.031 Score=27.81 Aligned_cols=35 Identities=29% Similarity=0.282 Sum_probs=28.0
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 575342899957729999959999499999989599
Q 000907 687 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 687 ~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
..+++....+ .|.-+.+.|+||+|||||...|..+
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred CEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 3178999999-9999999818999989999999985
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.74 E-value=0.011 Score=30.65 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.+.|+||+||||||+.+.|+...
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.65 E-value=0.012 Score=30.40 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.++++|++|+|||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.63 E-value=0.011 Score=30.68 Aligned_cols=22 Identities=41% Similarity=0.561 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599994999999895999
Q 000907 702 TALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 702 ~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
+.++|++||||||+-+.|+.+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.54 E-value=0.012 Score=30.41 Aligned_cols=23 Identities=35% Similarity=0.385 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.+.|+||+||||||+.+.|+...
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.53 E-value=0.018 Score=29.29 Aligned_cols=28 Identities=39% Similarity=0.602 Sum_probs=24.3
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 8999577299999599994999999895
Q 000907 693 SGAFRPGVLTALMGVTGSGKTTLMDVLA 720 (1230)
Q Consensus 693 s~~i~~Ge~~ai~G~sGaGKSTLl~~l~ 720 (1230)
.|-+++|+++.|.|++|+|||||.--++
T Consensus 30 ~GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 30 GGGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 6995588799998589898899999999
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.49 E-value=0.015 Score=29.70 Aligned_cols=42 Identities=26% Similarity=0.303 Sum_probs=28.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEE
Q ss_conf 577299999599994999999895999897189999998951
Q 000907 697 RPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 697 ~~Ge~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
+.|-++-+.|.|||||||+.+.|+.+.......-.+.++|..
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~ 63 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 63 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHH
T ss_conf 998699998999999899999999887774275089975367
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.48 E-value=0.011 Score=30.75 Aligned_cols=26 Identities=35% Similarity=0.647 Sum_probs=21.5
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 957729999959999499999989599
Q 000907 696 FRPGVLTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 696 i~~Ge~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
+++. .+||+|...||||||++.|.+.
T Consensus 3 ~r~p-~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 3 IRSP-IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp ECCC-EEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCC-EEEEEECCCCCHHHHHHHHHHH
T ss_conf 8998-7999969985499999999823
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.48 E-value=0.018 Score=29.25 Aligned_cols=30 Identities=33% Similarity=0.492 Sum_probs=26.2
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 899957729999959999499999989599
Q 000907 693 SGAFRPGVLTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 693 s~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
+|-+++|+++.|.|++|+|||++..-++-.
T Consensus 28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~ 57 (258)
T d2i1qa2 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCVN 57 (258)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 798628859999917999989999999999
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.43 E-value=0.012 Score=30.44 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.+.++||+||||||..+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999879999989999999998
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.42 E-value=0.013 Score=30.13 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.+.|+||+||||||+.+.|+.+.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 69998899998799999999997
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.38 E-value=0.019 Score=29.08 Aligned_cols=137 Identities=18% Similarity=0.139 Sum_probs=69.0
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEEEEECCEECCHHCCCCEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 8999577299999599994999999895999-897189999998951680012455999714886699999999999999
Q 000907 693 SGAFRPGVLTALMGVTGSGKTTLMDVLAGRK-TRGYITGNITISGYPKNQETFTRISGYCEQNDIHSPYVTVYESLLYSA 771 (1230)
Q Consensus 693 s~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~~-~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~ 771 (1230)
.|-+++|+++.|.|++|+|||+++.-++... ..+ ..+.|+.-+ .+..+......
T Consensus 20 ~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~-------------------~~~~~is~e------~~~~~~~~~~~ 74 (242)
T d1tf7a2 20 GGGFFKDSIILATGATGTGKTLLVSRFVENACANK-------------------ERAILFAYE------ESRAQLLRNAY 74 (242)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTT-------------------CCEEEEESS------SCHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC-------------------CCCCEEECC------CCHHHHHHHHH
T ss_conf 68986984999991899999999999999998723-------------------244112126------79999999999
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HHCCCEEEEECCCC---CCCHHH
Q ss_conf 82089899999999999999999199843323235999988898899999999999-61997769949999---999999
Q 000907 772 WLRLSSEVNSKTREMFVEEVMELVELNPLRQALVGLPGVNGLSTEQRKRLTIAVEL-VANPSIIFMDEPTS---GLDARA 847 (1230)
Q Consensus 772 ~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkrl~ia~~l-~~~p~illlDEpts---gLD~~~ 847 (1230)
... .... +. ...+.....+... ......+. .-.+...+ -.+|++++.|.-+. +.+...
T Consensus 75 ~~~----~~~~-------~~-~~~~~~~~~~~~~-----~~~~~~~~-~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~ 136 (242)
T d1tf7a2 75 SWG----MDFE-------EM-ERQNLLKIVCAYP-----ESAGLEDH-LQIIKSEINDFKPARIAIDSLSALARGVSNNA 136 (242)
T ss_dssp TTS----CCHH-------HH-HHTTSEEECCCCG-----GGSCHHHH-HHHHHHHHHTTCCSEEEEECHHHHTSSSCHHH
T ss_pred HCC----CCHH-------HH-HHCCCEEEEEEEC-----CHHHHHHH-HHHHHHHHHHCCCCEEEEECCHHHHCCCCHHH
T ss_conf 829----9869-------98-5458617997300-----01017999-99999999840885332204314304899999
Q ss_pred HHHHHHHHHHHH-HCCCEEEEEECCC
Q ss_conf 999999999988-4898899991489
Q 000907 848 AAVVMRTVRNTV-DTGRTVVCTIHQP 872 (1230)
Q Consensus 848 ~~~i~~~l~~~~-~~~~tvi~~~hqp 872 (1230)
....+..+.+.+ +.+.+++++.|..
T Consensus 137 ~~~~~~~l~~~~~~~~~~~i~~~~~~ 162 (242)
T d1tf7a2 137 FRQFVIGVTGYAKQEEITGLFTNTSD 162 (242)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 99999999999998698399998567
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.35 E-value=0.015 Score=29.76 Aligned_cols=26 Identities=38% Similarity=0.483 Sum_probs=22.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 57729999959999499999989599
Q 000907 697 RPGVLTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 697 ~~Ge~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
+.|-+++|-|+.||||||+.+.|+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~ 26 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEA 26 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98059999899888999999999999
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.35 E-value=0.016 Score=29.68 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
++.|.|++||||||+.+.|+.+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998989989899999999999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.34 E-value=0.014 Score=30.00 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999949999998959
Q 000907 701 LTALMGVTGSGKTTLMDVLAG 721 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g 721 (1230)
++||.|++||||||+.+.|..
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.31 E-value=0.015 Score=29.72 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.++++|.+|+|||||++.|.+..
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989899999996688
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.27 E-value=0.011 Score=30.58 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299999599994999999895999
Q 000907 700 VLTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 700 e~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
-+++|-|+.||||||+++.|+...
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199988999988899999999870
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.26 E-value=0.018 Score=29.30 Aligned_cols=45 Identities=22% Similarity=0.402 Sum_probs=33.3
Q ss_pred HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9999996199776994999999999999999999998848988999914898
Q 000907 822 TIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 822 ~ia~~l~~~p~illlDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~hqp~ 873 (1230)
.+..+|=.+|.++++.|.. |..++...+ +.+..|+.|+.|.|-.+
T Consensus 219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~ 263 (401)
T d1p9ra_ 219 GLRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT 263 (401)
T ss_dssp HHHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS
T ss_pred HHHHHHHHCCCEEEECCCC---CHHHHHHHH----HHHHCCCEEEEEECCCC
T ss_conf 9999984138889845768---759999999----99724985899833676
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.26 E-value=0.018 Score=29.31 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.+.+.||+|+||||+.++++...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998799998889999999998
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.23 E-value=0.017 Score=29.47 Aligned_cols=25 Identities=16% Similarity=0.434 Sum_probs=21.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7729999959999499999989599
Q 000907 698 PGVLTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 698 ~Ge~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.+..+.|.||+|+|||||++.++..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 5987999869998299999999997
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.17 E-value=0.019 Score=29.07 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=25.1
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9995772999995999949999998959
Q 000907 694 GAFRPGVLTALMGVTGSGKTTLMDVLAG 721 (1230)
Q Consensus 694 ~~i~~Ge~~ai~G~sGaGKSTLl~~l~g 721 (1230)
|-+++|+++.|.|++|+|||++..-++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9976897999988998878899999999
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.16 E-value=0.052 Score=26.34 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999949999998959998
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRKT 724 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~~ 724 (1230)
.++++|++|+|||||++.+.+...
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~~ 30 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNKF 30 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999198999999961999
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.15 E-value=0.0064 Score=32.14 Aligned_cols=22 Identities=18% Similarity=0.442 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
++||.|+|||||||+.+.|...
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i 27 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQI 27 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978099999999999
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.13 E-value=0.019 Score=29.08 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=20.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7729999959999499999989599
Q 000907 698 PGVLTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 698 ~Ge~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.+.+++++||+|+||||.+-=||.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9779999899999889999999999
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.08 E-value=0.017 Score=29.41 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.+.++||+||||||+.+.|+.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899999989999999999
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=93.90 E-value=0.023 Score=28.54 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=20.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7729999959999499999989599
Q 000907 698 PGVLTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 698 ~Ge~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
+..-+.+.||+|+|||++.++|+..
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 8886786689988822899999998
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.82 E-value=0.014 Score=29.87 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=22.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 72999995999949999998959998
Q 000907 699 GVLTALMGVTGSGKTTLMDVLAGRKT 724 (1230)
Q Consensus 699 Ge~~ai~G~sGaGKSTLl~~l~g~~~ 724 (1230)
+..++|-|+.||||||+++.|+....
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98899987888779999999999973
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.81 E-value=0.021 Score=28.88 Aligned_cols=22 Identities=36% Similarity=0.338 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.+.+.||+|+||||+.++++..
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 6999789997487999999999
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=93.74 E-value=0.039 Score=27.13 Aligned_cols=34 Identities=26% Similarity=0.264 Sum_probs=26.1
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 75342899957729999959999499999989599
Q 000907 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 688 iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.+++.. ..-.|.-+.+.|+||+||||+.-.|..+
T Consensus 4 ~lH~~~-v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 4 SMHGVL-VDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEEE-EEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEEE-EEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 289999-9999999999808999989999999985
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.67 E-value=0.025 Score=28.33 Aligned_cols=23 Identities=39% Similarity=0.390 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999959999499999989599
Q 000907 700 VLTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 700 e~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.-+.+.||+|+|||++.++|+..
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 07998896999889999998620
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.67 E-value=0.022 Score=28.68 Aligned_cols=23 Identities=39% Similarity=0.510 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.+.+.||+|+||||+.++|+...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 48987999973889999998503
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.60 E-value=0.026 Score=28.27 Aligned_cols=21 Identities=38% Similarity=0.664 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999949999998959
Q 000907 701 LTALMGVTGSGKTTLMDVLAG 721 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g 721 (1230)
++||.|+.||||||+.+.+..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.56 E-value=0.024 Score=28.48 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
-+||+|.+.+|||||+++|+|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred CEEEECCCCCCHHHHHHHHHCC
T ss_conf 1768899999899999999788
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.51 E-value=0.03 Score=27.89 Aligned_cols=23 Identities=26% Similarity=0.611 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.++++|.-.||||||+++|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.50 E-value=0.028 Score=28.05 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999949999998959
Q 000907 701 LTALMGVTGSGKTTLMDVLAG 721 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g 721 (1230)
++||-|++|||||||.+.|..
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 998379987889999999999
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.50 E-value=0.029 Score=27.99 Aligned_cols=25 Identities=28% Similarity=0.435 Sum_probs=22.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7729999959999499999989599
Q 000907 698 PGVLTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 698 ~Ge~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.|..++|-|+.||||||+.+.|+..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~ 25 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVET 25 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9878999899888799999999999
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.49 E-value=0.034 Score=27.53 Aligned_cols=24 Identities=46% Similarity=0.401 Sum_probs=20.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 729999959999499999989599
Q 000907 699 GVLTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 699 Ge~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
..++.++||+|+||||.+-=||.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 868999899999889999999999
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.48 E-value=0.0038 Score=33.57 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.++++|++++|||||++.|.|..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.45 E-value=0.025 Score=28.40 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.++++|++|+|||||++.+.+..
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996487
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=93.29 E-value=0.021 Score=28.79 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.++++|++|+|||||++.+.+..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~~ 26 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASGQ 26 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989899999997197
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.29 E-value=0.031 Score=27.78 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.++++|.-.||||||+|+|.|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.28 E-value=0.026 Score=28.21 Aligned_cols=33 Identities=39% Similarity=0.727 Sum_probs=26.1
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 753428999577299999599994999999895999
Q 000907 688 LLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 688 iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
+|++++. |=-+++|+||.++|||||||.|.|..
T Consensus 24 ~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 24 ILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHCCCC---CEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 9970799---87999988999997999999980998
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.27 E-value=0.036 Score=27.33 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=20.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 729999959999499999989599
Q 000907 699 GVLTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 699 Ge~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
-.+++++||+|+||||.+-=||.+
T Consensus 11 p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 11 PFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 989999899999889999999999
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.26 E-value=0.032 Score=27.66 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=23.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 772999995999949999998959998
Q 000907 698 PGVLTALMGVTGSGKTTLMDVLAGRKT 724 (1230)
Q Consensus 698 ~Ge~~ai~G~sGaGKSTLl~~l~g~~~ 724 (1230)
.|.++++-|+.||||||+.+.|+.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.16 E-value=0.034 Score=27.50 Aligned_cols=21 Identities=43% Similarity=0.664 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999949999998959
Q 000907 701 LTALMGVTGSGKTTLMDVLAG 721 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g 721 (1230)
++||.|..||||||..+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.16 E-value=0.026 Score=28.28 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.++++|.+|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=93.10 E-value=0.039 Score=27.13 Aligned_cols=25 Identities=32% Similarity=0.296 Sum_probs=21.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7729999959999499999989599
Q 000907 698 PGVLTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 698 ~Ge~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
|...+.++||+|+|||.|.+.||..
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 7658999778750069999999863
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.00 E-value=0.054 Score=26.23 Aligned_cols=35 Identities=29% Similarity=0.207 Sum_probs=27.3
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 575342899957729999959999499999989599
Q 000907 687 VLLNGVSGAFRPGVLTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 687 ~iL~~vs~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
+.+++ ++..-.|.-+.|.|+||+||||+.-.|..+
T Consensus 4 t~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 4 TSLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 04889-999999999999808999999999999984
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.99 E-value=0.022 Score=28.78 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=22.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 577299999599994999999895999
Q 000907 697 RPGVLTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 697 ~~Ge~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
++..-+.+.||+|+|||+|.+++++..
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 988757887899876304778878771
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=92.96 E-value=0.026 Score=28.21 Aligned_cols=21 Identities=48% Similarity=0.613 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959999499999989599
Q 000907 702 TALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 702 ~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
+.+.||+|.||||+.+++++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 898897998788899999998
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.95 E-value=0.03 Score=27.90 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.++++|++|+|||||++.+.+..
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999969899999997098
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.93 E-value=0.035 Score=27.45 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=20.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 729999959999499999989599
Q 000907 699 GVLTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 699 Ge~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
-.+++++||+|+||||.+-=||.+
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~ 35 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYF 35 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 989999899999989999999999
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.92 E-value=0.041 Score=26.99 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=21.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7299999599994999999895999
Q 000907 699 GVLTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 699 Ge~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
...+.|.||+|+||||+++.++...
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8816888989998999999999997
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=92.87 E-value=0.051 Score=26.40 Aligned_cols=28 Identities=32% Similarity=0.445 Sum_probs=25.3
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9995772999995999949999998959
Q 000907 694 GAFRPGVLTALMGVTGSGKTTLMDVLAG 721 (1230)
Q Consensus 694 ~~i~~Ge~~ai~G~sGaGKSTLl~~l~g 721 (1230)
|-+++|.++.+.||+|+|||||+--++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9966735899805777478999999999
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=92.84 E-value=0.037 Score=27.32 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
-+.+.||+|+|||++.++|++..
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 48876689888359999999873
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.82 E-value=0.044 Score=26.79 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=19.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999959999499999989599
Q 000907 700 VLTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 700 e~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.+++++||+|+||||.+-=||.+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~ 32 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQ 32 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999899999989999999999
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.74 E-value=0.038 Score=27.24 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959999499999989599
Q 000907 702 TALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 702 ~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
+.+-||+|+||||+.++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999849999999999
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.70 E-value=0.04 Score=27.05 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
-+.+.||+|+|||++.++++...
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCHHHHHHHHHHH
T ss_conf 46876699888308999999874
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.68 E-value=0.031 Score=27.80 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.++++|.+|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.67 E-value=0.04 Score=27.08 Aligned_cols=44 Identities=30% Similarity=0.389 Sum_probs=28.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEECCHHCCCCEEEEECCC
Q ss_conf 999995999949999998959998971899999989516800124559997148
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYPKNQETFTRISGYCEQN 754 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~ 754 (1230)
-+.++||+|+|||-|.+.||+..... -+..++. .+. ..|||..+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VP----Fv~~daT-----~fT-eaGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAP----FIKVEAT-----KFT-EVGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC----EEEEEGG-----GGC-----CCCC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCC----EEEEECC-----EEE-ECCEEECC
T ss_conf 47998999988999999999873898----8986255-----114-11111044
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.60 E-value=0.035 Score=27.48 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.++++|++|+|||||++.+.+.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999829
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=92.59 E-value=0.04 Score=27.09 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=25.0
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9995772999995999949999998959
Q 000907 694 GAFRPGVLTALMGVTGSGKTTLMDVLAG 721 (1230)
Q Consensus 694 ~~i~~Ge~~ai~G~sGaGKSTLl~~l~g 721 (1230)
.-+..|+..+|+|++|+|||+|+..++.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 5645787556867999887899999999
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.56 E-value=0.052 Score=26.36 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.++++|.+|+|||||++-+.+.
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.54 E-value=0.046 Score=26.68 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999949999998959
Q 000907 701 LTALMGVTGSGKTTLMDVLAG 721 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g 721 (1230)
.++++|.+|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.49 E-value=0.055 Score=26.21 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.++++|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.48 E-value=0.051 Score=26.38 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.++++|.+|+|||||++-+.+.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.36 E-value=0.04 Score=27.10 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.++++|.+|+|||||++.+.+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999719
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=92.32 E-value=0.048 Score=26.54 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
-+||+|.-.+|||||++.|.|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=92.29 E-value=0.033 Score=27.60 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999959999499999989599
Q 000907 700 VLTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 700 e~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
-.+||+|-+.+|||||+++|++-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 37999789999899999999778
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.24 E-value=0.049 Score=26.52 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.++++|.+|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.22 E-value=0.053 Score=26.28 Aligned_cols=23 Identities=48% Similarity=0.736 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
+++|-|.-||||||+++.|..+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998998789999999999999
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.10 E-value=0.043 Score=26.84 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.+.++|.+|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.05 E-value=0.076 Score=25.30 Aligned_cols=23 Identities=39% Similarity=0.677 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.+.++|.+|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989929999999997286
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=91.95 E-value=0.068 Score=25.60 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=23.9
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 95772999995999949999998959
Q 000907 696 FRPGVLTALMGVTGSGKTTLMDVLAG 721 (1230)
Q Consensus 696 i~~Ge~~ai~G~sGaGKSTLl~~l~g 721 (1230)
.+||.++++-|+=||||||+.+.++.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 79982999966877658899999876
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.95 E-value=0.055 Score=26.17 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=25.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC-----CC--E-EEEEEEECCEE
Q ss_conf 999995999949999998959998-----97--1-89999998951
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRKT-----RG--Y-ITGNITISGYP 738 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~~-----~~--~-~~G~i~~~g~~ 738 (1230)
.++++|.+|+|||||++.+.+... +. . ..-.+.++|.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~ 51 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQE 51 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCEEEECCCEE
T ss_conf 8999998992989999999719888544754211310388317679
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.94 E-value=0.055 Score=26.17 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.+.++|.+|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.84 E-value=0.058 Score=26.05 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959999499999989599
Q 000907 702 TALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 702 ~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
++++|+.|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999619
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=91.80 E-value=0.036 Score=27.37 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.++++|++|+|||||++.+.+.
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999889999887338
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.79 E-value=0.057 Score=26.07 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959999499999989599
Q 000907 702 TALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 702 ~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
+.+-||+|+||||+.++++..
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHH
T ss_conf 999889998705469999999
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.66 E-value=0.064 Score=25.79 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.++++|.+|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999999997999999999739
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.62 E-value=0.054 Score=26.24 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.++++|.+|+|||||++.+.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989939999999997199
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.52 E-value=0.055 Score=26.19 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.++++|.+|+|||||++.+.+.
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990889999999719
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.34 E-value=0.078 Score=25.22 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.++++|.+|+|||||++-+.+.
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999992989999999739
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.20 E-value=0.062 Score=25.86 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.++++|.+|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.13 E-value=0.072 Score=25.44 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959999499999989599
Q 000907 702 TALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 702 ~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
+.+.||+|+||||+.++++..
T Consensus 38 lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999889987755899999998
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.11 E-value=0.064 Score=25.76 Aligned_cols=42 Identities=19% Similarity=0.236 Sum_probs=28.1
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 99776994999999999999999999998848988999914898
Q 000907 830 NPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 830 ~p~illlDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~hqp~ 873 (1230)
+.+++++||.-. |.......+.+.+..- .....+|++++.+.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~-~~~~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKY-SKNIRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHS-TTTEEEEEEESCSC
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCC-CCCCCCEEEECCCC
T ss_conf 724999424333-4543111221002213-56643000102111
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.06 E-value=0.086 Score=24.94 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.++++|.+|+|||||++-+...
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998994999999999739
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=91.04 E-value=0.08 Score=25.14 Aligned_cols=21 Identities=52% Similarity=0.643 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999949999998959
Q 000907 701 LTALMGVTGSGKTTLMDVLAG 721 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g 721 (1230)
-++|+|+.|+|||||...|..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999994889809999999999
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.04 E-value=0.085 Score=24.98 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.++++|.+|+|||||++.+.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~~~ 29 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTNA 29 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999979999999997498
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=90.99 E-value=0.072 Score=25.44 Aligned_cols=38 Identities=21% Similarity=0.061 Sum_probs=27.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCEE
Q ss_conf 577299999599994999999895999897189999998951
Q 000907 697 RPGVLTALMGVTGSGKTTLMDVLAGRKTRGYITGNITISGYP 738 (1230)
Q Consensus 697 ~~Ge~~ai~G~sGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 738 (1230)
+.+..+.+.||+|+|||++.++|++.... --+.+|+.+
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~~----~~i~in~s~ 189 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCGG----KALNVNLPL 189 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHCC----EEECCSSCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCC----CEEEEECCC
T ss_conf 97676999899998889999999998599----789997742
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.98 E-value=0.08 Score=25.15 Aligned_cols=22 Identities=27% Similarity=0.293 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.+.++|.+|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993889999999719
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.97 E-value=0.08 Score=25.14 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.++++|.+|+|||||++.+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990989999999849
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.93 E-value=0.042 Score=26.92 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.++++|.+|+|||||++.+.+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~~ 27 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTGE 27 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999908899999998498
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=90.93 E-value=0.075 Score=25.33 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=18.8
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 299999599994999999895
Q 000907 700 VLTALMGVTGSGKTTLMDVLA 720 (1230)
Q Consensus 700 e~~ai~G~sGaGKSTLl~~l~ 720 (1230)
.-+||+|..|||||||...|.
T Consensus 7 Rni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 7 RNIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHH
T ss_conf 299999589899899999999
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=90.76 E-value=0.074 Score=25.38 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999959999499999989599
Q 000907 700 VLTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 700 e~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
-.+||+|-+.+|||||+++|++.
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 34888899999889999999779
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.73 E-value=0.087 Score=24.92 Aligned_cols=20 Identities=25% Similarity=0.516 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99995999949999998959
Q 000907 702 TALMGVTGSGKTTLMDVLAG 721 (1230)
Q Consensus 702 ~ai~G~sGaGKSTLl~~l~g 721 (1230)
++++|.+|+|||||++-+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999099999999970
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.72 E-value=0.051 Score=26.41 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.+.++|.+|+|||||++.+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994999999999709
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=90.70 E-value=0.052 Score=26.35 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.+.++|++|+|||||++.+.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999987899999984488
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.62 E-value=0.093 Score=24.75 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.++++|.+|+|||||++-+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=90.60 E-value=0.05 Score=26.45 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
++.+.||+|.||||+++.++..
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8996789998999999999999
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.52 E-value=0.1 Score=24.43 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.++++|.+|+|||||++.+.+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999993989999999829
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=90.44 E-value=0.088 Score=24.89 Aligned_cols=13 Identities=31% Similarity=0.363 Sum_probs=6.8
Q ss_pred CEEEEECCCCCCC
Q ss_conf 0534417985603
Q 000907 149 HALFMDEISTGLD 161 (1230)
Q Consensus 149 ~IllLDEPTSGLD 161 (1230)
.++++=-+-||=-
T Consensus 52 H~~I~G~tGsGKT 64 (433)
T d1e9ra_ 52 HLLVNGATGTGKS 64 (433)
T ss_dssp CEEEEECTTSSHH
T ss_pred EEEEEECCCCCHH
T ss_conf 5899907999689
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.40 E-value=0.1 Score=24.53 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999949999998959
Q 000907 701 LTALMGVTGSGKTTLMDVLAG 721 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g 721 (1230)
.+.++|.+|+|||||++-+..
T Consensus 8 KilllG~~~vGKTsll~~~~~ 28 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRI 28 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 799998999988999998950
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=90.25 E-value=0.096 Score=24.66 Aligned_cols=28 Identities=29% Similarity=0.485 Sum_probs=22.2
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 99957729999959999499999989599
Q 000907 694 GAFRPGVLTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 694 ~~i~~Ge~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
...+.| .+.+.||+|+|||.|.+.|++.
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCCCC-EEEEECCCCCCHHHHHHHHHHH
T ss_conf 436886-3888779985088999999998
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.22 E-value=0.086 Score=24.96 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.++++|.+|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.20 E-value=0.11 Score=24.22 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999949999998959
Q 000907 701 LTALMGVTGSGKTTLMDVLAG 721 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g 721 (1230)
.++++|++|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.19 E-value=0.12 Score=24.15 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.+.++|.+|+|||||++-+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=90.15 E-value=0.11 Score=24.18 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999949999998959
Q 000907 701 LTALMGVTGSGKTTLMDVLAG 721 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g 721 (1230)
.+.++|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.14 E-value=0.11 Score=24.17 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.+.++|.+|+|||||++-+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.08 E-value=0.11 Score=24.28 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.++++|.+|+|||||++.+...
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999998999999999649
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.05 E-value=0.11 Score=24.23 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999599994999999895
Q 000907 701 LTALMGVTGSGKTTLMDVLA 720 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~ 720 (1230)
.+.++|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999899999899999884
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.66 E-value=0.17 Score=23.15 Aligned_cols=28 Identities=32% Similarity=0.458 Sum_probs=24.6
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9995772999995999949999998959
Q 000907 694 GAFRPGVLTALMGVTGSGKTTLMDVLAG 721 (1230)
Q Consensus 694 ~~i~~Ge~~ai~G~sGaGKSTLl~~l~g 721 (1230)
.-+-.|+..+|.|++|+|||+|+..++.
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 5636788777667999898999999999
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.64 E-value=0.1 Score=24.42 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.+.++|.+|+|||||++-+.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999709
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.53 E-value=0.11 Score=24.31 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.++++|.+|+|||||++-+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999719
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=89.17 E-value=0.14 Score=23.67 Aligned_cols=26 Identities=42% Similarity=0.506 Sum_probs=21.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 57729999959999499999989599
Q 000907 697 RPGVLTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 697 ~~Ge~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
+|...+.++||+|+|||.+.+.|+..
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~ 76 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAAT 76 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 87669999788862489999999998
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.08 E-value=0.14 Score=23.53 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=24.0
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9995772999995999949999998959
Q 000907 694 GAFRPGVLTALMGVTGSGKTTLMDVLAG 721 (1230)
Q Consensus 694 ~~i~~Ge~~ai~G~sGaGKSTLl~~l~g 721 (1230)
+-++.|.++.+.|++|+||||++-.++.
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9866633699964887488999999999
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=89.05 E-value=0.17 Score=23.06 Aligned_cols=22 Identities=41% Similarity=0.469 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 2999995999949999998959
Q 000907 700 VLTALMGVTGSGKTTLMDVLAG 721 (1230)
Q Consensus 700 e~~ai~G~sGaGKSTLl~~l~g 721 (1230)
.++||.|+-||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999979999889999999998
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.03 E-value=0.16 Score=23.27 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299999599994999999895999
Q 000907 700 VLTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 700 e~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
..++|=|+-||||||+++.|+...
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199998998885999999999987
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.01 E-value=0.14 Score=23.52 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.++++|.+|+|||||++.+.+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999969999999997199
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.95 E-value=0.15 Score=23.48 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.+.++|.+|+|||||++-+...
T Consensus 4 KivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999995989999999729
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=88.93 E-value=0.19 Score=22.74 Aligned_cols=28 Identities=32% Similarity=0.500 Sum_probs=25.6
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9995772999995999949999998959
Q 000907 694 GAFRPGVLTALMGVTGSGKTTLMDVLAG 721 (1230)
Q Consensus 694 ~~i~~Ge~~ai~G~sGaGKSTLl~~l~g 721 (1230)
|-++.|.++-+-|++|+|||||.-.++.
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9866754789805876522799999999
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=88.68 E-value=0.15 Score=23.44 Aligned_cols=49 Identities=4% Similarity=0.059 Sum_probs=37.1
Q ss_pred HHCCCEEEEECCCCC-CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH
Q ss_conf 619977699499999-9999999999999998848988999914898889
Q 000907 828 VANPSIIFMDEPTSG-LDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDI 876 (1230)
Q Consensus 828 ~~~p~illlDEptsg-LD~~~~~~i~~~l~~~~~~~~tvi~~~hqp~~~i 876 (1230)
+.+..++++|+--.= -+...+..+..++......|+.+|+++..|..++
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKL 144 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGC
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHC
T ss_conf 76213010112655058657788999999987631663899548751001
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.59 E-value=0.17 Score=23.01 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.++++|.+|+|||||++-+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=88.57 E-value=0.16 Score=23.23 Aligned_cols=26 Identities=38% Similarity=0.452 Sum_probs=20.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 577299999599994999999895999
Q 000907 697 RPGVLTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 697 ~~Ge~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
+|+ -+..+||+|+|||-|.+.||...
T Consensus 67 p~~-niLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 67 SKS-NILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CCC-CEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCC-CEEEECCCCCCHHHHHHHHHHHC
T ss_conf 875-32441899863789999998644
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.53 E-value=0.21 Score=22.44 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=22.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 577299999599994999999895999
Q 000907 697 RPGVLTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 697 ~~Ge~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
+|.=-+||+|.-.+|||||++.|.+..
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 997089999724886999999997041
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.46 E-value=0.17 Score=23.01 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999949999998959
Q 000907 701 LTALMGVTGSGKTTLMDVLAG 721 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g 721 (1230)
-++++|..++|||||++.|..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHH
T ss_conf 999994789849999999999
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=87.49 E-value=0.28 Score=21.67 Aligned_cols=27 Identities=26% Similarity=0.533 Sum_probs=22.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 772999995999949999998959998
Q 000907 698 PGVLTALMGVTGSGKTTLMDVLAGRKT 724 (1230)
Q Consensus 698 ~Ge~~ai~G~sGaGKSTLl~~l~g~~~ 724 (1230)
.+-.++++|.+-+|||||+|.|.|+..
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 752789986675443555425426615
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=86.37 E-value=0.32 Score=21.31 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 72999995999949999998959
Q 000907 699 GVLTALMGVTGSGKTTLMDVLAG 721 (1230)
Q Consensus 699 Ge~~ai~G~sGaGKSTLl~~l~g 721 (1230)
..+++|.|..|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 40899977997888999999998
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=86.24 E-value=0.11 Score=24.27 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999949999998959998
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRKT 724 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~~ 724 (1230)
-+.+.|++|+|||||.+.+++..+
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 089988998529999999987379
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=85.53 E-value=0.21 Score=22.51 Aligned_cols=24 Identities=38% Similarity=0.596 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299999599994999999895999
Q 000907 700 VLTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 700 e~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
-++.|-|.-|||||||++-+....
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred CEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 889986488899999999998567
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=85.44 E-value=0.26 Score=21.88 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=20.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 772999995999949999998959
Q 000907 698 PGVLTALMGVTGSGKTTLMDVLAG 721 (1230)
Q Consensus 698 ~Ge~~ai~G~sGaGKSTLl~~l~g 721 (1230)
|.=-+|++|.-++|||||++.|.+
T Consensus 2 p~ini~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 2 PHVNVGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 971899995889809999999999
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=85.40 E-value=0.31 Score=21.43 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999949999998959998
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRKT 724 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~~ 724 (1230)
-..++|++|.|||+++.-|+.+..
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 967988898867799999999998
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.89 E-value=0.34 Score=21.18 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.+.++|.+|+|||||++-+...
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999889999999679
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=84.78 E-value=0.22 Score=22.30 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=9.3
Q ss_pred EEEECCCCCCHHHHH
Q ss_conf 999959999499999
Q 000907 702 TALMGVTGSGKTTLM 716 (1230)
Q Consensus 702 ~ai~G~sGaGKSTLl 716 (1230)
+.|.|+.||||||.+
T Consensus 27 ~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 27 LLIMAGAGSGKTRVL 41 (318)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEEECCCCCHHHHH
T ss_conf 899952986689999
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.73 E-value=0.36 Score=21.01 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999949999998959
Q 000907 701 LTALMGVTGSGKTTLMDVLAG 721 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g 721 (1230)
.+.++|..|+|||||++-+..
T Consensus 4 KivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999888999998840
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.96 E-value=0.25 Score=22.04 Aligned_cols=58 Identities=19% Similarity=0.356 Sum_probs=34.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 23599998889889999999999961997769949999999999999999999988489889999148
Q 000907 804 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQ 871 (1230)
Q Consensus 804 ~~g~~~~~~lSgGerkrl~ia~~l~~~p~illlDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~hq 871 (1230)
.+-.||...+++.-..=+. +.+--++.+ .+..|+-+.+...+..+. +.+..+++.+..
T Consensus 100 liDtPGh~dF~~ev~~al~-----~~D~allVV-da~eGv~~qT~~~~~~a~----~~~~p~i~viNK 157 (341)
T d1n0ua2 100 LIDSPGHVDFSSEVTAALR-----VTDGALVVV-DTIEGVCVQTETVLRQAL----GERIKPVVVINK 157 (341)
T ss_dssp EECCCCCCSSCHHHHHHHH-----TCSEEEEEE-ETTTBSCHHHHHHHHHHH----HTTCEEEEEEEC
T ss_pred EECCCCCHHHHHHHHHHHH-----HCCCEEEEE-ECCCCCCHHHHHHHHHHH----HCCCCEEEEEEC
T ss_conf 9737873889999998875-----237249998-656682046999999998----769986999877
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=83.31 E-value=0.35 Score=21.05 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599994999999895999
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRK 723 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~ 723 (1230)
.+.|=|+-|+||||+++.|+...
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l 28 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALG 28 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998986778999999999981
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=83.13 E-value=0.33 Score=21.22 Aligned_cols=20 Identities=40% Similarity=0.750 Sum_probs=16.3
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 57729999959999499999
Q 000907 697 RPGVLTALMGVTGSGKTTLM 716 (1230)
Q Consensus 697 ~~Ge~~ai~G~sGaGKSTLl 716 (1230)
+.|++..+.|-||.|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCE
T ss_conf 88988999704779856023
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=83.05 E-value=0.32 Score=21.33 Aligned_cols=16 Identities=31% Similarity=0.493 Sum_probs=12.1
Q ss_pred EEEEECCCCCCHHHHH
Q ss_conf 9999959999499999
Q 000907 701 LTALMGVTGSGKTTLM 716 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl 716 (1230)
-+.|.|+.|+||||.+
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEEECCCCHHHHH
T ss_conf 9899962884389999
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=82.44 E-value=0.55 Score=19.80 Aligned_cols=24 Identities=38% Similarity=0.378 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999949999998959998
Q 000907 701 LTALMGVTGSGKTTLMDVLAGRKT 724 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~~~ 724 (1230)
.+.|=|+-|+||||+++.|+....
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~ 31 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAAS 31 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999988866789999999999865
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=82.36 E-value=0.35 Score=21.10 Aligned_cols=18 Identities=44% Similarity=0.853 Sum_probs=15.6
Q ss_pred CCEEEEEECCCCCCHHHH
Q ss_conf 772999995999949999
Q 000907 698 PGVLTALMGVTGSGKTTL 715 (1230)
Q Consensus 698 ~Ge~~ai~G~sGaGKSTL 715 (1230)
.|++..+.|.||.|||||
T Consensus 13 ~~~valffGLSGTGKTTL 30 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTL 30 (318)
T ss_dssp TCCEEEEEECTTSCHHHH
T ss_pred CCCEEEEECCCCCCCCCC
T ss_conf 998899973687981422
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=81.96 E-value=0.57 Score=19.74 Aligned_cols=41 Identities=12% Similarity=0.236 Sum_probs=26.5
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9776994999999999999999999998848988999914898
Q 000907 831 PSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPS 873 (1230)
Q Consensus 831 p~illlDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~hqp~ 873 (1230)
.+++++||.-. |+..+...+.+.+.+- ..+..+|+++++++
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~-~~~~~~il~tn~~~ 156 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 156 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CEEEEEECCCC-CCHHHHHHHHHHHHCC-CCCEEEEEECCCCC
T ss_conf 87999978110-8999999999998568-98869999738856
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=81.81 E-value=0.53 Score=19.92 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959999499999989599
Q 000907 701 LTALMGVTGSGKTTLMDVLAGR 722 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~g~ 722 (1230)
.+.+.||+|+||||+.+.++..
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~ 47 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRY 47 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 7988899987599999999982
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=81.71 E-value=0.46 Score=20.30 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999599994999999895
Q 000907 701 LTALMGVTGSGKTTLMDVLA 720 (1230)
Q Consensus 701 ~~ai~G~sGaGKSTLl~~l~ 720 (1230)
-++++|.-++|||||+..|.
T Consensus 5 Ni~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 5 NLIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 89999447999999999999
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.45 E-value=0.33 Score=21.22 Aligned_cols=29 Identities=17% Similarity=0.089 Sum_probs=24.2
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 89995772999995999949999998959
Q 000907 693 SGAFRPGVLTALMGVTGSGKTTLMDVLAG 721 (1230)
Q Consensus 693 s~~i~~Ge~~ai~G~sGaGKSTLl~~l~g 721 (1230)
-..+..|+..+|+|++|+|||+|+.-++.
T Consensus 62 l~pig~GQr~~If~~~g~GKt~ll~~~~~ 90 (285)
T d2jdia3 62 LVPIGRGQRELIIGDRQTGKTSIAIDTII 90 (285)
T ss_dssp HSCCBTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 46766787787656888885899999997
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=80.33 E-value=0.64 Score=19.40 Aligned_cols=20 Identities=30% Similarity=0.321 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99995999949999998959
Q 000907 702 TALMGVTGSGKTTLMDVLAG 721 (1230)
Q Consensus 702 ~ai~G~sGaGKSTLl~~l~g 721 (1230)
++++|.-.+|||||++.|..
T Consensus 12 i~viGHVd~GKSTL~~~Ll~ 31 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLH 31 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99993789898999999999
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=80.15 E-value=0.5 Score=20.09 Aligned_cols=19 Identities=47% Similarity=0.823 Sum_probs=16.0
Q ss_pred CCEEEEEECCCCCCHHHHH
Q ss_conf 7729999959999499999
Q 000907 698 PGVLTALMGVTGSGKTTLM 716 (1230)
Q Consensus 698 ~Ge~~ai~G~sGaGKSTLl 716 (1230)
.|....+.|-||.|||||-
T Consensus 13 ~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 13 QGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCCCCCE
T ss_conf 8987999736778812051
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=80.01 E-value=0.71 Score=19.12 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=16.7
Q ss_pred CEEEEEECCCCCCHHHHHHH
Q ss_conf 72999995999949999998
Q 000907 699 GVLTALMGVTGSGKTTLMDV 718 (1230)
Q Consensus 699 Ge~~ai~G~sGaGKSTLl~~ 718 (1230)
+.++.|-||.|+||||++..
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHH
T ss_pred CCEEEEECCCCCCCEEHHHH
T ss_conf 88599976898875216999
|