Citrus Sinensis ID: 000909
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1230 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LHK4 | 1241 | Putative ABC transporter | yes | no | 0.979 | 0.970 | 0.655 | 0.0 | |
| Q6YUU5 | 1245 | Putative multidrug resist | no | no | 0.978 | 0.967 | 0.548 | 0.0 | |
| Q9LHD1 | 1240 | ABC transporter B family | yes | no | 0.983 | 0.975 | 0.519 | 0.0 | |
| Q9LSJ5 | 1225 | ABC transporter B family | no | no | 0.977 | 0.981 | 0.508 | 0.0 | |
| Q9LSJ6 | 1240 | ABC transporter B family | no | no | 0.983 | 0.975 | 0.506 | 0.0 | |
| Q9LSJ8 | 1228 | ABC transporter B family | no | no | 0.977 | 0.978 | 0.506 | 0.0 | |
| Q9LSJ2 | 1229 | ABC transporter B family | no | no | 0.967 | 0.968 | 0.490 | 0.0 | |
| Q9LJX0 | 1252 | ABC transporter B family | no | no | 0.979 | 0.962 | 0.433 | 0.0 | |
| Q8LPK2 | 1273 | ABC transporter B family | no | no | 0.977 | 0.944 | 0.432 | 0.0 | |
| Q9SGY1 | 1227 | ABC transporter B family | no | no | 0.975 | 0.977 | 0.423 | 0.0 |
| >sp|Q9LHK4|AB8B_ARATH Putative ABC transporter B family member 8 OS=Arabidopsis thaliana GN=ABCB8 PE=5 SV=1 | Back alignment and function desciption |
|---|
Score = 1647 bits (4266), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 812/1239 (65%), Positives = 1002/1239 (80%), Gaps = 34/1239 (2%)
Query: 5 KNKNNIGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNH 64
K+ N +IFRFAD DI+LMVLG+VGAIGDGMSTN LVF SRIMN+LG+ Q
Sbjct: 13 KSSRNTHVIFRFADWIDIVLMVLGSVGAIGDGMSTNVSLVFVSRIMNTLGYSQHNPSST- 71
Query: 65 HENFLDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFF 124
NF +E++KCSLYFVYLGLA++ VAF+EGYCWSKTSERQV+KIR YLEAVLRQEV FF
Sbjct: 72 --NFKEEIQKCSLYFVYLGLAILGVAFMEGYCWSKTSERQVMKIRRTYLEAVLRQEVSFF 129
Query: 125 DSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFP 184
DS +TSE+I++IS DTSLIQ+LLSEKVPIF+M+ SVFI+GL FS YFSWRL++VA P
Sbjct: 130 DSD--ISTSEIIHTISTDTSLIQQLLSEKVPIFLMHISVFITGLVFSAYFSWRLTVVAIP 187
Query: 185 TLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAI 244
TL+LL+IPG+IYGKYL++LSKK++KEY KAN+IVEQALSSIKT+ SF+AE +II +Y +
Sbjct: 188 TLVLLLIPGLIYGKYLVHLSKKSFKEYTKANSIVEQALSSIKTILSFTAETQIIKKYSEV 247
Query: 245 LDSTTKLGIKQGTAKGLAVGSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILS 304
L+ KLG+KQG AKGLAVGS+G+SF IWAFLAWYGS LVM K ETGG+IYAAGISF+L
Sbjct: 248 LERHKKLGLKQGLAKGLAVGSSGISFTIWAFLAWYGSRLVMHKQETGGRIYAAGISFVLG 307
Query: 305 GLSLGSALPELKYFTEASIAASRIFDRIDRVPEIDGEDTK-GLVLDE-VRGEIEFEHVKF 362
G+SLG+AL E++YF+EAS+AA+RI RIDR+ EIDGEDTK G + E ++G +EFE V
Sbjct: 308 GISLGTALTEIRYFSEASVAAARICSRIDRISEIDGEDTKKGFIPGEKMKGRVEFERVTL 367
Query: 363 SYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIR 422
Y SRP++I+LKDF L V G+SVAL+GASGSGKST IAL+QRFYD +G VRIDG DI+
Sbjct: 368 VYLSRPETIILKDFTLTVDVGQSVALMGASGSGKSTVIALLQRFYDPCEGFVRIDGFDIK 427
Query: 423 RLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEG 482
LQLKW+R+ +G+VSQ+HALFGTSI +N+MFGK A+MDEVI+AA AANAH FI QLP G
Sbjct: 428 TLQLKWMRQHIGVVSQDHALFGTSIMENLMFGKNKASMDEVISAAKAANAHGFITQLPNG 487
Query: 483 YETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLG 542
Y+T +G RGALLSGGQKQRIAIARAII+NPVILLLDEATSALD ESETL+QNALDQ + G
Sbjct: 488 YDTHIGNRGALLSGGQKQRIAIARAIIRNPVILLLDEATSALDGESETLIQNALDQVAAG 547
Query: 543 RTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQFSCDDQE 602
RTTLVVAHKLSTVR A++IA+++NG + E+G+H DL+ + + HYAK+ KLQRQF + Q+
Sbjct: 548 RTTLVVAHKLSTVRGANIIAMLENGSVRELGSHEDLMTK-NNHYAKLVKLQRQFGHEHQQ 606
Query: 603 TI------PETHVSSVTRSSGGRLSAARSSPAIFASPLPV-------IDSPQPVTYLPPS 649
+ PE T +S RLS RSSP + SP+ + I+ P T S
Sbjct: 607 DLQDRVNSPEIQQRWSTMNSVIRLSN-RSSPDLIVSPITLESNHTTKINENIPST----S 661
Query: 650 FFRLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSL 709
F RLL +PEWK L+G +SA G++QP YAL+IGGMISAFFAKS EMQ +I YSL
Sbjct: 662 FTRLLPFVSPEWKSSLVGCISATTFGAIQPVYALSIGGMISAFFAKSSQEMQDKIHIYSL 721
Query: 710 IFCSLSLISLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSR 769
IF SL+ +S+ NLLQHY+FA MG RL +R+RL+MLEKI TFE AWFD E+N + +CSR
Sbjct: 722 IFISLTFLSITLNLLQHYSFAKMGERLMQRLRLKMLEKIFTFEPAWFDVEENFTSEICSR 781
Query: 770 LSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKV 829
L+NE S+VKSLVADR+SLLVQT S V IAMI+GL+++WKLA+VMIAVQPL+ILCFYT+KV
Sbjct: 782 LNNEVSIVKSLVADRISLLVQTISGVTIAMIIGLLISWKLALVMIAVQPLSILCFYTKKV 841
Query: 830 LLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWL 889
LLS +S N+ AQNRS+QIA EA+ NH+IVTS GS K+++IFD AQ E +++ RK +WL
Sbjct: 842 LLSKISNNYAYAQNRSSQIASEAIYNHKIVTSLGSTKKIIEIFDNAQYEAKRKGRKAAWL 901
Query: 890 AGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSD 949
AG GMGSAQCLTF++WALDFWYGG LVQKG+ISAGDVFKTFF+LVSTGKVIAEAGSMTSD
Sbjct: 902 AGFGMGSAQCLTFLTWALDFWYGGVLVQKGEISAGDVFKTFFVLVSTGKVIAEAGSMTSD 961
Query: 950 LAKGSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALV 1009
LAKG+ A++SVF ILDR P S + + G K+ I G+IE++ +DF+YP+RP LV
Sbjct: 962 LAKGTAAISSVFNILDR----PSSHE--NTNHGEKMGTIQGRIELKNIDFSYPNRPSILV 1015
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKH 1069
LR FS+++KPGTS+GLVG SGCGKSTVI LIQRFYDVE G V++D ++R++++ WYRKH
Sbjct: 1016 LRDFSLDIKPGTSIGLVGTSGCGKSTVIALIQRFYDVEIGCVKIDSENLRDINIKWYRKH 1075
Query: 1070 TALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGV 1129
TALVSQEPV+Y+G+I+DNI+ G+ +A+E+EVVEAA+AANAH+FIS+++ GY+TECGERGV
Sbjct: 1076 TALVSQEPVVYSGSIQDNIILGRPEATEDEVVEAAKAANAHDFISAMEKGYKTECGERGV 1135
Query: 1130 QLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGR--TTIVVAH 1187
QLSGGQ+QRIAIARA +R+P ILLLDE TS+LD SEQ VQ+AL RIM R TT+VVAH
Sbjct: 1136 QLSGGQKQRIAIARAFLRSPIILLLDEVTSSLDSNSEQEVQDALARIMASRNMTTVVVAH 1195
Query: 1188 RLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLA 1226
RLNT+K LD IAL+ DG V+E G+Y L ++ G F LA
Sbjct: 1196 RLNTLKNLDCIALIVDGTVIETGSYDHLKNIGGQFSRLA 1234
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6YUU5|MDR_ORYSJ Putative multidrug resistance protein OS=Oryza sativa subsp. japonica GN=Os02g0190300 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1338 bits (3463), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 673/1227 (54%), Positives = 919/1227 (74%), Gaps = 23/1227 (1%)
Query: 13 IFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEV 72
+F AD D+ LMVLG +GA+GDG+ST +L+ SRI N LG G ++ F +V
Sbjct: 23 VFMHADAADVALMVLGLLGAMGDGISTPVMLLITSRIFNDLGSGADIVKE-----FSSKV 77
Query: 73 EKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTT 132
+ V+L A V+AFLEGYCW++T+ERQ ++R +YL AVLRQ+V +FD + +T
Sbjct: 78 NVNARNLVFLAAASWVMAFLEGYCWARTAERQASRMRARYLRAVLRQDVEYFDLKKGST- 136
Query: 133 SEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLIIP 192
+EVI S+S D+ ++Q++LSEKVP FVMNA++F A WRL+LVA P+++LLIIP
Sbjct: 137 AEVITSVSNDSLVVQDVLSEKVPNFVMNAAMFAGSYAVGFALLWRLTLVALPSVVLLIIP 196
Query: 193 GMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLG 252
G +YG+ L+ L+++ ++Y + AI EQA+SS +TVYSF AER + ++ A L+ + +LG
Sbjct: 197 GFMYGRILVGLARRIREQYTRPGAIAEQAVSSARTVYSFVAERTTMAQFSAALEESARLG 256
Query: 253 IKQGTAKGLAVGSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSAL 312
+KQG AKG+AVGS G++FAIWAF WYGS LVM+ G GG ++A + ++ GL+LGS L
Sbjct: 257 LKQGLAKGIAVGSNGITFAIWAFNVWYGSRLVMYHGYQGGTVFAVSAAIVVGGLALGSGL 316
Query: 313 PELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIV 372
+KYF+EAS AA RI + I RVP+ID E G L V GE+EF +V+F YPSRP+S +
Sbjct: 317 SNVKYFSEASSAAERILEVIRRVPKIDSESDTGEELANVTGEVEFRNVEFCYPSRPESPI 376
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRRE 432
FNL+V AG++VALVG SGSGKST IAL++RFYD G V +DGVDIRRL+LKW+R +
Sbjct: 377 FVSFNLRVPAGRTVALVGGSGSGKSTVIALLERFYDPSAGEVMVDGVDIRRLRLKWLRAQ 436
Query: 433 MGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGA 492
MGLVSQE ALF TSI++NI+FGK +AT +EV+AAA AANAHNFI QLP+GY+T+VGERG
Sbjct: 437 MGLVSQEPALFATSIRENILFGKEEATAEEVVAAAKAANAHNFISQLPQGYDTQVGERGV 496
Query: 493 LLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKL 552
+SGGQKQRIAIARAI+K+P ILLLDEATSALD+ESE +VQ ALD AS+GRTT+V+AH+L
Sbjct: 497 QMSGGQKQRIAIARAILKSPKILLLDEATSALDTESERVVQEALDLASMGRTTIVIAHRL 556
Query: 553 STVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQFSCDDQETIPET-HVSS 611
ST+RNAD+IAV+ +G + E+G H++LI +G Y+ + +LQ+ ++ + I T S+
Sbjct: 557 STIRNADIIAVMQSGEVKELGPHDELIANDNGLYSSLVRLQQTRDSNEIDEIGVTGSTSA 616
Query: 612 VTRSSGGRLSAARSSPAIFASPLPVID------SPQPVTYLP-PSFFRLLSLNAPEWKQG 664
V +SS +S S+ + +S + D + +P LP PSF RLL LNAPEWKQ
Sbjct: 617 VGQSSSHSMSRRFSAASRSSSARSLGDARDDDNTEKP--KLPVPSFRRLLMLNAPEWKQA 674
Query: 665 LIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLL 724
L+GS SA+ G +QP YA +G MIS +F H+E++ + RTY+LIF L+++S N+
Sbjct: 675 LMGSFSAVVFGGIQPAYAYAMGSMISVYFLTDHAEIKDKTRTYALIFVGLAVLSFLINIG 734
Query: 725 QHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADR 784
QHYNF MG LTKRIR +ML KILTFE WFD ++NSSGA+CS+L+ +A++V+SLV DR
Sbjct: 735 QHYNFGAMGEYLTKRIREQMLAKILTFEIGWFDRDENSSGAICSQLAKDANVVRSLVGDR 794
Query: 785 VSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNR 844
++L++QT SAV IA MGLV+AW+LA+VMIAVQPL I+CFY R+VLL S+S + AQ
Sbjct: 795 MALVIQTISAVLIACTMGLVIAWRLALVMIAVQPLIIVCFYARRVLLKSMSKKSIHAQAE 854
Query: 845 STQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMS 904
S+++A EAV N R +T+F S ++L++F+++Q+ PRK++ ++SW AG+G+G++ L +
Sbjct: 855 SSKLAAEAVSNLRTITAFSSQERILRLFEQSQDGPRKESIRQSWFAGLGLGTSMSLMTCT 914
Query: 905 WALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKIL 964
WALDFWYGG L+ + ISA ++F+TF ILVSTG+VIA+AGSMT+DLAKG+ AVASVF +L
Sbjct: 915 WALDFWYGGRLMAEHHISAKELFQTFMILVSTGRVIADAGSMTTDLAKGADAVASVFAVL 974
Query: 965 DRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVG 1024
DR++ I D +G K +K+ G++++R VDFAYPSRPD ++ + F++ ++PG S
Sbjct: 975 DRETEID-----PDNPQGYKPEKLKGEVDIRGVDFAYPSRPDVIIFKGFTLSIQPGKSTA 1029
Query: 1025 LVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNI 1084
LVG+SG GKST+IGLI+RFYD +GSV++DG D++ ++ R+H LVSQEP ++AG I
Sbjct: 1030 LVGQSGSGKSTIIGLIERFYDPIRGSVKIDGRDIKAYNLRALRRHIGLVSQEPTLFAGTI 1089
Query: 1085 RDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARA 1144
R+NIV+G ASE E+ +AAR+ANAH+FIS+LKDGY+T CGERGVQLSGGQ+QRIAIARA
Sbjct: 1090 RENIVYGTETASEAEIEDAARSANAHDFISNLKDGYDTWCGERGVQLSGGQKQRIAIARA 1149
Query: 1145 IIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADG 1204
I++NP ILLLDEATSALD QSE+VVQEALDR+M+GRT++VVAHRL+TI+ D I ++ G
Sbjct: 1150 ILKNPAILLLDEATSALDSQSEKVVQEALDRVMIGRTSVVVAHRLSTIQNCDLITVLEKG 1209
Query: 1205 RVVERGTYAQLTH--MRGAFFNLATLQ 1229
VVE+GT+A L + G +F+L LQ
Sbjct: 1210 TVVEKGTHASLMAKGLSGTYFSLVNLQ 1236
|
Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q9LHD1|AB15B_ARATH ABC transporter B family member 15 OS=Arabidopsis thaliana GN=ABCB15 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1310 bits (3390), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 646/1243 (51%), Positives = 912/1243 (73%), Gaps = 33/1243 (2%)
Query: 5 KNKNN----IGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQS 60
+NK N + IF AD D LLM LG +GA+GDG +T +L+ S++MN++G
Sbjct: 11 RNKMNCFGSVRSIFMHADGVDWLLMGLGLIGAVGDGFTTPLVLLITSKLMNNIG-----G 65
Query: 61 QQNHHENFLDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQE 120
+ + F+ + K S+ +Y+ VV FLEGYCW++T ERQ ++R KYL AVLRQ+
Sbjct: 66 SSFNTDTFMQSISKNSVALLYVACGSWVVCFLEGYCWTRTGERQTARMREKYLRAVLRQD 125
Query: 121 VGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSL 180
VG+FD T+TS+VI S+S D+ +IQ++LSEK+P F+M+AS F+ WRL++
Sbjct: 126 VGYFDLH-VTSTSDVITSVSSDSFVIQDVLSEKLPNFLMSASTFVGSYIVGFILLWRLAI 184
Query: 181 VAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDR 240
V P ++LL+IPG++YG+ LI +S+K +EY +A + EQA+SS++TVY+FS ER+ I +
Sbjct: 185 VGLPFIVLLVIPGLMYGRALISISRKIREEYNEAGFVAEQAISSVRTVYAFSGERKTISK 244
Query: 241 YEAILDSTTKLGIKQGTAKGLAVGSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGIS 300
+ L + KLGIKQG AKG+ +GS G++FA+W F++WYGS +VM+ G GG ++A +
Sbjct: 245 FSTALQGSVKLGIKQGLAKGITIGSNGITFAMWGFMSWYGSRMVMYHGAQGGTVFAVAAA 304
Query: 301 FILSGLSLGSALPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHV 360
+ G+SLG L LKYF EA+ RI + I+RVP+ID ++ G L+++RGE+EF++V
Sbjct: 305 IAIGGVSLGGGLSNLKYFFEAASVGERIMEVINRVPKIDSDNPDGHKLEKIRGEVEFKNV 364
Query: 361 KFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVD 420
KF YPSR ++ + DF L+V +GK+VALVG SGSGKST I+L+QRFYD G + IDGV
Sbjct: 365 KFVYPSRLETSIFDDFCLRVPSGKTVALVGGSGSGKSTVISLLQRFYDPLAGEILIDGVS 424
Query: 421 IRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLP 480
I +LQ+KW+R +MGLVSQE ALF T+IK+NI+FGK DA+MD+V+ AA A+NAHNFI QLP
Sbjct: 425 IDKLQVKWLRSQMGLVSQEPALFATTIKENILFGKEDASMDDVVEAAKASNAHNFISQLP 484
Query: 481 EGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS 540
GYET+VGERG +SGGQKQRIAIARAIIK+P ILLLDEATSALDSESE +VQ AL+ AS
Sbjct: 485 NGYETQVGERGVQMSGGQKQRIAIARAIIKSPTILLLDEATSALDSESERVVQEALENAS 544
Query: 541 LGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQFSCDD 600
+GRTT+++AH+LST+RNAD+I+VV NG +VE G+H++L+ IDG Y+ + LQ+ +
Sbjct: 545 IGRTTILIAHRLSTIRNADVISVVKNGHIVETGSHDELMENIDGQYSTLVHLQQ---IEK 601
Query: 601 QETIPETHVSSVTRSSGGRLSAARSSPAIFASPLPVIDSPQPVTYLP-------PSFFRL 653
Q+ + ++ S +++R S +S + P + L PSF RL
Sbjct: 602 QDINVSVKIGPISDPSKDIRNSSRVSTLSRSSSANSVTGPSTIKNLSEDNKPQLPSFKRL 661
Query: 654 LSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCS 713
L++N PEWKQ L G +SA G++QP YA ++G M+S +F SH E++ + R Y+L F
Sbjct: 662 LAMNLPEWKQALYGCISATLFGAIQPAYAYSLGSMVSVYFLTSHDEIKEKTRIYALSFVG 721
Query: 714 LSLISLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNE 773
L+++S N+ QHYNFAYMG LTKRIR RML K+LTFE WFD ++NSSGA+CSRL+ +
Sbjct: 722 LAVLSFLINISQHYNFAYMGEYLTKRIRERMLSKVLTFEVGWFDRDENSSGAICSRLAKD 781
Query: 774 ASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSS 833
A++V+SLV DR++L+VQT SAV IA MGLV+AW+LA+VMIAVQP+ I+CFYTR+VLL S
Sbjct: 782 ANVVRSLVGDRMALVVQTVSAVTIAFTMGLVIAWRLALVMIAVQPVIIVCFYTRRVLLKS 841
Query: 834 VSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIG 893
+S +KAQ+ S+++A EAV N R +T+F S +++++ ++AQE PR+++ ++SW AG G
Sbjct: 842 MSKKAIKAQDESSKLAAEAVSNVRTITAFSSQERIMKMLEKAQESPRRESIRQSWFAGFG 901
Query: 894 MGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKG 953
+ +Q LT +WALDFWYGG L+Q G I+A +F+TF ILVSTG+VIA+AGSMT+DLAKG
Sbjct: 902 LAMSQSLTSCTWALDFWYGGRLIQDGYITAKALFETFMILVSTGRVIADAGSMTTDLAKG 961
Query: 954 STAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQF 1013
S AV SVF +LDR + I G T ++I+G++E VDF+YP+RPD ++ + F
Sbjct: 962 SDAVGSVFAVLDRYTSIDPEDPDGYET-----ERITGQVEFLDVDFSYPTRPDVIIFKNF 1016
Query: 1014 SMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALV 1073
S++++ G S +VG SG GKST+IGLI+RFYD +G V++DG D+R + R+H ALV
Sbjct: 1017 SIKIEEGKSTAIVGPSGSGKSTIIGLIERFYDPLKGIVKIDGRDIRSYHLRSLRRHIALV 1076
Query: 1074 SQEPVIYAGNIRDNIVFG----KLDASENEVVEAARAANAHEFISSLKDGYETECGERGV 1129
SQEP ++AG IR+NI++G K+D + E++EAA+AANAH+FI+SL +GY+T CG+RGV
Sbjct: 1077 SQEPTLFAGTIRENIIYGGVSDKIDEA--EIIEAAKAANAHDFITSLTEGYDTYCGDRGV 1134
Query: 1130 QLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRL 1189
QLSGGQ+QRIAIARA+++NP++LLLDEATSALD QSE+VVQ+AL+R+M+GRT++V+AHRL
Sbjct: 1135 QLSGGQKQRIAIARAVLKNPSVLLLDEATSALDSQSERVVQDALERVMVGRTSVVIAHRL 1194
Query: 1190 NTIKKLDSIALVADGRVVERGTYAQLTHM--RGAFFNLATLQS 1230
+TI+ D+IA++ G++VERGT++ L G +F+L +LQ+
Sbjct: 1195 STIQNCDAIAVLDKGKLVERGTHSSLLSKGPTGIYFSLVSLQT 1237
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSJ5|AB18B_ARATH ABC transporter B family member 18 OS=Arabidopsis thaliana GN=ABCB18 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1299 bits (3361), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 632/1242 (50%), Positives = 890/1242 (71%), Gaps = 40/1242 (3%)
Query: 5 KNKNNIGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNH 64
K+ +I IF AD D +LM LG +GA+GDG T + S+++N++G
Sbjct: 3 KSFGSIRSIFMHADGVDWMLMALGLIGAVGDGFITPIIFFICSKLLNNVG-----GSSFD 57
Query: 65 HENFLDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFF 124
E F+ V K ++ VY+ A V+ F+EGYCW++T ERQ K+R KYL+AVLRQ+VG+F
Sbjct: 58 DETFMQTVAKNAVALVYVACASWVICFIEGYCWTRTGERQAAKMREKYLKAVLRQDVGYF 117
Query: 125 DSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFP 184
D T+TS+VI S+S D+ +IQ+ LSEK+P F+MN S F++ WRL++V FP
Sbjct: 118 DLH-VTSTSDVITSVSSDSLVIQDFLSEKLPNFLMNTSAFVASYIVGFLLLWRLTIVGFP 176
Query: 185 TLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAI 244
++LL+IPG++YG+ LI +S K +EY +A +I EQ +SS++TVY+F +E+++I+++
Sbjct: 177 FIILLLIPGLMYGRALIRISMKIREEYNEAGSIAEQVISSVRTVYAFGSEKKMIEKFSTA 236
Query: 245 LDSTTKLGIKQGTAKGLAVGSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILS 304
L + KLG++QG AKG+A+GS G+++AIW FL WYGS +VM G GG + + +
Sbjct: 237 LQGSVKLGLRQGLAKGIAIGSNGITYAIWGFLTWYGSRMVMNHGSKGGTVSSVIVCVTFG 296
Query: 305 GLSLGSALPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSY 364
G SLG +L LKYF+EA + RI I+RVP ID ++ +G +L++ RGE+EF HVKF+Y
Sbjct: 297 GTSLGQSLSNLKYFSEAFVVGERIMKVINRVPGIDSDNLEGQILEKTRGEVEFNHVKFTY 356
Query: 365 PSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRL 424
PSRP++ + D L+V +GK+VALVG SGSGKST I+L+QRFYD G + IDG+ I +L
Sbjct: 357 PSRPETPIFDDLCLRVPSGKTVALVGGSGSGKSTVISLLQRFYDPIAGEILIDGLPINKL 416
Query: 425 QLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYE 484
Q+KW+R +MGLVSQE LF TSIK+NI+FGK DA+MDEV+ AA A+NAH+FI Q P Y+
Sbjct: 417 QVKWLRSQMGLVSQEPVLFATSIKENILFGKEDASMDEVVEAAKASNAHSFISQFPNSYQ 476
Query: 485 TKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRT 544
T+VGERG LSGGQKQRIAIARAIIK+P+ILLLDEATSALDSESE +VQ ALD AS+GRT
Sbjct: 477 TQVGERGVQLSGGQKQRIAIARAIIKSPIILLLDEATSALDSESERVVQEALDNASIGRT 536
Query: 545 TLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQFSCDDQE-- 602
T+V+AH+LST+RNAD+I VV NG ++E G+H +L+ ++DG Y + +LQ+ D++E
Sbjct: 537 TIVIAHRLSTIRNADVICVVHNGRIIETGSHEELLEKLDGQYTSLVRLQQ---VDNKESD 593
Query: 603 --TIPETHVSSVTRSSGGRLSAARSSPAIF---ASPLPVID----SPQPVTYLPPSFFRL 653
++ E SS+++ + SP F S V D SP+ L PSF RL
Sbjct: 594 HISVEEGQASSLSKD-------LKYSPKEFIHSTSSNIVRDFPNLSPKDGKSLVPSFKRL 646
Query: 654 LSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCS 713
+S+N PEWK L G L A G+VQP Y+ + G M+S +F SH +++ + R Y L+F
Sbjct: 647 MSMNRPEWKHALYGCLGAALFGAVQPIYSYSSGSMVSVYFLASHDQIKEKTRIYVLLFVG 706
Query: 714 LSLISLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNE 773
L+L + N+ QHY FAYMG LTKRIR RML KILTFE WFD+++NSSGA+CSRL+ +
Sbjct: 707 LALFTFLSNISQHYGFAYMGEYLTKRIRERMLGKILTFEVNWFDKDENSSGAICSRLAKD 766
Query: 774 ASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSS 833
A+MV+SLV DR+SLLVQT SAV+I +GLV++W+ ++VM++VQP+ ++CFYT++VLL S
Sbjct: 767 ANMVRSLVGDRMSLLVQTISAVSITCAIGLVISWRFSIVMMSVQPVIVVCFYTQRVLLKS 826
Query: 834 VSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIG 893
+S N +K Q+ S+++A EAV N R +T+F S +++ + QE PRK + ++SWLAGI
Sbjct: 827 MSRNAIKGQDESSKLAAEAVSNIRTITAFSSQERIINLLKMVQEGPRKDSARQSWLAGIM 886
Query: 894 MGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKG 953
+G++Q L AL+FWYGG L+ G++ + + + F I STG+VIAEAG+MT DL KG
Sbjct: 887 LGTSQSLITCVSALNFWYGGKLIADGKMMSKEFLEIFLIFASTGRVIAEAGTMTKDLVKG 946
Query: 954 STAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQF 1013
S AVASVF +LDR + I + G +K+ G+I VDFAYP+RPD ++ + F
Sbjct: 947 SDAVASVFAVLDRNTTI-----EPENPDGYVPKKVKGQISFSNVDFAYPTRPDVIIFQNF 1001
Query: 1014 SMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALV 1073
S++++ G S +VG SG GKST+I LI+RFYD +G V++DG D+R + R+H ALV
Sbjct: 1002 SIDIEDGKSTAIVGPSGSGKSTIISLIERFYDPLKGIVKIDGRDIRSCHLRSLRQHIALV 1061
Query: 1074 SQEPVIYAGNIRDNIVFG----KLDASENEVVEAARAANAHEFISSLKDGYETECGERGV 1129
SQEP ++AG IR+NI++G K+D E+E++EAA+AANAH+FI+SL +GY+T CG+RGV
Sbjct: 1062 SQEPTLFAGTIRENIMYGGASNKID--ESEIIEAAKAANAHDFITSLSNGYDTCCGDRGV 1119
Query: 1130 QLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRL 1189
QLSGGQ+QRIAIARA+++NP++LLLDEATSALD QSE VVQ+AL+R+M+GRT++V+AHRL
Sbjct: 1120 QLSGGQKQRIAIARAVLKNPSVLLLDEATSALDSQSESVVQDALERLMVGRTSVVIAHRL 1179
Query: 1190 NTIKKLDSIALVADGRVVERGTYAQLTHM--RGAFFNLATLQ 1229
+TI+K D+IA++ +G VVE G ++ L +GA+F+L +LQ
Sbjct: 1180 STIQKCDTIAVLENGAVVECGNHSSLLAKGPKGAYFSLVSLQ 1221
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSJ6|AB17B_ARATH ABC transporter B family member 17 OS=Arabidopsis thaliana GN=ABCB17 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1278 bits (3307), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 629/1243 (50%), Positives = 890/1243 (71%), Gaps = 33/1243 (2%)
Query: 3 REKNKN--NIGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQS 60
R+K K+ +I IF AD D +LM LG +GA+GDG T ++ + ++N+LG T S
Sbjct: 11 RDKMKSFGSIRSIFMHADGVDWILMALGLIGAVGDGFITPVVVFIFNTLLNNLG---TSS 67
Query: 61 QQNHHENFLDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQE 120
N + F+ + K + +Y+ V+ FLEGYCW++T ERQ ++R KYL AVLRQ+
Sbjct: 68 SNN--KTFMQTISKNVVALLYVACGSWVICFLEGYCWTRTGERQAARMREKYLRAVLRQD 125
Query: 121 VGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSL 180
VG+FD T+TS+VI SIS D+ +IQ+ LSEK+P F+MNAS F++ S WRL++
Sbjct: 126 VGYFDLH-VTSTSDVITSISSDSLVIQDFLSEKLPNFLMNASAFVASYIVSFILMWRLTI 184
Query: 181 VAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDR 240
V FP ++LL++PG++YG+ L+ +S+K +++Y +A +I EQA+SS++TVY+F +E ++I +
Sbjct: 185 VGFPFIILLLVPGLMYGRALVSISRKIHEQYNEAGSIAEQAISSVRTVYAFGSENKMIGK 244
Query: 241 YEAILDSTTKLGIKQGTAKGLAVGSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGIS 300
+ L + KLG++QG AKG+ +GS G++ AIWAFL WYGS LVM G GG ++
Sbjct: 245 FSTALRGSVKLGLRQGLAKGITIGSNGVTHAIWAFLTWYGSRLVMNHGSKGGTVFVVISC 304
Query: 301 FILSGLSLGSALPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHV 360
G+SLG +L LKYF+EA +A RI + I RVP+ID +G +L+ ++GE+EF HV
Sbjct: 305 ITYGGVSLGQSLSNLKYFSEAFVAWERILEVIKRVPDIDSNKKEGQILERMKGEVEFNHV 364
Query: 361 KFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVD 420
KF+Y SRP++ + D LK+ AGK+VALVG SGSGKST I+L+QRFYD G + IDGV
Sbjct: 365 KFTYLSRPETTIFDDLCLKIPAGKTVALVGGSGSGKSTVISLLQRFYDPIAGEILIDGVS 424
Query: 421 IRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLP 480
I +LQ+ W+R +MGLVSQE LF TSI +NI+FGK DA++DEV+ AA A+NAH FI Q P
Sbjct: 425 IDKLQVNWLRSQMGLVSQEPVLFATSITENILFGKEDASLDEVVEAAKASNAHTFISQFP 484
Query: 481 EGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS 540
GY+T+VGERG +SGGQKQRIAIARAIIK+P ILLLDEATSALDSESE +VQ +LD AS
Sbjct: 485 LGYKTQVGERGVQMSGGQKQRIAIARAIIKSPKILLLDEATSALDSESERVVQESLDNAS 544
Query: 541 LGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQR----QF 596
+GRTT+V+AH+LST+RNAD+I V+ NG +VE G+H +L+ RIDG Y + LQ+ +
Sbjct: 545 IGRTTIVIAHRLSTIRNADVICVIHNGQIVETGSHEELLKRIDGQYTSLVSLQQMENEES 604
Query: 597 SCDDQETIPETHVSSVTR----SSGGRLSAARSSPAIFASPLPVIDSPQPVTYLPPSFFR 652
+ + ++ + V S+++ S + + SS S L + + QP L PSF R
Sbjct: 605 NVNINVSVTKDQVMSLSKDFKYSQHNSIGSTSSSIVTNVSDL-IPNDNQP---LVPSFTR 660
Query: 653 LLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFC 712
L+ +N PEWK L G LSA VG +QP A + G +IS FF SH +++ + R Y L+F
Sbjct: 661 LMVMNRPEWKHALYGCLSAALVGVLQPVSAYSAGSVISVFFLTSHDQIKEKTRIYVLLFV 720
Query: 713 SLSLISLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSN 772
L++ S N+ QHY FAYMG LTKRIR +ML KILTFE WFD + NSSGA+CSRL+
Sbjct: 721 GLAIFSFLVNISQHYGFAYMGEYLTKRIREQMLSKILTFEVNWFDIDDNSSGAICSRLAK 780
Query: 773 EASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLS 832
+A++V+S+V DR+SLLVQT SAV IA I+GLV+AW+LA+VMI+VQPL ++CFYT++VLL
Sbjct: 781 DANVVRSMVGDRMSLLVQTISAVIIACIIGLVIAWRLAIVMISVQPLIVVCFYTQRVLLK 840
Query: 833 SVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGI 892
S+S KAQ+ S+++A EAV N R +T+F S +++++ + QE PR+++ +SWLAGI
Sbjct: 841 SLSEKASKAQDESSKLAAEAVSNIRTITAFSSQERIIKLLKKVQEGPRRESVHRSWLAGI 900
Query: 893 GMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAK 952
+G+++ L + AL+FWYGG L+ G+I + F+ F I V+TG+VIA+AG+MT+DLA+
Sbjct: 901 VLGTSRSLITCTSALNFWYGGRLIADGKIVSKAFFEIFLIFVTTGRVIADAGTMTTDLAR 960
Query: 953 GSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQ 1012
G AV SVF +LDR + I + G +KI G+I VDFAYP+RPD ++
Sbjct: 961 GLDAVGSVFAVLDRCTTIEPKN-----PDGYVAEKIKGQITFLNVDFAYPTRPDVVIFEN 1015
Query: 1013 FSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTAL 1072
FS+E+ G S +VG SG GKST+IGLI+RFYD +G+V++DG D+R + RK+ +L
Sbjct: 1016 FSIEIDEGKSTAIVGTSGSGKSTIIGLIERFYDPLKGTVKIDGRDIRSYHLRSLRKYISL 1075
Query: 1073 VSQEPVIYAGNIRDNIVFG----KLDASENEVVEAARAANAHEFISSLKDGYETECGERG 1128
VSQEP+++AG IR+NI++G K+D E+E++EAA+AANAH+FI+SL +GY+T CG++G
Sbjct: 1076 VSQEPMLFAGTIRENIMYGGTSDKID--ESEIIEAAKAANAHDFITSLSNGYDTNCGDKG 1133
Query: 1129 VQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHR 1188
VQLSGGQ+QRIAIARA+++NP++LLLDEATSALD +SE+VVQ+AL+R+M+GRT+I++AHR
Sbjct: 1134 VQLSGGQKQRIAIARAVLKNPSVLLLDEATSALDSKSERVVQDALERVMVGRTSIMIAHR 1193
Query: 1189 LNTIKKLDSIALVADGRVVERGTYAQLTHM--RGAFFNLATLQ 1229
L+TI+ D I ++ G++VE GT++ L G +F+LA +Q
Sbjct: 1194 LSTIQNCDMIVVLGKGKIVESGTHSSLLEKGPTGTYFSLAGIQ 1236
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSJ8|AB16B_ARATH ABC transporter B family member 16 OS=Arabidopsis thaliana GN=ABCB16 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1268 bits (3281), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 622/1228 (50%), Positives = 875/1228 (71%), Gaps = 26/1228 (2%)
Query: 13 IFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEV 72
IF AD D +LM LG +GA+GDG T L + ++N G S + E F+ +
Sbjct: 10 IFMHADGVDWMLMGLGLIGAVGDGFITPILFFITAMLLNDFG-----SFSFNDETFMQPI 64
Query: 73 EKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTT 132
K +L +Y+ A V+ FLEGYCW++T ERQ K+R +YL AVLRQ+VG+FD T+T
Sbjct: 65 SKNALAMLYVACASWVICFLEGYCWTRTGERQAAKMRERYLRAVLRQDVGYFDLH-VTST 123
Query: 133 SEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLIIP 192
S++I S+S D+ +IQ+ LSEK+P +MNAS F+ WRL++V FP ++LL+IP
Sbjct: 124 SDIITSVSSDSLVIQDFLSEKLPNILMNASAFVGSYIVGFMLLWRLTIVGFPFIILLLIP 183
Query: 193 GMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLG 252
G++YG+ LI +S+K +EY +A +I EQA+SS++TVY+F +E+++I+++ L + KLG
Sbjct: 184 GLMYGRALIGISRKIREEYNEAGSIAEQAISSVRTVYAFVSEKKMIEKFSDALQGSVKLG 243
Query: 253 IKQGTAKGLAVGSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSAL 312
++QG AKG+A+GS G+ +AIW FL WYGS +VM G GG + + G +LG AL
Sbjct: 244 LRQGLAKGIAIGSNGIVYAIWGFLTWYGSRMVMNYGYKGGTVSTVTVCVTFGGTALGQAL 303
Query: 313 PELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIV 372
LKYF+EA +A RI I RVP+ID ++ G +L+ +RGE+EF +VK YPSRP++++
Sbjct: 304 SNLKYFSEAFVAGERIQKMIKRVPDIDSDNLNGHILETIRGEVEFNNVKCKYPSRPETLI 363
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRRE 432
D LK+ +GK+VALVG SGSGKST I+L+QRFYD ++G + ID V I +Q+KW+R +
Sbjct: 364 FDDLCLKIPSGKTVALVGGSGSGKSTVISLLQRFYDPNEGDILIDSVSINNMQVKWLRSQ 423
Query: 433 MGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGA 492
MG+VSQE +LF TSIK+NI+FGK DA+ DEV+ AA A+NAHNFI Q P GY+T+VGERG
Sbjct: 424 MGMVSQEPSLFATSIKENILFGKEDASFDEVVEAAKASNAHNFISQFPHGYQTQVGERGV 483
Query: 493 LLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKL 552
+SGGQKQRIAIARA+IK+P+ILLLDEATSALD ESE +VQ ALD AS+GRTT+V+AH+L
Sbjct: 484 HMSGGQKQRIAIARALIKSPIILLLDEATSALDLESERVVQEALDNASVGRTTIVIAHRL 543
Query: 553 STVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQR---QFSCDDQET-IPETH 608
ST+RNAD+I V+ NGC+VE G+H+ L+ IDG Y + +LQ+ + SCD+ + E
Sbjct: 544 STIRNADIICVLHNGCIVETGSHDKLM-EIDGKYTSLVRLQQMKNEESCDNTSVGVKEGR 602
Query: 609 VSSVTR--SSGGRLSAARSSPAIFASPLPVIDS-PQPVTYLPPSFFRLLSLNAPEWKQGL 665
VSS+ R A S +I + + DS PQ L PSF RL+++N PEWK L
Sbjct: 603 VSSLRNDLDYNPRDLAHSMSSSIVTN---LSDSIPQDKKPLVPSFKRLMAMNRPEWKHAL 659
Query: 666 IGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQ 725
G LSA G+VQP YA + G MIS FF +H +++ R Y L+F L+L + ++ Q
Sbjct: 660 CGCLSASLGGAVQPIYAYSSGLMISVFFLTNHEQIKENTRIYVLLFFGLALFTFFTSISQ 719
Query: 726 HYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRV 785
Y+F+YMG LTKRIR +ML KILTFE WFDEE+NSSGA+CSRL+ +A++V+SLV +R+
Sbjct: 720 QYSFSYMGEYLTKRIREQMLSKILTFEVNWFDEEENSSGAICSRLAKDANVVRSLVGERM 779
Query: 786 SLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRS 845
SLLVQT S V +A +GLV+AW+ +VMI+VQP+ I+C+Y ++VLL ++S + AQ+ S
Sbjct: 780 SLLVQTISTVMVACTIGLVIAWRFTIVMISVQPVIIVCYYIQRVLLKNMSKKAIIAQDES 839
Query: 846 TQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMSW 905
+++A EAV N R +T+F S +++++ + QE PR+++ ++SWLAGI +G+ Q L +
Sbjct: 840 SKLAAEAVSNIRTITTFSSQERIMKLLERVQEGPRRESARQSWLAGIMLGTTQSLITCTS 899
Query: 906 ALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILD 965
AL+FWYGG L+ G++ + F+ F I +TG+ IAEAG+MT+DLAKGS +V SVF +LD
Sbjct: 900 ALNFWYGGKLIADGKMVSKAFFELFLIFKTTGRAIAEAGTMTTDLAKGSNSVDSVFTVLD 959
Query: 966 RQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGL 1025
R++ I + G L+KI G+I VDFAYP+RP+ ++ FS+E+ G S +
Sbjct: 960 RRTTIE-----PENPDGYILEKIKGQITFLNVDFAYPTRPNMVIFNNFSIEIHEGKSTAI 1014
Query: 1026 VGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIR 1085
VG S GKSTVIGLI+RFYD QG V++DG D+R + R+H +LVSQEP ++AG IR
Sbjct: 1015 VGPSRSGKSTVIGLIERFYDPLQGIVKIDGRDIRSYHLRSLRQHMSLVSQEPTLFAGTIR 1074
Query: 1086 DNIVFGKLDA--SENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIAR 1143
+NI++G+ E+E++EA + ANAHEFI+SL DGY+T CG+RGVQLSGGQ+QRIAIAR
Sbjct: 1075 ENIMYGRASNKIDESEIIEAGKTANAHEFITSLSDGYDTYCGDRGVQLSGGQKQRIAIAR 1134
Query: 1144 AIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVAD 1203
I++NP+ILLLDEATSALD QSE+VVQ+AL+ +M+G+T++V+AHRL+TI+ D+IA++
Sbjct: 1135 TILKNPSILLLDEATSALDSQSERVVQDALEHVMVGKTSVVIAHRLSTIQNCDTIAVLDK 1194
Query: 1204 GRVVERGTYAQLTHM--RGAFFNLATLQ 1229
G+VVE GT+A L G++F+L +LQ
Sbjct: 1195 GKVVESGTHASLLAKGPTGSYFSLVSLQ 1222
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSJ2|AB22B_ARATH ABC transporter B family member 22 OS=Arabidopsis thaliana GN=ABCB22 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 1257 bits (3253), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 610/1243 (49%), Positives = 882/1243 (70%), Gaps = 53/1243 (4%)
Query: 13 IFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLG---FGQTQSQQNHHENFL 69
IF A+ D++LM LG +GA+GDG T + ++N +G FG + F+
Sbjct: 10 IFMHANSVDLVLMGLGLIGAVGDGFITPIIFFITGLLLNDIGDSSFGD--------KTFM 61
Query: 70 DEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDA 129
+ K ++ +Y+ A +V+ F+EGYCW++T ERQ ++R KYL AVLRQ+VG+FD
Sbjct: 62 HAIMKNAVALLYVAGASLVICFVEGYCWTRTGERQASRMREKYLRAVLRQDVGYFDLH-V 120
Query: 130 TTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLL 189
T+TS+VI S+S DT +IQ++LSEK+P F+M+AS F++ WRL++V FP +LL
Sbjct: 121 TSTSDVITSVSSDTLVIQDVLSEKLPNFLMSASAFVASYIVGFIMLWRLTIVGFPFFILL 180
Query: 190 IIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTT 249
+IPG++ G+ LI +S+K +EY +A +I EQA+S ++TVY+F +ER++I ++ A L+ +
Sbjct: 181 LIPGLMCGRALINISRKIREEYNEAGSIAEQAISLVRTVYAFGSERKMISKFSAALEGSV 240
Query: 250 KLGIKQGTAKGLAVGSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLG 309
KLG++QG AKG+A+GS G+++AIW F+ WYGS +VM+ G GG I+A I G SLG
Sbjct: 241 KLGLRQGIAKGIAIGSNGVTYAIWGFMTWYGSRMVMYHGAKGGTIFAVIICITYGGTSLG 300
Query: 310 SALPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPD 369
L LKYF+EA +A RI + I RVP+ID ++ +G VL+ ++GE++F+HVKF Y SRP+
Sbjct: 301 RGLSNLKYFSEAVVAGERIIEVIKRVPDIDSDNPRGQVLENIKGEVQFKHVKFMYSSRPE 360
Query: 370 SIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWV 429
+ + D L++ +GKSVALVG SGSGKST I+L+QRFYD G + IDGV I++LQ+KW+
Sbjct: 361 TPIFDDLCLRIPSGKSVALVGGSGSGKSTVISLLQRFYDPIVGEILIDGVSIKKLQVKWL 420
Query: 430 RREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGE 489
R +MGLVSQE ALF TSI++NI+FGK DA+ DEV+ AA ++NAH+FI Q P GY+T+VGE
Sbjct: 421 RSQMGLVSQEPALFATSIEENILFGKEDASFDEVVEAAKSSNAHDFISQFPLGYKTQVGE 480
Query: 490 RGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVA 549
RG +SGGQKQRI+IARAIIK+P +LLLDEATSALDSESE +VQ ALD A++GRTT+V+A
Sbjct: 481 RGVQMSGGQKQRISIARAIIKSPTLLLLDEATSALDSESERVVQEALDNATIGRTTIVIA 540
Query: 550 HKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQ---------------- 593
H+LST+RN D+I V NG +VE G+H +L+ +DG Y + +LQ
Sbjct: 541 HRLSTIRNVDVICVFKNGQIVETGSHEELMENVDGQYTSLVRLQIMENEESNDNVSVSMR 600
Query: 594 -RQFSCDDQETIPETHVSSVTRSSGGRLSAARSSPAIFASPLPVIDSPQPVTYLPPSFFR 652
QFS +++ + +S +RSS L A S A +P PSF R
Sbjct: 601 EGQFSNFNKDVKYSSRLSIQSRSS---LFATSSIDTNLAGSIPKDKK--------PSFKR 649
Query: 653 LLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFC 712
L+++N PEWK L G LSA+ G++ P YA G M+S +F SH EM+ + R Y L+F
Sbjct: 650 LMAMNKPEWKHALYGCLSAVLYGALHPIYAYASGSMVSVYFLTSHDEMKEKTRIYVLLFV 709
Query: 713 SLSLISLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSN 772
L+++ +++Q Y+FAYMG LTKRIR +L K+LTFE +WFDE++NSSG++CSRL+
Sbjct: 710 GLAVLCFLISIIQQYSFAYMGEYLTKRIRENILSKLLTFEVSWFDEDENSSGSICSRLAK 769
Query: 773 EASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLS 832
+A++V+SLV +RVSLLVQT SAV++A +GL ++WKL++VMIA+QP+ + CFYT++++L
Sbjct: 770 DANVVRSLVGERVSLLVQTISAVSVACTLGLAISWKLSIVMIAIQPVVVGCFYTQRIVLK 829
Query: 833 SVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGI 892
S+S +KAQ+ S+++A EAV N R +T+F S ++L++ QE P+++ ++SWLAGI
Sbjct: 830 SISKKAIKAQDESSKLAAEAVSNIRTITAFSSQERILKLLKMVQEGPQRENIRQSWLAGI 889
Query: 893 GMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAK 952
+ +++ L + AL++WYG L+ G+I++ F+ F + VSTG+VIA+AG+MT DLAK
Sbjct: 890 VLATSRSLMTCTSALNYWYGARLIIDGKITSKAFFELFILFVSTGRVIADAGAMTMDLAK 949
Query: 953 GSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQ 1012
GS AV SVF +LDR + I + G Q I G+I+ VDFAYP+RPD ++ +
Sbjct: 950 GSDAVGSVFAVLDRYTNIE-----PEKPDGFVPQNIKGQIKFVNVDFAYPTRPDVIIFKN 1004
Query: 1013 FSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTAL 1072
FS+++ G S +VG SG GKST+IGLI+RFYD +G V++DG D+R + R+H L
Sbjct: 1005 FSIDIDEGKSTAIVGPSGSGKSTIIGLIERFYDPLKGIVKIDGRDIRSYHLRSLRQHIGL 1064
Query: 1073 VSQEPVIYAGNIRDNIVFG----KLDASENEVVEAARAANAHEFISSLKDGYETECGERG 1128
VSQEP+++AG IR+NI++G K+D E+E++EAA+AANAH+FI +L DGY+T CG+RG
Sbjct: 1065 VSQEPILFAGTIRENIMYGGASDKID--ESEIIEAAKAANAHDFIVTLSDGYDTYCGDRG 1122
Query: 1129 VQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHR 1188
VQLSGGQ+QRIAIARA+++NP++LLLDEATSALD QSE++VQ+AL R+M+GRT++V+AHR
Sbjct: 1123 VQLSGGQKQRIAIARAVLKNPSVLLLDEATSALDNQSERMVQDALGRLMVGRTSVVIAHR 1182
Query: 1189 LNTIKKLDSIALVADGRVVERGTYAQLTHM--RGAFFNLATLQ 1229
L+TI+ D+I ++ G+VVE GT++ L G +F+L +LQ
Sbjct: 1183 LSTIQNCDTITVLDKGKVVECGTHSSLLAKGPTGVYFSLVSLQ 1225
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LJX0|AB19B_ARATH ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 996 bits (2575), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/1234 (43%), Positives = 787/1234 (63%), Gaps = 29/1234 (2%)
Query: 13 IFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEV 72
+F FAD+ D LLM +G++GAI G S + +++N G Q Q HE V
Sbjct: 29 LFSFADKFDYLLMFVGSLGAIVHGSSMPVFFLLFGQMVNGFGKNQMDLHQMVHE-----V 83
Query: 73 EKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTT 132
+ SLYFVYLGL V ++ E CW + ERQV +R KYLEAVL+Q+VGFFD+ DA T
Sbjct: 84 SRYSLYFVYLGLVVCFSSYAEIACWMYSGERQVAALRKKYLEAVLKQDVGFFDT-DART- 141
Query: 133 SEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLIIP 192
+++ S+S DT L+Q+ +SEKV F+ S F++GL +W+L+L++ + +
Sbjct: 142 GDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWKLALLSVAVIPGIAFA 201
Query: 193 GMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLG 252
G +Y L ++ K+ + Y A I EQA++ ++TVYS+ E + ++ Y + T KLG
Sbjct: 202 GGLYAYTLTGITSKSRESYANAGVIAEQAIAQVRTVYSYVGESKALNAYSDAIQYTLKLG 261
Query: 253 IKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSA 311
K G AKGL +G T G++ WA + WY + GGK + A S I+ G+SLG +
Sbjct: 262 YKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQS 321
Query: 312 LPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSI 371
L F++ A ++ + I++ P I + G LD+V G IEF+ V FSYPSRPD +
Sbjct: 322 FSNLGAFSKGKAAGYKLMEIINQRPTIIQDPLDGKCLDQVHGNIEFKDVTFSYPSRPDVM 381
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRR 431
+ ++FN+ +GK+VA+VG SGSGKST ++L++RFYD + G + +DGV+I+ LQLK++R
Sbjct: 382 IFRNFNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPNSGQILLDGVEIKTLQLKFLRE 441
Query: 432 EMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERG 491
++GLV+QE ALF T+I +NI++GK DATM EV AAA+AANAH+FI LP+GY+T+VGERG
Sbjct: 442 QIGLVNQEPALFATTILENILYGKPDATMVEVEAAASAANAHSFITLLPKGYDTQVGERG 501
Query: 492 ALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHK 551
LSGGQKQRIAIARA++K+P ILLLDEATSALD+ SE++VQ ALD+ +GRTT+VVAH+
Sbjct: 502 VQLSGGQKQRIAIARAMLKDPKILLLDEATSALDASSESIVQEALDRVMVGRTTVVVAHR 561
Query: 552 LSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQ-----RQFSCDDQETIPE 606
L T+RN D IAV+ G +VE GTH +LI + G YA + + Q R FS
Sbjct: 562 LCTIRNVDSIAVIQQGQVVETGTHEELIAK-SGAYASLIRFQEMVGTRDFSNPSTRRTRS 620
Query: 607 THVS------SVTRSSGGRLSAARSSPAIFASPLPVIDSPQP--VTYLPPS-FFRLLSLN 657
T +S S++ SG + + S + +I + + T P + F+RLL LN
Sbjct: 621 TRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMISNAETDRKTRAPENYFYRLLKLN 680
Query: 658 APEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLI 717
+PEW ++G++ +I G + PT+A+ + MI F+ + M+ + + Y I+ L
Sbjct: 681 SPEWPYSIMGAVGSILSGFIGPTFAIVMSNMIEVFYYTDYDSMERKTKEYVFIYIGAGLY 740
Query: 718 SLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMV 777
++ L+QHY F+ MG LT R+R ML IL E WFDE++++S + +RL+ +A+ V
Sbjct: 741 AVGAYLIQHYFFSIMGENLTTRVRRMMLSAILRNEVGWFDEDEHNSSLIAARLATDAADV 800
Query: 778 KSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTN 837
KS +A+R+S+++Q +++ + I+ +V W+++++++ PL +L + +++ L + +
Sbjct: 801 KSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILGTFPLLVLANFAQQLSLKGFAGD 860
Query: 838 FVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSA 897
KA +++ IA E V N R V +F + K+L +F P+K++ +S +G G +
Sbjct: 861 TAKAHAKTSMIAGEGVSNIRTVAAFNAQSKILSLFCHELRVPQKRSLYRSQTSGFLFGLS 920
Query: 898 QCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAV 957
Q + S AL WYG LV KG + V K F +LV T +AE S+ ++ +G AV
Sbjct: 921 QLALYGSEALILWYGAHLVSKGVSTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAV 980
Query: 958 ASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEV 1017
SVF +LDRQ+ I ++ I G IE R VDFAYPSRPD +V R F++ +
Sbjct: 981 GSVFSVLDRQTRIDPDDAD-----ADPVETIRGDIEFRHVDFAYPSRPDVMVFRDFNLRI 1035
Query: 1018 KPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEP 1077
+ G S LVG SG GKS+VI +I+RFYD G V +DG D+R L++ R LV QEP
Sbjct: 1036 RAGHSQALVGASGSGKSSVIAMIERFYDPLAGKVMIDGKDIRRLNLKSLRLKIGLVQQEP 1095
Query: 1078 VIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQ 1137
++A I DNI +GK A+E+EV++AARAANAH FIS L +GY+T GERGVQLSGGQ+Q
Sbjct: 1096 ALFAATIFDNIAYGKDGATESEVIDAARAANAHGFISGLPEGYKTPVGERGVQLSGGQKQ 1155
Query: 1138 RIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDS 1197
RIAIARA+++NPT+LLLDEATSALD +SE V+QEAL+R+M GRTT+VVAHRL+TI+ +D
Sbjct: 1156 RIAIARAVLKNPTVLLLDEATSALDAESECVLQEALERLMRGRTTVVVAHRLSTIRGVDC 1215
Query: 1198 IALVADGRVVERGTYAQL-THMRGAFFNLATLQS 1230
I ++ DGR+VE+G++++L + GA+ L LQ+
Sbjct: 1216 IGVIQDGRIVEQGSHSELVSRPEGAYSRLLQLQT 1249
|
Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates in auxin efflux and thus regulates the polar auxin basipetal transport (from auxin-producing leaves to auxin-sensitive tissues, and from root tips to root elongating zone). Involved in divers auxin-mediated responses including gravitropism, phototropism and lateral root formation. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LPK2|AB2B_ARATH ABC transporter B family member 2 OS=Arabidopsis thaliana GN=ABCB2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 982 bits (2538), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 527/1219 (43%), Positives = 757/1219 (62%), Gaps = 17/1219 (1%)
Query: 13 IFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEV 72
+F FAD D +LM LG+VGA G S +F +++N +G +Q H V
Sbjct: 65 LFSFADFYDCVLMTLGSVGACIHGASVPIFFIFFGKLINIIGLAYLFPKQASHR-----V 119
Query: 73 EKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTT 132
K SL FVYL +A++ ++LE CW T ERQ K+R YL ++L Q++ FD++ +T
Sbjct: 120 AKYSLDFVYLSVAILFSSWLEVACWMHTGERQAAKMRRAYLRSMLSQDISLFDTE--AST 177
Query: 133 SEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLIIP 192
EVI++I+ D ++Q+ LSEKV F+ S FI+G A W++SLV + L+ +
Sbjct: 178 GEVISAITSDILVVQDALSEKVGNFLHYISRFIAGFAIGFTSVWQISLVTLSIVPLIALA 237
Query: 193 GMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLG 252
G IY I L + K Y KA I E+ + +++TV +F+ E R + Y L++T K G
Sbjct: 238 GGIYAFVAIGLIARVRKSYIKAGEIAEEVIGNVRTVQAFTGEERAVRLYREALENTYKYG 297
Query: 253 IKQGTAKGLAVGSTG-LSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSA 311
K G KGL +GS + F WA L W+ S +V GGK + ++ +++GLSLG A
Sbjct: 298 RKAGLTKGLGLGSMHCVLFLSWALLVWFTSVVVHKDIADGGKSFTTMLNVVIAGLSLGQA 357
Query: 312 LPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSI 371
P++ F A AA IF I+R G L +V G I+F+ FSYPSRPD +
Sbjct: 358 APDISAFVRAKAAAYPIFKMIERNTVTKTSAKSGRKLGKVDGHIQFKDATFSYPSRPDVV 417
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRR 431
+ NL + AGK VALVG SGSGKST I+L++RFY+ G V +DG +I L +KW+R
Sbjct: 418 IFDRLNLAIPAGKIVALVGGSGSGKSTVISLIERFYEPISGAVLLDGNNISELDIKWLRG 477
Query: 432 EMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERG 491
++GLV+QE ALF T+I++NI++GK DAT +E+ AA + A +FI LPEG+ET+VGERG
Sbjct: 478 QIGLVNQEPALFATTIRENILYGKDDATAEEITRAAKLSEAISFINNLPEGFETQVGERG 537
Query: 492 ALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHK 551
LSGGQKQRIAI+RAI+KNP ILLLDEATSALD+ESE VQ ALD+ +GRTT+VVAH+
Sbjct: 538 IQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHR 597
Query: 552 LSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQFSCDDQETIPETHVSS 611
LSTVRNAD+IAVV G +VE G H +LI+ DG Y+ + +LQ S ++ T
Sbjct: 598 LSTVRNADIIAVVHEGKIVEFGNHENLISNPDGAYSSLLRLQETASLQRNPSLNRTLSRP 657
Query: 612 VTRSSGGRLSAARSSPAIFASPLPVIDSPQPVTYLPPSFFRLLSLNAPEWKQGLIGSLSA 671
+ LS RSS + D P + + RL S+ P+W G+ G++ A
Sbjct: 658 HSIKYSRELSRTRSSFCSERESVTRPDGADPSKKVKVTVGRLYSMIRPDWMYGVCGTICA 717
Query: 672 IAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNFAY 731
GS P +AL + + ++++ E Q I+ +++FC S+I+L ++H F
Sbjct: 718 FIAGSQMPLFALGVSQALVSYYS-GWDETQKEIKKIAILFCCASVITLIVYTIEHICFGT 776
Query: 732 MGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQT 791
MG RLT R+R M IL E WFDE N+S L SRL ++A+++K++V DR ++L+Q
Sbjct: 777 MGERLTLRVRENMFRAILKNEIGWFDEVDNTSSMLASRLESDATLLKTIVVDRSTILLQN 836
Query: 792 TSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVE 851
V + I+ ++ W+L +V++A PL I + K+ + + KA ++ +A E
Sbjct: 837 LGLVVTSFIIAFILNWRLTLVVLATYPLVISGHISEKLFMQGYGGDLNKAYLKANMLAGE 896
Query: 852 AVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMSWALDFWY 911
+V N R V +F + K+L+++ EP K + ++ +AG+ G +Q F S+ L WY
Sbjct: 897 SVSNIRTVAAFCAEEKILELYSRELLEPSKSSFRRGQIAGLFYGVSQFFIFSSYGLALWY 956
Query: 912 GGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIP 971
G TL+ KG V KTF +L+ T + E ++ DL KG+ VASVF+ILDR++ I
Sbjct: 957 GSTLMDKGLAGFKSVMKTFMVLIVTALAMGETLALAPDLLKGNQMVASVFEILDRKTQIV 1016
Query: 972 GSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGC 1031
G + +L + G IE++ V F+YPSRPD ++ R F + V+ G S+ LVG+SG
Sbjct: 1017 GETS-------EELNNVEGTIELKGVHFSYPSRPDVVIFRDFDLIVRAGKSMALVGQSGS 1069
Query: 1032 GKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFG 1091
GKS+VI LI RFYD G V ++G D+++LD+ RKH LV QEP ++A I +NI++G
Sbjct: 1070 GKSSVISLILRFYDPTAGKVMIEGKDIKKLDLKALRKHIGLVQQEPALFATTIYENILYG 1129
Query: 1092 KLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTI 1151
AS++EVVE+A ANAH FI+SL +GY T+ GERGVQ+SGGQRQRIAIARAI++NP I
Sbjct: 1130 NEGASQSEVVESAMLANAHSFITSLPEGYSTKVGERGVQMSGGQRQRIAIARAILKNPAI 1189
Query: 1152 LLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGT 1211
LLLDEATSALDV+SE+VVQ+ALDR+M RTT+VVAHRL+TIK D+I+++ G++VE+G+
Sbjct: 1190 LLLDEATSALDVESERVVQQALDRLMANRTTVVVAHRLSTIKNADTISVLHGGKIVEQGS 1249
Query: 1212 YAQLT-HMRGAFFNLATLQ 1229
+ +L + G +F L +LQ
Sbjct: 1250 HRKLVLNKSGPYFKLISLQ 1268
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SGY1|AB10B_ARATH ABC transporter B family member 10 OS=Arabidopsis thaliana GN=ABCB10 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 978 bits (2527), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/1233 (42%), Positives = 775/1233 (62%), Gaps = 33/1233 (2%)
Query: 2 RREKNKNNIGII--FRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQ 59
+EK + ++ + F FAD D +LM LG++GA G S +F +++N +G
Sbjct: 16 EKEKKRPSVSFLKLFSFADFYDCVLMALGSIGACIHGASVPVFFIFFGKLINIIGLAYLF 75
Query: 60 SQQNHHENFLDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQ 119
Q+ H+ V K SL FVYL + ++ ++LE CW T ERQ KIR YL ++L Q
Sbjct: 76 PQEASHK-----VAKYSLDFVYLSVVILFSSWLEVACWMHTGERQAAKIRKAYLRSMLSQ 130
Query: 120 EVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLS 179
++ FD++ +T EVI++I+ + ++Q+ +SEKV F+ S FI+G A W++S
Sbjct: 131 DISLFDTE--ISTGEVISAITSEILVVQDAISEKVGNFMHFISRFIAGFAIGFASVWQIS 188
Query: 180 LVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIID 239
LV + + + G IY L + K Y KAN I E+ + +++TV +F+ E + +
Sbjct: 189 LVTLSIVPFIALAGGIYAFVSSGLIVRVRKSYVKANEIAEEVIGNVRTVQAFTGEEKAVS 248
Query: 240 RYEAILDSTTKLGIKQGTAKGLAVGSTGLS-FAIWAFLAWYGSHLVMFKG-ETGGKIYAA 297
Y+ L +T G K G AKGL +GS F WA L W+ S +V+ KG GG+ +
Sbjct: 249 SYQGALRNTYNYGRKAGLAKGLGLGSLHFVLFLSWALLIWFTS-IVVHKGIANGGESFTT 307
Query: 298 GISFILSGLSLGSALPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEF 357
++ +++GLSLG A P++ F AS AA IF I+R + ED G L V G+I F
Sbjct: 308 MLNVVIAGLSLGQAAPDISTFMRASAAAYPIFQMIER----NTEDKTGRKLGNVNGDILF 363
Query: 358 EHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRID 417
+ V F+YPSRPD ++ N + AGK VALVG SGSGKST I+L++RFY+ DG V +D
Sbjct: 364 KDVTFTYPSRPDVVIFDKLNFVIPAGKVVALVGGSGSGKSTMISLIERFYEPTDGAVMLD 423
Query: 418 GVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIR 477
G DIR L LKW+R +GLV+QE LF T+I++NIM+GK DAT +E+ AA + A +FI
Sbjct: 424 GNDIRYLDLKWLRGHIGLVNQEPVLFATTIRENIMYGKDDATSEEITNAAKLSEAISFIN 483
Query: 478 QLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALD 537
LPEG+ET+VGERG LSGGQKQRI+I+RAI+KNP ILLLDEATSALD+ESE +VQ ALD
Sbjct: 484 NLPEGFETQVGERGIQLSGGQKQRISISRAIVKNPSILLLDEATSALDAESEKIVQEALD 543
Query: 538 QASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQFS 597
+ +GRTT+VVAH+LSTVRNAD+IAVV G ++E G+H++LI+ DG Y+ + ++Q S
Sbjct: 544 RVMVGRTTVVVAHRLSTVRNADIIAVVGGGKIIESGSHDELISNPDGAYSSLLRIQEAAS 603
Query: 598 CDDQETIPETHVSSVTRSSGGRLSAARSSPAIFASPLPVIDSPQPVTYLPPSFFRLLSLN 657
+ T P VS+ L ++ +I S ++ P + RL S+
Sbjct: 604 PNLNHT-PSLPVSTKPLP---ELPITETTSSIHQS----VNQPDTTKQAKVTVGRLYSMI 655
Query: 658 APEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLI 717
P+WK GL G+L + GS P +AL I + +++ + Q+ ++ S++FC S+I
Sbjct: 656 RPDWKYGLCGTLGSFIAGSQMPLFALGIAQALVSYYMDWET-TQNEVKRISILFCCGSVI 714
Query: 718 SLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMV 777
++ + ++H F MG RLT R+R +M IL E WFD+ N+S L SRL ++A+++
Sbjct: 715 TVIVHTIEHTTFGIMGERLTLRVRQKMFSAILRNEIGWFDKVDNTSSMLASRLESDATLL 774
Query: 778 KSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTN 837
+++V DR ++L++ V A I+ ++ W+L +V++A PL I + K+ + N
Sbjct: 775 RTIVVDRSTILLENLGLVVTAFIISFILNWRLTLVVLATYPLIISGHISEKIFMQGYGGN 834
Query: 838 FVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSA 897
KA ++ +A E++ N R V +F + KVL ++ + EP +++ ++ +AGI G +
Sbjct: 835 LSKAYLKANMLAGESISNIRTVVAFCAEEKVLDLYSKELLEPSERSFRRGQMAGILYGVS 894
Query: 898 QCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAV 957
Q F S+ L WYG L++KG S V KTF +L+ T V+ E ++ DL KG+ V
Sbjct: 895 QFFIFSSYGLALWYGSILMEKGLSSFESVMKTFMVLIVTALVMGEVLALAPDLLKGNQMV 954
Query: 958 ASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEV 1017
SVF++LDR++ + G + G +L + G IE++ V F+YPSRPD + F++ V
Sbjct: 955 VSVFELLDRRTQVVGDT-------GEELSNVEGTIELKGVHFSYPSRPDVTIFSDFNLLV 1007
Query: 1018 KPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEP 1077
G S+ LVG+SG GKS+V+ L+ RFYD G + +DG D+++L + R+H LV QEP
Sbjct: 1008 PSGKSMALVGQSGSGKSSVLSLVLRFYDPTAGIIMIDGQDIKKLKLKSLRRHIGLVQQEP 1067
Query: 1078 VIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQ 1137
++A I +NI++GK ASE+EV+EAA+ ANAH FISSL +GY T+ GERG+Q+SGGQRQ
Sbjct: 1068 ALFATTIYENILYGKEGASESEVMEAAKLANAHSFISSLPEGYSTKVGERGIQMSGGQRQ 1127
Query: 1138 RIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDS 1197
RIAIARA+++NP ILLLDEATSALDV+SE+VVQ+ALDR+M RTT+VVAHRL+TIK D
Sbjct: 1128 RIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMRDRTTVVVAHRLSTIKNSDM 1187
Query: 1198 IALVADGRVVERGTYAQLTHMR-GAFFNLATLQ 1229
I+++ DG+++E+G++ L + G + L +LQ
Sbjct: 1188 ISVIQDGKIIEQGSHNILVENKNGPYSKLISLQ 1220
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1230 | ||||||
| 255546303 | 1230 | multidrug resistance protein 1, 2, putat | 0.991 | 0.991 | 0.842 | 0.0 | |
| 359484339 | 1238 | PREDICTED: putative ABC transporter B fa | 0.994 | 0.987 | 0.826 | 0.0 | |
| 224143631 | 1205 | multidrug/pheromone exporter, MDR family | 0.979 | 1.0 | 0.829 | 0.0 | |
| 356497591 | 1241 | PREDICTED: putative ABC transporter B fa | 0.989 | 0.980 | 0.802 | 0.0 | |
| 356560631 | 1290 | PREDICTED: putative ABC transporter B fa | 0.988 | 0.942 | 0.797 | 0.0 | |
| 449436042 | 1231 | PREDICTED: putative ABC transporter B fa | 0.978 | 0.977 | 0.778 | 0.0 | |
| 449489907 | 1231 | PREDICTED: LOW QUALITY PROTEIN: putative | 0.978 | 0.977 | 0.778 | 0.0 | |
| 218188981 | 1234 | hypothetical protein OsI_03576 [Oryza sa | 0.984 | 0.981 | 0.701 | 0.0 | |
| 115439661 | 1234 | Os01g0723800 [Oryza sativa Japonica Grou | 0.984 | 0.981 | 0.701 | 0.0 | |
| 414880680 | 1231 | TPA: hypothetical protein ZEAMMB73_97537 | 0.986 | 0.986 | 0.699 | 0.0 |
| >gi|255546303|ref|XP_002514211.1| multidrug resistance protein 1, 2, putative [Ricinus communis] gi|223546667|gb|EEF48165.1| multidrug resistance protein 1, 2, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2117 bits (5485), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1036/1230 (84%), Positives = 1147/1230 (93%), Gaps = 10/1230 (0%)
Query: 1 MRREKNKNNIGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQS 60
+RRE+ K+ + IIFR+AD DILLM++GTVGAIGDGMSTN LLVFAS IMNSLG+G+TQ
Sbjct: 11 IRREEGKS-VAIIFRYADWVDILLMLMGTVGAIGDGMSTNILLVFASHIMNSLGYGKTQQ 69
Query: 61 QQNHHENFLDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQE 120
Q NF+ EVEKCSLYFVYLGLAVMVVAF+EGY WSKTSERQV+KIRYKYLEAVLRQE
Sbjct: 70 NQG---NFMVEVEKCSLYFVYLGLAVMVVAFMEGYSWSKTSERQVLKIRYKYLEAVLRQE 126
Query: 121 VGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSL 180
VGFFDSQ+ATT SE+INSISKDTSLIQE+LSEKVPIF+M+ASVFISGLAF+TYFSWRLSL
Sbjct: 127 VGFFDSQEATT-SEIINSISKDTSLIQEVLSEKVPIFLMHASVFISGLAFATYFSWRLSL 185
Query: 181 VAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDR 240
VA+PTLLLLIIPGMIYGKYL++LSKK+ +EY KAN+IVEQALSSIKTVYSF+AE+ IIDR
Sbjct: 186 VAYPTLLLLIIPGMIYGKYLLFLSKKSQREYSKANSIVEQALSSIKTVYSFTAEKSIIDR 245
Query: 241 YEAILDSTTKLGIKQGTAKGLAVGSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGIS 300
Y AILD T+KLGIKQG AKGLAVGSTGLSFAIWAFLAWYGSHLVM+KGE+GG+IYAAGIS
Sbjct: 246 YSAILDKTSKLGIKQGIAKGLAVGSTGLSFAIWAFLAWYGSHLVMYKGESGGRIYAAGIS 305
Query: 301 FILSGLSLGSALPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHV 360
FIL GLSLG ALP+LKYFTEAS+AA RIF+RIDRVPEIDGEDTKGLVL++++GEIEF+HV
Sbjct: 306 FILGGLSLGMALPDLKYFTEASVAAKRIFNRIDRVPEIDGEDTKGLVLEKMQGEIEFQHV 365
Query: 361 KFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVD 420
+F+YP+RPDSIVLKDFNLK +AGK+VALVGASGSGKSTAIALVQRFYD + G V+IDGVD
Sbjct: 366 RFTYPTRPDSIVLKDFNLKAEAGKTVALVGASGSGKSTAIALVQRFYDVNGGFVKIDGVD 425
Query: 421 IRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLP 480
IR L LKW+R +MGLVSQEHALFG SIKDNIMFGKLDATMD+V AAA AANAHNFIRQLP
Sbjct: 426 IRTLNLKWIRGKMGLVSQEHALFGASIKDNIMFGKLDATMDQVTAAAMAANAHNFIRQLP 485
Query: 481 EGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS 540
EGYET+VGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS
Sbjct: 486 EGYETRVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS 545
Query: 541 LGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQFSCDD 600
+GRTTLVVAHKLST+RNADLIAVV+NGC++EIG+HNDLINR +GHYA +AKLQRQFS +D
Sbjct: 546 MGRTTLVVAHKLSTIRNADLIAVVNNGCIIEIGSHNDLINRKNGHYANLAKLQRQFSYND 605
Query: 601 QETIPETHVSSVTRSSGGRLSAARSSPAIFASPLPVIDSPQPVTYLPPSFFRLLSLNAPE 660
E PETHVSSV +SS GR+S RSSPAIFASPLPV+D P+PV + PPSF RLLSLN+PE
Sbjct: 606 HEQNPETHVSSVGKSSAGRISTGRSSPAIFASPLPVVDIPKPVCHPPPSFSRLLSLNSPE 665
Query: 661 WKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLA 720
WKQGL+GSLSAIA G+VQP YALTIGGMI+AFFA SH EM +RIRTYS IFCSLSLIS+
Sbjct: 666 WKQGLMGSLSAIAFGAVQPFYALTIGGMIAAFFAPSHEEMHARIRTYSSIFCSLSLISII 725
Query: 721 FNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSL 780
NL+QHYNFAYMG RLT+RIR+RMLEK+LTFE AWFDEE+NSSGALCSRLSNEASMVKSL
Sbjct: 726 VNLVQHYNFAYMGERLTERIRIRMLEKVLTFETAWFDEEKNSSGALCSRLSNEASMVKSL 785
Query: 781 VADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVK 840
VADRVSLLVQTTSAV IAMIMGLVVAWKLA+VMIAVQPLTILCFYTRKVLLS+++TNFVK
Sbjct: 786 VADRVSLLVQTTSAVTIAMIMGLVVAWKLALVMIAVQPLTILCFYTRKVLLSTITTNFVK 845
Query: 841 AQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCL 900
AQN STQIA EAV NH+IVTSFGS KVLQ+FD+AQEEPRK+ARKKSWLAGIGMGSAQCL
Sbjct: 846 AQNHSTQIAAEAVHNHKIVTSFGSTQKVLQLFDDAQEEPRKEARKKSWLAGIGMGSAQCL 905
Query: 901 TFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASV 960
TFMSWALDFWYGGTLVQK +ISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASV
Sbjct: 906 TFMSWALDFWYGGTLVQKREISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASV 965
Query: 961 FKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPG 1020
F+ILDRQSLIP DG G+KL+K++G+IEM+R+DFAYPSRP+ L+LRQF +EVK G
Sbjct: 966 FQILDRQSLIP-----VDGASGTKLEKLTGRIEMKRIDFAYPSRPETLILRQFCLEVKSG 1020
Query: 1021 TSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIY 1080
TS+GLVGKSGCGKSTVIGLIQRFYDVE+GSV+VDGMD+RELD+ WYR+HTALVSQEPV+Y
Sbjct: 1021 TSIGLVGKSGCGKSTVIGLIQRFYDVERGSVQVDGMDIRELDILWYRRHTALVSQEPVLY 1080
Query: 1081 AGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIA 1140
+G+IRDNIVFGKLDA ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQ+QRIA
Sbjct: 1081 SGSIRDNIVFGKLDAGENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQKQRIA 1140
Query: 1141 IARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIAL 1200
IARAIIRNPTILLLDEATSALDVQSEQVVQEALDR M+GRTT+VVAHRLNTIKKLDSIA
Sbjct: 1141 IARAIIRNPTILLLDEATSALDVQSEQVVQEALDRTMIGRTTVVVAHRLNTIKKLDSIAF 1200
Query: 1201 VADGRVVERGTYAQLTHMRGAFFNLATLQS 1230
VADG+VVE+GTY+QL + RGAFFNLATLQ+
Sbjct: 1201 VADGKVVEQGTYSQLKNKRGAFFNLATLQT 1230
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359484339|ref|XP_002280453.2| PREDICTED: putative ABC transporter B family member 8-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2084 bits (5399), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1016/1230 (82%), Positives = 1140/1230 (92%), Gaps = 7/1230 (0%)
Query: 1 MRREKNKNNIGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQS 60
M R+++K+ I +IFR+AD D++LM LGTVGAIGDGMSTNCLLVF SR+MNSLG+G TQ
Sbjct: 14 MERKESKS-IVVIFRYADWVDLVLMFLGTVGAIGDGMSTNCLLVFVSRLMNSLGYGNTQ- 71
Query: 61 QQNHHENFLDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQE 120
+H NF+DEVEKCSLYFVYL LAVMVVAF+EGYCWS+TSERQV++IRYKYLEAVLRQE
Sbjct: 72 --KNHGNFMDEVEKCSLYFVYLALAVMVVAFMEGYCWSRTSERQVLRIRYKYLEAVLRQE 129
Query: 121 VGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSL 180
VGFFDSQ+ATT SE+INSISKDTSLIQE+LSEKVP F+M+ASVFISGLAF+TYFSWRLSL
Sbjct: 130 VGFFDSQEATT-SEIINSISKDTSLIQEVLSEKVPTFLMHASVFISGLAFATYFSWRLSL 188
Query: 181 VAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDR 240
VAFP LLLLIIPGM+YGKYL+YLSKK +KEYGKAN+IVEQALSSIKTVYSF+AERRI++R
Sbjct: 189 VAFPLLLLLIIPGMVYGKYLLYLSKKCFKEYGKANSIVEQALSSIKTVYSFTAERRIVER 248
Query: 241 YEAILDSTTKLGIKQGTAKGLAVGSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGIS 300
Y AILD TT LGIKQG AKGLAVGSTGLSFAIWAFL+WYGS LVM+KGE+GG+IYAAGIS
Sbjct: 249 YSAILDKTTSLGIKQGIAKGLAVGSTGLSFAIWAFLSWYGSRLVMYKGESGGRIYAAGIS 308
Query: 301 FILSGLSLGSALPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHV 360
FIL GLSLG ALP++KYFTEAS+AA+RIFDRIDR+PEIDGED KGLVLD++ GE+EFEHV
Sbjct: 309 FILGGLSLGMALPDVKYFTEASVAATRIFDRIDRIPEIDGEDDKGLVLDKILGELEFEHV 368
Query: 361 KFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVD 420
F+YPSRPDSIVLKDFNLKV+AGK+VALVGASGSGKSTAIAL+QRFYDAD G++RIDGVD
Sbjct: 369 NFTYPSRPDSIVLKDFNLKVQAGKTVALVGASGSGKSTAIALLQRFYDADHGVIRIDGVD 428
Query: 421 IRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLP 480
IR LQLKW+R +MGLVSQEHALFGTSIK+NI+FGK +ATMDEV+AAA AANAHNFIRQLP
Sbjct: 429 IRTLQLKWIRGKMGLVSQEHALFGTSIKENIIFGKPNATMDEVVAAAMAANAHNFIRQLP 488
Query: 481 EGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS 540
EGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS
Sbjct: 489 EGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS 548
Query: 541 LGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQFSCDD 600
+GRTTLVVAHKL+TVRNADLIAV++ GC++EIG+H+DLIN+ +GHYAK+AK+QRQFSCDD
Sbjct: 549 MGRTTLVVAHKLATVRNADLIAVMNGGCVIEIGSHHDLINKKNGHYAKLAKMQRQFSCDD 608
Query: 601 QETIPETHVSSVTRSSGGRLSAARSSPAIFASPLPVIDSPQP-VTYLPPSFFRLLSLNAP 659
QE ET +SSV RSS GR S A SSPA+FASPLP D+P+P +++ PPSF RLLSLN+P
Sbjct: 609 QEQNSETWISSVARSSAGRPSTATSSPALFASPLP-DDNPKPAISHHPPSFSRLLSLNSP 667
Query: 660 EWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISL 719
EWKQGLIGSLSAIA G+VQP YALTIGGMISAFF SH+E+++R+ TYSLIF SL+LIS+
Sbjct: 668 EWKQGLIGSLSAIAFGAVQPVYALTIGGMISAFFLPSHAEIRARVETYSLIFSSLTLISI 727
Query: 720 AFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKS 779
NL+QHYNFAYMG LTKRIRL ML KILTFEAAWFDEEQNSSG LCSRLSNEAS+VKS
Sbjct: 728 ILNLIQHYNFAYMGAHLTKRIRLSMLNKILTFEAAWFDEEQNSSGVLCSRLSNEASIVKS 787
Query: 780 LVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFV 839
LVADRVSLLVQTTS+V IAM++GL VAWKLA+VMIAVQPLTILCFYTRKVLLS++S N V
Sbjct: 788 LVADRVSLLVQTTSSVTIAMVLGLAVAWKLALVMIAVQPLTILCFYTRKVLLSNISNNVV 847
Query: 840 KAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQC 899
+AQN+STQIAVEAV NHRIVTSFGS GKVLQ+FDEAQEEPRK+A KKSWLAGIGMGSA C
Sbjct: 848 EAQNQSTQIAVEAVYNHRIVTSFGSVGKVLQLFDEAQEEPRKEAMKKSWLAGIGMGSALC 907
Query: 900 LTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVAS 959
LTFMSWALDFWYGG LV+ GQISAGDVFKTFF+LVSTGKVIA+AGSMTSDLAKGSTAVAS
Sbjct: 908 LTFMSWALDFWYGGKLVESGQISAGDVFKTFFVLVSTGKVIADAGSMTSDLAKGSTAVAS 967
Query: 960 VFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKP 1019
VF+ILDRQSLIPGS AGD G+KL+K+SG IE+++VDFAYPSR ++LVLRQF +EVKP
Sbjct: 968 VFEILDRQSLIPGSYNAGDNMAGTKLEKMSGGIEIKKVDFAYPSRKESLVLRQFCLEVKP 1027
Query: 1020 GTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVI 1079
GTS+GLVGKSGCGKSTVIGLIQRFYD ++G+V+VDG+D+RELD+ WYR H ALVSQEPVI
Sbjct: 1028 GTSIGLVGKSGCGKSTVIGLIQRFYDADKGTVKVDGVDIRELDLGWYRMHMALVSQEPVI 1087
Query: 1080 YAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRI 1139
Y+G+IRDNI+FGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQ+QRI
Sbjct: 1088 YSGSIRDNILFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQKQRI 1147
Query: 1140 AIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIA 1199
IARAIIRNP +LLLDEATSALDVQSEQVVQEALDRIM+GRTTIVVAHRLNTIKKLDSIA
Sbjct: 1148 TIARAIIRNPIVLLLDEATSALDVQSEQVVQEALDRIMVGRTTIVVAHRLNTIKKLDSIA 1207
Query: 1200 LVADGRVVERGTYAQLTHMRGAFFNLATLQ 1229
V++G+VVERGTYAQL RGAFFNLA+LQ
Sbjct: 1208 FVSEGKVVERGTYAQLKSKRGAFFNLASLQ 1237
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224143631|ref|XP_002325023.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222866457|gb|EEF03588.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2074 bits (5373), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1013/1221 (82%), Positives = 1124/1221 (92%), Gaps = 16/1221 (1%)
Query: 9 NIGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENF 68
+I IFR+AD DILLM+LGTVGAIGDGMSTNCLLVFASRIMNSLG+GQT+ Q N+ NF
Sbjct: 1 SIANIFRYADWNDILLMLLGTVGAIGDGMSTNCLLVFASRIMNSLGYGQTR-QDNY--NF 57
Query: 69 LDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQD 128
+ EV+K + FVYLGLAVMV+AF+EGYCWSKTSERQV+KIRYKYLEA+LRQEVGF+DSQ+
Sbjct: 58 MVEVQKVN--FVYLGLAVMVMAFMEGYCWSKTSERQVLKIRYKYLEAILRQEVGFYDSQE 115
Query: 129 ATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLL 188
ATT SE+INSIS DTSL+QE+LSEKVPIF+M+ASVF SGLAF+TYFSWRLSLVAFPTLLL
Sbjct: 116 ATT-SEIINSISNDTSLVQEVLSEKVPIFLMHASVFFSGLAFATYFSWRLSLVAFPTLLL 174
Query: 189 LIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDST 248
LIIPGMIYGKYL+YLSKKA EYGKAN+IVE+ALSSIKT+YSF+AE+RIIDRY AILD T
Sbjct: 175 LIIPGMIYGKYLLYLSKKARTEYGKANSIVERALSSIKTIYSFTAEKRIIDRYSAILDRT 234
Query: 249 TKLGIKQGTAKGLAVGSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSL 308
TKLGIKQG AKGLAVGSTGLSFAIWAFLAWYGSHLVM+KGE+GG+IYAAGISFILSGLSL
Sbjct: 235 TKLGIKQGIAKGLAVGSTGLSFAIWAFLAWYGSHLVMYKGESGGRIYAAGISFILSGLSL 294
Query: 309 GSALPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRP 368
G ALP+LKYFTEAS+AA+RIF RIDRVPEID EDTKG VLD+++G+I F++V F+YP RP
Sbjct: 295 GIALPDLKYFTEASVAATRIFKRIDRVPEIDSEDTKGRVLDKIQGQIVFQNVSFTYPCRP 354
Query: 369 DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKW 428
D++VLKDFNLKV+AGK+VALVGASGSGKSTAIAL+QRFYD D GIV+IDGVD+R L LKW
Sbjct: 355 DAVVLKDFNLKVEAGKTVALVGASGSGKSTAIALLQRFYDVDSGIVKIDGVDLRTLNLKW 414
Query: 429 VRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVG 488
+R +MGLVSQ+HALFGTSIK+NIMFGKLDATMDE++AAA AANAHNFIRQLPEGYETKVG
Sbjct: 415 IRGQMGLVSQDHALFGTSIKENIMFGKLDATMDEIMAAAMAANAHNFIRQLPEGYETKVG 474
Query: 489 ERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVV 548
ERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS+GRTTLVV
Sbjct: 475 ERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASMGRTTLVV 534
Query: 549 AHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQFSCDDQETIPETH 608
AHKLSTVRNADLIAVVDNG ++EIG+HNDLIN +GHYAK+AKLQRQFSCD+QE PE
Sbjct: 535 AHKLSTVRNADLIAVVDNGSIIEIGSHNDLINIQNGHYAKLAKLQRQFSCDEQEQNPEIR 594
Query: 609 VSSVTRSSGGRLSAARSSPAIFASPLPVIDSPQPVTYLPPSFFRLLSLNAPEWKQGLIGS 668
SSVT SS R S +SSP IFASPLPV DSP+PV PSF RLLSLNAPEWKQGL+GS
Sbjct: 595 FSSVT-SSAARQSTGKSSPTIFASPLPVDDSPKPVHIPAPSFSRLLSLNAPEWKQGLMGS 653
Query: 669 LSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYN 728
+SAI G+VQP YALT+GGMI+A FA +H E++ RIR YSLIFCSLSL S+ NL+QHYN
Sbjct: 654 ISAITFGAVQPVYALTVGGMIAALFAPNHDEVRDRIRLYSLIFCSLSLFSIIINLVQHYN 713
Query: 729 FAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLL 788
FAYMG RLTKRIRLRMLEKIL FE AWFDEE+NSSGALC RLS EASMVK+L+ADRV LL
Sbjct: 714 FAYMGERLTKRIRLRMLEKILGFETAWFDEEENSSGALCLRLSAEASMVKTLIADRVCLL 773
Query: 789 VQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQI 848
VQTTSAV IAMIMGLVVAWKLA+VMIAVQPLTILCFYT+K+LLSS+STNFVKAQNRSTQI
Sbjct: 774 VQTTSAVTIAMIMGLVVAWKLAIVMIAVQPLTILCFYTKKILLSSISTNFVKAQNRSTQI 833
Query: 849 AVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMSWALD 908
AVEAV NHRIVTSF S GKVLQ+FDEAQEEPRK+ RKKSWLAGIGMGSAQCLTFMSWALD
Sbjct: 834 AVEAVYNHRIVTSFASVGKVLQLFDEAQEEPRKEGRKKSWLAGIGMGSAQCLTFMSWALD 893
Query: 909 FWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQS 968
FW+GGTLV+KG+ISAGDVFKTFFILVSTGKVIAEAGSMTSDL+KGSTAVASVFKILDRQS
Sbjct: 894 FWFGGTLVEKGEISAGDVFKTFFILVSTGKVIAEAGSMTSDLSKGSTAVASVFKILDRQS 953
Query: 969 LIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGK 1028
LIPGS L+K+ GKIEM+++DFAYPSRP+ L+LRQF +EVKPGTSVGLVGK
Sbjct: 954 LIPGSYH---------LEKLGGKIEMKKIDFAYPSRPETLILRQFCLEVKPGTSVGLVGK 1004
Query: 1029 SGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNI 1088
SGCGKSTVIGLIQRFYDVE+GSVRVDG+D+RELD+ W+RK TALVSQEPV+Y+G+IR+NI
Sbjct: 1005 SGCGKSTVIGLIQRFYDVEKGSVRVDGVDIRELDIQWFRKRTALVSQEPVLYSGSIRENI 1064
Query: 1089 VFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRN 1148
+FGKLDASENEVVEAARAANAHEFISSLK+GYETECGERGVQLSGGQ+QRIAIARAI+RN
Sbjct: 1065 MFGKLDASENEVVEAARAANAHEFISSLKEGYETECGERGVQLSGGQKQRIAIARAILRN 1124
Query: 1149 PTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVE 1208
PTILLLDEATSALDVQSEQVVQEALDRIM+ RTTIVVAHRLNTIK LDSIA VADG+VVE
Sbjct: 1125 PTILLLDEATSALDVQSEQVVQEALDRIMVRRTTIVVAHRLNTIKNLDSIAFVADGKVVE 1184
Query: 1209 RGTYAQLTHMRGAFFNLATLQ 1229
RGTYAQL + RGAFF+LA+LQ
Sbjct: 1185 RGTYAQLKNKRGAFFDLASLQ 1205
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497591|ref|XP_003517643.1| PREDICTED: putative ABC transporter B family member 8-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1991 bits (5159), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 985/1228 (80%), Positives = 1106/1228 (90%), Gaps = 11/1228 (0%)
Query: 5 KNKNNIGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQT-QSQQN 63
K + +I I R+AD D++LM++G VGAIGDGMSTN LL+FASRIMNSLG+ QS +
Sbjct: 19 KERASIATILRYADWIDVVLMLMGAVGAIGDGMSTNVLLLFASRIMNSLGYSNNLQSTKT 78
Query: 64 HHENFLDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGF 123
++ EVEKCSLYFVYLGLA MVVAF+EGYCWSKTSERQV+KIRYKYLEAVLRQEVGF
Sbjct: 79 ----YMAEVEKCSLYFVYLGLAAMVVAFMEGYCWSKTSERQVLKIRYKYLEAVLRQEVGF 134
Query: 124 FDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAF 183
FDSQ+ATT SE+INSIS DTSLIQE+LSEKVP+F+M++S FISG+AF+TYFSWRL+LVAF
Sbjct: 135 FDSQEATT-SEIINSISTDTSLIQEVLSEKVPLFLMHSSSFISGVAFATYFSWRLALVAF 193
Query: 184 PTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEA 243
PTLLLLIIPGMIYGKYLIYLSK KEYGKAN+IVEQALSSIKTVYSF+AE+RII RY
Sbjct: 194 PTLLLLIIPGMIYGKYLIYLSKSTVKEYGKANSIVEQALSSIKTVYSFTAEKRIIGRYSD 253
Query: 244 ILDSTTKLGIKQGTAKGLAVGSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFIL 303
IL T++LGIKQG AKG+AVGSTGLSFAIWAFLAWYGS LVM+KGE+GG+IYA+GISFI+
Sbjct: 254 ILCRTSRLGIKQGIAKGIAVGSTGLSFAIWAFLAWYGSRLVMYKGESGGRIYASGISFIM 313
Query: 304 SGLSLGSALPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFS 363
GLSLG LP+LKYFTEAS+AASRIFD IDR P IDGEDTKGLVL+ + G ++FEHVKF+
Sbjct: 314 CGLSLGVVLPDLKYFTEASVAASRIFDMIDRTPLIDGEDTKGLVLESISGRLDFEHVKFT 373
Query: 364 YPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRR 423
YPSRPD +VL DFNL+V+AGK+VALVGASGSGKSTAIALVQRFYDAD+G+VR+DGVDI+
Sbjct: 374 YPSRPDMVVLNDFNLQVEAGKTVALVGASGSGKSTAIALVQRFYDADEGVVRVDGVDIKS 433
Query: 424 LQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGY 483
LQLKW+R +MGLVSQEHA+FGTSIK+NIMFGK DATMDE++AAA+AANAHNFIRQLPEGY
Sbjct: 434 LQLKWIRGKMGLVSQEHAMFGTSIKENIMFGKSDATMDEIVAAASAANAHNFIRQLPEGY 493
Query: 484 ETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGR 543
ETK+GERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESE LVQNALDQAS+GR
Sbjct: 494 ETKIGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESELLVQNALDQASMGR 553
Query: 544 TTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQFSCDDQET 603
TTLVVAHKLST+RNADLIAVV++G ++E GTH++LINR +GHYAK+AKLQ Q S DDQ+
Sbjct: 554 TTLVVAHKLSTIRNADLIAVVNSGHIIETGTHHELINRPNGHYAKLAKLQTQLSMDDQDQ 613
Query: 604 IPETHVSSVTRSSGGRLSAARSSPAIFA-SPLPVID-SPQPVTYLPPSFFRLLSLNAPEW 661
E S RSS GR S ARSSPAIF SPLP +P V++ PPSF RLLSLNAPEW
Sbjct: 614 NQELGALSAARSSAGRPSTARSSPAIFPKSPLPDDQATPSQVSHPPPSFTRLLSLNAPEW 673
Query: 662 KQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAF 721
KQGLIG+LSAIA GSVQP YALTIGGMISAFFA+SH EM+ RIRTYS IFCSLSL S+
Sbjct: 674 KQGLIGTLSAIAFGSVQPLYALTIGGMISAFFAESHQEMRHRIRTYSFIFCSLSLASIIL 733
Query: 722 NLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLV 781
NLLQHYNFAYMG +LTKRIRL MLE ILTFE AWFDEEQNSSGALCSRLSNEASMVKSLV
Sbjct: 734 NLLQHYNFAYMGAKLTKRIRLCMLENILTFETAWFDEEQNSSGALCSRLSNEASMVKSLV 793
Query: 782 ADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKA 841
ADR+SLLVQTTSAV IAMI+GL VAWKLA+VMIAVQPLTILCFYTRKVLLS++ST FVKA
Sbjct: 794 ADRLSLLVQTTSAVIIAMIIGLAVAWKLALVMIAVQPLTILCFYTRKVLLSTLSTKFVKA 853
Query: 842 QNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLT 901
QN+STQIAVEAV NHRIVTSFGS KVL++FDEAQE PRK+ARKKSWLAGIGMGSAQCLT
Sbjct: 854 QNQSTQIAVEAVYNHRIVTSFGSITKVLRLFDEAQEAPRKEARKKSWLAGIGMGSAQCLT 913
Query: 902 FMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVF 961
FMSWALDFWYGGTLV+ +ISAGDVFKTFF+LVSTGKVIA+AGSMTSDLAK STAVASVF
Sbjct: 914 FMSWALDFWYGGTLVENREISAGDVFKTFFVLVSTGKVIADAGSMTSDLAKSSTAVASVF 973
Query: 962 KILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGT 1021
+ILDR+SLIP +AGD T G KL+K+SGKIE++ VDFAYPSR +LR+F +EVKPG
Sbjct: 974 EILDRKSLIP---KAGDNTNGIKLEKMSGKIELKNVDFAYPSRAGTPILRKFCLEVKPGK 1030
Query: 1022 SVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYA 1081
SVGLVG+SGCGKSTVI LIQRFYDVE+GSV+VD +D+RELD+HWYR+H ALVSQEPVIY+
Sbjct: 1031 SVGLVGRSGCGKSTVIALIQRFYDVERGSVKVDNVDIRELDIHWYRQHMALVSQEPVIYS 1090
Query: 1082 GNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAI 1141
G+IRDNI+FGK DA+ENEV+EAARAANAHEFISSLKDGYETECGERGVQLSGGQ+QRIAI
Sbjct: 1091 GSIRDNILFGKQDATENEVIEAARAANAHEFISSLKDGYETECGERGVQLSGGQKQRIAI 1150
Query: 1142 ARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALV 1201
ARAIIRNP ILLLDEATSALDVQSEQVVQEALDR M+GRTTIVVAHRLNTIK+LDSIA V
Sbjct: 1151 ARAIIRNPKILLLDEATSALDVQSEQVVQEALDRTMVGRTTIVVAHRLNTIKELDSIAYV 1210
Query: 1202 ADGRVVERGTYAQLTHMRGAFFNLATLQ 1229
++G+V+E+GTYAQL H RGAFFNLA+ Q
Sbjct: 1211 SEGKVLEQGTYAQLRHKRGAFFNLASHQ 1238
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356560631|ref|XP_003548594.1| PREDICTED: putative ABC transporter B family member 8-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1986 bits (5145), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 980/1229 (79%), Positives = 1108/1229 (90%), Gaps = 13/1229 (1%)
Query: 5 KNKNNIGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQT-QSQQN 63
K + +I I R++D D++LM++G VGAIGDGMSTN LL+FASRIMNSLG+ QS +
Sbjct: 14 KERASIATILRYSDWIDVVLMLMGAVGAIGDGMSTNVLLLFASRIMNSLGYSNNLQSTKT 73
Query: 64 HHENFLDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGF 123
++ EVEKCSLYFVYLGLA MVVAF+EGYCWSKTSERQV++IRYKYLEAVLRQEVGF
Sbjct: 74 ----YMAEVEKCSLYFVYLGLAAMVVAFMEGYCWSKTSERQVLRIRYKYLEAVLRQEVGF 129
Query: 124 FDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAF 183
FD Q+ TTTSE+INSISKDTSLIQE+LSEKVP+F+M++S FISG+AF+TYFSWRL+LVAF
Sbjct: 130 FDLQE-TTTSEIINSISKDTSLIQEVLSEKVPLFLMHSSSFISGVAFATYFSWRLALVAF 188
Query: 184 PTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEA 243
PTLLLLIIPGMIYGKYLIYLSK KEYGKAN+IVEQALSSIKTVYSF+AE+RI+ RY
Sbjct: 189 PTLLLLIIPGMIYGKYLIYLSKSTLKEYGKANSIVEQALSSIKTVYSFTAEKRIMGRYSD 248
Query: 244 ILDSTTKLGIKQGTAKGLAVGSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFIL 303
IL T++LGIKQG AKG+AVGSTGLSFAIWAFLAWYGS LVM+KGE+GG+IYA+GISFI+
Sbjct: 249 ILCKTSRLGIKQGIAKGIAVGSTGLSFAIWAFLAWYGSRLVMYKGESGGRIYASGISFIM 308
Query: 304 SGLSLGSALPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFS 363
GLSLG LP+LKYFTEAS+AASRIFD IDR P IDGEDTKG+VL+ + G ++FEHVKF+
Sbjct: 309 CGLSLGVVLPDLKYFTEASVAASRIFDMIDRTPLIDGEDTKGVVLESISGRLDFEHVKFT 368
Query: 364 YPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRR 423
YPSRPD +VL+DFNL+V+AGK+VALVGASGSGKSTAIALVQRFYDAD+G+VR+DGVDI+
Sbjct: 369 YPSRPDMVVLRDFNLQVEAGKTVALVGASGSGKSTAIALVQRFYDADEGVVRVDGVDIKS 428
Query: 424 LQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGY 483
LQLKW+R +MGLVSQEHA+FGTSIK+NIMFGK DATMDE++AAA+AANAHNFIR+LPEGY
Sbjct: 429 LQLKWMRGKMGLVSQEHAMFGTSIKENIMFGKPDATMDEIVAAASAANAHNFIRELPEGY 488
Query: 484 ETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGR 543
ETK+GERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESE LVQNALDQAS+GR
Sbjct: 489 ETKIGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESELLVQNALDQASMGR 548
Query: 544 TTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQFSCDDQET 603
TTLVVAHKLST+RNADLIAVV GC++E GTHN+LI + +GHYAK+AKLQ Q S DDQ+
Sbjct: 549 TTLVVAHKLSTIRNADLIAVVSGGCIIETGTHNELITKPNGHYAKLAKLQTQLSIDDQDQ 608
Query: 604 IPETHVSSVTRSSGGRLSAARSSPAIFASPLPVID---SPQPVTYLPPSFFRLLSLNAPE 660
PE S TRSS GR S ARSSPAIF P++D +P V++ PPSF RLLSLNAPE
Sbjct: 609 NPELGALSATRSSAGRPSTARSSPAIFPKS-PLLDDQATPSQVSHPPPSFKRLLSLNAPE 667
Query: 661 WKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLA 720
WKQGLIG+LSAIA GSVQP YALTIGGMISAFFA+SH EM+ RIRTYSLIFCSLSL S+
Sbjct: 668 WKQGLIGTLSAIAFGSVQPLYALTIGGMISAFFAESHQEMRHRIRTYSLIFCSLSLASII 727
Query: 721 FNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSL 780
NLLQHYNFAYMG +LTKRIRL MLE ILTFE AWFDEEQNSSGALCSRLSNEASMVKSL
Sbjct: 728 LNLLQHYNFAYMGAKLTKRIRLGMLENILTFETAWFDEEQNSSGALCSRLSNEASMVKSL 787
Query: 781 VADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVK 840
VADR+SLLVQTTSAV IAMI+GL VAWKLA+VMIAVQPLTILCFYTRKVLLS++ST FVK
Sbjct: 788 VADRLSLLVQTTSAVTIAMIIGLAVAWKLALVMIAVQPLTILCFYTRKVLLSTLSTKFVK 847
Query: 841 AQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCL 900
AQNRSTQIAVEAV NHRIVTSFGS KVL +FDEAQE PRK+ARKKSWLAGIGMGSAQCL
Sbjct: 848 AQNRSTQIAVEAVYNHRIVTSFGSITKVLWLFDEAQEAPRKEARKKSWLAGIGMGSAQCL 907
Query: 901 TFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASV 960
TFMSWALDFW+GGTLV+K +ISAGDVFKTFF+LVSTGKVIA+AGSMTSDLAK STAVASV
Sbjct: 908 TFMSWALDFWFGGTLVEKREISAGDVFKTFFVLVSTGKVIADAGSMTSDLAKSSTAVASV 967
Query: 961 FKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPG 1020
F+ILDR+SLIP +AGD G KL+K+SGKIE++ VDFAYPSR +LR+F +EVKPG
Sbjct: 968 FEILDRKSLIP---KAGDNNNGIKLEKMSGKIELKNVDFAYPSRVGTPILRKFCLEVKPG 1024
Query: 1021 TSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIY 1080
SVGLVGKSGCGKSTVI LIQRFYDV++GSV+VD +D+RELD+HW+R+HTALVSQEPVIY
Sbjct: 1025 KSVGLVGKSGCGKSTVIALIQRFYDVKRGSVKVDDVDIRELDIHWHRQHTALVSQEPVIY 1084
Query: 1081 AGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIA 1140
+G+IRDNI+FGK DA+ENEVVEAARAANA EFISSLKDGYETECGERGVQLSGGQ+QRIA
Sbjct: 1085 SGSIRDNILFGKQDATENEVVEAARAANAQEFISSLKDGYETECGERGVQLSGGQKQRIA 1144
Query: 1141 IARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIAL 1200
IARAIIRNP ILLLDEATSALDVQSEQVVQEALDR M+GRTT+VVAHRLNTIK+LDSIA
Sbjct: 1145 IARAIIRNPKILLLDEATSALDVQSEQVVQEALDRTMVGRTTVVVAHRLNTIKELDSIAY 1204
Query: 1201 VADGRVVERGTYAQLTHMRGAFFNLATLQ 1229
V++G+V+E+GTYAQL H RGAFFNLA+L+
Sbjct: 1205 VSEGKVLEQGTYAQLRHKRGAFFNLASLK 1233
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436042|ref|XP_004135803.1| PREDICTED: putative ABC transporter B family member 8-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1947 bits (5043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 951/1221 (77%), Positives = 1088/1221 (89%), Gaps = 18/1221 (1%)
Query: 11 GIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLD 70
G+IFR+AD DILLM LGT+GAIGDGMSTNCLLVFAS +MNSLG G Q +NF+D
Sbjct: 24 GVIFRYADWVDILLMFLGTIGAIGDGMSTNCLLVFASSLMNSLGNGHIQ------QNFMD 77
Query: 71 EVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDAT 130
V KCSLYFVYLGL VMV+AF+EGYCWSKTSERQV+KIR+KYLEAVLRQEVGFFDSQ+AT
Sbjct: 78 NVNKCSLYFVYLGLVVMVLAFMEGYCWSKTSERQVLKIRHKYLEAVLRQEVGFFDSQEAT 137
Query: 131 TTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLI 190
T ++V+NSISKDTSL+QE+LSEKVP+F+MN+SVF+SGL FS YFSWRL+LVAFPT+LLL+
Sbjct: 138 T-ADVVNSISKDTSLLQEVLSEKVPLFIMNSSVFLSGLGFSAYFSWRLALVAFPTMLLLV 196
Query: 191 IPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTK 250
IPG+ YGKYL++++ K KEYGKAN IVEQALSSIKT+Y+F+AE+R+I+ Y+ IL+ TT+
Sbjct: 197 IPGVTYGKYLVHVTNKRRKEYGKANGIVEQALSSIKTIYAFTAEKRVIENYKRILERTTR 256
Query: 251 LGIKQGTAKGLAVGSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGS 310
+GIKQG AKGLAVGS+GL+FAIW +AWYGS LVM+KGE+GG+IYAAGISFIL+GLSLG
Sbjct: 257 VGIKQGIAKGLAVGSSGLAFAIWGLIAWYGSRLVMYKGESGGRIYAAGISFILAGLSLGV 316
Query: 311 ALPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDS 370
ALP+LK+ TEA IAASRIF IDR P IDGED+KGL+L+ ++ IEF+H+ F+YPSRPDS
Sbjct: 317 ALPDLKHLTEAKIAASRIFKTIDRSPLIDGEDSKGLILNNLQPHIEFDHITFAYPSRPDS 376
Query: 371 IVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVR 430
VLKDFNLK+ GK++ALVG SGSGKST I+L+QRFYD DG++++DGVDI+ LQLKW+R
Sbjct: 377 FVLKDFNLKLDPGKTLALVGPSGSGKSTVISLLQRFYDPIDGVLKVDGVDIKALQLKWIR 436
Query: 431 REMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGER 490
+MGLVSQ+HALFGTSIK+NI+FGKLDA+M+E++ AA AANAHNFI QLPEGYETKVGER
Sbjct: 437 SKMGLVSQDHALFGTSIKENILFGKLDASMEEIMVAAMAANAHNFITQLPEGYETKVGER 496
Query: 491 GALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAH 550
GALLSGGQKQRIAIARAI+KNP ILLLDEATSALDSESE LVQNALDQASLGRTTLVVAH
Sbjct: 497 GALLSGGQKQRIAIARAIVKNPAILLLDEATSALDSESEALVQNALDQASLGRTTLVVAH 556
Query: 551 KLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQFSCDDQETIPETHVS 610
KLST+R AD+IAVV+ G +VEIG+HNDLINR +GHYAK+AKLQR S DD E E S
Sbjct: 557 KLSTIRKADVIAVVNGGGIVEIGSHNDLINRKNGHYAKLAKLQRLSSYDDVEQNIEIRAS 616
Query: 611 SVTRSSGGRLSAARSSPAIFA-SPLPVIDSPQPVTYL-PPSFFRLLSLNAPEWKQGLIGS 668
SV RSS ARSSP FA SPLP+ PQ + PPSF RLLSLN+PEWKQ L GS
Sbjct: 617 SVGRSS------ARSSPTFFAKSPLPMEILPQETSSPKPPSFTRLLSLNSPEWKQALTGS 670
Query: 669 LSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYN 728
LSAIA G+VQP YALT+GGMISAFFA+SH EMQ+RIRTYS+IFCSLSL+S+ NL+QHYN
Sbjct: 671 LSAIAFGAVQPIYALTVGGMISAFFAQSHYEMQARIRTYSMIFCSLSLVSIILNLVQHYN 730
Query: 729 FAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLL 788
FAYMG LTKRIRLR LEKILTFE AWFD+EQNSSGALCSRLSNEAS+VKSLVADRVSLL
Sbjct: 731 FAYMGEHLTKRIRLRTLEKILTFETAWFDKEQNSSGALCSRLSNEASLVKSLVADRVSLL 790
Query: 789 VQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQI 848
VQTTS V IAMI+GLVVAWKLA+VMIAVQPLTILCFYTRKVLLSS+STNF KAQN+STQI
Sbjct: 791 VQTTSGVTIAMILGLVVAWKLAIVMIAVQPLTILCFYTRKVLLSSISTNFTKAQNQSTQI 850
Query: 849 AVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMSWALD 908
AVEAV NHRIVTSF S KVLQIFD+AQE PR +A KKSW AGIGMGSAQCLTFMSWALD
Sbjct: 851 AVEAVYNHRIVTSFSSIEKVLQIFDKAQEAPRNEAVKKSWFAGIGMGSAQCLTFMSWALD 910
Query: 909 FWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQS 968
FW+GGTLVQKG+ISAGDVFKTFFILVSTGKVIAEAGSMT+DLAKGS AVASVF+ILDR+S
Sbjct: 911 FWFGGTLVQKGEISAGDVFKTFFILVSTGKVIAEAGSMTTDLAKGSAAVASVFEILDRKS 970
Query: 969 LIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGK 1028
LI S+ G RGSK++KI+G IEM++VDF YPSRP+ +VLRQFS+EVK G SVGLVGK
Sbjct: 971 LISDPSKDG---RGSKMEKITGNIEMKKVDFWYPSRPNNMVLRQFSLEVKAGRSVGLVGK 1027
Query: 1029 SGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNI 1088
SGCGKSTVIGLI RFYDV +G+V+VDG+D+RE+D+ WYRKH ALVSQ+PVI++G+IRDNI
Sbjct: 1028 SGCGKSTVIGLILRFYDVVKGTVKVDGVDIREMDLQWYRKHVALVSQDPVIFSGSIRDNI 1087
Query: 1089 VFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRN 1148
+FGKLDASENE+V+AARAANAHEFISSLKDGY TECGERGVQLSGGQ+QRIAIARAIIRN
Sbjct: 1088 LFGKLDASENELVDAARAANAHEFISSLKDGYGTECGERGVQLSGGQKQRIAIARAIIRN 1147
Query: 1149 PTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVE 1208
PTILLLDEATSALDVQSEQVVQ+ALDRIM+GRTT+VVAHRLNTIKKLDSIA VADG+VVE
Sbjct: 1148 PTILLLDEATSALDVQSEQVVQQALDRIMVGRTTLVVAHRLNTIKKLDSIAFVADGKVVE 1207
Query: 1209 RGTYAQLTHMRGAFFNLATLQ 1229
+G+YAQL + RGAFFNLA LQ
Sbjct: 1208 QGSYAQLKNQRGAFFNLANLQ 1228
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449489907|ref|XP_004158455.1| PREDICTED: LOW QUALITY PROTEIN: putative ABC transporter B family member 8-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1929 bits (4997), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 951/1221 (77%), Positives = 1088/1221 (89%), Gaps = 18/1221 (1%)
Query: 11 GIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLD 70
G+IFR+AD DILLM LGT+GAIGDGMSTNCLLVFAS +MNSLG G Q +NF+D
Sbjct: 24 GVIFRYADWVDILLMFLGTIGAIGDGMSTNCLLVFASSLMNSLGNGHIQ------QNFMD 77
Query: 71 EVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDAT 130
V KCSLYFVYLGL VMV+AF+EGYCWSKTSERQV+KIR+KYLEAVLRQEVGFFDSQ+AT
Sbjct: 78 NVNKCSLYFVYLGLVVMVLAFMEGYCWSKTSERQVLKIRHKYLEAVLRQEVGFFDSQEAT 137
Query: 131 TTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLI 190
T ++V+NSISKDTSL+QE+LSEKVP+F+MN+SVF+SGL FS YFSWRL+LVAFPT+LLL+
Sbjct: 138 T-ADVVNSISKDTSLLQEVLSEKVPLFIMNSSVFLSGLGFSAYFSWRLALVAFPTMLLLV 196
Query: 191 IPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTK 250
IPG+ YGKYL++++ K KEYGKAN IVEQALSSIKT+Y+F+AE+R+I+ Y+ IL+ TT+
Sbjct: 197 IPGVTYGKYLVHVTNKRRKEYGKANGIVEQALSSIKTIYAFTAEKRVIENYKRILERTTR 256
Query: 251 LGIKQGTAKGLAVGSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGS 310
+GIKQG AKGLAVGS+GL+FAIW +AWYGS LVM+KGE+GG+IYAAGISFIL+GLSLG
Sbjct: 257 VGIKQGIAKGLAVGSSGLAFAIWGLIAWYGSRLVMYKGESGGRIYAAGISFILAGLSLGV 316
Query: 311 ALPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDS 370
ALP+LK+ TEA IAASRIF IDR P IDGED+KGL+L+ ++ IEF+H+ F+YPSRPDS
Sbjct: 317 ALPDLKHLTEAKIAASRIFKTIDRSPLIDGEDSKGLILNNLQPHIEFDHITFAYPSRPDS 376
Query: 371 IVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVR 430
VLKDFNLK+ GK++ALVG SGSGKST I+L+QRFYD DG++++DGVDI+ LQLKW+R
Sbjct: 377 FVLKDFNLKLDPGKTLALVGPSGSGKSTVISLLQRFYDPIDGVLKVDGVDIKALQLKWIR 436
Query: 431 REMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGER 490
+MGLVSQ+HALFGTSIK+NI+FGKLDA+M+E++AAA AANAHNFI QLPEGYETKVGER
Sbjct: 437 SKMGLVSQDHALFGTSIKENILFGKLDASMEEIMAAAMAANAHNFITQLPEGYETKVGER 496
Query: 491 GALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAH 550
GALLSGGQKQRIAIARAI+KNP ILLLDEATSALDSESE LVQNALDQASLGRTTLVVAH
Sbjct: 497 GALLSGGQKQRIAIARAIVKNPAILLLDEATSALDSESEALVQNALDQASLGRTTLVVAH 556
Query: 551 KLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQFSCDDQETIPETHVS 610
KLST+R AD+IAVV+ G +VEIG+HNDLIN +GHYAK+AKLQR S DD E E S
Sbjct: 557 KLSTIRKADVIAVVNGGGIVEIGSHNDLINXKNGHYAKLAKLQRLSSYDDVEQNIEIRAS 616
Query: 611 SVTRSSGGRLSAARSSPAIFA-SPLPVIDSPQPVTYL-PPSFFRLLSLNAPEWKQGLIGS 668
SV RSS ARSSP FA SPLP+ PQ + PPSF RLLSLN+PEWKQ L GS
Sbjct: 617 SVGRSS------ARSSPTFFAKSPLPMEILPQETSSPKPPSFTRLLSLNSPEWKQALTGS 670
Query: 669 LSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYN 728
LSAIA G+VQP YALT+GGMISAFFA+SH EMQ+RIRTYS+IFCSLSL+S+ NL+QHYN
Sbjct: 671 LSAIAFGAVQPIYALTVGGMISAFFAQSHYEMQARIRTYSMIFCSLSLVSIILNLVQHYN 730
Query: 729 FAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLL 788
FAYMG LTKRIRLR LEKILTFE AWFD+EQNSSGALCSRLSNEAS+VKSLVADRVSLL
Sbjct: 731 FAYMGEHLTKRIRLRTLEKILTFETAWFDKEQNSSGALCSRLSNEASLVKSLVADRVSLL 790
Query: 789 VQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQI 848
VQTTS V IAMI+GLVVAWKLA+VMIAVQPLTILCFYTRKVLLSS+STNF KAQN+STQI
Sbjct: 791 VQTTSGVTIAMILGLVVAWKLAIVMIAVQPLTILCFYTRKVLLSSISTNFTKAQNQSTQI 850
Query: 849 AVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMSWALD 908
AVEAV NHRIVTSF S KVLQIFD+AQE PR +A KKSW AGIGMGSAQCLTFMSWALD
Sbjct: 851 AVEAVYNHRIVTSFSSIEKVLQIFDKAQEAPRNEAVKKSWFAGIGMGSAQCLTFMSWALD 910
Query: 909 FWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQS 968
FW+GGTLVQKG+ISAGDVFKTFFILVSTGKVIAEAGSMT+DLAKGS AVASVF+ILDR+S
Sbjct: 911 FWFGGTLVQKGEISAGDVFKTFFILVSTGKVIAEAGSMTTDLAKGSAAVASVFEILDRKS 970
Query: 969 LIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGK 1028
LI S+ G RGSK++KI+G IEM++VDF YPSRP+ +VLRQFS+EVK G SVGLVGK
Sbjct: 971 LISDPSKDG---RGSKMEKITGNIEMKKVDFWYPSRPNNMVLRQFSLEVKAGRSVGLVGK 1027
Query: 1029 SGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNI 1088
SGCGKSTVIGLI RFYDV +G+V+VDG+D+RE+D+ WYRKH ALVSQ+PVI++G+IRDNI
Sbjct: 1028 SGCGKSTVIGLILRFYDVVKGTVKVDGVDIREMDLQWYRKHVALVSQDPVIFSGSIRDNI 1087
Query: 1089 VFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRN 1148
+FGKLDASENE+V+AARAANAHEFISSLKDGY TECGERGVQLSGGQ+QRIAIARAIIRN
Sbjct: 1088 LFGKLDASENELVDAARAANAHEFISSLKDGYGTECGERGVQLSGGQKQRIAIARAIIRN 1147
Query: 1149 PTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVE 1208
PTILLLDEATSALDVQSEQVVQ+ALDRIM+GRTT+VVAHRLNTIKKLDSIA VADG+VVE
Sbjct: 1148 PTILLLDEATSALDVQSEQVVQQALDRIMVGRTTLVVAHRLNTIKKLDSIAFVADGKVVE 1207
Query: 1209 RGTYAQLTHMRGAFFNLATLQ 1229
+G+YAQL + RGAFFNLA LQ
Sbjct: 1208 QGSYAQLKNQRGAFFNLANLQ 1228
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218188981|gb|EEC71408.1| hypothetical protein OsI_03576 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 1761 bits (4560), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 856/1221 (70%), Positives = 1042/1221 (85%), Gaps = 10/1221 (0%)
Query: 13 IFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHE----NF 68
+F+FADR D+LLM LGT+GAIGDG STN LL+FAS +MNSLG+ + + +F
Sbjct: 19 MFKFADRVDVLLMALGTLGAIGDGCSTNLLLIFASDVMNSLGYARAGAHGGAAAATGVDF 78
Query: 69 LDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQD 128
+ EVEK L FVYL AV+ VAF+EGYCWS+TSERQV++IRY YL+A+LRQEVGFFDSQ+
Sbjct: 79 MREVEKSCLNFVYLAFAVLAVAFMEGYCWSRTSERQVLRIRYLYLQAILRQEVGFFDSQE 138
Query: 129 ATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLL 188
ATT SE+INSISKD SLIQE+LSEKVP+F+M+++VFISGLAFSTYFSWRL+LV+FP +LL
Sbjct: 139 ATT-SEIINSISKDASLIQEVLSEKVPLFLMHSTVFISGLAFSTYFSWRLALVSFPLVLL 197
Query: 189 LIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDST 248
LIIPG+IYGKYL+YLS+++ EY AN++VEQAL SIKTVYSF+AE+RII RY A+LD T
Sbjct: 198 LIIPGLIYGKYLLYLSRQSRHEYTNANSLVEQALGSIKTVYSFTAEKRIIQRYTAVLDKT 257
Query: 249 TKLGIKQGTAKGLAVGSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSL 308
KLGI+QG AKGLAVG TGLSFAIWAFLAWYGS LVM+ E+GG+IYAAGISF+L GLSL
Sbjct: 258 IKLGIRQGIAKGLAVGFTGLSFAIWAFLAWYGSRLVMYHHESGGRIYAAGISFVLGGLSL 317
Query: 309 GSALPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRP 368
G ALPELK+FTEAS+AA+RI DRI+RVPEI+ +D KGL+LD+VRGE++FE V+F YPSRP
Sbjct: 318 GMALPELKHFTEASVAATRILDRINRVPEINADDPKGLILDQVRGELQFESVRFVYPSRP 377
Query: 369 DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKW 428
+ VLKDFNL++ AG++VALVG+SGSGKSTAIALVQRFYDA +G V++DGV+I+ LQLKW
Sbjct: 378 NMTVLKDFNLQIPAGQTVALVGSSGSGKSTAIALVQRFYDATEGTVKVDGVNIKELQLKW 437
Query: 429 VRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVG 488
+R +MGLVSQ+HALFGTSIK+NI+FGK DATMDE+ AAA ANAHNFIR LPE YETK+G
Sbjct: 438 IRSKMGLVSQDHALFGTSIKENILFGKPDATMDELYAAAMTANAHNFIRGLPEEYETKIG 497
Query: 489 ERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVV 548
ERGALLSGGQKQRIAIARA+IKNP ILLLDEATSALDSESE LVQ+ALDQAS+GRTTLVV
Sbjct: 498 ERGALLSGGQKQRIAIARAVIKNPAILLLDEATSALDSESEKLVQHALDQASMGRTTLVV 557
Query: 549 AHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQFSCDDQETIPETH 608
AHKLSTV+NAD IAVVD G + EIGTH++LIN+ G Y+++ KLQ+ S DQE +
Sbjct: 558 AHKLSTVKNADQIAVVDGGTIAEIGTHDELINK-GGPYSRLVKLQKMVSYIDQEGGDQFR 616
Query: 609 VSSVTRSSGGRLSAARSSPAIFASPLPVIDSPQPVTYLPPSFFRLLSLNAPEWKQGLIGS 668
SSV R+S RLS +R+SP +P ++ V+ PSF RLL++NAPEW+Q +IGS
Sbjct: 617 ASSVARTSTSRLSMSRASPMPL-TPGISKETDSSVSPPAPSFSRLLAMNAPEWRQAVIGS 675
Query: 669 LSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYN 728
LSA+ GS+QP YA+TIGGMI+AFF + +EM + I Y+LIFCSLS+IS+ NLLQHYN
Sbjct: 676 LSALVYGSLQPIYAITIGGMIAAFFVQDLNEMNAIISRYALIFCSLSVISIVVNLLQHYN 735
Query: 729 FAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLL 788
FAYMG L +RIR+++LEKILTFEAAWFDEE NSSG+LCSRLSNEAS+VK+LVADR+SLL
Sbjct: 736 FAYMGEHLVRRIRVQVLEKILTFEAAWFDEETNSSGSLCSRLSNEASLVKTLVADRISLL 795
Query: 789 VQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQI 848
+QT S + IA+ MGL+VAWKLA+VMIAVQP T++C+Y +K++LS+VS + KAQ++STQI
Sbjct: 796 LQTASGIIIAVTMGLIVAWKLALVMIAVQPTTMICYYAKKIVLSNVSRDLAKAQHQSTQI 855
Query: 849 AVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMSWALD 908
A+EAV NHR+VTSFG + KVLQ+F+ QEEP K+ARKKSW+AGI G + CL+F+SWALD
Sbjct: 856 AIEAVYNHRMVTSFGCSSKVLQLFEHTQEEPLKRARKKSWVAGITTGLSPCLSFLSWALD 915
Query: 909 FWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQS 968
FWYGG L Q G+ISAGDVFKTFF+LVSTGK+IA+AGSMTSDLAKG+ AVASVF++LDR+S
Sbjct: 916 FWYGGKLAQSGEISAGDVFKTFFVLVSTGKLIADAGSMTSDLAKGANAVASVFEVLDRKS 975
Query: 969 LIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGK 1028
+ P +SQ + ++ KI G+IE +RVDFAYP+RP L+L+ FS++VK GTS+GLVG+
Sbjct: 976 ISPQNSQV---EKDNQKNKIQGRIEFKRVDFAYPTRPQCLILQDFSLDVKAGTSIGLVGR 1032
Query: 1029 SGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNI 1088
SGCGKST+IGLIQRFYDV++G+V+VDGMDVRE+D+ WYR TALVSQEP I++G++RDNI
Sbjct: 1033 SGCGKSTIIGLIQRFYDVDRGAVKVDGMDVREMDILWYRGFTALVSQEPAIFSGSVRDNI 1092
Query: 1089 VFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRN 1148
FGK +A E+E+VEAA+AANAHEFISSLKDGY T+CGE G+QLSGGQ+QRIAIARAIIRN
Sbjct: 1093 AFGKPEADEDEIVEAAKAANAHEFISSLKDGYHTDCGEHGLQLSGGQKQRIAIARAIIRN 1152
Query: 1149 PTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVE 1208
P ILLLDEATSALD QSEQVVQEALDRIM GRTTIVVAHRLNTIK +DSIA + +G+VVE
Sbjct: 1153 PAILLLDEATSALDAQSEQVVQEALDRIMSGRTTIVVAHRLNTIKNVDSIAFLGEGKVVE 1212
Query: 1209 RGTYAQLTHMRGAFFNLATLQ 1229
RGTY L +GAF+NLA LQ
Sbjct: 1213 RGTYPHLMSKKGAFYNLAALQ 1233
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115439661|ref|NP_001044110.1| Os01g0723800 [Oryza sativa Japonica Group] gi|27368839|emb|CAD59577.1| MDR-like ABC transporter [Oryza sativa Japonica Group] gi|57899545|dbj|BAD87059.1| MDR-like p-glycoprotein-like [Oryza sativa Japonica Group] gi|113533641|dbj|BAF06024.1| Os01g0723800 [Oryza sativa Japonica Group] gi|222619184|gb|EEE55316.1| hypothetical protein OsJ_03309 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 1760 bits (4558), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 856/1221 (70%), Positives = 1041/1221 (85%), Gaps = 10/1221 (0%)
Query: 13 IFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHE----NF 68
+F+FADR D+LLM LGT+GAIGDG STN LL+FAS +MNSLG+ + + +F
Sbjct: 19 MFKFADRVDVLLMALGTLGAIGDGCSTNLLLIFASDVMNSLGYARAGAHGGAAAATGVDF 78
Query: 69 LDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQD 128
+ EVEK L FVYL AV+ VAF+EGYCWS+TSERQV++IRY YL+A+LRQEVGFFDSQ+
Sbjct: 79 MREVEKSCLNFVYLAFAVLAVAFMEGYCWSRTSERQVLRIRYLYLQAILRQEVGFFDSQE 138
Query: 129 ATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLL 188
ATT SE+INSISKD SLIQE+LSEKVP+F+M+++VFISGLAFSTYFSWRL+LV+FP +LL
Sbjct: 139 ATT-SEIINSISKDASLIQEVLSEKVPLFLMHSTVFISGLAFSTYFSWRLALVSFPLVLL 197
Query: 189 LIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDST 248
LIIPG+IYGKYL+YLS+++ EY AN++VEQAL SIKTVYSF+AE+RII RY A+LD T
Sbjct: 198 LIIPGLIYGKYLLYLSRQSRHEYTNANSLVEQALGSIKTVYSFTAEKRIIQRYTAVLDKT 257
Query: 249 TKLGIKQGTAKGLAVGSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSL 308
KLGI+QG AKGLAVG TGLSFAIWAFLAWYGS LVM+ E+GG+IYAAGISF+L GLSL
Sbjct: 258 IKLGIRQGIAKGLAVGFTGLSFAIWAFLAWYGSRLVMYHHESGGRIYAAGISFVLGGLSL 317
Query: 309 GSALPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRP 368
G ALPELK+FTEAS+AA+RI DRI+RVPEI+ +D KGL+LD+VRGE++FE V+F YPSRP
Sbjct: 318 GMALPELKHFTEASVAATRILDRINRVPEINADDPKGLILDQVRGELQFESVRFVYPSRP 377
Query: 369 DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKW 428
+ VLKDFNL++ AG++VALVG+SGSGKSTAIALVQRFYDA +G V++DGV+I+ LQLKW
Sbjct: 378 NMTVLKDFNLQIPAGQTVALVGSSGSGKSTAIALVQRFYDATEGTVKVDGVNIKELQLKW 437
Query: 429 VRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVG 488
+R +MGLVSQ+HALFGTSIK+NI+FGK DATMDE+ AAA ANAHNFIR LPE YETK+G
Sbjct: 438 IRSKMGLVSQDHALFGTSIKENILFGKPDATMDELYAAAMTANAHNFIRGLPEEYETKIG 497
Query: 489 ERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVV 548
ERGALLSGGQKQRIAIARA+IKNP ILLLDEATSALDSESE LVQ+ALDQAS+GRTTLVV
Sbjct: 498 ERGALLSGGQKQRIAIARAVIKNPAILLLDEATSALDSESEKLVQHALDQASMGRTTLVV 557
Query: 549 AHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQFSCDDQETIPETH 608
AHKLSTV+NAD IAVVD G + EIGTH++LIN+ G Y+++ KLQ+ S DQE +
Sbjct: 558 AHKLSTVKNADQIAVVDGGTIAEIGTHDELINK-GGPYSRLVKLQKMVSYIDQEGGDQFR 616
Query: 609 VSSVTRSSGGRLSAARSSPAIFASPLPVIDSPQPVTYLPPSFFRLLSLNAPEWKQGLIGS 668
SSV R+S RLS +R+SP +P ++ V+ PSF RLL++NAPEW+Q +IGS
Sbjct: 617 ASSVARTSTSRLSMSRASPMPL-TPGISKETDSSVSPPAPSFSRLLAMNAPEWRQAVIGS 675
Query: 669 LSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYN 728
LSA+ GS+QP YA+TIGGMI+AFF + EM + I Y+LIFCSLS+IS+ NLLQHYN
Sbjct: 676 LSALVYGSLQPIYAITIGGMIAAFFVQDLKEMNAIISRYALIFCSLSVISIVVNLLQHYN 735
Query: 729 FAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLL 788
FAYMG L +RIR+++LEKILTFEAAWFDEE NSSG+LCSRLSNEAS+VK+LVADR+SLL
Sbjct: 736 FAYMGEHLVRRIRVQVLEKILTFEAAWFDEETNSSGSLCSRLSNEASLVKTLVADRISLL 795
Query: 789 VQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQI 848
+QT S + IA+ MGL+VAWKLA+VMIAVQP T++C+Y +K++LS+VS + KAQ++STQI
Sbjct: 796 LQTASGIIIAVTMGLIVAWKLALVMIAVQPTTMICYYAKKIVLSNVSRDLAKAQHQSTQI 855
Query: 849 AVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMSWALD 908
A+EAV NHR+VTSFG + KVLQ+F+ QEEP K+ARKKSW+AGI G + CL+F+SWALD
Sbjct: 856 AIEAVYNHRMVTSFGCSSKVLQLFEHTQEEPLKRARKKSWVAGITTGLSPCLSFLSWALD 915
Query: 909 FWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQS 968
FWYGG L Q G+ISAGDVFKTFF+LVSTGK+IA+AGSMTSDLAKG+ AVASVF++LDR+S
Sbjct: 916 FWYGGKLAQSGEISAGDVFKTFFVLVSTGKLIADAGSMTSDLAKGANAVASVFEVLDRKS 975
Query: 969 LIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGK 1028
+ P +SQ + ++ KI G+IE +RVDFAYP+RP L+L+ FS++VK GTS+GLVG+
Sbjct: 976 ISPQNSQV---EKDNQKNKIQGRIEFKRVDFAYPTRPQCLILQDFSLDVKAGTSIGLVGR 1032
Query: 1029 SGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNI 1088
SGCGKST+IGLIQRFYDV++G+V+VDGMDVRE+D+ WYR TALVSQEP I++G++RDNI
Sbjct: 1033 SGCGKSTIIGLIQRFYDVDRGAVKVDGMDVREMDILWYRGFTALVSQEPAIFSGSVRDNI 1092
Query: 1089 VFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRN 1148
FGK +A E+E+VEAA+AANAHEFISSLKDGY T+CGE G+QLSGGQ+QRIAIARAIIRN
Sbjct: 1093 AFGKPEADEDEIVEAAKAANAHEFISSLKDGYHTDCGEHGLQLSGGQKQRIAIARAIIRN 1152
Query: 1149 PTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVE 1208
P ILLLDEATSALD QSEQVVQEALDRIM GRTTIVVAHRLNTIK +DSIA + +G+VVE
Sbjct: 1153 PAILLLDEATSALDAQSEQVVQEALDRIMSGRTTIVVAHRLNTIKNVDSIAFLGEGKVVE 1212
Query: 1209 RGTYAQLTHMRGAFFNLATLQ 1229
RGTY L +GAF+NLA LQ
Sbjct: 1213 RGTYPHLMSKKGAFYNLAALQ 1233
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|414880680|tpg|DAA57811.1| TPA: hypothetical protein ZEAMMB73_975376 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 1753 bits (4541), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 855/1222 (69%), Positives = 1045/1222 (85%), Gaps = 8/1222 (0%)
Query: 9 NIGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHE-N 67
NI IFRFADR D+LLM LGT+GAIGDG STN LL+FAS +MN+LG+G Q+
Sbjct: 16 NIRGIFRFADRVDVLLMALGTLGAIGDGCSTNLLLIFASDVMNALGYGGAQAGGGAKSAQ 75
Query: 68 FLDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQ 127
F+ EVEK L FVYLGL V+ VAF+EGYCWS+TSERQV++IRY YL+A+LRQE GFFDSQ
Sbjct: 76 FMHEVEKSCLNFVYLGLVVLAVAFMEGYCWSRTSERQVLRIRYLYLQAILRQEAGFFDSQ 135
Query: 128 DATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLL 187
+ATT SE+INSISKD S IQE+LSEKVP+F+M+++VF+SGLAF+TYF WRL+LV+FP +L
Sbjct: 136 EATT-SEIINSISKDASHIQEVLSEKVPLFLMHSTVFVSGLAFATYFCWRLALVSFPLVL 194
Query: 188 LLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDS 247
LLIIPG+IYGKYL+YLS+++ EY KAN++V+QAL SIKTVYSF+AE+RII RY AILD
Sbjct: 195 LLIIPGLIYGKYLLYLSRRSRHEYAKANSLVDQALGSIKTVYSFTAEKRIIQRYTAILDK 254
Query: 248 TTKLGIKQGTAKGLAVGSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLS 307
T KLGIKQG AKGLAVG TGLSFAIWAFLAWYG LV+F TGG+IYAAGISF+L GLS
Sbjct: 255 TIKLGIKQGIAKGLAVGFTGLSFAIWAFLAWYGGRLVVFHHVTGGRIYAAGISFVLGGLS 314
Query: 308 LGSALPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSR 367
LG ALPELK+F EAS+AA+RI DRI+RVP+ID ED KGLVLD++RGE+EFE V+F YPSR
Sbjct: 315 LGMALPELKHFAEASVAATRILDRINRVPQIDAEDPKGLVLDQIRGELEFESVRFEYPSR 374
Query: 368 PDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLK 427
P+ VLK+F+L++ AG+++ALVG+SGSGKSTAIALVQRFYDA +G V++DG DI+ LQLK
Sbjct: 375 PNMPVLKNFSLQIPAGQTIALVGSSGSGKSTAIALVQRFYDASEGTVKVDGFDIKELQLK 434
Query: 428 WVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKV 487
W+R +MGLVSQ+HALFGTSIK+NI+FGK DATMDEV AAA ANAHNFIR LPE YETK+
Sbjct: 435 WIRSKMGLVSQDHALFGTSIKENILFGKPDATMDEVYAAAMTANAHNFIRGLPEEYETKI 494
Query: 488 GERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLV 547
GERGALLSGGQKQRIAIARA+IKN ILLLDEATSALDSESE LVQ+ALDQAS+GRTTLV
Sbjct: 495 GERGALLSGGQKQRIAIARAVIKNTAILLLDEATSALDSESEKLVQHALDQASMGRTTLV 554
Query: 548 VAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQFSCDDQETIPET 607
VAHKLSTV+NAD IAVVD G + EIGTH++LI++ G Y+++ KLQ+ S DQE +
Sbjct: 555 VAHKLSTVKNADQIAVVDGGTIAEIGTHDELISK-GGPYSRLVKLQKMVSYIDQEN-DQF 612
Query: 608 HVSSVTRSSGGRLSAARSSPAIFASPLPVIDSPQPVTYLPPSFFRLLSLNAPEWKQGLIG 667
SSV R+S R S +R+SP +P + ++ V PSF RLL++NAPEW+Q ++G
Sbjct: 613 RASSVARTSTSRHSMSRASPMPL-TPAALKENDSDVHPPAPSFSRLLAMNAPEWRQAVVG 671
Query: 668 SLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHY 727
SLSA+ GS+QP YA+TIGGMI+AFF + +EM + IR Y+LIFCSLSL+S+ NLLQHY
Sbjct: 672 SLSALVYGSLQPIYAITIGGMIAAFFVQDQNEMNAIIRRYALIFCSLSLVSIVVNLLQHY 731
Query: 728 NFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSL 787
NFAYMG L +RIR+++LEKILTFEAAWFDEE NSSGALCSRLSNEAS+VK+LVADR+SL
Sbjct: 732 NFAYMGEHLVRRIRVQVLEKILTFEAAWFDEETNSSGALCSRLSNEASLVKTLVADRISL 791
Query: 788 LVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQ 847
L+QT S + IA+ MGL+VAWKLA+VMIAVQP T++C+Y +K++LS+VS + KAQ++STQ
Sbjct: 792 LLQTASGIIIAVTMGLMVAWKLALVMIAVQPSTMMCYYAKKMVLSNVSRDLAKAQHQSTQ 851
Query: 848 IAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMSWAL 907
IA+EAV NHR+VTSFG + KVLQ+F+ AQEEP K+ARKKSW+AGI G + CL+F+SWAL
Sbjct: 852 IAIEAVYNHRMVTSFGCSSKVLQLFEHAQEEPLKKARKKSWVAGITTGLSPCLSFLSWAL 911
Query: 908 DFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQ 967
DFWYGG L Q G+ISAGDVFKTFF+LVSTGK+IA+AGSMTSDLAKGS AVASVF++LDR+
Sbjct: 912 DFWYGGKLAQSGEISAGDVFKTFFVLVSTGKLIADAGSMTSDLAKGSNAVASVFEVLDRK 971
Query: 968 SLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVG 1027
S+ P +SQ + + +KI G+IE ++VDFAYP+RP+ L+L+ FS++VK GTSVGLVG
Sbjct: 972 SISPKNSQV---EKEDQKKKIEGRIEFKKVDFAYPTRPECLILQDFSLDVKAGTSVGLVG 1028
Query: 1028 KSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDN 1087
+SGCGKST+IGLIQRFYDV++G+VR+DGMDVRE+++ W+R TALVSQEP +++G++RDN
Sbjct: 1029 RSGCGKSTIIGLIQRFYDVDRGAVRIDGMDVREMNILWFRGFTALVSQEPAMFSGSVRDN 1088
Query: 1088 IVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIR 1147
I FGK +A E+E+VEAA+AANAHEFIS+LKDGY+T+CGE G+QLSGGQ+QRIAIARAIIR
Sbjct: 1089 IAFGKPEADEDEIVEAAKAANAHEFISTLKDGYDTDCGEHGIQLSGGQKQRIAIARAIIR 1148
Query: 1148 NPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVV 1207
NPTILLLDEATSALD QSEQVVQEALDRIM GRTTIVVAHRLNTIK +DSIA + +G+VV
Sbjct: 1149 NPTILLLDEATSALDAQSEQVVQEALDRIMSGRTTIVVAHRLNTIKNVDSIAFLGEGKVV 1208
Query: 1208 ERGTYAQLTHMRGAFFNLATLQ 1229
ERG+Y QL + +GAF+NLATLQ
Sbjct: 1209 ERGSYPQLMNKKGAFYNLATLQ 1230
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1230 | ||||||
| UNIPROTKB|Q8GU81 | 1234 | mdr17 "Uncharacterized protein | 0.982 | 0.978 | 0.641 | 0.0 | |
| UNIPROTKB|Q6YUU5 | 1245 | LOC_Os02g09720 "Putative multi | 0.980 | 0.968 | 0.499 | 0.0 | |
| TAIR|locus:2088897 | 1240 | ABCB15 "ATP-binding cassette B | 0.983 | 0.975 | 0.481 | 1.10000010554e-317 | |
| TAIR|locus:2088942 | 1225 | ABCB18 "ATP-binding cassette B | 0.984 | 0.988 | 0.470 | 7.9e-307 | |
| TAIR|locus:2088927 | 1240 | ABCB17 "ATP-binding cassette B | 0.984 | 0.976 | 0.466 | 6.8e-301 | |
| TAIR|locus:2088912 | 1228 | ABCB16 "ATP-binding cassette B | 0.978 | 0.980 | 0.468 | 5.5e-299 | |
| TAIR|locus:504955759 | 1229 | ABCB22 "ATP-binding cassette B | 0.982 | 0.983 | 0.452 | 7.5e-295 | |
| TAIR|locus:2090734 | 1252 | ABCB19 "ATP-binding cassette B | 0.978 | 0.961 | 0.395 | 1.2e-234 | |
| UNIPROTKB|Q0JCP1 | 1259 | Os04g0459000 "Os04g0459000 pro | 0.978 | 0.956 | 0.396 | 5.7e-233 | |
| TAIR|locus:2057961 | 1286 | ABCB1 "ATP-binding cassette B1 | 0.466 | 0.446 | 0.428 | 5.3e-230 |
| UNIPROTKB|Q8GU81 mdr17 "Uncharacterized protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 3975 (1404.3 bits), Expect = 0., P = 0.
Identities = 785/1224 (64%), Positives = 950/1224 (77%)
Query: 13 IFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHE----NF 68
+F+FADR D+LLM LGT+GAIGDG STN LL+FAS +MNSLG+ + + +F
Sbjct: 19 MFKFADRVDVLLMALGTLGAIGDGCSTNLLLIFASDVMNSLGYARAGAHGGAAAATGVDF 78
Query: 69 LDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQD 128
+ EVEK L FVYL AV+ VAF+EGYCWS+TSERQV++IRY YL+A+LRQEVGFFDSQ+
Sbjct: 79 MREVEKSCLNFVYLAFAVLAVAFMEGYCWSRTSERQVLRIRYLYLQAILRQEVGFFDSQE 138
Query: 129 ATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLL 188
ATT SE+INSISKD SLIQE+LSEKVP+F+M+++VFISGLAFSTYFSWRL+LV+FP +LL
Sbjct: 139 ATT-SEIINSISKDASLIQEVLSEKVPLFLMHSTVFISGLAFSTYFSWRLALVSFPLVLL 197
Query: 189 LIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDST 248
LIIPG+IYGKYL+YLS+++ EY AN++VEQAL SIKTVYSF+AE+RII RY A+LD T
Sbjct: 198 LIIPGLIYGKYLLYLSRQSRHEYTNANSLVEQALGSIKTVYSFTAEKRIIQRYTAVLDKT 257
Query: 249 TKLGIKQGTAKGLAVGSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAXXXXXXXXXXXX 308
KLGI+QG AKGLAVG TGLSFAIWAFLAWYGS LVM+ E+GG+IYA
Sbjct: 258 IKLGIRQGIAKGLAVGFTGLSFAIWAFLAWYGSRLVMYHHESGGRIYAAGISFVLGGLSL 317
Query: 309 XXXXPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRP 368
PELK+FTEAS+AA+RI DRI+RVPEI+ +D KGL+LD+VRGE++FE V+F YPSRP
Sbjct: 318 GMALPELKHFTEASVAATRILDRINRVPEINADDPKGLILDQVRGELQFESVRFVYPSRP 377
Query: 369 DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKW 428
+ VLKDFNL++ AG++VALVG+SGSGKSTAIALVQRFYDA LQLKW
Sbjct: 378 NMTVLKDFNLQIPAGQTVALVGSSGSGKSTAIALVQRFYDATEGTVKVDGVNIKELQLKW 437
Query: 429 VRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIRQLPEGYETKVG 488
+R +MGLVSQ+HALFGTSIK+NI+FGK DATMDE+ HNFIR LPE YETK+G
Sbjct: 438 IRSKMGLVSQDHALFGTSIKENILFGKPDATMDELYAAAMTANAHNFIRGLPEEYETKIG 497
Query: 489 ERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVV 548
ERGALLSGGQKQ KNP ILLLDEATSALDSESE LVQ+ALDQAS+GRTTLVV
Sbjct: 498 ERGALLSGGQKQRIAIARAVIKNPAILLLDEATSALDSESEKLVQHALDQASMGRTTLVV 557
Query: 549 AHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQFSCDDQETIPETH 608
AHKLSTV+NAD IAVVD G + EIGTH++LIN+ G Y+++ KLQ+ S DQE +
Sbjct: 558 AHKLSTVKNADQIAVVDGGTIAEIGTHDELINK-GGPYSRLVKLQKMVSYIDQEGGDQFR 616
Query: 609 VSSVTXXXXXXXXXXXXXPAIFASPL-PVIDSPQPVTYLPP--SFFRLLSLNAPEWKQGL 665
SSV P PL P I + PP SF RLL++NAPEW+Q +
Sbjct: 617 ASSVARTSTSRLSMSRASPM----PLTPGISKETDSSVSPPAPSFSRLLAMNAPEWRQAV 672
Query: 666 IGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYXXXXXXXXXXXXAFNLLQ 725
IGSLSA+ GS+QP YA+TIGGMI+AFF + EM + I Y NLLQ
Sbjct: 673 IGSLSALVYGSLQPIYAITIGGMIAAFFVQDLKEMNAIISRYALIFCSLSVISIVVNLLQ 732
Query: 726 HYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRV 785
HYNFAYMG L +RIR+++LEKILTFEAAWFDEE NSSG+LCSRLSNEAS+VK+LVADR+
Sbjct: 733 HYNFAYMGEHLVRRIRVQVLEKILTFEAAWFDEETNSSGSLCSRLSNEASLVKTLVADRI 792
Query: 786 SLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRS 845
SLL+QT S + IA+ MGL+VAWKLA+VMIAVQP T++C+Y +K++LS+VS + KAQ++S
Sbjct: 793 SLLLQTASGIIIAVTMGLIVAWKLALVMIAVQPTTMICYYAKKIVLSNVSRDLAKAQHQS 852
Query: 846 TQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMSW 905
TQIA+EAV NHR+VTSFG + KVLQ+F+ QEEP K+ARKKSW+AGI G + CL+F+SW
Sbjct: 853 TQIAIEAVYNHRMVTSFGCSSKVLQLFEHTQEEPLKRARKKSWVAGITTGLSPCLSFLSW 912
Query: 906 ALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILD 965
ALDFWYGG L Q G+ISAGDVFKTFF+LVSTGK+IA+AGSMTSDLAKG+ AVASVF++LD
Sbjct: 913 ALDFWYGGKLAQSGEISAGDVFKTFFVLVSTGKLIADAGSMTSDLAKGANAVASVFEVLD 972
Query: 966 RQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGL 1025
R+S+ P +SQ + ++ KI G+IE +RVDFAYP+RP L+L+ FS++VK GTS+GL
Sbjct: 973 RKSISPQNSQV---EKDNQKNKIQGRIEFKRVDFAYPTRPQCLILQDFSLDVKAGTSIGL 1029
Query: 1026 VGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIR 1085
VG+SGCGKST+IGLIQRFYDV++G+V+VDGMDVRE+D+ WYR TALVSQEP I++G++R
Sbjct: 1030 VGRSGCGKSTIIGLIQRFYDVDRGAVKVDGMDVREMDILWYRGFTALVSQEPAIFSGSVR 1089
Query: 1086 DNIVFGKLDXXXXXXXXXXXXXXXXXFISSLKDGYETECGERGVQLSGGXXXXXXXXXXX 1145
DNI FGK + FISSLKDGY T+CGE G+QLSGG
Sbjct: 1090 DNIAFGKPEADEDEIVEAAKAANAHEFISSLKDGYHTDCGEHGLQLSGGQKQRIAIARAI 1149
Query: 1146 XXNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGR 1205
NP ILLLDEATSALD QSEQVVQEALDRIM GRTTIVVAHRLNTIK +DSIA + +G+
Sbjct: 1150 IRNPAILLLDEATSALDAQSEQVVQEALDRIMSGRTTIVVAHRLNTIKNVDSIAFLGEGK 1209
Query: 1206 VVERGTYAQLTHMRGAFFNLATLQ 1229
VVERGTY L +GAF+NLA LQ
Sbjct: 1210 VVERGTYPHLMSKKGAFYNLAALQ 1233
|
|
| UNIPROTKB|Q6YUU5 LOC_Os02g09720 "Putative multidrug resistance protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 3054 (1080.1 bits), Expect = 0., P = 0.
Identities = 612/1225 (49%), Positives = 835/1225 (68%)
Query: 13 IFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEV 72
+F AD D+ LMVLG +GA+GDG+ST +L+ SRI N LG G ++ F +V
Sbjct: 23 VFMHADAADVALMVLGLLGAMGDGISTPVMLLITSRIFNDLGSGADIVKE-----FSSKV 77
Query: 73 EKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTT 132
+ V+L A V+AFLEGYCW++T+ERQ ++R +YL AVLRQ+V +FD + +T
Sbjct: 78 NVNARNLVFLAAASWVMAFLEGYCWARTAERQASRMRARYLRAVLRQDVEYFDLKKGST- 136
Query: 133 SEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLIIP 192
+EVI S+S D+ ++Q++LSEKVP FVMNA++F A WRL+LVA P+++LLIIP
Sbjct: 137 AEVITSVSNDSLVVQDVLSEKVPNFVMNAAMFAGSYAVGFALLWRLTLVALPSVVLLIIP 196
Query: 193 GMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLG 252
G +YG+ L+ L+++ ++Y + AI EQA+SS +TVYSF AER + ++ A L+ + +LG
Sbjct: 197 GFMYGRILVGLARRIREQYTRPGAIAEQAVSSARTVYSFVAERTTMAQFSAALEESARLG 256
Query: 253 IKQGTAKGLAVGSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAXXXXXXXXXXXXXXXX 312
+KQG AKG+AVGS G++FAIWAF WYGS LVM+ G GG ++A
Sbjct: 257 LKQGLAKGIAVGSNGITFAIWAFNVWYGSRLVMYHGYQGGTVFAVSAAIVVGGLALGSGL 316
Query: 313 PELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIV 372
+KYF+EAS AA RI + I RVP+ID E G L V GE+EF +V+F YPSRP+S +
Sbjct: 317 SNVKYFSEASSAAERILEVIRRVPKIDSESDTGEELANVTGEVEFRNVEFCYPSRPESPI 376
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKWVRRE 432
FNL+V AG++VALVG SGSGKST IAL++RFYD L+LKW+R +
Sbjct: 377 FVSFNLRVPAGRTVALVGGSGSGKSTVIALLERFYDPSAGEVMVDGVDIRRLRLKWLRAQ 436
Query: 433 MGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIRQLPEGYETKVGERGA 492
MGLVSQE ALF TSI++NI+FGK +AT +EV+ HNFI QLP+GY+T+VGERG
Sbjct: 437 MGLVSQEPALFATSIRENILFGKEEATAEEVVAAAKAANAHNFISQLPQGYDTQVGERGV 496
Query: 493 LLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKL 552
+SGGQKQ K+P ILLLDEATSALD+ESE +VQ ALD AS+GRTT+V+AH+L
Sbjct: 497 QMSGGQKQRIAIARAILKSPKILLLDEATSALDTESERVVQEALDLASMGRTTIVIAHRL 556
Query: 553 STVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQFSCDDQETIPETHVSSV 612
ST+RNAD+IAV+ +G + E+G H++LI +G Y+ + +LQ+ ++ + I T +S
Sbjct: 557 STIRNADIIAVMQSGEVKELGPHDELIANDNGLYSSLVRLQQTRDSNEIDEIGVTGSTSA 616
Query: 613 TXXXXXXXXXXXXXPAIFASPLPVI-----DSPQPVTYLP-PSFFRLLSLNAPEWKQGLI 666
A +S + D LP PSF RLL LNAPEWKQ L+
Sbjct: 617 VGQSSSHSMSRRFSAASRSSSARSLGDARDDDNTEKPKLPVPSFRRLLMLNAPEWKQALM 676
Query: 667 GSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYXXXXXXXXXXXXAFNLLQH 726
GS SA+ G +QP YA +G MIS +F H+E++ + RTY N+ QH
Sbjct: 677 GSFSAVVFGGIQPAYAYAMGSMISVYFLTDHAEIKDKTRTYALIFVGLAVLSFLINIGQH 736
Query: 727 YNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVS 786
YNF MG LTKRIR +ML KILTFE WFD ++NSSGA+CS+L+ +A++V+SLV DR++
Sbjct: 737 YNFGAMGEYLTKRIREQMLAKILTFEIGWFDRDENSSGAICSQLAKDANVVRSLVGDRMA 796
Query: 787 LLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRST 846
L++QT SAV IA MGLV+AW+LA+VMIAVQPL I+CFY R+VLL S+S + AQ S+
Sbjct: 797 LVIQTISAVLIACTMGLVIAWRLALVMIAVQPLIIVCFYARRVLLKSMSKKSIHAQAESS 856
Query: 847 QIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMSWA 906
++A EAV N R +T+F S ++L++F+++Q+ PRK++ ++SW AG+G+G++ L +WA
Sbjct: 857 KLAAEAVSNLRTITAFSSQERILRLFEQSQDGPRKESIRQSWFAGLGLGTSMSLMTCTWA 916
Query: 907 LDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDR 966
LDFWYGG L+ + ISA ++F+TF ILVSTG+VIA+AGSMT+DLAKG+ AVASVF +LDR
Sbjct: 917 LDFWYGGRLMAEHHISAKELFQTFMILVSTGRVIADAGSMTTDLAKGADAVASVFAVLDR 976
Query: 967 QSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLV 1026
++ I D +G K +K+ G++++R VDFAYPSRPD ++ + F++ ++PG S LV
Sbjct: 977 ETEIDP-----DNPQGYKPEKLKGEVDIRGVDFAYPSRPDVIIFKGFTLSIQPGKSTALV 1031
Query: 1027 GKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRD 1086
G+SG GKST+IGLI+RFYD +GSV++DG D++ ++ R+H LVSQEP ++AG IR+
Sbjct: 1032 GQSGSGKSTIIGLIERFYDPIRGSVKIDGRDIKAYNLRALRRHIGLVSQEPTLFAGTIRE 1091
Query: 1087 NIVFGKLDXXXXXXXXXXXXXXXXXFISSLKDGYETECGERGVQLSGGXXXXXXXXXXXX 1146
NIV+G FIS+LKDGY+T CGERGVQLSGG
Sbjct: 1092 NIVYGTETASEAEIEDAARSANAHDFISNLKDGYDTWCGERGVQLSGGQKQRIAIARAIL 1151
Query: 1147 XNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRV 1206
NP ILLLDEATSALD QSE+VVQEALDR+M+GRT++VVAHRL+TI+ D I ++ G V
Sbjct: 1152 KNPAILLLDEATSALDSQSEKVVQEALDRVMIGRTSVVVAHRLSTIQNCDLITVLEKGTV 1211
Query: 1207 VERGTYAQLTH--MRGAFFNLATLQ 1229
VE+GT+A L + G +F+L LQ
Sbjct: 1212 VEKGTHASLMAKGLSGTYFSLVNLQ 1236
|
|
| TAIR|locus:2088897 ABCB15 "ATP-binding cassette B15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3046 (1077.3 bits), Expect = 1.1e-317, P = 1.1e-317
Identities = 598/1243 (48%), Positives = 843/1243 (67%)
Query: 5 KNKNN----IGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQS 60
+NK N + IF AD D LLM LG +GA+GDG +T +L+ S++MN++G G + +
Sbjct: 11 RNKMNCFGSVRSIFMHADGVDWLLMGLGLIGAVGDGFTTPLVLLITSKLMNNIG-GSSFN 69
Query: 61 QQNHHENFLDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQE 120
+ F+ + K S+ +Y+ VV FLEGYCW++T ERQ ++R KYL AVLRQ+
Sbjct: 70 T----DTFMQSISKNSVALLYVACGSWVVCFLEGYCWTRTGERQTARMREKYLRAVLRQD 125
Query: 121 VGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSL 180
VG+FD T+TS+VI S+S D+ +IQ++LSEK+P F+M+AS F+ WRL++
Sbjct: 126 VGYFDLH-VTSTSDVITSVSSDSFVIQDVLSEKLPNFLMSASTFVGSYIVGFILLWRLAI 184
Query: 181 VAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDR 240
V P ++LL+IPG++YG+ LI +S+K +EY +A + EQA+SS++TVY+FS ER+ I +
Sbjct: 185 VGLPFIVLLVIPGLMYGRALISISRKIREEYNEAGFVAEQAISSVRTVYAFSGERKTISK 244
Query: 241 YEAILDSTTKLGIKQGTAKGLAVGSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAXXXX 300
+ L + KLGIKQG AKG+ +GS G++FA+W F++WYGS +VM+ G GG ++A
Sbjct: 245 FSTALQGSVKLGIKQGLAKGITIGSNGITFAMWGFMSWYGSRMVMYHGAQGGTVFAVAAA 304
Query: 301 XXXXXXXXXXXXPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHV 360
LKYF EA+ RI + I+RVP+ID ++ G L+++RGE+EF++V
Sbjct: 305 IAIGGVSLGGGLSNLKYFFEAASVGERIMEVINRVPKIDSDNPDGHKLEKIRGEVEFKNV 364
Query: 361 KFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXX 420
KF YPSR ++ + DF L+V +GK+VALVG SGSGKST I+L+QRFYD
Sbjct: 365 KFVYPSRLETSIFDDFCLRVPSGKTVALVGGSGSGKSTVISLLQRFYDPLAGEILIDGVS 424
Query: 421 XXXLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIRQLP 480
LQ+KW+R +MGLVSQE ALF T+IK+NI+FGK DA+MD+V+ HNFI QLP
Sbjct: 425 IDKLQVKWLRSQMGLVSQEPALFATTIKENILFGKEDASMDDVVEAAKASNAHNFISQLP 484
Query: 481 EGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQAS 540
GYET+VGERG +SGGQKQ K+P ILLLDEATSALDSESE +VQ AL+ AS
Sbjct: 485 NGYETQVGERGVQMSGGQKQRIAIARAIIKSPTILLLDEATSALDSESERVVQEALENAS 544
Query: 541 LGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQFSCDD 600
+GRTT+++AH+LST+RNAD+I+VV NG +VE G+H++L+ IDG Y+ + LQ+ +
Sbjct: 545 IGRTTILIAHRLSTIRNADVISVVKNGHIVETGSHDELMENIDGQYSTLVHLQQ---IEK 601
Query: 601 QETIPETHVSSVTXXXXXXXXXXXXXPAIFASPLPVIDSPQPVTYL-----P--PSFFRL 653
Q+ + ++ +S + P + L P PSF RL
Sbjct: 602 QDINVSVKIGPISDPSKDIRNSSRVSTLSRSSSANSVTGPSTIKNLSEDNKPQLPSFKRL 661
Query: 654 LSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYXXXXXX 713
L++N PEWKQ L G +SA G++QP YA ++G M+S +F SH E++ + R Y
Sbjct: 662 LAMNLPEWKQALYGCISATLFGAIQPAYAYSLGSMVSVYFLTSHDEIKEKTRIYALSFVG 721
Query: 714 XXXXXXAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNE 773
N+ QHYNFAYMG LTKRIR RML K+LTFE WFD ++NSSGA+CSRL+ +
Sbjct: 722 LAVLSFLINISQHYNFAYMGEYLTKRIRERMLSKVLTFEVGWFDRDENSSGAICSRLAKD 781
Query: 774 ASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSS 833
A++V+SLV DR++L+VQT SAV IA MGLV+AW+LA+VMIAVQP+ I+CFYTR+VLL S
Sbjct: 782 ANVVRSLVGDRMALVVQTVSAVTIAFTMGLVIAWRLALVMIAVQPVIIVCFYTRRVLLKS 841
Query: 834 VSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIG 893
+S +KAQ+ S+++A EAV N R +T+F S +++++ ++AQE PR+++ ++SW AG G
Sbjct: 842 MSKKAIKAQDESSKLAAEAVSNVRTITAFSSQERIMKMLEKAQESPRRESIRQSWFAGFG 901
Query: 894 MGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKG 953
+ +Q LT +WALDFWYGG L+Q G I+A +F+TF ILVSTG+VIA+AGSMT+DLAKG
Sbjct: 902 LAMSQSLTSCTWALDFWYGGRLIQDGYITAKALFETFMILVSTGRVIADAGSMTTDLAKG 961
Query: 954 STAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQF 1013
S AV SVF +LDR + I G T ++I+G++E VDF+YP+RPD ++ + F
Sbjct: 962 SDAVGSVFAVLDRYTSIDPEDPDGYET-----ERITGQVEFLDVDFSYPTRPDVIIFKNF 1016
Query: 1014 SMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALV 1073
S++++ G S +VG SG GKST+IGLI+RFYD +G V++DG D+R + R+H ALV
Sbjct: 1017 SIKIEEGKSTAIVGPSGSGKSTIIGLIERFYDPLKGIVKIDGRDIRSYHLRSLRRHIALV 1076
Query: 1074 SQEPVIYAGNIRDNIVFG----KLDXXXXXXXXXXXXXXXXXFISSLKDGYETECGERGV 1129
SQEP ++AG IR+NI++G K+D FI+SL +GY+T CG+RGV
Sbjct: 1077 SQEPTLFAGTIRENIIYGGVSDKIDEAEIIEAAKAANAHD--FITSLTEGYDTYCGDRGV 1134
Query: 1130 QLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRL 1189
QLSGG NP++LLLDEATSALD QSE+VVQ+AL+R+M+GRT++V+AHRL
Sbjct: 1135 QLSGGQKQRIAIARAVLKNPSVLLLDEATSALDSQSERVVQDALERVMVGRTSVVIAHRL 1194
Query: 1190 NTIKKLDSIALVADGRVVERGTYAQLTHM--RGAFFNLATLQS 1230
+TI+ D+IA++ G++VERGT++ L G +F+L +LQ+
Sbjct: 1195 STIQNCDAIAVLDKGKLVERGTHSSLLSKGPTGIYFSLVSLQT 1237
|
|
| TAIR|locus:2088942 ABCB18 "ATP-binding cassette B18" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2944 (1041.4 bits), Expect = 7.9e-307, P = 7.9e-307
Identities = 580/1233 (47%), Positives = 821/1233 (66%)
Query: 5 KNKNNIGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNH 64
K+ +I IF AD D +LM LG +GA+GDG T + S+++N++G G +
Sbjct: 3 KSFGSIRSIFMHADGVDWMLMALGLIGAVGDGFITPIIFFICSKLLNNVG-GSSFDD--- 58
Query: 65 HENFLDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFF 124
E F+ V K ++ VY+ A V+ F+EGYCW++T ERQ K+R KYL+AVLRQ+VG+F
Sbjct: 59 -ETFMQTVAKNAVALVYVACASWVICFIEGYCWTRTGERQAAKMREKYLKAVLRQDVGYF 117
Query: 125 DSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFP 184
D T+TS+VI S+S D+ +IQ+ LSEK+P F+MN S F++ WRL++V FP
Sbjct: 118 DLH-VTSTSDVITSVSSDSLVIQDFLSEKLPNFLMNTSAFVASYIVGFLLLWRLTIVGFP 176
Query: 185 TLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAI 244
++LL+IPG++YG+ LI +S K +EY +A +I EQ +SS++TVY+F +E+++I+++
Sbjct: 177 FIILLLIPGLMYGRALIRISMKIREEYNEAGSIAEQVISSVRTVYAFGSEKKMIEKFSTA 236
Query: 245 LDSTTKLGIKQGTAKGLAVGSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAXXXXXXXX 304
L + KLG++QG AKG+A+GS G+++AIW FL WYGS +VM G GG + +
Sbjct: 237 LQGSVKLGLRQGLAKGIAIGSNGITYAIWGFLTWYGSRMVMNHGSKGGTVSSVIVCVTFG 296
Query: 305 XXXXXXXXPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSY 364
LKYF+EA + RI I+RVP ID ++ +G +L++ RGE+EF HVKF+Y
Sbjct: 297 GTSLGQSLSNLKYFSEAFVVGERIMKVINRVPGIDSDNLEGQILEKTRGEVEFNHVKFTY 356
Query: 365 PSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXL 424
PSRP++ + D L+V +GK+VALVG SGSGKST I+L+QRFYD L
Sbjct: 357 PSRPETPIFDDLCLRVPSGKTVALVGGSGSGKSTVISLLQRFYDPIAGEILIDGLPINKL 416
Query: 425 QLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIRQLPEGYE 484
Q+KW+R +MGLVSQE LF TSIK+NI+FGK DA+MDEV+ H+FI Q P Y+
Sbjct: 417 QVKWLRSQMGLVSQEPVLFATSIKENILFGKEDASMDEVVEAAKASNAHSFISQFPNSYQ 476
Query: 485 TKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQASLGRT 544
T+VGERG LSGGQKQ K+P+ILLLDEATSALDSESE +VQ ALD AS+GRT
Sbjct: 477 TQVGERGVQLSGGQKQRIAIARAIIKSPIILLLDEATSALDSESERVVQEALDNASIGRT 536
Query: 545 TLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQFSCD-DQET 603
T+V+AH+LST+RNAD+I VV NG ++E G+H +L+ ++DG Y + +LQ+ + + D +
Sbjct: 537 TIVIAHRLSTIRNADVICVVHNGRIIETGSHEELLEKLDGQYTSLVRLQQVDNKESDHIS 596
Query: 604 IPETHVSSVTXXXXXX-XXXXXXXPAIFASPLPVIDSPQPVTYLPPSFFRLLSLNAPEWK 662
+ E SS++ + P + SP+ L PSF RL+S+N PEWK
Sbjct: 597 VEEGQASSLSKDLKYSPKEFIHSTSSNIVRDFPNL-SPKDGKSLVPSFKRLMSMNRPEWK 655
Query: 663 QGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYXXXXXXXXXXXXAFN 722
L G L A G+VQP Y+ + G M+S +F SH +++ + R Y N
Sbjct: 656 HALYGCLGAALFGAVQPIYSYSSGSMVSVYFLASHDQIKEKTRIYVLLFVGLALFTFLSN 715
Query: 723 LLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVA 782
+ QHY FAYMG LTKRIR RML KILTFE WFD+++NSSGA+CSRL+ +A+MV+SLV
Sbjct: 716 ISQHYGFAYMGEYLTKRIRERMLGKILTFEVNWFDKDENSSGAICSRLAKDANMVRSLVG 775
Query: 783 DRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQ 842
DR+SLLVQT SAV+I +GLV++W+ ++VM++VQP+ ++CFYT++VLL S+S N +K Q
Sbjct: 776 DRMSLLVQTISAVSITCAIGLVISWRFSIVMMSVQPVIVVCFYTQRVLLKSMSRNAIKGQ 835
Query: 843 NRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTF 902
+ S+++A EAV N R +T+F S +++ + QE PRK + ++SWLAGI +G++Q L
Sbjct: 836 DESSKLAAEAVSNIRTITAFSSQERIINLLKMVQEGPRKDSARQSWLAGIMLGTSQSLIT 895
Query: 903 MSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFK 962
AL+FWYGG L+ G++ + + + F I STG+VIAEAG+MT DL KGS AVASVF
Sbjct: 896 CVSALNFWYGGKLIADGKMMSKEFLEIFLIFASTGRVIAEAGTMTKDLVKGSDAVASVFA 955
Query: 963 ILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTS 1022
+LDR + I + G + K+ G+I VDFAYP+RPD ++ + FS++++ G S
Sbjct: 956 VLDRNTTIEPENPDGYVPK-----KVKGQISFSNVDFAYPTRPDVIIFQNFSIDIEDGKS 1010
Query: 1023 VGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAG 1082
+VG SG GKST+I LI+RFYD +G V++DG D+R + R+H ALVSQEP ++AG
Sbjct: 1011 TAIVGPSGSGKSTIISLIERFYDPLKGIVKIDGRDIRSCHLRSLRQHIALVSQEPTLFAG 1070
Query: 1083 NIRDNIVFG----KLDXXXXXXXXXXXXXXXXXFISSLKDGYETECGERGVQLSGGXXXX 1138
IR+NI++G K+D FI+SL +GY+T CG+RGVQLSGG
Sbjct: 1071 TIRENIMYGGASNKIDESEIIEAAKAANAHD--FITSLSNGYDTCCGDRGVQLSGGQKQR 1128
Query: 1139 XXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSI 1198
NP++LLLDEATSALD QSE VVQ+AL+R+M+GRT++V+AHRL+TI+K D+I
Sbjct: 1129 IAIARAVLKNPSVLLLDEATSALDSQSESVVQDALERLMVGRTSVVIAHRLSTIQKCDTI 1188
Query: 1199 ALVADGRVVERGTYAQLTHM--RGAFFNLATLQ 1229
A++ +G VVE G ++ L +GA+F+L +LQ
Sbjct: 1189 AVLENGAVVECGNHSSLLAKGPKGAYFSLVSLQ 1221
|
|
| TAIR|locus:2088927 ABCB17 "ATP-binding cassette B17" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2888 (1021.7 bits), Expect = 6.8e-301, P = 6.8e-301
Identities = 579/1242 (46%), Positives = 822/1242 (66%)
Query: 3 REKNKN--NIGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQS 60
R+K K+ +I IF AD D +LM LG +GA+GDG T ++ + ++N+LG T S
Sbjct: 11 RDKMKSFGSIRSIFMHADGVDWILMALGLIGAVGDGFITPVVVFIFNTLLNNLG---TSS 67
Query: 61 QQNHHENFLDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQE 120
N + F+ + K + +Y+ V+ FLEGYCW++T ERQ ++R KYL AVLRQ+
Sbjct: 68 SNN--KTFMQTISKNVVALLYVACGSWVICFLEGYCWTRTGERQAARMREKYLRAVLRQD 125
Query: 121 VGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSL 180
VG+FD T+TS+VI SIS D+ +IQ+ LSEK+P F+MNAS F++ S WRL++
Sbjct: 126 VGYFDLH-VTSTSDVITSISSDSLVIQDFLSEKLPNFLMNASAFVASYIVSFILMWRLTI 184
Query: 181 VAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDR 240
V FP ++LL++PG++YG+ L+ +S+K +++Y +A +I EQA+SS++TVY+F +E ++I +
Sbjct: 185 VGFPFIILLLVPGLMYGRALVSISRKIHEQYNEAGSIAEQAISSVRTVYAFGSENKMIGK 244
Query: 241 YEAILDSTTKLGIKQGTAKGLAVGSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAXXXX 300
+ L + KLG++QG AKG+ +GS G++ AIWAFL WYGS LVM G GG ++
Sbjct: 245 FSTALRGSVKLGLRQGLAKGITIGSNGVTHAIWAFLTWYGSRLVMNHGSKGGTVFVVISC 304
Query: 301 XXXXXXXXXXXXPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHV 360
LKYF+EA +A RI + I RVP+ID +G +L+ ++GE+EF HV
Sbjct: 305 ITYGGVSLGQSLSNLKYFSEAFVAWERILEVIKRVPDIDSNKKEGQILERMKGEVEFNHV 364
Query: 361 KFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXX 420
KF+Y SRP++ + D LK+ AGK+VALVG SGSGKST I+L+QRFYD
Sbjct: 365 KFTYLSRPETTIFDDLCLKIPAGKTVALVGGSGSGKSTVISLLQRFYDPIAGEILIDGVS 424
Query: 421 XXXLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIRQLP 480
LQ+ W+R +MGLVSQE LF TSI +NI+FGK DA++DEV+ H FI Q P
Sbjct: 425 IDKLQVNWLRSQMGLVSQEPVLFATSITENILFGKEDASLDEVVEAAKASNAHTFISQFP 484
Query: 481 EGYETKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQAS 540
GY+T+VGERG +SGGQKQ K+P ILLLDEATSALDSESE +VQ +LD AS
Sbjct: 485 LGYKTQVGERGVQMSGGQKQRIAIARAIIKSPKILLLDEATSALDSESERVVQESLDNAS 544
Query: 541 LGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQR----QF 596
+GRTT+V+AH+LST+RNAD+I V+ NG +VE G+H +L+ RIDG Y + LQ+ +
Sbjct: 545 IGRTTIVIAHRLSTIRNADVICVIHNGQIVETGSHEELLKRIDGQYTSLVSLQQMENEES 604
Query: 597 SCDDQETIPETHVSSVTXXXXXXXXXX--XXXPAIFASPLPVIDSP-QPVTYLPPSFFRL 653
+ + ++ + V S++ +I + +I + QP L PSF RL
Sbjct: 605 NVNINVSVTKDQVMSLSKDFKYSQHNSIGSTSSSIVTNVSDLIPNDNQP---LVPSFTRL 661
Query: 654 LSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYXXXXXX 713
+ +N PEWK L G LSA VG +QP A + G +IS FF SH +++ + R Y
Sbjct: 662 MVMNRPEWKHALYGCLSAALVGVLQPVSAYSAGSVISVFFLTSHDQIKEKTRIYVLLFVG 721
Query: 714 XXXXXXAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNE 773
N+ QHY FAYMG LTKRIR +ML KILTFE WFD + NSSGA+CSRL+ +
Sbjct: 722 LAIFSFLVNISQHYGFAYMGEYLTKRIREQMLSKILTFEVNWFDIDDNSSGAICSRLAKD 781
Query: 774 ASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSS 833
A++V+S+V DR+SLLVQT SAV IA I+GLV+AW+LA+VMI+VQPL ++CFYT++VLL S
Sbjct: 782 ANVVRSMVGDRMSLLVQTISAVIIACIIGLVIAWRLAIVMISVQPLIVVCFYTQRVLLKS 841
Query: 834 VSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIG 893
+S KAQ+ S+++A EAV N R +T+F S +++++ + QE PR+++ +SWLAGI
Sbjct: 842 LSEKASKAQDESSKLAAEAVSNIRTITAFSSQERIIKLLKKVQEGPRRESVHRSWLAGIV 901
Query: 894 MGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKG 953
+G+++ L + AL+FWYGG L+ G+I + F+ F I V+TG+VIA+AG+MT+DLA+G
Sbjct: 902 LGTSRSLITCTSALNFWYGGRLIADGKIVSKAFFEIFLIFVTTGRVIADAGTMTTDLARG 961
Query: 954 STAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQF 1013
AV SVF +LDR + I + DG +KI G+I VDFAYP+RPD ++ F
Sbjct: 962 LDAVGSVFAVLDRCTTIEPKNP--DGYVA---EKIKGQITFLNVDFAYPTRPDVVIFENF 1016
Query: 1014 SMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALV 1073
S+E+ G S +VG SG GKST+IGLI+RFYD +G+V++DG D+R + RK+ +LV
Sbjct: 1017 SIEIDEGKSTAIVGTSGSGKSTIIGLIERFYDPLKGTVKIDGRDIRSYHLRSLRKYISLV 1076
Query: 1074 SQEPVIYAGNIRDNIVFG----KLDXXXXXXXXXXXXXXXXXFISSLKDGYETECGERGV 1129
SQEP+++AG IR+NI++G K+D FI+SL +GY+T CG++GV
Sbjct: 1077 SQEPMLFAGTIRENIMYGGTSDKIDESEIIEAAKAANAHD--FITSLSNGYDTNCGDKGV 1134
Query: 1130 QLSGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRL 1189
QLSGG NP++LLLDEATSALD +SE+VVQ+AL+R+M+GRT+I++AHRL
Sbjct: 1135 QLSGGQKQRIAIARAVLKNPSVLLLDEATSALDSKSERVVQDALERVMVGRTSIMIAHRL 1194
Query: 1190 NTIKKLDSIALVADGRVVERGTYAQLTHM--RGAFFNLATLQ 1229
+TI+ D I ++ G++VE GT++ L G +F+LA +Q
Sbjct: 1195 STIQNCDMIVVLGKGKIVESGTHSSLLEKGPTGTYFSLAGIQ 1236
|
|
| TAIR|locus:2088912 ABCB16 "ATP-binding cassette B16" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2870 (1015.3 bits), Expect = 5.5e-299, P = 5.5e-299
Identities = 574/1226 (46%), Positives = 810/1226 (66%)
Query: 13 IFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEV 72
IF AD D +LM LG +GA+GDG T L + ++N G S + E F+ +
Sbjct: 10 IFMHADGVDWMLMGLGLIGAVGDGFITPILFFITAMLLNDFG-----SFSFNDETFMQPI 64
Query: 73 EKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTT 132
K +L +Y+ A V+ FLEGYCW++T ERQ K+R +YL AVLRQ+VG+FD T+T
Sbjct: 65 SKNALAMLYVACASWVICFLEGYCWTRTGERQAAKMRERYLRAVLRQDVGYFDLH-VTST 123
Query: 133 SEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLIIP 192
S++I S+S D+ +IQ+ LSEK+P +MNAS F+ WRL++V FP ++LL+IP
Sbjct: 124 SDIITSVSSDSLVIQDFLSEKLPNILMNASAFVGSYIVGFMLLWRLTIVGFPFIILLLIP 183
Query: 193 GMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLG 252
G++YG+ LI +S+K +EY +A +I EQA+SS++TVY+F +E+++I+++ L + KLG
Sbjct: 184 GLMYGRALIGISRKIREEYNEAGSIAEQAISSVRTVYAFVSEKKMIEKFSDALQGSVKLG 243
Query: 253 IKQGTAKGLAVGSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAXXXXXXXXXXXXXXXX 312
++QG AKG+A+GS G+ +AIW FL WYGS +VM G GG +
Sbjct: 244 LRQGLAKGIAIGSNGIVYAIWGFLTWYGSRMVMNYGYKGGTVSTVTVCVTFGGTALGQAL 303
Query: 313 PELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIV 372
LKYF+EA +A RI I RVP+ID ++ G +L+ +RGE+EF +VK YPSRP++++
Sbjct: 304 SNLKYFSEAFVAGERIQKMIKRVPDIDSDNLNGHILETIRGEVEFNNVKCKYPSRPETLI 363
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKWVRRE 432
D LK+ +GK+VALVG SGSGKST I+L+QRFYD +Q+KW+R +
Sbjct: 364 FDDLCLKIPSGKTVALVGGSGSGKSTVISLLQRFYDPNEGDILIDSVSINNMQVKWLRSQ 423
Query: 433 MGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIRQLPEGYETKVGERGA 492
MG+VSQE +LF TSIK+NI+FGK DA+ DEV+ HNFI Q P GY+T+VGERG
Sbjct: 424 MGMVSQEPSLFATSIKENILFGKEDASFDEVVEAAKASNAHNFISQFPHGYQTQVGERGV 483
Query: 493 LLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKL 552
+SGGQKQ K+P+ILLLDEATSALD ESE +VQ ALD AS+GRTT+V+AH+L
Sbjct: 484 HMSGGQKQRIAIARALIKSPIILLLDEATSALDLESERVVQEALDNASVGRTTIVIAHRL 543
Query: 553 STVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQR---QFSCDDQET-IPETH 608
ST+RNAD+I V+ NGC+VE G+H+ L+ IDG Y + +LQ+ + SCD+ + E
Sbjct: 544 STIRNADIICVLHNGCIVETGSHDKLME-IDGKYTSLVRLQQMKNEESCDNTSVGVKEGR 602
Query: 609 VSSVTXXXXXXXXXXXXXPAIFASPLPVIDS-PQPVTYLPPSFFRLLSLNAPEWKQGLIG 667
VSS+ + + + DS PQ L PSF RL+++N PEWK L G
Sbjct: 603 VSSLRNDLDYNPRDLAHSMSS-SIVTNLSDSIPQDKKPLVPSFKRLMAMNRPEWKHALCG 661
Query: 668 SLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYXXXXXXXXXXXXAFNLLQHY 727
LSA G+VQP YA + G MIS FF +H +++ R Y ++ Q Y
Sbjct: 662 CLSASLGGAVQPIYAYSSGLMISVFFLTNHEQIKENTRIYVLLFFGLALFTFFTSISQQY 721
Query: 728 NFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSL 787
+F+YMG LTKRIR +ML KILTFE WFDEE+NSSGA+CSRL+ +A++V+SLV +R+SL
Sbjct: 722 SFSYMGEYLTKRIREQMLSKILTFEVNWFDEEENSSGAICSRLAKDANVVRSLVGERMSL 781
Query: 788 LVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQ 847
LVQT S V +A +GLV+AW+ +VMI+VQP+ I+C+Y ++VLL ++S + AQ+ S++
Sbjct: 782 LVQTISTVMVACTIGLVIAWRFTIVMISVQPVIIVCYYIQRVLLKNMSKKAIIAQDESSK 841
Query: 848 IAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMSWAL 907
+A EAV N R +T+F S +++++ + QE PR+++ ++SWLAGI +G+ Q L + AL
Sbjct: 842 LAAEAVSNIRTITTFSSQERIMKLLERVQEGPRRESARQSWLAGIMLGTTQSLITCTSAL 901
Query: 908 DFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQ 967
+FWYGG L+ G++ + F+ F I +TG+ IAEAG+MT+DLAKGS +V SVF +LDR+
Sbjct: 902 NFWYGGKLIADGKMVSKAFFELFLIFKTTGRAIAEAGTMTTDLAKGSNSVDSVFTVLDRR 961
Query: 968 SLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVG 1027
+ I + DG L+KI G+I VDFAYP+RP+ ++ FS+E+ G S +VG
Sbjct: 962 TTIEPENP--DGYI---LEKIKGQITFLNVDFAYPTRPNMVIFNNFSIEIHEGKSTAIVG 1016
Query: 1028 KSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDN 1087
S GKSTVIGLI+RFYD QG V++DG D+R + R+H +LVSQEP ++AG IR+N
Sbjct: 1017 PSRSGKSTVIGLIERFYDPLQGIVKIDGRDIRSYHLRSLRQHMSLVSQEPTLFAGTIREN 1076
Query: 1088 IVFGKLDXXXXXXXXXXXXXXXXX--FISSLKDGYETECGERGVQLSGGXXXXXXXXXXX 1145
I++G+ FI+SL DGY+T CG+RGVQLSGG
Sbjct: 1077 IMYGRASNKIDESEIIEAGKTANAHEFITSLSDGYDTYCGDRGVQLSGGQKQRIAIARTI 1136
Query: 1146 XXNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGR 1205
NP+ILLLDEATSALD QSE+VVQ+AL+ +M+G+T++V+AHRL+TI+ D+IA++ G+
Sbjct: 1137 LKNPSILLLDEATSALDSQSERVVQDALEHVMVGKTSVVIAHRLSTIQNCDTIAVLDKGK 1196
Query: 1206 VVERGTYAQLTHM--RGAFFNLATLQ 1229
VVE GT+A L G++F+L +LQ
Sbjct: 1197 VVESGTHASLLAKGPTGSYFSLVSLQ 1222
|
|
| TAIR|locus:504955759 ABCB22 "ATP-binding cassette B22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2831 (1001.6 bits), Expect = 7.5e-295, P = 7.5e-295
Identities = 561/1240 (45%), Positives = 821/1240 (66%)
Query: 5 KNKNNIGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNH 64
K+ ++ IF A+ D++LM LG +GA+GDG T + ++N +G
Sbjct: 2 KSFGSVRSIFMHANSVDLVLMGLGLIGAVGDGFITPIIFFITGLLLNDIG-----DSSFG 56
Query: 65 HENFLDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFF 124
+ F+ + K ++ +Y+ A +V+ F+EGYCW++T ERQ ++R KYL AVLRQ+VG+F
Sbjct: 57 DKTFMHAIMKNAVALLYVAGASLVICFVEGYCWTRTGERQASRMREKYLRAVLRQDVGYF 116
Query: 125 DSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFP 184
D T+TS+VI S+S DT +IQ++LSEK+P F+M+AS F++ WRL++V FP
Sbjct: 117 DLH-VTSTSDVITSVSSDTLVIQDVLSEKLPNFLMSASAFVASYIVGFIMLWRLTIVGFP 175
Query: 185 TLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAI 244
+LL+IPG++ G+ LI +S+K +EY +A +I EQA+S ++TVY+F +ER++I ++ A
Sbjct: 176 FFILLLIPGLMCGRALINISRKIREEYNEAGSIAEQAISLVRTVYAFGSERKMISKFSAA 235
Query: 245 LDSTTKLGIKQGTAKGLAVGSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAXXXXXXXX 304
L+ + KLG++QG AKG+A+GS G+++AIW F+ WYGS +VM+ G GG I+A
Sbjct: 236 LEGSVKLGLRQGIAKGIAIGSNGVTYAIWGFMTWYGSRMVMYHGAKGGTIFAVIICITYG 295
Query: 305 XXXXXXXXPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSY 364
LKYF+EA +A RI + I RVP+ID ++ +G VL+ ++GE++F+HVKF Y
Sbjct: 296 GTSLGRGLSNLKYFSEAVVAGERIIEVIKRVPDIDSDNPRGQVLENIKGEVQFKHVKFMY 355
Query: 365 PSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXL 424
SRP++ + D L++ +GKSVALVG SGSGKST I+L+QRFYD L
Sbjct: 356 SSRPETPIFDDLCLRIPSGKSVALVGGSGSGKSTVISLLQRFYDPIVGEILIDGVSIKKL 415
Query: 425 QLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIRQLPEGYE 484
Q+KW+R +MGLVSQE ALF TSI++NI+FGK DA+ DEV+ H+FI Q P GY+
Sbjct: 416 QVKWLRSQMGLVSQEPALFATSIEENILFGKEDASFDEVVEAAKSSNAHDFISQFPLGYK 475
Query: 485 TKVGERGALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQASLGRT 544
T+VGERG +SGGQKQ K+P +LLLDEATSALDSESE +VQ ALD A++GRT
Sbjct: 476 TQVGERGVQMSGGQKQRISIARAIIKSPTLLLLDEATSALDSESERVVQEALDNATIGRT 535
Query: 545 TLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQ---RQFSCDDQ 601
T+V+AH+LST+RN D+I V NG +VE G+H +L+ +DG Y + +LQ + S D+
Sbjct: 536 TIVIAHRLSTIRNVDVICVFKNGQIVETGSHEELMENVDGQYTSLVRLQIMENEESNDNV 595
Query: 602 E-TIPETHVSSVTXXXXXXXXXXXXX-PAIFASPLPVIDSPQPVTYLP----PSFFRLLS 655
++ E S+ ++FA+ ID+ + +P PSF RL++
Sbjct: 596 SVSMREGQFSNFNKDVKYSSRLSIQSRSSLFATSS--IDTNLAGS-IPKDKKPSFKRLMA 652
Query: 656 LNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYXXXXXXXX 715
+N PEWK L G LSA+ G++ P YA G M+S +F SH EM+ + R Y
Sbjct: 653 MNKPEWKHALYGCLSAVLYGALHPIYAYASGSMVSVYFLTSHDEMKEKTRIYVLLFVGLA 712
Query: 716 XXXXAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEAS 775
+++Q Y+FAYMG LTKRIR +L K+LTFE +WFDE++NSSG++CSRL+ +A+
Sbjct: 713 VLCFLISIIQQYSFAYMGEYLTKRIRENILSKLLTFEVSWFDEDENSSGSICSRLAKDAN 772
Query: 776 MVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVS 835
+V+SLV +RVSLLVQT SAV++A +GL ++WKL++VMIA+QP+ + CFYT++++L S+S
Sbjct: 773 VVRSLVGERVSLLVQTISAVSVACTLGLAISWKLSIVMIAIQPVVVGCFYTQRIVLKSIS 832
Query: 836 TNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMG 895
+KAQ+ S+++A EAV N R +T+F S ++L++ QE P+++ ++SWLAGI +
Sbjct: 833 KKAIKAQDESSKLAAEAVSNIRTITAFSSQERILKLLKMVQEGPQRENIRQSWLAGIVLA 892
Query: 896 SAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGST 955
+++ L + AL++WYG L+ G+I++ F+ F + VSTG+VIA+AG+MT DLAKGS
Sbjct: 893 TSRSLMTCTSALNYWYGARLIIDGKITSKAFFELFILFVSTGRVIADAGAMTMDLAKGSD 952
Query: 956 AVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSM 1015
AV SVF +LDR + I + DG Q I G+I+ VDFAYP+RPD ++ + FS+
Sbjct: 953 AVGSVFAVLDRYTNI--EPEKPDGFVP---QNIKGQIKFVNVDFAYPTRPDVIIFKNFSI 1007
Query: 1016 EVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQ 1075
++ G S +VG SG GKST+IGLI+RFYD +G V++DG D+R + R+H LVSQ
Sbjct: 1008 DIDEGKSTAIVGPSGSGKSTIIGLIERFYDPLKGIVKIDGRDIRSYHLRSLRQHIGLVSQ 1067
Query: 1076 EPVIYAGNIRDNIVFG----KLDXXXXXXXXXXXXXXXXXFISSLKDGYETECGERGVQL 1131
EP+++AG IR+NI++G K+D FI +L DGY+T CG+RGVQL
Sbjct: 1068 EPILFAGTIRENIMYGGASDKIDESEIIEAAKAANAHD--FIVTLSDGYDTYCGDRGVQL 1125
Query: 1132 SGGXXXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNT 1191
SGG NP++LLLDEATSALD QSE++VQ+AL R+M+GRT++V+AHRL+T
Sbjct: 1126 SGGQKQRIAIARAVLKNPSVLLLDEATSALDNQSERMVQDALGRLMVGRTSVVIAHRLST 1185
Query: 1192 IKKLDSIALVADGRVVERGTYAQLTHM--RGAFFNLATLQ 1229
I+ D+I ++ G+VVE GT++ L G +F+L +LQ
Sbjct: 1186 IQNCDTITVLDKGKVVECGTHSSLLAKGPTGVYFSLVSLQ 1225
|
|
| TAIR|locus:2090734 ABCB19 "ATP-binding cassette B19" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2263 (801.7 bits), Expect = 1.2e-234, P = 1.2e-234
Identities = 488/1235 (39%), Positives = 723/1235 (58%)
Query: 13 IFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEV 72
+F FAD+ D LLM +G++GAI G S + +++N GFG+ +Q + H+ + EV
Sbjct: 29 LFSFADKFDYLLMFVGSLGAIVHGSSMPVFFLLFGQMVN--GFGK--NQMDLHQ-MVHEV 83
Query: 73 EKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTT 132
+ SLYFVYLGL V ++ E CW + ERQV +R KYLEAVL+Q+VGFFD+ DA T
Sbjct: 84 SRYSLYFVYLGLVVCFSSYAEIACWMYSGERQVAALRKKYLEAVLKQDVGFFDT-DART- 141
Query: 133 SEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLIIP 192
+++ S+S DT L+Q+ +SEKV F+ S F++GL +W+L+L++ + +
Sbjct: 142 GDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWKLALLSVAVIPGIAFA 201
Query: 193 GMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLG 252
G +Y L ++ K+ + Y A I EQA++ ++TVYS+ E + ++ Y + T KLG
Sbjct: 202 GGLYAYTLTGITSKSRESYANAGVIAEQAIAQVRTVYSYVGESKALNAYSDAIQYTLKLG 261
Query: 253 IKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKGET-GGKIYAXXXXXXXXXXXXXX 310
K G AKGL +G T G++ WA + WY + G+T GGK +
Sbjct: 262 YKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIR-NGQTDGGKAFTAIFSAIVGGMSLGQ 320
Query: 311 XXPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDS 370
L F++ A ++ + I++ P I + G LD+V G IEF+ V FSYPSRPD
Sbjct: 321 SFSNLGAFSKGKAAGYKLMEIINQRPTIIQDPLDGKCLDQVHGNIEFKDVTFSYPSRPDV 380
Query: 371 IVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKWVR 430
++ ++FN+ +GK+VA+VG SGSGKST ++L++RFYD LQLK++R
Sbjct: 381 MIFRNFNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPNSGQILLDGVEIKTLQLKFLR 440
Query: 431 REMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIRQLPEGYETKVGER 490
++GLV+QE ALF T+I +NI++GK DATM EV H+FI LP+GY+T+VGER
Sbjct: 441 EQIGLVNQEPALFATTILENILYGKPDATMVEVEAAASAANAHSFITLLPKGYDTQVGER 500
Query: 491 GALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAH 550
G LSGGQKQ K+P ILLLDEATSALD+ SE++VQ ALD+ +GRTT+VVAH
Sbjct: 501 GVQLSGGQKQRIAIARAMLKDPKILLLDEATSALDASSESIVQEALDRVMVGRTTVVVAH 560
Query: 551 KLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQ-----RQFSCDDQETIP 605
+L T+RN D IAV+ G +VE GTH +LI + G YA + + Q R FS
Sbjct: 561 RLCTIRNVDSIAVIQQGQVVETGTHEELIAK-SGAYASLIRFQEMVGTRDFSNPSTRRTR 619
Query: 606 ETHVS-SVTXXXXXXXXXXXXXPAIFASP-----LPVIDSPQP--VTYLPPSFF-RLLSL 656
T +S S++ + S + +I + + T P ++F RLL L
Sbjct: 620 STRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMISNAETDRKTRAPENYFYRLLKL 679
Query: 657 NAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYXXXXXXXXX 716
N+PEW ++G++ +I G + PT+A+ + MI F+ + M+ + + Y
Sbjct: 680 NSPEWPYSIMGAVGSILSGFIGPTFAIVMSNMIEVFYYTDYDSMERKTKEYVFIYIGAGL 739
Query: 717 XXXAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASM 776
L+QHY F+ MG LT R+R ML IL E WFDE++++S + +RL+ +A+
Sbjct: 740 YAVGAYLIQHYFFSIMGENLTTRVRRMMLSAILRNEVGWFDEDEHNSSLIAARLATDAAD 799
Query: 777 VKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVST 836
VKS +A+R+S+++Q +++ + I+ +V W+++++++ PL +L + +++ L +
Sbjct: 800 VKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILGTFPLLVLANFAQQLSLKGFAG 859
Query: 837 NFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGS 896
+ KA +++ IA E V N R V +F + K+L +F P+K++ +S +G G
Sbjct: 860 DTAKAHAKTSMIAGEGVSNIRTVAAFNAQSKILSLFCHELRVPQKRSLYRSQTSGFLFGL 919
Query: 897 AQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTA 956
+Q + S AL WYG LV KG + V K F +LV T +AE S+ ++ +G A
Sbjct: 920 SQLALYGSEALILWYGAHLVSKGVSTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEA 979
Query: 957 VASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSME 1016
V SVF +LDRQ+ I D ++ I G IE R VDFAYPSRPD +V R F++
Sbjct: 980 VGSVFSVLDRQTRIDPDDADAD-----PVETIRGDIEFRHVDFAYPSRPDVMVFRDFNLR 1034
Query: 1017 VKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQE 1076
++ G S LVG SG GKS+VI +I+RFYD G V +DG D+R L++ R LV QE
Sbjct: 1035 IRAGHSQALVGASGSGKSSVIAMIERFYDPLAGKVMIDGKDIRRLNLKSLRLKIGLVQQE 1094
Query: 1077 PVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXXXFISSLKDGYETECGERGVQLSGGXX 1136
P ++A I DNI +GK FIS L +GY+T GERGVQLSGG
Sbjct: 1095 PALFAATIFDNIAYGKDGATESEVIDAARAANAHGFISGLPEGYKTPVGERGVQLSGGQK 1154
Query: 1137 XXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLD 1196
NPT+LLLDEATSALD +SE V+QEAL+R+M GRTT+VVAHRL+TI+ +D
Sbjct: 1155 QRIAIARAVLKNPTVLLLDEATSALDAESECVLQEALERLMRGRTTVVVAHRLSTIRGVD 1214
Query: 1197 SIALVADGRVVERGTYAQL-THMRGAFFNLATLQS 1230
I ++ DGR+VE+G++++L + GA+ L LQ+
Sbjct: 1215 CIGVIQDGRIVEQGSHSELVSRPEGAYSRLLQLQT 1249
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| UNIPROTKB|Q0JCP1 Os04g0459000 "Os04g0459000 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2247 (796.0 bits), Expect = 5.7e-233, P = 5.7e-233
Identities = 490/1235 (39%), Positives = 709/1235 (57%)
Query: 13 IFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEV 72
+F FAD D LLM G+ GA+ G + + ++N GFG+ Q DEV
Sbjct: 34 LFGFADPLDWLLMAAGSAGAVVHGAAMPVFFLLFGELIN--GFGKNQHSLRR---MTDEV 88
Query: 73 EKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTT 132
K SLYFVYLGL V ++LE CW T ERQV +R +YLEAVLRQ+VGFFD+ DA T
Sbjct: 89 SKYSLYFVYLGLVVCASSYLEIACWMYTGERQVGALRRRYLEAVLRQDVGFFDT-DART- 146
Query: 133 SEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLIIP 192
+V+ S+S DT L+Q+ + EKV F+ S F++GL +WRL+L++ + +
Sbjct: 147 GDVVFSVSTDTLLVQDAIGEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFA 206
Query: 193 GMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLG 252
G +Y L L+ K+ Y A I EQA++ ++TVYS+ E + ++ Y + +T KLG
Sbjct: 207 GGLYAYTLTGLTSKSRDSYANAGIIAEQAIAQVRTVYSYVGESKALNSYSEAIQNTLKLG 266
Query: 253 IKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKGET-GGKIYAXXXXXXXXXXXXXX 310
K G AKGL +G T G++ WA + WY + G+T GGK +
Sbjct: 267 YKAGMAKGLGIGCTYGIACMSWALVFWYAGVFIR-NGQTDGGKAFTAIFSAIVGGLSLGQ 325
Query: 311 XXPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDS 370
L F++ IA ++ + I + P I + G LDEV G IEF+ V FSYPSRPD
Sbjct: 326 SFSNLGAFSKGKIAGYKLLEVIRQRPTIVQDPADGRCLDEVHGNIEFKEVAFSYPSRPDV 385
Query: 371 IVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKWVR 430
++ +DF+L AGK+ A+VG SGSGKST +AL++RFYD LQLKW+R
Sbjct: 386 MIFRDFSLFFPAGKTAAVVGGSGSGKSTVVALIERFYDPNQGQVLLDNVDIKTLQLKWLR 445
Query: 431 REMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIRQLPEGYETKVGER 490
++GLV+QE ALF T+I +NI++GK DATM EV H+FI LP GY T+VGER
Sbjct: 446 DQIGLVNQEPALFATTILENILYGKPDATMAEVEAAATSANAHSFIALLPNGYNTQVGER 505
Query: 491 GALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAH 550
G LSGGQKQ KNP ILLLDEATSALD+ SE +VQ ALD+ +GRTT+VVAH
Sbjct: 506 GLQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSENIVQEALDRLMVGRTTVVVAH 565
Query: 551 KLSTVRNADLIAVVDNGCLVEIGTHNDLINR-IDGHYAKMAKLQ-----RQFSCDDQETI 604
+LST+R D+IAV+ G +VE GTH++L+ + G YA + + Q R F
Sbjct: 566 RLSTIRCVDMIAVIQQGQVVETGTHDELLAKGSSGAYAALIRFQEMARNRDFRGPSTRKS 625
Query: 605 PETHVSSVTXXXXXXXXXXXXXPAIFASPLP-------VIDSPQPVTYLPPS--FFRLLS 655
+ +S+ ++ V ++ Y P FF+LL
Sbjct: 626 RSSRLSNSLSTRSLSLRSGSLRNLSYSYSTGADGRIEMVSNADNDRKYPAPKGYFFKLLK 685
Query: 656 LNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYXXXXXXXX 715
LNAPEW ++G++ +I G + PT+A+ + MI F+ + + M+ + R Y
Sbjct: 686 LNAPEWPYTILGAIGSILSGFIGPTFAIVMSNMIEVFYFRDPNAMERKTREYVFIYIGTG 745
Query: 716 XXXXAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEAS 775
L+QHY F+ MG LT R+R ML IL + WFD+E+N+S + +RLS +A+
Sbjct: 746 LYAVVAYLVQHYFFSIMGENLTTRVRRMMLAAILRNDVGWFDQEENNSSLVAARLSTDAA 805
Query: 776 MVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVS 835
VKS +A+R+S+++Q +++ ++ ++G ++ W++AV+++ PL +L + +++ + +
Sbjct: 806 DVKSAIAERISVILQNMTSLLVSFVVGFIIEWRVAVLILVTFPLLVLANFAQQLSMKGFA 865
Query: 836 TNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMG 895
+ KA +++ IA E V N R V +F + KVL +F P+ + ++S ++G G
Sbjct: 866 GDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKVLSLFCTELRVPQMHSLRRSQISGALFG 925
Query: 896 SAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGST 955
+Q + S AL WYG LV+ + V K F +LV T +AE S+ ++ +G
Sbjct: 926 LSQLSLYASEALILWYGAHLVRHHVSTFSKVIKVFVVLVITANTVAETVSLAPEIVRGGE 985
Query: 956 AVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSM 1015
++ SVF IL+ ++ I D ++ + G I+ R VDFAYPSRPD +V + FS+
Sbjct: 986 SIRSVFAILNYRTRIDP-----DEPETEPVESVRGDIDFRHVDFAYPSRPDVMVFKDFSL 1040
Query: 1016 EVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQ 1075
++ G S LVG SG GKSTVI LI+RFYD G V +DG D+R L+V R LV Q
Sbjct: 1041 RIRAGQSQALVGASGSGKSTVIALIERFYDPLAGKVMIDGKDIRRLNVRSLRLKIGLVQQ 1100
Query: 1076 EPVIYAGNIRDNIVFGKLDXXXXXXXXXXXXXXXXXFISSLKDGYETECGERGVQLSGGX 1135
EPV++A +I +NI +GK F+S+L +GY+T GERGVQLSGG
Sbjct: 1101 EPVLFATSIFENIAYGKDGATEEEVIEAAKVANMHGFVSALPEGYKTPVGERGVQLSGGQ 1160
Query: 1136 XXXXXXXXXXXXNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKL 1195
+P +LLLDEATSALD +SE V+QEAL+RIM GRT ++VAHRL+TI+ +
Sbjct: 1161 KQRIAIARAVLKDPAVLLLDEATSALDAESECVLQEALERIMKGRTAVLVAHRLSTIRGV 1220
Query: 1196 DSIALVADGRVVERGTYAQL-THMRGAFFNLATLQ 1229
DSIA+V DGRVVE+G++ +L + GA+ L LQ
Sbjct: 1221 DSIAVVQDGRVVEQGSHGELVSRPDGAYSRLLQLQ 1255
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| TAIR|locus:2057961 ABCB1 "ATP-binding cassette B1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1170 (416.9 bits), Expect = 5.3e-230, Sum P(2) = 5.3e-230
Identities = 250/583 (42%), Positives = 354/583 (60%)
Query: 13 IFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEV 72
+FRFAD D +LM +G+VGA G S L F + ++NS G S N+ E ++EV
Sbjct: 32 LFRFADGLDYVLMGIGSVGAFVHGCSLPLFLRFFADLVNSFG-----SNSNNVEKMMEEV 86
Query: 73 EKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTT 132
K +LYF+ +G A+ ++ E CW + ERQ K+R KYLEA L Q++ FFD++ T
Sbjct: 87 LKYALYFLVVGAAIWASSWAEISCWMWSGERQTTKMRIKYLEAALNQDIQFFDTE--VRT 144
Query: 133 SEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLIIP 192
S+V+ +I+ D ++Q+ +SEK+ F+ + F+SG W+L+LV + L+ +
Sbjct: 145 SDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFIVGFTAVWQLALVTLAVVPLIAVI 204
Query: 193 GMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLG 252
G I+ L LS K+ + +A IVEQ + I+ V +F E R Y + L KLG
Sbjct: 205 GGIHTTTLSKLSNKSQESLSQAGNIVEQTVVQIRVVMAFVGESRASQAYSSALKIAQKLG 264
Query: 253 IKQGTAKGLAVGSTG-LSFAIWAFLAWYGSHLVMFKGETGGKIYAXXXXXXXXXXXXXXX 311
K G AKG+ +G+T + F +A L WYG +LV GG A
Sbjct: 265 YKTGLAKGMGLGATYFVVFCCYALLLWYGGYLVRHHLTNGGLAIATMFAVMIGGLALGQS 324
Query: 312 XPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSI 371
P + F +A +AA++IF ID P I+ G+ LD V G +E ++V FSYPSRPD
Sbjct: 325 APSMAAFAKAKVAAAKIFRIIDHKPTIERNSESGVELDSVTGLVELKNVDFSYPSRPDVK 384
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAXXXXXXXXXXXXXXLQLKWVRR 431
+L +F L V AGK++ALVG+SGSGKST ++L++RFYD L+L+W+R+
Sbjct: 385 ILNNFCLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPNSGQVLLDGQDLKTLKLRWLRQ 444
Query: 432 EMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIXXXXXXXXHNFIRQLPEGYETKVGERG 491
++GLVSQE ALF TSIK+NI+ G+ DA E+ H+FI +LP+G++T+VGERG
Sbjct: 445 QIGLVSQEPALFATSIKENILLGRPDADQVEIEEAARVANAHSFIIKLPDGFDTQVGERG 504
Query: 492 ALLSGGQKQXXXXXXXXXKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHK 551
LSGGQKQ KNP ILLLDEATSALDSESE LVQ ALD+ +GRTTL++AH+
Sbjct: 505 LQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLIIAHR 564
Query: 552 LSTVRNADLIAVVDNGCLVEIGTHNDLINRID-GHYAKMAKLQ 593
LST+R ADL+AV+ G + EIGTH++L ++ + G YAK+ K+Q
Sbjct: 565 LSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQ 607
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LHK4 | AB8B_ARATH | No assigned EC number | 0.6553 | 0.9796 | 0.9709 | yes | no |
| P21449 | MDR2_CRIGR | 3, ., 6, ., 3, ., 4, 4 | 0.3763 | 0.9788 | 0.9435 | yes | no |
| Q9LHD1 | AB15B_ARATH | No assigned EC number | 0.5197 | 0.9837 | 0.9758 | yes | no |
| P21447 | MDR1A_MOUSE | 3, ., 6, ., 3, ., 4, 4 | 0.3755 | 0.9780 | 0.9427 | yes | no |
| Q8T9W4 | ABCB3_DICDI | No assigned EC number | 0.3784 | 0.9691 | 0.8324 | yes | no |
| P21439 | MDR3_HUMAN | 3, ., 6, ., 3, ., 4, 4 | 0.3815 | 0.9878 | 0.9447 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | LOW CONFIDENCE prediction! |
| 3rd Layer | 2.7.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.XVIII.2596.1 | multidrug/pheromone exporter, MDR family, ABC transporter family (1205 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1230 | |||
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-131 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-131 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-130 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-128 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-126 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-119 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-116 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-112 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-111 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-108 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-108 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-107 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-101 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-101 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 8e-97 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 3e-94 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 1e-91 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-91 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-89 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 8e-88 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 3e-85 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-83 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-82 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-81 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 5e-80 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 9e-80 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-78 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-77 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-77 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-72 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 9e-72 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-71 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-70 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-69 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-67 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-66 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 6e-66 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-65 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 3e-65 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 4e-65 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-64 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 3e-64 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-63 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-62 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-62 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-61 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 7e-61 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-60 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-58 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 4e-58 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 7e-57 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-56 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 9e-56 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 3e-55 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 7e-54 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-53 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 4e-52 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 9e-52 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-51 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-51 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 6e-51 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 8e-50 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 4e-49 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-49 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 6e-49 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-48 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-47 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-46 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 4e-46 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-45 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 9e-44 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-41 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 5e-41 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 8e-41 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-40 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 6e-40 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 1e-39 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-39 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-39 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-39 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 7e-39 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-38 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-38 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-38 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 5e-38 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 5e-38 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 7e-38 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 8e-38 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-37 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-37 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 7e-37 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-36 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 3e-36 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-36 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 7e-36 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-35 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-35 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 6e-35 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 6e-35 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 8e-35 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 8e-35 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-34 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-34 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-34 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-34 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-34 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-34 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 4e-34 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 4e-34 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-34 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 6e-34 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 7e-34 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 9e-34 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 9e-34 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-33 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 4e-33 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 5e-33 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 5e-33 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 6e-33 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 6e-33 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 7e-33 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-32 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-32 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-32 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-32 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 3e-32 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 4e-32 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 7e-32 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 7e-32 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-31 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-31 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-31 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-31 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 4e-31 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 8e-31 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 9e-31 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 1e-30 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-30 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-30 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-30 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-30 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 3e-30 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 3e-30 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 4e-30 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 4e-30 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 9e-30 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 9e-30 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 9e-30 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 9e-30 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-29 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-29 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-29 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-29 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 3e-29 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-29 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 7e-29 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 7e-29 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 9e-29 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-28 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-28 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-28 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-28 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 4e-28 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 5e-28 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 6e-28 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 6e-28 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 7e-28 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 1e-27 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 2e-27 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-27 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 3e-27 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-27 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 4e-27 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 4e-27 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 6e-27 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 8e-27 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 8e-27 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 1e-26 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-26 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-26 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-26 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-26 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-26 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-26 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 3e-26 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 3e-26 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-25 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-25 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-25 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-25 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-25 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-25 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-25 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 3e-25 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-25 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 4e-25 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 4e-25 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 4e-25 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 4e-25 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 4e-25 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 4e-25 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 4e-25 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 5e-25 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 6e-25 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 8e-25 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 9e-25 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 9e-25 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-24 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-24 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-24 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-24 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-24 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-24 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-24 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-24 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-24 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-24 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-24 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 3e-24 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-24 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 3e-24 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-24 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 4e-24 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 4e-24 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 5e-24 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 5e-24 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 6e-24 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 6e-24 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 7e-24 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 8e-24 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 8e-24 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 9e-24 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-23 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-23 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-23 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-23 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-23 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-23 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-23 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-23 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-23 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-23 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-23 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 3e-23 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 4e-23 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 4e-23 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 4e-23 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 4e-23 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 4e-23 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 5e-23 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 5e-23 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 5e-23 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 5e-23 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 7e-23 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 7e-23 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 7e-23 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 7e-23 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 8e-23 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-22 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-22 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 1e-22 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-22 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-22 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-22 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-22 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-22 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 2e-22 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 3e-22 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-22 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 4e-22 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 4e-22 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 5e-22 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 5e-22 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 7e-22 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 8e-22 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 8e-22 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 8e-22 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-21 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-21 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 1e-21 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-21 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-21 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-21 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-21 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 2e-21 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 2e-21 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-21 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-21 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-21 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 2e-21 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-21 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-21 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-21 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 3e-21 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 3e-21 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 3e-21 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 3e-21 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 4e-21 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 4e-21 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 5e-21 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 5e-21 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 6e-21 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 8e-21 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 8e-21 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 8e-21 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 9e-21 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 9e-21 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-20 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 1e-20 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 1e-20 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-20 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-20 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-20 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-20 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-20 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-20 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 3e-20 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 3e-20 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 3e-20 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 4e-20 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 4e-20 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 4e-20 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 5e-20 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 5e-20 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 6e-20 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 6e-20 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 7e-20 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 8e-20 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 9e-20 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-19 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 1e-19 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-19 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-19 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-19 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-19 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-19 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-19 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-19 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-19 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-19 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-19 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-19 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-19 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-19 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-19 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-19 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 3e-19 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 3e-19 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 3e-19 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-19 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 5e-19 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 5e-19 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-19 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 6e-19 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 6e-19 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 7e-19 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 8e-19 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 8e-19 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 8e-19 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 8e-19 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 9e-19 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-18 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-18 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-18 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-18 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 1e-18 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-18 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-18 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 1e-18 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-18 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 1e-18 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 1e-18 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 2e-18 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 2e-18 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-18 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 3e-18 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 3e-18 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-18 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 3e-18 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 4e-18 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 4e-18 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 4e-18 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 4e-18 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 4e-18 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 4e-18 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 5e-18 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 5e-18 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 5e-18 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 5e-18 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 6e-18 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 6e-18 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 6e-18 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 6e-18 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 6e-18 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 7e-18 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 7e-18 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 7e-18 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 8e-18 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 8e-18 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-17 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-17 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-17 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-17 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 1e-17 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-17 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-17 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-17 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-17 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-17 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-17 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-17 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-17 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-17 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-17 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 3e-17 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 3e-17 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 3e-17 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-17 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 3e-17 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 3e-17 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-17 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 3e-17 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 3e-17 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 4e-17 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 4e-17 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 4e-17 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 4e-17 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 4e-17 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 5e-17 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 6e-17 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 6e-17 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 6e-17 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 7e-17 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 7e-17 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 7e-17 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 7e-17 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 8e-17 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 9e-17 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-16 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-16 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 1e-16 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-16 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-16 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-16 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-16 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-16 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-16 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-16 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-16 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-16 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-16 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-16 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-16 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-16 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 3e-16 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 4e-16 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-16 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 5e-16 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 5e-16 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 5e-16 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 7e-16 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 7e-16 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 8e-16 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-15 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-15 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-15 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-15 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-15 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-15 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-15 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-15 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 3e-15 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-15 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-15 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 3e-15 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-15 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 5e-15 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 6e-15 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 6e-15 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 8e-15 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 8e-15 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 8e-15 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-14 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-14 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 1e-14 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-14 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 1e-14 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 1e-14 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-14 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 1e-14 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-14 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-14 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-14 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-14 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-14 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 3e-14 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 3e-14 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 5e-14 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 5e-14 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 5e-14 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 5e-14 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 5e-14 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 6e-14 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 6e-14 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 7e-14 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-13 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-13 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-13 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-13 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-13 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-13 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 2e-13 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-13 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 3e-13 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 3e-13 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 3e-13 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-13 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 3e-13 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 4e-13 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 5e-13 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 5e-13 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 5e-13 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 5e-13 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 5e-13 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 5e-13 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 6e-13 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 8e-13 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-12 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-12 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 1e-12 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-12 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 1e-12 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-12 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-12 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-12 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-12 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-12 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-12 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-12 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 2e-12 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-12 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-12 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-12 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 3e-12 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 3e-12 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 3e-12 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 3e-12 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 4e-12 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 5e-12 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 7e-12 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 8e-12 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 9e-12 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-11 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 1e-11 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 1e-11 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 2e-11 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-11 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 2e-11 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-11 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 3e-11 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 3e-11 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-11 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 4e-11 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 5e-11 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 5e-11 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 5e-11 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 6e-11 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 7e-11 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 8e-11 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 9e-11 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 9e-11 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-10 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 1e-10 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-10 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 1e-10 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-10 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-10 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 2e-10 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 2e-10 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-10 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-10 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-10 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-10 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 3e-10 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-10 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 3e-10 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 3e-10 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 5e-10 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 5e-10 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 7e-10 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-09 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-09 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-09 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-09 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-09 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-09 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-09 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-09 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-09 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-09 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 3e-09 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 3e-09 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 3e-09 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 3e-09 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-09 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 4e-09 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 4e-09 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 6e-09 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 6e-09 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 7e-09 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 7e-09 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 7e-09 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 9e-09 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 9e-09 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-08 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-08 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-08 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-08 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 1e-08 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 1e-08 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-08 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 2e-08 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 3e-08 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 3e-08 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-08 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 4e-08 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 4e-08 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 5e-08 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 5e-08 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 6e-08 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 6e-08 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 6e-08 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 8e-08 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 8e-08 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 8e-08 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 9e-08 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-07 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-07 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 1e-07 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 1e-07 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 2e-07 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 2e-07 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-07 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-07 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 3e-07 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 3e-07 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 4e-07 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 4e-07 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 5e-07 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 5e-07 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 6e-07 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 7e-07 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 7e-07 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 8e-07 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-06 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 1e-06 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-06 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 1e-06 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-06 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 2e-06 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 3e-06 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 3e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 4e-06 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 4e-06 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 4e-06 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 4e-06 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 4e-06 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 5e-06 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 5e-06 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 5e-06 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 6e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 7e-06 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 9e-06 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 1e-05 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 1e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-05 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-05 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 1e-05 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 2e-05 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-05 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 2e-05 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 3e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 4e-05 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 5e-05 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 6e-05 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 6e-05 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 7e-05 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 8e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 9e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 9e-05 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 1e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 1e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-04 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 1e-04 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 1e-04 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 3e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 3e-04 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 3e-04 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 3e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-04 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 4e-04 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 4e-04 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 5e-04 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 6e-04 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 6e-04 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 6e-04 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 7e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 8e-04 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 9e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 0.001 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 0.001 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 0.001 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 0.001 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 0.001 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 0.002 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 0.002 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 0.002 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 0.002 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 0.002 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.002 | |
| cd03270 | 226 | cd03270, ABC_UvrA_I, ATP-binding cassette domain I | 0.002 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 0.003 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 0.003 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 0.003 | |
| cd03270 | 226 | cd03270, ABC_UvrA_I, ATP-binding cassette domain I | 0.003 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 418 bits (1076), Expect = e-131
Identities = 199/511 (38%), Positives = 297/511 (58%), Gaps = 16/511 (3%)
Query: 82 LGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISK 141
L +A V A L G ++ T R ++IR ++LRQ++GFFD T E+ + +S
Sbjct: 210 LSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFD---ENKTGELTSRLSS 266
Query: 142 DTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLI 201
DT + LS V + + N + + L F + S RL++V L L+ + ++GK
Sbjct: 267 DTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQ 326
Query: 202 YLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLGIKQGTAKGL 261
LS++ + KAN + E+ALS ++TV SF+AE R++ L+ T +L ++ A
Sbjct: 327 LLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAG 386
Query: 262 AVGSTGLS-FAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYF-- 318
+ +T + I + +YG LV+ + G + +SF+L LG A+ L Y
Sbjct: 387 YLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNL----VSFLLYQEQLGEAVRVLSYVYS 442
Query: 319 --TEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDF 376
+A A+ ++F+ +DR P I T L + G IEF+ V FSYP+RPD VLK
Sbjct: 443 GMMQAVGASEKVFEYLDRKPNI--PLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGL 500
Query: 377 NLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLV 436
+ G+ VALVG SGSGKST AL+Q Y G V +DGV + + ++ R++ LV
Sbjct: 501 TFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALV 560
Query: 437 SQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSG 496
QE LF S+++NI +G D +E++AAA AANAH+FI + P GY+T+VGE+G+ LSG
Sbjct: 561 GQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSG 620
Query: 497 GQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVR 556
GQKQRIAIARA+++ P +L+LDEATSALD+E E L+Q + +AS RT L++AH+LSTV
Sbjct: 621 GQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRAS--RTVLLIAHRLSTVE 678
Query: 557 NADLIAVVDNGCLVEIGTHNDLINRIDGHYA 587
AD I V+ G +VE+GTH L+ +
Sbjct: 679 RADQILVLKKGSVVEMGTHKQLMEDQGCYKH 709
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 399 bits (1029), Expect = e-131
Identities = 148/239 (61%), Positives = 189/239 (79%), Gaps = 1/239 (0%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
IEF++V F YPSRPD +LK +L + GK+VALVG+SG GKST ++L++RFYD G +
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHN 474
+DGVDIR L L+W+R ++GLVSQE LF +I +NI +GK DAT +EV AA AN H+
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 475 FIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQN 534
FI LP+GY+T VGERG+ LSGGQKQRIAIARA+++NP ILLLDEATSALD+ESE LVQ
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 535 ALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQ 593
ALD+A GRTT+V+AH+LST+RNADLIAV+ NG +VE GTH++L+ + G YAK+ K Q
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ-KGVYAKLVKAQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 411 bits (1057), Expect = e-130
Identities = 206/595 (34%), Positives = 327/595 (54%), Gaps = 33/595 (5%)
Query: 7 KNNIGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHE 66
+ + + ++ +LL +L + + +S L + RI+++L
Sbjct: 1 LSLLRRLLKYLKYKLLLLAILLLL--LSALLSL-LLPLLIGRIIDALLAD---------- 47
Query: 67 NFLDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDS 126
L E+ + L + L L V+ L+ Y S+ ++ V +R E +LR + FFD
Sbjct: 48 --LGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDK 105
Query: 127 QDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTL 186
+ ++I+ ++ D + L+S + + + + I L SWRL+L+ L
Sbjct: 106 AK---SGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLIL 162
Query: 187 LLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILD 246
LL + + + LS++ + G+ NA + ++LS I+ + +F AE R + R+E +
Sbjct: 163 PLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANE 222
Query: 247 STTKLGIKQGTAKGLAVGSTGLSFAI-WAFLAWYGSHLVMFKGETGGKIYAAGISFILSG 305
+ ++ + L L ++ + G LV+ T G + +FIL
Sbjct: 223 ELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGAL----AAFILYL 278
Query: 306 LSLGSALPELKY----FTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVK 361
L L + + +L AS AA R+F+ +D PE++ L + G IEFE+V
Sbjct: 279 LRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP---LKDTIGSIEFENVS 335
Query: 362 FSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDI 421
FSYP VLKD + ++ G+ VA+VG SGSGKST I L+ R YD G + IDG+DI
Sbjct: 336 FSYP--GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDI 393
Query: 422 RRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPE 481
R + L +R+ +G+VSQ+ LF +I++NI G+ DAT +E+ A ANAH FI LP+
Sbjct: 394 RDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPD 453
Query: 482 GYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASL 541
GY+T VGERG LSGGQ+QR+AIARA+++NP IL+LDEATSALD+E+E L+Q+AL +
Sbjct: 454 GYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK 513
Query: 542 GRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQF 596
GRTTL++AH+LST++NAD I V+DNG +VE GTH +L+ + G YA++ + Q
Sbjct: 514 GRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQAQGGA 567
|
Length = 567 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 392 bits (1009), Expect = e-128
Identities = 138/238 (57%), Positives = 181/238 (76%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
IE + V F YPSRPD +L+ S+ + PG +V LVG SGCGKSTV+ L++RFYD G +
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHE 1111
+DG+D+R+L++ W R LVSQEPV++ G I +NI +GK DA++ EV EAA+ AN H+
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 1112 FISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQE 1171
FI SL DGY+T GERG QLSGGQ+QRIAIARA++RNP ILLLDEATSALD +SE++VQE
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 1172 ALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLATLQ 1229
ALDR M GRTTIV+AHRL+TI+ D IA++ +G+VVE+GT+ +L +G + L Q
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLVKAQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 400 bits (1030), Expect = e-126
Identities = 207/573 (36%), Positives = 313/573 (54%), Gaps = 20/573 (3%)
Query: 25 MVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGL 84
VL + A+ + L +A R+M GF + S L+ YF +L +
Sbjct: 19 RVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGL------LNR------YFAFLLV 66
Query: 85 AVMVVA---FLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISK 141
+V+A Y + ER V IR ++ FFD + EV++ ++
Sbjct: 67 VALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDK---NRSGEVVSRLTT 123
Query: 142 DTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLI 201
DT+L+Q ++ + + + NA + I GL S +L+ + + L+++P +++G+ +
Sbjct: 124 DTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVR 183
Query: 202 YLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLGIKQGTAKG- 260
LS+++ A + + L +I+TV +F E R+ ++ + ++ +
Sbjct: 184 KLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRAL 243
Query: 261 LAVGSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTE 320
L L F + W G+H V+ + G + ++ S+G+
Sbjct: 244 LTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQR 303
Query: 321 ASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKV 380
A+ AA R+ + + P+I + +RGEIEFE V F+YP+RPD L NL V
Sbjct: 304 AAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTV 363
Query: 381 KAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEH 440
+ G++VALVG SG+GKST L+ RFYD G + +DGVD+R+L +R M LV Q+
Sbjct: 364 RPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDP 423
Query: 441 ALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQ 500
LF S+ +NI +G+ DAT +EV AAA AA+AH FI LPEGY+T +GERG LSGGQ+Q
Sbjct: 424 VLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQ 483
Query: 501 RIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADL 560
RIAIARAI+K+ ILLLDEATSALD+ESE LVQ AL+ GRTTL++AH+L+TV AD
Sbjct: 484 RIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADR 543
Query: 561 IAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQ 593
I V+D G +V GTH +LI G YA++A+LQ
Sbjct: 544 IVVMDQGRIVAQGTHAELI-AKGGLYARLARLQ 575
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 382 bits (983), Expect = e-119
Identities = 194/549 (35%), Positives = 307/549 (55%), Gaps = 24/549 (4%)
Query: 688 MISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNFAYMGGRLTKRIRLRMLEK 747
MI F+K S + Y ++L+ + Y ++G R+ IR +
Sbjct: 44 MIDHGFSKDSSG---LLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAH 100
Query: 748 ILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAW 807
+++ ++FD +N SG + SRL+ + ++++S++ +S+ ++ +IM + +
Sbjct: 101 LISLSPSFFD--KNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSP 158
Query: 808 KLAVVMIAVQPLTIL--CFYTRKV-LLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGS 864
KL +++ PL +L + R+V LS S + + + A E + R V +FG
Sbjct: 159 KLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIAD---AGSYAGETLGAIRTVQAFGH 215
Query: 865 AGKVLQIFDEAQEEPRKQARK----KSWLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQ 920
F A E+ + AR+ ++ L I + L F + W G V G+
Sbjct: 216 EDAERSRFGGAVEKAYEAARQRIRTRALLTAIVI----VLVFGAIVGVLWVGAHDVIAGK 271
Query: 921 ISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGT 980
+SAG + + F V I + +L + + A + ++L + I +
Sbjct: 272 MSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLP 331
Query: 981 RGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLI 1040
+ G+IE +V+FAYP+RPD L ++ V+PG +V LVG SG GKST+ L+
Sbjct: 332 -----VPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLL 386
Query: 1041 QRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEV 1100
RFYD + G + +DG+D+R+LD R ALV Q+PV++A ++ +NI +G+ DA++ EV
Sbjct: 387 LRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEV 446
Query: 1101 VEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSA 1160
AARAA+AHEFIS+L +GY+T GERGV LSGGQRQRIAIARAI+++ ILLLDEATSA
Sbjct: 447 EAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSA 506
Query: 1161 LDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRG 1220
LD +SEQ+VQ+AL+ +M GRTT+++AHRL T+ K D I ++ GR+V +GT+A+L G
Sbjct: 507 LDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGG 566
Query: 1221 AFFNLATLQ 1229
+ LA LQ
Sbjct: 567 LYARLARLQ 575
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 374 bits (962), Expect = e-116
Identities = 195/571 (34%), Positives = 315/571 (55%), Gaps = 21/571 (3%)
Query: 662 KQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAF 721
K L+ L + + L IG +I A A + L+ L+L+
Sbjct: 14 KLLLLAILLLLLSALLSLLLPLLIGRIIDALLADL-----GELLELLLLLLLLALLGGVL 68
Query: 722 NLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLV 781
LQ Y + +G ++ +R + EK+L ++FD + SG L SRL+N+ V +LV
Sbjct: 69 RALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFD--KAKSGDLISRLTNDVEAVSNLV 126
Query: 782 ADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILC--FYTRKVLLSSVSTNFV 839
+ + L+ + + ++++ ++W+LA++++ + PL L RK +S
Sbjct: 127 STVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKS--RKLSRRVR 184
Query: 840 KAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQC 899
+A +E++ R++ +FG+ + L+ F+EA EE R+ + S L +
Sbjct: 185 EALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLL 244
Query: 900 LTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVAS 959
L+ + L GG LV G ++ G + L+ I + G + S L + S A
Sbjct: 245 LSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAER 304
Query: 960 VFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKP 1019
+F++LD + + L+ G IE V F+YP VL+ S ++P
Sbjct: 305 LFELLDEEPEVEDPPDP--------LKDTIGSIEFENVSFSYP--GKKPVLKDISFSIEP 354
Query: 1020 GTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVI 1079
G V +VG SG GKST+I L+ R YD G + +DG+D+R++ + RK +VSQ+P++
Sbjct: 355 GEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLL 414
Query: 1080 YAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRI 1139
++G IR+NI G+ DA++ E+ EA + ANAHEFI++L DGY+T GERGV LSGGQRQR+
Sbjct: 415 FSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRL 474
Query: 1140 AIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIA 1199
AIARA++RNP IL+LDEATSALD ++E ++Q+AL +++ GRTT+++AHRL+TIK D I
Sbjct: 475 AIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRII 534
Query: 1200 LVADGRVVERGTYAQLTHMRGAFFNLATLQS 1230
++ +GR+VERGT+ +L G + L Q
Sbjct: 535 VLDNGRIVERGTHEELLAKGGLYARLYQAQG 565
|
Length = 567 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 367 bits (944), Expect = e-112
Identities = 175/534 (32%), Positives = 292/534 (54%), Gaps = 31/534 (5%)
Query: 76 SLYFVYLGLAVMVV-----AFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDAT 130
+L + +GL + + L Y + +R +++ ++ +LR + +F+ +
Sbjct: 192 TLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVG 251
Query: 131 TTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLI 190
+ + + I+E L+ + +++ + LA +SW+L+L+ + L +
Sbjct: 252 EIISRVRELEQ----IREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNV 307
Query: 191 IPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILD---- 246
+ +I+ L ++K +E + + + + + I+TV + +AE R +++ L
Sbjct: 308 LITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVN 367
Query: 247 ---STTKLGIKQGTAKGLAVGSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGI---S 300
T KL + T K L + + + W+G+ LV+ T G++ A +
Sbjct: 368 IGFKTEKLALILNTIKSLLQQLSSVL------ILWFGAILVLEGELTLGQLVAFNMLAGY 421
Query: 301 FILSGLSLGSALPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHV 360
FI L + F +A +A R+ D +D PE +G+ T + L +++GEIEFE+V
Sbjct: 422 FISPITRLSQLWTD---FQQAKVALERLGDILDTPPEQEGDKTL-IHLPKLQGEIEFENV 477
Query: 361 KFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVD 420
F Y VL+D +L++ G+ VA+VG SGSGKST + L+ Y G + +DGVD
Sbjct: 478 SFRYGPDDP-PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVD 536
Query: 421 IRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLP 480
+ + L +RR++G V Q+ LF SI++NI G +AT +E+I AA A AH FI LP
Sbjct: 537 LNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLP 596
Query: 481 EGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS 540
GY+T VGE GA LSGGQ+QR+A+ARA++ P ILLLDEATSALD E+E ++ L Q
Sbjct: 597 MGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL 656
Query: 541 LGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQR 594
GRT +++AH+LST+R+AD I V+D G +VE G+H +L+ + G YA++ + Q
Sbjct: 657 QGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLYQQQE 709
|
Length = 709 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 363 bits (934), Expect = e-111
Identities = 201/590 (34%), Positives = 310/590 (52%), Gaps = 38/590 (6%)
Query: 648 PSFFRLLSLNAPEWKQGLIG-------SLSAIAVGSVQPTYALTIGGMISAFFA-KSHSE 699
FRLL L+ +W + SL + + P Y G +I K
Sbjct: 147 DLLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFI----PFY---TGRVIDTLGGDKGPPA 199
Query: 700 MQSRIRTYSLIFCSLSLISLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEE 759
+ S I C LS+ S L+ +F Y R+ RIR + +L + +FDE
Sbjct: 200 LASAI----FFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDE- 254
Query: 760 QNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPL 819
N +G L SRLS++ + ++ V++L++ + + L ++ +L +V + PL
Sbjct: 255 -NKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPL 313
Query: 820 TILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEP 879
L +S +A ++ Q+A EA+ R V SF + F EA EE
Sbjct: 314 VFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEET 373
Query: 880 RKQARKKSWLAGIGMGSAQCLTFM-SWALDFWYGGTLVQKGQISAGDVFKTFFIL--VST 936
+ ++K+ LA G + M L +YGG LV G++S+G++ F+L
Sbjct: 374 LQLNKRKA-LAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNL--VSFLLYQEQL 430
Query: 937 GKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGS-SQAGDGTRGSKLQKISGKIEMR 995
G+ + + S + + A VF+ LDR+ IP + + A G IE +
Sbjct: 431 GEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNLEG--------LIEFQ 482
Query: 996 RVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDG 1055
V F+YP+RPD VL+ + + PG V LVG SG GKSTV L+Q Y G V +DG
Sbjct: 483 DVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDG 542
Query: 1056 MDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISS 1115
+ + + D H+ + ALV QEPV+++G++R+NI +G D + E++ AA+AANAH+FI
Sbjct: 543 VPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIME 602
Query: 1116 LKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDR 1175
+GY+TE GE+G QLSGGQ+QRIAIARA++R P +L+LDEATSALD + EQ++QE R
Sbjct: 603 FPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SR 660
Query: 1176 IMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNL 1225
RT +++AHRL+T+++ D I ++ G VVE GT+ QL +G + +L
Sbjct: 661 SRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHL 710
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 340 bits (874), Expect = e-108
Identities = 131/235 (55%), Positives = 175/235 (74%), Gaps = 2/235 (0%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+EF++V F YP VL+D +L + AG++VALVG SGSGKST + L+ RFYD D G +
Sbjct: 1 VEFKNVTFRYPGDGPP-VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHN 474
IDG D+R L +RR++GLVSQ+ LF ++ +NI +G+ AT +EV AA AANAH
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 475 FIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQN 534
FI +LPEGY+T +GERG LSGGQ+QRIAIARA++K+P IL+LDEATSALD+ESE LVQ
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 535 ALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKM 589
AL++ RTT V+AH+LST+ NAD I V+++G +VE GTH +L+ + G YAK+
Sbjct: 180 ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 352 bits (904), Expect = e-108
Identities = 194/589 (32%), Positives = 306/589 (51%), Gaps = 54/589 (9%)
Query: 24 LMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLG 83
+VL V I + + L +++ GFG L++V L
Sbjct: 15 GLVLAGVAMILVAATESTLAALLKPLLDD-GFGGRDRSV--------------LWWVPLV 59
Query: 84 LAVMVV-----AFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINS 138
+ + V +F+ Y S S + V IR + E +L V FFD Q T +++
Sbjct: 60 VIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGT---LLSR 116
Query: 139 ISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLIIPGMIYGK 198
I+ D+ + ++ + V I Y+SW+L+L+ L +L I K
Sbjct: 117 ITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSK 176
Query: 199 YLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLGIKQGTA 258
L +SK+ G+ + E+ L + V F + R++A+ + +L +K +A
Sbjct: 177 RLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSA 236
Query: 259 KGLA------VGSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSAL 312
++ + S L+ ++ + +F+ + G +FI + ++L +
Sbjct: 237 GSISSPITQLIASLALAVVLF---------IALFQAQAGSLTAGDFTAFITAMIAL---I 284
Query: 313 PELKYFTEASI-------AASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYP 365
LK T + AA +F +D PE D T ++ RG++EF +V F YP
Sbjct: 285 RPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKD---TGTRAIERARGDVEFRNVTFRYP 341
Query: 366 SRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQ 425
R D L +L ++ G++VALVG SGSGKST + L+ RFY+ D G + +DG D+
Sbjct: 342 GR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYT 400
Query: 426 LKWVRREMGLVSQEHALFGTSIKDNIMFGKL-DATMDEVIAAATAANAHNFIRQLPEGYE 484
L +RR++ LVSQ+ LF +I +NI +G+ A E+ A AA A +F+ +LP G +
Sbjct: 401 LASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLD 460
Query: 485 TKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRT 544
T +GE G LLSGGQ+QR+AIARA++K+ IL+LDEATSALD+ESE LVQ AL++ GRT
Sbjct: 461 TPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRT 520
Query: 545 TLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQ 593
TLV+AH+LST+ AD I V+D+G +VE GTHN+L+ R +G YA++ +Q
Sbjct: 521 TLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLAR-NGLYAQLHNMQ 568
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 348 bits (894), Expect = e-107
Identities = 192/592 (32%), Positives = 315/592 (53%), Gaps = 35/592 (5%)
Query: 649 SFFRLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYS 708
+F RL S P ++ ++ I V + + T A + ++ F +
Sbjct: 1 TFRRLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSV-------- 52
Query: 709 LIFCSLSLISLAF-----NLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSS 763
L + L +I LA + + Y +++ ++ + IR+RM EK+L ++FD +
Sbjct: 53 LWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDR--QPT 110
Query: 764 GALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLT--I 821
G L SR++ ++ V S D +LV+ T V I+ L +W+L ++++ + P+ +
Sbjct: 111 GTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSIL 170
Query: 822 LCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRK 881
+ +++ L +S + + T +A E + +R+V FG + FD R+
Sbjct: 171 MRRVSKR--LRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRR 228
Query: 882 QARKKSWLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIA 941
A K + I Q + ++ A+ + Q G ++AGD F F + +I
Sbjct: 229 LAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGD-FTAFI--TAMIALIR 285
Query: 942 EAGSMT---SDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVD 998
S+T + + +G A S+F +LD + GTR +++ G +E R V
Sbjct: 286 PLKSLTNVNAPMQRGLAAAESLFTLLDS------PPEKDTGTR--AIERARGDVEFRNVT 337
Query: 999 FAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDV 1058
F YP R D L S+ ++PG +V LVG+SG GKST++ LI RFY+ + G + +DG D+
Sbjct: 338 FRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDL 396
Query: 1059 RELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKL-DASENEVVEAARAANAHEFISSLK 1117
+ + R+ ALVSQ+ V++ I +NI +G+ A E+ A AA A +F+ L
Sbjct: 397 ADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLP 456
Query: 1118 DGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM 1177
G +T GE GV LSGGQRQR+AIARA++++ IL+LDEATSALD +SE++VQ AL+R+M
Sbjct: 457 LGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM 516
Query: 1178 MGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLATLQ 1229
GRTT+V+AHRL+TI+K D I ++ DGR+VERGT+ +L G + L +Q
Sbjct: 517 QGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLHNMQ 568
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 321 bits (824), Expect = e-101
Identities = 121/234 (51%), Positives = 166/234 (70%), Gaps = 1/234 (0%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
+E + V F YP VLR S+++ G +V LVG SG GKST++ LI RFYDV+ G +
Sbjct: 1 VEFKNVTFRYPGDGPP-VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHE 1111
+DG DVR+ + R+ LVSQ+ ++ + +NI +G+ A+ EV EAARAANAHE
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 1112 FISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQE 1171
FI L +GY+T GERGV+LSGGQRQRIAIARA++++P IL+LDEATSALD +SE++VQ
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 1172 ALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNL 1225
AL+R+M RTT V+AHRL+TI+ D I ++ DG++VERGT+ +L G + L
Sbjct: 180 ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 319 bits (820), Expect = e-101
Identities = 132/239 (55%), Positives = 170/239 (71%), Gaps = 3/239 (1%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
IEFE+V F+Y P VLKD + + AGK VA+VG SGSGKST + L+ RFYD G +
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHN 474
IDG DIR + L +RR +G+V Q+ LF +I NI +G+ DAT +EVI AA AA H+
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHD 118
Query: 475 FIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQN 534
I + P+GY+T VGERG LSGG+KQR+AIARAI+KNP ILLLDEATSALD+ +E +Q
Sbjct: 119 KIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178
Query: 535 ALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQ 593
AL S GRTT+V+AH+LST+ NAD I V+ +G +VE GTH +L+ + G YA+M K Q
Sbjct: 179 ALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMWKAQ 236
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 324 bits (834), Expect = 8e-97
Identities = 162/532 (30%), Positives = 272/532 (51%), Gaps = 30/532 (5%)
Query: 708 SLIFCSLSLISLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALC 767
++ +L LL+ Y A++G RL + R +L ++F E+ S G +
Sbjct: 197 AIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYF--EKRSVGEII 254
Query: 768 SRLSNEASMVKSLVADRV-SLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYT 826
SR+ E ++ + + +L++ A+ +M L +WKL ++++A PL +L
Sbjct: 255 SRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLY-SWKLTLIVLAAIPLNVL---- 308
Query: 827 RKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAG--KVLQIFDEAQEEPRKQ-- 882
++ + ++ + R I A +V + K L + + +
Sbjct: 309 ----ITLIFQPLLRRKTRK-LIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLA 363
Query: 883 -----ARKKSWLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTG 937
K LA I L +S L W+G LV +G+++ G + F +L G
Sbjct: 364 KQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLV-AFNML--AG 420
Query: 938 KVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRV 997
I+ ++ A ++ ++ D P L K+ G+IE V
Sbjct: 421 YFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQE---GDKTLIHLPKLQGEIEFENV 477
Query: 998 DFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMD 1057
F Y D VL S+E+ PG V +VG+SG GKST++ L+ Y +QG + +DG+D
Sbjct: 478 SFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVD 536
Query: 1058 VRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLK 1117
+ ++D+ R+ V Q+P +++G+IR+NI G +A++ E++EAA+ A AHEFI +L
Sbjct: 537 LNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLP 596
Query: 1118 DGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM 1177
GY+T GE G LSGGQRQR+A+ARA++ P ILLLDEATSALD ++E ++ + L +I+
Sbjct: 597 MGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL 656
Query: 1178 MGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLATLQ 1229
GRT I++AHRL+TI+ D I ++ G++VE+G++ +L G + L Q
Sbjct: 657 QGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQQ 708
|
Length = 709 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 301 bits (772), Expect = 3e-94
Identities = 114/227 (50%), Positives = 167/227 (73%), Gaps = 2/227 (0%)
Query: 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDG 412
GEIEFE+V FSY VLKD N +K G++VA+VG +G+GK+T I L+ RFYD G
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 413 IVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANA 472
+ IDG+DIR + K +R +G+V Q+ LF +I +NI G+ +AT +EVI AA A A
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGA 118
Query: 473 HNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLV 532
H+FI +LP GY+T +GE G LS G++Q +AIARA++++P IL+LDEATS +D+E+E L+
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 533 QNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLI 579
Q AL++ GRT++++AH+LST++NAD I V+D+G ++E GTH++L+
Sbjct: 179 QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELL 225
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 306 bits (786), Expect = 1e-91
Identities = 179/540 (33%), Positives = 287/540 (53%), Gaps = 54/540 (10%)
Query: 79 FVYLGLAVM--VVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVI 136
V +GL ++ + +F+ YC S S + V+ +R + ++ V FFD Q +T ++
Sbjct: 69 LVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQ---STGTLL 125
Query: 137 NSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAF---PTLLLLIIPG 193
+ I+ D+ + S + V + I Y+SW+LSL+ P + + I
Sbjct: 126 SRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAI--- 182
Query: 194 MIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLGI 253
+ K +SK G+ EQ L K V F + R++ + + + G+
Sbjct: 183 RVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGM 242
Query: 254 KQGTAKGLAVGSTGL--SFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGS- 310
K +A ++ L S A+ L YAA ++ L+ G+
Sbjct: 243 KMVSASSISDPIIQLIASLALAFVL------------------YAASFPSVMDTLTAGTI 284
Query: 311 ---------ALPELKYFTEAS------IAASR-IFDRIDRVPEIDGEDTKGLVLDEVRGE 354
+ LK T + +AA + +F +D E +D V++ +G+
Sbjct: 285 TVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQE---KDEGKRVIERAKGD 341
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
IEF +V F+YP + + L++ N K+ AGK+VALVG SGSGKST L+ RFYD D+G +
Sbjct: 342 IEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEI 400
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDA-TMDEVIAAATAANAH 473
+DG D+R L +R ++ LVSQ LF +I +NI + + + + +++ AA A A
Sbjct: 401 LLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAM 460
Query: 474 NFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQ 533
+FI ++ G +T +GE G LLSGGQ+QRIAIARA++++ IL+LDEATSALD+ESE +Q
Sbjct: 461 DFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ 520
Query: 534 NALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQ 593
ALD+ RT+LV+AH+LST+ AD I VV++G +VE GTH +L+ + +G YA++ K+Q
Sbjct: 521 AALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ-NGVYAQLHKMQ 579
|
Length = 582 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 306 bits (786), Expect = 2e-91
Identities = 164/444 (36%), Positives = 252/444 (56%), Gaps = 45/444 (10%)
Query: 171 STYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKE----YGKANAIVEQALSSIK 226
+ + +WRLSLV +L I+ +I ++ +K Y A V A+ ++
Sbjct: 151 ALFMNWRLSLVLV---VLGIVYTLI-TTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVS 206
Query: 227 TVYSFSAERRIIDRYEAILDSTTKLGIKQ-------GTAKGLAVGSTGLS----FAIWAF 275
V S++ RI +A+ D L Q A L ++ ++ + A
Sbjct: 207 VVQSYN---RIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGAA 263
Query: 276 LAWYGSHLVMFKGETG-GKIYAAGISFILSGLSLGSALPELKYF-TEASIAASRI---FD 330
L + KG+ G++ ++F+ L L ++ F + +AA ++ F+
Sbjct: 264 L--------VQKGQLRVGEV----VAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFE 311
Query: 331 RIDRVPEIDGEDTKGLV-LDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALV 389
D VP++ D G + L V+G +EF+ V FSY + + +D + + K G++VA+V
Sbjct: 312 VEDAVPDV--RDPPGAIDLGRVKGAVEFDDVSFSYDNSRQGV--EDVSFEAKPGQTVAIV 367
Query: 390 GASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKD 449
G +G+GKST I L+QR +D G + IDG DIR + +RR + +V Q+ LF SI+D
Sbjct: 368 GPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIED 427
Query: 450 NIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAII 509
NI G+ DAT +E+ AAA A AH+FI + P+GY+T VGERG LSGG++QR+AIARA++
Sbjct: 428 NIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALL 487
Query: 510 KNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCL 569
K+P IL+LDEATSALD E+E V+ ALD+ GRTT ++AH+LSTVRNAD I V DNG +
Sbjct: 488 KDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRV 547
Query: 570 VEIGTHNDLINRIDGHYAKMAKLQ 593
VE G+ ++L+ R G +A + + Q
Sbjct: 548 VESGSFDELVAR-GGRFAALLRAQ 570
|
Length = 588 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 288 bits (740), Expect = 1e-89
Identities = 117/239 (48%), Positives = 161/239 (67%), Gaps = 4/239 (1%)
Query: 992 IEMRRVDFAY-PSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
IE V FAY P RP VL+ S + G V +VG SG GKST++ L+ RFYDV GS
Sbjct: 1 IEFENVTFAYDPGRP---VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS 57
Query: 1051 VRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAH 1110
+ +DG D+RE+ + R+ +V Q+ V++ I NI +G+ DA++ EV+EAA+AA H
Sbjct: 58 ILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIH 117
Query: 1111 EFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQ 1170
+ I DGY+T GERG++LSGG++QR+AIARAI++NP ILLLDEATSALD +E+ +Q
Sbjct: 118 DKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 1171 EALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLATLQ 1229
AL + GRTTIV+AHRL+TI D I ++ DGR+VERGT+ +L G + + Q
Sbjct: 178 AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMWKAQ 236
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 283 bits (726), Expect = 8e-88
Identities = 102/231 (44%), Positives = 164/231 (70%), Gaps = 2/231 (0%)
Query: 990 GKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQG 1049
G+IE V+F+Y VL+ + +KPG +V +VG +G GK+T+I L+ RFYD ++G
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 1050 SVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANA 1109
+ +DG+D+R++ R +V Q+ +++G I +NI G+ +A++ EV+EAA+ A A
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGA 118
Query: 1110 HEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVV 1169
H+FI L +GY+T GE G LS G+RQ +AIARA++R+P IL+LDEATS +D ++E+++
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 1170 QEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRG 1220
QEAL+++M GRT+I++AHRL+TIK D I ++ DG+++E GT+ +L +G
Sbjct: 179 QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKKG 229
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 288 bits (740), Expect = 3e-85
Identities = 187/595 (31%), Positives = 312/595 (52%), Gaps = 43/595 (7%)
Query: 650 FFRLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAF-------FAKSHSEMQS 702
F RL AP +K GLI + A+ + + T+ M+S F K+ S
Sbjct: 13 FRRLWPTIAP-FKAGLIVAGVALILNAASDTF------MLSLLKPLLDDGFGKADR---S 62
Query: 703 RIRTYSLIFCSLSLISLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNS 762
++ L+ L ++ + + Y +++ G++ +R R+ ++ ++FD + S
Sbjct: 63 VLKWMPLVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFD--KQS 120
Query: 763 SGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTIL 822
+G L SR++ ++ V S + + +V+ +++ IM +W+L++++I + P I+
Sbjct: 121 TGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAP--IV 178
Query: 823 CFYTRKV--LLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPR 880
R V ++S N + T A + + H+ V FG + FD+ R
Sbjct: 179 SIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMR 238
Query: 881 KQARKKSWLAGIGMGSAQCLTFMSWALDF-WYGGTLVQ-KGQISAGD---VFKTFFILVS 935
+Q K + I Q + S AL F Y + ++AG VF + L+
Sbjct: 239 QQGMKMVSASSISDPIIQLIA--SLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMR 296
Query: 936 TGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMR 995
K + ++ + +G A ++F ILD + + +G R +++ G IE R
Sbjct: 297 PLKSLT---NVNAQFQRGMAACQTLFAILDLEQ------EKDEGKR--VIERAKGDIEFR 345
Query: 996 RVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDG 1055
V F YP + + LR + ++ G +V LVG+SG GKST+ L+ RFYD+++G + +DG
Sbjct: 346 NVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDG 404
Query: 1056 MDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDA-SENEVVEAARAANAHEFIS 1114
D+R+ + R ALVSQ ++ I +NI + + + S ++ EAAR A A +FI+
Sbjct: 405 HDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFIN 464
Query: 1115 SLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALD 1174
+ +G +T GE GV LSGGQRQRIAIARA++R+ IL+LDEATSALD +SE+ +Q ALD
Sbjct: 465 KMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 524
Query: 1175 RIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLATLQ 1229
+ RT++V+AHRL+TI+K D I +V DG +VERGT+A+L G + L +Q
Sbjct: 525 ELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVYAQLHKMQ 579
|
Length = 582 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 288 bits (738), Expect = 1e-83
Identities = 181/541 (33%), Positives = 290/541 (53%), Gaps = 58/541 (10%)
Query: 82 LGLAVMVVAFLE-GYCW------SKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSE 134
L LA++ VA E + + R V++ + +L +G+F+S+
Sbjct: 181 LALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESR------R 234
Query: 135 VINSISKDTSLIQELLSEKVPIFVMNASVFIS-GLAFSTYF---SWRLSLVAFPTLLLLI 190
V +++++ ++EL E++ F+ +++ + L F F + S PTL ++
Sbjct: 235 VGDTVAR----VREL--EQIRNFLTGSALTVVLDLLFVVVFLAVMFFYS----PTLTGVV 284
Query: 191 IPGMIYGKYLIY-------LSKKAYKEYGK---ANAIVEQALSSIKTVYSFSAERRIIDR 240
I ++ Y + L K+ ++ + A + + ++++ I+T+ + + E + +R
Sbjct: 285 IGSLVC--YALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNR 342
Query: 241 YEAILDSTTKLG---IKQGTAKGLAVG-STGLSFAIWAFLAWYGSHLVMFKGETGGKIYA 296
++ L + G G A+ L+FAI L W+G+HLV+ + G++ A
Sbjct: 343 WDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAI---LLWFGAHLVIGGALSPGQLVA 399
Query: 297 AGISFILSGLSLGSALPELKY---FTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRG 353
+ L+G L + F + IA R+ D ++ P L E+RG
Sbjct: 400 FNM---LAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNS-PTEPRSAGL-AALPELRG 454
Query: 354 EIEFEHVKFSYPSRPDS-IVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDG 412
I FE+++F Y PDS VL + NL +K G+ + +VG SGSGKST L+QR Y G
Sbjct: 455 AITFENIRFRY--APDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHG 512
Query: 413 IVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANA 472
V +DGVD+ W+RR+MG+V QE+ LF SI+DNI A + VI AA A A
Sbjct: 513 QVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGA 572
Query: 473 HNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLV 532
H+FI +LP+GY T+VGE+GA LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE L+
Sbjct: 573 HDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALI 632
Query: 533 QNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKL 592
+ + GRT +++AH+LSTVR D I V++ G + E G H +L+ + G YA++ +
Sbjct: 633 MRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELL-ALQGLYARLWQQ 691
Query: 593 Q 593
Q
Sbjct: 692 Q 692
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 267 bits (685), Expect = 4e-82
Identities = 122/240 (50%), Positives = 169/240 (70%), Gaps = 4/240 (1%)
Query: 355 IEFEHVKFSYPSRPDS-IVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI 413
I FEHV+F Y +PD ++L + +L++K G+ V +VG SGSGKST L+QRFY ++G
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 414 VRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAH 473
V +DG D+ W+RR++G+V QE+ LF SI+DNI +M+ VI AA A AH
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAH 118
Query: 474 NFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQ 533
+FI +LPEGY+T VGE+GA LSGGQ+QRIAIARA+I NP IL+ DEATSALD ESE +
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 534 NALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQ 593
+ GRT +++AH+LSTV+NAD I V++ G +VE G+H++L+ +G YA + +LQ
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLYQLQ 237
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 275 bits (706), Expect = 2e-81
Identities = 166/422 (39%), Positives = 242/422 (57%), Gaps = 14/422 (3%)
Query: 174 FSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSA 233
+ W +L T++L ++ +I + + ANA +L + +TV F
Sbjct: 81 YGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGN 140
Query: 234 ERRIIDRYEAILDSTTKLGIKQGTAKG-LAVGSTGLSFAIWAFLAWYGSHLVMFKGE--T 290
E RY+ L++ K IK + L G T + F+ + S L + +G+
Sbjct: 141 EEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAI-FSTGLRVMMTMSALGVEEGQLTV 199
Query: 291 GGKIYAAGISFILS--GLSLGSALPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVL 348
G + + F LS LG + E++ +A ++FD +D E+ + L
Sbjct: 200 GDLVNVNALLFQLSIPLNFLGFSYREIR---QALTDMEKMFDLLDVEAEVS-DAPDAPPL 255
Query: 349 DEVR-GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFY 407
VR G + F +V F+Y P +L + + GK+VA+VG SG+GKST + L+ RFY
Sbjct: 256 WPVRLGAVAFINVSFAY--DPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFY 313
Query: 408 DADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAA 467
D + G + IDG DIR + + +RR +G+V Q+ LF +I NI +G+ DAT +EV AAA
Sbjct: 314 DVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAA 373
Query: 468 TAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSE 527
AA H+FI+ LPEGY+T VGERG LSGG+KQR+AIAR I+KNP IL+LDEATSALD+
Sbjct: 374 EAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTH 433
Query: 528 SETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYA 587
+E +Q AL + S GRTTLV+AH+LST+ +AD I V+DNG +VE GTH +L+ G YA
Sbjct: 434 TEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAA-GGLYA 492
Query: 588 KM 589
+M
Sbjct: 493 EM 494
|
Length = 497 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 277 bits (711), Expect = 5e-80
Identities = 134/345 (38%), Positives = 193/345 (55%), Gaps = 17/345 (4%)
Query: 889 LAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDV--FKTFFILVSTGKVIAEAGSM 946
+AG + Q LTF A+ W+G LV G +S G + F V T V+ A +
Sbjct: 363 IAGQAIELIQKLTF---AILLWFGAHLVIGGALSPGQLVAFNMLAGRV-TQPVLRLA-QL 417
Query: 947 TSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPD 1006
D + A+ + IL+ + AG L ++ G I + F Y PD
Sbjct: 418 WQDFQQTGIALERLGDILNSPT---EPRSAGLAA----LPELRGAITFENIRFRY--APD 468
Query: 1007 A-LVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW 1065
+ VL ++++KPG +G+VG SG GKST+ L+QR Y + G V VDG+D+ D W
Sbjct: 469 SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAW 528
Query: 1066 YRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECG 1125
R+ +V QE V+++ +IRDNI A V+ AA+ A AH+FIS L GY TE G
Sbjct: 529 LRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVG 588
Query: 1126 ERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVV 1185
E+G LSGGQRQRIAIARA++ NP IL+ DEATSALD +SE ++ + I GRT I++
Sbjct: 589 EKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIII 648
Query: 1186 AHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLATLQS 1230
AHRL+T++ D I ++ G++ E G + +L ++G + L QS
Sbjct: 649 AHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLWQQQS 693
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 273 bits (701), Expect = 9e-80
Identities = 128/325 (39%), Positives = 185/325 (56%), Gaps = 22/325 (6%)
Query: 912 GGTLVQKGQISAGDV-----FKTFFI--LVSTGKVIAEAGSMTSDLAKGSTAVASVFKIL 964
G LVQKGQ+ G+V F T I L I + L + +V +
Sbjct: 261 GAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVR 320
Query: 965 DRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVG 1024
D I L ++ G +E V F+Y + + S E KPG +V
Sbjct: 321 DPPGAID-------------LGRVKGAVEFDDVSFSYDNSRQGV--EDVSFEAKPGQTVA 365
Query: 1025 LVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNI 1084
+VG +G GKST+I L+QR +D + G + +DG D+R + R++ A+V Q+ ++ +I
Sbjct: 366 IVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSI 425
Query: 1085 RDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARA 1144
DNI G+ DA++ E+ AA A AH+FI DGY+T GERG QLSGG+RQR+AIARA
Sbjct: 426 EDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARA 485
Query: 1145 IIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADG 1204
++++P IL+LDEATSALDV++E V+ ALD +M GRTT ++AHRL+T++ D I + +G
Sbjct: 486 LLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNG 545
Query: 1205 RVVERGTYAQLTHMRGAFFNLATLQ 1229
RVVE G++ +L G F L Q
Sbjct: 546 RVVESGSFDELVARGGRFAALLRAQ 570
|
Length = 588 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 257 bits (657), Expect = 2e-78
Identities = 112/222 (50%), Positives = 157/222 (70%)
Query: 346 LVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQR 405
L D ++G ++F++V F+YP+RPD++VL+D + + G+ ALVG SGSGKST +AL++
Sbjct: 3 LAPDHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLEN 62
Query: 406 FYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIA 465
FY G V +DG I + + K++ ++ LV QE LF S++DNI +G + + V
Sbjct: 63 FYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKE 122
Query: 466 AATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALD 525
AA A+AH+FI +L GY+T+VGE+G+ LSGGQKQR+AIARA+I+NP +L+LDEATSALD
Sbjct: 123 AAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALD 182
Query: 526 SESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNG 567
+ESE VQ AL RT LV+AH+LSTV AD I V+D G
Sbjct: 183 AESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGG 224
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 255 bits (652), Expect = 1e-77
Identities = 108/221 (48%), Positives = 151/221 (68%)
Query: 986 QKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD 1045
+ G ++ + V FAYP+RPD LVL+ S + PG LVG SG GKSTV+ L++ FY
Sbjct: 6 DHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ 65
Query: 1046 VEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAAR 1105
+ G V +DG + + + + +LV QEPV++A +++DNI +G S V EAA+
Sbjct: 66 PQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQ 125
Query: 1106 AANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQS 1165
A+AH FIS L GY+TE GE+G QLSGGQ+QR+AIARA+IRNP +L+LDEATSALD +S
Sbjct: 126 KAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAES 185
Query: 1166 EQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRV 1206
EQ VQ+AL RT +V+AHRL+T+++ D I ++ GR+
Sbjct: 186 EQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 255 bits (652), Expect = 2e-77
Identities = 116/239 (48%), Positives = 153/239 (64%), Gaps = 3/239 (1%)
Query: 992 IEMRRVDFAYPSRPDA-LVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
I V F Y +PD ++L S+ +KPG VG+VG+SG GKST+ LIQRFY E G
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 1051 VRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAH 1110
V VDG D+ D W R+ +V QE V++ +IRDNI S V+EAA+ A AH
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAH 118
Query: 1111 EFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQ 1170
+FIS L +GY+T GE+G LSGGQRQRIAIARA+I NP IL+ DEATSALD +SE +
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 1171 EALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLATLQ 1229
+ I GRT I++AHRL+T+K D I ++ GR+VE+G++ +L G + L LQ
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQLQ 237
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 238 bits (609), Expect = 2e-72
Identities = 94/213 (44%), Positives = 129/213 (60%), Gaps = 43/213 (20%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
IEF++V FSYP RP VLKD +L +K G+ VA+VG SGSGKST + L+ R YD G +
Sbjct: 1 IEFKNVSFSYPGRPK-PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHN 474
IDGVD+R L L+ +R+ + V Q+ LF +I++NI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 475 FIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQN 534
LSGGQ+QRIAIARA++++P IL+LDEATSALD E+E L+
Sbjct: 97 -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137
Query: 535 ALDQASLGRTTLVVAHKLSTVRNADLIAVVDNG 567
AL + G+T +V+AH+LST+R+AD I V+D+G
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 236 bits (604), Expect = 9e-72
Identities = 91/214 (42%), Positives = 127/214 (59%), Gaps = 43/214 (20%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
IE + V F+YP RP VL+ S+ +KPG V +VG SG GKST++ L+ R YD G +
Sbjct: 1 IEFKNVSFSYPGRP-KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHE 1111
+DG+D+R+LD+ RK+ A V Q+P +++G IR+NI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 1112 FISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQE 1171
LSGGQRQRIAIARA++R+P IL+LDEATSALD ++E ++ E
Sbjct: 97 -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137
Query: 1172 ALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGR 1205
AL + G+T IV+AHRL+TI+ D I ++ DGR
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 250 bits (639), Expect = 2e-71
Identities = 162/433 (37%), Positives = 243/433 (56%), Gaps = 37/433 (8%)
Query: 176 WRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAY----KEYGKANAIVEQALSSIKTVYSF 231
WRLS+V L++L I ++ K ++ +K Y V ++S++ V+S+
Sbjct: 156 WRLSIV----LMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSY 211
Query: 232 SAERRIIDRYEAILDSTTKLGIKQ-------GTAKGLAVGSTGLSFAIWAFLAWYGSHLV 284
+ RI A+ T L Q A GL ++ +S + G+ LV
Sbjct: 212 N---RIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVI---GTVLV 265
Query: 285 MFKGETG-GKIYAAGISFI-LSGLSLGSALPELKYFT----EASIAASRIFDRIDRVPEI 338
+ KGE G++ I+FI + L +G L ++ F EA FD D V +
Sbjct: 266 I-KGELSVGEV----IAFIGFANLLIGR-LDQMSGFITQIFEARAKLEDFFDLEDSVFQR 319
Query: 339 DGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKST 398
+ E L V+G +EF H+ F + + + D + + KAG++VA+VG +G+GK+T
Sbjct: 320 E-EPADAPELPNVKGAVEFRHITFEFANSSQGV--FDVSFEAKAGQTVAIVGPTGAGKTT 376
Query: 399 AIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDA 458
I L+QR YD G + IDG+DI + + +R+ + V Q+ LF SI++NI G+ A
Sbjct: 377 LINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGA 436
Query: 459 TMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLD 518
T +EV AA AA AH+FI + GY+T VGERG LSGG++QR+AIARAI+KN IL+LD
Sbjct: 437 TDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLD 496
Query: 519 EATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDL 578
EATSALD E+E V+NA+D RTT ++AH+LSTVRNADL+ +D G L+E G+ +L
Sbjct: 497 EATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQEL 556
Query: 579 INRIDGHYAKMAK 591
I + DG + K+ +
Sbjct: 557 IQK-DGRFYKLLR 568
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 250 bits (640), Expect = 2e-70
Identities = 136/410 (33%), Positives = 227/410 (55%), Gaps = 25/410 (6%)
Query: 173 YFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFS 232
L V + L+++PG++ + L L++++ +E + NA++ ++LS ++T+ + +
Sbjct: 282 IIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALN 341
Query: 233 AERRIIDRYEAILDSTTKLGIKQGTAKGLAVGSTGL-----SFAIWAFLAWYGSHLVMFK 287
AE R R+E + + + G+K LA S AI G +L+
Sbjct: 342 AEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVV----GVYLIS-D 396
Query: 288 GE--TGGKIYAAGISFILSGLSLG-----SALPELKYFTEASIAASRIFDRIDRVPEIDG 340
GE GG I +LSG +L + L L + +A A + D + ++P
Sbjct: 397 GELTMGGLIAC----VMLSGRALAPLGQLAGL--LTRYQQAKTALQSL-DELMQLPVERP 449
Query: 341 EDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAI 400
E T+ L ++GEIEF +V F+YP + L + +L ++ G+ VA++G GSGKST +
Sbjct: 450 EGTRFLHRPRLQGEIEFRNVSFAYPGQETP-ALDNVSLTIRPGEKVAIIGRIGSGKSTLL 508
Query: 401 ALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATM 460
L+ Y +G V +DGVDIR++ +RR +G V Q+ LF +++DNI G A
Sbjct: 509 KLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADD 568
Query: 461 DEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEA 520
+E++ AA A F+R+ P+G + ++GERG LSGGQ+Q +A+ARA++++P ILLLDE
Sbjct: 569 EEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEP 628
Query: 521 TSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLV 570
TSA+D+ SE ++ L + G+T ++V H+ S + D I V+DNG +V
Sbjct: 629 TSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIV 678
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 241 bits (618), Expect = 2e-69
Identities = 142/435 (32%), Positives = 232/435 (53%), Gaps = 20/435 (4%)
Query: 795 VAIAMIMGLVV--AWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNF----VKAQNRSTQI 848
+++ ++ V W ++ T++ + V++S T+F A + +
Sbjct: 70 ISLVAVILWRVYGWWFALTTLV-----TVILYLLFTVIVSDWRTDFRRLMNNADSDANAK 124
Query: 849 AVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTF-MSWAL 907
A+++++N V FG+ +D A E K A K ++ + + Q F +
Sbjct: 125 AIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK-VHVSLLVLNFGQTAIFSTGLRV 183
Query: 908 DFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQ 967
V++GQ++ GD+ +L + G ++ + T + +F +LD +
Sbjct: 184 MMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVE 243
Query: 968 SLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVG 1027
+ + + A G + V FAY P +L S + G +V +VG
Sbjct: 244 AEVSDAPDAPPLWPV-----RLGAVAFINVSFAY--DPRRPILNGISFTIPLGKTVAIVG 296
Query: 1028 KSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDN 1087
+SG GKST++ L+ RFYDV GS+ +DG D+R++ R+ +V Q+ V++ I N
Sbjct: 297 ESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYN 356
Query: 1088 IVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIR 1147
I +G+ DA+ EV AA AA H+FI SL +GY+T GERG++LSGG++QR+AIAR I++
Sbjct: 357 IKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILK 416
Query: 1148 NPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVV 1207
NP IL+LDEATSALD +EQ +Q AL + GRTT+V+AHRL+TI D I ++ +GR+V
Sbjct: 417 NPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIV 476
Query: 1208 ERGTYAQLTHMRGAF 1222
ERGT+ +L G +
Sbjct: 477 ERGTHEELLAAGGLY 491
|
Length = 497 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 238 bits (610), Expect = 1e-67
Identities = 142/447 (31%), Positives = 223/447 (49%), Gaps = 42/447 (9%)
Query: 168 LAFSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKT 227
L +F+W +L+ T L+ + ++ G S+K + + + L ++T
Sbjct: 132 LIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLET 191
Query: 228 VYSFSAERRIIDRYEAILDSTTKLGIKQGTAKGLAVGSTGLSFAIWAFLAWYGSHLVMFK 287
+ +F E I + ++ T L + LS A+ F A+ LV
Sbjct: 192 LRAFGRTE---ATEERIRKDSEDF--RKATMSVLRIAF--LSSAVLEFFAYLSIALV--- 241
Query: 288 GETGGKIYAAGISFILSG-LSLGSAL------PELKYF------------TEASIAAS-R 327
G + G L+L + L PE +F A AA+ +
Sbjct: 242 ------AVYIGFRLLGEGDLTLFAGLFVLILAPE--FFQPLRDLGSFFHAAAAGEAAADK 293
Query: 328 IFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVA 387
+F ++ G K V +E EI E++ F YP L D NL +KAG+ A
Sbjct: 294 LFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPD--GKPALSDLNLTIKAGQLTA 351
Query: 388 LVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSI 447
LVGASG+GKST + L+ F G +R++G+D+R L + R+++ VSQ LF +I
Sbjct: 352 LVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTI 411
Query: 448 KDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARA 507
++NI+ + DA+ +E+IAA A F+ + P+G +T +GE GA LSGGQ QR+A+ARA
Sbjct: 412 RENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARA 470
Query: 508 IIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNG 567
++ +LLLDE T+ LD+E+E ++ AL + + +T LV+ H+L +AD I V+DNG
Sbjct: 471 LLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNG 530
Query: 568 CLVEIGTHNDLINRIDGHYAKMAKLQR 594
LVE GTH +L + G YA + K Q
Sbjct: 531 RLVEQGTHEEL-SEKQGLYANLLKQQE 556
|
Length = 559 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 223 bits (570), Expect = 2e-66
Identities = 88/218 (40%), Positives = 135/218 (61%), Gaps = 1/218 (0%)
Query: 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDG 412
G IEF +V FSYP++ L + +L ++AG+ VA++G GSGKST + L+ Y G
Sbjct: 1 GRIEFRNVSFSYPNQEIP-ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 413 IVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANA 472
V +DG DIR+L +RR +G V Q+ LF +++DNI G A + ++ AA A
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119
Query: 473 HNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLV 532
+F+ + P G + ++GERG LSGGQ+Q +A+ARA++ +P ILLLDE TSA+D SE +
Sbjct: 120 TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 533 QNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLV 570
+ L Q +T +++ H+ S + D I V+D+G +V
Sbjct: 180 KERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIV 217
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 236 bits (605), Expect = 6e-66
Identities = 159/489 (32%), Positives = 251/489 (51%), Gaps = 33/489 (6%)
Query: 117 LRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSW 176
LR V FF + IS+ I+ +LS +++ + L Y+SW
Sbjct: 220 LRLPVSFFRQYSTGDLASRAMGISQ----IRRILSGSTLTTLLSGIFALLNLGLMFYYSW 275
Query: 177 RLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERR 236
+L+LVA L+ I ++ G + ++ + GK + + Q ++ I + AE R
Sbjct: 276 KLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENR 335
Query: 237 IIDRYEAILDSTTKLGIK-QGTAKGLAVGSTGL----SFAIWAFLAWYGSHLVMFKGETG 291
R+ + KL + Q L V + L S A++A + G
Sbjct: 336 AFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFL 395
Query: 292 GKIYAAGISFILSGLSLGSALPELKYFTEASIAASRIFDRI----DRVPEIDGEDTKGLV 347
A G SF + L + L + +A +++R + +PE+D T
Sbjct: 396 AFNTAFG-SFSGAVTQLSNTLISI-------LAVIPLWERAKPILEALPEVDEAKTDP-- 445
Query: 348 LDEVRGEIEFEHVKFSYPSRPDS-IVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRF 406
++ G IE + V F Y RPD ++L D +L+++ G+ VA+VG SGSGKST + L+ F
Sbjct: 446 -GKLSGAIEVDRVTFRY--RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGF 502
Query: 407 YDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAA 466
+ G V DG D+ L ++ VRR++G+V Q L SI +NI G T+DE A
Sbjct: 503 ETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEA 561
Query: 467 ATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDS 526
A A IR +P G T + E G LSGGQ+QR+ IARA+++ P ILL DEATSALD+
Sbjct: 562 ARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDN 621
Query: 527 ESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHY 586
++ +V +L++ L T +V+AH+LST+RNAD I V+D G +V+ GT+++L+ R +G +
Sbjct: 622 RTQAIVSESLER--LKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGLF 678
Query: 587 AKMAKLQRQ 595
A++A +RQ
Sbjct: 679 AQLA--RRQ 685
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 219 bits (560), Expect = 3e-65
Identities = 84/221 (38%), Positives = 137/221 (61%), Gaps = 1/221 (0%)
Query: 990 GKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQG 1049
G+IE R V F+YP++ L S+ ++ G V ++G+ G GKST++ L+ Y G
Sbjct: 1 GRIEFRNVSFSYPNQE-IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 1050 SVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANA 1109
SV +DG D+R+LD R++ V Q+ ++ G +RDNI G A + ++ AA A
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119
Query: 1110 HEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVV 1169
+F++ +G + + GERG LSGGQRQ +A+ARA++ +P ILLLDE TSA+D+ SE+ +
Sbjct: 120 TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 1170 QEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERG 1210
+E L +++ +T I++ HR + + +D I ++ GR+V G
Sbjct: 180 KERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 230 bits (589), Expect = 3e-65
Identities = 97/251 (38%), Positives = 134/251 (53%), Gaps = 11/251 (4%)
Query: 949 DLAKGSTAVASVFKILDRQSLI-PGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDA 1007
A G A ++F +LD G + + +E V AYP R A
Sbjct: 286 ARADGVAAAEALFAVLDAAPRPLAGKAPVTAAP--------APSLEFSGVSVAYPGRRPA 337
Query: 1008 LVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYR 1067
L R S V PG V LVG SG GKST++ L+ F D +GS+ V+G+ + + D +R
Sbjct: 338 L--RPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWR 395
Query: 1068 KHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGER 1127
A V Q P ++AG I +NI + DAS+ E+ EA A EF+++L G +T GE
Sbjct: 396 DQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEG 455
Query: 1128 GVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAH 1187
G LSGGQ QR+A+ARA +R+ +LLLDE T+ LD ++E V EAL + GRT ++V H
Sbjct: 456 GAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTH 515
Query: 1188 RLNTIKKLDSI 1198
RL D I
Sbjct: 516 RLALAALADRI 526
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 234 bits (600), Expect = 4e-65
Identities = 139/498 (27%), Positives = 248/498 (49%), Gaps = 40/498 (8%)
Query: 111 KYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAF 170
++L +LR V FF + A + + + + E LS ++ ++A + +
Sbjct: 232 RFLWHILRLPVRFFAQRHAGDIASRVQLNDQ----VAEFLSGQLATTALDAVMLVFYALL 287
Query: 171 STYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYS 230
+ L+L+ + ++ + + + +++ ++ GK + L SI+T+ +
Sbjct: 288 MLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKA 347
Query: 231 FSAE----RRIIDRYEAILDSTTKLGIKQGTAKGLAVGSTGLSFAIWAFLAWYGSHLVMF 286
E R +L++ +LG+ L T L+ A L G VM
Sbjct: 348 SGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSA--LILVV-GGLRVM- 403
Query: 287 KGE-TGGKIYAAG---ISFI--LSGL-SLGSALPELKYFTEASIAASRIFDRIDRVPEID 339
+G+ T G + A SF+ ++ L G L EL E + +R+ D + +
Sbjct: 404 EGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQEL----EGDL--NRLDDVLRNPVDPL 457
Query: 340 GEDTKGLVLDE-----VRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGS 394
E+ + + G +E ++ F Y S + ++++F+L ++ G+ VALVG SGS
Sbjct: 458 LEEEEAPAAGSEPSPRLSGYVELRNITFGY-SPLEPPLIENFSLTLQPGQRVALVGGSGS 516
Query: 395 GKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNI-MF 453
GKST LV Y G + DG+ + + + + +V Q+ LF +++DN+ ++
Sbjct: 517 GKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLW 576
Query: 454 GKLDATM--DEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKN 511
D T+ +++ A A H+ I P GY+ ++ E GA LSGGQ+QR+ IARA+++N
Sbjct: 577 ---DPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRN 633
Query: 512 PVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVE 571
P IL+LDEATSALD E+E ++ + L + G T ++VAH+LST+R+ D I V++ G +V+
Sbjct: 634 PSILILDEATSALDPETEKIIDDNLRRR--GCTCIIVAHRLSTIRDCDEIIVLERGKVVQ 691
Query: 572 IGTHNDLINRIDGHYAKM 589
GTH +L G YA++
Sbjct: 692 RGTHEELWAV-GGAYARL 708
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 232 bits (594), Expect = 2e-64
Identities = 160/602 (26%), Positives = 273/602 (45%), Gaps = 60/602 (9%)
Query: 647 PPSFFRLLSLNAPEWK--QGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSH------S 698
PS R L W+ +G G+L + + + L + G++ F++
Sbjct: 138 KPSLLRAL------WRRLRGSRGALLYLLLAGL----LLVLPGLVIPAFSQIFVDEILVQ 187
Query: 699 EMQSRIRTYSLIFCSLSLISLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDE 758
Q +R L +L+ LQ Y + +L + R L IL +F
Sbjct: 188 GRQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFA- 246
Query: 759 EQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQP 818
Q +G + SR+ + + L + + V A++M L+ L ++ IA
Sbjct: 247 -QRHAGDIASRVQLNDQVAEFLSGQLATTALDAVMLVFYALLM-LLYDPVLTLIGIAFAA 304
Query: 819 LTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGS--------AGKVLQ 870
+ +L + + + T +A+ + + + + G AG +
Sbjct: 305 INVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAK 364
Query: 871 IFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGD--VFK 928
+ + QE L + LT ++ AL GG V +GQ++ G F+
Sbjct: 365 LLNAQQELGVLTQ----ILGVL----PTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQ 416
Query: 929 T----FFILVSTGKVIAEAGS---MTSDLAKGSTAVASVFKI-LDRQSLIPGSSQAGDGT 980
+ F V+ ++ G+ + DL + + V + +D + AG
Sbjct: 417 SLMSSFLEPVNN--LVGFGGTLQELEGDLNR----LDDVLRNPVDPLLEEEEAPAAGSEP 470
Query: 981 RGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLI 1040
++SG +E+R + F Y S + ++ FS+ ++PG V LVG SG GKST+ L+
Sbjct: 471 S----PRLSGYVELRNITFGY-SPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLV 525
Query: 1041 QRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEV 1100
Y G + DG+ E+ A+V Q+ ++ G +RDN+ + ++
Sbjct: 526 AGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADL 585
Query: 1101 VEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSA 1160
V A + A H+ I+S GY+ E E G LSGGQRQR+ IARA++RNP+IL+LDEATSA
Sbjct: 586 VRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSA 645
Query: 1161 LDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRG 1220
LD ++E+++ + L R G T I+VAHRL+TI+ D I ++ G+VV+RGT+ +L + G
Sbjct: 646 LDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGG 703
Query: 1221 AF 1222
A+
Sbjct: 704 AY 705
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 229 bits (585), Expect = 3e-64
Identities = 158/528 (29%), Positives = 264/528 (50%), Gaps = 52/528 (9%)
Query: 721 FNLLQHYNFAYMGGRLTKRIRLRMLEK----ILTFEAAWFDEEQNSSGALCSRLSNEASM 776
FN + + A RL R +L + I++ +W +++ +S AL + L ++
Sbjct: 68 FNTIAYVLVAREADRLAHGRRATLLTEAFGRIISMPLSW-HQQRGTSNALHTLLRATETL 126
Query: 777 VKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVST 836
L + + + T A+ + + + W+L++V++ L IL K+++
Sbjct: 127 F-GLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMV---LGILYILIAKLVMQ---- 178
Query: 837 NFVKAQNRSTQIAVE----AVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGI 892
+ ++ Q AVE V H V+ S V+ ++ + E + + L
Sbjct: 179 -----RTKNGQAAVEHHYHNVFKH--VSDSISNVSVVHSYNRIEAETSALKQFTNNLL-- 229
Query: 893 GMGSAQCLTFMSWALD---------------FWYGGTLVQKGQISAGDVFKTFFILVSTG 937
SAQ WAL G LV KG++S G+V FI +
Sbjct: 230 ---SAQYPVLDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIA--FIGFAN- 283
Query: 938 KVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRV 997
+I M+ + + A A + D + + + D +L + G +E R +
Sbjct: 284 LLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADA---PELPNVKGAVEFRHI 340
Query: 998 DFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMD 1057
F + + + S E K G +V +VG +G GK+T+I L+QR YD G + +DG+D
Sbjct: 341 TFEFANSSQGV--FDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGID 398
Query: 1058 VRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLK 1117
+ + RK A V Q+ ++ +IR+NI G+ A++ EV EAA+AA AH+FI
Sbjct: 399 INTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRS 458
Query: 1118 DGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM 1177
+GY+T GERG +LSGG+RQR+AIARAI++N IL+LDEATSALDV++E V+ A+D +
Sbjct: 459 NGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR 518
Query: 1178 MGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNL 1225
RTT ++AHRL+T++ D + + GR++E+G++ +L G F+ L
Sbjct: 519 KNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKL 566
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 229 bits (586), Expect = 2e-63
Identities = 125/421 (29%), Positives = 219/421 (52%), Gaps = 14/421 (3%)
Query: 795 VAIAMIMGLVVAWKLAVVMIAVQPLTILC-FYTRKVLLSSVSTNFVKAQNRSTQIAVEAV 853
+ IA+I L V + PL +L ++ L + ++ R + VE++
Sbjct: 278 LVIAII-----GGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQR-NAVLVESL 331
Query: 854 INHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMSWALDFWYGG 913
+ + + G+ + +++ + K +L+ + AQ + + G
Sbjct: 332 SGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGV 391
Query: 914 TLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGS 973
L+ G+++ G + +L +G+ +A G + L + A + + LD L+
Sbjct: 392 YLISDGELTMGGLIACV-ML--SGRALAPLGQLAGLLTRYQQAKTA-LQSLDE--LMQLP 445
Query: 974 SQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGK 1033
+ +GTR ++ G+IE R V FAYP + L S+ ++PG V ++G+ G GK
Sbjct: 446 VERPEGTRFLHRPRLQGEIEFRNVSFAYPGQETP-ALDNVSLTIRPGEKVAIIGRIGSGK 504
Query: 1034 STVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKL 1093
ST++ L+ Y +GSV +DG+D+R++D R++ V Q+P ++ G +RDNI G
Sbjct: 505 STLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAP 564
Query: 1094 DASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILL 1153
A + E++ AA A EF+ DG + + GERG LSGGQRQ +A+ARA++R+P ILL
Sbjct: 565 YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILL 624
Query: 1154 LDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYA 1213
LDE TSA+D +SE+ ++ L R + G+T ++V HR + + +D I ++ +GR+V G
Sbjct: 625 LDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKD 684
Query: 1214 Q 1214
Q
Sbjct: 685 Q 685
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 223 bits (571), Expect = 2e-62
Identities = 135/463 (29%), Positives = 218/463 (47%), Gaps = 31/463 (6%)
Query: 132 TSEVINSISKDTSLIQEL-LSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLL--L 188
+ +++N + D + L L P V + + + S +FS L+L+ LL L
Sbjct: 114 SGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLS-FFSIPLALLLGLILLLLL 172
Query: 189 LIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVY--------SFSAERRIIDR 240
LIIP L +A +++G A AL S T + F AE
Sbjct: 173 LIIP---------TLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTA 223
Query: 241 YEAILDSTTKLGIKQGTAKGLAVGSTGLS--FAIWAFLAWYGSHLVMFKGETGGKIYAAG 298
EA S K KQ GL+ L + L W + + G A
Sbjct: 224 LEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGA--GALAQPGAALA 281
Query: 299 ISFILSGLSLGSAL-PELKYFTEASI-AASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIE 356
+ I + L L P I +A R+ D +D+ PE+ D + + +E
Sbjct: 282 LLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDEQTATTGQA---LE 338
Query: 357 FEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRI 416
+V F+YP + LK+FNL + G+ VA++G SGSGKST + L+ +D G + +
Sbjct: 339 LRNVSFTYPGQQTK-ALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITL 397
Query: 417 DGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFI 476
+GV+I L + +R + +++Q LF +++DN+ DA+ +E+ AA +
Sbjct: 398 NGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLL 457
Query: 477 RQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNAL 536
P+G T +GE G LSGG+++R+A+ARA++ + + LLDE T LD +E V L
Sbjct: 458 ESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALL 517
Query: 537 DQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLI 579
+ + G+T L+V H+L + D I V+DNG ++E GTH +L+
Sbjct: 518 FEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELL 560
|
Length = 573 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 222 bits (568), Expect = 3e-62
Identities = 103/288 (35%), Positives = 162/288 (56%), Gaps = 8/288 (2%)
Query: 942 EAGSMTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAY 1001
+ GS A G A +F +L+ PGS + + ++ I + + F Y
Sbjct: 276 DLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIE-----ISLENLSFRY 330
Query: 1002 PSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVREL 1061
P L ++ +K G LVG SG GKST++ L+ F QG +RV+G+D+R+L
Sbjct: 331 PDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDL 388
Query: 1062 DVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYE 1121
+RK + VSQ P ++AG IR+NI+ + DAS+ E++ A A EF+ DG +
Sbjct: 389 SPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLD 447
Query: 1122 TECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRT 1181
T GE G LSGGQ QR+A+ARA++ ++LLLDE T+ LD ++EQ++ +AL + +T
Sbjct: 448 TVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKT 507
Query: 1182 TIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLATLQ 1229
+V+ HRL D I ++ +GR+VE+GT+ +L+ +G + NL Q
Sbjct: 508 VLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQ 555
|
Length = 559 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 220 bits (563), Expect = 2e-61
Identities = 157/478 (32%), Positives = 241/478 (50%), Gaps = 62/478 (12%)
Query: 158 VMNASVFISGLAFSTYFSWRLSLVAFPTLLLLIIPGMI-----YGKYLIYLSKKAYKEYG 212
VM +V I ST SW+L+L+A LL +P M YG L K A +
Sbjct: 122 VMGCAVLI---VMSTQISWQLTLLA-----LLPMPVMAIMIKRYGDQLHERFKLAQAAFS 173
Query: 213 KANAIVEQALSSIKTVYSFSAERRIIDRYEAI-----------------LDSTTKLGIKQ 255
N +++L+SI+ + +F E R + A D T + I
Sbjct: 174 SLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAI-- 231
Query: 256 GTAKGLAVGSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILS-GLSLGSALPE 314
G A LA+G GS +V+ T G++ SF++ GL + L
Sbjct: 232 GMANLLAIGG--------------GSWMVVNGSLTLGQL----TSFVMYLGLMIWPMLAL 273
Query: 315 LKYFT---EASIAASRIFDRIDRVPEI-DGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDS 370
F S A SRI + P + DG + + E RGE++ +F+YP D
Sbjct: 274 AWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEP----VPEGRGELDVNIRQFTYPQT-DH 328
Query: 371 IVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVR 430
L++ N +K G+ + + G +GSGKST ++L+QR +D +G +R + + +LQL R
Sbjct: 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWR 388
Query: 431 REMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGER 490
+ +VSQ LF ++ +NI G+ DAT E+ A A+ H+ I +LP+GY+T+VGER
Sbjct: 389 SRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGER 448
Query: 491 GALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAH 550
G +LSGGQKQRI+IARA++ N IL+LD+A SA+D +E + + L Q GRT ++ AH
Sbjct: 449 GVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAH 508
Query: 551 KLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQR-QFSCDDQETIPET 607
+LS + A I V+ +G + + G H+ L + G Y M + Q+ + + DD I E
Sbjct: 509 RLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQLEAALDDAPEIREE 565
|
Length = 569 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 229 bits (584), Expect = 7e-61
Identities = 164/571 (28%), Positives = 286/571 (50%), Gaps = 78/571 (13%)
Query: 67 NFLDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDS 126
N + V V +G+ +++F+ +C + + + ++ ++L++V Q+ F D+
Sbjct: 91 NLGENVNDIIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDN 150
Query: 127 QDATT-TSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPT 185
+ TS++ + + + I ++ + IF AS F+ +S + + RL+L
Sbjct: 151 NPGSKLTSDLDFYLEQVNAGIG---TKFITIFTY-ASAFLGLYIWSLFKNARLTLCITCV 206
Query: 186 LLLLIIPGMIYGKYLIYLSKKAYKEYGKAN-AIVEQALSSIKTVYSFSAERRIIDRYEAI 244
L+ I G+I K + ++KK Y +I+E+AL I+TV S+ E+ I+ ++
Sbjct: 207 FPLIYICGVICNKK-VKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLS 265
Query: 245 LDSTTKLGIKQGTAKGLAVGS-TGLSFAIWAFLAWYGSHLVMFKGET--------GGKIY 295
+K +K + L +G G A +AF WYG+ +++ GG +
Sbjct: 266 EKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVI 325
Query: 296 AAGISFILSGLSLGSALPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEI 355
+ + ++S L LP + + ++ A + +++ I+R P ++ D G L +++ +I
Sbjct: 326 SILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENND-DGKKLKDIK-KI 383
Query: 356 EFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVR 415
+F++V+F Y +R D + KD N + GK+ A VG SG GKST + L++R YD +G +
Sbjct: 384 QFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDII 443
Query: 416 I-DGVDIRRLQLKWVRREMGLVSQEHALFGTS-----------IKD-------------- 449
I D +++ + LKW R ++G+VSQ+ LF S +KD
Sbjct: 444 INDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGND 503
Query: 450 -------------------NIMFGKLDATM-------------DEVIAAATAANAHNFIR 477
N M D+ EV+ + H+F+
Sbjct: 504 SQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVS 563
Query: 478 QLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALD 537
LP+ YET VG + LSGGQKQRI+IARAII+NP IL+LDEATS+LD++SE LVQ ++
Sbjct: 564 ALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTIN 623
Query: 538 --QASLGRTTLVVAHKLSTVRNADLIAVVDN 566
+ + R T+++AH+LST+R A+ I V+ N
Sbjct: 624 NLKGNENRITIIIAHRLSTIRYANTIFVLSN 654
|
Length = 1466 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 228 bits (582), Expect = 1e-60
Identities = 157/611 (25%), Positives = 279/611 (45%), Gaps = 77/611 (12%)
Query: 662 KQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAF 721
K I +LS + G + P +AL +S F ++ E S YSL +++
Sbjct: 825 KDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSN--KYSLYILVIAIAMFIS 882
Query: 722 NLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLV 781
L++Y +G ++ K ++ R+ E IL E ++FD+++++ G L + ++ + ++K+ +
Sbjct: 883 ETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGL 942
Query: 782 ADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKA 841
+ + + ++M+M +A V+ + + F R L ++ K
Sbjct: 943 VNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVE-KKE 1001
Query: 842 QNRSTQIAV----------------EAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARK 885
N+ + EA N V +G + ++A + K ++
Sbjct: 1002 INQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKR 1061
Query: 886 KSWLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGS 945
K+ + + G +Q + +W+G L+++G I D K+ F + TG + S
Sbjct: 1062 KTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMS 1121
Query: 946 MTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRP 1005
+ D + + ++ R+S I G + I GKIE+ V+F Y SRP
Sbjct: 1122 LKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKND--IKGKIEIMDVNFRYISRP 1179
Query: 1006 DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV------------------- 1046
+ + + + + +VG++G GKSTV+ L+ RFYD+
Sbjct: 1180 NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNE 1239
Query: 1047 --EQGS---------------------------------VRVDGMDVRELDVHWYRKHTA 1071
QG + +DG+D+ + ++ R +
Sbjct: 1240 QDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFS 1299
Query: 1072 LVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQL 1131
+VSQEP+++ +I +NI FGK DA+ +V A + A EFI SL + Y+T G G L
Sbjct: 1300 IVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSL 1359
Query: 1132 SGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRI--MMGRTTIVVAHRL 1189
SGGQ+QRIAIARA++R P ILLLDEATS+LD SE+++++ + I +T I +AHR+
Sbjct: 1360 SGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRI 1419
Query: 1190 NTIKKLDSIAL 1200
+IK+ D I +
Sbjct: 1420 ASIKRSDKIVV 1430
|
Length = 1466 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 211 bits (540), Expect = 3e-58
Identities = 81/214 (37%), Positives = 135/214 (63%), Gaps = 5/214 (2%)
Query: 1014 SMEVKPGTSVGLVGKSGCGKSTVIGLIQRF--YDVEQGSVRVDGMDVRELDVHWYRKHTA 1071
+ + G + LVG SG GK++++ + F Y QGS++++G+++RELD +RKH +
Sbjct: 370 NFTLPAGQRIALVGPSGAGKTSLLNALLGFLPY---QGSLKINGIELRELDPESWRKHLS 426
Query: 1072 LVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQL 1131
V Q P + G +RDN++ G DAS+ ++ +A A EF+ L G +T G++ L
Sbjct: 427 WVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGL 486
Query: 1132 SGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNT 1191
S GQ QR+A+ARA+++ +LLLDE T++LD SEQ+V +AL+ +TT++V H+L
Sbjct: 487 SVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLED 546
Query: 1192 IKKLDSIALVADGRVVERGTYAQLTHMRGAFFNL 1225
+ + D I ++ DG++V++G YA+L+ G F L
Sbjct: 547 LAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATL 580
|
Length = 588 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 199 bits (508), Expect = 4e-58
Identities = 82/224 (36%), Positives = 137/224 (61%), Gaps = 6/224 (2%)
Query: 990 GKIEMRRVDFAYPSRPD-ALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQ 1048
G IE + V Y RP+ VL+ S +KPG VG+VG++G GKS+++ + R ++
Sbjct: 1 GDIEFKNVSLRY--RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58
Query: 1049 GSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNI-VFGKLDASENEVVEAARAA 1107
GS+ +DG+D+ ++ +H R +++ Q+PV+++G IR N+ FG+ S+ E+ +A
Sbjct: 59 GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE--YSDEELWQALERV 116
Query: 1108 NAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQ 1167
EF+ SL G +T E G LS GQRQ + +ARA++R IL+LDEAT+++D +++
Sbjct: 117 GLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 176
Query: 1168 VVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGT 1211
++Q+ + T + +AHRL+TI D I ++ GRVVE +
Sbjct: 177 LIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 206 bits (526), Expect = 7e-57
Identities = 89/246 (36%), Positives = 130/246 (52%), Gaps = 4/246 (1%)
Query: 319 TEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNL 378
+ AA +F +D P V +EF V +YP R L+ +
Sbjct: 288 ADGVAAAEALFAVLDAAPRPLAGKAP--VTAAPAPSLEFSGVSVAYPGRRP--ALRPVSF 343
Query: 379 KVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQ 438
V G+ VALVG SG+GKST + L+ F D +G + ++GV + R ++ V Q
Sbjct: 344 TVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQ 403
Query: 439 EHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQ 498
LF +I +NI + DA+ E+ A A F+ LP+G +T +GE GA LSGGQ
Sbjct: 404 HPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQ 463
Query: 499 KQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNA 558
QR+A+ARA +++ +LLLDE T+ LD+E+E V AL + GRT L+V H+L+ A
Sbjct: 464 AQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALA 523
Query: 559 DLIAVV 564
D I V+
Sbjct: 524 DRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 206 bits (525), Expect = 2e-56
Identities = 79/244 (32%), Positives = 143/244 (58%), Gaps = 1/244 (0%)
Query: 982 GSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQ 1041
+ +E+R V F YP + L+ F++ + G V ++G+SG GKST++ L+
Sbjct: 327 DEQTATTGQALELRNVSFTYPGQQ-TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLA 385
Query: 1042 RFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVV 1101
+D +QGS+ ++G+++ LD R+ ++++Q +++G +RDN+ DAS+ E+
Sbjct: 386 GAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELW 445
Query: 1102 EAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSAL 1161
A + + + S DG T GE G +LSGG+R+R+A+ARA++ + + LLDE T L
Sbjct: 446 AALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGL 505
Query: 1162 DVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGA 1221
D +E+ V L G+T ++V HRL ++++D I ++ +G+++E GT+A+L G
Sbjct: 506 DPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGR 565
Query: 1222 FFNL 1225
+ L
Sbjct: 566 YKRL 569
|
Length = 573 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 206 bits (526), Expect = 9e-56
Identities = 157/529 (29%), Positives = 255/529 (48%), Gaps = 43/529 (8%)
Query: 715 SLISLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEA 774
++ + AF L Q + R+ ++ + +++L ++F Q S+G L SR
Sbjct: 186 AVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFF--RQYSTGDLASRAMG-I 242
Query: 775 SMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSV 834
S ++ +++ + + + + + +WKLA+V +A+ + I L+ +
Sbjct: 243 SQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVT-----LVLGL 297
Query: 835 STNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKV-------------LQIFDEAQEEPRK 881
V+ + R + + I+ V K+ ++F ++
Sbjct: 298 LQ--VRKERR--LLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELS 353
Query: 882 QARKKSWLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIA 941
R ++ L A S AL F +L+ +S G F F + G
Sbjct: 354 AQRIENLLTVFN---AVLPVLTSAAL-FAAAISLLGGAGLSLGS-FLAFNT--AFGSFSG 406
Query: 942 EAGSMTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAY 1001
+++ L ++ +V + +R I + D + + K+SG IE+ RV F Y
Sbjct: 407 AVTQLSNTL----ISILAVIPLWERAKPILEALPEVDEAK-TDPGKLSGAIEVDRVTFRY 461
Query: 1002 PSRPDA-LVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRE 1060
RPD L+L S++++PG V +VG SG GKST++ L+ F E GSV DG D+
Sbjct: 462 --RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAG 519
Query: 1061 LDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGY 1120
LDV R+ +V Q + +G+I +NI G + +E EAAR A E I ++ G
Sbjct: 520 LDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGM 578
Query: 1121 ETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGR 1180
T E G LSGGQRQR+ IARA++R P ILL DEATSALD +++ +V E+L+R +
Sbjct: 579 HTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLER--LKV 636
Query: 1181 TTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLATLQ 1229
T IV+AHRL+TI+ D I ++ GRVV++GTY +L G F LA Q
Sbjct: 637 TRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLARRQ 685
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 191 bits (487), Expect = 3e-55
Identities = 81/224 (36%), Positives = 135/224 (60%), Gaps = 6/224 (2%)
Query: 353 GEIEFEHVKFSYPSRPDS-IVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADD 411
G+IEF++V Y RP+ VLK+ + +K G+ V +VG +GSGKS+ + + R +
Sbjct: 1 GDIEFKNVSLRY--RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58
Query: 412 GIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNI-MFGKLDATMDEVIAAATAA 470
G + IDGVDI ++ L +R + ++ Q+ LF +I+ N+ FG+ + +E+ A
Sbjct: 59 GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE--YSDEELWQALERV 116
Query: 471 NAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESET 530
F+ LP G +T V E G LS GQ+Q + +ARA+++ IL+LDEAT+++D E++
Sbjct: 117 GLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 176
Query: 531 LVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGT 574
L+Q + +A T L +AH+L T+ ++D I V+D G +VE +
Sbjct: 177 LIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 198 bits (505), Expect = 7e-54
Identities = 97/269 (36%), Positives = 152/269 (56%), Gaps = 9/269 (3%)
Query: 952 KGSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLR 1011
+GS A + + +L ++ S+ RG I F YP D L
Sbjct: 282 RGSAAYSRIRAMLAEAPVVKDGSEPVPEGRGELDVNIR--------QFTYPQT-DHPALE 332
Query: 1012 QFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071
+ +KPG +G+ G +G GKST++ LIQR +DV +G +R + + +L + +R A
Sbjct: 333 NVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLA 392
Query: 1072 LVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQL 1131
+VSQ P +++ + +NI G+ DA++ E+ AR A+ H+ I L GY+TE GERGV L
Sbjct: 393 VVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVML 452
Query: 1132 SGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNT 1191
SGGQ+QRI+IARA++ N IL+LD+A SA+D ++E + L + GRT I+ AHRL+
Sbjct: 453 SGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSA 512
Query: 1192 IKKLDSIALVADGRVVERGTYAQLTHMRG 1220
+ + I ++ G + +RG + QL G
Sbjct: 513 LTEASEILVMQHGHIAQRGNHDQLAQQSG 541
|
Length = 569 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 199 bits (507), Expect = 3e-53
Identities = 144/527 (27%), Positives = 273/527 (51%), Gaps = 37/527 (7%)
Query: 77 LYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVI 136
L Y+ ++ ++++ + + +R + I Y++ + + FF ++ T E++
Sbjct: 202 LIIAYIIQQIL--SYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTR---RTGEIV 256
Query: 137 NSISKDTSLIQELLSEKVPIFVMNASVFISG--LAFSTYFSWRLSLVAFPTLLLLIIPGM 194
+ + +S+I L S + +F+ + I G L + LSL++ P ++II
Sbjct: 257 SRFTDASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIII--- 313
Query: 195 IYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAE----RRIIDRYEAILDSTTK 250
++ + L+ A + N+ + + L+ I+T+ S ++E +I + L+ + K
Sbjct: 314 LFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFK 373
Query: 251 LGIKQGTAKGLAVGSTGLSFAIWAFLAWYGSHLVMFKGETGGKI--YAAGISFILSGL-S 307
Q +G + + W G++LVM T G++ + A +S+ L+ L +
Sbjct: 374 Y---QKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLEN 430
Query: 308 LGSALPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDE---VRGEIEFEHVKFSY 364
+ + P+L+ AA +R++ V +D E E + G+I V +SY
Sbjct: 431 IINLQPKLQ-------AARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSY 483
Query: 365 PSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRL 424
S +L D +L +K +VG SGSGKST L+ F+ A G + ++G ++ +
Sbjct: 484 GY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDI 541
Query: 425 QLKWVRREMGLVSQEHALFGTSIKDNIMFG-KLDATMDEVIAAATAANAHNFIRQLPEGY 483
+R+ + + QE +F SI +N++ G K + + DE+ AA A + I +P GY
Sbjct: 542 DRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGY 601
Query: 484 ETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESE-TLVQNALDQASLG 542
+T++ E G+ +SGGQKQRIA+ARA++ + +L+LDE+TS LD+ +E +V N L+
Sbjct: 602 QTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQD-- 659
Query: 543 RTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKM 589
+T + VAH+LS + +D I V+D+G ++E G+H++L++R +G YA +
Sbjct: 660 KTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDR-NGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 201 bits (512), Expect = 4e-52
Identities = 221/922 (23%), Positives = 391/922 (42%), Gaps = 120/922 (13%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAI-ALVQRFYDADDGI 413
I ++ FS+ S+ L D NL++ G VA+VG +G GK++ I A++ A+
Sbjct: 615 ISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS 674
Query: 414 VRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAH 473
V I G Q+ W+ F ++++NI+FG D + A
Sbjct: 675 VVIRGSVAYVPQVSWI-------------FNATVRENILFGS-DFESERYWRAIDVTALQ 720
Query: 474 NFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQ 533
+ + LP T++GERG +SGGQKQR+++ARA+ N I + D+ SALD+ V
Sbjct: 721 HDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVF 780
Query: 534 NALDQASL-GRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGT------HNDLINRIDGHY 586
++ + L G+T ++V ++L + D I +V G + E GT L ++ +
Sbjct: 781 DSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENA 840
Query: 587 AKMAKLQRQFSCDDQ--ETIPETHVSSVTRSSGGRLSAARSSPAIFASPLPVIDSPQPVT 644
KM Q + D+ + P + R+ G R
Sbjct: 841 GKMDATQEVNTNDENILKLGPTVTIDVSERNLGSTKQGKRG------------------- 881
Query: 645 YLPPSFFRLLSLNAPEWKQGLIGSLSAI----AVGSVQPTYALTIGGMISAFFAKSHSEM 700
R + + E + G+I + AVG + L + + + S S
Sbjct: 882 -------RSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTW 934
Query: 701 ------QSRIRTYS-----LIFCSLSLISLAFNLLQHYNFAYMGGRLTKRIRLRMLEKIL 749
QS ++YS +++ L +A + KR+ ML IL
Sbjct: 935 LSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSIL 994
Query: 750 TFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADR----VSLLVQTTSAVAIAMIMGLVV 805
+F N +G + +R S + + VA+ ++ L Q S A+ + +
Sbjct: 995 RAPMLFF--HTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTIS 1052
Query: 806 AWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIA-VEAVINHRIVTSFGS 864
W A+ PL IL FY ++ Q+ S ++ +++V I FG
Sbjct: 1053 LW-------AIMPLLIL-FYA----------AYLYYQSTSREVRRLDSVTRSPIYAQFGE 1094
Query: 865 AGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMSWALDFWY-------GGTLV- 916
A L + K + + + G M + T + + + W GG ++
Sbjct: 1095 ALNGL-----SSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIW 1149
Query: 917 --------QKGQISAGDVFKTF--FILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDR 966
+ G F + +L T + + +K ++ SV ++ +
Sbjct: 1150 LTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNY 1209
Query: 967 QSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAY-PSRPDALVLRQFSMEVKPGTSVGL 1025
L ++ + R G I+ V Y P P VL S V P VG+
Sbjct: 1210 IDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPP--VLHGLSFFVSPSEKVGV 1267
Query: 1026 VGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIR 1085
VG++G GKS+++ + R ++E+G + +D DV + + R+ +++ Q PV+++G +R
Sbjct: 1268 VGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVR 1327
Query: 1086 DNI-VFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARA 1144
NI F + ++ ++ EA A+ + I G + E E G S GQRQ +++ARA
Sbjct: 1328 FNIDPFS--EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARA 1385
Query: 1145 IIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADG 1204
++R IL+LDEAT+++DV+++ ++Q + T +V+AHRLNTI D I +++ G
Sbjct: 1386 LLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSG 1445
Query: 1205 RVVERGTYAQLTHMRG-AFFNL 1225
+V+E + +L AFF +
Sbjct: 1446 QVLEYDSPQELLSRDTSAFFRM 1467
|
Length = 1495 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 192 bits (490), Expect = 9e-52
Identities = 74/243 (30%), Positives = 141/243 (58%), Gaps = 2/243 (0%)
Query: 983 SKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQR 1042
S + + V F YP +P VL+ S+++K G V L+G++GCGKST++ L+ R
Sbjct: 330 STAAADQVSLTLNNVSFTYPDQPQP-VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTR 388
Query: 1043 FYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVE 1102
+D +QG + ++G + + R+ ++VSQ +++ +RDN++ +AS+ ++E
Sbjct: 389 AWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIE 448
Query: 1103 AARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALD 1162
+ + + G GE G QLSGG+++R+ IARA++ + +LLLDE T LD
Sbjct: 449 VLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLD 507
Query: 1163 VQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAF 1222
++E+ + E L +T +++ HRL +++ D I ++ +G+++E+GT+ +L +G +
Sbjct: 508 AETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRY 567
Query: 1223 FNL 1225
+ L
Sbjct: 568 YQL 570
|
Length = 574 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 189 bits (483), Expect = 2e-51
Identities = 100/325 (30%), Positives = 155/325 (47%), Gaps = 16/325 (4%)
Query: 236 RIIDRYEAILDSTTKLGIKQGTAKGLAVGSTGLSFAIWAFLA-WYGSHLVMFKGETGGKI 294
+ + E T+ + A L T L+ + A W G V G
Sbjct: 214 AALAQVEEADRELTRAERRAAAATALGAALTLLAAGLAVLGALWAGGPAVA-DGRLAPVT 272
Query: 295 YAAGISFILSGLSLGSALPEL----KYFTEASIAASRIFDRID---RVPEIDGEDTKGLV 347
A +L L+ A L + T AA RI + +D V E +
Sbjct: 273 LAV---LVLLPLAAFEAFAALPAAAQQLTRVRAAAERIVEVLDAAGPVAEGSAPAAGAVG 329
Query: 348 LDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFY 407
L + +E + YP VL +L + G+ VA++G SGSGKST +A +
Sbjct: 330 LGKPT--LELRDLSAGYP--GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLL 385
Query: 408 DADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAA 467
D G V +DGV + L VRR + + +Q+ LF T++++N+ + DAT +E+ AA
Sbjct: 386 DPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAAL 445
Query: 468 TAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSE 527
+++R LP+G +T +GE GA LSGG++QR+A+ARA++ + ILLLDE T LD+E
Sbjct: 446 ERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAE 505
Query: 528 SETLVQNALDQASLGRTTLVVAHKL 552
+ + L A GRT +++ H L
Sbjct: 506 TADELLEDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 197 bits (503), Expect = 3e-51
Identities = 147/571 (25%), Positives = 267/571 (46%), Gaps = 91/571 (15%)
Query: 707 YSLIFCSLSLISLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGAL 766
+SL+ + + + + + + ++ K ++L L+ + + + D N L
Sbjct: 101 FSLV--LIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHD--NNPGSKL 156
Query: 767 CSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILC--F 824
S L V + + + + SA I L +L + + V PL +C
Sbjct: 157 TSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVI 216
Query: 825 YTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQAR 884
+KV ++ ++ + N + I EA++ R V S+ +L+ F+ +++ K
Sbjct: 217 CNKKVKINKKTS--LLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYIL 274
Query: 885 KKSWLAGIGMGSAQCLTFMSWALDFWYGGTLV---QKGQISAGDVFKTFFILVSTGKVIA 941
K +++ + +G S+A FWYG ++ Q D I + G +I
Sbjct: 275 KANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLI- 333
Query: 942 EAGSM---------TSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKI 992
SM ++ K A S+++I++R+ L+ + G KL+ I KI
Sbjct: 334 ---SMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENNDD------GKKLKDIK-KI 383
Query: 993 EMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVR 1052
+ + V F Y +R D + + + + G + VG+SGCGKST++ LI+R YD +G +
Sbjct: 384 QFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDII 443
Query: 1053 V-DGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFG-----KLDASENEVVE---- 1102
+ D +++++++ W+R +VSQ+P++++ +I++NI + L+A N E
Sbjct: 444 INDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGND 503
Query: 1103 ---------AARAANA---------------------------------------HEFIS 1114
+ RA A H+F+S
Sbjct: 504 SQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVS 563
Query: 1115 SLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALD 1174
+L D YET G +LSGGQ+QRI+IARAIIRNP IL+LDEATS+LD +SE +VQ+ ++
Sbjct: 564 ALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTIN 623
Query: 1175 RIM--MGRTTIVVAHRLNTIKKLDSIALVAD 1203
+ R TI++AHRL+TI+ ++I ++++
Sbjct: 624 NLKGNENRITIIIAHRLSTIRYANTIFVLSN 654
|
Length = 1466 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 6e-51
Identities = 100/270 (37%), Positives = 155/270 (57%), Gaps = 12/270 (4%)
Query: 960 VFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKP 1019
VF+++D + G LQ SG+I++ V FAY R D LVL+ ++ V
Sbjct: 318 VFELMDG-------PRQQYGNDDRPLQ--SGRIDIDNVSFAY--RDDNLVLQNINLSVPS 366
Query: 1020 GTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVI 1079
V LVG +G GKST+ L+ +Y + +G +R+DG + L R+ A+V Q+PV+
Sbjct: 367 RGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVV 426
Query: 1080 YAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRI 1139
A N+ G+ D SE +V +A E SL DG T GE+G LS GQ+Q +
Sbjct: 427 LADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLL 485
Query: 1140 AIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIA 1199
A+AR +++ P IL+LDEAT+ +D +EQ +Q+AL + T +V+AHRL+TI + D+I
Sbjct: 486 ALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTIL 545
Query: 1200 LVADGRVVERGTYAQLTHMRGAFFNLATLQ 1229
++ G+ VE+GT+ QL +G ++ + LQ
Sbjct: 546 VLHRGQAVEQGTHQQLLAAQGRYWQMYQLQ 575
|
Length = 592 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 186 bits (475), Expect = 8e-50
Identities = 104/276 (37%), Positives = 159/276 (57%), Gaps = 10/276 (3%)
Query: 320 EASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLK 379
+A +A R+F+ +D + G D + L G I+ ++V F+Y R D++VL++ NL
Sbjct: 310 QAVVAGERVFELMDGPRQQYGNDDRPLQ----SGRIDIDNVSFAY--RDDNLVLQNINLS 363
Query: 380 VKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQE 439
V + VALVG +GSGKST +L+ +Y +G +R+DG + L +R+ + +V Q+
Sbjct: 364 VPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQD 423
Query: 440 HALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQK 499
+ + N+ G+ D + ++V A R LP+G T +GE+G LS GQK
Sbjct: 424 PVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQK 482
Query: 500 QRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVV-AHKLSTVRNA 558
Q +A+AR +++ P IL+LDEAT+ +DS +E +Q AL A TTLVV AH+LST+ A
Sbjct: 483 QLLALARVLVQTPQILILDEATANIDSGTEQAIQQAL-AAVREHTTLVVIAHRLSTIVEA 541
Query: 559 DLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQR 594
D I V+ G VE GTH L+ G Y +M +LQ
Sbjct: 542 DTILVLHRGQAVEQGTHQQLLAA-QGRYWQMYQLQL 576
|
Length = 592 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 184 bits (469), Expect = 4e-49
Identities = 87/272 (31%), Positives = 153/272 (56%), Gaps = 7/272 (2%)
Query: 324 AASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAG 383
+A RI + ++ PE+ T D + + +V F+YP +P VLK +L++KAG
Sbjct: 310 SARRINEITEQKPEVTFPTTSTAAAD--QVSLTLNNVSFTYPDQPQP-VLKGLSLQIKAG 366
Query: 384 KSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALF 443
+ VAL+G +G GKST + L+ R +D G + ++G I +R+ + +VSQ LF
Sbjct: 367 EKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLF 426
Query: 444 GTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIA 503
+++DN++ +A+ + +I + + +G +GE G LSGG+++R+
Sbjct: 427 SATLRDNLLLAAPNASDEALIEVLQQVGLEKLL-EDDKGLNAWLGEGGRQLSGGEQRRLG 485
Query: 504 IARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAV 563
IARA++ + +LLLDE T LD+E+E + L + + +T L++ H+L+ + D I V
Sbjct: 486 IARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICV 545
Query: 564 VDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQ 595
+DNG ++E GTH +L+ + G Y ++ QR
Sbjct: 546 MDNGQIIEQGTHQELLAQ-QGRYYQL--KQRL 574
|
Length = 574 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 183 bits (467), Expect = 4e-49
Identities = 101/315 (32%), Positives = 168/315 (53%), Gaps = 17/315 (5%)
Query: 274 AFLAWYGSHLVMFKGE-TGGKIYAAGISFILSGLSLG---SALPELKYFTEASIAASRIF 329
L G++L + GE T G + A I L G +L A+ K F+ A A R+
Sbjct: 241 LVLGL-GAYLAI-DGEITPGMMIAGSI---LVGRALAPIDGAIGGWKQFSGARQAYKRLN 295
Query: 330 DRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALV 389
+ + P D + L E G + E+V P L+ + ++AG+++A++
Sbjct: 296 ELLANYPSRD----PAMPLPEPEGHLSVENVTIVPPG-GKKPTLRGISFSLQAGEALAII 350
Query: 390 GASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKD 449
G SGSGKST L+ + G VR+DG D+++ + + +G + Q+ LF ++ +
Sbjct: 351 GPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAE 410
Query: 450 NIM-FGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAI 508
NI FG+ +A +++I AA A H I +LP+GY+T +G GA LSGGQ+QRIA+ARA+
Sbjct: 411 NIARFGE-NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARAL 469
Query: 509 IKNPVILLLDEATSALDSESETLVQNALDQASL-GRTTLVVAHKLSTVRNADLIAVVDNG 567
+P +++LDE S LD E E + NA+ G T +V+ H+ S + D I V+ +G
Sbjct: 470 YGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDG 529
Query: 568 CLVEIGTHNDLINRI 582
+ G ++++ ++
Sbjct: 530 RIARFGERDEVLAKL 544
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 184 bits (469), Expect = 6e-49
Identities = 75/212 (35%), Positives = 128/212 (60%), Gaps = 5/212 (2%)
Query: 369 DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRF--YDADDGIVRIDGVDIRRLQL 426
+ N + AG+ +ALVG SG+GK++ + + F Y G ++I+G+++R L
Sbjct: 362 GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQ---GSLKINGIELRELDP 418
Query: 427 KWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETK 486
+ R+ + V Q L +++DN++ G DA+ +++ A A F+ LP+G +T
Sbjct: 419 ESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTP 478
Query: 487 VGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTL 546
+G++ A LS GQ QR+A+ARA+++ +LLLDE T++LD+ SE LV AL+ AS +TTL
Sbjct: 479 IGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTL 538
Query: 547 VVAHKLSTVRNADLIAVVDNGCLVEIGTHNDL 578
+V H+L + D I V+ +G +V+ G + +L
Sbjct: 539 MVTHQLEDLAQWDQIWVMQDGQIVQQGDYAEL 570
|
Length = 588 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 183 bits (466), Expect = 1e-48
Identities = 118/392 (30%), Positives = 202/392 (51%), Gaps = 31/392 (7%)
Query: 205 KKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAI----LDSTTKLGIKQGTAKG 260
K+A + +AN + + L + + + + + R+ L + + + G
Sbjct: 188 KEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNG---A 244
Query: 261 LAVGSTGLSFAIW-AFLAWYGSHLVMFKGE-TGGKIYAAGISFILSGLSLG---SALPEL 315
S L A+ A L G+ LV+ KGE T G + A ILSG +L A+
Sbjct: 245 FGALSRALRMALQSAVLGL-GAWLVI-KGEITPGMMIA---GSILSGRALAPIDLAIANW 299
Query: 316 KYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKD 375
K F +AA + + R++ + + + L +G + E + + P + +LK
Sbjct: 300 KQF----VAARQSYKRLNELLAELPAAAERMPLPAPQGALSVERLTAAPPGQK-KPILKG 354
Query: 376 FNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREM-- 433
+ ++AG+++ ++G SGSGKST L+ + G VR+DG D+R+ W R ++
Sbjct: 355 ISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQ----WDREQLGR 410
Query: 434 --GLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERG 491
G + Q+ LF +I +NI +A ++VI AA A H I +LP+GY+T++GE G
Sbjct: 411 HIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGG 470
Query: 492 ALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQA-SLGRTTLVVAH 550
A LSGGQ+QRIA+ARA+ +P +++LDE S LDSE E + A+ A + G T +V+AH
Sbjct: 471 ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAH 530
Query: 551 KLSTVRNADLIAVVDNGCLVEIGTHNDLINRI 582
+ S + + D I V+ +G + G +++ ++
Sbjct: 531 RPSALASVDKILVLQDGRIAAFGPREEVLAKV 562
|
Length = 580 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 177 bits (451), Expect = 4e-47
Identities = 82/230 (35%), Positives = 129/230 (56%), Gaps = 4/230 (1%)
Query: 984 KLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRF 1043
L + G + + V P LR S ++ G ++ ++G SG GKST+ LI
Sbjct: 309 PLPEPEGHLSVENVTIVPPG-GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGI 367
Query: 1044 YDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIV-FGKLDASENEVVE 1102
+ GSVR+DG D+++ D + KH + Q+ ++ G + +NI FG+ +A +++E
Sbjct: 368 WPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGE-NADPEKIIE 426
Query: 1103 AARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALD 1162
AA+ A HE I L DGY+T G G LSGGQRQRIA+ARA+ +P +++LDE S LD
Sbjct: 427 AAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLD 486
Query: 1163 VQSEQVVQEALDRI-MMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGT 1211
+ EQ + A+ + G T +V+ HR + + +D I ++ DGR+ G
Sbjct: 487 EEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGE 536
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 178 bits (452), Expect = 4e-46
Identities = 135/575 (23%), Positives = 272/575 (47%), Gaps = 69/575 (12%)
Query: 683 LTIGGMISAFFAKSHSEMQSRIRTY--SLIFCSLSLISLA----------FNLLQHYNFA 730
+T+ + +++ +Q I TY + +L +IS+ + +Q +
Sbjct: 168 VTLISIAGSYY------LQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLN 221
Query: 731 YMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQ 790
+G RL+ I L ++ + ++F + +G + SR ++ +S++ +L + +SL +
Sbjct: 222 VLGQRLSIDIILSYIKHLFELPMSFFSTRR--TGEIVSRFTDASSIIDALASTILSLFLD 279
Query: 791 TTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQ---NRS-- 845
V + + + + ++++ P+ + K + ++ + ++A N S
Sbjct: 280 MWILVIVGLFLVRQNMLLFLLSLLSI-PVYAVIIILFKRTFNKLNHDAMQANAVLNSSII 338
Query: 846 ---------TQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGS 896
+ EA +I + FG + F + + +QA K +
Sbjct: 339 EDLNGIETIKSLTSEAERYSKIDSEFGDYLN--KSFKYQKADQGQQAIK----------A 386
Query: 897 AQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVS-----TGKVIAEAGSMTSDLA 951
L L W G LV +G+++ G + TF L+S +I ++ L
Sbjct: 387 VTKLILNVVIL--WTGAYLVMRGKLTLGQLI-TFNALLSYFLTPLENII----NLQPKLQ 439
Query: 952 KGSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLR 1011
A L+ L+ S+ + + ++L ++G I + V ++Y + +L
Sbjct: 440 AARVA----NNRLNEVYLVD--SEFINKKKRTELNNLNGDIVINDVSYSYGY--GSNILS 491
Query: 1012 QFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071
S+ +K + +VG SG GKST+ L+ F+ G + ++G ++++D H R+
Sbjct: 492 DISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFIN 551
Query: 1072 LVSQEPVIYAGNIRDNIVFG-KLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQ 1130
+ QEP I++G+I +N++ G K + S++E+ A A + I ++ GY+TE E G
Sbjct: 552 YLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSS 611
Query: 1131 LSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLN 1190
+SGGQ+QRIA+ARA++ + +L+LDE+TS LD +E+ + L + +T I VAHRL+
Sbjct: 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN-LQDKTIIFVAHRLS 670
Query: 1191 TIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNL 1225
K+ D I ++ G+++E+G++ +L G + +L
Sbjct: 671 VAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 4e-46
Identities = 112/469 (23%), Positives = 202/469 (43%), Gaps = 35/469 (7%)
Query: 735 RLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSA 794
R +R+R+ E++ A + G L RL + ++ L V ++V A
Sbjct: 83 RSLGALRVRVYERLARQALAGR--RRLRRGDLLGRLGADVDALQDLY---VRVIVPAGVA 137
Query: 795 VAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRS--------T 846
+ + +A L+V + +L + VS +A ++
Sbjct: 138 LVVGAAAVAAIAV-LSVPAALILAAGLLLAG---FVAPLVSLRAARAAEQALARLRGELA 193
Query: 847 QIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMSWA 906
+A+ + + G+ L +EA E + R+ + +G ++
Sbjct: 194 AQLTDALDGAAELVASGALPAALAQVEEADRELTRAERRAAAATALGAALTLLAAGLAVL 253
Query: 907 LDFWYGGTLVQKGQISAGDVFKTFFILVS------TGKVIAEAGSMTSDLAKGSTAVASV 960
W GG V G+++ V +L+ + A A +T A +
Sbjct: 254 GALWAGGPAVADGRLAP--VTLAVLVLLPLAAFEAFAALPAAAQQLTR----VRAAAERI 307
Query: 961 FKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPG 1020
++LD + S G G + E+R + YP VL S+++ PG
Sbjct: 308 VEVLDAAGPVAEGSAPAAGAVGLGKPTL----ELRDLSAGYP--GAPPVLDGVSLDLPPG 361
Query: 1021 TSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIY 1080
V ++G SG GKST++ + D QG V +DG+ V LD R+ ++ +Q+ ++
Sbjct: 362 ERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLF 421
Query: 1081 AGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIA 1140
+R+N+ + DA++ E+ A +++ +L DG +T GE G +LSGG+RQR+A
Sbjct: 422 DTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLA 481
Query: 1141 IARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRL 1189
+ARA++ + ILLLDE T LD ++ + E L + GRT +++ H L
Sbjct: 482 LARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 2e-45
Identities = 81/218 (37%), Positives = 126/218 (57%), Gaps = 2/218 (0%)
Query: 990 GKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQG 1049
G + + R+ A P + +L+ S ++ G ++G++G SG GKST+ L+ + G
Sbjct: 333 GALSVERLTAAPPGQK-KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSG 391
Query: 1050 SVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANA 1109
SVR+DG D+R+ D +H + Q+ ++ G I +NI +A +V+EAAR A
Sbjct: 392 SVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGV 451
Query: 1110 HEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVV 1169
HE I L GY+T GE G LSGGQRQRIA+ARA+ +P +++LDE S LD + E +
Sbjct: 452 HELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAAL 511
Query: 1170 QEALDRI-MMGRTTIVVAHRLNTIKKLDSIALVADGRV 1206
A+ G T +V+AHR + + +D I ++ DGR+
Sbjct: 512 AAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRI 549
|
Length = 580 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 9e-44
Identities = 72/216 (33%), Positives = 106/216 (49%), Gaps = 44/216 (20%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
+E+ V F YP + VLR S ++PG S+ ++G SG GKST+ LI G V
Sbjct: 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHE 1111
R+DG D+ + D + H + Q+ +++G+I +NI
Sbjct: 60 RLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI----------------------- 96
Query: 1112 FISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQE 1171
LSGGQRQR+ +ARA+ NP IL+LDE S LDV+ E+ + +
Sbjct: 97 -------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ 137
Query: 1172 ALDRI-MMGRTTIVVAHRLNTIKKLDSIALVADGRV 1206
A+ + G T IV+AHR T+ D I ++ DGRV
Sbjct: 138 AIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 3e-41
Identities = 80/240 (33%), Positives = 124/240 (51%), Gaps = 29/240 (12%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQ--- 1048
IE+R ++ Y + L+ S+++ G L+G SGCGKST++ L+ R D+
Sbjct: 1 IELRDLNVYYGDKH---ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 1049 --GSVRVDGMDVRELDVH--WYRKHTALVSQEPVIYAGNIRDNIVFG------KLDASEN 1098
G V +DG D+ +LDV R+ +V Q+P + G+I DN+ +G KL +
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 1099 EVVEAA--RAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDE 1156
E VE A +AA E L + LSGGQ+QR+ +ARA+ P +LLLDE
Sbjct: 118 ERVEEALRKAALWDEVKDRLH----------ALGLSGGQQQRLCLARALANEPEVLLLDE 167
Query: 1157 ATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
TSALD S ++E + + T ++V H + ++ D A + +GR+VE G Q+
Sbjct: 168 PTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 165 bits (418), Expect = 5e-41
Identities = 130/506 (25%), Positives = 246/506 (48%), Gaps = 41/506 (8%)
Query: 737 TKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVA 796
++ + +L L ++F E+ SG L +R S E V S++ + + + + V
Sbjct: 1037 SRVLHQDLLHNKLRSPMSFF--ERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVI 1094
Query: 797 IAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINH 856
A+I+ +++A +A V+I PL +L F+ ++ ++S + R ++ V +H
Sbjct: 1095 GALIV-ILLATPIAAVIIP--PLGLLYFFVQRFYVASS-----RQLKRLESVSRSPVYSH 1146
Query: 857 RIVTSFGSAGKVLQIFDEA-----QEEPRKQARKKS---------WLAGIGMGSAQCLTF 902
T G + V++ F+E Q + + +K+ WLA C+
Sbjct: 1147 FNETLLGVS--VIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVL 1204
Query: 903 MSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFK 962
+ ++ + +SAG V + + + M+S++ AV + +
Sbjct: 1205 FAALF------AVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKE 1258
Query: 963 ILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDA-LVLRQFSMEVKPGT 1021
+ + P Q T G++E R ++ R D LVLR ++ + G
Sbjct: 1259 YSETEKEAPWQIQ---ETAPPSGWPPRGRVEFR--NYCLRYREDLDLVLRHINVTIHGGE 1313
Query: 1022 SVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYA 1081
VG+VG++G GKS++ + R + +G + +DG+++ ++ +H R ++ Q+PV+++
Sbjct: 1314 KVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFS 1373
Query: 1082 GNIRDNI-VFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIA 1140
G++R N+ F + S+ EV A A+ F+S+L D + EC E G LS GQRQ +
Sbjct: 1374 GSLRMNLDPFSQY--SDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVC 1431
Query: 1141 IARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIAL 1200
+ARA++R IL+LDEAT+A+D++++ ++Q + T + +AHRLNTI + +
Sbjct: 1432 LARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIV 1491
Query: 1201 VADGRVVERGTYAQLTHMRGAFFNLA 1226
+ G V E G + L RG F+++A
Sbjct: 1492 LDKGEVAEFGAPSNLLQQRGIFYSMA 1517
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 8e-41
Identities = 84/235 (35%), Positives = 119/235 (50%), Gaps = 29/235 (12%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDA----- 409
IE + Y D LKD +L + G+ AL+G SG GKST + L+ R D
Sbjct: 1 IELRDLNVYYG---DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 410 DDGIVRIDGVDIRRLQLK--WVRREMGLVSQEHALFGTSIKDNIMFG------KLDATMD 461
D+G V +DG DI L + +RR +G+V Q+ F SI DN+ +G KL +D
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 462 EVIAAA--TAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDE 519
E + A AA L + + ++ G LSGGQ+QR+ +ARA+ P +LLLDE
Sbjct: 118 ERVEEALRKAA--------LWDEVKDRLHALG--LSGGQQQRLCLARALANEPEVLLLDE 167
Query: 520 ATSALDSESETLVQNALDQASLGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIG 573
TSALD S ++ + + T ++V H + R AD A + NG LVE G
Sbjct: 168 PTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFG 222
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 2e-40
Identities = 72/224 (32%), Positives = 123/224 (54%), Gaps = 24/224 (10%)
Query: 990 GKIEMRRVDFAY-PSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQ 1048
G+IE+ + Y P P VL+ S +VK G +G+VG++G GKST+I + RF + E+
Sbjct: 5 GEIEVENLSVRYAPDLPP--VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 1049 GSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNI-VFGKLDASENEVVEAARAA 1107
G + +DG+D+ + + R ++ Q+P +++G IR N+ F + S+ E+ A R +
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEY--SDEEIYGALRVS 120
Query: 1108 NAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQ 1167
E G+ LS GQRQ + +ARA+++ P +L+LDEAT+++D ++
Sbjct: 121 ------------------EGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162
Query: 1168 VVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGT 1211
++Q+ + T + +AHRL TI D I ++ G V E
Sbjct: 163 LIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 146 bits (372), Expect = 6e-40
Identities = 75/224 (33%), Positives = 111/224 (49%), Gaps = 30/224 (13%)
Query: 992 IEMRRVDFAYPSRPD--ALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQG 1049
I + F + S + L+ ++EV G V +VG G GKS+++ + + G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 1050 SVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGK-LDASE-NEVVEAARAA 1107
SV V G A VSQEP I G IR+NI+FGK D +V++A
Sbjct: 61 SVSVPG-------------SIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKAC--- 104
Query: 1108 NA-HEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQS- 1165
A + L DG TE GE+G+ LSGGQ+QRI++ARA+ + I LLD+ SA+D
Sbjct: 105 -ALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVG 163
Query: 1166 ----EQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGR 1205
E + L + +T I+V H+L + D I ++ +GR
Sbjct: 164 RHIFENCILGLL---LNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 146 bits (369), Expect = 1e-39
Identities = 79/224 (35%), Positives = 127/224 (56%), Gaps = 24/224 (10%)
Query: 353 GEIEFEHVKFSYPSRPD-SIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADD 411
GEIE E++ Y PD VLK+ + KVKAG+ + +VG +G+GKST I + RF +A++
Sbjct: 5 GEIEVENLSVRY--APDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 412 GIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNI-MFGKLDATMDEVIAAATAA 470
G + IDG+DI + L+ +R + ++ Q+ LF +I+ N+ F + DE I A
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYS---DEEIYGAL-- 117
Query: 471 NAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESET 530
+V E G LS GQ+Q + +ARA++K P +L+LDEAT+++D ++
Sbjct: 118 ---------------RVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162
Query: 531 LVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGT 574
L+Q + + T L +AH+L T+ + D I V+D G + E
Sbjct: 163 LIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 1e-39
Identities = 80/240 (33%), Positives = 120/240 (50%), Gaps = 28/240 (11%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
IE + S+ R VLK +L V+ G+ +A++G SGSGKST + L+ D G V
Sbjct: 1 IELRGLTKSFGGRT---VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 415 RIDGVDIRRL---QLKWVRREMGLVSQEHALFGT-SIKDNIMF-----GKLDATMDEVIA 465
IDG DI L +L +RR MG++ Q ALF + ++ +N+ F +L I
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117
Query: 466 AAT--AANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSA 523
A P A LSGG K+R+A+ARA+ +P +LL DE T+
Sbjct: 118 LEKLEAVGLRGAEDLYP-----------AELSGGMKKRVALARALALDPELLLYDEPTAG 166
Query: 524 LDSESETLVQNALD--QASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580
LD + ++ + + + LG T+++V H L T AD IAV+ +G +V GT +L
Sbjct: 167 LDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 2e-39
Identities = 72/224 (32%), Positives = 116/224 (51%), Gaps = 18/224 (8%)
Query: 355 IEFEHVKFSYPSRPDSI-VLKDFNLKVKAGKSVALVGASGSGKST---AIALVQRFYDAD 410
IE ++V Y + + LKD NL+++AG+ VA+VG SGSGKST + + +
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PT 58
Query: 411 DGIVRIDGVDIRRL---QLKWVRRE-MGLVSQEHALFGT-SIKDNIMFGKLDATMDEVIA 465
G V I+G D+ +L +L +RR+ +G V Q L ++ +N+ L + A
Sbjct: 59 SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVE---LPLLIAGKSA 115
Query: 466 AATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALD 525
A + L + + ++ + LSGGQ+QR+AIARA+I NP I+L DE T LD
Sbjct: 116 GRRKRAAEELLEVL-GLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLD 174
Query: 526 SESETLVQNALDQ--ASLGRTTLVVAHKLSTVRNADLIAVVDNG 567
S++ V L + G+T ++V H + AD + + +G
Sbjct: 175 SKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDG 218
|
Length = 226 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 3e-39
Identities = 75/219 (34%), Positives = 116/219 (52%), Gaps = 22/219 (10%)
Query: 355 IEFEHVKFSYPSRPDSI--VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDG 412
I E F++ S LKD NL+V G+ VA+VG GSGKS+ ++ + + G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 413 IVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGK-LDATM-DEVIAAATAA 470
V + G + VSQE + +I++NI+FGK D ++VI A
Sbjct: 61 SVSVPG-------------SIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVI---KAC 104
Query: 471 NAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSE-SE 529
+ LP+G T++GE+G LSGGQKQRI++ARA+ + I LLD+ SA+D+
Sbjct: 105 ALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGR 164
Query: 530 TLVQNALDQA-SLGRTTLVVAHKLSTVRNADLIAVVDNG 567
+ +N + +T ++V H+L + +AD I V+DNG
Sbjct: 165 HIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 158 bits (400), Expect = 7e-39
Identities = 94/227 (41%), Positives = 133/227 (58%), Gaps = 18/227 (7%)
Query: 377 NLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLV 436
N+ +K +L GSG+ + + + G + +DGVDI LK +R +V
Sbjct: 1249 NVGMKNVNEFSLTKEGGSGEDSTVF-------KNSGKILLDGVDICDYNLKDLRNLFSIV 1301
Query: 437 SQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSG 496
SQE LF SI +NI FGK DAT ++V A A FI LP Y+T VG G LSG
Sbjct: 1302 SQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSG 1361
Query: 497 GQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNAL----DQASLGRTTLVVAHKL 552
GQKQRIAIARA+++ P ILLLDEATS+LDS SE L++ + D+A +T + +AH++
Sbjct: 1362 GQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKAD--KTIITIAHRI 1419
Query: 553 STVRNADLIAVVDN----GCLVEI-GTHNDLINRIDGHYAKMAKLQR 594
++++ +D I V +N G V+ GTH +L++ DG Y K KL +
Sbjct: 1420 ASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLAK 1466
|
Length = 1466 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 142 bits (362), Expect = 1e-38
Identities = 73/222 (32%), Positives = 114/222 (51%), Gaps = 22/222 (9%)
Query: 356 EFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVR 415
E +++ FSYP L D +L +K G+ V +VG +GSGKST + L+ G V
Sbjct: 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 416 IDGVDIRRLQLKWVRREMGLVSQ--EHALFGTSIKDNIMFG----KLD-ATMDEVIAAAT 468
+DG D+ +L LK +RR++GLV Q + FG ++++ + FG L ++E + A
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 469 AA-NAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSE 527
+ P LSGGQKQR+AIA + +P ILLLDE T+ LD
Sbjct: 120 ELVGLEGLRDRSPF-----------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA 168
Query: 528 SETLVQNALDQ-ASLGRTTLVVAHKLSTVRN-ADLIAVVDNG 567
+ L + + G+T ++V H L + AD + V+++G
Sbjct: 169 GRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 2e-38
Identities = 72/233 (30%), Positives = 125/233 (53%), Gaps = 19/233 (8%)
Query: 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDG 412
+E +V S+ D + D +L +K G+ V L+G SG GK+T + ++ F G
Sbjct: 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 413 IVRIDGVDIRRLQLKWVRREMGLVSQEHALFGT-SIKDNIMFG-KLDATMDEVIAAATAA 470
+ +DG DI + + +R +G+V Q +ALF ++++N+ FG K+ + + A
Sbjct: 61 EILLDGEDITDVPPE--KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVE 118
Query: 471 NAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESET 530
A + EG+ + + LSGGQ+QR+A+ARA++ P +LLLDE SALD++
Sbjct: 119 EALELVG--LEGFADR---KPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLRE 173
Query: 531 LVQNALD--QASLGRTTLVVAHKLS---TVRNADLIAVVDNGCLVEIGTHNDL 578
++ L Q LG T + V H + +D IAV+++G + ++GT ++
Sbjct: 174 QMRKELKELQRELGITFVYVTHDQEEALAM--SDRIAVMNDGRIEQVGTPEEI 224
|
Length = 352 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 3e-38
Identities = 74/219 (33%), Positives = 108/219 (49%), Gaps = 48/219 (21%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+E ++V Y VL D +L ++AG+ VAL+G SGSGKST + + + D G +
Sbjct: 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 415 RIDGVDIRRL--QLKWVRREMGLVSQEHALF-GTSIKDNIMFGKLDATMDEVIAAATAAN 471
IDG D+ L +L +RR +G+V Q+ ALF ++ +NI G
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100
Query: 472 AHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETL 531
LSGGQ+QR+A+ARA+ +P +LLLDE TSALD +
Sbjct: 101 ----------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138
Query: 532 VQNALDQ--ASLGRTTLVVAHKLSTVRN-ADLIAVVDNG 567
V+ L A LG T ++V H L AD + V+ +G
Sbjct: 139 VRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 5e-38
Identities = 80/240 (33%), Positives = 122/240 (50%), Gaps = 23/240 (9%)
Query: 355 IEFEHVKFSYPSRPDSI-VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI 413
IE ++V + + LKD +L V G+ ++G SG+GKST I + G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 414 VRIDGVDIRRL---QLKWVRREMGLVSQEHALFGT-SIKDNIMFGKLDATMDEVIAAATA 469
V +DG D+ L +L+ RR +G++ Q L + ++ +N+ L+ IA
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVAL-PLE------IAGVPK 114
Query: 470 ANAHNFIRQLPE--GYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSE 527
A + +L E G E K A LSGGQKQR+ IARA+ NP +LL DEATSALD E
Sbjct: 115 AEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPE 174
Query: 528 SETLVQNALD-----QASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581
+ Q+ L LG T +++ H++ V+ D +AV++ G +VE GT ++
Sbjct: 175 T---TQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 5e-38
Identities = 73/236 (30%), Positives = 112/236 (47%), Gaps = 26/236 (11%)
Query: 355 IEFEHVKFSYPSRPDSI-VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI 413
+E +++ S+P+ S+ L D + +K G+++ LVG SGSGKST + G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 414 VRIDGVDI---RRLQLKWVRREMGLVSQE--HAL-FGTSIKDNIMFGKLDATMDEVIAAA 467
+ DG D+ R K R+E+ +V Q+ +L +I + I E +
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIA---------EPLRIH 112
Query: 468 TAANAHNFIRQLPEGYETKVGERGAL-------LSGGQKQRIAIARAIIKNPVILLLDEA 520
+ ++ VG + LSGGQ+QR+AIARA+ NP +L+ DE
Sbjct: 113 GKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEP 172
Query: 521 TSALDSESETLVQNALD--QASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIG 573
TSALD + + + L Q LG T L + H L V AD +AV+ G +VE G
Sbjct: 173 TSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 7e-38
Identities = 72/209 (34%), Positives = 111/209 (53%), Gaps = 11/209 (5%)
Query: 1006 DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW 1065
L S+ V+PG + L+G SGCGK+T++ LI + G + +DG DV +
Sbjct: 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE- 70
Query: 1066 YRKHTALVSQEPVIYAG-NIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETEC 1124
R++ +V Q+ ++ + +NI FG L V +A A E + + G E
Sbjct: 71 -RRNIGMVFQDYALFPHLTVAENIAFG-LKL--RGVPKAEIRARVRELLELV--GLEGLL 124
Query: 1125 GERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTT 1182
+LSGGQ+QR+A+ARA+ R P++LLLDE SALD + + ++E L + G TT
Sbjct: 125 NRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITT 184
Query: 1183 IVVAHRLNTIKKL-DSIALVADGRVVERG 1210
I V H L D IA++ +GR+V+ G
Sbjct: 185 IYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 8e-38
Identities = 76/238 (31%), Positives = 121/238 (50%), Gaps = 25/238 (10%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
IE +++ S+ D VLK +L V+ G+ V ++G SGSGKST + + + D G +
Sbjct: 3 IEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 415 RIDGVDI-RRLQLKWVRREMGLVSQEHALFG-TSIKDNIMFG-----KLDATMDEVIAAA 467
+DG D+ + + +RR++G+V Q+ LF ++ +N+ KL E A
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSK--AEAREKA 117
Query: 468 TAANAHNFIRQLPE--GYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALD 525
+L E G K A LSGGQ+QR+AIARA+ +P ++L DE TSALD
Sbjct: 118 ---------LELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALD 168
Query: 526 SESETLVQNALDQ-ASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581
E V + + A G T ++V H++ R AD + +D G ++E G + +
Sbjct: 169 PELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226
|
Length = 240 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 1e-37
Identities = 70/218 (32%), Positives = 105/218 (48%), Gaps = 48/218 (22%)
Query: 355 IEFEHVKFSYP--SRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDG 412
+E E+V F YP P VL++ + ++ G+S+A++G SGSGKST L+ G
Sbjct: 1 LEVENVSFRYPGAEPP---VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG 57
Query: 413 IVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANA 472
VR+DG DI + + +G + Q+ LF SI +NI
Sbjct: 58 RVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI--------------------- 96
Query: 473 HNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLV 532
LSGGQ+QR+ +ARA+ NP IL+LDE S LD E E +
Sbjct: 97 ---------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERAL 135
Query: 533 QNALDQASL-GRTTLVVAHKLSTVRNADLIAVVDNGCL 569
A+ G T +V+AH+ T+ +AD I V+++G +
Sbjct: 136 NQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 139 bits (354), Expect = 1e-37
Identities = 70/219 (31%), Positives = 110/219 (50%), Gaps = 14/219 (6%)
Query: 993 EMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVR 1052
E++ + F+YP L S+ +K G V +VG +G GKST++ L+ G V
Sbjct: 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 1053 VDGMDVRELDVHWYRKHTALVSQEP--VIYAGNIRDNIVFG--KLDASENEVVEAARAAN 1108
VDG D+ +L + R+ LV Q P + + + + FG L E E+ E A
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 1109 AHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQV 1168
+ L+D LSGGQ+QR+AIA + +P ILLLDE T+ LD +
Sbjct: 120 ELVGLEGLRD-RSPF------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE 172
Query: 1169 VQEALDRIM-MGRTTIVVAHRLNTIKKL-DSIALVADGR 1205
+ E L ++ G+T I+V H L+ + +L D + ++ DG+
Sbjct: 173 LLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 7e-37
Identities = 76/223 (34%), Positives = 121/223 (54%), Gaps = 14/223 (6%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+E + + +Y S L D +L V+ G+ +AL+G SG GK+T + L+ D G +
Sbjct: 1 LELKGLSKTYGSVR---ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALFGT-SIKDNIMFGKLDATMDEVIAAATAANAH 473
IDG D+ + + RR +G+V Q++ALF ++ +NI FG + + A A
Sbjct: 58 LIDGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPK---AEIRARVR 112
Query: 474 NFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQ 533
+ + G E + LSGGQ+QR+A+ARA+ + P +LLLDE SALD++ ++
Sbjct: 113 ELLELV--GLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELR 170
Query: 534 NALD--QASLGRTTLVVAHKLS-TVRNADLIAVVDNGCLVEIG 573
L Q LG TT+ V H + AD IAV++ G +V++G
Sbjct: 171 EELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 1e-36
Identities = 85/276 (30%), Positives = 136/276 (49%), Gaps = 27/276 (9%)
Query: 355 IEFEHVKFSYPSR--PDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDG 412
IE E+V ++ L D +L++ G+ ++G SG+GKST + L+ G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 413 IVRIDGVDIRRL---QLKWVRREMGLVSQEHALFGT-SIKDNIMFG-KLDATMDEVIAAA 467
V +DG D+ L +L+ +R+++G++ Q L + ++ +N+ F +L I
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 468 TAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSE 527
A + L + K A LSGGQKQR+AIARA+ NP ILL DEATSALD E
Sbjct: 122 VAELLE--LVGLSD----KADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPE 175
Query: 528 SETLVQNALD-----QASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581
+ Q+ L+ LG T +++ H++ V+ D +AV+D G LVE GT ++
Sbjct: 176 T---TQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSE---- 228
Query: 582 IDGHYAKMAKLQRQFSCDDQETIPETHVSSVTRSSG 617
+ + K A Q + +PE + + G
Sbjct: 229 VFAN-PKHAITQEFIGETLEIDLPEELLERLESGDG 263
|
Length = 339 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 3e-36
Identities = 80/272 (29%), Positives = 129/272 (47%), Gaps = 4/272 (1%)
Query: 665 LIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLL 724
LI L I G+ + L +G + + + E S I L+ L L
Sbjct: 2 LIAILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGL-LLQG 60
Query: 725 QHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADR 784
Y +G R+ KR+ +L +IL ++FD NS G L SRL+N+ S ++ + D+
Sbjct: 61 SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDT--NSVGELTSRLTNDVSKIRDGLGDK 118
Query: 785 VSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNR 844
+ L Q+ + V I+ WKL +V++A+ PL IL L ++ KA +
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAK 178
Query: 845 STQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMS 904
+ +A E++ R V +FG L+ +D+A E+ K KK+ AG+ G Q ++++S
Sbjct: 179 AGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLS 238
Query: 905 WALDFWYGGTLVQKGQISAGDVFKTFFILVST 936
+AL W+G LV G +S G VF F L
Sbjct: 239 YALALWFGAYLVISGGLSVGTVF-AFLSLGLQ 269
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 3e-36
Identities = 71/226 (31%), Positives = 105/226 (46%), Gaps = 23/226 (10%)
Query: 355 IEFEHVKFSYPSRPDSI-VLKDFNLKVKAGKSVALVGASGSGKST---AIALVQRFYDAD 410
IE +++ +Y + + LK +L ++ G+ VA+VG SGSGKST + + R
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PT 57
Query: 411 DGIVRIDGVDIRRL----QLKWVRREMGLVSQEHALFGT-SIKDNIMFGKLDATMDEVIA 465
G VR+DG DI +L + RR +G V Q L + +N+ + V
Sbjct: 58 SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELP---LLLAGVPK 114
Query: 466 AATAANAHNFIRQ--LPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSA 523
A + + L + E LSGGQ+QR+AIARA+ +P I+L DE T
Sbjct: 115 KERRERAEELLERVGLGDRLNHYPSE----LSGGQQQRVAIARALANDPKIILADEPTGN 170
Query: 524 LDSESETLVQNALDQ--ASLGRTTLVVAHKLSTVRNADLIAVVDNG 567
LDSE+ V L + G T +VV H AD I + +G
Sbjct: 171 LDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 7e-36
Identities = 73/239 (30%), Positives = 126/239 (52%), Gaps = 8/239 (3%)
Query: 76 SLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQ-DATTTSE 134
SL + + + V+ L+G + ER +IR + A+LRQ +G S D + E
Sbjct: 42 SLAILLIAVGVLQGLLLQGSFY--LGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGE 99
Query: 135 VINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLIIPGM 194
+ + ++ D S I++ L +K+ +F + + + G Y+ W+L+LV L LLI+
Sbjct: 100 LTSRLTNDVSKIRDGLGDKLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSA 159
Query: 195 IYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLGIK 254
+ K L L++K K Y KA ++ E++LS I+TV +F E ++RY+ L+ K GIK
Sbjct: 160 VLAKKLRKLNRKEQKAYAKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIK 219
Query: 255 QGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSAL 312
+ GL+ G T +S+ +A W+G++LV+ G + G + +F+ GL L L
Sbjct: 220 KAITAGLSFGITQLISYLSYALALWFGAYLVISGGLSVGTV----FAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 2e-35
Identities = 76/233 (32%), Positives = 121/233 (51%), Gaps = 14/233 (6%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
IEFE+V Y ++ + D NL ++ G+ + L+G SGSGK+T + ++ R + G +
Sbjct: 2 IEFENVSKRYGNK---KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALF-GTSIKDNIMF-GKLDATMDEVIAAATAANA 472
IDG DI L +RR++G V Q+ LF ++ +NI KL E I
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELL 118
Query: 473 HNFIRQLPEGYETKVGER-GALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETL 531
L + +R LSGGQ+QR+ +ARA+ +P ILL+DE ALD +
Sbjct: 119 DLV--GLDPS---EYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQ 173
Query: 532 VQNALD--QASLGRTTLVVAHKLS-TVRNADLIAVVDNGCLVEIGTHNDLINR 581
+Q + Q LG+T + V H + ++ AD IAV+D G +V+ T ++++
Sbjct: 174 LQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226
|
Length = 309 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 3e-35
Identities = 69/201 (34%), Positives = 97/201 (48%), Gaps = 16/201 (7%)
Query: 992 IEMRRVDFAYPSRPDAL-VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
+E+R V Y A+ L S+ V+ G V LVG SGCGKST++ +I G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 1051 VRVDGMDVRELDVHWYRKHTALVSQEPVIYA-GNIRDNIVFGKLDASENEVVEAARAANA 1109
V VDG V V Q+ + + DN+ G L+ V +A A
Sbjct: 61 VLVDGEPVTGP-----GPDRGYVFQQDALLPWLTVLDNVALG-LEL--QGVPKAEARERA 112
Query: 1110 HEFISSLK-DGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQV 1168
E + + G+E QLSGG RQR+A+ARA+ +P +LLLDE SALD + +
Sbjct: 113 EELLELVGLSGFE---NAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQ 169
Query: 1169 VQEALDRIM--MGRTTIVVAH 1187
+QE L I G+T ++V H
Sbjct: 170 LQEELLDIWRETGKTVLLVTH 190
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 6e-35
Identities = 57/219 (26%), Positives = 111/219 (50%), Gaps = 41/219 (18%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
+ + V F+YP + + VL+ S+E+K G + L+G+SG GKST++ L+ +QG +
Sbjct: 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHE 1111
+DG+ V +L+ ++++Q P ++ +R+N+
Sbjct: 60 TLDGVPVSDLEKA-LSSLISVLNQRPYLFDTTLRNNL----------------------- 95
Query: 1112 FISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQE 1171
G + SGG+RQR+A+AR ++++ I+LLDE T LD +E+ +
Sbjct: 96 ----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139
Query: 1172 ALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERG 1210
+ ++ +T I + H L I+ +D I + +G+++ +G
Sbjct: 140 LIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 6e-35
Identities = 76/241 (31%), Positives = 121/241 (50%), Gaps = 25/241 (10%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
IE E++ F YP LKD +L+++ G+ V L+G +GSGKST + L+ G V
Sbjct: 4 IEAENLSFRYP--GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 415 RIDGVDIRRLQLKW-VRREMGLVSQ--EHALFGTSIKDNIMFGKL-----DATMDEVIA- 465
+DG+D + +R+++GLV Q + LFG +++D + FG ++E +A
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE 121
Query: 466 AATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALD 525
A + + P LSGGQKQR+AIA + P ILLLDE T+ LD
Sbjct: 122 ALELVGLEELLDRPP-----------FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLD 170
Query: 526 SESETLVQNALD--QASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRI 582
+ + L + G+T ++V H L V AD + V+D+G ++ G ++ N
Sbjct: 171 PKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
Query: 583 D 583
+
Sbjct: 231 E 231
|
Length = 235 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 8e-35
Identities = 74/238 (31%), Positives = 120/238 (50%), Gaps = 26/238 (10%)
Query: 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI 413
E+E ++V+ S+ S VLKD NL ++ G+ V L+G SG GKST + ++ + G
Sbjct: 3 ELELKNVRKSFGSFE---VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59
Query: 414 VRIDGVDIRRLQLKWVRREMGLVSQEHALFGT-SIKDNIMFG-KLDATMDEVIAAATAA- 470
+ IDG D+ L + +R + +V Q +AL+ ++ +NI FG KL I
Sbjct: 60 ILIDGRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEV 117
Query: 471 ----NAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALD- 525
+ + + P LSGGQ+QR+A+ARA+++ P + LLDE S LD
Sbjct: 118 AKLLGLEHLLNRKP-----------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDA 166
Query: 526 -SESETLVQNALDQASLGRTTLVVAH-KLSTVRNADLIAVVDNGCLVEIGTHNDLINR 581
+ LG TT+ V H ++ + AD I V+++G + ++GT +L R
Sbjct: 167 KLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224
|
Length = 338 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 8e-35
Identities = 71/240 (29%), Positives = 120/240 (50%), Gaps = 26/240 (10%)
Query: 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVE--- 1047
IE+R ++ Y D L+ ++++ L+G SGCGKST++ + R D+
Sbjct: 7 AIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGA 63
Query: 1048 --QGSVRVDGMDVRE--LDVHWYRKHTALVSQEPVIYAGNIRDNIVFG-----KLDASEN 1098
+G V +DG ++ + +DV R+ +V Q+P + +I DN+ +G D +
Sbjct: 64 RVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELD 123
Query: 1099 EVVEAA--RAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDE 1156
E+VE++ +AA E L + LSGGQ+QR+ IARA+ P +LL+DE
Sbjct: 124 EIVESSLKKAALWDEVKDRLHKS--------ALGLSGGQQQRLCIARALAVKPEVLLMDE 175
Query: 1157 ATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
TSALD S ++E + + T ++V H + ++ D A G +VE G ++
Sbjct: 176 PTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235
|
Length = 253 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 1e-34
Identities = 59/219 (26%), Positives = 110/219 (50%), Gaps = 41/219 (18%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+ +V FSYP + + VLK+ +L++K G+ +AL+G SGSGKST + L+ G +
Sbjct: 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHN 474
+DGV + L+ K + + +++Q LF T++++N+
Sbjct: 60 TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL----------------------- 95
Query: 475 FIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQN 534
G SGG++QR+A+AR ++++ I+LLDE T LD +E + +
Sbjct: 96 ----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139
Query: 535 ALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIG 573
+ + +T + + H L+ + + D I ++NG ++ G
Sbjct: 140 LIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 1e-34
Identities = 63/245 (25%), Positives = 115/245 (46%), Gaps = 30/245 (12%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
IE ++ Y D L + +V+ G+ L+G +G+GK+T + ++ G +
Sbjct: 5 IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALFGT-SIKDNIMF---------GKLDATMDEVI 464
+ G D+ + + VRR +G V QE +L+ ++++N+ F + + ++E++
Sbjct: 63 LVLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELL 121
Query: 465 AAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSAL 524
L + KV LSGG KQR++IA A++ +P +L+LDE TS L
Sbjct: 122 ELF----------GLEDKANKKVRT----LSGGMKQRLSIALALLHDPELLILDEPTSGL 167
Query: 525 DSESETLVQNALDQ--ASLGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIGTHNDLINR 581
D ES + L + G T L+ H L D + ++++G ++ GT +L +
Sbjct: 168 DPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227
Query: 582 IDGHY 586
G
Sbjct: 228 FGGKG 232
|
Length = 293 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 2e-34
Identities = 67/240 (27%), Positives = 111/240 (46%), Gaps = 28/240 (11%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+E E++ F Y +P +L D + + G+ ++G +GSGKST + + G V
Sbjct: 3 LEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEH-ALFGTSIKDNIMFGKL----------DATMDEV 463
+DG DI L K + +++ V Q A FG ++ + ++ G+ + V
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 464 IAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSA 523
A + + V E LSGG++QR+ IARA+ + ILLLDE TS
Sbjct: 120 EEALELLGLEHLADRP-------VDE----LSGGERQRVLIARALAQETPILLLDEPTSH 168
Query: 524 LDSESETLVQNALDQ--ASLGRTTLVVAHKLS-TVRNADLIAVVDNGCLVEIGTHNDLIN 580
LD + V L G T ++V H L+ R AD + ++ +G +V GT +++
Sbjct: 169 LDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228
|
Length = 258 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 2e-34
Identities = 81/241 (33%), Positives = 129/241 (53%), Gaps = 29/241 (12%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
IE V S+ R ++L +L V G+ +A++G SGSGKST + L+ D G +
Sbjct: 9 IEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 415 RIDGVDIRRL---QLKWVRREMGLVSQEHALFGT-SIKDNIMFGKLDAT-MDEVIAAATA 469
IDG DI +L +L +R+ MG++ Q+ ALF + ++ +N+ F + T + E
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPE------- 118
Query: 470 ANAHNFIRQLPEGYETKVGERGAL-------LSGGQKQRIAIARAIIKNPVILLLDEATS 522
+ IR+L VG RGA LSGG ++R+A+ARAI +P +L LDE TS
Sbjct: 119 ----SLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTS 174
Query: 523 ALDSESETLVQNALD--QASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLI 579
LD S ++ + +LG T ++V H L ++ AD +AV+ +G ++ GT +L+
Sbjct: 175 GLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELL 234
Query: 580 N 580
Sbjct: 235 A 235
|
Length = 263 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 3e-34
Identities = 67/215 (31%), Positives = 103/215 (47%), Gaps = 17/215 (7%)
Query: 355 IEFEHVKFSYPSRPDSI-VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI 413
+E +V +Y ++ L+D +L V+ G+ VALVG SG GKST + ++ G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 414 VRIDGVDIRRLQLKWVRREMGLVSQEHALFG-TSIKDNIMFGKLDATMDEVIAAATAANA 472
V +DG + + G V Q+ AL ++ DN+ G + V A A
Sbjct: 61 VLVDGEPVTG-----PGPDRGYVFQQDALLPWLTVLDNVALG---LELQGVPKAEARERA 112
Query: 473 HNFIRQLP-EGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETL 531
+ + G+E LSGG +QR+A+ARA+ +P +LLLDE SALD+ +
Sbjct: 113 EELLELVGLSGFENA---YPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQ 169
Query: 532 VQNALDQ--ASLGRTTLVVAHKLS-TVRNADLIAV 563
+Q L G+T L+V H + V AD + V
Sbjct: 170 LQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVV 204
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 3e-34
Identities = 77/240 (32%), Positives = 125/240 (52%), Gaps = 27/240 (11%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
IEFE+V Y + + NL++ G+ + L+G SGSGK+T + ++ R + G +
Sbjct: 1 IEFENVTKRYGGGKK--AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALF-GTSIKDNIMF---------GKLDATMDEVI 464
IDG DIR +RR++G V Q+ LF ++++NI K+ DE++
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELL 118
Query: 465 AAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSAL 524
A A F + P +E LSGGQ+QR+ +ARA+ +P +LL+DE AL
Sbjct: 119 ALVGLDPAE-FADRYP--HE---------LSGGQQQRVGVARALAADPPLLLMDEPFGAL 166
Query: 525 DSESETLVQNALD--QASLGRTTLVVAHKL-STVRNADLIAVVDNGCLVEIGTHNDLINR 581
D + +Q Q LG+T + V H + R AD IA++ NG +V++GT ++++
Sbjct: 167 DPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 4e-34
Identities = 76/224 (33%), Positives = 125/224 (55%), Gaps = 16/224 (7%)
Query: 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
+IE + V + S +L+ S++ + G +VG SG GKST+I LI R D +GS
Sbjct: 3 EIEFKEVSY---SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGS 59
Query: 1051 VRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAH 1110
+ +DG+D++ +DV R+ +V Q+P ++ G ++DNI +G + E V +
Sbjct: 60 ILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNV-------DVE 112
Query: 1111 EFISSLKDGYETECGERGVQ-LSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVV 1169
++S + G E R V+ LSGG+ QR++IAR + NP +LLLDE TSALD S +++
Sbjct: 113 YYLSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEII 170
Query: 1170 QEALDRIM--MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERG 1210
+E + ++ M T I + H + K++ D A + G +VE
Sbjct: 171 EELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYA 214
|
Length = 241 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 4e-34
Identities = 77/228 (33%), Positives = 115/228 (50%), Gaps = 32/228 (14%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
IE +++ S+ VLK +L VK G+ V ++G SGSGKST + + + D G +
Sbjct: 1 IEIKNLHKSFGDFH---VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57
Query: 415 RIDGVDI--RRLQLKWVRREMGLVSQEHALFG-TSIKDNIMFG-----KLDATMDEVIAA 466
IDG+ + + + +R+++G+V Q+ LF ++ +NI + E
Sbjct: 58 IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSK--AEAEER 115
Query: 467 ATAANAHNFIRQLPE--GYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSAL 524
A +L E G K A LSGGQ+QR+AIARA+ NP ++L DE TSAL
Sbjct: 116 A---------LELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSAL 166
Query: 525 DSESETLVQNALDQ----ASLGRTTLVVAHKLSTVRN-ADLIAVVDNG 567
D E LV LD A G T +VV H++ R AD + +D+G
Sbjct: 167 DPE---LVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDG 211
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 5e-34
Identities = 77/285 (27%), Positives = 124/285 (43%), Gaps = 38/285 (13%)
Query: 332 IDRVPEIDGED-TKGLVLDEVRGE--IEFEHVKFSYPSRPDSIV--------LKDFNLKV 380
+ VP + E + +R E + ++ Y SR V + D + +
Sbjct: 255 LAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDL 314
Query: 381 KAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDG--VDIRRLQLKWVRREMGLVSQ 438
+ G+++ LVG SGSGKST ++ G + DG +D+ +L+ +RR + +V Q
Sbjct: 315 REGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQ 374
Query: 439 E-------HALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERG 491
+ G + + + + + A A + LP + +
Sbjct: 375 DPYSSLNPRMTVGDILAEPLRIHGGGSGAE---RRARVAELLELVG-LPPEFLDR---YP 427
Query: 492 ALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNA-----LD-QASLGRTT 545
LSGGQ+QR+AIARA+ P +L+LDE SALD VQ D Q LG T
Sbjct: 428 HELSGGQRQRVAIARALALEPKLLILDEPVSALD----VSVQAQVLNLLKDLQEELGLTY 483
Query: 546 LVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRIDGHYAKM 589
L ++H L+ VR AD +AV+ +G +VE G + Y +
Sbjct: 484 LFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRK 528
|
Length = 539 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 6e-34
Identities = 66/212 (31%), Positives = 110/212 (51%), Gaps = 12/212 (5%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK 1068
L S EV+PG GL+G +G GK+T++ ++ G + V G DV + + R+
Sbjct: 20 ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVK-EPAKVRR 78
Query: 1069 HTALVSQEPVIYAG-NIRDNIVF-GKLDASENEVVEAARAANAHEFISSLKDGYETECGE 1126
V QEP +Y +R+N+ F +L E E F G E + +
Sbjct: 79 RIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELF------GLEDKANK 132
Query: 1127 RGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRI-MMGRTTIVV 1185
+ LSGG +QR++IA A++ +P +L+LDE TS LD +S + + E L + G TI++
Sbjct: 133 KVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILL 192
Query: 1186 A-HRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
+ H L ++L D + ++ DG+++ GT +L
Sbjct: 193 STHILEEAEELCDRVIILNDGKIIAEGTPEEL 224
|
Length = 293 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 7e-34
Identities = 76/248 (30%), Positives = 122/248 (49%), Gaps = 40/248 (16%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
IE E++ +YP+ LKD +L + G+ VAL+G SG+GKST + + + G V
Sbjct: 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
Query: 415 RIDGVDIRRLQ---LKWVRREMGLVSQEHALFG-TSIKDNIMFGKLDATMDEVIAAATAA 470
IDG DI +L+ L+ +RR++G++ Q+ L S+ +N++ G+L
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRL-------------- 104
Query: 471 NAHNFIRQLPE-----------------GYETKVGERGALLSGGQKQRIAIARAIIKNPV 513
+ R L G K +R LSGGQ+QR+AIARA+++ P
Sbjct: 105 GRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPK 164
Query: 514 ILLLDEATSALDSESETLVQNALDQA--SLGRTTLVVAHKLSTVR-NADLIAVVDNGCLV 570
++L DE ++LD S V + L + G T +V H++ R AD I + +G +V
Sbjct: 165 LILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224
Query: 571 EIGTHNDL 578
G +L
Sbjct: 225 FDGPPAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 9e-34
Identities = 70/235 (29%), Positives = 107/235 (45%), Gaps = 30/235 (12%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
+E+ + F Y +P +L S + G G++G +G GKST++ + + G V
Sbjct: 3 LEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIYAG-NIRDNIVFGKL----------DASENEV 1100
+DG D+ L K A V Q P G + + ++ G+ E V
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 1101 VEAARAANAHEFISSLKDGYETECGERGV-QLSGGQRQRIAIARAIIRNPTILLLDEATS 1159
EA +R V +LSGG+RQR+ IARA+ + ILLLDE TS
Sbjct: 120 EEALELLGLEHLA------------DRPVDELSGGERQRVLIARALAQETPILLLDEPTS 167
Query: 1160 ALDVQSEQVVQEALDRIMM--GRTTIVVAHRLN-TIKKLDSIALVADGRVVERGT 1211
LD+ + V E L + G T ++V H LN + D + L+ DG++V +GT
Sbjct: 168 HLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGT 222
|
Length = 258 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 9e-34
Identities = 75/241 (31%), Positives = 118/241 (48%), Gaps = 23/241 (9%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI- 413
IE E++ Y + LK+ NL + + AL+G SG GKST + + R D G+
Sbjct: 2 IEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 414 ----VRIDGVDI--RRLQLKWVRREMGLVSQEHALFGTSIKDNIMFG------KLDATMD 461
V DG DI +++ + +RR +G+V Q+ F SI DNI +G K +D
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELD 118
Query: 462 EVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEAT 521
E++ + A L + + ++ + LSGGQ+QR+ IARA+ P +LLLDE T
Sbjct: 119 EIVEESLKKAA------LWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPT 172
Query: 522 SALDSESETLVQNALDQASLGRTTLVVAHKLS-TVRNADLIAVVDNGCLVEIGTHNDLIN 580
SALD + ++ + + T ++V H + R +D A +G LVE G +
Sbjct: 173 SALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232
Query: 581 R 581
Sbjct: 233 N 233
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 2e-33
Identities = 82/240 (34%), Positives = 135/240 (56%), Gaps = 12/240 (5%)
Query: 989 SGKIEMRRVDFAYPSRPD-ALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVE 1047
SG I+ V Y RP+ VL S E+ P VG+VG++G GKS+++ + R ++E
Sbjct: 1235 SGSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE 1292
Query: 1048 QGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDA----SENEVVEA 1103
+G + +DG D+ + + RK ++ Q PV+++G +R N LD ++ ++ E+
Sbjct: 1293 RGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFN-----LDPFNEHNDADLWES 1347
Query: 1104 ARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDV 1163
A+ + I G + E E G S GQRQ +++ARA++R IL+LDEAT+A+DV
Sbjct: 1348 LERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDV 1407
Query: 1164 QSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFF 1223
+++ ++Q+ + T +++AHRLNTI D I ++ GRVVE T L G+ F
Sbjct: 1408 RTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAF 1467
|
Length = 1622 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 4e-33
Identities = 62/220 (28%), Positives = 104/220 (47%), Gaps = 48/220 (21%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
+E++ V Y VL S+ ++ G V L+G SG GKST++ I + + GS+
Sbjct: 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 1052 RVDGMDVRELDVHW--YRKHTALVSQEPVIYAG-NIRDNIVFGKLDASENEVVEAARAAN 1108
+DG D+ +L+ R+ +V Q+ ++ + +NI G
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100
Query: 1109 AHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQV 1168
LSGGQ+QR+A+ARA+ +P +LLLDE TSALD + +
Sbjct: 101 ----------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138
Query: 1169 VQEALDRI--MMGRTTIVVAHRLNTIKKL-DSIALVADGR 1205
V+ L + +G T ++V H L+ +L D + ++ DG+
Sbjct: 139 VRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 5e-33
Identities = 79/232 (34%), Positives = 120/232 (51%), Gaps = 20/232 (8%)
Query: 992 IEMRRVDFAYPSRPDALV--LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQG 1049
IE+ V + V L S+E+ G G++G SG GKST++ LI G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 1050 SVRVDGMDVRELD---VHWYRKHTALVSQEP-VIYAGNIRDNIVFG-KLDASENEVVEAA 1104
SV VDG D+ L + R+ ++ Q ++ + + +N+ F +L ++
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQ- 120
Query: 1105 RAANAHEF--ISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALD 1162
R A E +S D Y QLSGGQ+QR+AIARA+ NP ILL DEATSALD
Sbjct: 121 RVAELLELVGLSDKADRYP-------AQLSGGQKQRVAIARALANNPKILLCDEATSALD 173
Query: 1163 VQSEQVVQEALDRI--MMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGT 1211
++ Q + E L I +G T +++ H + +K++ D +A++ GR+VE GT
Sbjct: 174 PETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGT 225
|
Length = 339 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 5e-33
Identities = 87/259 (33%), Positives = 140/259 (54%), Gaps = 8/259 (3%)
Query: 335 VPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPS--RPDSIVLKDFNLKVKAGKSVALVGAS 392
+ I G GLV + GEI+ + Y + +P VLK +K G+ V + G +
Sbjct: 2 IASISGSSNSGLV--GLGGEIKIHDLCVRYENNLKP---VLKHVKAYIKPGQKVGICGRT 56
Query: 393 GSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIM 452
GSGKS+ R D DG + IDG+DI +L L +R + ++ Q+ LF SI+ N +
Sbjct: 57 GSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFN-L 115
Query: 453 FGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNP 512
+ T D + A A N ++ LP G + V E G S GQ+Q +ARA ++
Sbjct: 116 DPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175
Query: 513 VILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEI 572
IL++DEAT+++D +E ++Q + A RT + +AH++ST+ +ADL+ V+ G LVE
Sbjct: 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVEC 235
Query: 573 GTHNDLINRIDGHYAKMAK 591
T +L+ + DG +A + +
Sbjct: 236 DTPENLLAQEDGVFASLVR 254
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 6e-33
Identities = 128/508 (25%), Positives = 235/508 (46%), Gaps = 63/508 (12%)
Query: 113 LEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFST 172
L LR + FF+ T + ++N SK+ + ++ + +F+ G F+
Sbjct: 1045 LHNKLRSPMSFFER---TPSGNLVNRFSKELDTVDSMIPPVIKMFM--------GSLFNV 1093
Query: 173 YFSWRLSLVAFPTLLLLIIP-GMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSF 231
+ + L+A P ++I P G++Y + ++ Y + +E S VYS
Sbjct: 1094 IGALIVILLATPIAAVIIPPLGLLY-----FFVQRFYVASSRQLKRLESV--SRSPVYSH 1146
Query: 232 SAER----RIIDRYEA----ILDSTTKLGIKQGTAKGLAVGSTGLSFAIWAFLAWYGSHL 283
E +I +E I S K+ Q V + L+ L G+ +
Sbjct: 1147 FNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVR----LECVGNCI 1202
Query: 284 VMFKGETGGKIYAAGISFILSGLSLGSALPELKYFT---------EASIAASRIFDRIDR 334
V+F I +S L GLS+ +L Y E +I A ++R
Sbjct: 1203 VLFAA-LFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVA------VER 1255
Query: 335 VPEIDGEDTKG-LVLDEVR--------GEIEFEHVKFSYPSRPD-SIVLKDFNLKVKAGK 384
+ E + + + E G +EF + Y R D +VL+ N+ + G+
Sbjct: 1256 LKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRY--REDLDLVLRHINVTIHGGE 1313
Query: 385 SVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFG 444
V +VG +G+GKS+ + R ++ +G + IDG++I ++ L +R ++ ++ Q+ LF
Sbjct: 1314 KVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFS 1373
Query: 445 TSIKDNI-MFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIA 503
S++ N+ F + + +EV A A+ F+ LP+ + + E G LS GQ+Q +
Sbjct: 1374 GSLRMNLDPFSQY--SDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVC 1431
Query: 504 IARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAV 563
+ARA+++ IL+LDEAT+A+D E++ L+Q+ + T L +AH+L+T+ + + V
Sbjct: 1432 LARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIV 1491
Query: 564 VDNGCLVEIGTHNDLINRIDGHYAKMAK 591
+D G + E G ++L+ + G + MAK
Sbjct: 1492 LDKGEVAEFGAPSNLLQQ-RGIFYSMAK 1518
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 6e-33
Identities = 77/233 (33%), Positives = 118/233 (50%), Gaps = 18/233 (7%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
IE E+V Y + L +L +K G+ L+G SG GK+T + L+ F G +
Sbjct: 1 IELENVSKFYG---GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALF-GTSIKDNIMFGKLDATMDEVIAAATAANAH 473
+DG DI L +R + V Q +ALF ++ +NI FG + + A A
Sbjct: 58 LLDGKDI--TNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115
Query: 474 NFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQ 533
+ ++ EGY + + + LSGGQ+QR+AIARA++ P +LLLDE ALD + +Q
Sbjct: 116 DLVQL--EGYANR---KPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQ 170
Query: 534 NALD--QASLGRTTLVVAHKLS---TVRNADLIAVVDNGCLVEIGTHNDLINR 581
L Q LG T + V H T+ +D IAV++ G + +IGT ++
Sbjct: 171 LELKRLQKELGITFVFVTHDQEEALTM--SDRIAVMNKGKIQQIGTPEEIYEE 221
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 7e-33
Identities = 72/236 (30%), Positives = 115/236 (48%), Gaps = 26/236 (11%)
Query: 992 IEMRRVDFAYPSRPDAL-VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
+E++ + ++P+ ++ L S +K G ++GLVG+SG GKST+ I GS
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 1051 VRVDGMDVRELDVHW---YRKHTALVSQEPVIYAG-----NIRDNI-----VFGKLDASE 1097
+ DG D+ +L RK +V Q+P + I + I + GKL E
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDP--MSSLNPRMTIGEQIAEPLRIHGKLSKKE 119
Query: 1098 NEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEA 1157
A L + +LSGGQRQR+AIARA+ NP +L+ DE
Sbjct: 120 ----ARKEAVLLLLVGVGLPEEVLNR---YPHELSGGQRQRVAIARALALNPKLLIADEP 172
Query: 1158 TSALDVQSEQVVQEALDRI--MMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERG 1210
TSALDV + + + L ++ +G T + + H L + K+ D +A++ G++VE G
Sbjct: 173 TSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 1e-32
Identities = 72/235 (30%), Positives = 118/235 (50%), Gaps = 19/235 (8%)
Query: 992 IEMRRVDFAYPSRPDAL-VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
IE++ V + + L+ S+ V G G++G+SG GKST+I I GS
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 1051 VRVDGMDVREL---DVHWYRKHTALVSQE-PVIYAGNIRDNIVFG-KLDASENEVVEAAR 1105
V VDG D+ L ++ R+ ++ Q ++ + + +N+ ++ +E R
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIE-ER 120
Query: 1106 AANAHEFI--SSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDV 1163
E + D Y QLSGGQ+QR+ IARA+ NP +LL DEATSALD
Sbjct: 121 VLELLELVGLEDKADAYPA-------QLSGGQKQRVGIARALANNPKVLLCDEATSALDP 173
Query: 1164 QSEQVVQEALDRI--MMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
++ Q + L I +G T +++ H + +K++ D +A++ G VVE GT ++
Sbjct: 174 ETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 1e-32
Identities = 72/234 (30%), Positives = 123/234 (52%), Gaps = 26/234 (11%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
+E++ V ++ S VL+ +++++ G V L+G SGCGKST++ +I + G +
Sbjct: 4 LELKNVRKSFGSFE---VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIY-AGNIRDNIVFG----KLDASENE--VVEAA 1104
+DG DV +L ++ A+V Q +Y + +NI FG + +E + V E A
Sbjct: 61 LIDGRDVTDLPP--EKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA 118
Query: 1105 RAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQ 1164
+ ++ + +QLSGGQRQR+A+ARA++R P + LLDE S LD +
Sbjct: 119 KLLGLEHLLNR-----------KPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167
Query: 1165 SEQVVQEALDRI--MMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
+++ + ++ +G TTI V H L D I ++ DGR+ + GT +L
Sbjct: 168 LRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL 221
|
Length = 338 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 1e-32
Identities = 71/223 (31%), Positives = 103/223 (46%), Gaps = 29/223 (13%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+E E V S+ VL+D NL V+ G+ VA++G SG GKST + L+ G V
Sbjct: 4 LEIEGVSKSFGGVE---VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALFG-TSIKDNIMFGKLDATMDEVIAAATAANAH 473
+DG + ++G V QE AL ++ DN+ G L+ A A
Sbjct: 61 LLDGRPVTG-----PGPDIGYVFQEDALLPWLTVLDNVALG-LELRG--KSKAEARERAK 112
Query: 474 NFIRQLPEGYETKVGERGAL------LSGGQKQRIAIARAIIKNPVILLLDEATSALDSE 527
+ VG G LSGG +QR+AIARA+ P +LLLDE ALD+
Sbjct: 113 ELLE--------LVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDAL 164
Query: 528 SETLVQNALDQ--ASLGRTTLVVAHKLS-TVRNADLIAVVDNG 567
+ +Q+ L + +T L+V H + V AD + V+ N
Sbjct: 165 TREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 2e-32
Identities = 71/249 (28%), Positives = 120/249 (48%), Gaps = 28/249 (11%)
Query: 355 IEFEHVKFSYPSRPDSI-VLKDFNLKVKAGKSVALVGASGSGKST---AIALVQRFYDAD 410
+ ++ Y + L + +L+++ G+++ +VG SGSGKST +A +++
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP---S 60
Query: 411 DGIVRIDGVDIRRLQ-LKWVRREMGLVSQE-----HALF--GTSIKDNIMFGKLDATMDE 462
G + +DG + + K R + +V Q+ + G + + + L +
Sbjct: 61 SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQR 120
Query: 463 VIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATS 522
+ LP + + R LSGGQ+QRIAIARA+I P +L+LDE TS
Sbjct: 121 IAELLDQVG-------LPPSFLDR---RPHELSGGQRQRIAIARALIPEPKLLILDEPTS 170
Query: 523 ALDSESETLVQNALD--QASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLI 579
ALD + + N L + G T L ++H L+ V + D IAV+DNG +VEIG +L+
Sbjct: 171 ALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230
Query: 580 NRIDGHYAK 588
+ Y +
Sbjct: 231 SHPSHPYTR 239
|
Length = 252 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 3e-32
Identities = 140/513 (27%), Positives = 242/513 (47%), Gaps = 71/513 (13%)
Query: 113 LEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFST 172
L ++LR + FF +IN +KD I ++ V +F+ +S
Sbjct: 993 LGSILRAPMSFFH---TNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIG 1049
Query: 173 YFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVE--------QALSS 224
S +SL A LL+L YG YL Y S +E + ++I +AL+
Sbjct: 1050 IVS-TISLWAIMPLLVLF-----YGAYLYYQSTA--REVKRLDSITRSPVYAQFGEALNG 1101
Query: 225 IKTVYSFSAERRIID----------RYEAILDSTTK-LGIKQGTAKGLAVGSTGLSFAIW 273
+ T+ ++ A R+ + R+ + S+ + L I+ T GL + T SFA
Sbjct: 1102 LSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTA-SFA-- 1158
Query: 274 AFLAWYGSHLVMFKGETGGKIYAAG-----ISFILSGLSLGSALPELKYFTEASIAASRI 328
VM G + A +S+ L+ SL +A+ L E S
Sbjct: 1159 ----------VMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENS------ 1202
Query: 329 FDRIDRVPE-IDGEDTKGLVLDEVR--------GEIEFEHVKFSYPSRPD-SIVLKDFNL 378
+ ++RV ID LV++ R G I+FE V Y RP+ VL +
Sbjct: 1203 LNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRY--RPELPPVLHGLSF 1260
Query: 379 KVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQ 438
++ + V +VG +G+GKS+ + + R + + G + IDG DI + L +R+ +G++ Q
Sbjct: 1261 EISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQ 1320
Query: 439 EHALFGTSIKDNI-MFGKL-DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSG 496
LF +++ N+ F + DA + E + A+ + IR+ G + +V E G S
Sbjct: 1321 APVLFSGTVRFNLDPFNEHNDADLWE---SLERAHLKDVIRRNSLGLDAEVSEAGENFSV 1377
Query: 497 GQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVR 556
GQ+Q +++ARA+++ IL+LDEAT+A+D ++ L+Q + + T L++AH+L+T+
Sbjct: 1378 GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII 1437
Query: 557 NADLIAVVDNGCLVEIGTHNDLINRIDGHYAKM 589
+ D I V+D G +VE T +L++ ++KM
Sbjct: 1438 DCDRILVLDAGRVVEFDTPENLLSNEGSAFSKM 1470
|
Length = 1622 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 4e-32
Identities = 75/241 (31%), Positives = 119/241 (49%), Gaps = 27/241 (11%)
Query: 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD-VE-- 1047
IE+ ++ Y + L+ ++++ L+G SGCGKST++ + R D V
Sbjct: 1 AIEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGV 57
Query: 1048 --QGSVRVDGMDV--RELDVHWYRKHTALVSQEPVIYAGNIRDNIVFG------KLDASE 1097
+G V DG D+ +++DV R+ +V Q+P + +I DNI +G K
Sbjct: 58 RIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKEL 117
Query: 1098 NEVVEAA--RAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLD 1155
+E+VE + +AA E L D + LSGGQ+QR+ IARA+ P +LLLD
Sbjct: 118 DEIVEESLKKAALWDEVKDRLHDS--------ALGLSGGQQQRLCIARALAVEPEVLLLD 169
Query: 1156 EATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLN-TIKKLDSIALVADGRVVERGTYAQ 1214
E TSALD + ++E + + T ++V H + + D A DG +VE G Q
Sbjct: 170 EPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQ 229
Query: 1215 L 1215
+
Sbjct: 230 I 230
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 7e-32
Identities = 74/247 (29%), Positives = 136/247 (55%), Gaps = 6/247 (2%)
Query: 979 GTRGSKLQKISGKIEMRRVDFAYPS--RPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTV 1036
G+ S L + G+I++ + Y + +P VL+ +KPG VG+ G++G GKS++
Sbjct: 7 GSSNSGLVGLGGEIKIHDLCVRYENNLKP---VLKHVKAYIKPGQKVGICGRTGSGKSSL 63
Query: 1037 IGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDAS 1096
R D+ G + +DG+D+ +L +H R +++ Q+P++++G+IR N+ + +
Sbjct: 64 SLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLD-PECKCT 122
Query: 1097 ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDE 1156
++ + EA A + SL G + E G S GQRQ +ARA +R +IL++DE
Sbjct: 123 DDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDE 182
Query: 1157 ATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLT 1216
AT+++D+ +E ++Q+ + RT + +AHR++TI D + +++ G +VE T L
Sbjct: 183 ATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLL 242
Query: 1217 HMRGAFF 1223
F
Sbjct: 243 AQEDGVF 249
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 7e-32
Identities = 75/221 (33%), Positives = 121/221 (54%), Gaps = 17/221 (7%)
Query: 370 SIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRL---QL 426
++ + D +L V+ G+ ++G SGSGKST + + R + G V IDG DI + +L
Sbjct: 37 TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKEL 96
Query: 427 KWVRRE-MGLVSQEHALF-GTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLP-EGY 483
+ +RR+ + +V Q AL ++ +N+ FG + AA A + + EG+
Sbjct: 97 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEA---LELVGLEGW 153
Query: 484 ETK-VGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALD--QAS 540
E K E LSGG +QR+ +ARA+ +P ILL+DEA SALD +Q+ L QA
Sbjct: 154 EHKYPDE----LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE 209
Query: 541 LGRTTLVVAHKLS-TVRNADLIAVVDNGCLVEIGTHNDLIN 580
L +T + + H L +R D IA++ +G LV++GT +++
Sbjct: 210 LQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 1e-31
Identities = 57/218 (26%), Positives = 103/218 (47%), Gaps = 48/218 (22%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
IE ++ Y + L D +L V+ G+ L+G +G+GK+T I ++ D G +
Sbjct: 1 IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALFGT-SIKDNIMFGKLDATMDEVIAAATAANAH 473
++ G DI++ + V+R +G + +E +L+ ++++N+
Sbjct: 58 KVLGKDIKKEPEE-VKRRIGYLPEEPSLYENLTVRENLK--------------------- 95
Query: 474 NFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQ 533
LSGG KQR+A+A+A++ +P +L+LDE TS LD ES
Sbjct: 96 --------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW 135
Query: 534 NALDQ-ASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCL 569
L + G+T L+ +H L D +A+++NG +
Sbjct: 136 ELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 2e-31
Identities = 63/200 (31%), Positives = 93/200 (46%), Gaps = 16/200 (8%)
Query: 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
+E+ V ++ VL ++ V+ G V ++G SGCGKST++ LI G
Sbjct: 3 LLEIEGVSKSFGGVE---VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGE 59
Query: 1051 VRVDGMDVRELDVHWYRKHTALVSQEPVIYAG-NIRDNIVFGKLDASENEVVEAARAANA 1109
V +DG V V QE + + DN+ G L+ EA A
Sbjct: 60 VLLDGRPVTG-----PGPDIGYVFQEDALLPWLTVLDNVALG-LELRGKSKAEARERAKE 113
Query: 1110 HEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVV 1169
+ L G+E + QLSGG RQR+AIARA+ P +LLLDE ALD + + +
Sbjct: 114 LLELVGLA-GFE---DKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREEL 169
Query: 1170 QEALDRIM--MGRTTIVVAH 1187
Q+ L R+ +T ++V H
Sbjct: 170 QDELLRLWEETRKTVLLVTH 189
|
Length = 248 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 2e-31
Identities = 70/236 (29%), Positives = 127/236 (53%), Gaps = 22/236 (9%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
I+ E+V FSYP+ ++ LK+ + ++ G+ VA++G +GSGKST ++ G +
Sbjct: 8 IKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQ--EHALFGTSIKDNIMFG----KLD-ATMDEVIA-A 466
+IDG+ I + LK +R+++G++ Q ++ G +++D+I FG K+ M ++I
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDL 126
Query: 467 ATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDS 526
A +++ + P+ LSGGQKQR+AIA + NP I++ DE+TS LD
Sbjct: 127 AKKVGMEDYLDKEPQN-----------LSGGQKQRVAIASVLALNPEIIIFDESTSMLDP 175
Query: 527 ES-ETLVQNALDQASLGRTTLV-VAHKLSTVRNADLIAVVDNGCLVEIGTHNDLIN 580
+ + + +D + TL+ + H + AD + V G L+ G +++N
Sbjct: 176 KGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231
|
Length = 271 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 2e-31
Identities = 75/258 (29%), Positives = 129/258 (50%), Gaps = 36/258 (13%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
IE +++ +YP LKD NL++ G+ VA++G SG+GKST + + D G +
Sbjct: 4 IEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 415 RIDGVDIRRL---QLKWVRREMGLVSQEHALFG-TSIKDNIMFGKLDATMDEVIAAATAA 470
+GV I +L +L+ +RR++G++ Q+ L S+ +N++ G+L T +
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYT----------S 111
Query: 471 NAHNFIRQLPE-------------GYETKVGERGALLSGGQKQRIAIARAIIKNPVILLL 517
+ + G K +R + LSGGQ+QR+AIARA+++ P I+L
Sbjct: 112 TWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILA 171
Query: 518 DEATSALDSESETLVQNALDQASL--GRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGT 574
DE ++LD ES V + L + G T +V H++ + AD I + G +V G
Sbjct: 172 DEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGP 231
Query: 575 HNDL----INRIDGHYAK 588
++L ++ I G+
Sbjct: 232 ASELTDEALDEIYGNEIS 249
|
Length = 258 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 4e-31
Identities = 69/244 (28%), Positives = 121/244 (49%), Gaps = 40/244 (16%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKST----VIGLIQRFYDVE 1047
IE+R + ++ R VL+ ++V+ G + ++G SG GKST ++GL++ +
Sbjct: 1 IELRGLTKSFGGRT---VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP----D 53
Query: 1048 QGSVRVDGMDVRELDVHWY---RKHTALVSQEPVIYAG-NIRDNIVFG---KLDASENEV 1100
G V +DG D+ L R+ ++ Q ++ + +N+ F SE E+
Sbjct: 54 SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEI 113
Query: 1101 VEAARAANAHEFISSLKDGYETECGERGV------QLSGGQRQRIAIARAIIRNPTILLL 1154
E E + ++ G RG +LSGG ++R+A+ARA+ +P +LL
Sbjct: 114 REIVL-----EKLEAV--------GLRGAEDLYPAELSGGMKKRVALARALALDPELLLY 160
Query: 1155 DEATSALD-VQSEQVVQEALD-RIMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGT 1211
DE T+ LD + S + + +G T+I+V H L+T + D IA++ DG++V GT
Sbjct: 161 DEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGT 220
Query: 1212 YAQL 1215
+L
Sbjct: 221 PEEL 224
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 8e-31
Identities = 57/217 (26%), Positives = 103/217 (47%), Gaps = 46/217 (21%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
IE+R + Y + L S+ V+ G GL+G +G GK+T+I +I + G +
Sbjct: 1 IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHE 1111
+V G D+++ + ++ + +EP +Y L EN
Sbjct: 58 KVLGKDIKK-EPEEVKRRIGYLPEEPSLY----------ENLTVREN------------- 93
Query: 1112 FISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQE 1171
++LSGG +QR+A+A+A++ +P +L+LDE TS LD +S + E
Sbjct: 94 -----------------LKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWE 136
Query: 1172 ALDRIMMGRTTIVVA-HRLNTIKKL-DSIALVADGRV 1206
L + TI+++ H L ++L D +A++ +GR+
Sbjct: 137 LLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 9e-31
Identities = 64/222 (28%), Positives = 99/222 (44%), Gaps = 46/222 (20%)
Query: 993 EMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVR 1052
E+ + Y R VL S+ ++ G VG++G +G GKST++ + G +
Sbjct: 1 EVENLSVGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 1053 VDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEF 1112
+DG D+ L + A V Q A
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQ---------------------------ALELLG---- 86
Query: 1113 ISSLKDGYETECGERGV-QLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQE 1171
++ L D R +LSGG+RQR+ +ARA+ + P ILLLDE TS LD+ + + E
Sbjct: 87 LAHLAD--------RPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLE 138
Query: 1172 ALDRI--MMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERG 1210
L R+ G+T ++V H LN + D + L+ DGR+V +G
Sbjct: 139 LLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (330), Expect = 1e-30
Identities = 138/540 (25%), Positives = 244/540 (45%), Gaps = 55/540 (10%)
Query: 79 FVY--LGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVI 136
VY LG + V F + +S ++ L ++LR + FF + T VI
Sbjct: 954 VVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTN---PTGRVI 1010
Query: 137 NSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLIIPGMIY 196
N SKD I ++ + +F+ +S A S +SL A LL+L Y
Sbjct: 1011 NRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVS-TISLWAIMPLLILF-----Y 1064
Query: 197 GKYLIYLSKK-------------AYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEA 243
YL Y S Y ++G+A LSSI+ ++ +I +
Sbjct: 1065 AAYLYYQSTSREVRRLDSVTRSPIYAQFGEA----LNGLSSIRAYKAYDRMAKINGKS-- 1118
Query: 244 ILDSTTKLGIKQGTAKG-LAVGSTGLS-FAIWAFLAWYGSHLVMFKGETGGKIYAAGI-- 299
+D+ + + ++ L + L IW + V+ G + A
Sbjct: 1119 -MDNNIRFTLANTSSNRWLTIRLETLGGVMIWLT----ATFAVLRNGNAENQAGFASTMG 1173
Query: 300 ---SFILSGLSLGSALPELKYFTEASI-AASRIFDRID---RVPEIDGEDTKGLVLDEVR 352
S+ L+ +L S + E S+ + R+ + ID I E+ + + R
Sbjct: 1174 LLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAII-ENNRPVSGWPSR 1232
Query: 353 GEIEFEHVKFSY-PSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADD 411
G I+FE V Y P P VL + V + V +VG +G+GKS+ + + R + +
Sbjct: 1233 GSIKFEDVHLRYRPGLPP--VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEK 1290
Query: 412 GIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNI-MFGKL-DATMDEVIAAATA 469
G + ID D+ + L +RR + ++ Q LF +++ NI F + DA + E A
Sbjct: 1291 GRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWE---ALER 1347
Query: 470 ANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESE 529
A+ + I + P G + +V E G S GQ+Q +++ARA+++ IL+LDEAT+++D ++
Sbjct: 1348 AHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTD 1407
Query: 530 TLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKM 589
+L+Q + + T LV+AH+L+T+ + D I V+ +G ++E + +L++R + +M
Sbjct: 1408 SLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRM 1467
|
Length = 1495 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 1e-30
Identities = 71/229 (31%), Positives = 120/229 (52%), Gaps = 23/229 (10%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
+E+R V ++ D + S+++K G V L+G SGCGK+T++ +I F G +
Sbjct: 6 LEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI 62
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIYA----GNIRDNIVFG-KLDASENEVVEAARA 1106
+DG D+ ++ ++ +V Q YA + +N+ FG K+ + AR
Sbjct: 63 LLDGEDITDVPPE--KRPIGMVFQS---YALFPHMTVEENVAFGLKVRKKLKKAEIKARV 117
Query: 1107 ANAHEFISSLKDGYETECGERGV-QLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQS 1165
A E + +G+ +R QLSGGQ+QR+A+ARA++ P +LLLDE SALD +
Sbjct: 118 EEALELV--GLEGFA----DRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKL 171
Query: 1166 EQVVQEALDRI--MMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGT 1211
+ +++ L + +G T + V H + D IA++ DGR+ + GT
Sbjct: 172 REQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGT 220
|
Length = 352 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 1e-30
Identities = 79/227 (34%), Positives = 122/227 (53%), Gaps = 22/227 (9%)
Query: 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI 413
EIEF+ V +S +LKD ++K + G +VG SG+GKST I L+ R D +G
Sbjct: 3 EIEFKEVSYS---SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGS 59
Query: 414 VRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAH 473
+ IDGVDI+ + + +RR++G+V Q+ LF ++KDNI +G + + +
Sbjct: 60 ILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPM-------LKGEKNVDVE 112
Query: 474 NF--IRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSES--- 528
+ I L + Y T+ + LSGG+ QR++IAR + NP +LLLDE TSALD S
Sbjct: 113 YYLSIVGLNKEYATRDVKN---LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEI 169
Query: 529 -ETLVQNALDQASLGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIG 573
E L+ ++ + T + + H + R D A ++ G LVE
Sbjct: 170 IEELIVKLKNK--MNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYA 214
|
Length = 241 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 1e-30
Identities = 60/215 (27%), Positives = 86/215 (40%), Gaps = 60/215 (27%)
Query: 993 EMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVR 1052
E+ + F Y R L S+ +K G V LVG +G GKST++ I G
Sbjct: 1 EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGE-- 55
Query: 1053 VDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEF 1112
I+ D ++ + E R
Sbjct: 56 -----------------------------------ILIDGKDIAKLPLEELRRR------ 74
Query: 1113 ISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEA 1172
I + QLSGGQRQR+A+ARA++ NP +LLLDE TS LD S + + E
Sbjct: 75 IGYV------------PQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLEL 122
Query: 1173 LDRIMM-GRTTIVVAHRLNTIKKL-DSIALVADGR 1205
L + GRT I+V H + D + ++ DG+
Sbjct: 123 LRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 1e-30
Identities = 79/234 (33%), Positives = 116/234 (49%), Gaps = 32/234 (13%)
Query: 360 VKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGV 419
V+FSY P F+L V AG+ VA++G SG+GKST + L+ F G + I+GV
Sbjct: 7 VRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGV 61
Query: 420 DIRRLQLKWVRREMGLVSQEHALFG-TSIKDNIMFG-----KLDATMDEVIAAATAA-NA 472
D R + ++ QE+ LF ++ NI G KL+A E + AA A
Sbjct: 62 DHTASPP--AERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGL 119
Query: 473 HNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALD----SES 528
F+++LP LSGGQ+QR+A+AR +++ ILLLDE SALD +E
Sbjct: 120 AGFLKRLPGE-----------LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEM 168
Query: 529 ETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581
LV D+ T L+V H AD + +DNG + G+ +L++
Sbjct: 169 LALVSQLCDER--KMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220
|
Length = 231 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 3e-30
Identities = 75/244 (30%), Positives = 125/244 (51%), Gaps = 37/244 (15%)
Query: 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
IE+R V ++ R +L ++V G + ++G SG GKST++ LI ++G
Sbjct: 8 LIEVRGVTKSFGDRV---ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGE 64
Query: 1051 VRVDGMDVREL-DVHWY--RKHTALVSQEPVIYAG-NIRDNIVF-----GKLDASE-NEV 1100
+ +DG D+ +L + Y RK ++ Q+ +++ + +N+ F KL S E+
Sbjct: 65 ILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIREL 124
Query: 1101 VEAA------RAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLL 1154
V R A A + S +LSGG R+R+A+ARAI +P +L L
Sbjct: 125 VLMKLELVGLRGAAADLYPS---------------ELSGGMRKRVALARAIALDPELLFL 169
Query: 1155 DEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGT 1211
DE TS LD S V+ E + + +G T I+V H L+++ + D +A++ADG+V+ GT
Sbjct: 170 DEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGT 229
Query: 1212 YAQL 1215
+L
Sbjct: 230 PEEL 233
|
Length = 263 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 119 bits (302), Expect = 3e-30
Identities = 75/243 (30%), Positives = 121/243 (49%), Gaps = 28/243 (11%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
IE+ + YP+ AL + S+ + PG V L+G SG GKST++ + + GSV
Sbjct: 1 IEVENLSKTYPNGKKAL--KDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
Query: 1052 RVDGMDVREL---DVHWYRKHTALVSQE-PVIYAGNIRDNIVFGKLDA-----------S 1096
+DG D+ +L + R+ ++ Q+ +I ++ +N++ G+L
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFP 118
Query: 1097 ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDE 1156
+ E A A L D QLSGGQ+QR+AIARA+++ P ++L DE
Sbjct: 119 KEEKQRALAALER----VGLLDKAYQRAD----QLSGGQQQRVAIARALMQQPKLILADE 170
Query: 1157 ATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYA 1213
++LD S + V + L RI G T IV H+++ ++ D I + DGR+V G A
Sbjct: 171 PVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPA 230
Query: 1214 QLT 1216
+LT
Sbjct: 231 ELT 233
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 4e-30
Identities = 68/226 (30%), Positives = 108/226 (47%), Gaps = 19/226 (8%)
Query: 992 IEMRRVDFAYPSRPDAL-VLRQFSMEVKPGTSVGLVGKSGCGKST---VIGLIQRFYDVE 1047
IE++ + Y + + L+ S+ ++ G V +VG SG GKST ++G + R
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PT 57
Query: 1048 QGSVRVDGMDVRELD----VHWYRKHTALVSQEP-VIYAGNIRDNIVFGKLDASENEVVE 1102
G VRVDG D+ +L + R+H V Q ++ +N+ +L V +
Sbjct: 58 SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENV---ELPLLLAGVPK 114
Query: 1103 AARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALD 1162
R A E + + G +LSGGQ+QR+AIARA+ +P I+L DE T LD
Sbjct: 115 KERRERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLD 172
Query: 1163 VQSEQVVQEALDRI--MMGRTTIVVAHRLNTIKKLDSIALVADGRV 1206
++ + V E L + G T +VV H + D I + DG++
Sbjct: 173 SETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (302), Expect = 4e-30
Identities = 77/237 (32%), Positives = 114/237 (48%), Gaps = 32/237 (13%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI- 413
IE + Y D LKD NL + K AL+G SG GKST + + R D G
Sbjct: 8 IEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR 64
Query: 414 ----VRIDGVDIR--RLQLKWVRREMGLVSQEHALFGTSIKDNIMFG-----KLDATMDE 462
V +DG +I ++ + +RR +G+V Q+ F SI DN+ +G D +DE
Sbjct: 65 VEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDE 124
Query: 463 VIAAA-TAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEAT 521
++ ++ A L + + ++ + LSGGQ+QR+ IARA+ P +LL+DE T
Sbjct: 125 IVESSLKKAA-------LWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPT 177
Query: 522 SALDSES----ETLVQNALDQASLGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIG 573
SALD S E L+ + T ++V H + R +D A G LVE G
Sbjct: 178 SALDPISTLKIEELITELKKKY----TIVIVTHNMQQAARVSDYTAFFYLGELVEFG 230
|
Length = 253 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 117 bits (297), Expect = 9e-30
Identities = 66/230 (28%), Positives = 108/230 (46%), Gaps = 22/230 (9%)
Query: 992 IEMRRVDFAYPSRPDAL-VLRQFSMEVKPGTSVGLVGKSGCGKST---VIGLIQRFYDVE 1047
IE++ V Y + + L+ ++E++ G V +VG SG GKST ++G + +
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PT 58
Query: 1048 QGSVRVDGMDVRELD----VHWYRKHTALVSQE-PVIYAGNIRDNIVFGKLDASENEVVE 1102
G V ++G D+ +L RK V Q ++ + +N+ L A ++
Sbjct: 59 SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRR 118
Query: 1103 AARAANAHEF--ISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSA 1160
A E + + +LSGGQ+QR+AIARA+I NP I+L DE T
Sbjct: 119 KRAAEELLEVLGLEDRLLKKKPS------ELSGGQQQRVAIARALINNPKIILADEPTGN 172
Query: 1161 LDVQSEQVVQEALDRI--MMGRTTIVVAHRLNTIKKLDSIALVADGRVVE 1208
LD ++ + V E L + G+T I+V H K D + + DG++ E
Sbjct: 173 LDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 9e-30
Identities = 68/229 (29%), Positives = 112/229 (48%), Gaps = 19/229 (8%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
IE V Y A+ ++E+ G + L+G SG GK+T + +I R + G +
Sbjct: 1 IEFENVTKRYGGGKKAV--NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIYAG-----NIRDNIVFGKLDASENEVVEAARA 1106
+DG D+RE D R+ V Q+ G + +NI L + +
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQ----IGLFPHMTVEENIA---LVPKLLKWPKEKIR 111
Query: 1107 ANAHEFISSLKDGYETECGER-GVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQS 1165
A E + +L E +R +LSGGQ+QR+ +ARA+ +P +LL+DE ALD +
Sbjct: 112 ERADELL-ALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPIT 170
Query: 1166 EQVVQEALDRI--MMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGT 1211
+QE R+ +G+T + V H ++ +L D IA++ +G +V+ GT
Sbjct: 171 RDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGT 219
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 9e-30
Identities = 72/243 (29%), Positives = 117/243 (48%), Gaps = 33/243 (13%)
Query: 992 IEMRRVDFAYPSRPDALV--------LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRF 1043
+ +R + Y SR V + S +++ G ++GLVG+SG GKST+ ++
Sbjct: 281 LSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL 340
Query: 1044 YDVEQGSVRVDGMDV--RELDVHWYRKHTALVSQEPVIYAG-----NIRDNI-----VFG 1091
GS+ DG D+ ++ R+ +V Q+P Y+ + D + + G
Sbjct: 341 LPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDP--YSSLNPRMTVGDILAEPLRIHG 398
Query: 1092 KLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTI 1151
+E AR A E + L + +LSGGQRQR+AIARA+ P +
Sbjct: 399 GGSGAERR----ARVAELLELVG-LPPEF---LDRYPHELSGGQRQRVAIARALALEPKL 450
Query: 1152 LLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKKL-DSIALVADGRVVE 1208
L+LDE SALDV + V L + +G T + ++H L ++ + D +A++ DGR+VE
Sbjct: 451 LILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVE 510
Query: 1209 RGT 1211
G
Sbjct: 511 EGP 513
|
Length = 539 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 9e-30
Identities = 70/238 (29%), Positives = 115/238 (48%), Gaps = 26/238 (10%)
Query: 992 IEMRRVDFAYPSRPDAL-VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
+ +R + Y A L S+E++ G ++G+VG+SG GKST+ L+ GS
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 1051 VRVDGMDVRELD-VHWYRKHTALVSQEP-------VIYAGNIRDNIVFGKLDASENEVVE 1102
+ +DG + + + +V Q+P + + + L S+ + E
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAE 123
Query: 1103 AARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALD 1162
S L R +LSGGQRQRIAIARA+I P +L+LDE TSALD
Sbjct: 124 LLDQVGLPP--SFLDR--------RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALD 173
Query: 1163 --VQSE--QVVQEALDRIMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
VQ++ ++ E + G T + ++H L ++ + D IA++ +G++VE G +L
Sbjct: 174 VSVQAQILNLLLEL--KKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEEL 229
|
Length = 252 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 1e-29
Identities = 72/224 (32%), Positives = 118/224 (52%), Gaps = 16/224 (7%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+E E+V + + L D NL + G+ V L+G SG GK+T + ++ + G +
Sbjct: 1 VELENVTKRFGNVT---ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALF-GTSIKDNIMFG-KLDATMDEVIAAATAANA 472
I G D+ L K R++ +V Q +AL+ ++ DNI FG KL + I A
Sbjct: 58 YIGGRDVTDLPPK--DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVA 115
Query: 473 HNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLV 532
+ Q+ + K + LSGGQ+QR+A+ RAI++ P + L+DE S LD++ +
Sbjct: 116 E--LLQIEHLLDRKPKQ----LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQM 169
Query: 533 QNALD--QASLGRTTLVVAH-KLSTVRNADLIAVVDNGCLVEIG 573
+ L Q LG TT+ V H ++ + AD IAV+++G + +IG
Sbjct: 170 RAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 2e-29
Identities = 67/219 (30%), Positives = 110/219 (50%), Gaps = 24/219 (10%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDV-RELDVHWYR 1067
VL+ S+ V+ G V ++G SG GKST++ + + + GS+ VDG DV + D+ R
Sbjct: 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLR 76
Query: 1068 KHTALVSQEPVIYAG-NIRDNIVFG-----KLDASENEVVEAARAANAHEFISSLKDGYE 1121
+ +V Q+ ++ + +N+ KL +E E A ++ D Y
Sbjct: 77 RKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAR--EKALELLEKVGLADKADAYP 134
Query: 1122 TECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM---- 1177
QLSGGQ+QR+AIARA+ +P ++L DE TSALD ++V E LD +
Sbjct: 135 -------AQLSGGQQQRVAIARALAMDPKVMLFDEPTSALD---PELVGEVLDVMKDLAE 184
Query: 1178 MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQL 1215
G T I+V H + ++ D + + G+++E G +
Sbjct: 185 EGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223
|
Length = 240 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-29
Identities = 62/221 (28%), Positives = 100/221 (45%), Gaps = 44/221 (19%)
Query: 356 EFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVR 415
E E++ Y R VL D +L ++AG+ V ++G +G+GKST + + G +
Sbjct: 1 EVENLSVGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 416 IDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNF 475
+DG D+ L K + R++ V Q L G + D +E
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQALELLGLA-------HLADRPFNE------------- 97
Query: 476 IRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNA 535
LSGG++QR+ +ARA+ + P ILLLDE TS LD + +
Sbjct: 98 ------------------LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL 139
Query: 536 LDQ--ASLGRTTLVVAHKLS-TVRNADLIAVVDNGCLVEIG 573
L + G+T ++V H L+ R AD + ++ +G +V G
Sbjct: 140 LRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 2e-29
Identities = 79/242 (32%), Positives = 124/242 (51%), Gaps = 32/242 (13%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
IEF++V + + VL + +L + G+ V ++G SGSGKST + + + + G +
Sbjct: 2 IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58
Query: 415 RIDGVDIR--RLQLKWVRREMGLVSQEHALFG--TSIKDNIMFGKLDATMDEVIAAATAA 470
+DG+ + ++ + +R+E G+V Q+ LF T++ +N+MFG L + A+
Sbjct: 59 IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTAL-ENVMFGPLR------VRGASKE 111
Query: 471 NAHNFIRQLPEGYETKVG--ERG----ALLSGGQKQRIAIARAIIKNPVILLLDEATSAL 524
A R+L KVG ER + LSGGQ+QR+AIARA+ P ++L DE TSAL
Sbjct: 112 EAEKQAREL----LAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSAL 167
Query: 525 DSESETLVQNAL----DQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLI 579
D E L L D A G T ++V H++ A + +D G + E G LI
Sbjct: 168 DPE---LRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224
Query: 580 NR 581
Sbjct: 225 KN 226
|
Length = 240 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 3e-29
Identities = 66/238 (27%), Positives = 109/238 (45%), Gaps = 38/238 (15%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
IE V Y ++ + ++ ++ G + L+G SG GK+T + +I R + G +
Sbjct: 2 IEFENVSKRYGNKK---AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVV--------EA 1103
+DG D+ +LD R+ V Q+ +F L +EN +
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQ----------IGLFPHLTVAENIATVPKLLGWDKE 108
Query: 1104 ARAANAHEFI-------SSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDE 1156
A E + S D Y E LSGGQ+QR+ +ARA+ +P ILL+DE
Sbjct: 109 RIKKRADELLDLVGLDPSEYADRYPHE-------LSGGQQQRVGVARALAADPPILLMDE 161
Query: 1157 ATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGT 1211
ALD + + +QE + + +G+T + V H ++ KL D IA++ G +V+ T
Sbjct: 162 PFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDT 219
|
Length = 309 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 4e-29
Identities = 71/232 (30%), Positives = 114/232 (49%), Gaps = 17/232 (7%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
IE + F YP L+ S+E++ G V L+G +G GKST++ L+ G V
Sbjct: 4 IEAENLSFRYP--GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 1052 RVDGMDVR-ELDVHWYRKHTALVSQEPV--IYAGNIRDNIVFGK--LDASENEVVEAARA 1106
VDG+D E + R+ LV Q P ++ + D + FG L E+ E
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE 121
Query: 1107 ANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSE 1166
A + L++ + LSGGQ+QR+AIA + P ILLLDE T+ LD +
Sbjct: 122 ALE---LVGLEELLDRPPFN----LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGR 174
Query: 1167 QVVQEALDRIM--MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
+ + E L ++ G+T I+V H L + + D + ++ DG+++ G A++
Sbjct: 175 RELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEI 226
|
Length = 235 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 7e-29
Identities = 67/204 (32%), Positives = 109/204 (53%), Gaps = 21/204 (10%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
IEF +V +YP + L N+ + AG+ V LVG SG+GKST + L+ + G +
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 415 RIDGVDI---RRLQLKWVRREMGLVSQEHALFGT-SIKDNIMF-----GKLDATMDEVIA 465
R++G D+ R + ++RR++G+V Q+ L ++ +N+ F G + + +
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVP 118
Query: 466 AATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALD 525
AA + + G K A LSGG++QR+AIARAI+ +P IL+ DE T LD
Sbjct: 119 AA--------LELV--GLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLD 168
Query: 526 SESETLVQNALDQASLGRTTLVVA 549
++ + N L + + TT+VVA
Sbjct: 169 PDTTWEIMNLLKKINKAGTTVVVA 192
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 7e-29
Identities = 61/216 (28%), Positives = 109/216 (50%), Gaps = 26/216 (12%)
Query: 358 EHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRID 417
+++ + + ++L D NL ++ GK A++G SGSGKST + ++ D G V ++
Sbjct: 2 KNISKKFGDK---VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLN 58
Query: 418 GVDIRRLQ----LKWVRREMGLVSQEHALFGT-SIKDNIMFG----KLDAT--MDEVIAA 466
G + L K+ R ++G + Q AL ++++N+ G KL ++ A
Sbjct: 59 GQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEA 118
Query: 467 ATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDS 526
+ ++Q YE LSGG++QR+A+ARAI+K P ++L DE T +LD
Sbjct: 119 LEKVGLNLKLKQKI--YE---------LSGGEQQRVALARAILKPPPLILADEPTGSLDP 167
Query: 527 ESETLVQNALDQ-ASLGRTTLVVAHKLSTVRNADLI 561
++ V + L + G+T ++V H + AD +
Sbjct: 168 KNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRV 203
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 9e-29
Identities = 81/234 (34%), Positives = 123/234 (52%), Gaps = 25/234 (10%)
Query: 355 IEFEHVKFSYPSRPDSIV-LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI 413
IE +++ +P +I L + +L + AG+ ++GASG+GKST I + G
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 414 VRIDGVDIRRL---QLKWVRREMGLVSQEHALFGT-SIKDNIMFG-KLDATMDEVIAAAT 468
V +DG D+ L +L+ RR++G++ Q L + ++ DN+ +L T I A
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARV 121
Query: 469 AANAHNFIRQLPE--GYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDS 526
+L E G K A LSGGQKQR+AIARA+ NP +LL DEATSALD
Sbjct: 122 T--------ELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDP 173
Query: 527 ESETLVQNALD-----QASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGT 574
+ ++ L+ LG T +++ H++ V+ D +AV+D G LVE GT
Sbjct: 174 AT---TRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGT 224
|
Length = 343 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 1e-28
Identities = 76/242 (31%), Positives = 122/242 (50%), Gaps = 27/242 (11%)
Query: 990 GKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD-VE- 1047
GKI ++ +D Y D L++ +++++ L+G SGCGKST + + R D +
Sbjct: 2 GKISVKDLDLFYG---DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPS 58
Query: 1048 ---QGSVRVDGMDV--RELDVHWYRKHTALVSQEPVIYAGNIRDNIVFG------KLDAS 1096
+G V +DG D+ ++DV+ RK +V Q+P + +I DN+ +G K
Sbjct: 59 VKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKK 118
Query: 1097 ENEVVEAA--RAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLL 1154
+E+VE + AA E LK + LSGGQ+QR+ IARA+ P +LL+
Sbjct: 119 LDEIVEKSLKGAALWDEVKDRLKKS--------ALGLSGGQQQRLCIARALAVEPEVLLM 170
Query: 1155 DEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYA 1213
DE TSALD S ++E + + T ++V H + ++ D A +G +VE G
Sbjct: 171 DEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTV 230
Query: 1214 QL 1215
L
Sbjct: 231 DL 232
|
Length = 250 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 1e-28
Identities = 67/217 (30%), Positives = 112/217 (51%), Gaps = 17/217 (7%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRR 431
LK+ +L+V+ G ++G +GSGKS + + F D G + ++G DI L +R
Sbjct: 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKR 71
Query: 432 EMGLVSQEHALF-GTSIKDNIMFG-KLDATMDEVIAAATAANAHNFIRQLPE--GYETKV 487
++ V Q +ALF ++ NI +G K + I + ++ E G + +
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERK--------VLEIAEMLGIDHLL 123
Query: 488 GERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQA--SLGRTT 545
+ LSGG++QR+AIARA++ NP ILLLDE SALD ++ ++ L + G T
Sbjct: 124 NRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTV 183
Query: 546 LVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581
L V H AD +A++ NG L+++G ++ +
Sbjct: 184 LHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (288), Expect = 2e-28
Identities = 71/220 (32%), Positives = 115/220 (52%), Gaps = 22/220 (10%)
Query: 1006 DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD------VEQGSVRVDGMDVR 1059
+ ++ +M++ ++G SGCGK+T++ I R D VE G + G D+
Sbjct: 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVE-GKIYFKGQDIY 73
Query: 1060 E--LDVHWYRKHTALVSQEPVIYAGNIRDNIVFG------KLDASENEVVEAARAANAHE 1111
+ LDV YRK +V Q+P + +I DN+ FG K + +VE + A
Sbjct: 74 DPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAA-- 131
Query: 1112 FISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQE 1171
L D ++E + G +LSGGQ+QR+ IARA+ P ++LLDE TSALD + Q +++
Sbjct: 132 ----LWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEK 187
Query: 1172 ALDRIMMGRTTIVVAHRL-NTIKKLDSIALVADGRVVERG 1210
L+ + T ++V H + I+ D IA + G ++E G
Sbjct: 188 LLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYG 227
|
Length = 250 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 3e-28
Identities = 69/241 (28%), Positives = 112/241 (46%), Gaps = 31/241 (12%)
Query: 996 RVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKST----VIGLIQRFYDVEQGSV 1051
V+FA +R S EV+PG +G+VG+SG GKST ++GL+ + G V
Sbjct: 12 TVEFATDGGR-VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEV 70
Query: 1052 RVDGMDVRELDVHWYR----KHTALVSQE------PVIYAGN-IRDNIVFGKL---DASE 1097
+DG D+ L R K A++ Q+ PV+ G+ IR+ + +
Sbjct: 71 ILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEAR 130
Query: 1098 NEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEA 1157
VE + +D Y QLSGG RQR+ IA A+ P +L+ DE
Sbjct: 131 KRAVELLEQVGLPD--PERRDRYPH-------QLSGGMRQRVMIAMALALKPKLLIADEP 181
Query: 1158 TSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQ 1214
T+ALDV ++ + + L + +G + + H L + +L D + ++ G +VE G +
Sbjct: 182 TTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEE 241
Query: 1215 L 1215
+
Sbjct: 242 I 242
|
Length = 539 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 4e-28
Identities = 75/232 (32%), Positives = 120/232 (51%), Gaps = 17/232 (7%)
Query: 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI 413
I +VK + + L D +L +K+G+ VAL+G SG+GKST + ++ D G
Sbjct: 2 SIRINNVKKRFGAFG---ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGR 58
Query: 414 VRIDGVDIRRLQLKWVR-REMGLVSQEHALF-GTSIKDNIMFGKLDATMDEVIAAATAAN 471
+R++G + + VR R++G V Q +ALF ++ DNI FG L + A A
Sbjct: 59 IRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFG-LKVRKERPSEAEIRAR 117
Query: 472 AHNFIR--QLPEGYETKVGERGAL-LSGGQKQRIAIARAIIKNPVILLLDEATSALDSES 528
+R QL + +R LSGGQ+QR+A+ARA+ P +LLLDE ALD++
Sbjct: 118 VEELLRLVQL-----EGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 172
Query: 529 ETLVQNALD--QASLGRTTLVVAHKLS-TVRNADLIAVVDNGCLVEIGTHND 577
++ L LG TT+ V H + AD + V++ G + ++G ++
Sbjct: 173 RKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDE 224
|
Length = 345 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 5e-28
Identities = 70/248 (28%), Positives = 124/248 (50%), Gaps = 40/248 (16%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+E E++ YP+ LK+ NL + G+ VA++G SG+GKST + + R + G +
Sbjct: 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 415 RIDGVDIRRLQ---LKWVRREMGLVSQEHALFG-TSIKDNIMFGKLDATMDEVIAAATAA 470
++G DI +L+ L+ +RR +G++ Q + L ++ +N++ G+L
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRL-------------- 105
Query: 471 NAHNFIRQL-----PEGYE------TKVG------ERGALLSGGQKQRIAIARAIIKNPV 513
R L E E +VG +R LSGGQ+QR+AIARA+ + P
Sbjct: 106 GYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPD 165
Query: 514 ILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLV 570
++L DE ++LD ++ V + L + + G T ++ H++ + AD I + G +V
Sbjct: 166 LILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV 225
Query: 571 EIGTHNDL 578
G ++L
Sbjct: 226 FDGAPSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 6e-28
Identities = 65/210 (30%), Positives = 108/210 (51%), Gaps = 23/210 (10%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDV--RELDVHWY 1066
VL+ + VK G V ++G SG GKST++ I + + G++ +DG+ + + +++
Sbjct: 15 VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINEL 74
Query: 1067 RKHTALVSQEPVIYAG-NIRDNIVFGK---LDASENEVVEAARAANAHEFISSLKDGYET 1122
R+ +V Q+ ++ + +NI S+ E E A ++ D Y
Sbjct: 75 RQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYP- 133
Query: 1123 ECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM---- 1178
QLSGGQ+QR+AIARA+ NP ++L DE TSALD ++V E LD +M
Sbjct: 134 ------AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALD---PELVGEVLD-VMKDLAE 183
Query: 1179 -GRTTIVVAHRLNTIKKL-DSIALVADGRV 1206
G T +VV H + +++ D + + DGR+
Sbjct: 184 EGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 6e-28
Identities = 76/231 (32%), Positives = 120/231 (51%), Gaps = 20/231 (8%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
IE ++ + L D NL+V G VAL+G SGSGKST + ++ D G +
Sbjct: 1 IEIANISKRFG---SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRI 57
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALFG-TSIKDNIMFGKLDATMDEVIAAATAANAH 473
R++G D R+ + R++G V Q +ALF +++DNI FG + + A A
Sbjct: 58 RLNGQDATRVHAR--DRKIGFVFQHYALFKHLTVRDNIAFG---LEIRKHPKAKIKARVE 112
Query: 474 NFIR--QLPEGYETKVGER-GALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESET 530
+ QL +G+R LSGGQ+QR+A+ARA+ P +LLLDE ALD++
Sbjct: 113 ELLELVQL-----EGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRK 167
Query: 531 LVQNALDQA--SLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDL 578
+++ L + + TT+ V H AD I V+ NG + +IG+ +++
Sbjct: 168 ELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 7e-28
Identities = 72/210 (34%), Positives = 102/210 (48%), Gaps = 37/210 (17%)
Query: 1025 LVGKSGCGKSTVIGLIQRFYDV-----EQGSVRVDGMDV--RELDVHWYRKHTALVSQEP 1077
+G SGCGKST + R D +G + +DG+DV + +V R +V Q+P
Sbjct: 36 FIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKP 95
Query: 1078 VIYAGNIRDNIVFG-----------KLDASENEVVEAARAANAHEFISSLKDGYETECGE 1126
+ +I DN+ +G KLD E+VE S G E G+
Sbjct: 96 NPFPKSIYDNVAYGPKLHGLAKNKKKLD----EIVEK----------SLTSVGLWEELGD 141
Query: 1127 R----GVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTT 1182
R +LSGGQ+QR+ IARAI PT+LL+DE SALD + V++ + + T
Sbjct: 142 RLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTI 201
Query: 1183 IVVAHRLNTIKKL-DSIALVADGRVVERGT 1211
IVV H + KK+ D +A GR+VE T
Sbjct: 202 IVVTHSMKQAKKVSDRVAFFQSGRIVEYNT 231
|
Length = 251 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 1e-27
Identities = 73/233 (31%), Positives = 121/233 (51%), Gaps = 25/233 (10%)
Query: 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV---- 1046
KI+ R V+F Y D L+ SME++ + V +G SGCGKST + L R D+
Sbjct: 3 KIDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT 59
Query: 1047 -EQGSVRVDGMDV--RELDVHWYRKHTALVSQEPVIYAGNIRDNIVFG-KLDASENE--- 1099
+G +R+DG ++ + + V RK+ +V Q P + +I +N+ +G +++ ++
Sbjct: 60 RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFI 119
Query: 1100 ---VVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDE 1156
V E + A +L D + + E LSGGQ+QR+ IARA+ +P++LL+DE
Sbjct: 120 RQRVEETLKGA-------ALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDE 172
Query: 1157 ATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVE 1208
SALD S V+E + + T ++V H + ++ D A G +VE
Sbjct: 173 PASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE 225
|
Length = 250 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-27
Identities = 68/210 (32%), Positives = 111/210 (52%), Gaps = 13/210 (6%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELD----VHW 1065
+ S++V+ G ++G SG GKST++ I R + G V +DG D+ +
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99
Query: 1066 YRKHTALVSQEPVIYAG-NIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETEC 1124
RK ++V Q + + +N+ FG RAA A E + L+ G+E +
Sbjct: 100 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVG-LE-GWEHK- 156
Query: 1125 GERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRI--MMGRTT 1182
+LSGG +QR+ +ARA+ +P ILL+DEA SALD + +Q+ L R+ + +T
Sbjct: 157 --YPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTI 214
Query: 1183 IVVAHRLNTIKKL-DSIALVADGRVVERGT 1211
+ + H L+ +L D IA++ DGR+V+ GT
Sbjct: 215 VFITHDLDEALRLGDRIAIMKDGRLVQVGT 244
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 2e-27
Identities = 61/214 (28%), Positives = 90/214 (42%), Gaps = 60/214 (28%)
Query: 356 EFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVR 415
E E++ F Y R L + +L +KAG+ VALVG +GSGKST + + G+++
Sbjct: 1 EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIA-------GLLK 50
Query: 416 IDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNF 475
+I + IA
Sbjct: 51 PTSGEILID------------------------------------GKDIAKLPLEELRRR 74
Query: 476 IRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNA 535
I +P+ LSGGQ+QR+A+ARA++ NP +LLLDE TS LD S +
Sbjct: 75 IGYVPQ------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLEL 122
Query: 536 L-DQASLGRTTLVVAHKLSTVRNA-DLIAVVDNG 567
L + A GRT ++V H A D + V+ +G
Sbjct: 123 LRELAEEGRTVIIVTHDPELAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 3e-27
Identities = 76/231 (32%), Positives = 117/231 (50%), Gaps = 28/231 (12%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
IE+ V Y + L S+++K G L+G SGCGK+T++ LI F G +
Sbjct: 1 IELENVSKFYG---GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIYA----GNIRDNIVFG----KLDASENEVVEA 1103
+DG D+ L H ++ V Q YA + +NI FG KL +E +
Sbjct: 58 LLDGKDITNLPPH--KRPVNTVFQN---YALFPHLTVFENIAFGLRLKKLPKAEIK---- 108
Query: 1104 ARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDV 1163
R A A + + +GY + QLSGGQ+QR+AIARA++ P +LLLDE ALD+
Sbjct: 109 ERVAEALDLVQ--LEGYA---NRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDL 163
Query: 1164 QSEQVVQEALDRI--MMGRTTIVVAH-RLNTIKKLDSIALVADGRVVERGT 1211
+ + +Q L R+ +G T + V H + + D IA++ G++ + GT
Sbjct: 164 KLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGT 214
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 4e-27
Identities = 68/240 (28%), Positives = 120/240 (50%), Gaps = 22/240 (9%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
+E+ + YP+ L+ ++ + PG V ++G SG GKST++ I R + GS+
Sbjct: 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 1052 RVDGMDVREL---DVHWYRKHTALVSQE-PVIYAGNIRDNIVFGKLDASENEVV------ 1101
++G D+ +L + R+ ++ Q +I + +N++ G+L
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 1102 --EAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATS 1159
+ RA +A E + Y+ R QLSGGQ+QR+AIARA+ + P ++L DE +
Sbjct: 120 EEDKERALSALERVGLADKAYQ-----RADQLSGGQQQRVAIARALAQQPDLILADEPIA 174
Query: 1160 ALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLT 1216
+LD ++ + V + L RI G T I+ H+++ KK D I + G +V G ++L
Sbjct: 175 SLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD 234
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 4e-27
Identities = 75/229 (32%), Positives = 118/229 (51%), Gaps = 24/229 (10%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+E + S+ + V+ + +L + G+ + L+G SG GK+T + L+ F D G +
Sbjct: 15 VELRGISKSFDGKE---VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALF-GTSIKDNIMFGKLDATMDEVIAAATAANAH 473
+DG DI + + R + V Q +ALF ++ +N+ FG M + AA
Sbjct: 72 MLDGQDITHVPAE--NRHVNTVFQSYALFPHMTVFENVAFG---LRMQKTPAAEITPRVM 126
Query: 474 NFIR--QLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETL 531
+R QL E + K + LSGGQ+QR+AIARA++ P +LLLDE+ SALD +
Sbjct: 127 EALRMVQLEEFAQRKPHQ----LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQ 182
Query: 532 VQNALD--QASLGRTTLVVAHK----LSTVRNADLIAVVDNGCLVEIGT 574
+QN L Q LG T + V H L+ +D I V+ +G + + GT
Sbjct: 183 MQNELKALQRKLGITFVFVTHDQEEALTM---SDRIVVMRDGRIEQDGT 228
|
Length = 375 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 4e-27
Identities = 71/211 (33%), Positives = 108/211 (51%), Gaps = 18/211 (8%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
IEF +V +YP + L D +L ++ G+ + L G SG+GK+T + L+ G V
Sbjct: 2 IEFHNVSKAYPGGVAA--LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 415 RIDGVDIRRL---QLKWVRREMGLVSQEHALFGT-SIKDNIMFGKLDATMDEVIAAATAA 470
RI G D+ RL QL +RR +G+V Q+ L ++ +N+ + EV
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVAL-----PL-EVRGKKERE 113
Query: 471 ---NAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSE 527
+RQ+ G E K LSGG++QR+AIARAI+ +P +LL DE T LD +
Sbjct: 114 IQRRVGAALRQV--GLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPD 171
Query: 528 SETLVQNALDQASLGRTTLVVA-HKLSTVRN 557
+ + L + + TT++VA H LS V
Sbjct: 172 LSERILDLLKRLNKRGTTVIVATHDLSLVDR 202
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 6e-27
Identities = 71/204 (34%), Positives = 106/204 (51%), Gaps = 27/204 (13%)
Query: 376 FNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGL 435
F+L V G+ VA++G SG+GKST + L+ F + G ++++ L +R + +
Sbjct: 17 FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPY--QRPVSM 74
Query: 436 VSQEHALFG-TSIKDNIMFG-----KLDATMDE-VIAAATAANAHNFIRQLPEGYETKVG 488
+ QE+ LF +++ NI G KL+A E V+ AA +++ +LPE
Sbjct: 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQ------ 128
Query: 489 ERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALD----SESETLVQNALDQASLGRT 544
LSGGQ+QR+A+AR +++ ILLLDE SALD E LV+ + RT
Sbjct: 129 -----LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQ--RT 181
Query: 545 TLVVAHKLS-TVRNADLIAVVDNG 567
L+V H LS A IAVV G
Sbjct: 182 LLMVTHHLSDARAIASQIAVVSQG 205
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 8e-27
Identities = 62/239 (25%), Positives = 107/239 (44%), Gaps = 41/239 (17%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVI----GLIQRFYDVE 1047
IE+ + +Y +RP VL S+ V+ G L+G +G GKST++ GL++
Sbjct: 5 IEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---- 57
Query: 1048 QGSVRVDGMDVRELDVHWYRKHTALVSQ------------EPVIYAGNIRDNIVFGKLDA 1095
G +++ G VR+ R V Q + V+ G F +L+
Sbjct: 58 SGEIKIFGKPVRKRRK---RLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNK 114
Query: 1096 SENEVVEAA-RAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLL 1154
+ E V+ A + + GE LSGGQ+QR+ +ARA+ +NP +LLL
Sbjct: 115 KDKEKVDEALERVGMEDLRDR-------QIGE----LSGGQKQRVLLARALAQNPDLLLL 163
Query: 1155 DEATSALDVQSEQVVQEALDRI-MMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGT 1211
DE + +DV ++ + + L + G+T ++V H L + D + + ++ G
Sbjct: 164 DEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGP 221
|
Length = 254 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 8e-27
Identities = 70/220 (31%), Positives = 116/220 (52%), Gaps = 15/220 (6%)
Query: 370 SIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRL---QL 426
+ D +L + G+ ++G SGSGKST + ++ R + G + IDG +I + +L
Sbjct: 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVEL 65
Query: 427 KWVRR-EMGLVSQEHALF-GTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLP-EGY 483
+ VRR ++G+V Q+ ALF +I N G E A ++ + E Y
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPE---QERKEKALELLKLVGLEEY 122
Query: 484 ETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALD--QASL 541
E + + LSGG +QR+ +ARA+ P ILL+DEA SALD +Q+ L QA+L
Sbjct: 123 EHRYPDE---LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATL 179
Query: 542 GRTTLVVAHKL-STVRNADLIAVVDNGCLVEIGTHNDLIN 580
+T + + H L +R D I ++ G +V++GT ++++
Sbjct: 180 QKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILR 219
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-26
Identities = 82/227 (36%), Positives = 128/227 (56%), Gaps = 13/227 (5%)
Query: 370 SIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRL---QL 426
S+ +KD +L ++ G+ ++G SGSGKST + L+ R + G V IDGVDI ++ +L
Sbjct: 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAEL 100
Query: 427 KWVRRE-MGLVSQEHALF-GTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYE 484
+ VRR+ + +V Q AL ++ DN FG + + A A + +RQ+ G E
Sbjct: 101 REVRRKKIAMVFQSFALMPHMTVLDNTAFG---MELAGINAEERREKALDALRQV--GLE 155
Query: 485 TKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALD--QASLG 542
LSGG +QR+ +ARA+ NP ILL+DEA SALD T +Q+ L QA
Sbjct: 156 NYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQ 215
Query: 543 RTTLVVAHKL-STVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAK 588
RT + ++H L +R D IA++ NG +V++GT ++++N Y +
Sbjct: 216 RTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVR 262
|
Length = 400 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 2e-26
Identities = 71/225 (31%), Positives = 111/225 (49%), Gaps = 18/225 (8%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
+E+ V + + L ++++ G V L+G SGCGK+T + +I + G +
Sbjct: 1 VELENVTKRFGNVT---ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIYAG-NIRDNIVFG-KL-DASENEVVEAARAAN 1108
+ G DV D+ + A+V Q +Y + DNI FG KL ++E+ E R
Sbjct: 58 YIGGRDVT--DLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVA 115
Query: 1109 AHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQV 1168
I L D QLSGGQRQR+A+ RAI+R P + L+DE S LD +
Sbjct: 116 ELLQIEHLLDRKPK-------QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQ 168
Query: 1169 VQEALDRIMM--GRTTIVVAH-RLNTIKKLDSIALVADGRVVERG 1210
++ L R+ G TTI V H ++ + D IA++ DG++ + G
Sbjct: 169 MRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 2e-26
Identities = 73/232 (31%), Positives = 115/232 (49%), Gaps = 26/232 (11%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
I EH+ F YP + LKD + V G+ VA+VG +GSGKST L+ + G +
Sbjct: 6 IRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQ--EHALFGTSIKDNIMFG------KLDATMDEVIAA 466
+ G+ + + VRR++G+V Q ++ G +++D++ FG + ++ V A
Sbjct: 65 TVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQA 124
Query: 467 ATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALD- 525
+F+ + P LSGGQKQR+AIA + P I++LDEATS LD
Sbjct: 125 LRQVGMEDFLNREP-----------HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDP 173
Query: 526 ---SESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGT 574
E V+ +Q + T L + H L AD + V++ G ++E GT
Sbjct: 174 RGRREVLETVRQLKEQKGI--TVLSITHDLDEAAQADRVIVMNKGEILEEGT 223
|
Length = 279 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-26
Identities = 74/219 (33%), Positives = 121/219 (55%), Gaps = 17/219 (7%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRL---QLKWV 429
+ D +L V+ G+ ++G SGSGKST + L+ R + G + +DG DI +L +L+ +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 430 RRE-MGLVSQEHALF-GTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLP-EGYETK 486
RR+ + +V Q AL ++ +N+ FG + + A A + + EGY K
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEA---LELVGLEGYADK 160
Query: 487 -VGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALD--QASLGR 543
E LSGG +QR+ +ARA+ +P ILL+DEA SALD T +Q+ L QA L +
Sbjct: 161 YPNE----LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKK 216
Query: 544 TTLVVAHKLS-TVRNADLIAVVDNGCLVEIGTHNDLINR 581
T + + H L +R D IA++ +G +V++GT +++
Sbjct: 217 TIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN 255
|
Length = 386 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 2e-26
Identities = 65/237 (27%), Positives = 107/237 (45%), Gaps = 49/237 (20%)
Query: 993 EMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKST----VIGLIQRFYDVEQ 1048
E+ + +Y P VL S EVKPG + +VG +G GKST ++GL++
Sbjct: 1 EVEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----S 53
Query: 1049 GSVRVDGMDVRELDVHWYRKHTALVSQ------------EPVIYAGNIRDNIVFGKLDAS 1096
GS+RV G + + RK V Q V+ G +F +L +
Sbjct: 54 GSIRVFGKPLEKE-----RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKA 108
Query: 1097 ENEVVEAA-----RAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTI 1151
+ V+ A + A I +LSGGQ+QR+ +ARA++++P +
Sbjct: 109 DKAKVDEALERVGLSELADRQIG---------------ELSGGQQQRVLLARALVQDPDL 153
Query: 1152 LLLDEATSALDVQSEQVVQEALDRI-MMGRTTIVVAHRLNTIKKLDSIALVADGRVV 1207
LLLDE + +D ++++ + E L + G T +VV H L + + L+ + VV
Sbjct: 154 LLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 2e-26
Identities = 65/213 (30%), Positives = 106/213 (49%), Gaps = 24/213 (11%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
I FE+V +YP ++ L+D + + G+ V L G SG+GKST + L+ G +
Sbjct: 2 IRFENVSKAYPGGREA--LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 415 RIDGVDIRRL---QLKWVRREMGLVSQEHALFGT-SIKDNIMF-----GKLDATMDE-VI 464
++G D+ RL ++ ++RR++G+V Q+ L ++ +N+ GK + V
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119
Query: 465 AAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSAL 524
+ R LP + LSGG++QR+AIARAI+ P +LL DE T L
Sbjct: 120 EVLDLVGLKHKARALP-----------SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNL 168
Query: 525 DSE-SETLVQNALDQASLGRTTLVVAHKLSTVR 556
D + S +++ + LG T L+ H L V
Sbjct: 169 DPDLSWEIMRLFEEINRLGTTVLMATHDLELVN 201
|
Length = 223 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 2e-26
Identities = 69/218 (31%), Positives = 105/218 (48%), Gaps = 30/218 (13%)
Query: 373 LKDFNLKVK---AGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGV---DIRR-LQ 425
L DF LK+ + + GASG+GKST + + D G + ++G D R+ +
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69
Query: 426 LKWVRREMGLVSQEHALF-GTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPE--- 481
L +R++GLV Q++ALF ++++N+ FG + R +
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFG-------------LKRKRNREDRISVDELL 116
Query: 482 ---GYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQ 538
G + + A LSGG+KQR+A+ARA+ P +LLLDE SALD + L Q
Sbjct: 117 DLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQ 176
Query: 539 --ASLGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIG 573
+L + V H LS AD I V+++G L IG
Sbjct: 177 IKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 3e-26
Identities = 64/234 (27%), Positives = 111/234 (47%), Gaps = 48/234 (20%)
Query: 356 EFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVR 415
E E + SY P VL+D + +VK G+ +A+VG +G+GKST + + G +R
Sbjct: 1 EVEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR 57
Query: 416 IDGVDIRRLQLKWVRREMGLVSQEHAL---FGTSIKDNIMFG-----------------K 455
+ G + + R+ +G V Q ++ F S++D ++ G K
Sbjct: 58 VFGKPLEK-----ERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAK 112
Query: 456 LDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVIL 515
+D ++ V + A RQ+ E LSGGQ+QR+ +ARA++++P +L
Sbjct: 113 VDEALERVGLSELAD------RQIGE------------LSGGQQQRVLLARALVQDPDLL 154
Query: 516 LLDEATSALDSESETLVQNALDQ-ASLGRTTLVVAHKLSTV-RNADLIAVVDNG 567
LLDE + +D +++ + L + G T LVV H L V D + +++
Sbjct: 155 LLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT 208
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 3e-26
Identities = 76/241 (31%), Positives = 122/241 (50%), Gaps = 27/241 (11%)
Query: 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV--EQ 1048
KI++R ++F Y L+ ++++ +G SGCGKST++ R Y++ EQ
Sbjct: 13 KIQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQ 69
Query: 1049 ---GSVRVDGMDV--RELDVHWYRKHTALVSQEPVIYAGNIRDNIVFG-----KLDASE- 1097
G + +DG ++ + D+ R +V Q+P + +I DNI FG KL +E
Sbjct: 70 RAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEM 129
Query: 1098 NEVVEAA--RAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLD 1155
+E VE A +AA +E +KD + + G LSGGQ+QR+ IAR I P +LLLD
Sbjct: 130 DERVEWALTKAALWNE----VKD----KLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLD 181
Query: 1156 EATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQ 1214
E SALD S ++E + + T ++V H + + D A + G ++E G
Sbjct: 182 EPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDT 241
Query: 1215 L 1215
+
Sbjct: 242 I 242
|
Length = 260 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 64/210 (30%), Positives = 99/210 (47%), Gaps = 27/210 (12%)
Query: 1013 FSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTAL 1072
F + V G V ++G SG GKST++ LI F G + ++G+D + ++
Sbjct: 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP--AERPVSM 75
Query: 1073 VSQEPVIYAG-NIRDNIVFG-----KLDASENEVVEAARAANAHEFISSLKDGYETECGE 1126
+ QE ++A + NI G KL+A + E VEAA A G+
Sbjct: 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLA-------GFLKRLPG 128
Query: 1127 RGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-----MGRT 1181
+LSGGQRQR+A+AR ++R ILLLDE SALD + E L + T
Sbjct: 129 ---ELSGGQRQRVALARCLVREQPILLLDEPFSALD---PALRAEMLALVSQLCDERKMT 182
Query: 1182 TIVVAHRLNTIKKL-DSIALVADGRVVERG 1210
++V H ++ D + + +GR+ +G
Sbjct: 183 LLMVTHHPEDAARIADRVVFLDNGRIAAQG 212
|
Length = 231 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 2e-25
Identities = 79/238 (33%), Positives = 117/238 (49%), Gaps = 33/238 (13%)
Query: 992 IEMRRVDFAYPSRPDALV-LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
IE++ + +P + L S+ + G G++G SG GKST+I I G
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 1051 VRVDGMDVRELDVHWYRK----------HTALVSQEPVIYAGNIRDNIVFG-KLD-ASEN 1098
V VDG D+ L RK H L+S V DN+ +L +
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVF------DNVALPLELAGTPKA 115
Query: 1099 EVVEAARAANAHEF--ISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDE 1156
E+ AR E +S D Y QLSGGQ+QR+AIARA+ NP +LL DE
Sbjct: 116 EI--KARVTELLELVGLSDKADRYPA-------QLSGGQKQRVAIARALASNPKVLLCDE 166
Query: 1157 ATSALDVQSEQVVQEALDRI--MMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGT 1211
ATSALD + + + E L I +G T +++ H ++ +K++ D +A++ GR+VE+GT
Sbjct: 167 ATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGT 224
|
Length = 343 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 18/209 (8%)
Query: 1013 FSMEVK---PGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDG---MDVR-ELDVHW 1065
F++++ G+ G SG GKST++ I + G++ ++G D R ++++
Sbjct: 13 FTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPP 72
Query: 1066 YRKHTALVSQEPVIYAG-NIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETEC 1124
++ LV Q+ ++ N+R+N+ FG E + + L + Y
Sbjct: 73 QQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPA-- 130
Query: 1125 GERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTT 1182
QLSGG++QR+A+ARA+ P +LLLDE SALD + L +I +
Sbjct: 131 -----QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPV 185
Query: 1183 IVVAHRLNTIKKL-DSIALVADGRVVERG 1210
I V H L+ + L D I ++ DGR+ G
Sbjct: 186 IFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 70/232 (30%), Positives = 118/232 (50%), Gaps = 16/232 (6%)
Query: 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI 413
IE +V + L D +L + +G+ VAL+G SGSGK+T + L+ D G
Sbjct: 2 SIEVRNVSKRFGDFV---ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGT 58
Query: 414 VRIDGVDIRRLQLKWVRREMGLVSQEHALFG-TSIKDNIMFG-KLDATMDEVIAAATAAN 471
+ G D + ++ R +G V Q +ALF ++ DN+ FG ++ + A A
Sbjct: 59 ILFGGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAK 116
Query: 472 AHNFIR--QLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESE 529
H ++ QL + + + LSGGQ+QR+A+ARA+ P +LLLDE ALD++
Sbjct: 117 VHELLKLVQL-DWLADRYPAQ---LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVR 172
Query: 530 TLVQNALDQA--SLGRTTLVVAHKLS-TVRNADLIAVVDNGCLVEIGTHNDL 578
++ L + L TT+ V H + AD + V++ G + ++GT +++
Sbjct: 173 KELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 2e-25
Identities = 75/236 (31%), Positives = 117/236 (49%), Gaps = 27/236 (11%)
Query: 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD-VE-- 1047
+E+R ++ Y D L SM + +G SGCGKST++ R D V+
Sbjct: 25 ALEVRNLNLFYG---DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNC 81
Query: 1048 --QGSVRVDGMDV--RELDVHWYRKHTALVSQEPVIYAGNIRDNIVFG------KLDASE 1097
+G +R+DG ++ +++DV R+ +V Q P + +I +N+V+G
Sbjct: 82 RIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVL 141
Query: 1098 NEVVEAA--RAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLD 1155
+E VE + AA E +KD E LSGGQ+QR+ IARAI P +LLLD
Sbjct: 142 DEAVERSLRGAALWDE----VKD----RLHENAFGLSGGQQQRLVIARAIAIEPEVLLLD 193
Query: 1156 EATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERG 1210
E TSALD S ++E + + T ++V H + ++ D A + G++VE G
Sbjct: 194 EPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYG 249
|
Length = 272 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 2e-25
Identities = 72/244 (29%), Positives = 121/244 (49%), Gaps = 22/244 (9%)
Query: 971 PGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSG 1030
G +A + S + +M+ DF + P L LR S+ V G ++G +G
Sbjct: 644 GGGHEATPTSERS-----AKTPKMKTDDF-FELEPKVL-LRDVSVSVPRGKLTVVLGATG 696
Query: 1031 CGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVF 1090
GKST++ + +++ +G V W + A V Q+ I +R NI+F
Sbjct: 697 SGKSTLLQSLLSQFEISEGRV-------------WAERSIAYVPQQAWIMNATVRGNILF 743
Query: 1091 GKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPT 1150
+ + +A R + ++ L G ETE GE+GV LSGGQ+ R+++ARA+ N
Sbjct: 744 FD-EEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRD 802
Query: 1151 ILLLDEATSALDVQ-SEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVER 1209
+ LLD+ SALD E+VV+E + G+T ++ H+++ + + D + + DGRV
Sbjct: 803 VYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFS 862
Query: 1210 GTYA 1213
G+ A
Sbjct: 863 GSSA 866
|
Length = 1560 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 2e-25
Identities = 78/226 (34%), Positives = 121/226 (53%), Gaps = 20/226 (8%)
Query: 1008 LVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDV-----RELD 1062
LVLR S + P VG+VG++G GKST++ R +V G +RV+G ++ REL
Sbjct: 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLREL- 1382
Query: 1063 VHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYET 1122
R+ +++ Q+PV++ G +R N V L+AS EV A E ++S +G ++
Sbjct: 1383 ----RRQFSMIPQDPVLFDGTVRQN-VDPFLEASSAEVWAALELVGLRERVASESEGIDS 1437
Query: 1123 ECGERGVQLSGGQRQRIAIARAII-RNPTILLLDEATS----ALDVQSEQVVQEALDRIM 1177
E G S GQRQ + +ARA++ + +L+DEAT+ ALD Q + V A
Sbjct: 1438 RVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFS--- 1494
Query: 1178 MGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFF 1223
T I +AHRL+T+ + D I ++ G V E G+ +L R + F
Sbjct: 1495 -AYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIF 1539
|
Length = 1560 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 3e-25
Identities = 69/229 (30%), Positives = 117/229 (51%), Gaps = 18/229 (7%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVI-GLIQRFYDVEQGS 1050
I ++ F++ S+ + L +++V G+ V +VG +G GK+++I ++ S
Sbjct: 615 ISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDAS 674
Query: 1051 VRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFG-KLDASENEVVEAARAANA 1109
V + R A V Q I+ +RDNI+FG D E A
Sbjct: 675 VVI-------------RGTVAYVPQVSWIFNATVRDNILFGSPFDPERYE--RAIDVTAL 719
Query: 1110 HEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQ-SEQV 1168
+ L G TE GERGV +SGGQ+QR+++ARA+ N + + D+ SALD QV
Sbjct: 720 QHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQV 779
Query: 1169 VQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTH 1217
+ + + G+T ++V ++L+ + ++D I LV +G + E GTY +L++
Sbjct: 780 FDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSN 828
|
Length = 1622 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 3e-25
Identities = 67/209 (32%), Positives = 107/209 (51%), Gaps = 18/209 (8%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRL---QLKW 428
VL D NL++ G+ V L G SGSGK+T + L+ +G +++ G ++ +L
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 429 VRREMGLVSQEHALFG--TSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETK 486
+RR +G + Q H L G T+ ++ M +L + A + + G
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLS---YQEARERARAMLEAV--GLGDH 134
Query: 487 VGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSES-----ETLVQNALDQASL 541
+ LSGGQKQR+AIARA++ P ++L DE T+ALDS+S E + + A +Q
Sbjct: 135 LDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQ--- 191
Query: 542 GRTTLVVAHKLSTVRNADLIAVVDNGCLV 570
G T L+V H + AD I +++G L+
Sbjct: 192 GCTILIVTHDNRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 4e-25
Identities = 65/201 (32%), Positives = 98/201 (48%), Gaps = 15/201 (7%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
IE V YP L ++ + G V LVG SG GKST++ LI + G++
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 1052 RVDGMDVRELD---VHWYRKHTALVSQE-PVIYAGNIRDNIVFGK--LDASENEVVEAAR 1105
RV+G DV +L + + R+ +V Q+ ++ N+ +N+ F E+ +
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVP 118
Query: 1106 AANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQS 1165
AA +S E LSGG++QR+AIARAI+ +PTIL+ DE T LD +
Sbjct: 119 AALELVGLSHKHRALPAE-------LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDT 171
Query: 1166 EQVVQEALDRIMMGRTTIVVA 1186
+ L +I TT+VVA
Sbjct: 172 TWEIMNLLKKINKAGTTVVVA 192
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 4e-25
Identities = 72/241 (29%), Positives = 122/241 (50%), Gaps = 23/241 (9%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD-----A 409
IE E+ Y + +K+ +K+ + A++G SG GK+T + + R D
Sbjct: 4 IEIENFSAYYG---EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60
Query: 410 DDGIVRIDGVDIRR--LQLKWVRREMGLVSQEHALFGTSIKDNIMFG------KLDATMD 461
+G + G DI L + R+++G+V Q+ F SI DN+ FG K +D
Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLD 120
Query: 462 EVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEAT 521
++ + A L + ++++ + G LSGGQ+QR+ IARA+ P ++LLDE T
Sbjct: 121 RIVEESLKKAA------LWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPT 174
Query: 522 SALDSESETLVQNALDQASLGRTTLVVAHKLS-TVRNADLIAVVDNGCLVEIGTHNDLIN 580
SALD + ++ L++ S T ++V H + +R AD IA + G L+E G +++
Sbjct: 175 SALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVE 234
Query: 581 R 581
R
Sbjct: 235 R 235
|
Length = 250 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 4e-25
Identities = 67/240 (27%), Positives = 124/240 (51%), Gaps = 25/240 (10%)
Query: 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV---- 1046
+IE+ ++ + DA +L+ ++++ + L+G SGCGKST I + R D+
Sbjct: 3 RIEVENLNTYFD---DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGF 59
Query: 1047 -EQGSVRVDGMDVRE--LDVHWYRKHTALVSQEPVIYAGNIRDNIVFG-------KLDAS 1096
+G + +DG+D+ + +DV RK +V Q+P + +I DN+ +G D
Sbjct: 60 RHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFI 119
Query: 1097 ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDE 1156
E V E+ +AA +L D + + + + LSGGQ+QR+ IAR I +P ++L+DE
Sbjct: 120 EERVEESLKAA-------ALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDE 172
Query: 1157 ATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDS-IALVADGRVVERGTYAQL 1215
SALD S +++ + ++ T ++V H + ++ + +G ++E G Q+
Sbjct: 173 PCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232
|
Length = 250 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 4e-25
Identities = 72/208 (34%), Positives = 112/208 (53%), Gaps = 9/208 (4%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAD---DGIVRIDGVDIRRLQLKWV 429
L D N++++ K AL+GASG GKST + R D DG+V I+G D++ + +
Sbjct: 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77
Query: 430 RREMGLVSQEHALFGTSIKDNIMFG-KLDATMDEVIAAATAANAHNFIRQ--LPEGYETK 486
R+ +G+V Q+ +F SI +NI + KL + A + +++ L E + K
Sbjct: 78 RKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKN--KDEEEALVVDCLQKVGLFEEVKDK 135
Query: 487 VGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTL 546
+ + LSGGQ+QR+ IARA+ P +LLLDE TSALD S +++ L + S + +
Sbjct: 136 LKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMI 195
Query: 547 VVAHKLST-VRNADLIAVVDNGCLVEIG 573
+V H + R AD A G L+E G
Sbjct: 196 MVTHNMQQGKRVADYTAFFHLGELIEFG 223
|
Length = 246 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 108 bits (270), Expect = 4e-25
Identities = 77/216 (35%), Positives = 116/216 (53%), Gaps = 18/216 (8%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRL---QLKWV 429
L + +L V AG+ ++GASG+GKST I V G V +DG D+ L +L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 430 RREMGLVSQEHALFGT-SIKDNIMFG-KLDATMDEVIAAATAANAHNFIRQLPE--GYET 485
RR++G++ Q L + ++ N+ +LD T + I + +L G
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEI--------KRKVTELLALVGLGD 132
Query: 486 KVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGR 543
K + LSGGQKQR+AIARA+ NP +LL DEATSALD + + L + + LG
Sbjct: 133 KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGL 192
Query: 544 TTLVVAHKLSTV-RNADLIAVVDNGCLVEIGTHNDL 578
T L++ H++ V R D +AV+ NG L+E GT +++
Sbjct: 193 TILLITHEMDVVKRICDCVAVISNGELIEQGTVSEI 228
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 4e-25
Identities = 65/242 (26%), Positives = 103/242 (42%), Gaps = 61/242 (25%)
Query: 355 IEFEHVKFSYPSR----PDSIV--LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD 408
+E +++K +P V + + +K G+++ LVG SG GKST L+ +
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 409 ADDGIVRIDGVDIRRL----QLKWVRREMGLVS--QEHALFGTSIKDNIMFGKLDATMDE 462
G + +G DI +L + + V + V +E
Sbjct: 65 PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFL--------------------- 103
Query: 463 VIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATS 522
+ + +L SGGQ+QRI IARA+ NP +++ DE S
Sbjct: 104 ----------YRYPHEL---------------SGGQRQRIGIARALALNPKLIVADEPVS 138
Query: 523 ALDSESETLVQNAL--DQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLI 579
ALD + + N L Q LG T L ++H LS VR +D IAV+ G +VEIG ++
Sbjct: 139 ALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVF 198
Query: 580 NR 581
+
Sbjct: 199 SN 200
|
Length = 268 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 4e-25
Identities = 64/233 (27%), Positives = 107/233 (45%), Gaps = 37/233 (15%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKST----VIGLIQRF-YDVEQGSVRVDGMDVRELD- 1062
+ S E+K G +G+VG+SG GKS ++GL+ + + G + DG D+ L
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 1063 ---VHWYRKHTALVSQE------PVIYAGN-IRDNIVFGKLDASENEVVEAARAA----- 1107
K A++ Q+ PV+ G+ I + + S+ E E A
Sbjct: 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVG 139
Query: 1108 --NAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQS 1165
+ + S Y +LSGG RQR+ IA A+ NP +L+ DE T+ALDV
Sbjct: 140 IPDPERRLKS----YP-------HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTV 188
Query: 1166 EQVVQEALDRIM--MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
+ + + L + G I++ H L + ++ D +A++ GR+VE G ++
Sbjct: 189 QAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEI 241
|
Length = 316 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 5e-25
Identities = 105/442 (23%), Positives = 191/442 (43%), Gaps = 62/442 (14%)
Query: 2 RREKNKNNIGIIFR--FADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQ 59
R+ K NN+ I++R F+ + D+ ++ L + + G+ L++A + F +
Sbjct: 805 RKPKAPNNLRIVYREIFSYKKDVTIIALSIL--VAGGLYPVFALLYAKYVSTLFDFANLE 862
Query: 60 SQQNHHENFLDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQ 119
+ N K SLY + + +A+ + L+ Y + E+ ++ + E +L Q
Sbjct: 863 ANSN----------KYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQ 912
Query: 120 EVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLS 179
E+ FFD QD + I++D L++ L + IF +F+ + S YF
Sbjct: 913 EISFFD-QDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFC---- 967
Query: 180 LVAFPTLLLLIIPGMIYGKYLIYL---------------SKKAYKEYGKANA-------- 216
P I+ ++ G Y I++ KK + G A
Sbjct: 968 ----P-----IVAAVLTGTYFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIF 1018
Query: 217 -----IVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLGIKQGTAKGLAVG-STGLSF 270
++++A ++ TV + E + E +D + K ++ + G S
Sbjct: 1019 KDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQL 1078
Query: 271 AIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTE-ASIAASRIF 329
I +F W+GS L+ + +F+ +G S L LK +E A ++ + +
Sbjct: 1079 FINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTG-SYAGKLMSLKGDSENAKLSFEKYY 1137
Query: 330 DRIDRVPEIDGEDTKGLVL---DEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSV 386
I R ID D G+ + ++++G+IE V F Y SRP+ + KD + K+
Sbjct: 1138 PLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTT 1197
Query: 387 ALVGASGSGKSTAIALVQRFYD 408
A+VG +GSGKST ++L+ RFYD
Sbjct: 1198 AIVGETGSGKSTVMSLLMRFYD 1219
|
Length = 1466 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 6e-25
Identities = 76/259 (29%), Positives = 122/259 (47%), Gaps = 30/259 (11%)
Query: 968 SLIPGSSQAGDGTRGSKLQKISGK--IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGL 1025
LI ++ SG+ IE R ++ Y D L SM++ +
Sbjct: 14 GLITTTTATDTTDPSGDPAASSGETVIEARDLNVFYG---DEQALDDVSMDIPENQVTAM 70
Query: 1026 VGKSGCGKSTVIGLIQRFYD------VEQGSVRVDGMDVRELDVH--WYRKHTALVSQEP 1077
+G SGCGKST + I R D VE G + G +V + DV R+ +V Q+P
Sbjct: 71 IGPSGCGKSTFLRCINRMNDLIDAARVE-GELTFRGKNVYDADVDPVALRRRIGMVFQKP 129
Query: 1078 VIYAGNIRDNIVFG----KLDASENEVVEAA--RAANAHEFISSLKDGYETECGERGVQL 1131
+ +I DN+ +G D +E VE + RAA L D + + G+ L
Sbjct: 130 NPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAA--------LWDEVKDQLDSSGLDL 181
Query: 1132 SGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNT 1191
SGGQ+QR+ IARAI +P ++L+DE SALD + +++ ++ + T ++V H +
Sbjct: 182 SGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQ 241
Query: 1192 IKKL-DSIAL-VADGRVVE 1208
++ D A+ + G +VE
Sbjct: 242 AARISDKTAVFLTGGELVE 260
|
Length = 285 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 8e-25
Identities = 90/366 (24%), Positives = 167/366 (45%), Gaps = 35/366 (9%)
Query: 867 KVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDV 926
KV I ++E K +K ++L +G + C F+ + F T+ + + A
Sbjct: 521 KVEGI----RQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNILDA--- 573
Query: 927 FKTFFILVSTGKVIAEAGSM----TSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRG 982
+ F+ ++ ++ ++ S + + S ++ + L + L P S + R
Sbjct: 574 -EKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIE-----RR 627
Query: 983 SKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQR 1042
+ I + F + +R L + + G V +VG+ GCGKS+++ +
Sbjct: 628 TIKPGEGNSITVHNATFTW-ARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLA 686
Query: 1043 FYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVE 1102
D +G V + G A V Q+ I ++R+NI+FGK +E +
Sbjct: 687 EMDKVEGHVHMKG-------------SVAYVPQQAWIQNDSLRENILFGK-ALNEKYYQQ 732
Query: 1103 AARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALD 1162
A + L G TE GE+GV LSGGQ+QR+++ARA+ N I L D+ SA+D
Sbjct: 733 VLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 792
Query: 1163 VQSEQVVQEAL---DRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMR 1219
+ + E + + ++ +T I+V H ++ + ++D I +++ G++ E G+Y +L
Sbjct: 793 AHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRD 852
Query: 1220 GAFFNL 1225
GAF
Sbjct: 853 GAFAEF 858
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 9e-25
Identities = 70/241 (29%), Positives = 119/241 (49%), Gaps = 25/241 (10%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
IE +++ F Y + L D + VK G+ ++++G +GSGKST + L+ +A+ G +
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQ--EHALFGTSIKDNIMFG------KLDATMDEVIAA 466
IDG + + +R ++G+V Q ++ G +++D++ FG + + V A
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEA 124
Query: 467 ATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDS 526
+F + P A LSGGQKQR+AIA A+ P I++LDEATS LD
Sbjct: 125 LELVGMQDFKEREP-----------ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
Query: 527 ESE----TLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRI 582
E ++ D + T + + H L V +D + V+ NG + T +L +R
Sbjct: 174 EGRLELIKTIKGIRDDYQM--TVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRG 231
Query: 583 D 583
+
Sbjct: 232 N 232
|
Length = 279 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 9e-25
Identities = 69/232 (29%), Positives = 116/232 (50%), Gaps = 13/232 (5%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+E + SY S+ + ++D + + + G+ L+G +G+GK+T + ++ D G V
Sbjct: 2 LEVTDLTKSYGSKVQA--VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALFG-TSIKDNIM-FGKLDATMDEVIAAATAANA 472
IDGVD R +VRR++G++ E L+ + ++N+ F +L+ + I A A +
Sbjct: 60 TIDGVDTVR-DPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELS 118
Query: 473 HNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALD-SESETL 531
QL E + +VGE S G KQ++AIARA++ +P IL+LDE TS LD
Sbjct: 119 KRL--QLLEYLDRRVGE----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKF 172
Query: 532 VQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRI 582
+ GR + +H + V D + V+ G +V G+ L R
Sbjct: 173 HDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART 224
|
Length = 245 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-24
Identities = 72/233 (30%), Positives = 107/233 (45%), Gaps = 28/233 (12%)
Query: 994 MRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRV 1053
R++ L S+++K G V L+G SG GKST++ +I + G +R+
Sbjct: 2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRL 61
Query: 1054 DG---MDVRELDVHWYRKHTALVSQEPVIYA----GNIRDNIVFGKLDASENEVVEAARA 1106
+G DV L V + V Q YA + DNI FG L + EA
Sbjct: 62 NGRVLFDVSNLAVR--DRKVGFVFQH---YALFPHMTVADNIAFG-LKVRKERPSEAEIR 115
Query: 1107 ANAHEFI-----SSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSAL 1161
A E + L D Y QLSGGQRQR+A+ARA+ P +LLLDE AL
Sbjct: 116 ARVEELLRLVQLEGLADRYPA-------QLSGGQRQRVALARALAVEPKVLLLDEPFGAL 168
Query: 1162 DVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGT 1211
D + + ++ L ++ +G TT+ V H +L D + ++ GR+ + G
Sbjct: 169 DAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGP 221
|
Length = 345 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-24
Identities = 63/219 (28%), Positives = 115/219 (52%), Gaps = 13/219 (5%)
Query: 1001 YPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRE 1060
Y S+ A+ R S E + G GL+G++G GK+T++ +I + G V +DG+D
Sbjct: 11 YGSKVQAV--RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR 68
Query: 1061 LDVHWYRKHTALVSQEPVIYAG-NIRDNIV-FGKLDASENEVVEAARAANAHEFISSLKD 1118
D + R+ ++ E +YA R+N+ F +L+ + ++A A + L +
Sbjct: 69 -DPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRL--QLLE 125
Query: 1119 GYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM- 1177
+ GE S G +Q++AIARA++ +P+IL+LDE TS LD+++ + + + ++
Sbjct: 126 YLDRRVGE----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN 181
Query: 1178 MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
GR I +H + ++ L D + ++ G VV G+ L
Sbjct: 182 EGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEAL 220
|
Length = 245 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-24
Identities = 74/244 (30%), Positives = 124/244 (50%), Gaps = 24/244 (9%)
Query: 355 IEFEHVKFSY-PSRP-DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDG 412
I+ E++ Y P + L + N++++ G+ V L+G +GSGKST I + G
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 413 IVRIDGVDI--RRLQLKWVRREMGLVSQ--EHALFGTSIKDNIMFG--KLDATMDEVIAA 466
+ IDGVDI ++++L +R+++GLV Q E+ LF +I+ +I FG L + +E+
Sbjct: 63 KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEI--- 119
Query: 467 ATAANAHNFIRQLPE----GYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATS 522
N +++ YE + LSGGQK+R+AIA + P IL+LDE T+
Sbjct: 120 ------ENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTA 173
Query: 523 ALD--SESETLVQNALDQASLGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIGTHNDLI 579
LD E L + T ++V+H + V + AD I V++ G GT ++
Sbjct: 174 GLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233
Query: 580 NRID 583
++
Sbjct: 234 KEVE 237
|
Length = 287 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-24
Identities = 71/243 (29%), Positives = 126/243 (51%), Gaps = 28/243 (11%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
IE++ + YP AL + ++E+ G V ++G SG GKST++ + D G +
Sbjct: 4 IEVKNLSKTYPGGHQAL--KDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 1052 RVDGMDVREL---DVHWYRKHTALVSQEP-VIYAGNIRDNIVFGKLDA-----------S 1096
+G+ + +L ++ R+ ++ Q+ ++ ++ +N++ G+L S
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFS 121
Query: 1097 ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDE 1156
+ + A+A +A E + L Y+ R LSGGQ+QR+AIARA+++ P I+L DE
Sbjct: 122 KEDK---AQALDALERVGILDKAYQ-----RASTLSGGQQQRVAIARALVQQPKIILADE 173
Query: 1157 ATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYA 1213
++LD +S + V + L I G T IV H+++ KK D I + GR+V G +
Sbjct: 174 PVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPAS 233
Query: 1214 QLT 1216
+LT
Sbjct: 234 ELT 236
|
Length = 258 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-24
Identities = 74/234 (31%), Positives = 117/234 (50%), Gaps = 34/234 (14%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
+E+R + ++ + V+ + + G + L+G SGCGK+TV+ LI F + G +
Sbjct: 15 VELRGISKSFDGKE---VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIYA----GNIRDNIVFG----KLDASENE--VV 1101
+DG D+ + +H V Q YA + +N+ FG K A+E V+
Sbjct: 72 MLDGQDITHVPAE--NRHVNTVFQS---YALFPHMTVFENVAFGLRMQKTPAAEITPRVM 126
Query: 1102 EAARAANAHEFISSLKDGYETECGERGV-QLSGGQRQRIAIARAIIRNPTILLLDEATSA 1160
EA R EF +R QLSGGQ+QR+AIARA++ P +LLLDE+ SA
Sbjct: 127 EALRMVQLEEF------------AQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSA 174
Query: 1161 LDVQSEQVVQEALDRIM--MGRTTIVVAH-RLNTIKKLDSIALVADGRVVERGT 1211
LD + + +Q L + +G T + V H + + D I ++ DGR+ + GT
Sbjct: 175 LDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGT 228
|
Length = 375 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 2e-24
Identities = 60/205 (29%), Positives = 94/205 (45%), Gaps = 43/205 (20%)
Query: 1014 SMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALV 1073
S +K G ++GLVG+SGCGKST+ LI + G + +G D+ +L
Sbjct: 33 SFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS----------- 81
Query: 1074 SQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSG 1133
R V L+ + E HE SG
Sbjct: 82 --------KEERRERVLELLEKV--GLPEEFLYRYPHEL-------------------SG 112
Query: 1134 GQRQRIAIARAIIRNPTILLLDEATSALDVQSE-QVVQEALD-RIMMGRTTIVVAHRLNT 1191
GQRQRI IARA+ NP +++ DE SALDV + Q++ D + +G T + ++H L+
Sbjct: 113 GQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSV 172
Query: 1192 IKKL-DSIALVADGRVVERGTYAQL 1215
++ + D IA++ G++VE G ++
Sbjct: 173 VRYISDRIAVMYLGKIVEIGPTEEV 197
|
Length = 268 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-24
Identities = 63/253 (24%), Positives = 111/253 (43%), Gaps = 38/253 (15%)
Query: 355 IEFEHVKFSYPSRPDSI-VLKDFNLKVKAGKSVALVGASGSGKST---AIALVQRFYDA- 409
+E +++ S+P+ + + + ++K G+ + +VG SGSGKS AI + +A
Sbjct: 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNAR 61
Query: 410 -DDGIVRIDGVDIRRL----QLKWVRREMGLVSQE--HAL-----FGTSIKDNIMFGKLD 457
G + DG D+ L K +E+ ++ Q+ +L G I + +
Sbjct: 62 IVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG 121
Query: 458 ATMDEVIAAATAA-------NAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIK 510
+ E A + ++ P +E LSGG +QR+ IA A+
Sbjct: 122 LSKKEAKERAIELLELVGIPDPERRLKSYP--HE---------LSGGMRQRVMIAMALAL 170
Query: 511 NPVILLLDEATSALDSESETLVQNALD--QASLGRTTLVVAHKLSTVRN-ADLIAVVDNG 567
NP +L+ DE T+ALD + + + L Q G +++ H L V AD +AV+ G
Sbjct: 171 NPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAG 230
Query: 568 CLVEIGTHNDLIN 580
+VE G ++
Sbjct: 231 RIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-24
Identities = 75/210 (35%), Positives = 110/210 (52%), Gaps = 17/210 (8%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRR 431
LKD +L VK G+ V L+G SG GK+T + ++ G + G DI RL + +R
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KR 76
Query: 432 EMGLVSQEHALF-GTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGER 490
+ G+V Q +ALF ++ DNI +G + M A A + + G +
Sbjct: 77 DYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLV-----GLPGSERKY 131
Query: 491 GALLSGGQKQRIAIARAIIKNPVILLLDEATSALDS-ESETLVQNALD-QASLGRTTLVV 548
LSGGQ+QR+A+ARA+ +P +LLLDE SALD+ E L Q LG TT++V
Sbjct: 132 PGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMV 191
Query: 549 AHK----LSTVRNADLIAVVDNGCLVEIGT 574
H LS AD I V+++G + ++GT
Sbjct: 192 THDQEEALSM---ADRIVVMNHGVIEQVGT 218
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 2e-24
Identities = 69/231 (29%), Positives = 111/231 (48%), Gaps = 32/231 (13%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+ + ++FSY +P F+L G+ A+VG SGSGKST + L+ F G V
Sbjct: 1 VRLDKIRFSYGEQP-----MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALFG-TSIKDNIMFG-----KLDATMDEVIAAAT 468
I+GVD+ R + ++ QE+ LF +++ N+ G KL A + I A
Sbjct: 56 LINGVDVTAAPPA--DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVAL 113
Query: 469 A-ANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALD-- 525
A ++LP LSGG++QR+A+AR ++++ +LLLDE +ALD
Sbjct: 114 ARVGLAGLEKRLPGE-----------LSGGERQRVALARVLVRDKPVLLLDEPFAALDPA 162
Query: 526 --SESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIG 573
+E LV + + T L+V H+ + A + +DNG + G
Sbjct: 163 LRAEMLDLVLDLHAET--KMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-24
Identities = 67/197 (34%), Positives = 103/197 (52%), Gaps = 23/197 (11%)
Query: 1025 LVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAG-N 1083
L+G SGCGK+T++ L+ F + GS+ +DG DV V + +H +V Q ++
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTN--VPPHLRHINMVFQSYALFPHMT 58
Query: 1084 IRDNIVFG----KLDASE--NEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQ 1137
+ +N+ FG K+ +E V+EA R EF + QLSGGQ+Q
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADR-----------KPHQLSGGQQQ 107
Query: 1138 RIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAH-RLNTIKK 1194
R+A+ARA++ P ILLLDE SALD + +Q L I +G T + V H + +
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTM 167
Query: 1195 LDSIALVADGRVVERGT 1211
D IA++ G++ + GT
Sbjct: 168 SDRIAIMRKGKIAQIGT 184
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 3e-24
Identities = 70/220 (31%), Positives = 109/220 (49%), Gaps = 20/220 (9%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI-----VRIDGVDIRRLQLK 427
LK NL ++ + AL+G SG GKST + + R D + V +DG DI + +
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 428 WV--RREMGLVSQEHALFGTSIKDNIMFG------KLDATMDEVIAAATAANAHNFIRQL 479
R+ +G+V Q+ F SI DN+ +G K +DE++ + A L
Sbjct: 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAA------L 132
Query: 480 PEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQA 539
+ + ++ + LSGGQ+QR+ IARA+ P +LL+DE TSALD S ++ + +
Sbjct: 133 WDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL 192
Query: 540 SLGRTTLVVAHKL-STVRNADLIAVVDNGCLVEIGTHNDL 578
T ++V H + R +D A NG +VE G DL
Sbjct: 193 KKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232
|
Length = 250 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 3e-24
Identities = 72/213 (33%), Positives = 109/213 (51%), Gaps = 19/213 (8%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVE---QGSVRVDGMDVRELDVHWY 1066
L +M+++ L+G SGCGKST + R D G V ++G DV+ DV
Sbjct: 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77
Query: 1067 RKHTALVSQEPVIYAGNIRDNIVFG-KL-------DASENEVVEAARAANAHEFISSLKD 1118
RK+ +V Q+P ++ +I +NI + KL D E VV+ + E +KD
Sbjct: 78 RKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFE---EVKD 134
Query: 1119 GYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM 1178
+ + + LSGGQ+QR+ IARA+ P +LLLDE TSALD S V++E L +
Sbjct: 135 KLK----QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH 190
Query: 1179 GRTTIVVAHRLNTIKKL-DSIALVADGRVVERG 1210
+ I+V H + K++ D A G ++E G
Sbjct: 191 NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFG 223
|
Length = 246 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 3e-24
Identities = 68/193 (35%), Positives = 102/193 (52%), Gaps = 15/193 (7%)
Query: 388 LVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALF-GTS 446
L+G SG GK+T + L+ F D G + +DG D+ + R + +V Q +ALF +
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV--TNVPPHLRHINMVFQSYALFPHMT 58
Query: 447 IKDNIMFGKLDATMDEVIAAATAANAHNFIR--QLPEGYETKVGERGALLSGGQKQRIAI 504
+++N+ FG M +V A +R QL E + K + LSGGQ+QR+A+
Sbjct: 59 VEENVAFG---LKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQ----LSGGQQQRVAL 111
Query: 505 ARAIIKNPVILLLDEATSALDSESETLVQNALD--QASLGRTTLVVAHKLS-TVRNADLI 561
ARA++ P ILLLDE SALD + +Q L Q LG T + V H + +D I
Sbjct: 112 ARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRI 171
Query: 562 AVVDNGCLVEIGT 574
A++ G + +IGT
Sbjct: 172 AIMRKGKIAQIGT 184
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 3e-24
Identities = 65/227 (28%), Positives = 106/227 (46%), Gaps = 38/227 (16%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKST---AIA-LVQRFYDADDGIVRIDGVDIRRLQL- 426
+L +L V G+ VAL+G +G+GK+T I L+ G +R DG DI L
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR----SGSIRFDGRDITGLPPH 70
Query: 427 KWVRREMGLVSQEHALFGT-SIKDNIMFG-------KLDATMDEVIAAATAANAHNFIRQ 478
+ R +G V + +F ++++N++ G K A ++ V F R
Sbjct: 71 ERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYEL--------FPR- 121
Query: 479 LPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQ---NA 535
L E + + LSGG++Q +AIARA++ P +LLLDE + L + +V+ A
Sbjct: 122 LKE----RRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEA 174
Query: 536 LDQ-ASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580
+ + G T L+V AD V++ G +V GT +L+
Sbjct: 175 IRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 3e-24
Identities = 67/215 (31%), Positives = 106/215 (49%), Gaps = 17/215 (7%)
Query: 1001 YPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRE 1060
Y +P L S+ + G V ++G SGCGK+T++ LI F +GS++++G R
Sbjct: 13 YEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG---RR 68
Query: 1061 LDVHWYRKHTALVSQEPVIYAG-NIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDG 1119
++ + +V Q + N+ DN+ FG + +A R AH+ + G
Sbjct: 69 IEGPGAER--GVVFQNEALLPWLNVIDNVAFGLQLRG---IEKAQRREIAHQML--ALVG 121
Query: 1120 YETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRI--M 1177
E + QLSGG RQR+ IARA+ P +LLLDE ALD + + +QE L +
Sbjct: 122 LEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQE 181
Query: 1178 MGRTTIVVAHRLNTIKKLDSIALV---ADGRVVER 1209
G+ +++ H + L + +V GRVVER
Sbjct: 182 TGKQVLLITHDIEEALFLATRLVVLSPGPGRVVER 216
|
Length = 259 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-24
Identities = 66/218 (30%), Positives = 107/218 (49%), Gaps = 21/218 (9%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD-----ADDGIVRIDGVDI--RRL 424
+L D NL + + A +G SG GKST + R D G + IDG+D+
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 425 QLKWVRREMGLVSQEHALFGTSIKDNIMFG-------KLDATMDEVIAAATAANAHNFIR 477
+ +R ++G+V Q+ F SI DN+ +G K +DE++ + +
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVG----- 134
Query: 478 QLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALD 537
L E ++ + LSGGQ+QR+ IARAI P +LL+DE SALD + +++N +
Sbjct: 135 -LWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQ 193
Query: 538 QASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGT 574
+ T +VV H + + +D +A +G +VE T
Sbjct: 194 ELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNT 231
|
Length = 251 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 4e-24
Identities = 66/218 (30%), Positives = 109/218 (50%), Gaps = 33/218 (15%)
Query: 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI 413
IE E++ SY +RP VL+D +L V+ G+ AL+G +G+GKST + + G
Sbjct: 4 MIEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGE 60
Query: 414 VRIDGVDIRRLQLKWVRREMGLVSQEHAL---FGTSIKDNIM---------FGKLDATMD 461
++I G +R+ + R +G V Q+ ++ F ++KD ++ F +L+
Sbjct: 61 IKIFGKPVRKRR---KRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDK 117
Query: 462 EVIAAA-TAANAHNFI-RQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDE 519
E + A + RQ+ E LSGGQKQR+ +ARA+ +NP +LLLDE
Sbjct: 118 EKVDEALERVGMEDLRDRQIGE------------LSGGQKQRVLLARALAQNPDLLLLDE 165
Query: 520 ATSALDSESETLVQNALDQ-ASLGRTTLVVAHKLSTVR 556
+ +D + + + L + G+T L+V H L V
Sbjct: 166 PFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVM 203
|
Length = 254 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 5e-24
Identities = 75/221 (33%), Positives = 111/221 (50%), Gaps = 22/221 (9%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD-----ADDGIVRIDGVDI--RRLQ 425
LK+ NL + + A +G SG GKST + R Y+ +G + +DG +I +
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 426 LKWVRREMGLVSQEHALFGTSIKDNIMFG-----KLD-ATMDE-VIAAATAANAHNFIRQ 478
+ +R ++G+V Q+ F SI DNI FG KL A MDE V A T A N ++
Sbjct: 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKD 148
Query: 479 LPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQ 538
K+ + G LSGGQ+QR+ IAR I P +LLLDE SALD S ++ + +
Sbjct: 149 -------KLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITE 201
Query: 539 ASLGRTTLVVAHKL-STVRNADLIAVVDNGCLVEIGTHNDL 578
T ++V H + R +D A + G L+E G + +
Sbjct: 202 LKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTI 242
|
Length = 260 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 5e-24
Identities = 65/209 (31%), Positives = 106/209 (50%), Gaps = 13/209 (6%)
Query: 369 DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKW 428
D+ +L + +L V+AG+ +A+ G SG GKST + +V G + +G D+ L+ +
Sbjct: 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEA 74
Query: 429 VRREMGLVSQEHALFGTSIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYETK 486
R+++ +Q ALFG +++DN++F + D A A LP+ TK
Sbjct: 75 YRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARF-----ALPDSILTK 129
Query: 487 VGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQ--ASLGRT 544
LSGG+KQRIA+ R + P ILLLDE TSALD ++ ++ + +
Sbjct: 130 ---NITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVA 186
Query: 545 TLVVAH-KLSTVRNADLIAVVDNGCLVEI 572
L + H K +R+AD + + G E+
Sbjct: 187 VLWITHDKDQAIRHADKVITLQPGHAGEM 215
|
Length = 223 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 6e-24
Identities = 65/213 (30%), Positives = 110/213 (51%), Gaps = 23/213 (10%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK 1068
L+ S+EV+ G ++G +G GKS ++ I F + G + ++G D+ L ++
Sbjct: 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--KR 71
Query: 1069 HTALVSQEPVIYAG-NIRDNIVFG----KLDASE--NEVVEAARAANAHEFISSLKDGYE 1121
+ V Q ++ + NI +G K+D E +V+E A I L +
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLG----IDHLLNRKP 127
Query: 1122 TECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MG 1179
LSGG++QR+AIARA++ NP ILLLDE SALDV++++ ++E L +I G
Sbjct: 128 E-------TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFG 180
Query: 1180 RTTIVVAHRLNTIKKL-DSIALVADGRVVERGT 1211
T + V H L D +A++ +G++++ G
Sbjct: 181 VTVLHVTHDFEEAWALADKVAIMLNGKLIQVGK 213
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 6e-24
Identities = 41/129 (31%), Positives = 64/129 (49%), Gaps = 13/129 (10%)
Query: 1034 STVIGLIQRFYDVEQGSVRVDGMDVREL-DVHWYRKHTALVSQEPVIYAGN-IRDNIVFG 1091
ST++ LI G++ +DG D L RK +V Q+P ++ +R+N+ FG
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1092 KL-DASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPT 1150
++ EA +F+ E LSGGQ+QR+AIARA+++ P
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDR----------EPVGTLSGGQKQRVAIARALLKKPK 110
Query: 1151 ILLLDEATS 1159
+LLLDE T+
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 7e-24
Identities = 68/211 (32%), Positives = 105/211 (49%), Gaps = 24/211 (11%)
Query: 1014 SMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD------VEQGSVRVDGMDV--RELDVHW 1065
M+ + L+G SG GKST + + R D V G + G+D+ +E++V+
Sbjct: 40 DMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVT-GQILYRGIDINRKEINVYE 98
Query: 1066 YRKHTALVSQEPVIYAGNIRDNIVF-----GKLDASE-NEVVEAA-RAANAHEFISSLKD 1118
RKH +V Q P +A +I +NI F G D +E+VE + + A +L D
Sbjct: 99 MRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQA-------ALWD 151
Query: 1119 GYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM 1178
+ + + + LSGGQ+QR+ IARAI P ILL+DE SALD S ++E + +
Sbjct: 152 QVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK 211
Query: 1179 GRTTIVVAHRLNTIKKL-DSIALVADGRVVE 1208
T I+V H + + D A G ++E
Sbjct: 212 NYTIIIVTHNMQQAARASDYTAFFYLGDLIE 242
|
Length = 267 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 8e-24
Identities = 61/198 (30%), Positives = 99/198 (50%), Gaps = 14/198 (7%)
Query: 358 EHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRID 417
H+ SY +P L+D +L + +G+ V ++G SG GK+T + L+ F G ++++
Sbjct: 7 SHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLN 65
Query: 418 GVDIRRLQLKWVRREMGLVSQEHALFG-TSIKDNIMFGKLDATMDEVIAAATAANAHNFI 476
G RR++ R G+V Q AL ++ DN+ FG +++ A +
Sbjct: 66 G---RRIEGPGAER--GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALV 120
Query: 477 RQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSES-ETLVQNA 535
EG E K LSGG +QR+ IARA+ P +LLLDE ALD+ + E + +
Sbjct: 121 GL--EGAEHK---YIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELL 175
Query: 536 LDQASL-GRTTLVVAHKL 552
LD G+ L++ H +
Sbjct: 176 LDLWQETGKQVLLITHDI 193
|
Length = 259 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 8e-24
Identities = 61/233 (26%), Positives = 109/233 (46%), Gaps = 36/233 (15%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
++ E++ Y + L +L + G L+G +G+GK+T + ++ G +
Sbjct: 1 LQLENLTKRYGKK---RALDGVSLTLGPGMY-GLLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALFGTS-------------IKDNIMFGKLDATMD 461
RIDG D+ + Q + +RR +G + QE FG I ++ A +D
Sbjct: 57 RIDGQDVLK-QPQKLRRRIGYLPQE---FGVYPNFTVREFLDYIAWLKGIPSKEVKARVD 112
Query: 462 EVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEAT 521
EV+ L + + K+G LSGG ++R+ IA+A++ +P IL++DE T
Sbjct: 113 EVLELV----------NLGDRAKKKIGS----LSGGMRRRVGIAQALVGDPSILIVDEPT 158
Query: 522 SALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIG 573
+ LD E +N L + R ++ H + V + + +AV++ G LV G
Sbjct: 159 AGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 9e-24
Identities = 65/229 (28%), Positives = 106/229 (46%), Gaps = 27/229 (11%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
I V AYP +AL R S + G V L G SG GKST++ LI +G +
Sbjct: 2 IRFENVSKAYPGGREAL--RDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 1052 RVDGMDV---RELDVHWYRKHTALVSQE-PVIYAGNIRDNIVFGKLDASENEVVEAARAA 1107
V+G D+ + ++ + R+ +V Q+ ++ + +N+ V+
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPL------RVIGKPPRE 113
Query: 1108 NAHEFISSLKDGYETECGERG----VQLSGGQRQRIAIARAIIRNPTILLLDEATSALDV 1163
L + QLSGG++QR+AIARAI+ P +LL DE T LD
Sbjct: 114 IRRRVSEVLD---LVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDP 170
Query: 1164 Q-SEQVVQ--EALDRIMMGRTTIVVAHRLNTIKKLDS--IALVADGRVV 1207
S ++++ E ++R +G T ++ H L + ++ +AL DGR+V
Sbjct: 171 DLSWEIMRLFEEINR--LGTTVLMATHDLELVNRMRHRVLAL-EDGRLV 216
|
Length = 223 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 1e-23
Identities = 65/239 (27%), Positives = 119/239 (49%), Gaps = 23/239 (9%)
Query: 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVE--- 1047
K+E + ++ Y + L ++ + L+G SGCGKST + + R D+
Sbjct: 4 KMESKNLNLWYGEKQ---ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNV 60
Query: 1048 --QGSVRVDGMDV--RELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKL-----DASE- 1097
+G V +DG ++ +++DV RK +V Q+P + +I DN+ +G D E
Sbjct: 61 KIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKEL 120
Query: 1098 NEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEA 1157
+++VE A ++L D + + + ++LSGGQ+QR+ IAR I P ++L+DE
Sbjct: 121 DKIVEWALKK------AALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEP 174
Query: 1158 TSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
TSALD S +++ + + T ++V H + ++ D A G ++E ++
Sbjct: 175 TSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233
|
Length = 251 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-23
Identities = 72/235 (30%), Positives = 108/235 (45%), Gaps = 19/235 (8%)
Query: 989 SGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFY--DV 1046
G I + + AY + VL S+E++ G + L+GKSGCGK+T++ I F
Sbjct: 3 CGGIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAG 59
Query: 1047 EQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAG-NIRDNIVFGKLDASENEVVEAAR 1105
G + + D+ H ++ AL+ Q ++ + DN+ FG + A R
Sbjct: 60 LTGRIAIADRDLTHAPPH--KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAER 117
Query: 1106 AANAHEFISSLKDGYETECGER-GVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQ 1164
A+A LK + QLSGG +QRIAIARAI P +LLLDE SALD
Sbjct: 118 VADA------LKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDAN 171
Query: 1165 SEQVVQE---ALDRIMMGRTTIVVAH-RLNTIKKLDSIALVADGRVVERGTYAQL 1215
++E AL + T + V H + + + D ++ DGR+ G L
Sbjct: 172 IRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-23
Identities = 62/250 (24%), Positives = 112/250 (44%), Gaps = 33/250 (13%)
Query: 355 IEFEHVKFSYPSRPDSI-VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAD--- 410
+E E++ + + + ++D + +V+ G+ + +VG SGSGKST +
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 411 -DGIVRIDGVDIRRL---QLKWVR-REMGLVSQEH-ALFG--TSIKDNIMFGKLDATMDE 462
G V +DG D+ L +++ +R + + ++ Q+ +I D I E
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIR---------E 116
Query: 463 VIAAATAANAHNFIRQLPEGYETKVG-----ERGAL---LSGGQKQRIAIARAIIKNPVI 514
+ + ++ E E +VG R LSGG +QR+ IA A+ P +
Sbjct: 117 ALRLHGKGSRAEARKRAVELLE-QVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKL 175
Query: 515 LLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVE 571
L+ DE T+ALD ++ + + L LG L + H L V AD + V+ G +VE
Sbjct: 176 LIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235
Query: 572 IGTHNDLINR 581
G ++++
Sbjct: 236 TGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-23
Identities = 76/272 (27%), Positives = 124/272 (45%), Gaps = 33/272 (12%)
Query: 321 ASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKV 380
S + + + V + E T +E ++ Y D L D ++++
Sbjct: 2 ISHGITLMALPLLDVLNLSDEQTA----------LEVRNLNLFYG---DKQALFDISMRI 48
Query: 381 KAGKSVALVGASGSGKSTAIALVQRFYDADD-----GIVRIDGVDI--RRLQLKWVRREM 433
+ A +G SG GKST + R D D G +R+DG +I +++ + +RR +
Sbjct: 49 PKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRV 108
Query: 434 GLVSQEHALFGTSIKDNIMFG------KLDATMDEVIAAATAANAHNFIRQLPEGYETKV 487
G+V Q F SI +N+++G +DE + + A L + + ++
Sbjct: 109 GMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAA------LWDEVKDRL 162
Query: 488 GERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLV 547
E LSGGQ+QR+ IARAI P +LLLDE TSALD S ++ + + T ++
Sbjct: 163 HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVI 222
Query: 548 VAHKL-STVRNADLIAVVDNGCLVEIGTHNDL 578
V H + R +D A + G LVE G + L
Sbjct: 223 VTHNMQQAARVSDYTAFMYMGKLVEYGDTDTL 254
|
Length = 272 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 68/224 (30%), Positives = 114/224 (50%), Gaps = 20/224 (8%)
Query: 369 DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD-----ADDGIVRIDGVDIRR 423
D+ +LK+ NL + AL+G SG GKST I + R D +G + +DGVDI
Sbjct: 15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74
Query: 424 LQLKWV--RREMGLVSQEHALFGTSIKDNIMFG------KLDATMDEVIAAATAANAHNF 475
+ V R+++G+V Q+ F SI DN+ +G + ++E + + A A
Sbjct: 75 PAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAA--- 131
Query: 476 IRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNA 535
L + + K+ + LSGGQ+QR+ IAR I +P ++L+DE SALD S T +++
Sbjct: 132 ---LWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDL 188
Query: 536 LDQASLGRTTLVVAHKL-STVRNADLIAVVDNGCLVEIGTHNDL 578
+ + T ++V H + R + + NG ++E G + +
Sbjct: 189 IHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232
|
Length = 250 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 2e-23
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 16/175 (9%)
Query: 1006 DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW 1065
DA +L S+ V+ G + + G SGCGKST++ ++ G++ +G DV L
Sbjct: 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEA 74
Query: 1066 YRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAA-----RAANAHEFISSLKDGY 1120
YR+ + +Q P ++ + DN++F + AA R A ++
Sbjct: 75 YRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTK----- 129
Query: 1121 ETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDR 1175
+LSGG++QRIA+ R + P ILLLDE TSALD +++ ++E + R
Sbjct: 130 ------NITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHR 178
|
Length = 223 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 2e-23
Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 13/129 (10%)
Query: 397 STAIALVQRFYDADDGIVRIDGVDIRRL-QLKWVRREMGLVSQEHALF-GTSIKDNIMFG 454
ST + L+ G + +DG D L K +R+ +G+V Q+ LF ++++N+ FG
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 455 KL-DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPV 513
A +F+ + E LSGGQKQR+AIARA++K P
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDR----------EPVGTLSGGQKQRVAIARALLKKPK 110
Query: 514 ILLLDEATS 522
+LLLDE T+
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 72/212 (33%), Positives = 106/212 (50%), Gaps = 43/212 (20%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIR--------- 422
VLK +L+ AG ++++G+SGSGKST + + G +R++G +IR
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80
Query: 423 ----RLQLKWVRREMGLVSQEHALFG-TSIKDNIMFGK---LDATMDEVIAAATAANAHN 474
+ QL+ +R +G+V Q L+ ++ +N++ L + E I A
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERA------- 133
Query: 475 FIRQLPEGYETKVG--ERG----ALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSES 528
E Y KVG E+ A LSGGQ+QR+AIARA+ P ++L DE TSALD E
Sbjct: 134 ------EKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPE- 186
Query: 529 ETLVQNAL----DQASLGRTTLVVAHKLSTVR 556
LV L D A GRT +VV H++ R
Sbjct: 187 --LVGEVLKVMQDLAEEGRTMVVVTHEMGFAR 216
|
Length = 256 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 3e-23
Identities = 70/239 (29%), Positives = 112/239 (46%), Gaps = 30/239 (12%)
Query: 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
I + + F YP L+ S V G V +VG +G GKST+ L+ E G+
Sbjct: 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGT 63
Query: 1051 VRVDGMDVRELDVHWYRKHTALVSQEP--VIYAGNIRDNIVFGKLDASEN------EVVE 1102
+ V GM + E V R+ +V Q P ++D++ FG EN E+VE
Sbjct: 64 ITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFG----LENIGVPREEMVE 119
Query: 1103 AARAA----NAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEAT 1158
A +F++ E +LSGGQ+QR+AIA + P I++LDEAT
Sbjct: 120 RVDQALRQVGMEDFLN-----REPH------RLSGGQKQRVAIAGVLALQPDIIILDEAT 168
Query: 1159 SALDVQSEQVVQEALDRI--MMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQL 1215
S LD + + V E + ++ G T + + H L+ + D + ++ G ++E GT ++
Sbjct: 169 SMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEI 227
|
Length = 279 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 3e-23
Identities = 74/237 (31%), Positives = 119/237 (50%), Gaps = 17/237 (7%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+E +K+SYP + LK N K + G+ VAL+G +G+GKST G V
Sbjct: 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 415 RIDGVDIR--RLQLKWVRREMGLVSQ--EHALFGTSIKDNIMFGKLDA--TMDEVIAAAT 468
I G I+ + L VR+ +G+V Q + LF ++++++ FG L+ + +EV
Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVK 119
Query: 469 AANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSES 528
A EG+E K LSGGQK+R+AIA + P I++LDE TS LD
Sbjct: 120 EA----LKAVGMEGFENKPPHH---LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMG 172
Query: 529 ETLVQNAL-DQASLGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIGTHNDLINRID 583
+ + L D G T ++ H + V AD + V+ +G +++ GT ++ + I+
Sbjct: 173 ASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDIE 229
|
Length = 275 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 98.4 bits (246), Expect = 3e-23
Identities = 63/224 (28%), Positives = 105/224 (46%), Gaps = 48/224 (21%)
Query: 354 EIEFEHVKFSYPSRPDS---IVLKDFNLKVKAGKSVALVGASGSGKST---AIALVQRFY 407
+ F ++ + S P +LK+ + K K G+ A++G SG+GKST A+A +R
Sbjct: 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALA-GRRTG 61
Query: 408 DADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGT-SIKDNIMFGKLDATMDEVIAA 466
G V I+G + + + R+ +G V Q+ L T ++++ +MF
Sbjct: 62 LGVSGEVLINGRPLDK---RSFRKIIGYVPQDDILHPTLTVRETLMF------------- 105
Query: 467 ATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDS 526
AA +R LSGG+++R++IA ++ NP +L LDE TS LDS
Sbjct: 106 --AAK----LRG---------------LSGGERKRVSIALELVSNPSLLFLDEPTSGLDS 144
Query: 527 ESETLVQNALDQ-ASLGRTTLVVAHKLST--VRNADLIAVVDNG 567
S V + L + A GRT + H+ S+ D + ++ G
Sbjct: 145 SSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQG 188
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99 bits (249), Expect = 3e-23
Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 24/239 (10%)
Query: 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQG- 1049
K + +D Y + L+ ++ + L+G SGCGKST++ + R D+ +G
Sbjct: 3 KFNIENLDLFYG---ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGV 59
Query: 1050 ----SVRVDGMDV-RELDVHWYRKHTALVSQEPVIYAGNIRDNIVFG------KLDASEN 1098
+ +DG D+ +DV R +V Q+P + +I +N+ +G K +
Sbjct: 60 KITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLD 119
Query: 1099 EVVEAA-RAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEA 1157
EVVE + R A +L D + LSGGQ+QR+ IAR I P ++L+DE
Sbjct: 120 EVVERSLRGA-------ALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEP 172
Query: 1158 TSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
TSALD + ++E ++ + T ++V H + +++ D A G +VE +
Sbjct: 173 TSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI 231
|
Length = 249 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 4e-23
Identities = 68/215 (31%), Positives = 114/215 (53%), Gaps = 23/215 (10%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDV--------REL 1061
+ S++V+ G ++G SG GKST++ L+ R + +G + VDG D+ REL
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 1062 DVHWYRKHTALVSQEPVIYAG-NIRDNIVFGKLDASENEVVEAARAANAHEFISSLK-DG 1119
RK ++V Q + + +N+ FG L+ V +A R A E + + +G
Sbjct: 104 R----RKKISMVFQSFALLPHRTVLENVAFG-LEVQG--VPKAEREERALEALELVGLEG 156
Query: 1120 YETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRI--M 1177
Y + +LSGG +QR+ +ARA+ +P ILL+DEA SALD +Q+ L +
Sbjct: 157 YADK---YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAK 213
Query: 1178 MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGT 1211
+ +T + + H L+ ++ D IA++ DG +V+ GT
Sbjct: 214 LKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGT 248
|
Length = 386 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 4e-23
Identities = 68/219 (31%), Positives = 114/219 (52%), Gaps = 24/219 (10%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVREL---DVHWY 1066
L S+ V G G++G SG GKST+I + GSV VDG D+ L ++
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 1067 RKHTALVSQEPVIYAGNIRDNIVFGKL-------DASENEVVEAARAANAHEFISSLKDG 1119
R+ ++ Q + + VFG + + ++E+ A + D
Sbjct: 81 RRQIGMIFQ----HFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDS 136
Query: 1120 YETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRI--M 1177
Y + LSGGQ+QR+AIARA+ NP +LL DEATSALD + Q + E L I
Sbjct: 137 YPS-------NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRR 189
Query: 1178 MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
+G T +++ H ++ +K++ D +A++++G ++E+GT +++
Sbjct: 190 LGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEI 228
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 4e-23
Identities = 63/196 (32%), Positives = 93/196 (47%), Gaps = 23/196 (11%)
Query: 364 YPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDG--VDI 421
YP P+ VLK N + G+ +AL+GA+G+GKST + + G V IDG +D
Sbjct: 1 YPGGPE--VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 422 RRLQLKWVRREMGLVSQ--EHALFGTSIKDNIMFGKLDATMDE------VIAAATAANAH 473
R L R+ +GLV Q + LF + ++ FG L+ + E V A TA A
Sbjct: 59 SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGAS 118
Query: 474 NFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQ 533
+ LSGG+K+R+AIA A+ P +LLLDE T+ LD +
Sbjct: 119 GLRERPTH-----------CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQML 167
Query: 534 NALDQASLGRTTLVVA 549
L + T+V++
Sbjct: 168 AILRRLRAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 4e-23
Identities = 67/245 (27%), Positives = 120/245 (48%), Gaps = 35/245 (14%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFY---DADD 411
+EF+HV F+YP L D + + G AL+G +GSGKST L+ D +
Sbjct: 6 VEFKHVSFTYPDSKKP-ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 412 GIVRIDGVDIRRLQLKWVRREMGLVSQ--EHALFGTSIKDNIMFG---------KLDATM 460
+ +DG+ + + +R ++G+V Q ++ G ++ D++ FG ++ +
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIV 124
Query: 461 DEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEA 520
+V+A + +I P A LSGGQKQR+AIA + P I++LDE+
Sbjct: 125 RDVLADVGMLD---YIDSEP-----------ANLSGGQKQRVAIAGILAVEPKIIILDES 170
Query: 521 TSALDSESET----LVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHN 576
TS LD + L++ + +L T + + H + AD + V+D+G L+ G+
Sbjct: 171 TSMLDPAGKEQILKLIRKLKKKNNL--TVISITHDIDEANMADQVLVLDDGKLLAQGSPV 228
Query: 577 DLINR 581
++ ++
Sbjct: 229 EIFSK 233
|
Length = 282 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 4e-23
Identities = 64/227 (28%), Positives = 111/227 (48%), Gaps = 12/227 (5%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+E + F Y +R L D + V+ G+ VAL+G +G+GKST +L+ R Y A +G +
Sbjct: 2 LEVAGLSFRYGARR---ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHAL-FGTSIKDNIMFGKLDATMDEVIAAATAANAH 473
+ G D+RR + R +G+V Q+ L S++ N+ + A + + A A
Sbjct: 59 SVAGHDLRRAPRAALAR-LGVVFQQPTLDLDLSVRQNLRY---HAALHGLSRAEARARIA 114
Query: 474 NFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQ 533
+ +L G + ++ L+GG ++R+ IARA++ P +LLLDE T LD S +
Sbjct: 115 ELLARL--GLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIT 172
Query: 534 NALDQ--ASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDL 578
+ G + L H + + D + V+ G ++ G +L
Sbjct: 173 AHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAEL 219
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 5e-23
Identities = 73/235 (31%), Positives = 123/235 (52%), Gaps = 18/235 (7%)
Query: 985 LQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVI-GLIQRF 1043
LQ + I ++ F++ S+ L ++E+ G+ V +VG +G GK+++I ++
Sbjct: 608 LQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGEL 667
Query: 1044 YDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEA 1103
E SV + R A V Q I+ +R+NI+FG E+E
Sbjct: 668 SHAETSSVVI-------------RGSVAYVPQVSWIFNATVRENILFGS--DFESERYWR 712
Query: 1104 ARAANAHEFISSLKDGYE-TECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALD 1162
A A + L G + TE GERGV +SGGQ+QR+++ARA+ N I + D+ SALD
Sbjct: 713 AIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALD 772
Query: 1163 VQ-SEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLT 1216
+ QV + + G+T ++V ++L+ + +D I LV++G + E GT+A+L+
Sbjct: 773 AHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELS 827
|
Length = 1495 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 5e-23
Identities = 69/208 (33%), Positives = 109/208 (52%), Gaps = 29/208 (13%)
Query: 1012 QFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071
+F + V G V ++G SG GKST++ LI F + GS++V+ L Y++ +
Sbjct: 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAP--YQRPVS 73
Query: 1072 LVSQEPVIYAG-NIRDNIVFG-----KLDASENE-VVEAARAANAHEFISSLKDGYETEC 1124
++ QE ++A +R NI G KL+A + E VV+AA+ +++ L +
Sbjct: 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE------ 127
Query: 1125 GERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM-----G 1179
QLSGGQRQR+A+AR ++R ILLLDE SALD + +E L +
Sbjct: 128 -----QLSGGQRQRVALARCLVRPNPILLLDEPFSALD---PLLREEMLALVKQLCSERQ 179
Query: 1180 RTTIVVAHRL-NTIKKLDSIALVADGRV 1206
RT ++V H L + IA+V+ G++
Sbjct: 180 RTLLMVTHHLSDARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 5e-23
Identities = 67/221 (30%), Positives = 106/221 (47%), Gaps = 27/221 (12%)
Query: 1005 PDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV-----RVDGMDVR 1059
D + L S+++ G V L+G SG GK+T++ LI + G++ + V+
Sbjct: 13 GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQ 72
Query: 1060 ELDVHWYRKHTALVSQEPVIYAGNIRDNIVFG-KLDASENEVVEAARAANAHEFI----- 1113
E +V + +H AL V DN+ FG ++ EA A HE +
Sbjct: 73 ERNVGFVFQHYALFRHMTV------FDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQL 126
Query: 1114 SSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEAL 1173
L D Y QLSGGQRQR+A+ARA+ P +LLLDE ALD + + ++ L
Sbjct: 127 DWLADRYPA-------QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWL 179
Query: 1174 DRIM--MGRTTIVVAH-RLNTIKKLDSIALVADGRVVERGT 1211
R+ + TT+ V H + ++ D + ++ GR+ + GT
Sbjct: 180 RRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGT 220
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 5e-23
Identities = 60/214 (28%), Positives = 100/214 (46%), Gaps = 25/214 (11%)
Query: 1008 LVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRE--LDVHW 1065
+ S VKPG GL+G +G GK+T + ++ + + G VDG DV + +
Sbjct: 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEA-- 76
Query: 1066 YRKHTALVSQEPVIYAG-NIRDNIV-FGKL-----DASENEVVEAARAANAHEFISSLKD 1118
R+ VS +Y R+N+ F L D + E A E +
Sbjct: 77 -RRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLD---- 131
Query: 1119 GYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM 1178
R S G RQ++AIARA++ +P +LLLDE T+ LDV + + ++E + ++
Sbjct: 132 -------RRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA 184
Query: 1179 GRTTIVVA-HRLNTIKKL-DSIALVADGRVVERG 1210
I+ + H + +++L D + ++ GRVV G
Sbjct: 185 LGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.9 bits (246), Expect = 7e-23
Identities = 74/237 (31%), Positives = 116/237 (48%), Gaps = 33/237 (13%)
Query: 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAD--- 410
+I+ V F Y D LK +++++ VA +G SG GKST + L R D
Sbjct: 3 KIDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT 59
Query: 411 --DGIVRIDGVDI--RRLQLKWVRREMGLVSQEHALFGTSIKDNIMFG-KLDATMDEVIA 465
+G +RIDG +I + +Q+ +R+ +G+V Q F SI +N+ +G +++ D
Sbjct: 60 RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDN--- 116
Query: 466 AATAANAHNFIRQ----------LPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVIL 515
FIRQ L + + K+ E LSGGQ+QR+ IARA+ +P +L
Sbjct: 117 --------AFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVL 168
Query: 516 LLDEATSALDSESETLVQNALDQASLGRTTLVVAHKL-STVRNADLIAVVDNGCLVE 571
L+DE SALD S V+ + + T ++V H + R +D A G +VE
Sbjct: 169 LMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE 225
|
Length = 250 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 99.1 bits (247), Expect = 7e-23
Identities = 74/213 (34%), Positives = 112/213 (52%), Gaps = 15/213 (7%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDI--------RR 423
VL +L+VK G+ VA++G SGSGK+T + + + G +R+ + I ++
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77
Query: 424 LQLKWVRREMGLVSQEHALF-GTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEG 482
++ +R+ +G V Q LF ++ +NI+ G + E ATA + G
Sbjct: 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPV-IVKGEPKEEATARARELLAKVGLAG 136
Query: 483 YETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQ-ASL 541
ET R LSGGQ+QR+AIARA+ P ++L DE TSALD E V N + Q A
Sbjct: 137 KETSYPRR---LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE 193
Query: 542 GRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIG 573
RT ++V H++S R+ AD +D G +VE G
Sbjct: 194 KRTMVIVTHEMSFARDVADRAIFMDQGRIVEQG 226
|
Length = 250 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.1 bits (247), Expect = 7e-23
Identities = 69/234 (29%), Positives = 120/234 (51%), Gaps = 13/234 (5%)
Query: 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV---- 1046
K+E R + F Y D L S+E + L+G SGCGKST + + R D+
Sbjct: 6 KMEARGLSFFYG---DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGA 62
Query: 1047 -EQGSVRVDGMDV--RELDVHWYRKHTALVSQEPVIYAGNIRDNIVFG-KLDASENEVVE 1102
+G + +DG ++ +DV R+ +V Q+P + +I +N+ +G +++ +++
Sbjct: 63 RVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYL 122
Query: 1103 AARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALD 1162
A R + ++L D + E + LSGGQ+QR+ IARA+ P +LL+DE SALD
Sbjct: 123 AERVERSLRH-AALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALD 181
Query: 1163 VQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
+ Q ++E + + T I+V H + ++ D A G+++E G Q+
Sbjct: 182 PIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235
|
Length = 253 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.9 bits (246), Expect = 7e-23
Identities = 70/223 (31%), Positives = 115/223 (51%), Gaps = 17/223 (7%)
Query: 1006 DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVE-----QGSVRVDGMDVRE 1060
D ++ +++V+ GT L+G SGCGK+T + I R +D+ G + +DG D+
Sbjct: 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYG 75
Query: 1061 --LDVHWYRKHTALVSQEPVIYAG-NIRDNIVFG-KLDASEN--EVVEAA-RAANAHEFI 1113
+D R+ +V Q+P + ++ DN+V G KL + ++E A R+
Sbjct: 76 PRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALW 135
Query: 1114 SSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEAL 1173
+KD +T LSGGQ+QR+ IARA+ P ILL+DE TSALD S +++ +
Sbjct: 136 DEVKDRLKTP----ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLM 191
Query: 1174 DRIMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
+ T I+V H ++ ++ D+ + G +VE G QL
Sbjct: 192 TDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234
|
Length = 252 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 8e-23
Identities = 73/226 (32%), Positives = 109/226 (48%), Gaps = 47/226 (20%)
Query: 1012 QFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071
+F + V+ G V ++G SG GKST++ LI F GS+ ++G D HT
Sbjct: 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQD-----------HTT 65
Query: 1072 LV-SQEPV--IYAGN-------IRDNIVFG-----KLDASENEVVEA-ARAANAHEFISS 1115
S+ PV ++ N + NI G KL+A++ E + A AR + ++
Sbjct: 66 TPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLAR 125
Query: 1116 LKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDR 1175
L QLSGGQRQR+A+AR ++R ILLLDE SALD Q + + +
Sbjct: 126 LPG-----------QLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQ 174
Query: 1176 IMMGR--TTIVVAHRLNTIKKLDSIA----LVADGRVVERGTYAQL 1215
+ R T ++V+H L + IA +VADGR+ G +L
Sbjct: 175 VCQERQLTLLMVSHSLEDAAR---IAPRSLVVADGRIAWDGPTDEL 217
|
Length = 232 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 1e-22
Identities = 131/551 (23%), Positives = 229/551 (41%), Gaps = 120/551 (21%)
Query: 113 LEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFST 172
L +V R + FFD+ T ++N S+D ++ L ++++ I T
Sbjct: 1038 LRSVSRGTMSFFDT---TPLGRILNRFSRDIDILDNTLPMSY-LYLLQCLFSICSSILVT 1093
Query: 173 YFSWRLSLVAFPTLLLLIIP-GMIYGKYLIYLSKKAYKE--------------------- 210
S LVA ++P G +Y + + + + A +E
Sbjct: 1094 SASQPFVLVA-------LVPCGYLYYRLMQFYNS-ANREIRRIKSVAKSPVFTLLEEALQ 1145
Query: 211 -------YGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLGIKQGTAKGLAV 263
YGKA+ ++++AL + VYS S + +R+ LG++
Sbjct: 1146 GSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRW---------LGVRV-------- 1188
Query: 264 GSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSAL---PELKYFTE 320
FL+ ++ G G + A L LSL A+ L +
Sbjct: 1189 ----------EFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVR 1238
Query: 321 --ASIAAS-----RIFDRIDRV-----PEIDGE------------DTKGLVLDE------ 350
A++ A R+ D V PE+D E D G V+ E
Sbjct: 1239 QVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTS 1298
Query: 351 ------VRGEIEFEHVKFSY----PSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAI 400
G + FE V+ Y P +VL+ + ++ + V +VG +GSGKST +
Sbjct: 1299 AAPHPVQAGSLVFEGVQMRYREGLP-----LVLRGVSFRIAPREKVGIVGRTGSGKSTLL 1353
Query: 401 ALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNI-MFGKLDAT 459
R + G +R++G +I L+ +RR+ ++ Q+ LF +++ N+ F L+A+
Sbjct: 1354 LTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPF--LEAS 1411
Query: 460 MDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIK-NPVILLLD 518
EV AA + EG +++V E G+ S GQ+Q + +ARA++K +L+D
Sbjct: 1412 SAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMD 1471
Query: 519 EATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDL 578
EAT+ +D + +Q + A T + +AH+L TV D I V+D+G + E+G+ +L
Sbjct: 1472 EATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPREL 1531
Query: 579 INRIDGHYAKM 589
+ + M
Sbjct: 1532 VMNRQSIFHSM 1542
|
Length = 1560 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.9 bits (245), Expect = 1e-22
Identities = 62/227 (27%), Positives = 104/227 (45%), Gaps = 34/227 (14%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKST---AIALVQRFYDADDGIVRIDGVDIRRLQL-K 427
L+ +L+V+ G+ VAL+G +G+GK+T I + R G + DG DI L +
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR---PRSGRIIFDGEDITGLPPHE 74
Query: 428 WVRREMGLVSQEHALFGT-SIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYE-- 484
R + V + +F ++++N++ + A + R L E YE
Sbjct: 75 RARLGIAYVPEGRRIFPRLTVEENLL-----------LGAYARRDKEAQERDLEEVYELF 123
Query: 485 ----TKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQ-- 538
+ +R LSGG++Q +AIARA++ P +LLLDE + L + +V+ +
Sbjct: 124 PRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIK 180
Query: 539 ---ASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581
G T L+V AD V++NG +V GT +L+
Sbjct: 181 ELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227
|
Length = 237 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 99.2 bits (247), Expect = 1e-22
Identities = 60/215 (27%), Positives = 111/215 (51%), Gaps = 15/215 (6%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK 1068
VL+ +++++ G + + G +G GK++++ LI + +G ++ G
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------- 98
Query: 1069 HTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERG 1128
+ SQ I G I++NI+FG + E +A E I+ + T GE G
Sbjct: 99 RISFSSQFSWIMPGTIKENIIFG-VSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGG 157
Query: 1129 VQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSE-QVVQEALDRIMMGRTTIVVAH 1187
+ LSGGQR RI++ARA+ ++ + LLD LDV +E ++ + + ++M +T I+V
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTS 217
Query: 1188 RLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAF 1222
++ +KK D I ++ +G GT+++L +R F
Sbjct: 218 KMEHLKKADKILILHEGSSYFYGTFSELQSLRPDF 252
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 99.1 bits (247), Expect = 1e-22
Identities = 78/262 (29%), Positives = 128/262 (48%), Gaps = 27/262 (10%)
Query: 355 IEFEHVKFSY-PSRP-DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDG 412
I F++V ++Y P + + D N + + GK A+VG +GSGKST I + G
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG 62
Query: 413 IVRIDGVDI----RRLQLKWVRREMGLVSQ--EHALFGTSIKDNIMFGKLDATM--DEVI 464
V +D + I + ++ VR+ +G+V Q E LF +++ I+FG + M DEV
Sbjct: 63 TVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEV- 121
Query: 465 AAATAANAHNFIRQLPEGYETKVGERGAL-LSGGQKQRIAIARAIIKNPVILLLDEATSA 523
AH + L G+ V + +SGGQ ++IAI + NP I++LDE T+
Sbjct: 122 ----KNYAHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAG 175
Query: 524 LDSESETLVQNALDQASL--GRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIGTHNDLIN 580
LD +S+ V L +T ++V+H ++ V R AD + V+ G +V + +L
Sbjct: 176 LDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235
Query: 581 R----IDGHYA--KMAKLQRQF 596
D H ++ +LQ F
Sbjct: 236 DKKKLADWHIGLPEIVQLQYDF 257
|
Length = 286 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 2e-22
Identities = 72/238 (30%), Positives = 112/238 (47%), Gaps = 30/238 (12%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
IE + V + VL + + G V ++G SG GKST++ I + ++ G +
Sbjct: 2 IEFKNVSKHFGPTQ---VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58
Query: 1052 RVDGMDVR--ELDVHWYRKHTALVSQE----PVIYAGNIRDNIVFGKLDASENEVVEAAR 1105
VDG+ V ++D R+ +V Q+ P + A +N++FG L V A
Sbjct: 59 IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTA---LENVMFGPLR------VRGAS 109
Query: 1106 AANAHEFISSL--KDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDV 1163
A + L K G +LSGGQ+QR+AIARA+ P ++L DE TSALD
Sbjct: 110 KEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALD- 168
Query: 1164 QSEQVVQEALDRIMM-----GRTTIVVAHRLNTIKKLDSIALVAD-GRVVERGTYAQL 1215
++ E L ++M G T ++V H + +K+ S + D GR+ E G L
Sbjct: 169 --PELRHEVL-KVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223
|
Length = 240 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-22
Identities = 54/216 (25%), Positives = 97/216 (44%), Gaps = 25/216 (11%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELD----VHW 1065
+ + + G ++G SG GKST + ++ R + G + +DG ++ +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREV 68
Query: 1066 YRKHTALVSQEPVIYAG-NIRDNIVFG----KLDASENE--VVEAARAANAHEFISSLKD 1118
RK +V Q+ ++ I N G E + +E + E+ D
Sbjct: 69 RRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD 128
Query: 1119 GYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM- 1177
+LSGG +QR+ +ARA+ P ILL+DEA SALD +Q+ L ++
Sbjct: 129 -----------ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQA 177
Query: 1178 -MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGT 1211
+ +T + + H L+ ++ D I ++ G +V+ GT
Sbjct: 178 TLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGT 213
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 2e-22
Identities = 71/217 (32%), Positives = 110/217 (50%), Gaps = 27/217 (12%)
Query: 376 FNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGL 435
F+L V+ G+ VA++G SG+GKST + L+ F G + ++G D RR + +
Sbjct: 18 FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVSM 75
Query: 436 VSQEHALFG-TSIKDNIMFG-----KLDATM-DEVIAAATAANAHNFIRQLPEGYETKVG 488
+ QE+ LF ++ NI G KL+A +++ A A + + +LP
Sbjct: 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-------- 127
Query: 489 ERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALD----SESETLVQNALDQASLGRT 544
LSGGQ+QR+A+AR +++ ILLLDE SALD E TLV + L T
Sbjct: 128 ---GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQL--T 182
Query: 545 TLVVAHKLS-TVRNADLIAVVDNGCLVEIGTHNDLIN 580
L+V+H L R A VV +G + G ++L++
Sbjct: 183 LLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219
|
Length = 232 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.7 bits (246), Expect = 2e-22
Identities = 68/229 (29%), Positives = 116/229 (50%), Gaps = 23/229 (10%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
IE+ + F Y AL + S+ + G+ L+G +G GKST++ + Y ++G V
Sbjct: 5 IEVEDLHFRYKDGTKAL--KGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEP--VIYAGNIRDNIVFG----KLDASE--NEVVEA 1103
+V G +V + W R LV Q+P +++ + D++ FG LD E V EA
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122
Query: 1104 ARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDV 1163
+A +F K Y LS GQ++R+AIA + +P +++LDE + LD
Sbjct: 123 LKAVRMWDFRD--KPPY---------HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP 171
Query: 1164 QSEQVVQEALDRI-MMGRTTIVVAHRLN-TIKKLDSIALVADGRVVERG 1210
+ ++ + E LDR+ G+T IV H ++ + D + ++ +GRV+ G
Sbjct: 172 RGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEG 220
|
Length = 274 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.4 bits (242), Expect = 2e-22
Identities = 70/239 (29%), Positives = 118/239 (49%), Gaps = 23/239 (9%)
Query: 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVE--- 1047
KI++R V+F Y VL+ +M+ ++G SGCGKST++ + R D+
Sbjct: 4 KIKIRGVNFFYHKHQ---VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 1048 --QGSVRVDGMDVRE--LDVHWYRKHTALVSQEPVIYAGNIRDNIVFG------KLDASE 1097
+G+V +D ++ LDV RK +V Q+P + +I DN+ FG +
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRL 120
Query: 1098 NEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEA 1157
+EVVE + + ++L D + + G+ LSGGQ+QR+ IAR + P ++L+DE
Sbjct: 121 DEVVEKS----LRQ--AALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEP 174
Query: 1158 TSALDVQSEQVVQEALDRIMMGRTTIVVAHRL-NTIKKLDSIALVADGRVVERGTYAQL 1215
SALD S ++E + + T +V H + + D + G +VE G ++
Sbjct: 175 CSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233
|
Length = 251 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.9 bits (243), Expect = 3e-22
Identities = 71/239 (29%), Positives = 126/239 (52%), Gaps = 14/239 (5%)
Query: 355 IEFEHVKFSY-PSRP-DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDG 412
I+FE V ++Y P+ P S L D +L+VK G AL+G +GSGKST + + +G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 413 IVRIDGVDI----RRLQLKWVRREMGLVSQ--EHALFGTSIKDNIMFGKLDATMDEVIAA 466
V + + + ++ ++K VR+++G+V Q E LF ++ ++ FG + + + A
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAE 121
Query: 467 ATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDS 526
AA + E +E E LSGGQ +R+AIA + P +L+LDE T+ LD
Sbjct: 122 KIAAEKLEMVGLADEFWEKSPFE----LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDP 177
Query: 527 ESETLVQNALDQA-SLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRID 583
++ + + G+T ++V H + V + AD + +++ G ++ GT +D+ +D
Sbjct: 178 KARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVD 236
|
Length = 288 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 3e-22
Identities = 57/197 (28%), Positives = 101/197 (51%), Gaps = 19/197 (9%)
Query: 358 EHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRID 417
E++ FSY + +L D +L + AG+ +AL G +G+GK+T ++ G + ++
Sbjct: 3 ENISFSYKKGTE--ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLN 60
Query: 418 GVDIRRLQLKWVRREMGLVSQE--HALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNF 475
G I+ + R+ +G V Q+ + LF S+++ ++ G + A
Sbjct: 61 GKPIKAKER---RKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAET-------- 109
Query: 476 IRQLPEGYETKVGERGAL-LSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQN 534
+ + + Y K ER L LSGGQKQR+AIA A++ +L+ DE TS LD ++ V
Sbjct: 110 VLKDLDLYALK--ERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGE 167
Query: 535 ALDQ-ASLGRTTLVVAH 550
+ + A+ G+ +V+ H
Sbjct: 168 LIRELAAQGKAVIVITH 184
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 99.3 bits (247), Expect = 4e-22
Identities = 73/235 (31%), Positives = 112/235 (47%), Gaps = 21/235 (8%)
Query: 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAD-- 410
G I +H++ +Y + VL D +L+++AG+ +AL+G SG GK+T + + F A
Sbjct: 4 GGIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGL 60
Query: 411 DGIVRIDGVDIRRLQLKWVRREMGLVSQEHALF-GTSIKDNIMFGKLDATMDEVIAAATA 469
G + I D+ +R + L+ Q +ALF ++DN+ FG M + A
Sbjct: 61 TGRIAIADRDLTHAPPH--KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERV 118
Query: 470 ANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESE 529
A+A + A LSGG +QRIAIARAI P +LLLDE SALD+
Sbjct: 119 ADALKLVGLGDAAAHLP-----AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIR 173
Query: 530 TLVQNALDQASLGR-----TTLVVAH-KLSTVRNADLIAVVDNGCLVEIGTHNDL 578
++ + A+L T L V H + + AD ++ +G L G L
Sbjct: 174 ANMREEI--AALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 96.4 bits (241), Expect = 4e-22
Identities = 62/214 (28%), Positives = 98/214 (45%), Gaps = 13/214 (6%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQL-KWVR 430
L D + V+ G+ L+G +G+GK+T L+ F G V DG DI L + R
Sbjct: 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIAR 74
Query: 431 REMGLVSQEHALFGT-SIKDNIMFGKLDATMDEVIAA-------ATAANAHNFIRQLPEG 482
+G Q LF ++ +N+M T ++ A A + ++ G
Sbjct: 75 LGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--G 132
Query: 483 YETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSAL-DSESETLVQNALDQASL 541
LS GQ++R+ IARA+ +P +LLLDE + L E+E L + +
Sbjct: 133 LADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRER 192
Query: 542 GRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGT 574
G T L+V H + V + AD + V+D G ++ GT
Sbjct: 193 GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 95.5 bits (237), Expect = 5e-22
Identities = 63/207 (30%), Positives = 101/207 (48%), Gaps = 8/207 (3%)
Query: 1005 PDALVLRQFSMEVKPGTSVGLVGKSGCGKST----VIGLIQRFYDVEQGSVRVDGMDVRE 1060
L ++ + G +VG+ GCGKS+ ++G +Q S + + E
Sbjct: 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE 71
Query: 1061 LDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGY 1120
R A +Q+P + + +NI FG ++ A + I L G
Sbjct: 72 ATRSRNRYSVAYAAQKPWLLNATVEENITFGS-PFNKQRYKAVTDACSLQPDIDLLPFGD 130
Query: 1121 ETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQ-SEQVVQEALDRIMMG 1179
+TE GERG+ LSGGQRQRI +ARA+ +N I+ LD+ SALD+ S+ ++QE + + +
Sbjct: 131 QTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD 190
Query: 1180 --RTTIVVAHRLNTIKKLDSIALVADG 1204
RT ++V H+L + D I + DG
Sbjct: 191 DKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 95.6 bits (239), Expect = 5e-22
Identities = 57/229 (24%), Positives = 106/229 (46%), Gaps = 23/229 (10%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
++ ++ +Y + D +L V G+ L+G +G+GK+T + ++ G
Sbjct: 1 LQIRNLTKTYKKGT-KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALFGT-SIKDNIMF-----GKLDATMDEVIAAAT 468
I+G IR K R+ +G Q ALF ++++++ F G + + E +
Sbjct: 60 YINGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEV---- 114
Query: 469 AANAHNFIRQ--LPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDS 526
+R L + + LSGG K+++++A A+I P +LLLDE TS LD
Sbjct: 115 ----ELLLRVLGLTDKANKRART----LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDP 166
Query: 527 ESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGT 574
S + + + + GR+ ++ H + D IA++ +G L IG+
Sbjct: 167 ASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGS 215
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 7e-22
Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 17/193 (8%)
Query: 1001 YPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDG--MDV 1058
YP P+ VL+ + + G + L+G +G GKST++ + + G+V +DG +D
Sbjct: 1 YPGGPE--VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 1059 RELDVHWYRKHTALVSQEP--VIYAGNIRDNIVFGKLD--ASENEVVEAARAANAHEFIS 1114
+ R+ LV Q+P ++A ++ ++ FG L+ SE EV R A +
Sbjct: 59 SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEV--ERRVREALTAVG 116
Query: 1115 SLKDGYETECGERGVQ-LSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEAL 1173
+ G ER LSGG+++R+AIA A+ P +LLLDE T+ LD + + L
Sbjct: 117 A--SGLR----ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAIL 170
Query: 1174 DRIMMGRTTIVVA 1186
R+ T+V++
Sbjct: 171 RRLRAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.1 bits (239), Expect = 8e-22
Identities = 68/218 (31%), Positives = 108/218 (49%), Gaps = 22/218 (10%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD-----ADDGIVRIDGVDI-RRLQL 426
LK NL + A + AL+G SG GKST + + R D G + +DG DI + +
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 427 KWVRREMGLVSQEHALFGTSIKDNIMFG------KLDATMDEVIAAATAANAHNFIRQLP 480
+R ++G+V Q+ F SI +N+ +G K +DEV+ + A L
Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAA------LW 132
Query: 481 EGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS 540
+ + ++ LSGGQ+QR+ IAR I P ++L+DE TSALD + ++ +++
Sbjct: 133 DEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELK 192
Query: 541 LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHND 577
T ++V H + R +D A G LVE H+D
Sbjct: 193 KNYTIVIVTHSMQQARRISDRTAFFLMGELVE---HDD 227
|
Length = 249 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 8e-22
Identities = 73/223 (32%), Positives = 115/223 (51%), Gaps = 12/223 (5%)
Query: 355 IEFEHVKFSYPSRPDSI-VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI 413
+E + ++ SYPS + + VLK +L + AG+ VA+VGASGSGKST + ++ G
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 414 VRIDGVDIRRL---QLKWVRRE-MGLVSQE-HALFGTSIKDNIMFGKLDATMDEVIAAAT 468
R+ G D+ L L +RRE G + Q H L + N+ ++ A +
Sbjct: 65 YRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNV---EVPAVYAGLERKQR 121
Query: 469 AANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSES 528
A +++L G E +V + + LSGGQ+QR++IARA++ ++L DE T ALDS S
Sbjct: 122 LLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179
Query: 529 ETLVQNALDQ-ASLGRTTLVVAHKLSTVRNADLIAVVDNGCLV 570
V L Q G T ++V H A+ + + +G +V
Sbjct: 180 GEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIV 222
|
Length = 648 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 95.2 bits (237), Expect = 8e-22
Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 17/227 (7%)
Query: 355 IEFEHVKFSYPSRPDSI-VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI 413
IE H+ + + +LK L VK G++VA+VG SGSGKST +A++ D G
Sbjct: 7 IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGE 66
Query: 414 VRIDGVDIRRL---QLKWVRRE-MGLVSQEHALFGT-SIKDNIMFGKLDATMDEVIAAAT 468
VR+ G + +L +R +G V Q L + +N+ + +
Sbjct: 67 VRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLE-------LRGES 119
Query: 469 AANAHNFIRQLPE--GYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDS 526
+A++ + L E G ++ A LSGG++QR+A+ARA P +L DE T LD
Sbjct: 120 SADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDR 179
Query: 527 ESETLVQNAL--DQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVE 571
+ + + L G T ++V H D + +G LVE
Sbjct: 180 ATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 1e-21
Identities = 59/207 (28%), Positives = 94/207 (45%), Gaps = 41/207 (19%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLI--QRFYDVEQGSVRVDGMDVRELDVHWY 1066
+L+ S + KPG ++G SG GKST++ + +R G V ++G + + +
Sbjct: 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RSF 80
Query: 1067 RKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGE 1126
RK V Q D+I+ L E F + L+
Sbjct: 81 RKIIGYVPQ----------DDILHPTLTVRE-----------TLMFAAKLR--------- 110
Query: 1127 RGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVV 1185
LSGG+R+R++IA ++ NP++L LDE TS LD S V L R+ GRT I
Sbjct: 111 ---GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICS 167
Query: 1186 AHRLNT--IKKLDSIALVADGRVVERG 1210
H+ ++ + D + L++ GRV+ G
Sbjct: 168 IHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-21
Identities = 79/253 (31%), Positives = 114/253 (45%), Gaps = 64/253 (25%)
Query: 996 RVDFAYPS---RPDALVLR---QFSMEVKPGTSVGLVGKSGCGKST----VIGLIQRFYD 1045
RV F R LR S+ ++ G ++GLVG+SG GKST ++ LI
Sbjct: 283 RVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI----- 337
Query: 1046 VEQGSVRVDGMDVRELDVHW---YRKHTALVSQEPVIYAG-----NIRDNIVFG------ 1091
QG +R DG D+ L R+ +V Q+P Y + I G
Sbjct: 338 PSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP--YGSLSPRMTVGQIIEEGLRVHEP 395
Query: 1092 KLDASENE--VVEAARAAN---------AHEFISSLKDGYETECGERGVQLSGGQRQRIA 1140
KL A+E + V+EA HEF SGGQRQRIA
Sbjct: 396 KLSAAERDQRVIEALEEVGLDPATRNRYPHEF-------------------SGGQRQRIA 436
Query: 1141 IARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKKL-DS 1197
IARA+I P ++LLDE TSALD + V + L + G + + ++H L ++ L
Sbjct: 437 IARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHR 496
Query: 1198 IALVADGRVVERG 1210
+ ++ DG++VE+G
Sbjct: 497 VIVMRDGKIVEQG 509
|
Length = 534 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.9 bits (238), Expect = 1e-21
Identities = 68/236 (28%), Positives = 118/236 (50%), Gaps = 25/236 (10%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+E E++ F Y D L + + G+ V+++G +GSGKST L+ ++ +G V
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQ--EHALFGTSIKDNIMFG------KLDATMDEVIAA 466
+IDG + + +RR++G+V Q ++ G +++D++ FG + + V A
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124
Query: 467 ATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALD- 525
A N +F + P A LSGGQKQR+A+A I P I++LDE+TS LD
Sbjct: 125 LLAVNMLDFKTREP-----------ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDP 173
Query: 526 ---SESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDL 578
E ++ ++ L T L + H L ++D I V+ G +++ ++L
Sbjct: 174 TGRQEIMRVIHEIKEKYQL--TVLSITHDLDEAASSDRILVMKAGEIIKEAAPSEL 227
|
Length = 277 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 2e-21
Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 27/207 (13%)
Query: 1006 DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELD--- 1062
D ++L ++ ++ G ++G+SG GKST++ +I + G V ++G + L+
Sbjct: 10 DKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKK 69
Query: 1063 VHWYRKHT--------ALVSQEPVIYAGNIRDNIVFGKLDASENE--VVEAARAANAHEF 1112
+R+ AL+ E V N+ + + KL E EA +
Sbjct: 70 ASKFRREKLGYLFQNFALIENETVEE--NLDLGLKYKKLSKKEKREKKKEALEKVGLNLK 127
Query: 1113 ISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEA 1172
+ + YE LSGG++QR+A+ARAI++ P ++L DE T +LD ++ V +
Sbjct: 128 LK--QKIYE---------LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDL 176
Query: 1173 LDRIM-MGRTTIVVAHRLNTIKKLDSI 1198
L + G+T I+V H K+ D +
Sbjct: 177 LLELNDEGKTIIIVTHDPEVAKQADRV 203
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 2e-21
Identities = 63/216 (29%), Positives = 105/216 (48%), Gaps = 15/216 (6%)
Query: 1006 DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW 1065
L ++EV G+ V L+G SG GKST++ +I + G +R++G D +
Sbjct: 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR- 70
Query: 1066 YRKHTALVSQEPVIYAG-NIRDNIVFGKLDASENEVVEAARAANAHEFI--SSLKDGYET 1122
+ V Q ++ +RDNI FG + AR E + L D Y
Sbjct: 71 -DRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPN 129
Query: 1123 ECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGR 1180
QLSGGQRQR+A+ARA+ P +LLLDE ALD + + ++ L ++ +
Sbjct: 130 -------QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHV 182
Query: 1181 TTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
TT+ V H ++ D I ++++G++ + G+ ++
Sbjct: 183 TTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.2 bits (237), Expect = 2e-21
Identities = 67/213 (31%), Positives = 104/213 (48%), Gaps = 20/213 (9%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADD-----GIVRIDGVDIRR--LQ 425
+K +++ + K AL+G SGSGKST + + R D D G + G+DI R +
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 426 LKWVRREMGLVSQEHALFGTSIKDNIMFG------KLDATMDEVIAAATAANAHNFIRQL 479
+ +R+ +G+V Q F SI +NI F K +DE++ + A L
Sbjct: 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAA------L 149
Query: 480 PEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQA 539
+ + + + LSGGQ+QR+ IARAI P ILL+DE SALD S ++ + +
Sbjct: 150 WDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL 209
Query: 540 SLGRTTLVVAHKLS-TVRNADLIAVVDNGCLVE 571
T ++V H + R +D A G L+E
Sbjct: 210 KKNYTIIIVTHNMQQAARASDYTAFFYLGDLIE 242
|
Length = 267 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 2e-21
Identities = 69/240 (28%), Positives = 109/240 (45%), Gaps = 26/240 (10%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
+E+ + F Y +R L S V+PG V L+G +G GKST+ L+ R Y ++G +
Sbjct: 2 LEVAGLSFRYGARR---ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDAS--ENEVVEAA----R 1105
V G D+R +V Q+P + LD S +N AA
Sbjct: 59 SVAGHDLRRAPRAALA-RLGVVFQQPTL------------DLDLSVRQNLRYHAALHGLS 105
Query: 1106 AANAHEFISSLKD--GYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDV 1163
A A I+ L G ++ +L+GG R+R+ IARA++ P +LLLDE T LD
Sbjct: 106 RAEARARIAELLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDP 165
Query: 1164 QSEQVVQEALDRIMMGRTTIVV--AHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGA 1221
S + + + + V+ H ++ I+ D + ++ GRV+ G A+L G
Sbjct: 166 ASRAAITAHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGATGG 225
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.1 bits (236), Expect = 2e-21
Identities = 71/230 (30%), Positives = 113/230 (49%), Gaps = 30/230 (13%)
Query: 1008 LVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVE-----QGSVRVDGMDV--RE 1060
+ +R + ++ G +G SGCGKSTV+ + R D+ +G V G DV +
Sbjct: 22 MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKG 81
Query: 1061 LDVHWYRKHTALVSQEPVIYAGNIRDNIVFG------KLDASENEVVEAARAANAHEFIS 1114
+D R++ +V Q+P ++ +I DN+ FG K D + V A + A
Sbjct: 82 VDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGD-RVKHALQGA------- 133
Query: 1115 SLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALD 1174
+L D + + G+ LSGGQ+QR+ IARAI P +LLLDE SALD + + V+E +
Sbjct: 134 ALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMV 193
Query: 1175 RIMMGRTTIVVAHRLNTIKKL-DSIALVA--------DGRVVERGTYAQL 1215
+ T +V H + ++ D+ A + G +VE G AQ+
Sbjct: 194 ELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQI 243
|
Length = 261 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.2 bits (237), Expect = 2e-21
Identities = 66/213 (30%), Positives = 102/213 (47%), Gaps = 27/213 (12%)
Query: 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV---- 1046
K+ R V Y + L +++ T +G SGCGKST + + R D
Sbjct: 19 KMRARDVSVFYG---EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGC 75
Query: 1047 -EQGSVRVDGMDV--RELDVHWYRKHTALVSQEPVIYAGNIRDNIVFG-------KLDAS 1096
G + +DG D+ LDV R +V Q+P + +I +N+ +G + A
Sbjct: 76 RVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAE 135
Query: 1097 ENEVVEAA--RAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLL 1154
+E+VE + +A E +KD E G LSGGQ+QR+ IARAI +P ++L+
Sbjct: 136 LDEIVETSLRKAGLWEE----VKD----RLHEPGTGLSGGQQQRLCIARAIAVSPEVILM 187
Query: 1155 DEATSALDVQSEQVVQEALDRIMMGRTTIVVAH 1187
DE SALD + V+E +D + T ++V H
Sbjct: 188 DEPCSALDPIATAKVEELIDELRQNYTIVIVTH 220
|
Length = 267 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.2 bits (237), Expect = 2e-21
Identities = 67/242 (27%), Positives = 111/242 (45%), Gaps = 26/242 (10%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
I F++V F Y S S LKD + + G+ ++VG +GSGKST L+ G +
Sbjct: 8 IVFKNVSFQYQS-DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQ--EHALFGTSIKDNIMFG------KLDATMDEVIAA 466
+ I + +R+ +G+V Q ++ G+ +K ++ FG D V A
Sbjct: 67 FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEA 126
Query: 467 ATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDS 526
+ P LSGGQKQR+AIA + NP +++LDEATS LD
Sbjct: 127 LKQVDMLERADYEPNA-----------LSGGQKQRVAIAGVLALNPSVIILDEATSMLDP 175
Query: 527 ESE----TLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRI 582
++ LV+ ++ T + + H LS AD + V++ G + + GT ++ +
Sbjct: 176 DARQNLLDLVRKV--KSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233
Query: 583 DG 584
+
Sbjct: 234 EE 235
|
Length = 269 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 2e-21
Identities = 72/228 (31%), Positives = 112/228 (49%), Gaps = 43/228 (18%)
Query: 1014 SMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVE-----QGSVRVDGMDV--RELDVHWY 1066
++ ++P + +G SGCGKSTV+ + R ++V +G V +DG D+ +D
Sbjct: 24 NLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83
Query: 1067 RKHTALVSQEPVIY-AGNIRDNIVFG-KLDASEN-----EVVEAA-RAANAHEFISSLKD 1118
R+ +V Q P + +IRDN+V G KL+ N E+VE + R AN L +
Sbjct: 84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGAN-------LWN 136
Query: 1119 GYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM 1178
+ + G LSGGQ+QR+ IARAI P +LL+DE SALD S +++ ++ +
Sbjct: 137 EVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ 196
Query: 1179 GRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLA 1226
T ++V H + A V+D + AFFNL
Sbjct: 197 DYTIVIVTHNMQ------QAARVSD---------------QTAFFNLE 223
|
Length = 258 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 2e-21
Identities = 65/215 (30%), Positives = 110/215 (51%), Gaps = 15/215 (6%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK 1068
VL+ S +++ G + + G +G GKS+++ +I + +G ++ G
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------- 487
Query: 1069 HTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERG 1128
+ Q I G I+DNI+FG L E +A E I+ + +T GE G
Sbjct: 488 RISFSPQTSWIMPGTIKDNIIFG-LSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGG 546
Query: 1129 VQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSE-QVVQEALDRIMMGRTTIVVAH 1187
+ LSGGQR RI++ARA+ ++ + LLD + LDV +E ++ + L ++M +T I+V
Sbjct: 547 ITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTS 606
Query: 1188 RLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAF 1222
+L +KK D I L+ +G GT+++L R F
Sbjct: 607 KLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDF 641
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.2 bits (237), Expect = 2e-21
Identities = 77/243 (31%), Positives = 121/243 (49%), Gaps = 22/243 (9%)
Query: 355 IEFEHVKFSYPS-RP-DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDG 412
I ++V ++Y + P + L D NL ++ G A +G +GSGKST + L+ + G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 413 IVRIDGVDIR----RLQLKWVRREMGLVSQ--EHALFGTSIKDNIMFGKLDATMDEVIAA 466
VR+D I +K +R+++GLV Q E LF ++ ++ FG + + + A
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAE 122
Query: 467 ATAANAHNFIRQLPEGYETKVGERGAL-LSGGQKQRIAIARAIIKNPVILLLDEATSALD 525
A A + G + E+ LSGGQ +R+AIA + P IL+LDE T+ LD
Sbjct: 123 ALAREKLALV-----GISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
Query: 526 ----SESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580
E TL + L Q+ G T ++V H + V N AD + V++ G LV G D+
Sbjct: 178 PKGRKELMTLFKK-LHQS--GMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234
Query: 581 RID 583
+D
Sbjct: 235 DVD 237
|
Length = 280 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.1 bits (248), Expect = 2e-21
Identities = 66/235 (28%), Positives = 106/235 (45%), Gaps = 24/235 (10%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+E + S+ L +L V+ G+ AL+G +G+GKST + ++ Y D G +
Sbjct: 9 LELRGISKSFG---GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65
Query: 415 RIDGVDIRRLQLKWVRREMG--LVSQEHALFGT-SIKDNIMFG----KLDATMD--EVIA 465
IDG + + G V QE +L S+ +NI G + +D +
Sbjct: 66 LIDGKPVAFSSPR-DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRR 124
Query: 466 AATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALD 525
A A + P+ T VG+ LS Q+Q + IARA+ + +L+LDE T+AL
Sbjct: 125 RARELLARLGLDIDPD---TLVGD----LSIAQRQMVEIARALSFDARVLILDEPTAALT 177
Query: 526 -SESETLVQNALDQASLGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIGTHNDL 578
E+E L + G + ++H+L V AD I V+ +G +V GT
Sbjct: 178 VKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVV--GTRPTA 230
|
Length = 500 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 2e-21
Identities = 79/230 (34%), Positives = 121/230 (52%), Gaps = 14/230 (6%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
IE ++K S+ VL D +L + +G+ VAL+G SGSGK+T + ++ G +
Sbjct: 3 IEIANIKKSFGRTQ---VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHI 59
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALF-GTSIKDNIMFGKLDATMDEVIAAATAANAH 473
R G D+ RL + R++G V Q +ALF ++ DNI FG T+ AA
Sbjct: 60 RFHGTDVSRLHAR--DRKVGFVFQHYALFRHMTVFDNIAFG---LTVLPRRERPNAAAIK 114
Query: 474 NFIRQLPEGYE-TKVGER-GALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETL 531
+ QL E + + +R A LSGGQKQR+A+ARA+ P ILLLDE ALD++
Sbjct: 115 AKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKE 174
Query: 532 VQNALDQ--ASLGRTTLVVAH-KLSTVRNADLIAVVDNGCLVEIGTHNDL 578
++ L Q L T++ V H + + AD + V+ G + + GT + +
Sbjct: 175 LRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
|
Length = 353 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.2 bits (237), Expect = 3e-21
Identities = 67/236 (28%), Positives = 108/236 (45%), Gaps = 25/236 (10%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
IE++ + F Y + L S VK G + ++G +G GKST + LI + E G +
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEP--VIYAGNIRDNIVFG------KLDASENEVVEA 1103
+DG + E +V R +V Q P + D++ FG + + V EA
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEA 124
Query: 1104 ARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDV 1163
+F K+ +LSGGQ+QR+AIA A+ P I++LDEATS LD
Sbjct: 125 LELVGMQDF----KE-------REPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
Query: 1164 QSE----QVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQL 1215
+ + ++ D M T I + H L+ + D + ++ +G+V T +L
Sbjct: 174 EGRLELIKTIKGIRDDYQM--TVISITHDLDEVALSDRVLVMKNGQVESTSTPREL 227
|
Length = 279 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 93.7 bits (234), Expect = 3e-21
Identities = 63/216 (29%), Positives = 102/216 (47%), Gaps = 16/216 (7%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW-YR 1067
+L S+ V G V L+G++G GK+T++ I GS+R DG D+ L H R
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74
Query: 1068 KHTALVSQEPVIYAG-NIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGE 1126
V + I+ + +N++ G + AR +E LK+ + G
Sbjct: 75 AGIGYVPEGRRIFPELTVEENLLLGAYARRRAKR--KARLERVYELFPRLKERRKQLAG- 131
Query: 1127 RGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM----MGRTT 1182
LSGG++Q +AIARA++ P +LLLDE + L + ++V+E + I G T
Sbjct: 132 ---TLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIRELRDEGVTI 185
Query: 1183 IVVAHRLNTIKKL-DSIALVADGRVVERGTYAQLTH 1217
++V ++ D ++ GRVV GT A+L
Sbjct: 186 LLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.3 bits (234), Expect = 3e-21
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 23/223 (10%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVE-----QGSVRVDGMDVRE--LD 1062
L+ SM++ + L+G SGCGKST I + R D+ +G V ++G D+ E +D
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87
Query: 1063 VHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENE-----VVEAA--RAANAHEFISS 1115
V RK+ +V Q+P + +I DN+ +G N+ VVE A AA E
Sbjct: 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDR 147
Query: 1116 LKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDR 1175
LK + LSGGQ+QR+ IAR + P I+L DE TSALD S +++ +
Sbjct: 148 LK--------SPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMN 199
Query: 1176 IMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQLTH 1217
+ T ++V H + ++ D G ++E G Q+ H
Sbjct: 200 LKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242
|
Length = 258 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 3e-21
Identities = 52/219 (23%), Positives = 89/219 (40%), Gaps = 22/219 (10%)
Query: 973 SSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCG 1032
A G R I + + P +L + + EV+PG + + G+SG G
Sbjct: 374 EKPARTGRRIDFDDNADHGITLENLSLRTPDG--QTLLSELNFEVRPGERLLITGESGAG 431
Query: 1033 KSTVIGLIQRFYDVEQGSV-RVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVF- 1090
K++++ + + G + + Q P + G +R+ + +
Sbjct: 432 KTSLLRALAGLWPWGSGRISMPADSA------------LLFLPQRPYLPQGTLREALCYP 479
Query: 1091 -GKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNP 1149
D S+ E+V + L + E LSGG++QR+A AR ++ P
Sbjct: 480 NAAPDFSDAELVAVLHKVGLGDLAERLDE--EDRWDRV---LSGGEQQRLAFARLLLHKP 534
Query: 1150 TILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHR 1188
+ LDEATSALD ++E + + L + T I V HR
Sbjct: 535 KWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.3 bits (234), Expect = 3e-21
Identities = 67/213 (31%), Positives = 104/213 (48%), Gaps = 20/213 (9%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI-----VRIDGVDIRRLQLK 427
LK +L + AL+G SG GKST + + R D G+ V + G +I
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 428 WV--RREMGLVSQEHALFGTSIKDNIMFG------KLDATMDEVIAAATAANAHNFIRQL 479
V R+++G+V Q+ F SI +N+++G K A +DE + + A +
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAA------I 134
Query: 480 PEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQA 539
+ + + E LSGGQ+QR+ IAR + P ++LLDE TSALD S T ++N L +
Sbjct: 135 WDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL 194
Query: 540 SLGRTTLVVAHKLSTV-RNADLIAVVDNGCLVE 571
T ++V H + R +D A G L+E
Sbjct: 195 RDQYTIILVTHSMHQASRISDKTAFFLTGNLIE 227
|
Length = 252 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 4e-21
Identities = 72/222 (32%), Positives = 107/222 (48%), Gaps = 25/222 (11%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD-----A 409
I ++V SY +K+ + GK AL+G SG GKST + + R D +
Sbjct: 14 ISLQNVTISYG---TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS 70
Query: 410 DDGIVRIDGVDI--RRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGK----LDATMDEV 463
G V DG D+ R+ VRR +G+V Q+ F SI +NI FG MDE+
Sbjct: 71 LKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDEL 130
Query: 464 IAAATAANAHNFIRQLPEGYETK--VGERGALLSGGQKQRIAIARAIIKNPVILLLDEAT 521
+ + +R+ E K + E G LSGGQ+QR+ IAR I P ++L+DE
Sbjct: 131 VERS--------LRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPC 182
Query: 522 SALDSESETLVQNALDQASLGRTTLVVAHKL-STVRNADLIA 562
SALD S ++ + + T ++V H + VR +D+ A
Sbjct: 183 SALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTA 224
|
Length = 269 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 4e-21
Identities = 63/220 (28%), Positives = 110/220 (50%), Gaps = 16/220 (7%)
Query: 361 KFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVD 420
K + D+ VLK +L + G+ VA+VG+SGSGKST + L+ + G V +G
Sbjct: 9 KRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQS 68
Query: 421 IRRL----QLKWVRREMGLVSQEHALFGT-SIKDNIMFGKLDATMDEVIAAATAANAHNF 475
+ +L + K +++G + Q H L + +N+ M +I + A
Sbjct: 69 LSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVA-------MPLLIGKKSVKEAKER 121
Query: 476 IRQLPE--GYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQ 533
++ E G E ++ R + LSGG++QR+AIARA++ P ++L DE T LD+ + ++
Sbjct: 122 AYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIF 181
Query: 534 NALDQ--ASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVE 571
+ + + L + LVV H L + D + + +G L
Sbjct: 182 DLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 99.8 bits (249), Expect = 5e-21
Identities = 75/225 (33%), Positives = 112/225 (49%), Gaps = 24/225 (10%)
Query: 362 FSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAI-ALVQRFYDADDGIVRIDGVD 420
FS+ S+ + L + NL V G VA+VG++G GK++ I A++ D V I G
Sbjct: 622 FSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTV 681
Query: 421 IRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFG-KLDATMDEVIAAATAANAHNFIRQL 479
Q+ W+ F +++DNI+FG D E TA H+ + L
Sbjct: 682 AYVPQVSWI-------------FNATVRDNILFGSPFDPERYERAIDVTAL-QHD-LDLL 726
Query: 480 PEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQA 539
P G T++GERG +SGGQKQR+++ARA+ N + + D+ SALD+ V + +
Sbjct: 727 PGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKD 786
Query: 540 SLGRTTLVVA----HKLSTVRNADLIAVVDNGCLVEIGTHNDLIN 580
L T V+ H LS V D I +V G + E GT+ +L N
Sbjct: 787 ELRGKTRVLVTNQLHFLSQV---DRIILVHEGMIKEEGTYEELSN 828
|
Length = 1622 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 5e-21
Identities = 79/252 (31%), Positives = 120/252 (47%), Gaps = 52/252 (20%)
Query: 355 IEFEHVKFSYPSRP-------DSIV-LKDFNLKVKAGKSVALVGASGSGKST-AIALVQR 405
+E E ++ +P + D + + +L ++ G+++ LVG SGSGKST +AL++
Sbjct: 277 LEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLR- 335
Query: 406 FYDADDGIVRIDGVDIRRL---QLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMD- 461
G +R DG DI L +++ +RR M +V Q+ +G L M
Sbjct: 336 -LIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP------------YGSLSPRMTV 382
Query: 462 -EVIA--------AATAAN-AHNFIRQLPEGYETKVGERGALL-------SGGQKQRIAI 504
++I +AA I L E VG A SGGQ+QRIAI
Sbjct: 383 GQIIEEGLRVHEPKLSAAERDQRVIEALEE-----VGLDPATRNRYPHEFSGGQRQRIAI 437
Query: 505 ARAIIKNPVILLLDEATSALDSESETLVQNALD--QASLGRTTLVVAHKLSTVRN-ADLI 561
ARA+I P ++LLDE TSALD + V + L Q G + L ++H L+ VR +
Sbjct: 438 ARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRV 497
Query: 562 AVVDNGCLVEIG 573
V+ +G +VE G
Sbjct: 498 IVMRDGKIVEQG 509
|
Length = 534 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.6 bits (244), Expect = 6e-21
Identities = 65/234 (27%), Positives = 111/234 (47%), Gaps = 24/234 (10%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
+E+R + ++ L S+ V+PG L+G++G GKST++ ++ Y + G +
Sbjct: 9 LELRGISKSFGGVK---ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65
Query: 1052 RVDGMDVRELDVHWYRKH-TALVSQEPVIYAGN--IRDNIVFGKLDASENEVVEAARA-A 1107
+DG V A V QE + N + +NI G+ +++
Sbjct: 66 LIDGKPVAFSSPRDALAAGIATVHQELSL-VPNLSVAENIFLGREPTRRFGLIDRKAMRR 124
Query: 1108 NAHEFISSLKDGY--ETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDV-Q 1164
A E ++ L +T G+ LS QRQ + IARA+ + +L+LDE T+AL V +
Sbjct: 125 RARELLARLGLDIDPDTLVGD----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKE 180
Query: 1165 SEQVVQEALDRIMM----GRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYA 1213
+E++ D I G I ++HRL+ + ++ D I ++ DGRVV A
Sbjct: 181 TERL----FDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTA 230
|
Length = 500 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.2 bits (231), Expect = 8e-21
Identities = 60/218 (27%), Positives = 111/218 (50%), Gaps = 16/218 (7%)
Query: 1006 DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGM------DVR 1059
D +L+ ++++ + G++G SG GKST++ ++ R ++ ++VDG D+
Sbjct: 22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIF 81
Query: 1060 ELDVHWYRKHTALVSQEPVIYAG-NIRDNIVFGKLDASENEVVEAARAANAHEFISSLKD 1118
++D RK +V Q+P + +I DNI + E E + K
Sbjct: 82 QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEE----CLRKV 137
Query: 1119 GYETECGER----GVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALD 1174
G E +R QLSGGQ+QR+ IARA+ P +LL+DE TS +D+ + Q +++ +
Sbjct: 138 GLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLIT 197
Query: 1175 RIMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGT 1211
+ ++V+H + ++ D +A + +G +VE G+
Sbjct: 198 ELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGS 235
|
Length = 257 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 92.2 bits (230), Expect = 8e-21
Identities = 63/224 (28%), Positives = 102/224 (45%), Gaps = 32/224 (14%)
Query: 370 SIVLKDFNLKVKAGKSVALVGASGSGKST----AIALVQRFYDADDGIVRIDGVDIRRLQ 425
S +L+ +L+V G+ ++G +G GK+T + L+ G +R+DG DI +L
Sbjct: 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV----KSGSIRLDGEDITKLP 68
Query: 426 LKW-VRREMGLVSQEHALFGT-SIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGY 483
R + V Q +F ++++N++ G A I E Y
Sbjct: 69 PHERARAGIAYVPQGREIFPRLTVEENLLTG-----------LAALPRRSRKI--PDEIY 115
Query: 484 E------TKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALD 537
E +G RG LSGGQ+Q++AIARA++ P +LLLDE T + + +
Sbjct: 116 ELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIR 175
Query: 538 Q--ASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDL 578
+ A G L+V L R AD V++ G +V G ++L
Sbjct: 176 RLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 93.0 bits (231), Expect = 8e-21
Identities = 72/225 (32%), Positives = 110/225 (48%), Gaps = 23/225 (10%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQ------ 425
VL N V AG+ VAL+G SGSGKST + ++ D+G ++++G + +
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74
Query: 426 -------LKWVRREMGLVSQEHALF-GTSIKDNIMFGK-LDATMDEVIAAATAANAHNFI 476
L+ +R ++G+V Q LF ++ DN+ L M A A + +
Sbjct: 75 VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMV 134
Query: 477 RQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNAL 536
G K A LSGGQ+QR+AIARA+ P ++L DE TSALD E V N +
Sbjct: 135 -----GLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVI 189
Query: 537 DQ--ASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDL 578
+ + T L+V H++ R AD + D G +VE G +++
Sbjct: 190 RRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.7 bits (233), Expect = 9e-21
Identities = 65/218 (29%), Positives = 109/218 (50%), Gaps = 19/218 (8%)
Query: 369 DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADD-----GIVRIDGVDIRR 423
D L D ++ + + A++G SG GKST + + R D D G + G ++
Sbjct: 51 DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYD 110
Query: 424 LQLKWV--RREMGLVSQEHALFGTSIKDNIMFG----KLDATMDEVIAAATAANAHNFIR 477
+ V RR +G+V Q+ F SI DN+ +G D +DE + + A
Sbjct: 111 ADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAA----- 165
Query: 478 QLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALD 537
L + + ++ G LSGGQ+QR+ IARAI +P ++L+DE SALD + + +++ ++
Sbjct: 166 -LWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIE 224
Query: 538 QASLGRTTLVVAHKL-STVRNADLIAV-VDNGCLVEIG 573
+ + T ++V H + R +D AV + G LVE
Sbjct: 225 ELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFD 262
|
Length = 285 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.8 bits (230), Expect = 9e-21
Identities = 69/218 (31%), Positives = 112/218 (51%), Gaps = 25/218 (11%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVE-----QGSVRVDGMDV--RELD 1062
++ SM+ + ++G SGCGKSTV+ I R +D+ G + +D D+ R +D
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 1063 VHWYRKHTALVSQEPVIY-AGNIRDNIVFG-KLD-----ASENEVVEAA--RAANAHEFI 1113
R+ +V Q+P + A +I DN++ G KL+ + +E+VE++ R A E
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK 139
Query: 1114 SSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEAL 1173
LK ++LSGGQ+QR+ IAR I P ++L+DE SALD S ++E +
Sbjct: 140 DRLKSN--------AMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELI 191
Query: 1174 DRIMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERG 1210
+ + T I+V H + ++ D A G +VE G
Sbjct: 192 EELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECG 229
|
Length = 252 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 1e-20
Identities = 55/231 (23%), Positives = 103/231 (44%), Gaps = 32/231 (13%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
+++ + Y + L S+ + PG GL+G +G GK+T++ ++ G++
Sbjct: 1 LQLENLTKRYGKK---RALDGVSLTLGPGMY-GLLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLD-----------ASENEV 1100
R+DG DV + R+ + QE +Y N V LD + V
Sbjct: 57 RIDGQDVLK-QPQKLRRRIGYLPQEFGVYP-NFT---VREFLDYIAWLKGIPSKEVKARV 111
Query: 1101 VEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSA 1160
E N + ++ LSGG R+R+ IA+A++ +P+IL++DE T+
Sbjct: 112 DEVLELVNLGDRAK-----------KKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAG 160
Query: 1161 LDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERG 1210
LD + + L + R I+ H + ++ L + +A++ G++V G
Sbjct: 161 LDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 1e-20
Identities = 69/220 (31%), Positives = 108/220 (49%), Gaps = 21/220 (9%)
Query: 369 DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADD-----GIVRIDGVDI-- 421
+ L D +L + A +G SG GKST + + R D D G + +DG DI
Sbjct: 31 EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD 90
Query: 422 RRLQLKWVRREMGLVSQEHALFGTSIKDNIMFG-------KLDATMDEVIAAATAANAHN 474
RL + +R +G+V Q+ F SI +N+ +G + A +DE++ +
Sbjct: 91 PRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAG-- 148
Query: 475 FIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQN 534
L E + ++ E G LSGGQ+QR+ IARAI +P ++L+DE SALD + V+
Sbjct: 149 ----LWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEE 204
Query: 535 ALDQASLGRTTLVVAHKLS-TVRNADLIAVVDNGCLVEIG 573
+D+ T ++V H + R + A G LVE+G
Sbjct: 205 LIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVG 244
|
Length = 267 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 1e-20
Identities = 61/187 (32%), Positives = 92/187 (49%), Gaps = 21/187 (11%)
Query: 1016 EVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV-----EQGSVRVDGMDV--RELDVHWYRK 1068
++ G L+G SGCGKSTV+ + R D+ +G V DG D+ +D R+
Sbjct: 35 DIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRR 94
Query: 1069 HTALVSQEPVIYAGNIRDNIVFGK----LDASENEVVEAA--RAANAHEFISSLKDGYET 1122
+V Q+P + +I +NI FG +E+VE + +AA E L
Sbjct: 95 RIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLN----- 149
Query: 1123 ECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTT 1182
E G LSGGQ+QR+ IAR I P ++L+DE SALD S ++E + + T
Sbjct: 150 ---ESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTI 206
Query: 1183 IVVAHRL 1189
++V H +
Sbjct: 207 VIVTHNM 213
|
Length = 269 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.6 bits (227), Expect = 2e-20
Identities = 65/215 (30%), Positives = 105/215 (48%), Gaps = 20/215 (9%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI-----VRIDGVDI--RRLQ 425
L D NL + K AL+G SG GKST + + R D + V +DG +I + +
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 426 LKWVRREMGLVSQEHALFGTSIKDNIMFG------KLDATMDEVIAAATAANAHNFIRQL 479
+ +R+ +G+V Q+ F SI DN+ +G K +D+++ A A L
Sbjct: 80 VVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAA------L 133
Query: 480 PEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQA 539
+ + + + LSGGQ+QR+ IAR I P ++L+DE TSALD S +++ + +
Sbjct: 134 WDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVEL 193
Query: 540 SLGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIG 573
T ++V H + R +D A G L+E
Sbjct: 194 KKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFN 228
|
Length = 251 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 2e-20
Identities = 69/239 (28%), Positives = 119/239 (49%), Gaps = 17/239 (7%)
Query: 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD----- 408
++E + F Y D L D +L+ + + AL+G SG GKST + + R D
Sbjct: 6 KMEARGLSFFYG---DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGA 62
Query: 409 ADDGIVRIDGVDI--RRLQLKWVRREMGLVSQEHALFGTSIKDNIMFG-KLDATMDEVIA 465
+G + +DG +I + + +RR +G+V Q+ F SI +N+ +G +++ D+
Sbjct: 63 RVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDK--- 119
Query: 466 AATAANAHNFIRQ--LPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSA 523
A A +R L + + ++ E LSGGQ+QR+ IARA+ P +LL+DE SA
Sbjct: 120 AYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASA 179
Query: 524 LDSESETLVQNALDQASLGRTTLVVAHKL-STVRNADLIAVVDNGCLVEIGTHNDLINR 581
LD + ++ + + T ++V H + R +D+ A G L+E+G + R
Sbjct: 180 LDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTR 238
|
Length = 253 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.0 bits (228), Expect = 2e-20
Identities = 66/219 (30%), Positives = 112/219 (51%), Gaps = 10/219 (4%)
Query: 369 DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGV------DIR 422
D +LKD +K+ ++G SGSGKST + ++ R + D +++DG DI
Sbjct: 22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIF 81
Query: 423 RLQLKWVRREMGLVSQEHALF-GTSIKDNIMFG-KLDATMDEVIAAATAANAHNFIRQLP 480
++ +R+E+G+V Q+ F SI DNI + K ++ +
Sbjct: 82 QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWK 141
Query: 481 EGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS 540
E Y+ ++ + LSGGQ+QR+ IARA+ P +LL+DE TS +D + ++ + +
Sbjct: 142 EVYD-RLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK 200
Query: 541 LGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIGTHNDL 578
++V+H V R AD +A + NG LVE G+ N++
Sbjct: 201 NEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239
|
Length = 257 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 2e-20
Identities = 63/215 (29%), Positives = 102/215 (47%), Gaps = 20/215 (9%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVE-----QGSVRVDGMDV--RELD 1062
L S++ P L+G SG GKST++ I R D+ GS+ +G ++ D
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 1063 VHWYRKHTALVSQEPVIYAGNIRDNIVFG------KLDASENEVVEAARAANAHEFISSL 1116
RK +V Q+P + +I +N+V+G K +E VE + +S+
Sbjct: 81 TVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKG------ASI 134
Query: 1117 KDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRI 1176
D + + + LSGGQ+QR+ IAR + +P I+LLDE TSALD S ++E L +
Sbjct: 135 WDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL 194
Query: 1177 MMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERG 1210
T ++V + ++ D DG ++E
Sbjct: 195 KDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYN 229
|
Length = 252 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 2e-20
Identities = 68/227 (29%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 373 LKDFNLKVK----AGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDI----RRL 424
L DF+L A+ G SGSGK+T I L+ D+G + ++G + + +
Sbjct: 9 LGDFSLDADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGI 68
Query: 425 QLKWVRREMGLVSQEHALFG-TSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGY 483
L +R +G V QE LF S++ N+ +G A E + I L G
Sbjct: 69 FLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSE-----RRISFERVIELL--GI 121
Query: 484 ETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQ--ASL 541
+G LSGG+KQR+AI RA++ +P +LL+DE +ALD + + L++ A
Sbjct: 122 GHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF 181
Query: 542 GRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIGTHNDLINRIDGHYA 587
G L V+H L V R AD + V+++G + G ++ D +
Sbjct: 182 GIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWL 228
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.6 bits (227), Expect = 2e-20
Identities = 68/217 (31%), Positives = 111/217 (51%), Gaps = 14/217 (6%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI-----VRIDGVDI--RRLQ 425
L +L + + AL+G SG GKST + + R D + I ++ +G +I ++
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 426 LKWVRREMGLVSQEHALFGTSIKDNIMFG-KLDATMDEVIAAATAANAHNFIRQLPEGYE 484
L +R+E+G+V Q+ F S+ DN+ +G K+ D+ + + ++Q E
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEES---LKQAAIWKE 136
Query: 485 TK--VGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLG 542
TK + SGGQ+QRI IARA+ P ++LLDE TSALD S + ++ L +
Sbjct: 137 TKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQ 196
Query: 543 RTTLVVAHKLSTV-RNADLIAVVDNGCLVEIGTHNDL 578
T ++V H L R +D A + NG L+E G ++
Sbjct: 197 YTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233
|
Length = 251 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 3e-20
Identities = 60/205 (29%), Positives = 94/205 (45%), Gaps = 23/205 (11%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
IE V AYP AL S+ ++ G + L G SG GK+T++ L+ +G V
Sbjct: 2 IEFHNVSKAYPGGVAAL--HDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 1052 RVDGMDV---RELDVHWYRKHTALVSQE-PVIYAGNIRDNIVFG------KLDASENEVV 1101
R+ G DV R + R+ +V Q+ ++ + +N+ K + V
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119
Query: 1102 EAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSAL 1161
A R + + QLSGG++QR+AIARAI+ +P +LL DE T L
Sbjct: 120 AALRQVGLEHKADAFPE-----------QLSGGEQQRVAIARAIVNSPPLLLADEPTGNL 168
Query: 1162 DVQSEQVVQEALDRIMMGRTTIVVA 1186
D + + + L R+ TT++VA
Sbjct: 169 DPDLSERILDLLKRLNKRGTTVIVA 193
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 90.6 bits (226), Expect = 3e-20
Identities = 55/223 (24%), Positives = 102/223 (45%), Gaps = 19/223 (8%)
Query: 1001 YPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRE 1060
Y + S+ V G GL+G +G GK+T + ++ G+ ++G +R
Sbjct: 10 YKKGTK-PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRT 68
Query: 1061 LDVHWYRKHTALVSQEPVIYAG-NIRDNIVF-----GKLDASENEVVEAARAANAHEFIS 1114
D R+ Q ++ +R+++ F G + E VE +
Sbjct: 69 -DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVEL------LLRVL 121
Query: 1115 SLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALD 1174
L D LSGG ++++++A A+I P++LLLDE TS LD S + + + +
Sbjct: 122 GLTDKANKRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLIL 177
Query: 1175 RIMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQLT 1216
+ GR+ I+ H ++ + L D IA+++DG++ G+ +L
Sbjct: 178 EVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 3e-20
Identities = 73/234 (31%), Positives = 119/234 (50%), Gaps = 28/234 (11%)
Query: 355 IEFEHVKFSY-PSRP-DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDA--- 409
I+FE+V + Y P P + L + + +++ G VALVG +GSGKST L+Q F +A
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKST---LMQHF-NALLK 58
Query: 410 -DDGIVRIDGVDIR----RLQLKWVRREMGLVSQ--EHALFGTSIKDNIMFGKLD--ATM 460
G + I G I LK +R+++ LV Q E LF ++ ++ FG + +
Sbjct: 59 PSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSE 118
Query: 461 DEVIAAATAANAHNFIRQLPEGYETKVGERGAL-LSGGQKQRIAIARAIIKNPVILLLDE 519
DE A +++++ G + + LSGGQ +R+AIA + P IL LDE
Sbjct: 119 DEAKEKAL-----KWLKKV--GLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDE 171
Query: 520 ATSALDSES-ETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVE 571
+ LD E + ++Q D G T ++V H + V AD + V+++G L++
Sbjct: 172 PAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIK 225
|
Length = 287 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 97.2 bits (242), Expect = 4e-20
Identities = 63/207 (30%), Positives = 105/207 (50%), Gaps = 33/207 (15%)
Query: 371 IVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVR 430
++L+D ++ V GK ++GA+GSGKST + + ++ +G V W
Sbjct: 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV-------------WAE 720
Query: 431 REMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIR---------QLPE 481
R + V Q+ + +++ NI+F DE AA + +R QL
Sbjct: 721 RSIAYVPQQAWIMNATVRGNILF------FDE----EDAARLADAVRVSQLEADLAQLGG 770
Query: 482 GYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSE-SETLVQNALDQAS 540
G ET++GE+G LSGGQK R+++ARA+ N + LLD+ SALD+ E +V+ A
Sbjct: 771 GLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL 830
Query: 541 LGRTTLVVAHKLSTVRNADLIAVVDNG 567
G+T ++ H++ V AD + + +G
Sbjct: 831 AGKTRVLATHQVHVVPRADYVVALGDG 857
|
Length = 1560 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 4e-20
Identities = 64/214 (29%), Positives = 99/214 (46%), Gaps = 24/214 (11%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRR 431
+ D +L+V+ G+ V L+G +G+GK+T L+ FY G V G DI L
Sbjct: 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPH-RIA 77
Query: 432 EMGLVS--QEHALF-GTSIKDNIM------------FGKLDATMDEVIAAATAANAHNFI 476
+G+ Q LF G ++ +N+ G+ A +E A A F+
Sbjct: 78 RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV 137
Query: 477 RQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSAL-DSESETLVQNA 535
L E + G LS GQ++R+ IARA+ P +LLLDE + L E+E L +
Sbjct: 138 G-LGELADRPAGN----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELI 192
Query: 536 LD-QASLGRTTLVVAHKLSTVRN-ADLIAVVDNG 567
+ + G T L++ H + V AD I V++ G
Sbjct: 193 RELRDRGGVTILLIEHDMKLVMGLADRIVVLNYG 226
|
Length = 250 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 4e-20
Identities = 72/247 (29%), Positives = 116/247 (46%), Gaps = 37/247 (14%)
Query: 354 EIEFEHVKFSY-PSRP-DSIVLKDFNLKVKAGKSVALVGASGSGKSTAI----ALVQRFY 407
+I F+ V+ Y P + L D N+ + +G VA++G +GSGKST + L+Q
Sbjct: 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--- 58
Query: 408 DADDGIVRIDGVDI----RRLQLKWVRREMGLVSQ--EHALFGTSIKDNIMFGKLDATMD 461
G V I I + +LK +R+++G+V Q EH LF +++ +I FG ++ +
Sbjct: 59 -PTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVS 117
Query: 462 EVIAAATAANAHNFIRQLPEGYETKVGERGAL-LSGGQKQRIAIARAIIKNPVILLLDEA 520
E A A + G ++ R LSGGQ +R+AIA + P +L+LDE
Sbjct: 118 EEDAKQKAREMIELV-----GLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEP 172
Query: 521 TSALDSES--------ETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVE 571
T+ LD + L + G TT++V H + AD I V+ G +
Sbjct: 173 TAGLDPKGRKEMMEMFYKLHKEK------GLTTVLVTHSMEDAARYADQIVVMHKGTVFL 226
Query: 572 IGTHNDL 578
GT ++
Sbjct: 227 QGTPREI 233
|
Length = 290 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 5e-20
Identities = 60/228 (26%), Positives = 108/228 (47%), Gaps = 26/228 (11%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
+ + ++ F+Y +P F + G +VG SG GKST++ LI F + G V
Sbjct: 1 VRLDKIRFSYGEQP-----MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIYAG-NIRDNIVFG-----KLDASENEVVEAAR 1105
++G+DV + +++ QE ++A + N+ G KL A + + +E A
Sbjct: 56 LINGVDVTAAPPA--DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVAL 113
Query: 1106 AANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQS 1165
A + G +LSGG+RQR+A+AR ++R+ +LLLDE +ALD
Sbjct: 114 A----------RVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPAL 163
Query: 1166 EQVVQEALDRI--MMGRTTIVVAHRLNTIKKLDS-IALVADGRVVERG 1210
+ + + + T ++V H+ K+L + + +GR+ +G
Sbjct: 164 RAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.8 bits (225), Expect = 5e-20
Identities = 63/213 (29%), Positives = 102/213 (47%), Gaps = 20/213 (9%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV-----EQGSVRVDGMDVR--ELD 1062
L+ ++ L+G SGCGKST + + R D+ G+V + G ++ D
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 1063 VHWYRKHTALVSQEPVIYAGNIRDNIVFG------KLDASENEVVEAARAANAHEFISSL 1116
V RK +V Q+P + +I +N+++G K A +E VE + A +
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAA------I 134
Query: 1117 KDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRI 1176
D + E + LSGGQ+QR+ IAR + P ++LLDE TSALD S ++ L +
Sbjct: 135 WDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL 194
Query: 1177 MMGRTTIVVAHRLNTIKKL-DSIALVADGRVVE 1208
T I+V H ++ ++ D A G ++E
Sbjct: 195 RDQYTIILVTHSMHQASRISDKTAFFLTGNLIE 227
|
Length = 252 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 6e-20
Identities = 62/216 (28%), Positives = 103/216 (47%), Gaps = 24/216 (11%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK 1068
+L S+ + G L+G +GCGKST++ R + G+V + + L +
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLAR 76
Query: 1069 HTALVSQEPVIYAG-NIRD---------NIVFGKLDASENEVVEAARAANAHEFISSLKD 1118
AL+ Q + G +R+ ++G+L A +N V A I+ L D
Sbjct: 77 RLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTR---INHLAD 133
Query: 1119 GYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM- 1177
T+ LSGGQRQR +A + ++ ++LLDE T+ LD+ + QV L R +
Sbjct: 134 RRLTD-------LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDI-NHQVELMRLMRELN 185
Query: 1178 -MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGT 1211
G+T + V H LN + D + ++A+G V+ +GT
Sbjct: 186 TQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGT 221
|
Length = 255 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 6e-20
Identities = 62/218 (28%), Positives = 102/218 (46%), Gaps = 23/218 (10%)
Query: 1008 LVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDG--------MDVR 1059
L ++ +++ +G SGCGKST++ R D+ G RV+G +
Sbjct: 24 LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGF-RVEGKVTFHGKNLYAP 82
Query: 1060 ELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGK----LDASENEVVEAA--RAANAHEFI 1113
++D R+ +V Q+P + +I DNI +G +E+VE + +AA E
Sbjct: 83 DVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK 142
Query: 1114 SSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEAL 1173
LK G+ LSGGQ+QR+ IARAI P ++L+DE SALD S ++E +
Sbjct: 143 DKLKQS--------GLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELM 194
Query: 1174 DRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGT 1211
+ T I+V H + ++ + + + E G
Sbjct: 195 HELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGG 232
|
Length = 264 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 7e-20
Identities = 54/205 (26%), Positives = 98/205 (47%), Gaps = 14/205 (6%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
IE ++V + +L D + +V G+ A+VG +G+GK+T ++L+ + G V
Sbjct: 32 IELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88
Query: 415 RIDGVDIRRLQLKW-VRREMGLVS---QEHALFGTSIKDNIMFGKLDATM--DEVIAAAT 468
+ G + + + +R+ +GLVS E +++D ++ G + E + A
Sbjct: 89 TLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAED 148
Query: 469 AANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSES 528
A A + L G + LS G+++R+ IARA++K+P +L+LDE LD +
Sbjct: 149 LAAAQWLLELL--GAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIA 206
Query: 529 -ETLVQNALDQASL--GRTTLVVAH 550
E L+ + A+ L V H
Sbjct: 207 REQLLNRLEELAASPGAPALLFVTH 231
|
Length = 257 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.1 bits (223), Expect = 8e-20
Identities = 64/216 (29%), Positives = 113/216 (52%), Gaps = 12/216 (5%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD-VEQ----GSVRVDGMDV--RELD 1062
L S++ + L+G SGCGKST + + R D +E G ++ +G ++ ++D
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 1063 VHWYRKHTALVSQEPVIYAGNIRDNIVFG-KLDASENEVVEAARAANAHEFISSLKDGYE 1121
+ RK +V Q+P + ++ DN+ +G K+ +++ + R + + + K+ +
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKD 139
Query: 1122 TECGERGVQ-LSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGR 1180
+R Q SGGQ+QRI IARA+ P ++LLDE TSALD S ++E L +
Sbjct: 140 NL--DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQY 197
Query: 1181 TTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
T I+V H L ++ D A + +G ++E G ++
Sbjct: 198 TFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233
|
Length = 251 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 9e-20
Identities = 67/235 (28%), Positives = 116/235 (49%), Gaps = 39/235 (16%)
Query: 1006 DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD------VEQGSVRVDGMDVR 1059
D L+ SM++ + L+G SGCGKST + + R D ++ GSV +DG D+
Sbjct: 57 DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARID-GSVELDGQDIY 115
Query: 1060 E--LDVHWYRKHTALVSQEPVIYAGNIRDNIVFG-------------KL-----DASENE 1099
+ +++ RK +V Q P + +IR+NI +G +L +E+E
Sbjct: 116 QDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDE 175
Query: 1100 VVEAA--RAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEA 1157
+VE + +AA L D + + LSGGQ+QR+ IAR + +P ++L+DE
Sbjct: 176 LVERSLRQAA--------LWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEP 227
Query: 1158 TSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKL-DSIAL-VADGRVVERG 1210
SALD + +++ ++ + T +VV H + ++ D A+ + G +VE
Sbjct: 228 ASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYD 282
|
Length = 305 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 95.4 bits (237), Expect = 1e-19
Identities = 81/306 (26%), Positives = 145/306 (47%), Gaps = 45/306 (14%)
Query: 312 LPEL-KYFTEASIAASRIF----------DRIDRVPEIDGEDTKGLVLDEVRGEIEFEHV 360
LP + +AS++ R+ D I+R GE I +
Sbjct: 593 LPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNS----------ITVHNA 642
Query: 361 KFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVD 420
F++ +R L + G VA+VG G GKS+ ++ + D +G V + G
Sbjct: 643 TFTW-ARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSV 701
Query: 421 IRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGK-LDATMDEVIAAATAANAHNFIRQL 479
Q W++ + S+++NI+FGK L+ + + A A + L
Sbjct: 702 AYVPQQAWIQND-------------SLRENILFGKALNEKYYQQVLEACALLPD--LEIL 746
Query: 480 PEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSE-SETLVQNALDQ 538
P G T++GE+G LSGGQKQR+++ARA+ N I L D+ SA+D+ + + ++ +
Sbjct: 747 PSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGP 806
Query: 539 ASL--GRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQF 596
+ +T ++V H +S + D+I V+ G + E+G++ +L+ R DG +A+ R +
Sbjct: 807 EGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQR-DGAFAEFL---RTY 862
Query: 597 SCDDQE 602
+ D+Q+
Sbjct: 863 APDEQQ 868
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 1e-19
Identities = 63/209 (30%), Positives = 100/209 (47%), Gaps = 24/209 (11%)
Query: 369 DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDG--------VD 420
+ +K+ L + + A +G SG GKST + R D G R++G +
Sbjct: 22 SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPG-FRVEGKVTFHGKNLY 80
Query: 421 IRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGK----LDATMDEVIAAATAANAHNFI 476
+ VRR +G+V Q+ F SI DNI +G MDE++ + +
Sbjct: 81 APDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERS--------L 132
Query: 477 RQ--LPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQN 534
RQ L + + K+ + G LSGGQ+QR+ IARAI P ++L+DE SALD S ++
Sbjct: 133 RQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEE 192
Query: 535 ALDQASLGRTTLVVAHKLSTV-RNADLIA 562
+ + T ++V H + R +D+ A
Sbjct: 193 LMHELKEQYTIIIVTHNMQQAARVSDMTA 221
|
Length = 264 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.1 bits (223), Expect = 1e-19
Identities = 66/231 (28%), Positives = 115/231 (49%), Gaps = 15/231 (6%)
Query: 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
K E+ +++F Y L+ +M V L+G SGCGKST + R +D+ G+
Sbjct: 16 KSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGN 72
Query: 1051 -------VRVDGMDV--RELDVHWYRKHTALVSQEPVIYAGNIRDNIVFG-KLDASENEV 1100
+ D +++ E+D R ++V Q+P + +I +N+ +G ++ +
Sbjct: 73 HYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRS 132
Query: 1101 VEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSA 1160
+ R NA ++L D + G+ LSGGQ+QR+ IARA+ +P ILL DE TSA
Sbjct: 133 ILEERVENALRN-AALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSA 191
Query: 1161 LDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERG 1210
LD + ++E + + T ++V H + ++ D A + G ++E G
Sbjct: 192 LDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242
|
Length = 265 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 86.7 bits (216), Expect = 1e-19
Identities = 49/220 (22%), Positives = 86/220 (39%), Gaps = 63/220 (28%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+E + + L +L V+ G+ AL+G +G+GKST + ++ Y D G +
Sbjct: 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAH- 473
+DG ++ A+ A
Sbjct: 58 LVDGKEVS-----------------------------------------FASPRDARRAG 76
Query: 474 -NFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSAL-DSESETL 531
+ QL S G++Q + IARA+ +N +L+LDE T+AL +E E L
Sbjct: 77 IAMVYQL---------------SVGERQMVEIARALARNARLLILDEPTAALTPAEVERL 121
Query: 532 VQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLV 570
+ + G + ++H+L V AD + V+ +G +V
Sbjct: 122 FKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.2 bits (221), Expect = 1e-19
Identities = 69/232 (29%), Positives = 116/232 (50%), Gaps = 19/232 (8%)
Query: 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVE--- 1047
KIE+R + ++ VL ++E+ T L+G SG GKST++ + R ++
Sbjct: 3 KIEIRDLKVSFG---QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEA 59
Query: 1048 --QGSVRVDGMDVRELDVHWYRKHTALVSQEP-VIYAGNIRDNIVFG----KLDASENEV 1100
G V +DG D+ ++DV R+ +V Q P I +I +N+ G +L S+ E+
Sbjct: 60 RVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKEL 119
Query: 1101 VEAAR-AANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATS 1159
E R A + +KD + G +LSGGQ+QR+ IARA+ P +LL DE T+
Sbjct: 120 QERVRWALEKAQLWDEVKDRLDAPAG----KLSGGQQQRLCIARALAFQPEVLLADEPTA 175
Query: 1160 ALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERG 1210
LD ++ ++ + T ++V H ++ D +A + G++VE G
Sbjct: 176 NLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWG 227
|
Length = 250 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 2e-19
Identities = 57/232 (24%), Positives = 120/232 (51%), Gaps = 26/232 (11%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
I++ V F+YP+ + L+ S E+ G V ++G +G GKST+ ++ + G +
Sbjct: 8 IKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEP---VIYAGNIRDNIVFG----KLDASENE--VVE 1102
++DG+ + + ++ RK ++ Q P I A + D+I FG K+ + + + +
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGA-TVEDDIAFGLENKKVPPKKMKDIIDD 125
Query: 1103 AARAANAHEFISSLKDGYETECGERGVQ-LSGGQRQRIAIARAIIRNPTILLLDEATSAL 1161
A+ +++ ++ Q LSGGQ+QR+AIA + NP I++ DE+TS L
Sbjct: 126 LAKKVGMEDYL------------DKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSML 173
Query: 1162 DVQSEQVVQEALDRI--MMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGT 1211
D + ++ +++ + + +T I + H ++ D + + ++G+++ +G
Sbjct: 174 DPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGK 225
|
Length = 271 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.3 bits (220), Expect = 2e-19
Identities = 65/226 (28%), Positives = 107/226 (47%), Gaps = 34/226 (15%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKST----VIGLIQRFYDVEQGSVRVDGMDVRELDVH 1064
LR S+EV+ G V L+G++G GK+T ++GL++ G + DG D+ L H
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR----PRSGRIIFDGEDITGLPPH 73
Query: 1065 W-YRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYE-- 1121
R A V + R +F +L EN ++ A + L++ YE
Sbjct: 74 ERARLGIAYVPEG--------RR--IFPRLTVEENLLLGAYARRDKEAQERDLEEVYELF 123
Query: 1122 ----TECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM 1177
+R LSGG++Q +AIARA++ P +LLLDE + L + ++V+E + I
Sbjct: 124 PRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIK 180
Query: 1178 M-----GRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQLTH 1217
G T ++V ++ D ++ +GR+V GT A+L
Sbjct: 181 ELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226
|
Length = 237 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 2e-19
Identities = 65/220 (29%), Positives = 112/220 (50%), Gaps = 19/220 (8%)
Query: 362 FSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDI 421
FS + VLK+ NLK++ G+ +A+ G++GSGK++ + L+ + +G ++ G
Sbjct: 42 FSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRIS 101
Query: 422 RRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEV--IAAATAANAHNFIRQL 479
Q W+ + GT IK+NI+FG + DE + A I +
Sbjct: 102 FSSQFSWI------------MPGT-IKENIIFG---VSYDEYRYKSVVKACQLEEDITKF 145
Query: 480 PEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLV-QNALDQ 538
PE T +GE G LSGGQ+ RI++ARA+ K+ + LLD LD +E + ++ + +
Sbjct: 146 PEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCK 205
Query: 539 ASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDL 578
+T ++V K+ ++ AD I ++ G GT ++L
Sbjct: 206 LMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 2e-19
Identities = 53/208 (25%), Positives = 102/208 (49%), Gaps = 16/208 (7%)
Query: 1004 RPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDV 1063
+ +L S+++ G + L GK+G GK+T+ ++ GS+ ++G ++ +
Sbjct: 10 KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKE- 68
Query: 1064 HWYRKHTALVSQEP--VIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYE 1121
RK V Q+ ++ ++R+ ++ G + E A + +LK+ +
Sbjct: 69 --RRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGN--EQAETVLKDLDLYALKERHP 124
Query: 1122 TECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGR 1180
LSGGQ+QR+AIA A++ +L+ DE TS LD ++ + V E + + G+
Sbjct: 125 LS-------LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGK 177
Query: 1181 TTIVVAHRLNTIKKL-DSIALVADGRVV 1207
IV+ H + K+ D + L+A+G +V
Sbjct: 178 AVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 2e-19
Identities = 53/197 (26%), Positives = 83/197 (42%), Gaps = 50/197 (25%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
IE+ + A P ++L+ S E+KPG + + G SG GKS++ + + G +
Sbjct: 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI 58
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHE 1111
GM E + Q P + G +R+ +++ D
Sbjct: 59 ---GMPEGE--------DLLFLPQRPYLPLGTLREQLIYPWDDV---------------- 91
Query: 1112 FISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQE 1171
LSGG++QR+A AR ++ P + LDEATSALD +SE + +
Sbjct: 92 -------------------LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ 132
Query: 1172 ALDRIMMGRTTIVVAHR 1188
L +G T I V HR
Sbjct: 133 LLKE--LGITVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 2e-19
Identities = 54/225 (24%), Positives = 103/225 (45%), Gaps = 27/225 (12%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
++ + +Y + VL D +L VK G+ +G +G+GK+T + ++ D G +
Sbjct: 1 LKTNDLTKTYGKKR---VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI 57
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALFGT-SIKDNI-----MFGKLDATMDEVIAAAT 468
DG ++ R +G + + + + ++N+ + G +DEV+
Sbjct: 58 TFDGKSYQKNIEALRR--IGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVV- 114
Query: 469 AANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSES 528
G + ++ S G KQR+ IA A++ NP +L+LDE T+ LD +
Sbjct: 115 -------------GLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDG 161
Query: 529 ETLVQNAL-DQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVE 571
++ + G T L+ +H LS ++ AD I +++ G L+E
Sbjct: 162 IKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 2e-19
Identities = 62/220 (28%), Positives = 97/220 (44%), Gaps = 30/220 (13%)
Query: 1014 SMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVE----QGSVRVDGMDVRELDVHWYR-K 1068
++ +K G + LVG+SG GKS I G + +DG + L R +
Sbjct: 6 NLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLS---IRGR 62
Query: 1069 HTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAA-----NAHEFISSLKDGYETE 1123
H A + Q P R F L N +E R+ A I +
Sbjct: 63 HIATIMQNP-------RT--AFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLP 113
Query: 1124 CGERGV-----QLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM 1178
E + QLSGG QR+ IA A++ P L+ DE T+ LDV ++ V + L +
Sbjct: 114 DPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
Query: 1179 GRTT--IVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
T +++ H L + ++ D +A++ DGR+VERGT ++
Sbjct: 174 LFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEI 213
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 2e-19
Identities = 59/216 (27%), Positives = 103/216 (47%), Gaps = 11/216 (5%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRRE 432
+ N KV+ G+ +G +G+GK+T I ++ G R+ G D+ R + + VRR
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRS 67
Query: 433 MGLVSQEHALFG--TSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGER 490
+G+V Q ++ T ++ M G+L + + A A +L E + VG
Sbjct: 68 IGIVPQYASVDEDLTGRENLEMMGRLYG-LPKDEAEERAEELLELF-ELGEAADRPVGT- 124
Query: 491 GALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQ-ASLGRTTLVVA 549
SGG ++R+ IA ++I P +L LDE T+ LD + + + + G T L+
Sbjct: 125 ---YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTT 181
Query: 550 HKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRIDG 584
H + D IA++D+G ++ GT +L R+
Sbjct: 182 HYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGK 217
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.9 bits (220), Expect = 2e-19
Identities = 67/234 (28%), Positives = 113/234 (48%), Gaps = 28/234 (11%)
Query: 1006 DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRE----- 1060
D L ++++ + L+G SGCGKST + + R D+ +G ++++G + E
Sbjct: 19 DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEG-IKIEGNVIYEGKNIY 77
Query: 1061 ---LDVHWYRKHTALVSQEPVIYAGNIRDNIVFG------KLDASENEVVEAARAANAHE 1111
D+ R+ +V Q P + +I DNI +G K +E+VE + +A
Sbjct: 78 SNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSA-- 135
Query: 1112 FISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQE 1171
+ +KD T + LSGGQ+QR+ IAR + P ++L+DE TSALD S ++E
Sbjct: 136 LWNEVKDKLNTN----ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEE 191
Query: 1172 ALDRIMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQLTHMRGAFFN 1224
+ + T I+V H + ++ D A +G + E + +L FFN
Sbjct: 192 LIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL------FFN 239
|
Length = 254 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 2e-19
Identities = 62/207 (29%), Positives = 96/207 (46%), Gaps = 26/207 (12%)
Query: 1019 PGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQE-- 1076
PG+ GL+G +G GKST++ L+ + G+V + G+D+ L + ALV Q+
Sbjct: 26 PGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSD 85
Query: 1077 ---PVIYAGNIRDNIVFGK------LDASENEVVEAARAANAHEFISSLKD-GYETECGE 1126
P+ +RD + G+ A A +S L D T
Sbjct: 86 TAVPL----TVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMST---- 137
Query: 1127 RGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVA 1186
LSGG+RQR+ +ARA+ + P +LLLDE T+ LDV+++ + + T+V A
Sbjct: 138 ----LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAA 193
Query: 1187 -HRLNTIKKL-DSIALVADGRVVERGT 1211
H LN D + ++ GRVV G
Sbjct: 194 LHDLNLAASYCDHVVVLDGGRVVAAGP 220
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 2e-19
Identities = 70/219 (31%), Positives = 114/219 (52%), Gaps = 27/219 (12%)
Query: 1001 YPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVR- 1059
Y +P L ++ ++ G + ++G SGCGK+T++ LI F + GS+ +DG V
Sbjct: 11 YGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG 67
Query: 1060 ---ELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSL 1116
E V + ++ L+ N++DN+ FG A V + R AH+ +
Sbjct: 68 PGAERGVVF--QNEGLLPWR------NVQDNVAFGLQLAG---VEKMQRLEIAHQMLK-- 114
Query: 1117 KDGYETECGERGV-QLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDR 1175
K G E +R + QLSGGQRQR+ IARA+ NP +LLLDE ALD + + +Q L +
Sbjct: 115 KVGLE-GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLK 173
Query: 1176 IM--MGRTTIVVAHRLNTIKKLDS-IALVA--DGRVVER 1209
+ G+ +++ H + + + + L++ GRVVER
Sbjct: 174 LWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVER 212
|
Length = 255 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 2e-19
Identities = 58/215 (26%), Positives = 101/215 (46%), Gaps = 20/215 (9%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI-----VRIDGVDIR--RLQ 425
L D + + + AL+G SG GKST + R D G + +G +I
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 426 LKWVRREMGLVSQEHALFGTSIKDNIMFG------KLDATMDEVIAAATAANAHNFIRQL 479
+ +RR++G+V Q F SI +N+ +G K T+D ++ + A L
Sbjct: 82 VVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAA------L 135
Query: 480 PEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQA 539
+ + ++ + LSGGQ+QR+ IAR + NP ++L+DE SALD + +++ ++
Sbjct: 136 WDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDL 195
Query: 540 SLGRTTLVVAHKLS-TVRNADLIAVVDNGCLVEIG 573
T ++V H + R +D + G L+E
Sbjct: 196 KKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFD 230
|
Length = 253 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 3e-19
Identities = 58/218 (26%), Positives = 111/218 (50%), Gaps = 5/218 (2%)
Query: 990 GKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQG 1049
G++ ++ + Y +A VL S + PG VGL+G++G GKST++ R + E G
Sbjct: 1 GQMTVKDLTAKYTEGGNA-VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-G 58
Query: 1050 SVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNI-VFGKLDASENEVVEAARAAN 1108
+++DG+ + + +RK ++ Q+ I++G R N+ +GK S+ E+ + A
Sbjct: 59 DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKW--SDEEIWKVAEEVG 116
Query: 1109 AHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQV 1168
I + + G LS G +Q + +AR+++ ILLLDE ++ LD + QV
Sbjct: 117 LKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV 176
Query: 1169 VQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRV 1206
+++ L + T I+ HR+ + + ++ + +V
Sbjct: 177 IRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKV 214
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.2 bits (223), Expect = 3e-19
Identities = 62/226 (27%), Positives = 108/226 (47%), Gaps = 9/226 (3%)
Query: 993 EMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV-----E 1047
E+R +F Y +R VL ++++K +G SGCGKST + + + D+
Sbjct: 82 EIRNFNFWYMNRTKH-VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140
Query: 1048 QGSVRVDGMDVRELDVHWY--RKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAAR 1105
+G + G + R + R +V Q+P + +I DN+ +G + N+ +
Sbjct: 141 EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEK 200
Query: 1106 AANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQS 1165
++L D + + + G LSGGQ+QR+ IARAI P +LL+DE TSALD +
Sbjct: 201 IVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIA 260
Query: 1166 EQVVQEALDRIMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERG 1210
++E + + + I+V H + +++ D G + E G
Sbjct: 261 TAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306
|
Length = 329 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.9 bits (220), Expect = 3e-19
Identities = 63/216 (29%), Positives = 104/216 (48%), Gaps = 20/216 (9%)
Query: 1014 SMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV-----EQGSVRVDGMDV--RELDVHWY 1066
SM+++ L+G SGCGKST + I R D+ +G + +G+++ ++V
Sbjct: 41 SMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNL 100
Query: 1067 RKHTALVSQEPVIYAGNIRDNIVFGKLDASE------NEVVEAARAANAHEFISSLKDGY 1120
R+ +V Q+P + +I +NI A E +E+VE + A L D
Sbjct: 101 RREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAA------LWDEV 154
Query: 1121 ETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGR 1180
+ + LSGGQ+QR+ IAR + P +LLLDE SALD S ++E + +
Sbjct: 155 KDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEY 214
Query: 1181 TTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
+ I+V H + ++ D A +G +VE Q+
Sbjct: 215 SIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250
|
Length = 268 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.2 bits (221), Expect = 3e-19
Identities = 65/206 (31%), Positives = 103/206 (50%), Gaps = 22/206 (10%)
Query: 1025 LVGKSGCGKSTVIGLIQRFYDV-----EQGSVRVDGMDV--RELDVHWYRKHTALVSQEP 1077
++G SGCGKST + I R D+ G++ DG D+ + D RK +V Q+P
Sbjct: 70 IIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129
Query: 1078 VIYAGNIRDNIVFG-KLDASEN-----EVVEAA-RAANAHEFISSLKDGYETECGERGVQ 1130
+ +I DNI +G +L + E+VE + R A +L D + +
Sbjct: 130 NPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKA-------ALWDEVSDRLDKNALG 182
Query: 1131 LSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLN 1190
LSGGQ+QR+ +AR + P ILLLDE TSALD ++ +++ + + T ++V H +
Sbjct: 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQ 242
Query: 1191 TIKKL-DSIALVADGRVVERGTYAQL 1215
++ D +G +VE AQL
Sbjct: 243 QASRVSDYTMFFYEGVLVEHAPTAQL 268
|
Length = 286 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 5e-19
Identities = 69/232 (29%), Positives = 116/232 (50%), Gaps = 24/232 (10%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDV--RELDVHWYR 1067
L ++E++ G VGL+G +G GKST+I + G + +DG+D+ +++ + R
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
Query: 1068 KHTALVSQEP--VIYAGNIRDNIVFG--KLDASENEVVEAARAANAHEFISSLKDGYETE 1123
K LV Q P ++ I +I FG L SE E+ + A ++ + YE
Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRA-----MNIVGLDYEDY 137
Query: 1124 CGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQ----VVQEALDRIMMG 1179
+ +LSGGQ++R+AIA + P IL+LDE T+ LD + ++E M
Sbjct: 138 KDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNM- 196
Query: 1180 RTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQLTHMRGAFFNLATLQS 1230
T I+V+H + + KL D I ++ G+ +GT ++ F + TL+S
Sbjct: 197 -TIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV------FKEVETLES 241
|
Length = 287 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (218), Expect = 5e-19
Identities = 69/254 (27%), Positives = 123/254 (48%), Gaps = 44/254 (17%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
I+ ++ F Y ++ +L+ ++++ K A++G SG GKST + + R + + V
Sbjct: 8 IKVNNLSFYYDTQK---ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELE-SEV 63
Query: 415 RIDG--------VDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFG----------KL 456
R++G + RR+ L +RR++ +V + LF S+ DN+ +G ++
Sbjct: 64 RVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEI 123
Query: 457 DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILL 516
D ++ + A L + + K+ + LSGGQ+QR+ IARA+ P +LL
Sbjct: 124 DDIVESALKDA----------DLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLL 173
Query: 517 LDEATSALDSES----ETLVQNALDQASLGRTTLVVAHKLSTV-RNADLIAVVDN----- 566
+DE LD + E+L+Q+ ++ L T ++V+H L V R +D A
Sbjct: 174 MDEPCFGLDPIASMKVESLIQSLRLRSEL--TMVIVSHNLHQVSRLSDFTAFFKGNENRI 231
Query: 567 GCLVEIGTHNDLIN 580
G LVE G + N
Sbjct: 232 GQLVEFGLTKKIFN 245
|
Length = 261 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 5e-19
Identities = 58/200 (29%), Positives = 95/200 (47%), Gaps = 41/200 (20%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
I E++ +Y RP +L++ +L + G+ + LVG +G+GKST + ++ + D G V
Sbjct: 4 ITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALFGT-SIKDNIM--FGKLDATMDEVIAAATAAN 471
+R +G +SQE L ++ D ++ FG+L + E + A A
Sbjct: 61 TRPK-GLR----------VGYLSQEPPLDPEKTVLDYVIEGFGELRELLAE-LEEAYALL 108
Query: 472 AHNFIRQLPE---------GYETKVGERGAL--------------LSGGQKQRIAIARAI 508
A L E G+ + AL LSGG ++R+A+ARA+
Sbjct: 109 ADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARAL 168
Query: 509 IKNPVILLLDEATSALDSES 528
++ P +LLLDE T+ LD ES
Sbjct: 169 LEEPDLLLLDEPTNHLDLES 188
|
Length = 530 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.8 bits (217), Expect = 6e-19
Identities = 61/229 (26%), Positives = 117/229 (51%), Gaps = 30/229 (13%)
Query: 985 LQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFY 1044
+ K+ I++ + F Y ++ +L SME+ ++G SGCGKST + + R
Sbjct: 1 MSKLIPAIKVNNLSFYYDTQK---ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMN 57
Query: 1045 DVEQGSVRVDG--------MDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFG----- 1091
++E VRV+G + R ++++ R+ ++V +P ++ ++ DN+ +G
Sbjct: 58 ELE-SEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVG 116
Query: 1092 ---KLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRN 1148
KL+ +++VE+A + L D + + + + LSGGQ+QR+ IARA+
Sbjct: 117 WRPKLEI--DDIVESALKD------ADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVK 168
Query: 1149 PTILLLDEATSALDVQSEQVVQEALD--RIMMGRTTIVVAHRLNTIKKL 1195
P +LL+DE LD + V+ + R+ T ++V+H L+ + +L
Sbjct: 169 PKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRL 217
|
Length = 261 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 6e-19
Identities = 70/220 (31%), Positives = 114/220 (51%), Gaps = 12/220 (5%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELD---VHW 1065
VL S+ ++ G +VGL+G+SGCGKST+ L+ QG+V G D+ +LD
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 1066 YRKHTALVSQEPVIYAGNIRDNI--VFGKLDASENEVVEAARAANAHEFISSLKDGYETE 1123
+R+ LV Q+ A N R + + G+ + E+ + A E + + G +E
Sbjct: 86 FRRDVQLVFQD-SPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMV--GLRSE 142
Query: 1124 CGER-GVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GR 1180
++ QLSGGQ QRI IARA+ P +++LDEA S LD+ + V+ E L ++ G
Sbjct: 143 DADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGT 202
Query: 1181 TTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQLTHMR 1219
+ + H L ++ +A++ G++VE AQL +
Sbjct: 203 AYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSFK 242
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 7e-19
Identities = 66/224 (29%), Positives = 108/224 (48%), Gaps = 23/224 (10%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAD-----DGIVRIDGVDI--RRLQ 425
L +L + AL+G SGSGKST + + R D + G + +G +I R
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 426 LKWVRREMGLVSQEHALFGTSIKDNIMFG------KLDATMDEVIAAA-TAANAHNFIRQ 478
+R+E+G+V Q+ F SI +N+++G K +DE + + A+ + ++
Sbjct: 81 TVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD 140
Query: 479 LPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQ 538
+++ +G LSGGQ+QR+ IAR + +P I+LLDE TSALD S ++ L
Sbjct: 141 --RLHDSALG-----LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLG 193
Query: 539 ASLGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIG-THNDLIN 580
T L+V + R +D +G L+E T +N
Sbjct: 194 LKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMN 237
|
Length = 252 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 8e-19
Identities = 61/225 (27%), Positives = 99/225 (44%), Gaps = 21/225 (9%)
Query: 1006 DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDV-RELDVH 1064
D + + +V+ G G +G +G GK+T I ++ G+ RV G DV RE
Sbjct: 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRK- 63
Query: 1065 WYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAA----RAANAHEFISSLKDGY 1120
R+ +V Q + L EN + A E L + +
Sbjct: 64 -VRRSIGIVPQYASVDE----------DLTGRENLEMMGRLYGLPKDEAEERAEELLELF 112
Query: 1121 E-TECGERGV-QLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM- 1177
E E +R V SGG R+R+ IA ++I P +L LDE T+ LD ++ + + + + +
Sbjct: 113 ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE 172
Query: 1178 MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQLTHMRGA 1221
G T ++ H + KL D IA++ GR++ GT +L G
Sbjct: 173 EGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGK 217
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.4 bits (216), Expect = 8e-19
Identities = 73/239 (30%), Positives = 114/239 (47%), Gaps = 25/239 (10%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
IE E++ Y D L + N+K+ AL+G SG GKST + + R D +GI
Sbjct: 8 IETENLNLFYT---DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGI- 63
Query: 415 RIDGVDI--------RRLQLKWVRREMGLVSQEHALFGTSIKDNIMFG------KLDATM 460
+I+G I + +RR++G+V Q F SI DNI +G K +
Sbjct: 64 KIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKL 123
Query: 461 DEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEA 520
DE++ + +A L + K+ LSGGQ+QR+ IAR + P ++L+DE
Sbjct: 124 DEIVEQSLKKSA------LWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEP 177
Query: 521 TSALDSESETLVQNALDQASLGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIGTHNDL 578
TSALD S ++ + T ++V H + R +D A NGC+ E + ++L
Sbjct: 178 TSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236
|
Length = 254 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.4 bits (216), Expect = 8e-19
Identities = 68/252 (26%), Positives = 124/252 (49%), Gaps = 32/252 (12%)
Query: 985 LQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFY 1044
Q++ I+++ + F Y + + + SM++ ++G SGCGKST I + R
Sbjct: 1 NQQLIPAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRIS 57
Query: 1045 DVEQGSVRVDGM---------DVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDA 1095
++E G V+V+G+ D R ++++ R+ +V Q P + +I +N+ +G +
Sbjct: 58 ELE-GPVKVEGVVDFFGQNIYDPR-ININRLRRQIGMVFQRPNPFPMSIYENVAYGVRIS 115
Query: 1096 SEN------EVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNP 1149
++ E+VE+A A L + + + + LSGGQ+QR+ IARA+ P
Sbjct: 116 AKLPQADLDEIVESALKGAA------LWQEVKDKLNKSALGLSGGQQQRLCIARALAIKP 169
Query: 1150 TILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKL-DSIALVAD----- 1203
+LL+DE SALD + V+E + + T +V H + ++ D A +
Sbjct: 170 KVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRI 229
Query: 1204 GRVVERGTYAQL 1215
G++VE G Q+
Sbjct: 230 GQMVEFGVTTQI 241
|
Length = 259 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 8e-19
Identities = 69/234 (29%), Positives = 116/234 (49%), Gaps = 25/234 (10%)
Query: 355 IEFEHVKFSYPSRPDS---IVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADD 411
I+ ++V + Y S +S + L D NL+VK G+ + ++G +GSGKST + +
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 412 GIVRIDGVDIRRLQLKW-VRREMGLVSQ--EHALFGTSIKDNIMFG--KLDATMDE---- 462
G V +DG+D + W +R + G+V Q ++ + T +++++ FG L +E
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER 124
Query: 463 VIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATS 522
V + + + R P LLSGGQKQR+AIA + P ++ DE T+
Sbjct: 125 VDESLKKVGMYEYRRHAPH-----------LLSGGQKQRVAIAGILAMRPECIIFDEPTA 173
Query: 523 ALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGT 574
LD V N + + + G T +++ H + AD I V+D+G +V GT
Sbjct: 174 MLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGT 227
|
Length = 280 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 9e-19
Identities = 62/213 (29%), Positives = 104/213 (48%), Gaps = 26/213 (12%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVR---ELDVHW 1065
VL ++E+ PG V L G SG GK+T++ LI V++GS++V G ++ E ++
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 1066 YRKHTALVSQEPVIYAGNIRDNIVFGKLDASEN---------EVVEAARAANAHEFISSL 1116
R++ + Q A N+ G L A +N + A + ++
Sbjct: 80 LRRNIGYIFQ-----AHNL-----LGFLTARQNVQMALELQPNLSYQEARERARAMLEAV 129
Query: 1117 KDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRI 1176
G LSGGQ+QR+AIARA++ P ++L DE T+ALD +S + V E + ++
Sbjct: 130 --GLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKL 187
Query: 1177 M--MGRTTIVVAHRLNTIKKLDSIALVADGRVV 1207
G T ++V H + D I + DG+++
Sbjct: 188 AREQGCTILIVTHDNRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 1e-18
Identities = 67/237 (28%), Positives = 115/237 (48%), Gaps = 23/237 (9%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
IE E + F Y + LK +L + G AL+G +G+GKST + + Y G V
Sbjct: 5 IEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQ--EHALFGTSIKDNIMFGKLDATMDE------VIAA 466
++ G ++ KWVR ++GLV Q + +F +++ D++ FG ++ +D+ V A
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122
Query: 467 ATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDS 526
A +F + P Y LS GQK+R+AIA + +P +++LDE + LD
Sbjct: 123 LKAVRMWDFRDKPP--YH---------LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP 171
Query: 527 ESETLVQNALDQASLGRTTLVVA-HKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581
+ + LD+ T++VA H + AD + V+ G ++ G + L +
Sbjct: 172 RGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDE 228
|
Length = 274 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.7 bits (214), Expect = 1e-18
Identities = 71/242 (29%), Positives = 113/242 (46%), Gaps = 23/242 (9%)
Query: 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAD--- 410
+I+ V F Y VLK+ N+ + A++G SG GKST + + R D
Sbjct: 4 KIKIRGVNFFYHKHQ---VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 411 --DGIVRIDGVDIRRLQLKWV--RREMGLVSQEHALFGTSIKDNIMFG------KLDATM 460
+G V +D +I L V R+ +G+V Q+ F SI DN+ FG + +
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRL 120
Query: 461 DEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEA 520
DEV+ + A L + + + + G LSGGQ+QR+ IAR + P ++L+DE
Sbjct: 121 DEVVEKSLRQAA------LWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEP 174
Query: 521 TSALDSESETLVQNALDQASLGRTTLVVAHKL-STVRNADLIAVVDNGCLVEIGTHNDLI 579
SALD S ++ + + T +V H + R +D + G LVE G ++
Sbjct: 175 CSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234
Query: 580 NR 581
+R
Sbjct: 235 SR 236
|
Length = 251 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 1e-18
Identities = 72/221 (32%), Positives = 112/221 (50%), Gaps = 29/221 (13%)
Query: 375 DFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAD-----DGIVRIDGVDI--RRLQLK 427
D NL ++ A +G SG GKST + + R ++ +G V +DG D+ +
Sbjct: 22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81
Query: 428 WVRREMGLVSQEHALFGT-SIKDNIMFG-KLD-----ATMDEVIAAA-TAANAHNFIRQL 479
VRR +G+V Q F T SI+DN++ G KL+ +DE++ + AN N ++
Sbjct: 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKD- 140
Query: 480 PEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQA 539
++ + G LSGGQ+QR+ IARAI P +LL+DE SALD S +++ +++
Sbjct: 141 ------RLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL 194
Query: 540 SLGRTTLVVAHKL-STVRNAD------LIAVVDNGCLVEIG 573
T ++V H + R +D L A G LVEI
Sbjct: 195 KQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEID 235
|
Length = 258 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 1e-18
Identities = 53/214 (24%), Positives = 99/214 (46%), Gaps = 8/214 (3%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVE-----QGSVRVDGMDVRE--LD 1062
L ++ + L+G SGCGKST++ R D+ G + +G ++ + D
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 1063 VHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYET 1122
V R+ +V Q P + +I +N+ +G E ++L D +
Sbjct: 82 VVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKD 141
Query: 1123 ECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTT 1182
+ + LSGGQ+QR+ IAR + NP ++L+DE SALD + +++ ++ + T
Sbjct: 142 RLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTV 201
Query: 1183 IVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
I+V H + ++ D + G+++E Q+
Sbjct: 202 IIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235
|
Length = 253 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.3 bits (216), Expect = 1e-18
Identities = 61/215 (28%), Positives = 105/215 (48%), Gaps = 20/215 (9%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDA-----DDGIVRIDGVDI--RRLQ 425
+ D ++ ++ AL+G SG GKST + + R D +G + +G++I +
Sbjct: 37 VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96
Query: 426 LKWVRREMGLVSQEHALFGTSIKDNIMFG------KLDATMDEVIAAATAANAHNFIRQL 479
+ +RRE+G+V Q+ F SI +NI + + +DE++ + A L
Sbjct: 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAA------L 150
Query: 480 PEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQA 539
+ + ++ LSGGQ+QR+ IAR + P +LLLDE SALD S ++ + +
Sbjct: 151 WDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITEL 210
Query: 540 SLGRTTLVVAHKL-STVRNADLIAVVDNGCLVEIG 573
+ ++V H + +R +D A NG LVE
Sbjct: 211 KEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYD 245
|
Length = 268 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 1e-18
Identities = 55/174 (31%), Positives = 89/174 (51%), Gaps = 28/174 (16%)
Query: 1001 YPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKST----VIGLIQRFYDVEQGSVRVDGM 1056
Y R V+ S+EV G VGL+G +G GK+T ++GL++ + G + +D
Sbjct: 14 YKKRK---VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR----PDSGKILLDDE 66
Query: 1057 DVRELDVHWYRKHTAL--VSQEPVIYAG-NIRDNIVFGKLDASENEVVEAARAANA---- 1109
D+ +L +H R + + QE I+ + DNI+ L+ E ++ +A R
Sbjct: 67 DITKLPMH-KRARLGIGYLPQEASIFRKLTVEDNIM-AVLEIREKDLKKAERKEELDALL 124
Query: 1110 HEF-ISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALD 1162
EF I+ L+D + LSGG+R+R+ IARA+ NP +LLDE + +D
Sbjct: 125 EEFHITHLRD-------SKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVD 171
|
Length = 243 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 1e-18
Identities = 68/226 (30%), Positives = 100/226 (44%), Gaps = 36/226 (15%)
Query: 367 RPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRL-- 424
VL + +L +K+G++VAL+G SG GKST L+ G V G + +L
Sbjct: 22 HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81
Query: 425 -QLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDA--TMDEVIA-----------AATAA 470
Q K RR++ +V Q+ ++ T+ E+I A A
Sbjct: 82 AQRKAFRRDIQMVFQDS------------ISAVNPRKTVREIIREPLRHLLSLDKAERLA 129
Query: 471 NAHNFIRQ--LPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDS-- 526
A +R L + K R LSGGQ QR+ +ARA+ P +L+LDEA S LD
Sbjct: 130 RASEMLRAVDLDDSVLDK---RPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVL 186
Query: 527 ESETLVQNALDQASLGRTTLVVAHKLSTV-RNADLIAVVDNGCLVE 571
++ + Q G L + H L V R + V+DNG +VE
Sbjct: 187 QAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232
|
Length = 268 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 1e-18
Identities = 73/241 (30%), Positives = 115/241 (47%), Gaps = 50/241 (20%)
Query: 1004 RPDALV--LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVREL 1061
+P+ LV L S ++ G ++ +VG+SGCGKST+ L+ G + G D+ +
Sbjct: 23 KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82
Query: 1062 D---VHWYRKHTALVSQEPVIYAG-NIRDNI---------VFGKLDASENEVVEAARAAN 1108
D R+ +V Q P Y N R + + L A+E R
Sbjct: 83 DPEAQKLLRQKIQIVFQNP--YGSLNPRKKVGQILEEPLLINTSLSAAE-------RREK 133
Query: 1109 AHEFISSLKDGYETECGERGVQL-SGGQRQRIAIARAIIRNPTILLLDEATSALDVQSE- 1166
A ++ K G E +R + SGGQRQRIAIARA++ +P +++ DE SALDV +
Sbjct: 134 ALAMMA--KVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQA 191
Query: 1167 QVVQEALDRIM-----MGRTTIVVAHRLNTIKKLDSIALVAD-------GRVVERGTYAQ 1214
QV L+ +M +G + + ++H L+ ++ +AD GR VE+GT Q
Sbjct: 192 QV----LNLMMDLQQELGLSYVFISHDLSVVEH------IADEVMVMYLGRCVEKGTKEQ 241
Query: 1215 L 1215
+
Sbjct: 242 I 242
|
Length = 327 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 1e-18
Identities = 52/210 (24%), Positives = 95/210 (45%), Gaps = 13/210 (6%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
++++ V + +L S ++ G + G SGCGKST++ ++ G++
Sbjct: 8 LQLQNVGYLAGDAK---ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHE 1111
+G D+ L YR+ + +Q P ++ + DN++F + A +
Sbjct: 65 LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIF-PWQIRNQQPDPAIFLDDLER 123
Query: 1112 FISSLKDGYETECGERGV-QLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQ 1170
F + + +LSGG++QRI++ R + P +LLLDE TSALD ++ V
Sbjct: 124 F------ALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVN 177
Query: 1171 EALDRIMMGRTTIV--VAHRLNTIKKLDSI 1198
E + R + + V V H + I D +
Sbjct: 178 EIIHRYVREQNIAVLWVTHDKDEINHADKV 207
|
Length = 225 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 1e-18
Identities = 67/221 (30%), Positives = 107/221 (48%), Gaps = 22/221 (9%)
Query: 369 DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAD-----DGIVRIDGVDIRR 423
+ V+K +LK+ AL+G SG GKST + R + + +G VR+ G +I
Sbjct: 16 SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYS 75
Query: 424 LQLK--WVRREMGLVSQEHALF-GTSIKDNIMFG-------KLDATMDEVIAAATAANAH 473
+ VRRE+G+V Q F +I DN+ G K +DE + A A
Sbjct: 76 PDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAA- 134
Query: 474 NFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQ 533
L + + ++ + + LSGGQ+QR+ IARA+ P ILL+DE T+ +D ++
Sbjct: 135 -----LWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIE 189
Query: 534 NALDQASLGRTTLVVAHK-LSTVRNADLIAVVDNGCLVEIG 573
L + T ++V H R +D +A + G L+E+G
Sbjct: 190 ELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVG 230
|
Length = 253 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.0 bits (215), Expect = 1e-18
Identities = 72/220 (32%), Positives = 106/220 (48%), Gaps = 23/220 (10%)
Query: 356 EFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVR 415
E E VK Y + L D +LK+ A K +A +G SG GKST + R D G +
Sbjct: 22 EVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPG-AK 77
Query: 416 IDGVDIRRLQLKW--------VRREMGLVSQEHALFGTSIKDNIMFGK----LDATMDEV 463
++G + R + + +RR++G+V Q F SI +NI F +DE+
Sbjct: 78 VEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDEL 137
Query: 464 IAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSA 523
+ + A + E + K+ E+G LSGGQ+QR+ IARAI P +LL+DE SA
Sbjct: 138 VEDSLRRAA------IWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSA 191
Query: 524 LDSESETLVQNALDQASLGRTTLVVAHKLSTV-RNADLIA 562
LD S V+ + T ++V H + R AD A
Sbjct: 192 LDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTA 231
|
Length = 274 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.9 bits (220), Expect = 2e-18
Identities = 66/214 (30%), Positives = 112/214 (52%), Gaps = 15/214 (7%)
Query: 1007 ALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELD---- 1062
+L ++ S+ ++ G ++G SG GKST++ L+ R + +G V +DG+D+ ++
Sbjct: 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAEL 100
Query: 1063 VHWYRKHTALVSQE-PVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKD-GY 1120
RK A+V Q ++ + DN FG E+ + + +L+ G
Sbjct: 101 REVRRKKIAMVFQSFALMPHMTVLDNTAFGM------ELAGINAEERREKALDALRQVGL 154
Query: 1121 ETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMG- 1179
E +LSGG RQR+ +ARA+ NP ILL+DEA SALD +Q+ L ++
Sbjct: 155 ENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKH 214
Query: 1180 -RTTIVVAHRLNTIKKL-DSIALVADGRVVERGT 1211
RT + ++H L+ ++ D IA++ +G VV+ GT
Sbjct: 215 QRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGT 248
|
Length = 400 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.2 bits (213), Expect = 2e-18
Identities = 69/230 (30%), Positives = 106/230 (46%), Gaps = 26/230 (11%)
Query: 371 IVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI-----VRIDGVDI--RR 423
+ ++D ++ ++ + +G SG GKST + + R D G V G D+ +
Sbjct: 22 MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKG 81
Query: 424 LQLKWVRREMGLVSQEHALFGTSIKDNIMFG----KLDATMDEVIAAATAANAHNFIRQL 479
+ VRR +G+V Q+ F SI DN+ FG + + + + A A L
Sbjct: 82 VDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAA------L 135
Query: 480 PEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQA 539
+ + K+ G LSGGQ+QR+ IARAI P +LLLDE SALD + V+ + +
Sbjct: 136 WDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVEL 195
Query: 540 SLGRTTLVVAHKL-STVRNADLIAV--VD------NGCLVEIGTHNDLIN 580
T +V H + +R AD A VD G LVE+G +
Sbjct: 196 KKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQ 245
|
Length = 261 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 2e-18
Identities = 60/200 (30%), Positives = 103/200 (51%), Gaps = 18/200 (9%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
++ H+ Y +P L+D NL +++G+ + ++G SG GK+T + L+ F G +
Sbjct: 2 LQISHLYADYGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI 58
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALFG-TSIKDNIMFGKLDATMDEVIAAATAANAH 473
+DG + + E G+V Q L +++DN+ FG A +++ AH
Sbjct: 59 TLDGKPV-----EGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEK---MQRLEIAH 110
Query: 474 NFIRQLP-EGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLV 532
++++ EG E + LSGGQ+QR+ IARA+ NP +LLLDE ALD+ + +
Sbjct: 111 QMLKKVGLEGAEKR---YIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQM 167
Query: 533 QNALDQ--ASLGRTTLVVAH 550
Q L + G+ L++ H
Sbjct: 168 QTLLLKLWQETGKQVLLITH 187
|
Length = 255 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 3e-18
Identities = 69/237 (29%), Positives = 107/237 (45%), Gaps = 40/237 (16%)
Query: 992 IEMRRVDFAYPSRPDAL-VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
+E++ + +YPS + + VL+ S+++ G V +VG SG GKST++ ++ G+
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 1051 VRVDGMDVRELD----VHWYRKHTALVSQE---------------PVIYAGNIRDNIVFG 1091
RV G DV LD R+H + Q P +YAG R
Sbjct: 65 YRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLER------ 118
Query: 1092 KLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTI 1151
R A E + L G E + QLSGGQ+QR++IARA++ +
Sbjct: 119 -----------KQRLLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQV 165
Query: 1152 LLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKKLDSIALVADGRVV 1207
+L DE T ALD S + V L ++ G T I+V H + + + + DG +V
Sbjct: 166 ILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIV 222
|
Length = 648 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.2 bits (213), Expect = 3e-18
Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 23/187 (12%)
Query: 1023 VGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDG-MDVRELDVH-------WYRKHTALVS 1074
+ +G SGCGKST++ R D+ G+ +V+G + R+ +++ R+ +V
Sbjct: 49 IAFIGPSGCGKSTLLRCFNRMNDLIPGA-KVEGRLLYRDRNIYDSQINSVKLRRQVGMVF 107
Query: 1075 QEPVIYAGNIRDNIVFGK----LDASENEVVEAA--RAANAHEFISSLKDGYETECGERG 1128
Q P + +I +NI F + +E+VE + RAA E LK E+G
Sbjct: 108 QRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLK--------EKG 159
Query: 1129 VQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHR 1188
LSGGQ+QR+ IARAI P +LL+DE SALD S + V+E + T I+V H
Sbjct: 160 TALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHN 219
Query: 1189 LNTIKKL 1195
+ ++
Sbjct: 220 MQQASRV 226
|
Length = 274 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 3e-18
Identities = 66/237 (27%), Positives = 112/237 (47%), Gaps = 20/237 (8%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
I+ + Y + L D L G+++ L+G SG+GKS+ + ++ G +
Sbjct: 3 IQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 415 RIDG--VDIRRL----QLKWVRREMGLVSQEHALFG--TSIKDNIMFGKLDATMDEVIAA 466
I G D + ++ +RR +G+V Q++ L+ T ++ I + + A
Sbjct: 60 NIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQAL 119
Query: 467 ATAANAHNFIRQLPEGYETKVGERGAL-LSGGQKQRIAIARAIIKNPVILLLDEATSALD 525
A A +R +R L LSGGQ+QR+AIARA++ P +LL DE T+ALD
Sbjct: 120 ARAEKLLKRLRL------KPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173
Query: 526 SE-SETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580
E + +V + A G T ++V H++ R A + ++NG +VE G +
Sbjct: 174 PEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTE 230
|
Length = 242 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.9 bits (212), Expect = 3e-18
Identities = 67/214 (31%), Positives = 100/214 (46%), Gaps = 7/214 (3%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV-----EQGSVRVDGMDVREL-D 1062
VL Q SM L+G +G GK+T + + R D G V + G + D
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 1063 VHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYET 1122
V +R+ ++ Q P + +I DN++ G E A A L D +
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKD 155
Query: 1123 ECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTT 1182
+ +LSGGQ+Q + +AR + NP +LLLDE TSALD + + ++E + + T
Sbjct: 156 RLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTV 215
Query: 1183 IVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
I+V H L ++ D AL DGR+VE G QL
Sbjct: 216 IIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249
|
Length = 276 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.4 bits (211), Expect = 4e-18
Identities = 69/214 (32%), Positives = 106/214 (49%), Gaps = 9/214 (4%)
Query: 369 DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI-----VRIDGVDIRR 423
D +K+ NL V+ G AL+G SG GK+T + + R +D G + +DG DI
Sbjct: 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYG 75
Query: 424 LQLKWV--RREMGLVSQEHALFGT-SIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLP 480
++ V RR +G+V Q+ F T S+ DN++ G A + + A L
Sbjct: 76 PRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALW 135
Query: 481 EGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS 540
+ + ++ LSGGQ+QR+ IARA+ P ILL+DE TSALD S +++ +
Sbjct: 136 DEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK 195
Query: 541 LGRTTLVVAHKL-STVRNADLIAVVDNGCLVEIG 573
T ++V H + R +D + G LVE G
Sbjct: 196 KVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHG 229
|
Length = 252 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 4e-18
Identities = 61/214 (28%), Positives = 94/214 (43%), Gaps = 24/214 (11%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELD----VH 1064
+L+ + VK G +V +VG SG GKST++ ++ D G VR+ G + +LD
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 1065 WYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVV--EAARAANAHEFISSLKDGYET 1122
+H V Q + L A EN + E ++A +
Sbjct: 85 LRARHVGFVFQSFHLIP----------NLTALENVALPLELRGESSADSRAGAKALLEAV 134
Query: 1123 ECGER----GVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQE---ALDR 1175
G+R QLSGG++QR+A+ARA P +L DE T LD + + + AL+R
Sbjct: 135 GLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNR 194
Query: 1176 IMMGRTTIVVAHRLNTIKKLDSIALVADGRVVER 1209
G T ++V H + D + GR+VE
Sbjct: 195 -ERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227
|
Length = 228 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 4e-18
Identities = 69/219 (31%), Positives = 109/219 (49%), Gaps = 26/219 (11%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKST----VIGLIQRFYDVEQGSVRVDGMDVRELDVH 1064
+LR S+EV G ++G++G GK+T ++GL+ V+ GS+R+DG D+ +L H
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP----VKSGSIRLDGEDITKLPPH 70
Query: 1065 W-YRKHTALVSQEPVIYAGNIRDNIVFGKLDASEN-EVVEAARAANAH---EFISSLKDG 1119
R A V Q G R+ +F +L EN AA + + I L
Sbjct: 71 ERARAGIAYVPQ------G--RE--IFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV 120
Query: 1120 YETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRI--M 1177
+ G RG LSGGQ+Q++AIARA++ P +LLLDE T + + + + R+
Sbjct: 121 LKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE 180
Query: 1178 MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
G ++V L+ ++L D ++ GRVV G +L
Sbjct: 181 GGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 4e-18
Identities = 63/227 (27%), Positives = 104/227 (45%), Gaps = 27/227 (11%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDG-----MDVR---- 1059
VL + V G V L+G SG GKST++ ++ +++G ++V+G M R
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74
Query: 1060 ----ELDVHWYRKHTALVSQEPVIYA-GNIRDNIVFGKLDASENEVVEAARAANAHEFIS 1114
E + R +V Q ++ + DN+ + + A A E +
Sbjct: 75 VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLG--MARAEAEKRAMELLD 132
Query: 1115 SLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALD 1174
+ G + QLSGGQ+QR+AIARA+ P ++L DE TSALD ++V E L+
Sbjct: 133 MV--GLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALD---PELVGEVLN 187
Query: 1175 RIM-----MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
I T ++V H + ++ D + GR+VE+G ++
Sbjct: 188 VIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 4e-18
Identities = 62/215 (28%), Positives = 103/215 (47%), Gaps = 16/215 (7%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQ-----GSVRVDGMDVRELDV 1063
V++ +++ L+G SGCGKST++ R ++ + G VR+ G ++ DV
Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78
Query: 1064 H--WYRKHTALVSQEPVIYAG-NIRDNIVFG----KLDASENEVVEAARAANAHEFISSL 1116
R+ +V Q P + I DN+ G L S+ E+ E A ++L
Sbjct: 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKK---AAL 135
Query: 1117 KDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRI 1176
D + + LSGGQRQR+ IARA+ P ILL+DE T+ +D ++E L +
Sbjct: 136 WDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL 195
Query: 1177 MMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERG 1210
T ++V H ++ D +A + G+++E G
Sbjct: 196 KKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVG 230
|
Length = 253 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 4e-18
Identities = 67/217 (30%), Positives = 106/217 (48%), Gaps = 23/217 (10%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRF--YDVEQGSVRVDGMDVRELDVH-W 1065
+L+ ++ VK G ++G +G GKST+ I Y+V +G + DG D+ EL
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER 78
Query: 1066 YRKHTALVSQEPVIYAG-NIRDNIVFGKLDASENEVVEAARAANAHEFISSLKD-----G 1119
R L Q PV G D F L A+ N A EFI LK+ G
Sbjct: 79 ARAGIFLAFQYPVEIPGVTNSD---F--LRAAMNARRGAR--GILPEFIKELKEKAELLG 131
Query: 1120 YETECGERGVQ--LSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM 1177
+ E ER V SGG+++R I + ++ P + +LDE S LD+ + ++V E ++ +
Sbjct: 132 LDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR 191
Query: 1178 -MGRTTIVVAHR---LNTIKKLDSIALVADGRVVERG 1210
GR +++ H L+ IK D + ++ DGR+V+ G
Sbjct: 192 EEGRGVLIITHYQRLLDYIKP-DKVHVLYDGRIVKSG 227
|
Length = 251 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 5e-18
Identities = 66/230 (28%), Positives = 100/230 (43%), Gaps = 24/230 (10%)
Query: 375 DFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADD----GIVRIDGVDIRRLQLKWVR 430
D NL +K G+ +ALVG SGSGKS + G + +DG + L L
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPL--LPLSIRG 61
Query: 431 REMGLVSQE-----HALF--GTSIKDNIM-FGKLDATMDEVIAAATAANAHNFIRQLPEG 482
R + + Q + LF G + + GKL +I A A ++ +
Sbjct: 62 RHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKK 121
Query: 483 YETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALD--QAS 540
Y + LSGG QR+ IA A++ P L+ DE T+ LD ++ V L +
Sbjct: 122 YPFQ-------LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQL 174
Query: 541 LGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKM 589
G L++ H L V R AD +AV+D+G +VE GT ++ +
Sbjct: 175 FGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRK 224
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 5e-18
Identities = 60/244 (24%), Positives = 106/244 (43%), Gaps = 33/244 (13%)
Query: 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI 413
+ V +S R ++ ++ G L+G +GSGKST + L+ D G
Sbjct: 1 GLRLSRVSWSAGGRL---IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGT 57
Query: 414 VRIDGVDIRRLQLKWVRREMGLVSQEH-ALFGTSIKDNIMFGKL-------------DAT 459
V + GVD+ L + R + LV Q+ +++D + G++ A
Sbjct: 58 VDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAV 117
Query: 460 MDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDE 519
+D +A + H R + LSGG++QR+ +ARA+ + P +LLLDE
Sbjct: 118 VDRALARTELS--HLADRDMST------------LSGGERQRVHVARALAQEPKLLLLDE 163
Query: 520 ATSALDSESETLVQNAL-DQASLGRTTLVVAHKLS-TVRNADLIAVVDNGCLVEIGTHND 577
T+ LD ++ + + A+ G T + H L+ D + V+D G +V G +
Sbjct: 164 PTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPRE 223
Query: 578 LINR 581
++
Sbjct: 224 VLTP 227
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 5e-18
Identities = 50/176 (28%), Positives = 89/176 (50%), Gaps = 8/176 (4%)
Query: 352 RGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADD 411
+ E++ SY R V+ D +L+V +G+ V L+G +G+GK+T ++ D
Sbjct: 2 MSTLVAENLAKSYKKRK---VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS 58
Query: 412 GIVRIDGVDIRRLQL-KWVRREMGLVSQEHALF-GTSIKDNIMFGKLDATMDEVIAAATA 469
G + +D DI +L + K R +G + QE ++F +++DNIM L+ ++ A
Sbjct: 59 GKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIM-AVLEIREKDLKKAERK 117
Query: 470 ANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALD 525
+ + + LSGG+++R+ IARA+ NP +LLDE + +D
Sbjct: 118 EELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVD 171
|
Length = 243 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 5e-18
Identities = 75/232 (32%), Positives = 108/232 (46%), Gaps = 61/232 (26%)
Query: 1020 GTSVGLVGKSGCGKST----VIGLIQRFYDVEQGSVRVDGMDVREL-DVHWY--RKHTAL 1072
G ++G+VG+SGCGKST +IGL++ G V G D+ + D W R +
Sbjct: 47 GETLGVVGESGCGKSTFARAIIGLVK----ATDGEVAWLGKDLLGMKDDEWRAVRSDIQM 102
Query: 1073 VSQEPVIYAGNIRDNIVFGKLDA----------SENEVVEAARAANA------------- 1109
+ Q+P + + N R I G++ A S EV + +A
Sbjct: 103 IFQDP-LASLNPRMTI--GEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP 159
Query: 1110 HEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSE-QV 1168
HEF SGGQ QRI IARA+I P +++ DE SALDV + QV
Sbjct: 160 HEF-------------------SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQV 200
Query: 1169 VQ--EALDRIMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQLTH 1217
V + L R MG + I +AH L +K + D + ++ G VE GTY ++ H
Sbjct: 201 VNLLQQLQR-EMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYH 251
|
Length = 331 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 84.0 bits (209), Expect = 6e-18
Identities = 66/223 (29%), Positives = 100/223 (44%), Gaps = 25/223 (11%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVH---- 1064
L S V+PG GL+G +G GK+T+ LI F GSV DG D+ L H
Sbjct: 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIAR 74
Query: 1065 -----------WYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFI 1113
+ + T L E V+ A R A E RA E +
Sbjct: 75 LGIGRTFQIPRLFPELTVL---ENVMVAAQARTGSGLLLARARREEREARERAEELLERV 131
Query: 1114 SSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEAL 1173
L D + GE LS GQ++R+ IARA+ +P +LLLDE + L+ + + + E +
Sbjct: 132 G-LADLADRPAGE----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELI 186
Query: 1174 DRI-MMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQ 1214
+ G T ++V H ++ + L D + ++ GRV+ GT +
Sbjct: 187 RELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDE 229
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 90.0 bits (223), Expect = 6e-18
Identities = 116/563 (20%), Positives = 237/563 (42%), Gaps = 74/563 (13%)
Query: 41 CLLVFASRIMNSLGF---------------GQTQSQQNHHENFLDEVEKCSLYFV---YL 82
CL++F + + SL Q + + + S Y++ Y+
Sbjct: 873 CLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYV 932
Query: 83 GLA--VMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSIS 140
G A V+ + F G T ++ + L +VL+ + ++ A ++N +
Sbjct: 933 GTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKA---GRILNRFT 989
Query: 141 KDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLIIPGMIYGKYL 200
KD ++I ++L + F+ + + + + + + A P ++ I+ Y
Sbjct: 990 KDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRA----YF 1045
Query: 201 IYLSKKAYKEYGKANA-IVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLGIKQGTAK 259
+ S++ + +A + I ++S+K +++ A R ++ ++ + TA
Sbjct: 1046 LRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGR-----QSYFETLFHKALNLHTAN 1100
Query: 260 GLAVGSTGLSFAI---WAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELK 316
ST F + F+ ++ + + G GI L+ L + L+
Sbjct: 1101 WFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTNQDGEGEVGIILTLAMNILST----LQ 1156
Query: 317 YFTEASI-------AASRIFDRIDRVPEIDGEDTKGLVLDEVRGE--IEFEHVKFSYPSR 367
+ +SI + SR+F ID +P+ + + G ++ IE H + +PS
Sbjct: 1157 WAVNSSIDVDGLMRSVSRVFKFID-LPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSG 1215
Query: 368 PDSIV--------------LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI 413
V L+D + V+ G+ V L+G +GSGKST ++ + R + G
Sbjct: 1216 GQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-GE 1274
Query: 414 VRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDA----TMDEVIAAATA 469
++IDGV + L+ R+ G++ Q+ +F + + N LD + +E+ A
Sbjct: 1275 IQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKN-----LDPYEQWSDEEIWKVAEE 1329
Query: 470 ANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESE 529
+ I Q P+ + + + G +LS G KQ + +AR+I+ ILLLDE ++ LD +
Sbjct: 1330 VGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTL 1389
Query: 530 TLVQNALDQASLGRTTLVVAHKL 552
+++ L Q+ T ++ H++
Sbjct: 1390 QIIRKTLKQSFSNCTVILSEHRV 1412
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.1 bits (210), Expect = 6e-18
Identities = 67/222 (30%), Positives = 107/222 (48%), Gaps = 22/222 (9%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD-------ADDGIVRIDGVDI--RR 423
LK+ N+ V + AL+G SG GKST + R +D + I+ D V+I
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 424 LQLKWVRREMGLVSQEHALFGTSIKDNIMFG------KLDATMDEVIAAATAANAHNFIR 477
+ VR + +V Q+ F SI +N+ +G K + ++E + A A
Sbjct: 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAA----- 146
Query: 478 QLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALD 537
L + + ++G+ LSGGQ+QR+ IARA+ +P ILL DE TSALD + ++ +
Sbjct: 147 -LWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELIS 205
Query: 538 QASLGRTTLVVAHKL-STVRNADLIAVVDNGCLVEIGTHNDL 578
T L+V H + R +D A + G L+E G + +
Sbjct: 206 DLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTI 247
|
Length = 265 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 6e-18
Identities = 66/223 (29%), Positives = 101/223 (45%), Gaps = 40/223 (17%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRL---QLKW 428
VL + +L ++ G++V L+G SG GKST L+ G V G D+ +L Q +
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 429 VRREMGLVSQE-----------HALFG------TSIKDNIMFGKLDATMDEVIAAATAAN 471
RR++ LV Q+ + G TS+ ++ ++ +D V + A
Sbjct: 86 FRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDA- 144
Query: 472 AHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETL 531
+LP LSGGQ QRI IARA+ P +++LDEA S LD + +
Sbjct: 145 -----DKLP-----------RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAV 188
Query: 532 VQNALD--QASLGRTTLVVAHKLSTV-RNADLIAVVDNGCLVE 571
+ L Q + G L + H L V +AV+D G +VE
Sbjct: 189 ILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 6e-18
Identities = 60/219 (27%), Positives = 104/219 (47%), Gaps = 23/219 (10%)
Query: 375 DFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDG---VDI-RRLQLKWVR 430
D N + A AL G SGSGK++ I ++ D+G + ++G VD + + L +
Sbjct: 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEK 75
Query: 431 REMGLVSQEHALF-GTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGE 489
R +G V Q+ LF +++ N+ +G + + + + + P
Sbjct: 76 RRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGT------- 128
Query: 490 RGALLSGGQKQRIAIARAIIKNPVILLLDEATSALD----SESETLVQNALDQASLGRTT 545
LSGG+KQR+AI RA++ P +LL+DE ++LD E ++ D+ ++
Sbjct: 129 ----LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINI--PI 182
Query: 546 LVVAHKLSTV-RNADLIAVVDNGCLVEIGTHNDLINRID 583
L V+H L V R AD + V++NG + G ++ D
Sbjct: 183 LYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSPD 221
|
Length = 352 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 7e-18
Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 21/226 (9%)
Query: 369 DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAD-----DGIVRIDGVDIRR 423
D LK ++ + AL+G SG GKST + + R D DG V +DG DI +
Sbjct: 57 DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQ 116
Query: 424 --LQLKWVRREMGLVSQEHALFGTSIKDNIMFG-KLDATMDEVIAA---------ATAAN 471
+ L +R+ +G+V Q F SI++NI +G + ++ + A A
Sbjct: 117 DGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDEL 176
Query: 472 AHNFIRQ--LPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESE 529
+RQ L + ++ + LSGGQ+QR+ IAR + +P ++L+DE SALD +
Sbjct: 177 VERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIAT 236
Query: 530 TLVQNALDQASLGRTTLVVAHKL-STVRNADLIAV-VDNGCLVEIG 573
+ +++ +++ + T +VV H + R +D AV + G LVE
Sbjct: 237 SKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYD 282
|
Length = 305 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 7e-18
Identities = 68/224 (30%), Positives = 114/224 (50%), Gaps = 31/224 (13%)
Query: 369 DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDI--RRLQL 426
+ V+ + NL +K G V L+G SG GK+T + LV +G + IDG D+ R +Q
Sbjct: 18 SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ- 76
Query: 427 KWVRREMGLVSQEHALF-GTSIKDNI-----MFGKLDATMDEVIAAATAANAHNFIRQLP 480
+R++ +V Q +ALF S+ +N+ M G + + A + L
Sbjct: 77 ---QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALE------LVDL- 126
Query: 481 EGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALD--- 537
G+E + ++ +SGGQ+QR+A+ARA+I P +LL DE S LD+ L ++ +
Sbjct: 127 AGFEDRYVDQ---ISGGQQQRVALARALILKPKVLLFDEPLSNLDA---NLRRSMREKIR 180
Query: 538 --QASLGRTTLVVAHKLS-TVRNADLIAVVDNGCLVEIGTHNDL 578
Q T+L V H S +D + V++ G +++IG+ +L
Sbjct: 181 ELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.6 bits (209), Expect = 7e-18
Identities = 64/208 (30%), Positives = 102/208 (49%), Gaps = 32/208 (15%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIR--------- 422
VLK +L+ AG ++++G+SGSGKST + + +G + ++G I
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 423 ----RLQLKWVRREMGLVSQEHALFG-TSIKDNIMFGKLDATMDEVIAAATAANAHNFIR 477
+ QL+ +R + +V Q L+ ++ +N+M + + + A R
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ------VLGLSKQEA----R 129
Query: 478 QLPEGYETKVG--ERG-----ALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESET 530
+ Y KVG ER LSGGQ+QR++IARA+ P +LL DE TSALD E
Sbjct: 130 ERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVG 189
Query: 531 LVQNALDQ-ASLGRTTLVVAHKLSTVRN 557
V + Q A G+T +VV H++ R+
Sbjct: 190 EVLRIMQQLAEEGKTMVVVTHEMGFARH 217
|
Length = 257 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 89.6 bits (222), Expect = 8e-18
Identities = 73/269 (27%), Positives = 128/269 (47%), Gaps = 23/269 (8%)
Query: 956 AVASVFKILDRQSLIPGSSQAGDGTRGSK--------LQKI---SGKIEMRRVDFAYPSR 1004
+V+ VFK +D P S G + S QK G+++++ + Y
Sbjct: 1171 SVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA 1230
Query: 1005 PDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVH 1064
A VL+ S V+ G VGL+G++G GKST++ + R E G +++DG+ + +
Sbjct: 1231 GRA-VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-GEIQIDGVSWNSVTLQ 1288
Query: 1065 WYRKHTALVSQEPVIYAGNIRDNIVFGKLDA----SENEVVEAARAANAHEFISSLKDGY 1120
+RK ++ Q+ I++G R N LD S+ E+ + A I D
Sbjct: 1289 TWRKAFGVIPQKVFIFSGTFRKN-----LDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKL 1343
Query: 1121 ETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGR 1180
+ + G LS G +Q + +AR+I+ ILLLDE ++ LD + Q++++ L +
Sbjct: 1344 DFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNC 1403
Query: 1181 TTIVVAHRLNTIKKLDSIALVADGRVVER 1209
T I+ HR+ + + LV +G V++
Sbjct: 1404 TVILSEHRVEALLECQQF-LVIEGSSVKQ 1431
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 8e-18
Identities = 56/229 (24%), Positives = 107/229 (46%), Gaps = 15/229 (6%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
IE E++ Y D ++ + +V+ G+ L+G +G+GK+T I ++ G
Sbjct: 1 IEVENLVKKYG---DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRA 57
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHN 474
+ G D+ R + + VRR +G+V Q+ ++ D+ + G + + + A
Sbjct: 58 TVAGHDVVR-EPREVRRRIGIVFQDLSV------DDELTGWENLYIHARLYGVPGAERRE 110
Query: 475 FIRQLPEGYE--TKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLV 532
I +L + SGG ++R+ IAR+++ P +L LDE T LD ++ V
Sbjct: 111 RIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHV 170
Query: 533 QNALD--QASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDL 578
++ + G T L+ H + D +A++D+G ++ GT +L
Sbjct: 171 WEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 1e-17
Identities = 67/230 (29%), Positives = 109/230 (47%), Gaps = 34/230 (14%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVR--------- 1059
VL+ S++ G + ++G SG GKST + I GS+RV+G ++R
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80
Query: 1060 ----ELDVHWYRKHTALVSQEPVIYAG-NIRDNIVFGK---LDASENEVVEAARAANAHE 1111
+ + R +V Q +++ + +N++ L S+ E +E A A
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKV 140
Query: 1112 FISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQE 1171
I+ D Y LSGGQ+QR+AIARA+ P ++L DE TSALD ++V E
Sbjct: 141 GIAEKADAYP-------AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALD---PELVGE 190
Query: 1172 ALDRIMM-----GRTTIVVAHRLNTIKKLDS-IALVADGRVVERGTYAQL 1215
L ++M GRT +VV H + + + S + + G++ E G Q+
Sbjct: 191 VL-KVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQV 239
|
Length = 256 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 1e-17
Identities = 62/232 (26%), Positives = 111/232 (47%), Gaps = 25/232 (10%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
+E R + ++YP L+ + + + G V L+G +G GKST+ G V
Sbjct: 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 1052 RVDG--MDVRELDVHWYRKHTALVSQEP--VIYAGNIRDNIVFGKL------DASENEVV 1101
+ G + + + RK +V Q P ++A + +++ FG L + E V
Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVK 119
Query: 1102 EAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSAL 1161
EA +A +G+E + LSGGQ++R+AIA + P I++LDE TS L
Sbjct: 120 EALKAVGM--------EGFENKPPH---HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGL 168
Query: 1162 DVQ-SEQVVQEALDRIMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGT 1211
D + Q+++ D G T I+ H ++ + D + +++DG++++ GT
Sbjct: 169 DPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGT 220
|
Length = 275 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 1e-17
Identities = 66/225 (29%), Positives = 109/225 (48%), Gaps = 12/225 (5%)
Query: 1004 RPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELD- 1062
VL S+ +K G +V L+G+SGCGKST+ L+ QG+V G + +L+
Sbjct: 22 HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81
Query: 1063 --VHWYRKHTALVSQEPVIYAGNIRDNI--VFGKLDASENEVVEAARAANAHEFISSLKD 1118
+R+ +V Q+ I A N R + + + + +A R A A E + ++ D
Sbjct: 82 AQRKAFRRDIQMVFQDS-ISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAV-D 139
Query: 1119 GYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALD-VQSEQVVQ--EALDR 1175
++ +R QLSGGQ QR+ +ARA+ P +L+LDEA S LD V V++ + L +
Sbjct: 140 LDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKL-Q 198
Query: 1176 IMMGRTTIVVAHRLNTIKKLDSIALVAD-GRVVERGTYAQLTHMR 1219
G + + H L +++ +V D G++VE
Sbjct: 199 QQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLTFS 243
|
Length = 268 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 1e-17
Identities = 72/246 (29%), Positives = 108/246 (43%), Gaps = 47/246 (19%)
Query: 1003 SRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELD 1062
D VL + V+ G+ VGLVG +G GK+T++ I G+V V G DV L
Sbjct: 12 EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71
Query: 1063 VHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYET 1122
+ A V Q+ + + +VVE R + F T
Sbjct: 72 ARAASRRVASVPQDTSL------------SFEFDVRQVVEMGRTPHRSRF------DTWT 113
Query: 1123 ECGERGVQ------------------LSGGQRQRIAIARAIIRNPTILLLDEATSALD-- 1162
E V+ LSGG+RQR+ +ARA+ + +LLLDE T++LD
Sbjct: 114 ETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDIN 173
Query: 1163 --VQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQ-LT-- 1216
V++ ++V+ +D G+T + H L+ + D + L+ADGRV G A LT
Sbjct: 174 HQVRTLELVRRLVDD---GKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTAD 230
Query: 1217 HMRGAF 1222
+R AF
Sbjct: 231 TLRAAF 236
|
Length = 402 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 1e-17
Identities = 58/190 (30%), Positives = 90/190 (47%), Gaps = 23/190 (12%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRI----DGVDIRRL--- 424
VLK+ +L V AG+ VAL G SG+GKST + + Y D G + + VD+ +
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 425 QLKWVRR-EMGLVSQ-EHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEG 482
++ VRR +G VSQ + S + + L+ + A A A +
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLN----- 137
Query: 483 YETKVGER-----GALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALD 537
+ ER A SGG++QR+ IAR I + ILLLDE T++LD+ + +V +
Sbjct: 138 ----IPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIA 193
Query: 538 QASLGRTTLV 547
+A L+
Sbjct: 194 EAKARGAALI 203
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 2e-17
Identities = 58/219 (26%), Positives = 102/219 (46%), Gaps = 12/219 (5%)
Query: 359 HVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDG 418
+F + + + VK G+ L+G +G+GK+T + ++ + D G +DG
Sbjct: 8 TKRFRDVKKT-VQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDG 66
Query: 419 VDIRRLQLKWVRREMGLVSQEHALFG-TSIKDNIM-FGKLDATMDEVIAAATAANAHNFI 476
D+ + + RR +G VS L+ + ++N+ F L + + A A
Sbjct: 67 FDVVKEPAE-ARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRL- 124
Query: 477 RQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALD-SESETLVQNA 535
+ E + +VG S G +Q++AIARA++ +P +LLLDE T+ LD + L +
Sbjct: 125 -GMEELLDRRVGG----FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFI 179
Query: 536 LDQASLGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIG 573
+LG+ L H + V R D + V+ G +V G
Sbjct: 180 RQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 82.4 bits (203), Expect = 2e-17
Identities = 61/207 (29%), Positives = 100/207 (48%), Gaps = 8/207 (3%)
Query: 368 PDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLK 427
L + N+++ G+ +VG G GKS+ + + +G V + +
Sbjct: 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE 71
Query: 428 WV----RREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGY 483
R + +Q+ L ++++NI FG A A + I LP G
Sbjct: 72 ATRSRNRYSVAYAAQKPWLLNATVEENITFGS-PFNKQRYKAVTDACSLQPDIDLLPFGD 130
Query: 484 ETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSE-SETLVQNALDQ--AS 540
+T++GERG LSGGQ+QRI +ARA+ +N I+ LD+ SALD S+ L+Q + +
Sbjct: 131 QTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD 190
Query: 541 LGRTTLVVAHKLSTVRNADLIAVVDNG 567
RT ++V HKL + +AD I + +G
Sbjct: 191 DKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 88.4 bits (219), Expect = 2e-17
Identities = 64/213 (30%), Positives = 110/213 (51%), Gaps = 19/213 (8%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRR 431
VLK+ + K++ G+ +A+ G++GSGKS+ + ++ + +G ++ G Q W+
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWI-- 498
Query: 432 EMGLVSQEHALFGTSIKDNIMFGKLDATMDEV--IAAATAANAHNFIRQLPEGYETKVGE 489
+ GT IKDNI+FG + DE + A I PE +T +GE
Sbjct: 499 ----------MPGT-IKDNIIFG---LSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGE 544
Query: 490 RGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESET-LVQNALDQASLGRTTLVV 548
G LSGGQ+ RI++ARA+ K+ + LLD + LD +E + ++ L + +T ++V
Sbjct: 545 GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILV 604
Query: 549 AHKLSTVRNADLIAVVDNGCLVEIGTHNDLINR 581
KL ++ AD I ++ G GT ++L +
Sbjct: 605 TSKLEHLKKADKILLLHEGVCYFYGTFSELQAK 637
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 2e-17
Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 39/199 (19%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
I + + AY RP +L S+ + PG +GLVG++G GKST++ ++ + + G V
Sbjct: 4 ITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIYAG-NIRDNIVFGKLDASENEVVEAARAANAH 1110
+R +SQEP + + D ++ G + E A
Sbjct: 61 TRPK-GLRV----------GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109
Query: 1111 EFISSLKDGYETECGERGV------------------------QLSGGQRQRIAIARAII 1146
+ L E E LSGG R+R+A+ARA++
Sbjct: 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALL 169
Query: 1147 RNPTILLLDEATSALDVQS 1165
P +LLLDE T+ LD++S
Sbjct: 170 EEPDLLLLDEPTNHLDLES 188
|
Length = 530 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 2e-17
Identities = 63/213 (29%), Positives = 108/213 (50%), Gaps = 20/213 (9%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIG----LIQRFYDVE-QGSVRVDGMDV--RELD 1062
L+ ++ + ++G SGCGKST I +IQ +V+ G + +G ++ ++D
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 1063 VHWYRKHTALVSQEPVIYAGNIRDNIVFG------KLDASENEVVEAARAANAHEFISSL 1116
+ RK+ +V Q+ + +I DN+ +G K E+VE + A L
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVA------L 141
Query: 1117 KDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRI 1176
D + + + LSGGQ+QR+ IARA+ NP +LL+DE TSALD S + ++E + ++
Sbjct: 142 WDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL 201
Query: 1177 MMGRTTIVVAHRLNTIKKL-DSIALVADGRVVE 1208
T ++V H + ++ D A G +VE
Sbjct: 202 KEKYTIVIVTHNMQQAARVSDQTAFFYMGELVE 234
|
Length = 259 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 2e-17
Identities = 64/227 (28%), Positives = 105/227 (46%), Gaps = 20/227 (8%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIA-------LVQRFYDADDGIVRIDGVDIRRLQ 425
LK+ NL + + A++G SG GKST I +V + + ++
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 426 LKWVRREMGLVSQEHALFGTSIKDNIMFG------KLDATMDEVIAAATAANAHNFIRQL 479
L +R+ +G+V Q+ F SI DN+ +G K + E++ + A L
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVA------L 141
Query: 480 PEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQA 539
+ + ++ + LSGGQ+QR+ IARA+ NP +LL+DE TSALD S ++ + +
Sbjct: 142 WDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL 201
Query: 540 SLGRTTLVVAHKL-STVRNADLIAVVDNGCLVEIGTHNDLINRIDGH 585
T ++V H + R +D A G LVE N + + D
Sbjct: 202 KEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNPDDQ 248
|
Length = 259 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 2e-17
Identities = 50/214 (23%), Positives = 93/214 (43%), Gaps = 30/214 (14%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVH---- 1064
L S V+ G GL+G +G GK+T I +I + G V DG + +
Sbjct: 15 ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGY 74
Query: 1065 ------WYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKD 1118
Y K + ++Y ++ K +A E++ L+
Sbjct: 75 LPEERGLYPKMKV---IDQLVYLAQLKG---LKKEEA----------RRRIDEWLERLEL 118
Query: 1119 GYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM- 1177
+R +LS G +Q++ A+I +P +L+LDE S LD + +++++ + +
Sbjct: 119 SEYAN--KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR 176
Query: 1178 MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERG 1210
G+T I+ H++ +++L D + L+ GR V G
Sbjct: 177 AGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 2e-17
Identities = 63/241 (26%), Positives = 116/241 (48%), Gaps = 32/241 (13%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
I + V +Y ++ VL S+++ G ++G +G GKST++ ++ R + G +
Sbjct: 2 ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIYAG-NIRDNIVF-------GKLDASENEVVEA 1103
+DG+++ K +++ QE I + +RD + F G+L + ++
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINE 118
Query: 1104 ARAANAHEF--ISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSAL 1161
A E+ + L D Y E LSGGQRQR IA + ++ +LLDE + L
Sbjct: 119 AI-----EYLHLEDLSDRYLDE-------LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNL 166
Query: 1162 D----VQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLT 1216
D VQ ++++ D +G+T +VV H +N D I + +G+VV++G+ ++
Sbjct: 167 DMKHSVQIMKILRRLADE--LGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEII 224
Query: 1217 H 1217
Sbjct: 225 Q 225
|
Length = 252 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 2e-17
Identities = 66/237 (27%), Positives = 111/237 (46%), Gaps = 30/237 (12%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
I+ + Y + L D L G+++ L+G SG+GKS+ + ++ G +
Sbjct: 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 415 RI-----------DGVDIRRLQLKWVRREMGLVSQEHALF-GTSIKDNIMFGKLDATMDE 462
I IR L RR +G+V Q++ L+ +++ N+ ++A
Sbjct: 60 NIAGNHFDFSKTPSDKAIREL-----RRNVGMVFQQYNLWPHLTVQQNL----IEAPCR- 109
Query: 463 VIAAATAANAHNFIRQLPEGYE-TKVGERGAL-LSGGQKQRIAIARAIIKNPVILLLDEA 520
+ + A +L E +R L LSGGQ+QR+AIARA++ P +LL DE
Sbjct: 110 -VLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEP 168
Query: 521 TSALDSE-SETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTH 575
T+ALD E + +V + A G T ++V H++ R A + ++NG +VE G
Sbjct: 169 TAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225
|
Length = 242 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 2e-17
Identities = 56/218 (25%), Positives = 96/218 (44%), Gaps = 26/218 (11%)
Query: 1005 PDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVE---QGSVRVDGMDVREL 1061
P + +L + + G V L+G SGCGKST++ + + G + ++ + L
Sbjct: 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDML 72
Query: 1062 DVHWYRKHTALVSQEPVIYAG-NIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGY 1120
++ ++ Q+ +++ ++ N++F A + AR A+ + + G
Sbjct: 73 PAA--QRQIGILFQDALLFPHLSVGQNLLF----ALPATLKGNARRNAANAALE--RSGL 124
Query: 1121 ETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDV----QSEQVVQEALDRI 1176
+ + LSGGQR R+A+ RA++ P LLLDE S LDV Q Q V +
Sbjct: 125 DGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRA- 183
Query: 1177 MMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQ 1214
G T+ V H D + A RV+E + Q
Sbjct: 184 -AGIPTVQVTH--------DLQDVPAGSRVIEMAQWEQ 212
|
Length = 213 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 3e-17
Identities = 63/233 (27%), Positives = 105/233 (45%), Gaps = 25/233 (10%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFY---DVEQ 1048
+E + V F YP L S + G+ L+G +G GKST+ LI D
Sbjct: 6 VEFKHVSFTYPDSKKP-ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 1049 GSVRVDGMDVRELDVHWYRKHTALVSQEP--VIYAGNIRDNIVFGKLDASENEVVEAARA 1106
+ VDG+ + V R+ +V Q P + D++ FG EN RA
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFG----LEN------RA 114
Query: 1107 ANAHEFISSLKDGYETECGERGVQ------LSGGQRQRIAIARAIIRNPTILLLDEATSA 1160
E I ++D + G LSGGQ+QR+AIA + P I++LDE+TS
Sbjct: 115 VPRPEMIKIVRDVLA-DVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSM 173
Query: 1161 LDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKKLDSIALVADGRVVERGT 1211
LD ++ + + + ++ T I + H ++ D + ++ DG+++ +G+
Sbjct: 174 LDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGS 226
|
Length = 282 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.7 bits (204), Expect = 3e-17
Identities = 71/235 (30%), Positives = 111/235 (47%), Gaps = 26/235 (11%)
Query: 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD----- 408
+I+ E++ Y + LK+ ++++ AL+G SG GKST I + R D
Sbjct: 12 QIKVENLNLWYGEKQ---ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNC 68
Query: 409 ADDGIVRIDGVDIRRLQLKWV--RREMGLVSQEHALFGTSIKDNIMFG-------KLDAT 459
+G V I+G DI + V R+ +G+V Q+ F SI DN+ +G K D
Sbjct: 69 RIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKD-- 126
Query: 460 MDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDE 519
+D V+ A + A L + ++ LSGGQ+QR+ IAR + P I+L DE
Sbjct: 127 LDGVVENALRSAA------LWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDE 180
Query: 520 ATSALDSESETLVQNALDQASLGRTTLVVAHKL-STVRNADLIAVVDNGCLVEIG 573
TSALD S +++ + T ++V H + R +D G L+E G
Sbjct: 181 PTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFG 235
|
Length = 258 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 3e-17
Identities = 62/223 (27%), Positives = 100/223 (44%), Gaps = 22/223 (9%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK 1068
+ S+EV+PG VGL+G +G GK+T+ LI FY G+V G D+ L H +
Sbjct: 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIAR 78
Query: 1069 --------HTALVSQ----EPVIYAGNIRDNI--VFGKLDASENEVVEAARAANAHEFIS 1114
T L E V + R + + G+ A + E RA EF+
Sbjct: 79 LGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVG 138
Query: 1115 SLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALD 1174
+ LS GQ++R+ IARA+ P +LLLDE + L+ + + + E +
Sbjct: 139 LGELAD-----RPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIR 193
Query: 1175 RI--MMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQ 1214
+ G T +++ H + + L D I ++ G V+ GT +
Sbjct: 194 ELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEE 236
|
Length = 250 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 80.2 bits (199), Expect = 3e-17
Identities = 53/219 (24%), Positives = 90/219 (41%), Gaps = 61/219 (27%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
+E+R + + L S+ V+ G L+G++G GKST++ ++ Y + G +
Sbjct: 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
Query: 1052 RVDGMDVRELDVHWYRKH-TALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAH 1110
VDG +V R+ A+V Q V
Sbjct: 58 LVDGKEVSFASPRDARRAGIAMVYQLSV-------------------------------- 85
Query: 1111 EFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQ 1170
GER Q + IARA+ RN +L+LDE T+AL + +
Sbjct: 86 --------------GER---------QMVEIARALARNARLLILDEPTAALTPAEVERLF 122
Query: 1171 EALDRIM-MGRTTIVVAHRLNTIKKL-DSIALVADGRVV 1207
+ + R+ G I ++HRL+ + ++ D + ++ DGRVV
Sbjct: 123 KVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 3e-17
Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 9/178 (5%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
++ ++V + +L + + ++AG+ + G SG GKST + +V G +
Sbjct: 8 LQLQNVGYLAGDAK---ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHN 474
+G DI L+ + R+++ +Q LFG ++ DN++F + A +
Sbjct: 65 LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIF-PWQIRNQQPDPAIFLDDLER 123
Query: 475 FIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLV 532
F LP+ TK A LSGG+KQRI++ R + P +LLLDE TSALD ++ V
Sbjct: 124 F--ALPDTILTK---NIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNV 176
|
Length = 225 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 3e-17
Identities = 71/241 (29%), Positives = 112/241 (46%), Gaps = 22/241 (9%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
IE + +SY + L + N +A++G +G+GKST G V
Sbjct: 4 IETRDLCYSYSGSKE--ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQ--EHALFGTSIKDNIMFGKLDATMDEVIAAATAANA 472
I G I + ++ VR+ +GLV Q + +F +++ +I FG ++ +DE A
Sbjct: 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDE---ETVAHRV 118
Query: 473 HNFIRQLP-EGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESET- 530
+ + L E +V LSGG+K+R+AIA I P +L+LDE T+ LD +
Sbjct: 119 SSALHMLGLEELRDRVPHH---LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKE 175
Query: 531 --LVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLV------EIGTHNDLINR 581
N L + + G T + H+L V AD I V+D G +V EI DL+ R
Sbjct: 176 LIDFLNDLPE-TYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLAR 234
Query: 582 I 582
+
Sbjct: 235 V 235
|
Length = 277 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 3e-17
Identities = 67/211 (31%), Positives = 110/211 (52%), Gaps = 27/211 (12%)
Query: 375 DFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434
D +L + G+ AL+GASG GKST + ++ F G + +DGVD+ + +R +
Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLS--HVPPYQRPIN 94
Query: 435 LVSQEHALF-GTSIKDNIMFG-KLDATMDEVIAAATA-----ANAHNFIRQLPEGYETKV 487
++ Q +ALF +++ NI FG K D IA+ + F ++ P
Sbjct: 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQ----- 149
Query: 488 GERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQ----NALDQASLGR 543
LSGGQ+QR+A+AR++ K P +LLLDE ALD + +Q + L++ +G
Sbjct: 150 ------LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILER--VGV 201
Query: 544 TTLVVAH-KLSTVRNADLIAVVDNGCLVEIG 573
T ++V H + + A IA+++ G V+IG
Sbjct: 202 TCVMVTHDQEEAMTMAGRIAIMNRGKFVQIG 232
|
Length = 377 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.5 bits (206), Expect = 3e-17
Identities = 71/258 (27%), Positives = 129/258 (50%), Gaps = 22/258 (8%)
Query: 353 GEIEFEHVKFSYPSRP--DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAD 410
+I ++V ++Y + + L + +L K K ++G +GSGKST I L ++
Sbjct: 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE 64
Query: 411 DGIVRIDG----VDIRRL-QLKWVRREMGLVSQ--EHALFGTSIKDNIMFGKLDATMDEV 463
G + +++++ ++K +R+E+GLV Q E+ LF +I+ +I FG ++ ++
Sbjct: 65 TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQ 124
Query: 464 IAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSA 523
A + QLPE Y V LSGGQK+R+A+A I + L+LDE T
Sbjct: 125 EAYKKVPELLKLV-QLPEDY---VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGG 180
Query: 524 LDSESETLVQNALDQ--ASLGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIG------T 574
LD + E N ++ + ++V H + V R AD + V+ G ++ IG +
Sbjct: 181 LDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS 240
Query: 575 HNDLINRIDGHYAKMAKL 592
+ +L+ +I+ K+ +L
Sbjct: 241 NQELLTKIEIDPPKLYQL 258
|
Length = 289 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 3e-17
Identities = 66/230 (28%), Positives = 106/230 (46%), Gaps = 38/230 (16%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIA-------------LVQRFYDADDGIVRIDG 418
L + + + K ++G SGSGKST + V Y D
Sbjct: 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100
Query: 419 VDIRRLQLK---WVRREMGLVSQ--EHALFGTSIKDNIMFGKLDATMDEVIAAATAANAH 473
+ ++K +RR + +V Q E+ LF +I+ +IMFG + + + A
Sbjct: 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEA-------- 152
Query: 474 NFIRQLPEGYETKVG------ERGAL-LSGGQKQRIAIARAIIKNPVILLLDEATSALDS 526
++L + Y K+G ER LSGGQK+R+AIA + P IL+ DE T+ LD
Sbjct: 153 ---KKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDP 209
Query: 527 ESET-LVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGT 574
+ E ++Q LD + +T V+ H + V AD + V+D G +++ GT
Sbjct: 210 KGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGT 259
|
Length = 320 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 4e-17
Identities = 53/197 (26%), Positives = 102/197 (51%), Gaps = 4/197 (2%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRR 431
VL++ + + G+ V L+G +GSGKST ++ R + + G ++IDGV + L+ R+
Sbjct: 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GDIQIDGVSWNSVPLQKWRK 77
Query: 432 EMGLVSQEHALFGTSIKDNI-MFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGER 490
G++ Q+ +F + + N+ +GK +E+ A + I Q P + + +
Sbjct: 78 AFGVIPQKVFIFSGTFRKNLDPYGKWSD--EEIWKVAEEVGLKSVIEQFPGQLDFVLVDG 135
Query: 491 GALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAH 550
G +LS G KQ + +AR+++ ILLLDE ++ LD + +++ L QA T ++ H
Sbjct: 136 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEH 195
Query: 551 KLSTVRNADLIAVVDNG 567
++ + V++
Sbjct: 196 RIEAMLECQRFLVIEEN 212
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.4 bits (203), Expect = 4e-17
Identities = 68/245 (27%), Positives = 116/245 (47%), Gaps = 28/245 (11%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAD---- 410
I+ + + F Y + S ++ ++ + K A++G SG GKST I + R + +
Sbjct: 8 IKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVK 64
Query: 411 -DGIVRIDGVDI--RRLQLKWVRREMGLVSQEHALFGTSIKDNIMFG------KLDATMD 461
+G+V G +I R+ + +RR++G+V Q F SI +N+ +G A +D
Sbjct: 65 VEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLD 124
Query: 462 EVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEAT 521
E++ +A A L + + K+ + LSGGQ+QR+ IARA+ P +LL+DE
Sbjct: 125 EIVESALKGAA------LWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPC 178
Query: 522 SALDSESETLVQNALDQASLGRTTLVVAHKL-STVRNADLIAVVDN-----GCLVEIGTH 575
SALD + V+ + T +V H + R +D A G +VE G
Sbjct: 179 SALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVT 238
Query: 576 NDLIN 580
+ +
Sbjct: 239 TQIFS 243
|
Length = 259 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 4e-17
Identities = 61/204 (29%), Positives = 84/204 (41%), Gaps = 51/204 (25%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRV-------DGMDVREL 1061
VL+ S+ V G V L G SG GKST++ + Y + G + V D
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 1062 DVHWYRKHT-ALVSQ---------------EPVIYAGNIRDNIVFGKLDASENEVVEAAR 1105
+V R+ T VSQ EP++ G R EAAR
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPR----------------EAAR 126
Query: 1106 AANAHEFISSLKDGYETECGERGVQL-----SGGQRQRIAIARAIIRNPTILLLDEATSA 1160
A A E ++ L ER L SGG++QR+ IAR I + ILLLDE T++
Sbjct: 127 AR-ARELLARL------NIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTAS 179
Query: 1161 LDVQSEQVVQEALDRIMMGRTTIV 1184
LD + QVV E + ++
Sbjct: 180 LDAANRQVVVELIAEAKARGAALI 203
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 4e-17
Identities = 66/234 (28%), Positives = 115/234 (49%), Gaps = 22/234 (9%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
I+ V SY D +V+ D + + G+ L+G +G+GKST ++ D G +
Sbjct: 5 IDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHAL-FGTSIKDNIM-----FGKLDATMDEVIAAAT 468
+ G + + + R +G+V Q L ++++N++ FG ++ VI +
Sbjct: 62 TVLGEPVPS-RARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLL 120
Query: 469 AANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSES 528
F R E+K R ALLSGG K+R+ +ARA+I +P +L+LDE T+ LD +
Sbjct: 121 -----EFAR-----LESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 170
Query: 529 ETLVQNALDQ-ASLGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIGTHNDLIN 580
L+ L + G+T L+ H + R D + V+++G + G + LI+
Sbjct: 171 RHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 4e-17
Identities = 64/231 (27%), Positives = 109/231 (47%), Gaps = 22/231 (9%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
++ E + ++Y + LK N+ +K G+ A++G +G+GKST + G +
Sbjct: 6 LKVEELNYNYSDGTHA--LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 415 RIDG--VDIRRLQLKWVRREMGLVSQ--EHALFGTSIKDNIMFGKLDATM--DEVIAAAT 468
DG +D R L +R +G+V Q ++ LF S+ ++ FG ++ + DEV
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVD 123
Query: 469 AANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALD--- 525
A I L + + LS GQK+R+AIA ++ P +L+LDE T+ LD
Sbjct: 124 NALKRTGIEHLKD-------KPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMG 176
Query: 526 -SESETLVQNALDQASLGRTTLVVAHKLSTVR-NADLIAVVDNGCLVEIGT 574
SE L+ + LG T ++ H + V D + V+ G ++ G
Sbjct: 177 VSEIMKLLVEMQKE--LGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 225
|
Length = 283 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.2 bits (205), Expect = 5e-17
Identities = 68/231 (29%), Positives = 110/231 (47%), Gaps = 19/231 (8%)
Query: 356 EFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD-----AD 410
E + F Y +R VL D NL +K K A +G SG GKST + + + D +
Sbjct: 82 EIRNFNFWYMNRTKH-VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140
Query: 411 DGIVRIDGVDIRRLQLKWV--RREMGLVSQEHALFGTSIKDNIMFGKL-----DATMDEV 463
+G + G + R ++ + R +G+V Q+ F SI DN+ +G D + E
Sbjct: 141 EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEK 200
Query: 464 IAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSA 523
I + +A L + + + + G LSGGQ+QR+ IARAI P +LL+DE TSA
Sbjct: 201 IVEKSLKSA-----ALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSA 255
Query: 524 LDSESETLVQNALDQASLGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIG 573
LD + ++ + + + ++V H ++ R +D G + E G
Sbjct: 256 LDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306
|
Length = 329 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 6e-17
Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 32/229 (13%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK 1068
L+ S+ VK G V L+G SGCGK+T++ +I G++ G D+ L ++
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KR 76
Query: 1069 HTALVSQEPVIYAG-NIRDNIVFG----KLDASENEVVEAARAANAHEFI--SSLKDGYE 1121
+V Q ++ + DNI +G + +E A R A + + + Y
Sbjct: 77 DYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAE----VAERVAELLDLVGLPGSERKYP 132
Query: 1122 TECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM---- 1177
QLSGGQ+QR+A+ARA+ +P +LLLDE SALD + V+E L +
Sbjct: 133 G-------QLSGGQQQRVALARALATSPGLLLLDEPLSALDAR----VREHLRTEIRQLQ 181
Query: 1178 --MGRTTIVVAH-RLNTIKKLDSIALVADGRVVERGTYAQL-THMRGAF 1222
+G TTI+V H + + D I ++ G + + GT ++ H F
Sbjct: 182 RRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF 230
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 6e-17
Identities = 61/207 (29%), Positives = 99/207 (47%), Gaps = 12/207 (5%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVREL---DVHW 1065
VL+ S+ + G V +VG SG GKST++ L+ + G V +G + +L +
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79
Query: 1066 YR-KHTALVSQ-EPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETE 1123
R K + Q ++ +N+ L + V EA A K G E
Sbjct: 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLL-IGKKSVKEAKERAYE----MLEKVGLEHR 134
Query: 1124 CGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTT- 1182
R +LSGG+RQR+AIARA++ P+++L DE T LD + +++ + + + T
Sbjct: 135 INHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTS 194
Query: 1183 -IVVAHRLNTIKKLDSIALVADGRVVE 1208
+VV H L KKLD + + DG++
Sbjct: 195 FLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.3 bits (203), Expect = 6e-17
Identities = 66/225 (29%), Positives = 108/225 (48%), Gaps = 13/225 (5%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
I E+V +SYP + L++ NL +K G+ + ++G +GSGKST + G V
Sbjct: 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 415 RIDGVDIRRL-QLKWVRREMGLVSQ--EHALFGTSIKDNIMFGKLDATMDEVIAAATAAN 471
+ G+D +L+ +R+ +G+V Q E G ++++++ FG E +
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGP------ENLCLPPIEI 113
Query: 472 AHNFIRQLPE-GYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSES-E 529
R L E G E LSGGQ Q +A+A + P L+ DE TS LD +S
Sbjct: 114 RKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGI 173
Query: 530 TLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGT 574
+++ G+T + + H L + +AD I V+D G +V G
Sbjct: 174 AVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGE 218
|
Length = 274 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 7e-17
Identities = 70/224 (31%), Positives = 110/224 (49%), Gaps = 27/224 (12%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDV---RELD--- 1062
VL +EVKPG V ++G SG GK+T++ I E G++RV + + R L
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77
Query: 1063 --VHWYRKHTALVSQEPVIYAG-NIRDNIVFGKL---DASENEVVEAARAANAHEFISSL 1116
+ R+H V Q ++ + +NI+ G + + E AR A ++
Sbjct: 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK 137
Query: 1117 KDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRI 1176
+ Y +LSGGQ+QR+AIARA+ P ++L DE TSALD ++V E L+ I
Sbjct: 138 ETSYPR-------RLSGGQQQRVAIARALAMRPEVILFDEPTSALD---PELVGEVLNTI 187
Query: 1177 MM----GRTTIVVAHRLNTIKKLDSIALVAD-GRVVERGTYAQL 1215
RT ++V H ++ + + A+ D GR+VE+G L
Sbjct: 188 RQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKAL 231
|
Length = 250 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.1 bits (202), Expect = 7e-17
Identities = 65/240 (27%), Positives = 111/240 (46%), Gaps = 33/240 (13%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
+E+ + F Y D L S + G V ++G++G GKST LI ++ +G V
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEP--VIYAGNIRDNIVFGKLDASENE---------- 1099
++DG + +V R+ +V Q P + D++ FG EN+
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGM----ENQGIPREEMIKR 120
Query: 1100 VVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATS 1159
V EA A N +F + +LSGGQ+QR+A+A I P I++LDE+TS
Sbjct: 121 VDEALLAVNMLDFKT-----------REPARLSGGQKQRVAVAGIIALRPEIIILDESTS 169
Query: 1160 ALDV--QSE--QVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQL 1215
LD + E +V+ E ++ + T + + H L+ D I ++ G +++ ++L
Sbjct: 170 MLDPTGRQEIMRVIHEIKEKYQL--TVLSITHDLDEAASSDRILVMKAGEIIKEAAPSEL 227
|
Length = 277 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 7e-17
Identities = 67/207 (32%), Positives = 96/207 (46%), Gaps = 28/207 (13%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRR 431
VL +L + AG+ VA+VG SG GKST + L+ G + L R
Sbjct: 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAG-----TAPLAEARE 81
Query: 432 EMGLVSQEHALFG-TSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGER 490
+ L+ Q+ L + DN+ G D + A A G + E
Sbjct: 82 DTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAV-----------GLADRANEW 130
Query: 491 GALLSGGQKQRIAIARAIIKNPVILLLDEATSALDS----ESETLVQNALDQASLGRTTL 546
A LSGGQKQR+A+ARA+I P +LLLDE ALD+ E + L+++ Q G T L
Sbjct: 131 PAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQH--GFTVL 188
Query: 547 VVAHKLSTVRNADLIAVVDNGCLVEIG 573
+V H +S + +A+ D L+E G
Sbjct: 189 LVTHDVS-----EAVAMADRVLLIEEG 210
|
Length = 257 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 7e-17
Identities = 63/212 (29%), Positives = 105/212 (49%), Gaps = 24/212 (11%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
I FEHV +Y ++ F+++ G+ L G SG+GKST + L+ G +
Sbjct: 2 IRFEHVSKAYLGGRQALQGVTFHMR--PGEMAFLTGHSGAGKSTLLKLICGIERPSAGKI 59
Query: 415 RIDGVDIRRL---QLKWVRREMGLVSQEHALF-GTSIKDNIMFGKLDATMDEVIAAATAA 470
G DI RL ++ ++RR++G++ Q+H L ++ DN+ + +IA A+
Sbjct: 60 WFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNV-------AIPLIIAGASGD 112
Query: 471 NAHNFIRQLPEGYETKVG------ERGALLSGGQKQRIAIARAIIKNPVILLLDEATSAL 524
+ IR+ KVG LSGG++QR+ IARA++ P +LL DE T L
Sbjct: 113 D----IRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNL 168
Query: 525 DSE-SETLVQNALDQASLGRTTLVVAHKLSTV 555
D SE +++ + +G T L+ H + +
Sbjct: 169 DDALSEGILRLFEEFNRVGVTVLMATHDIGLI 200
|
Length = 222 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 8e-17
Identities = 65/234 (27%), Positives = 113/234 (48%), Gaps = 22/234 (9%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
I+ V SY D V+ + V +G+ L+G +G+GKST ++ D G +
Sbjct: 42 IDLAGVSKSYG---DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHAL-FGTSIKDNIM-----FGKLDATMDEVIAAAT 468
+ GV + + + R +G+V Q L ++++N++ FG ++ VI +
Sbjct: 99 TVLGVPVPA-RARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLL 157
Query: 469 AANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSES 528
F R E+K R + LSGG K+R+ +ARA+I +P +L+LDE T+ LD +
Sbjct: 158 -----EFAR-----LESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 207
Query: 529 ETLVQNALDQ-ASLGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIGTHNDLIN 580
L+ L + G+T L+ H + R D + V++ G + G + LI+
Sbjct: 208 RHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261
|
Length = 340 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.2 bits (200), Expect = 9e-17
Identities = 65/216 (30%), Positives = 106/216 (49%), Gaps = 21/216 (9%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAD-----DGIVRIDGVDI--RRLQ 425
+KD ++ A++G SG GKST + + R +D G + +D DI R +
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 426 LKWVRREMGLVSQEHALF-GTSIKDNIMFG-KLD-----ATMDEVIAAATAANAHNFIRQ 478
+RR +G+V Q+ F SI DN++ G KL+ + DE++ ++ A
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVA------ 133
Query: 479 LPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQ 538
L + + ++ LSGGQ+QR+ IAR I P ++L+DE SALD S ++ +++
Sbjct: 134 LWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEE 193
Query: 539 ASLGRTTLVVAHKL-STVRNADLIAVVDNGCLVEIG 573
T ++V H + R +D A G LVE G
Sbjct: 194 LKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECG 229
|
Length = 252 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 1e-16
Identities = 68/241 (28%), Positives = 113/241 (46%), Gaps = 17/241 (7%)
Query: 352 RGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD--- 408
+IE +K S+ VL NL++ AL+G SGSGKST + + R +
Sbjct: 1 MNKIEIRDLKVSFG---QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYP 57
Query: 409 --ADDGIVRIDGVDIRRLQLKWVRREMGLVSQ-EHALFGTSIKDNIMFG----KLDATMD 461
G V +DG DI ++ + +RR + +V Q + + SI +N+ G +L +
Sbjct: 58 EARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKK 117
Query: 462 EVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEAT 521
E+ A QL + + ++ LSGGQ+QR+ IARA+ P +LL DE T
Sbjct: 118 ELQERVRWALEK---AQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPT 174
Query: 522 SALDSESETLVQNALDQASLGRTTLVVAH-KLSTVRNADLIAVVDNGCLVEIGTHNDLIN 580
+ LD E+ +++ + T ++V H R +D +A + G +VE G ++
Sbjct: 175 ANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFT 234
Query: 581 R 581
Sbjct: 235 N 235
|
Length = 250 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 1e-16
Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 24/210 (11%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK 1068
VL S+ VK G G +G +G GK+T + +I + G + DG ++
Sbjct: 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN------- 67
Query: 1069 HTALVSQEPVIYAGNIRDN-IVFGKLDASENEVVEAARAANAHEFISSLKD--GYETECG 1125
E + G + + + L A EN + A + I + D G +
Sbjct: 68 ------IEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK 121
Query: 1126 ERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM----MGRT 1181
++ S G +QR+ IA A++ NP +L+LDE T+ LD ++E + I+ G T
Sbjct: 122 KKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDG---IKELRELILSLRDQGIT 178
Query: 1182 TIVVAHRLNTIKKL-DSIALVADGRVVERG 1210
++ +H L+ I+K+ D I ++ G+++E G
Sbjct: 179 VLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 1e-16
Identities = 67/224 (29%), Positives = 106/224 (47%), Gaps = 38/224 (16%)
Query: 380 VKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIR---RLQLKWVRREMGLV 436
++ GK++A+VG SG GKST L+ G + G D+ K +R+++ +V
Sbjct: 38 LERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIV 97
Query: 437 SQEHALFGTSIKDNIMFGKLD------ATMDE--VI-----AAATAANAHNFIRQL---P 480
Q +G L+ ++E +I AA A + ++ P
Sbjct: 98 FQNP------------YGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP 145
Query: 481 EGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNAL-D-Q 538
E Y + SGGQ+QRIAIARA++ +P +++ DE SALD + V N + D Q
Sbjct: 146 EHY----DRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQ 201
Query: 539 ASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581
LG + + ++H LS V + AD + V+ G VE GT + N
Sbjct: 202 QELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNN 245
|
Length = 327 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 1e-16
Identities = 64/202 (31%), Positives = 101/202 (50%), Gaps = 20/202 (9%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVREL--DVHWYR 1067
L+ ++ ++ G + L+G SGCGKST++ LI G V ++G + E D
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 1068 KHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGER 1127
++ +L+ V R+NI +D ++ ++ R A E I+ + G +R
Sbjct: 61 QNYSLLPWLTV------RENIALA-VDRVLPDLSKSERRAIVEEHIALV--GLTEAADKR 111
Query: 1128 GVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVV 1185
QLSGG +QR+AIARA+ P +LLLDE ALD + +QE L +I T ++V
Sbjct: 112 PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMV 171
Query: 1186 AHRLNTIKKLDSIALVADGRVV 1207
H +D L++D RVV
Sbjct: 172 TH------DVDEALLLSD-RVV 186
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 1e-16
Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 24/211 (11%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRRE 432
LK NL ++ G+ ++L+G SG GKST + L+ G V ++G I +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG-----PD 55
Query: 433 MGLVSQEHALFG-TSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQ------LPEGYET 485
+V Q ++L ++++NI +D V+ + + + + L E +
Sbjct: 56 RMVVFQNYSLLPWLTVRENIALA-----VDRVLPDLSKSERRAIVEEHIALVGLTEAADK 110
Query: 486 KVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQ--ASLGR 543
+ G+ LSGG KQR+AIARA+ P +LLLDE ALD+ + +Q L Q
Sbjct: 111 RPGQ----LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRV 166
Query: 544 TTLVVAHKL-STVRNADLIAVVDNGCLVEIG 573
T L+V H + + +D + ++ NG IG
Sbjct: 167 TVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.6 bits (200), Expect = 1e-16
Identities = 66/244 (27%), Positives = 109/244 (44%), Gaps = 46/244 (18%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+E ++ R +L D +L ++ G+ VA++G +G+GKST + + D G V
Sbjct: 3 LEARNLSVRLGGRT---LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV 59
Query: 415 RIDGVDIRRLQLKWVRREM----GLVSQEHAL-FGTSIKDNIMFG---------KLDATM 460
R++G + W E+ ++ Q +L F ++++ + G + DA +
Sbjct: 60 RLNGRPLAD----WSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALV 115
Query: 461 DEVIAAATAAN-AHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAII------KNPV 513
+A A+ A Q LSGG++QR+ +AR + P
Sbjct: 116 AAALAQVDLAHLAGRDYPQ---------------LSGGEQQRVQLARVLAQLWEPDGPPR 160
Query: 514 ILLLDEATSALD-SESETLVQNALDQA-SLGRTTLVVAHKLS-TVRNADLIAVVDNGCLV 570
LLLDE TSALD + +++ A A G +VV H L+ R AD I ++ G LV
Sbjct: 161 WLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLV 220
Query: 571 EIGT 574
GT
Sbjct: 221 ADGT 224
|
Length = 258 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.5 bits (198), Expect = 2e-16
Identities = 60/230 (26%), Positives = 112/230 (48%), Gaps = 14/230 (6%)
Query: 992 IEMRRVDFAY-PSRPDA-LVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQG 1049
I+ +V++ Y P+ P A L +EVK G+ L+G +G GKST++ + +G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 1050 SVRVDGMDV----RELDVHWYRKHTALVSQEP--VIYAGNIRDNIVFGKLDASENEVVEA 1103
V V + V ++ ++ RK +V Q P ++ + ++ FG + +
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAE 121
Query: 1104 ARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDV 1163
AA E + + +E + +LSGGQ +R+AIA + P +L+LDE T+ LD
Sbjct: 122 KIAAEKLEMVGLADEFWE----KSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDP 177
Query: 1164 QSEQVVQEALDRI-MMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGT 1211
++ + + + I G+T ++V H ++ + D + L+ G ++ GT
Sbjct: 178 KARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGT 227
|
Length = 288 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 2e-16
Identities = 67/231 (29%), Positives = 109/231 (47%), Gaps = 24/231 (10%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
I + V F Y S + L+ S + G +VG +G GKST+ L+ V+ G +
Sbjct: 8 IVFKNVSFQYQS-DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 1052 -----RVDGMDVRELDVHWYRKHTALVSQEPV-IYAGNI-RDNIVFGKLDASENEVVEAA 1104
+ + +L RKH +V Q P + G+I + ++ FG EN V
Sbjct: 67 FYNNQAITDDNFEKL-----RKHIGIVFQNPDNQFVGSIVKYDVAFGL----ENHAVPYD 117
Query: 1105 RAANAHEFIS-SLKDGYETECGERGVQ-LSGGQRQRIAIARAIIRNPTILLLDEATSALD 1162
H +S +LK E + LSGGQ+QR+AIA + NP++++LDEATS LD
Sbjct: 118 ---EMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLD 174
Query: 1163 VQSEQVVQEALDRIMMGR--TTIVVAHRLNTIKKLDSIALVADGRVVERGT 1211
+ Q + + + ++ T I + H L+ + D + ++ G V + GT
Sbjct: 175 PDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGT 225
|
Length = 269 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 2e-16
Identities = 57/231 (24%), Positives = 100/231 (43%), Gaps = 17/231 (7%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
IE++ V + +L S +V PG +VG +G GK+T++ L+ + G V
Sbjct: 32 IELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88
Query: 1052 RVDGMDVRELDVHW-YRKHTALVS---QEPVIYAGNIRDNIVFGKLDASEN--EVVEAAR 1105
+ G + + + RK LVS E +RD ++ G + E + A
Sbjct: 89 TLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAED 148
Query: 1106 AANAHEFISSLKDGYETECGERGV-QLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQ 1164
A A L+ +R LS G+++R+ IARA++++P +L+LDE LD+
Sbjct: 149 LAAAQWL---LELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLI 205
Query: 1165 SEQVVQEALDRIMM---GRTTIVVAHRLNTIKK-LDSIALVADGRVVERGT 1211
+ + + L+ + + V H I L+ +G VV +G
Sbjct: 206 AREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256
|
Length = 257 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 2e-16
Identities = 64/219 (29%), Positives = 101/219 (46%), Gaps = 20/219 (9%)
Query: 1006 DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW 1065
D +R S V+ G GL+G +G GK+T I ++ G V G DV +
Sbjct: 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPRE 70
Query: 1066 YRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAA----RAANAHEFISSLKDGYE 1121
R+ +V Q+ V +L EN + A A E I L D
Sbjct: 71 VRRRIGIVFQDL----------SVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVG 120
Query: 1122 -TECGERGVQ-LSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-- 1177
E +R V+ SGG R+R+ IAR+++ P +L LDE T LD Q+ V E ++++
Sbjct: 121 LLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE 180
Query: 1178 MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
G T ++ H + ++L D +A++ GR++ GT +L
Sbjct: 181 FGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 2e-16
Identities = 56/200 (28%), Positives = 96/200 (48%), Gaps = 13/200 (6%)
Query: 364 YPSRPDS-IVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIR 422
+ P L +L++ G V ++G++G+GKST + + G + IDGVD+
Sbjct: 12 FKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVT 71
Query: 423 RLQLKWVRREM-GLVSQEHALFGT----SIKDNIMFGKLDATMDEVIAAATAANAHNF-- 475
+ R + V Q+ L GT +I++N+ + + +A +F
Sbjct: 72 KKS-VAKRANLLARVFQD-PLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRE 129
Query: 476 -IRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQN 534
+ +L G E ++ +R LLSGGQ+Q +++ A + P ILLLDE T+ALD ++ V
Sbjct: 130 RLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVME 189
Query: 535 ALDQ--ASLGRTTLVVAHKL 552
+ TTL+V H +
Sbjct: 190 LTAKIVEEHKLTTLMVTHNM 209
|
Length = 263 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 2e-16
Identities = 59/213 (27%), Positives = 100/213 (46%), Gaps = 20/213 (9%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV-----EQGSVRVDGMDV--RELD 1062
L+ ++++ ++G SGCGKST I + R ++ G + ++ +
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99
Query: 1063 VHWYRKHTALVSQEPVIYAGNIRDNIVFG-KLDASEN-----EVVEAARAANAHEFISSL 1116
V R + +V Q+P + +I DN+ +G K+ ++ E+VE + A L
Sbjct: 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAA--IWDEL 157
Query: 1117 KDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRI 1176
KD LSGGQ+QR+ IAR + P ++L+DE TSALD S V+E + +
Sbjct: 158 KDRLHDN----AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQEL 213
Query: 1177 MMGRTTIVVAHRLNTIKKL-DSIALVADGRVVE 1208
+ I+V H + ++ D A +G V E
Sbjct: 214 KKDYSIIIVTHNMQQAARISDKTAFFLNGYVNE 246
|
Length = 271 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 2e-16
Identities = 69/216 (31%), Positives = 106/216 (49%), Gaps = 25/216 (11%)
Query: 369 DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKW 428
D ++ KD NL + G+ V VG SG GKST + ++ D G + I + R +
Sbjct: 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIG--EKRMNDVPP 72
Query: 429 VRREMGLVSQEHALF-GTSIKDNIMFG-KLDATMDEVI------AAATAANAHNFIRQLP 480
R +G+V Q +AL+ S+ +N+ FG KL E I A AH R+ P
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRK-P 131
Query: 481 EGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDS--ESETLVQNALDQ 538
+ LSGGQ+QR+AI R ++ P + LLDE S LD+ + ++ +
Sbjct: 132 KA-----------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 180
Query: 539 ASLGRTTLVVAH-KLSTVRNADLIAVVDNGCLVEIG 573
LGRT + V H ++ + AD I V+D G + ++G
Sbjct: 181 KRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
|
Length = 369 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 2e-16
Identities = 64/233 (27%), Positives = 118/233 (50%), Gaps = 18/233 (7%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
I+F +V+ Y D +V+ + V+ G+ L+G +G+GK+T + ++ D G +
Sbjct: 8 IDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHAL---FGTSIKDNIM-FGKLDATMDEVIAAATAA 470
+ G + + + R+ +G+V Q L F ++++N++ FG+ + A A
Sbjct: 65 SLCGEPVPS-RARHARQRVGVVPQFDNLDPDF--TVRENLLVFGRYFG-LSAAAARALVP 120
Query: 471 NAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESET 530
F + L + KVGE LSGG K+R+ +ARA++ +P +L+LDE T+ LD ++
Sbjct: 121 PLLEFAK-LENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARH 175
Query: 531 LVQNALDQ-ASLGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIGTHNDLINR 581
L+ L + G+T L+ H + R D + V++ G + G + LI
Sbjct: 176 LMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228
|
Length = 306 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 3e-16
Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 35/202 (17%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+EFE+V Y ++LKD + ++ G +A+VG +G+GKST + L+ G V
Sbjct: 322 LEFENVSKGYDGGR--LLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 415 RI-DGVDIRRLQLKWVRREMGLVSQEHA-LFG-TSIKDNIMFGKLDATMDEVIAAATAAN 471
++ + V I G Q L ++ + + G D EV
Sbjct: 380 KVGETVKI------------GYFDQHRDELDPDKTVLEELSEGFPDGDEQEV-------- 419
Query: 472 AHNFIRQL---PEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSES 528
++ + E E VG LSGG+K R+ +A+ +++ P +LLLDE T+ LD ES
Sbjct: 420 -RAYLGRFGFTGEDQEKPVGV----LSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIES 474
Query: 529 ETLVQNALDQASLGRTTLVVAH 550
++ AL G T L+V+H
Sbjct: 475 LEALEEALLDFE-G-TVLLVSH 494
|
Length = 530 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 3e-16
Identities = 55/217 (25%), Positives = 99/217 (45%), Gaps = 16/217 (7%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK 1068
+L S++++PG + ++G +G GKST++ + + G V ++G+ + +
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 1069 HTALVSQE-PVIYAGNIRDNIVFGKL-DASENEVVEAARAANAHEFISSLKDGYETECGE 1126
H A++ Q + + +++ + G++ S E E R A + L G
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDL-SGLA----G 130
Query: 1127 RGVQ-LSGGQRQRIAIAR------AIIRNPTILLLDEATSALDV-QSEQVVQEALDRIMM 1178
R + LSGG++QR+ +AR + + L LDE TSALD+ ++ A
Sbjct: 131 RDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE 190
Query: 1179 GRTTIVVAHRLN-TIKKLDSIALVADGRVVERGTYAQ 1214
G + V H LN + D I L+ GRV+ G+
Sbjct: 191 GGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227
|
Length = 259 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 3e-16
Identities = 63/227 (27%), Positives = 106/227 (46%), Gaps = 41/227 (18%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK 1068
V+ S+ VK G VGL+G +G GK+T +I + G + +DG D+ +L +H R
Sbjct: 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMH-KRA 73
Query: 1069 HTAL--VSQEPVIYAG-NIRDNI-----VFGKLDASENEVVEAARAANAHEF-ISSLKDG 1119
+ + QE I+ + +NI + G E +E EF I+ L+
Sbjct: 74 RLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEEL----LEEFHITHLRK- 128
Query: 1120 YETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALD---VQSEQ-VVQEALDR 1175
+ LSGG+R+R+ IARA+ NP LLLDE + +D VQ Q +++ DR
Sbjct: 129 ------SKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDR 182
Query: 1176 ---IMMG----RTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQL 1215
+++ R T+ + R ++ +G+V+ GT ++
Sbjct: 183 GIGVLITDHNVRETLSITDR---------AYIIYEGKVLAEGTPEEI 220
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 4e-16
Identities = 64/231 (27%), Positives = 97/231 (41%), Gaps = 12/231 (5%)
Query: 990 GKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQG 1049
G F R V + S E+ G VG +G +G GKST + ++ G
Sbjct: 21 GLKGSLNHFFHRKERSIEAV-QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSG 79
Query: 1050 SVRVDGMDVRELDVHWYRKHTALV--SQEPVIYAGNIRDNIVFGKLDASENEVVEAARAA 1107
VRV+G D Y + LV + + + D++ KL E+ + A
Sbjct: 80 KVRVNGKDPF-RRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY---EIPDDEFAE 135
Query: 1108 NAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQ 1167
L E +LS GQR R +A A++ P +L LDE T LDV ++
Sbjct: 136 RLDFLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQA 193
Query: 1168 VVQEALDRIMMGR-TTIVVA-HRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
++E L R T+++ H + I L D + L+ G++V GT AQL
Sbjct: 194 NIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQL 244
|
Length = 325 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 4e-16
Identities = 60/230 (26%), Positives = 105/230 (45%), Gaps = 21/230 (9%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
+EMR + +P + S+ VK G L+G++G GKST++ ++ Y + G +
Sbjct: 5 LEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 1052 RVDGMDVRELDVHWYRKH-TALVSQEPVIYAG-NIRDNIVFGKLDASENEVVEAARAANA 1109
RVDG +VR + +V Q ++ + +NI+ G E A
Sbjct: 62 RVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILG----LEPSKGGLIDRRQA 117
Query: 1110 HEFISSLKD--GYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQ 1167
I L + G + + LS G++QR+ I +A+ R +L+LDE T+ L + Q
Sbjct: 118 RARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVL---TPQ 174
Query: 1168 VVQEALDRIM----MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTY 1212
E + + G+T I + H+L + + D + ++ G+VV GT
Sbjct: 175 EADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV--GTV 222
|
Length = 501 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 5e-16
Identities = 57/212 (26%), Positives = 106/212 (50%), Gaps = 15/212 (7%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDV----RELDVHW 1065
+ + E + G +VG++G GKST+I I G+V VD + + ++ +
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
Query: 1066 YRKHTALVSQ--EPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETE 1123
RK +V Q E ++ + I+FG + N ++ + AH + L G+ +
Sbjct: 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMN--LDEVKN-YAHRLLMDL--GFSRD 137
Query: 1124 CGERG-VQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GR 1180
+ Q+SGGQ ++IAI + NP I++LDE T+ LD QS++ V L + +
Sbjct: 138 VMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENK 197
Query: 1181 TTIVVAHRLNTIKK-LDSIALVADGRVVERGT 1211
T I+V+H +N + + D + ++ +G +V + +
Sbjct: 198 TIILVSHDMNEVARYADEVIVMKEGSIVSQTS 229
|
Length = 286 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.6 bits (196), Expect = 5e-16
Identities = 66/221 (29%), Positives = 103/221 (46%), Gaps = 36/221 (16%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDA-----DDGIVRIDGVDI--RRLQ 425
+K N + + A++G SG GKST + + R D G + DG DI +
Sbjct: 55 VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114
Query: 426 LKWVRREMGLVSQEHALFGTSIKDNIMFG-KLDATMDEVIAAATAANAHNFIRQLPEGYE 484
+R+++G+V Q+ F SI DNI +G +L D+ +QL E E
Sbjct: 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDK--------------KQLEEIVE 160
Query: 485 TKVG------------ERGAL-LSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETL 531
+ ++ AL LSGGQ+QR+ +AR + P ILLLDE TSALD ++
Sbjct: 161 KSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAK 220
Query: 532 VQNALDQASLGRTTLVVAHKLSTV-RNADLIAVVDNGCLVE 571
+++ + + T ++V H + R +D G LVE
Sbjct: 221 IEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVE 261
|
Length = 286 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 5e-16
Identities = 50/178 (28%), Positives = 88/178 (49%), Gaps = 20/178 (11%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+ E++ Y R V+ +L VK G+ V L+G +G+GK+T ++ D G +
Sbjct: 1 LRAENLSKRYGKRK---VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKI 57
Query: 415 RIDGVDIRRLQL-KWVRREMGLVSQEHALF-GTSIKDNIM-----FGKLDATMDEVIAAA 467
+DG DI +L + K R +G + QE ++F ++++NI+ G +E +
Sbjct: 58 LLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEEL 117
Query: 468 TAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALD 525
+R+ + + LSGG+++R+ IARA+ NP LLLDE + +D
Sbjct: 118 LEEFHITHLRK----------SKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVD 165
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 7e-16
Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 30/218 (13%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQ------- 425
LK+ NL + + A++G SG GKST I + R + V+ G + R Q
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPS-VKTTGKILYRDQNIFDKSY 98
Query: 426 -LKWVRREMGLVSQEHALFGTSIKDNIMFG------KLDATMDEVIAAATAANAHNFIRQ 478
++ +R +G+V Q+ F SI DN+ +G K T+DE++ + A
Sbjct: 99 SVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAA------ 152
Query: 479 LPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSES----ETLVQN 534
+ + + ++ + LSGGQ+QR+ IAR + P ++L+DE TSALD S E LVQ
Sbjct: 153 IWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQE 212
Query: 535 ALDQASLGRTTLVVAHKL-STVRNADLIAVVDNGCLVE 571
S+ ++V H + R +D A NG + E
Sbjct: 213 LKKDYSI----IIVTHNMQQAARISDKTAFFLNGYVNE 246
|
Length = 271 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 7e-16
Identities = 49/209 (23%), Positives = 96/209 (45%), Gaps = 43/209 (20%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRF--YDVEQGSVRVDGMDVRELDVH-W 1065
+L+ ++ +K G L+G +G GKST+ I Y+V +G + G D+ +L
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEER 74
Query: 1066 YRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECG 1125
R L Q P G +++ +F+ + +G
Sbjct: 75 ARLGIFLAFQYPPEIPG-VKNA-----------------------DFLRYVNEG------ 104
Query: 1126 ERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIV 1184
SGG+++R I + ++ P + +LDE S LD+ + ++V E ++++ G++ ++
Sbjct: 105 -----FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLI 159
Query: 1185 VAHR---LNTIKKLDSIALVADGRVVERG 1210
+ H L+ IK D + ++ DGR+V+ G
Sbjct: 160 ITHYQRLLDYIKP-DRVHVLYDGRIVKSG 187
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 8e-16
Identities = 74/234 (31%), Positives = 121/234 (51%), Gaps = 37/234 (15%)
Query: 995 RRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKST----VIGLIQRFYDVEQGS 1050
R VD V++ S ++PG ++GLVG+SG GKST ++ LI QG
Sbjct: 294 RTVDHNV-------VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-----SQGE 341
Query: 1051 VRVDGMDVRELDVHW---YRKHTALVSQEPVIYAGNIRDN---IVFGKLDASENEVVEAA 1104
+ DG + L+ R +V Q+P + N R N I+ L + + A
Sbjct: 342 IWFDGQPLHNLNRRQLLPVRHRIQVVFQDPN-SSLNPRLNVLQIIEEGLRVHQPTLSAAQ 400
Query: 1105 RAANAHEFISSLKD-GYETECGER-GVQLSGGQRQRIAIARAIIRNPTILLLDEATSALD 1162
R + I+ +++ G + E R + SGGQRQRIAIARA+I P++++LDE TS+LD
Sbjct: 401 REQ---QVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
Query: 1163 --VQSEQVVQEALDRIMMGR---TTIVVAHRLNTIKKL-DSIALVADGRVVERG 1210
VQ+ Q++ AL + + + + ++H L+ ++ L + ++ G VVE+G
Sbjct: 458 KTVQA-QIL--ALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQG 508
|
Length = 529 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 1e-15
Identities = 77/251 (30%), Positives = 115/251 (45%), Gaps = 29/251 (11%)
Query: 360 VKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKS-TAIALVQ----RFYDADDGIV 414
V F +K + ++AG+++ALVG SGSGKS TA++++ G +
Sbjct: 14 VAFHQEGG-TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSI 72
Query: 415 RIDGVDIRRL---QLKWVR-REMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAA 470
DG D+ QL+ VR ++G++ QE TS+ GK A + + + A
Sbjct: 73 LFDGEDLLAASERQLRGVRGNKIGMIFQEPM---TSLNPLHTIGKQLAEVLRLHRGLSRA 129
Query: 471 NAHNFIRQLPEGYETKVGERGA---------LLSGGQKQRIAIARAIIKNPVILLLDEAT 521
A +L E VG LSGGQ+QR+ IA A+ P +L+ DE T
Sbjct: 130 AARARALELLE----LVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPT 185
Query: 522 SALDSESETLVQNALD--QASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDL 578
+ALD + + + L QA LG L + H L VR AD + V+ +G +VE GT L
Sbjct: 186 TALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETL 245
Query: 579 INRIDGHYAKM 589
Y +
Sbjct: 246 FAAPQHPYTRK 256
|
Length = 534 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 2e-15
Identities = 64/234 (27%), Positives = 104/234 (44%), Gaps = 40/234 (17%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKS----TVIGLIQRFYDVE-QGSVRVDGMDVRELDV 1063
++ S +++ G ++ LVG+SG GKS +++GL+ GS+ DG D+
Sbjct: 25 AVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84
Query: 1064 HWYRK----HTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAAR------AANAHEFI 1113
R ++ QEP+ + N I ++ E R A A
Sbjct: 85 RQLRGVRGNKIGMIFQEPMT-SLNPLHTI--------GKQLAEVLRLHRGLSRAAARARA 135
Query: 1114 SSLKDGYETECGERGV-----QLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQV 1168
L + E+ + +LSGGQRQR+ IA A+ P +L+ DE T+ALDV
Sbjct: 136 LELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDV----T 191
Query: 1169 VQ-EALDRIM-----MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
VQ + LD + +G + + H L ++K D + ++ G +VE GT L
Sbjct: 192 VQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETL 245
|
Length = 534 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 2e-15
Identities = 55/226 (24%), Positives = 102/226 (45%), Gaps = 23/226 (10%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+E E+V + L D + V+ G+ L+G +G+GK+T I ++ D G V
Sbjct: 1 LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV 57
Query: 415 RIDG--VDIRRLQLKWVRREMGLVSQEHALF-GTSIKDNIM-FGKLDATMDEVIAAATAA 470
DG +DI R +G + +E L+ + D ++ +L +
Sbjct: 58 LFDGKPLDIA------ARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG----LKKEEARR 107
Query: 471 NAHNFIRQLP-EGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESE 529
++ +L Y K E LS G +Q++ A+I +P +L+LDE S LD +
Sbjct: 108 RIDEWLERLELSEYANKRVEE---LSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNV 164
Query: 530 TLVQNAL-DQASLGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIG 573
L+++ + + A G+T ++ H++ V D + +++ G V G
Sbjct: 165 ELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 2e-15
Identities = 63/239 (26%), Positives = 118/239 (49%), Gaps = 26/239 (10%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
I E+V SY ++ VL D +L + G +++G +G+GKST ++++ R D G +
Sbjct: 2 ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQE-HALFGTSIKDNIMFGKLD------ATMDEVIAAA 467
IDG+++ K + +++ ++ QE H +++D + FG+ D I
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINE 118
Query: 468 TAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALD-- 525
H + L + Y + LSGGQ+QR IA + ++ +LLDE + LD
Sbjct: 119 AIEYLH--LEDLSDRYLDE-------LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMK 169
Query: 526 --SESETLVQNALDQASLGRTTLVVAHKLS-TVRNADLIAVVDNGCLVEIGTHNDLINR 581
+ +++ D+ LG+T +VV H ++ +D I + NG +V+ G+ +++I
Sbjct: 170 HSVQIMKILRRLADE--LGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226
|
Length = 252 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 2e-15
Identities = 66/217 (30%), Positives = 105/217 (48%), Gaps = 39/217 (17%)
Query: 1014 SMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALV 1073
S+ + G L+G SGCGKST++ ++ F G + +DG+D+ V Y++ ++
Sbjct: 39 SLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLS--HVPPYQRPINMM 96
Query: 1074 SQEPVIYAG-NIRDNIVFG----KLDASE--NEVVEAARAANAHEFISSLKDGYETECGE 1126
Q ++ + NI FG KL +E + V E + EF
Sbjct: 97 FQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEF-----------AKR 145
Query: 1127 RGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALD------VQSEQVVQEALDRIMMGR 1180
+ QLSGGQRQR+A+AR++ + P +LLLDE ALD +Q E V + L+R+ G
Sbjct: 146 KPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLE--VVDILERV--GV 201
Query: 1181 TTIVVAHRLNTIKKLDSIALVADGR--VVERGTYAQL 1215
T ++V H A+ GR ++ RG + Q+
Sbjct: 202 TCVMVTHDQEE-------AMTMAGRIAIMNRGKFVQI 231
|
Length = 377 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 2e-15
Identities = 62/222 (27%), Positives = 110/222 (49%), Gaps = 19/222 (8%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+E + +P + D +L VK G+ AL+G +G+GKST + ++ Y D G +
Sbjct: 5 LEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 415 RIDGVDIRRLQLK----WVRREMGLVSQEHALFGT-SIKDNIMFGKLDATMDEVIAAATA 469
R+DG + +++K +R +G+V Q L T ++ +NI+ G + +
Sbjct: 62 RVDG---KEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQAR 118
Query: 470 ANAHNFIRQ--LPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSAL-DS 526
A + LP + KV + LS G++QR+ I +A+ + +L+LDE T+ L
Sbjct: 119 ARIKELSERYGLPVDPDAKVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQ 174
Query: 527 ESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNG 567
E++ L + A+ G+T + + HKL V AD + V+ G
Sbjct: 175 EADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRG 216
|
Length = 501 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 2e-15
Identities = 57/220 (25%), Positives = 94/220 (42%), Gaps = 46/220 (20%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKST---AIALVQRFYDADDGIVRIDGVDIRRLQL-K 427
+LK NL +K G+ AL+G +GSGKST I + Y+ +G + G DI L +
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPK-YEVTEGEILFKGEDITDLPPEE 73
Query: 428 WVRREMGLVSQEHALF-GTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETK 486
R + L Q G D F+R + EG
Sbjct: 74 RARLGIFLAFQYPPEIPGVKNAD-------------------------FLRYVNEG---- 104
Query: 487 VGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQ-ASLGRTT 545
SGG+K+R I + ++ P + +LDE S LD ++ LV +++ G++
Sbjct: 105 -------FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSV 157
Query: 546 LVVAH--KLSTVRNADLIAVVDNGCLVEIGTHNDLINRID 583
L++ H +L D + V+ +G +V+ G +L I+
Sbjct: 158 LIITHYQRLLDYIKPDRVHVLYDGRIVKSGD-KELALEIE 196
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 2e-15
Identities = 56/191 (29%), Positives = 95/191 (49%), Gaps = 16/191 (8%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRL----QLK 427
VL + + + G+ +A+VG+SGSGKST + L+ G V +G + +L + +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 428 WVRREMGLVSQEHALFGTSIKDNIMFGKLD-ATMDEVIAAATAANAHNFIRQLPE--GYE 484
+++G + Q H L F L+ M +I A ++ ++ G E
Sbjct: 84 LRNQKLGFIYQFHHLLPD-------FTALENVAMPLLIGKKKPAEINSRALEMLAAVGLE 136
Query: 485 TKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRT 544
+ R + LSGG++QR+AIARA++ NP ++L DE T LD+ + + L + + +
Sbjct: 137 HRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQG 196
Query: 545 T--LVVAHKLS 553
T LVV H L
Sbjct: 197 TAFLVVTHDLQ 207
|
Length = 233 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 3e-15
Identities = 63/234 (26%), Positives = 109/234 (46%), Gaps = 25/234 (10%)
Query: 992 IEMRRVDFAYPSRPDA---LVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQ 1048
I+ + V + Y S ++ L L ++EVK G + ++G++G GKST+ + +
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 1049 GSVRVDGMDVRELDVHW-YRKHTALVSQEP--VIYAGNIRDNIVFGK----LDASE--NE 1099
G V VDG+D + + W R +V Q P I A + +++ FG + E
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER 124
Query: 1100 VVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATS 1159
V E+ + +E+ + + LSGGQ+QR+AIA + P ++ DE T+
Sbjct: 125 VDESLKKVGMYEY----RR-HAPHL------LSGGQKQRVAIAGILAMRPECIIFDEPTA 173
Query: 1160 ALDVQSEQVVQEALDRI--MMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGT 1211
LD + V + + G T I++ H + + D I ++ G+VV GT
Sbjct: 174 MLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGT 227
|
Length = 280 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.7 bits (190), Expect = 3e-15
Identities = 65/235 (27%), Positives = 103/235 (43%), Gaps = 41/235 (17%)
Query: 1003 SRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELD 1062
+L S+ ++PG V ++G +G GKST++ + + G VR++G + +
Sbjct: 11 RLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWS 70
Query: 1063 VHWYRKHTALVSQEPVI-YAGNIRDNIVFGKLD--ASENEVVEAARAANAHEFISSLKDG 1119
+ A++ Q + + + + + G+ S E AA A
Sbjct: 71 PAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALA---------- 120
Query: 1120 YETEC---GERGV-QLSGGQRQRIAIARAIIR------NPTILLLDEATSALDVQSEQVV 1169
+ + R QLSGG++QR+ +AR + + P LLLDE TSALD+ + V
Sbjct: 121 -QVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHV 179
Query: 1170 -----QEALDRIMMGRTTIVVAHRLNTIKKL-----DSIALVADGRVVERGTYAQ 1214
Q A +R G IVV H LN L D I L+ GR+V GT A+
Sbjct: 180 LRLARQLAHER---GLAVIVVLHDLN----LAARYADRIVLLHQGRLVADGTPAE 227
|
Length = 258 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 3e-15
Identities = 61/197 (30%), Positives = 93/197 (47%), Gaps = 24/197 (12%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK 1068
L S+E+ G V ++G +G GKST++ I G + +DG+DV + V
Sbjct: 21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80
Query: 1069 HTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAAR--------AANAH------EFIS 1114
A V Q+P+ AG +L EN + +R A N E ++
Sbjct: 81 LLARVFQDPL--AG------TAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLA 132
Query: 1115 SLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALD 1174
L G E +R LSGGQRQ +++ A + P ILLLDE T+ALD ++ + V E
Sbjct: 133 RLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTA 192
Query: 1175 RIMMGR--TTIVVAHRL 1189
+I+ TT++V H +
Sbjct: 193 KIVEEHKLTTLMVTHNM 209
|
Length = 263 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 3e-15
Identities = 65/229 (28%), Positives = 117/229 (51%), Gaps = 26/229 (11%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
I+ R V+ Y D LV+ S V+ G GL+G +G GK+T + ++ + GS+
Sbjct: 8 IDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQ----EPVIYAGNIRDNI-VFGK---LDASENEVVEA 1103
+ G V R+ +V Q +P +R+N+ VFG+ L A+
Sbjct: 65 SLCGEPVPS-RARHARQRVGVVPQFDNLDPDF---TVRENLLVFGRYFGLSAAAAR---- 116
Query: 1104 ARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDV 1163
A EF + L++ + + GE LSGG ++R+ +ARA++ +P +L+LDE T+ LD
Sbjct: 117 ALVPPLLEF-AKLENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDP 171
Query: 1164 QSEQVVQEALDRIMM-GRTTIVVAHRLNTIKKL-DSIALVADGRVVERG 1210
Q+ ++ E L ++ G+T ++ H + ++L D + ++ +GR + G
Sbjct: 172 QARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEG 220
|
Length = 306 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 4e-15
Identities = 56/202 (27%), Positives = 89/202 (44%), Gaps = 30/202 (14%)
Query: 368 PDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAD---DGIVRIDGVDIRRL 424
P S +L + N + G+ V L+G SG GKST ++ + G + ++ + L
Sbjct: 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDML 72
Query: 425 QLKWVRREMGLVSQEHALFGT-SIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGY 483
+R++G++ Q+ LF S+ N++F + A NA R
Sbjct: 73 PAA--QRQIGILFQDALLFPHLSVGQNLLFA---------LPATLKGNAR---RNAANAA 118
Query: 484 ETKVGERGAL------LSGGQKQRIAIARAIIKNPVILLLDEATSALD----SESETLVQ 533
+ G GA LSGGQ+ R+A+ RA++ P LLLDE S LD + V
Sbjct: 119 LERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVF 178
Query: 534 NALDQASLGRTTLVVAHKLSTV 555
+ + + G T+ V H L V
Sbjct: 179 SEV--RAAGIPTVQVTHDLQDV 198
|
Length = 213 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 5e-15
Identities = 60/247 (24%), Positives = 118/247 (47%), Gaps = 22/247 (8%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
+++ +++ Y AL + ++ +K G ++G +G GKST+ + G +
Sbjct: 6 LKVEELNYNYSDGTHAL--KGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 1052 RVDG--MDVRELDVHWYRKHTALVSQEP--VIYAGNIRDNIVFGKLDAS--ENEVVEAAR 1105
DG +D + R+ +V Q+P +++ ++ ++ FG ++ E+EV +
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVD 123
Query: 1106 AANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQS 1165
A I LKD T C LS GQ++R+AIA ++ P +L+LDE T+ LD
Sbjct: 124 NALKRTGIEHLKDK-PTHC------LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMG 176
Query: 1166 EQVVQEALDRIM--MGRTTIVVAHRLNTIK-KLDSIALVADGRVVERGT----YAQLTHM 1218
+ + L + +G T I+ H ++ + D++ ++ +GRV+ +G +A+ +
Sbjct: 177 VSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEML 236
Query: 1219 RGAFFNL 1225
R L
Sbjct: 237 RKVNLRL 243
|
Length = 283 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 6e-15
Identities = 61/213 (28%), Positives = 98/213 (46%), Gaps = 26/213 (12%)
Query: 1014 SMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVREL----DVHWYRKH 1069
++ ++ G+ +G +G GKST++ L+ + QGSVRVD + D+ RK
Sbjct: 27 NLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKK 86
Query: 1070 TALVSQ--EPVIYAGNIRDNIVFG--KLDASENEVVEAARAANAHEFISSLKDGYETECG 1125
LV Q E ++ + ++ FG S+ E AR A IS E+
Sbjct: 87 VGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGIS------ESLFE 140
Query: 1126 ERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVV 1185
+ +LSGGQ +R+AIA + P IL+LDE T+ LD + + + ++ TIV+
Sbjct: 141 KNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVL 200
Query: 1186 AHRLNTIKKLDSIALVAD-------GRVVERGT 1211
L +D +A AD G++V G
Sbjct: 201 VTHL-----MDDVANYADFVYVLEKGKLVLSGK 228
|
Length = 280 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 6e-15
Identities = 59/235 (25%), Positives = 101/235 (42%), Gaps = 38/235 (16%)
Query: 987 KISGK--IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFY 1044
K GK +E V Y L+L+ S + G + +VG +G GKST++ L+
Sbjct: 315 KRLGKLVLEFENVSKGYDGGR--LLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGEL 372
Query: 1045 DVEQGSVRV-DGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEA 1103
G+V+V + + + D H L + V+ + + G D E EV
Sbjct: 373 GPLSGTVKVGETVKIGYFDQHR----DELDPDKTVLE--ELSE----GFPDGDEQEVRAY 422
Query: 1104 ARAAN-----AHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEAT 1158
+ + LSGG++ R+ +A+ +++ P +LLLDE T
Sbjct: 423 LGRFGFTGEDQEKPVGV---------------LSGGEKARLLLAKLLLQPPNLLLLDEPT 467
Query: 1159 SALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTY 1212
+ LD++S + ++EAL G T ++V+H + ++ I LV D G Y
Sbjct: 468 NHLDIESLEALEEALLD-FEG-TVLLVSHDRYFLDRVATRIWLVEDKVEEFEGGY 520
|
Length = 530 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 8e-15
Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 20/164 (12%)
Query: 1006 DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW 1065
V+ ++ +K GT V L+G SGCGK+TV+ L+ +G + +DG DV +
Sbjct: 18 SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ- 76
Query: 1066 YRKHTALVSQEPVIYA----GNIRDNIVFG--KLDASENEVVEAARAANAHEFISSLKDG 1119
++ +V Q YA ++ +N+ +G L + E + R A E + G
Sbjct: 77 -QRDICMVFQS---YALFPHMSLGENVGYGLKMLGVPKEERKQ--RVKEALELVDL--AG 128
Query: 1120 YETECGERGV-QLSGGQRQRIAIARAIIRNPTILLLDEATSALD 1162
+E +R V Q+SGGQ+QR+A+ARA+I P +LL DE S LD
Sbjct: 129 FE----DRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLD 168
|
Length = 351 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 8e-15
Identities = 65/230 (28%), Positives = 111/230 (48%), Gaps = 14/230 (6%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
IE R + ++Y +AL F + + ++G +G GKST+ GSV
Sbjct: 4 IETRDLCYSYSGSKEALNNINFIAPRN--SRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEP--VIYAGNIRDNIVFGKLDASENEVVEAARAANA 1109
+ G + + ++ RK LV Q P I++ + +I FG ++ +E A
Sbjct: 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDE------ETVA 115
Query: 1110 HEFISSLKDGYETECGERGVQ-LSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQV 1168
H S+L E +R LSGG+++R+AIA I P +L+LDE T+ LD Q +
Sbjct: 116 HRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKE 175
Query: 1169 VQEALDRIMM--GRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
+ + L+ + G T I H+L+ + ++ D I ++ GR+V GT ++
Sbjct: 176 LIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225
|
Length = 277 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 8e-15
Identities = 62/247 (25%), Positives = 111/247 (44%), Gaps = 39/247 (15%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
I E++ +S R +L +L ++ G+ +A++G +G+GKST + + D G V
Sbjct: 2 IRAENLSYSLAGRR---LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV 58
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHAL-FGTSIKDNIMFGKL------DATMDEVIAAA 467
++GV + + + R ++ Q +L F ++++ + G++ + DE IAA
Sbjct: 59 TLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQ 118
Query: 468 TAAN------AHNFIRQLPEGYETKVGERGALLSGGQKQRIAIAR------AIIKNPVIL 515
A A R LSGG++QR+ +AR + + L
Sbjct: 119 ALAATDLSGLAGRDYRT---------------LSGGEQQRVQLARVLAQLWPPVPSGRWL 163
Query: 516 LLDEATSALD-SESETLVQNALDQASLGRTTLVVAHKLS-TVRNADLIAVVDNGCLVEIG 573
LDE TSALD + ++ A A G L V H L+ + AD I ++ G ++ G
Sbjct: 164 FLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASG 223
Query: 574 THNDLIN 580
+ D++
Sbjct: 224 SPQDVLT 230
|
Length = 259 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 1e-14
Identities = 62/218 (28%), Positives = 110/218 (50%), Gaps = 19/218 (8%)
Query: 1010 LRQFSMEVK---PGTSV-GLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRE----L 1061
L FS++ PG V + G+SG GK+T+I LI ++G + ++G + + +
Sbjct: 9 LGDFSLDADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGI 68
Query: 1062 DVHWYRKHTALVSQEPVIYAG-NIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGY 1120
+ ++ V QE ++ ++R N+ +G A +E R + I L G
Sbjct: 69 FLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSE-----RRISFERVIELL--GI 121
Query: 1121 ETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--M 1178
G +LSGG++QR+AI RA++ +P +LL+DE +ALD + + L+R+
Sbjct: 122 GHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF 181
Query: 1179 GRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
G + V+H L + +L D + ++ DGRV G A++
Sbjct: 182 GIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEV 219
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 1e-14
Identities = 58/243 (23%), Positives = 119/243 (48%), Gaps = 32/243 (13%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
I++ ++ Y + L +++ G ++ L+G SG GKS+++ ++ G++
Sbjct: 3 IQLNGINCFYGAHQ---ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 1052 RVDGMD-----------VRELDVHWYRKHTALVSQEPVIYAG-NIRDNIVFGK---LDAS 1096
+ G +R+L R++ +V Q+ ++ +++N++ L S
Sbjct: 60 NIAGNHFDFSKTPSDKAIRDL-----RRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLS 114
Query: 1097 ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDE 1156
+++ + A A + + L+ + + LSGGQ+QR+AIARA++ P +LL DE
Sbjct: 115 KDQAL-----ARAEKLLKRLR--LKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDE 167
Query: 1157 ATSALDVQ-SEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDS-IALVADGRVVERGTYAQ 1214
T+ALD + + Q+V + G T ++V H + +K S + + +G +VE+G +
Sbjct: 168 PTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227
Query: 1215 LTH 1217
T
Sbjct: 228 FTE 230
|
Length = 242 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 1e-14
Identities = 61/224 (27%), Positives = 103/224 (45%), Gaps = 11/224 (4%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
I + V ++YP AL ++ +K G +G++GK+G GKST+ + ++G V
Sbjct: 2 IRLENVSYSYPDGTPAL--ENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 1052 RVDGMDVRELD-VHWYRKHTALVSQEP-VIYAG-NIRDNIVFGKLDASENEVVEAARAAN 1108
V G+D + + RK +V Q P + G + +++ FG + + R
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDR 119
Query: 1109 AHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQV 1168
A I K + + LSGGQ Q +A+A + P L+ DE TS LD S
Sbjct: 120 ALAEIGLEKYRHRSP-----KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIA 174
Query: 1169 VQEALDRIM-MGRTTIVVAHRLNTIKKLDSIALVADGRVVERGT 1211
V E + ++ G+T + + H L + D I ++ G++V G
Sbjct: 175 VLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGE 218
|
Length = 274 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 1e-14
Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 17/231 (7%)
Query: 988 ISGKIEMRRVDFAYPSRP--DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD 1045
I G + +D A S+ D V+ S V G GL+G +G GKST+ +I
Sbjct: 33 IPGSMSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS 92
Query: 1046 VEQGSVRVDGMDVRELDVHWYRKHTALVSQ-EPVIYAGNIRDN-IVFGKLDASENEVVEA 1103
+ G + V G+ V R +V Q + + +R+N +VFG+ +EA
Sbjct: 93 PDAGKITVLGVPVPA-RARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEA 151
Query: 1104 ARAANAHEFISSLKD--GYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSAL 1161
I SL + E++ R LSGG ++R+ +ARA+I +P +L+LDE T+ L
Sbjct: 152 V--------IPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGL 203
Query: 1162 DVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERG 1210
D + ++ E L ++ G+T ++ H + ++L D + ++ GR + G
Sbjct: 204 DPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEG 254
|
Length = 340 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 1e-14
Identities = 67/226 (29%), Positives = 106/226 (46%), Gaps = 31/226 (13%)
Query: 1006 DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW 1065
D ++ + ++++ G V VG SGCGKST++ +I D+ G + + + R DV
Sbjct: 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIG--EKRMNDVPP 72
Query: 1066 YRKHTALVSQEPVIYAG-NIRDNIVFG-KLDASENEVVEAARAANAHEFISSLKDGYETE 1123
+ +V Q +Y ++ +N+ FG KL A + R E L+ + +
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFGLKL-AGAKKEEINQRVNQVAEV---LQLAHLLD 128
Query: 1124 CGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM----- 1178
+ LSGGQRQR+AI R ++ P++ LLDE S LD AL R+ M
Sbjct: 129 --RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA--------AL-RVQMRIEIS 177
Query: 1179 ------GRTTIVVAH-RLNTIKKLDSIALVADGRVVERGTYAQLTH 1217
GRT I V H ++ + D I ++ GRV + G +L H
Sbjct: 178 RLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223
|
Length = 369 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 1e-14
Identities = 65/219 (29%), Positives = 109/219 (49%), Gaps = 21/219 (9%)
Query: 375 DFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRI-DG---VDIRRLQLKWVR 430
+ +L ++ G+ L+G SGSGKST + V G V + DG VD+ +R
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLR 101
Query: 431 R----EMGLVSQEHALFG-TSIKDNIMFGKLDATMDEVIAAATAANAHNFIR--QLPEGY 483
R + +V Q+ AL ++++N+ FG M + A + L +
Sbjct: 102 RLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPK---AERRKRVDEQLELVGLAQWA 158
Query: 484 ETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALD--QASL 541
+ K GE LSGG +QR+ +ARA ILL+DE SALD T +Q+ L Q+ L
Sbjct: 159 DRKPGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKL 214
Query: 542 GRTTLVVAHKL-STVRNADLIAVVDNGCLVEIGTHNDLI 579
+T + V+H L ++ + IA+++ G +++ GT +++
Sbjct: 215 KKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIV 253
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 1e-14
Identities = 59/227 (25%), Positives = 106/227 (46%), Gaps = 38/227 (16%)
Query: 367 RPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADD----GIVRIDGVDIR 422
RP +LK+ + K G+ +A++G+SG+GK+T + + F G V ++G
Sbjct: 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNG---M 90
Query: 423 RLQLKWVRREMGLVSQEHALFGT-SIKDNIMFG---KLDATM---------DEVIAAATA 469
+ K +R V Q+ T ++++++MF ++ + DEV+ A
Sbjct: 91 PIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGL 150
Query: 470 ANAHNFIRQLPEGYETKVGERGAL--LSGGQKQRIAIARAIIKNPVILLLDEATSALDSE 527
N T++G G + LSGG+++R+A A ++ +P +L DE TS LDS
Sbjct: 151 RKCAN----------TRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSF 200
Query: 528 S-ETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIG 573
++VQ A G+T + H+ S ++L + D L+ G
Sbjct: 201 MAYSVVQVLKGLAQKGKTIICTIHQPS----SELFELFDKIILMAEG 243
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 1e-14
Identities = 58/187 (31%), Positives = 91/187 (48%), Gaps = 38/187 (20%)
Query: 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
++++ V +Y V++ ++V G + LVG SGCGKST++ ++ + G
Sbjct: 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGE 60
Query: 1051 VRVDGMDVREL-----DVHWYRKHTALVSQEPVIYA----GNIRDNIVFG----KLDASE 1097
+ + G V EL D+ A+V Q YA ++R+N+ +G + +E
Sbjct: 61 IWIGGRVVNELEPADRDI-------AMVFQN---YALYPHMSVRENMAYGLKIRGMPKAE 110
Query: 1098 NE--VVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLD 1155
E V EAAR + L D + +LSGGQRQR+A+ RAI+R P + L D
Sbjct: 111 IEERVAEAARILE----LEPLLD-------RKPRELSGGQRQRVAMGRAIVREPAVFLFD 159
Query: 1156 EATSALD 1162
E S LD
Sbjct: 160 EPLSNLD 166
|
Length = 356 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 1e-14
Identities = 55/217 (25%), Positives = 89/217 (41%), Gaps = 42/217 (19%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK 1068
L+ S E+ G VG++G +G GKST++ LI Y G V+V G +++
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELG---- 97
Query: 1069 HTALVSQEPVIYAGNIRDNIVFGKL---------DASENEVVEAARAANAHEFISSLKDG 1119
+P + R+NI L D +E++E A +FI
Sbjct: 98 ----AGFDPELTG---RENIYLRGLILGLTRKEIDEKVDEIIEFA---ELGDFIDQPVKT 147
Query: 1120 YETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-- 1177
Y S G R+A + A P ILLLDE + D ++ L+R+
Sbjct: 148 Y-----------SSGMYARLAFSVATHVEPDILLLDEVLAVGD---AAFQEKCLERLNEL 193
Query: 1178 --MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGT 1211
+T ++V+H L IK+ D + G++ G+
Sbjct: 194 VEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGS 230
|
Length = 249 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 75.0 bits (184), Expect = 2e-14
Identities = 58/211 (27%), Positives = 104/211 (49%), Gaps = 15/211 (7%)
Query: 1006 DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW 1065
D +V+ S + G GL+G +G GKST+ ++ ++G + V G V
Sbjct: 16 DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPS-RARL 74
Query: 1066 YRKHTALVSQ-EPVIYAGNIRDNI-VFGKLDASENEVVEAARAANAHEFISSLKD--GYE 1121
R +V Q + + +R+N+ VFG+ +EA I SL + E
Sbjct: 75 ARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAV--------IPSLLEFARLE 126
Query: 1122 TECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGR 1180
++ R LSGG ++R+ +ARA+I +P +L+LDE T+ LD + ++ E L ++ G+
Sbjct: 127 SKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGK 186
Query: 1181 TTIVVAHRLNTIKKL-DSIALVADGRVVERG 1210
T ++ H + ++L D + ++ GR + G
Sbjct: 187 TILLTTHFMEEAERLCDRLCVLESGRKIAEG 217
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.2 bits (182), Expect = 2e-14
Identities = 62/218 (28%), Positives = 109/218 (50%), Gaps = 18/218 (8%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQL-KWVR 430
V++D +L V +G+ V L+G +G+GK+T +V D G + ID DI L L R
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77
Query: 431 REMGLVSQEHALFGT-SIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETK--V 487
R +G + QE ++F S+ DN+M + ++ +A + +L E + +
Sbjct: 78 RGIGYLPQEASIFRRLSVYDNLM------AVLQIRDDLSAEQREDRANELMEEFHIEHLR 131
Query: 488 GERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSES----ETLVQNALDQASLGR 543
G LSGG+++R+ IARA+ NP +LLDE + +D S + ++++ D G
Sbjct: 132 DSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDS---GL 188
Query: 544 TTLVVAHKL-STVRNADLIAVVDNGCLVEIGTHNDLIN 580
L+ H + T+ + +V G L+ GT +++
Sbjct: 189 GVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226
|
Length = 241 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 2e-14
Identities = 58/217 (26%), Positives = 102/217 (47%), Gaps = 19/217 (8%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLI--QRFYDVEQGSVRVDGMDVRELDVH-W 1065
+L+ ++ VK G ++G +G GKST+ I Y+V G++ G D+ EL+
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDER 74
Query: 1066 YRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAAN--AHEFISSLKD----- 1118
R L Q P G N+ F L ++ N A +F+ LK
Sbjct: 75 ARAGLFLAFQYPEEIPG--VSNLEF--LRSALNARRSARGEEPLDLLDFLKLLKAKLALL 130
Query: 1119 GYETECGERGVQ--LSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRI 1176
G + E R V SGG+++R I + + P + +LDE S LD+ + ++V E ++R+
Sbjct: 131 GMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRL 190
Query: 1177 MM-GRTTIVVAHRLNTIKKL--DSIALVADGRVVERG 1210
R+ +++ H + + D + ++ DGR+V+ G
Sbjct: 191 REPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 2e-14
Identities = 68/245 (27%), Positives = 109/245 (44%), Gaps = 38/245 (15%)
Query: 994 MRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRV 1053
+R V F P R +L S+ G GL+G +G GKST++ ++ R +G + +
Sbjct: 14 LRNVSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70
Query: 1054 DGMDVRELDVHWYRKHTALVSQE-PVIYAGNIRDNI---------VFGKLDASENEVVEA 1103
D + + + A + Q+ P +R+ + G+ A++ E VE
Sbjct: 71 DAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEE 130
Query: 1104 ARA-----ANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEAT 1158
A + AH + SL SGG+RQR IA + ++ LLLDE T
Sbjct: 131 AISLVGLKPLAHRLVDSL---------------SGGERQRAWIAMLVAQDSRCLLLDEPT 175
Query: 1159 SALDVQSEQVVQEALDRI--MMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
SALD+ + V + R+ G T I V H +N + D + + G ++ +GT A+L
Sbjct: 176 SALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
Query: 1216 THMRG 1220
MRG
Sbjct: 236 --MRG 238
|
Length = 265 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 3e-14
Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 39/224 (17%)
Query: 371 IVLKDFNLKVKAGKSVALVGASGSGKST---AIALVQRFYDADDGIVRIDGVDIRRLQLK 427
+L D +L V++G+ +A++G+SGSGK+T AI+ G + +G + Q
Sbjct: 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQ-- 78
Query: 428 WVRREMGLVSQ-----------EHALFGTSIK-DNIMFGKLDATMDEVIAAATAAN---A 472
++ + V Q E + ++ + E + A
Sbjct: 79 -FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIG 137
Query: 473 HNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLV 532
N ++ + SGG+++R++IA ++ +P +L+LDE TS LDS + +
Sbjct: 138 GNLVKGI---------------SGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNL 182
Query: 533 QNALDQ-ASLGRTTLVVAHK--LSTVRNADLIAVVDNGCLVEIG 573
+ L Q A R ++ H+ R D I ++ +G +V G
Sbjct: 183 VSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 3e-14
Identities = 67/216 (31%), Positives = 106/216 (49%), Gaps = 32/216 (14%)
Query: 1014 SMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV-----RVDGMDVRELDVHWYRK 1068
S ++ PG ++ LVG+SG GKST + R + + G + R+D + +L R+
Sbjct: 344 SFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQA--LRR 401
Query: 1069 HTALVSQEPVIYAG-----NIRDNI-----VFGKLDASENEVVEAARAANAHEFISSLKD 1118
+ Q+P YA + D+I V G L AAR A E +
Sbjct: 402 DIQFIFQDP--YASLDPRQTVGDSIMEPLRVHGLLPGKA----AAARVAWLLERV----- 450
Query: 1119 GYETECGER-GVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQ-SEQVVQEALD-R 1175
G E R + SGGQRQRI IARA+ NP +++ DEA SALDV Q++ LD +
Sbjct: 451 GLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQ 510
Query: 1176 IMMGRTTIVVAHRLNTIKKLD-SIALVADGRVVERG 1210
G + ++H + ++++ +A++ G++VE G
Sbjct: 511 RDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIG 546
|
Length = 623 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.1 bits (179), Expect = 5e-14
Identities = 71/230 (30%), Positives = 109/230 (47%), Gaps = 33/230 (14%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMD---VRELD--- 1062
VL+ S++ G + ++G SG GKST + I +GS+ V+G VR+ D
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 1063 -------VHWYRKHTALVSQEPVIYAG-NIRDNIVFGK---LDASENEVVEAARAANAHE 1111
+ R +V Q +++ + +N++ L S+ E E A A
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKV 139
Query: 1112 FISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQE 1171
I E G+ V LSGGQ+QR++IARA+ P +LL DE TSALD ++V E
Sbjct: 140 GID------ERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALD---PELVGE 190
Query: 1172 ALDRIMM-----GRTTIVVAHRLNTIKKLDS-IALVADGRVVERGTYAQL 1215
L RIM G+T +VV H + + + S + + G++ E G QL
Sbjct: 191 VL-RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQL 239
|
Length = 257 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 5e-14
Identities = 69/242 (28%), Positives = 111/242 (45%), Gaps = 56/242 (23%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVE-----QGSVRVDGMDVRELDV 1063
V+ S++++ G ++ LVG+SG GKS I R G +R G +
Sbjct: 24 VVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83
Query: 1064 HWYRK----HTALVSQEPVIYAGNIRDNIVFGKLDASENEVV--------EAARAANAHE 1111
R A++ QEP++ + L+ EV+ EAAR E
Sbjct: 84 QTLRGVRGNKIAMIFQEPMVSLNPLHT------LEKQLYEVLSLHRGMRREAARG----E 133
Query: 1112 FISSLKDGYETECGER-GV------------QLSGGQRQRIAIARAIIRNPTILLLDEAT 1158
++ C +R G+ QLSGG+RQR+ IA A++ P +L+ DE T
Sbjct: 134 ILN---------CLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPT 184
Query: 1159 SALDV----QSEQVVQEALDRIMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYA 1213
+ALDV Q Q+++E + MG + + H L+ ++KL D +A++ +GR VE+ A
Sbjct: 185 TALDVSVQAQILQLLRELQQELNMG--LLFITHNLSIVRKLADRVAVMQNGRCVEQNRAA 242
Query: 1214 QL 1215
L
Sbjct: 243 TL 244
|
Length = 529 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 5e-14
Identities = 65/215 (30%), Positives = 106/215 (49%), Gaps = 27/215 (12%)
Query: 1014 SMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRV-DG---MDVRELDVHWYR-- 1067
S++++ G L+G SG GKST++ + V +GSV V DG +DV D R
Sbjct: 44 SLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRL 103
Query: 1068 --KHTALVSQE----PVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFIS--SLKDG 1119
++V Q+ P + +N+ FG L+ + +A R E + L
Sbjct: 104 RTHRVSMVFQQFALLPWR---TVEENVAFG-LEMQG--MPKAERRKRVDEQLELVGLAQW 157
Query: 1120 YETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-- 1177
+ + GE LSGG +QR+ +ARA ILL+DE SALD +Q+ L +
Sbjct: 158 ADRKPGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSK 213
Query: 1178 MGRTTIVVAHRLNTIKKLDS-IALVADGRVVERGT 1211
+ +T + V+H L+ K+ + IA++ GR+++ GT
Sbjct: 214 LKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGT 248
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 5e-14
Identities = 62/201 (30%), Positives = 91/201 (45%), Gaps = 23/201 (11%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRI----DGVDIRRLQLK 427
VL++ +L V AG+ V L G SGSGKST + + Y D+G + + + VD+ + +
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 428 WV----RREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAAN-AHNFIRQLPEG 482
V R +G VSQ F I LD + ++A A L
Sbjct: 86 EVLEVRRTTIGYVSQ----FLRVIP---RVSALDVVAEPLLARGVPREVARAKAADLLT- 137
Query: 483 YETKVGER-----GALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALD 537
+ ER A SGG++QR+ IAR I + ILLLDE T++LD+ + +V +
Sbjct: 138 -RLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIR 196
Query: 538 QASLGRTTLVVAHKLSTVRNA 558
+A LV VR A
Sbjct: 197 EAKARGAALVGIFHDEEVREA 217
|
Length = 235 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 5e-14
Identities = 61/255 (23%), Positives = 106/255 (41%), Gaps = 49/255 (19%)
Query: 369 DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQL-- 426
VLK+ + ++ G+ + ++G SG+GKS + +++ D G I + L
Sbjct: 12 GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLR----GMDQYEPTSGRIIYHVALCE 67
Query: 427 --KWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANA------------ 472
+V R + GT + + F L D++ A
Sbjct: 68 KCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLS---DKLRRRIRKRIAIMLQRTFALYGD 124
Query: 473 ----HNFIRQLPE-GYETKVGERGAL------------------LSGGQKQRIAIARAII 509
N + L E GYE K A+ LSGG+KQR+ +AR +
Sbjct: 125 DTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLA 184
Query: 510 KNPVILLLDEATSALDSESETLVQNALDQASL--GRTTLVVAHKLSTVRN-ADLIAVVDN 566
K P + L DE T LD ++ LV NAL++A G + ++ +H + + +D ++N
Sbjct: 185 KEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLEN 244
Query: 567 GCLVEIGTHNDLINR 581
G + E GT ++++
Sbjct: 245 GEIKEEGTPDEVVAV 259
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 6e-14
Identities = 59/167 (35%), Positives = 78/167 (46%), Gaps = 24/167 (14%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDV-----RELDV 1063
VL S+++ G V L+G SG GK+T++ +I G +R G DV R+ V
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKV 76
Query: 1064 HWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAA----RAANAHEFI--SSLK 1117
+ +H AL V DNI FG E AA + E + + L
Sbjct: 77 GFVFQHYALFRHMTVF------DNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA 130
Query: 1118 DGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQ 1164
D Y QLSGGQ+QR+A+ARA+ P ILLLDE ALD Q
Sbjct: 131 DRYPA-------QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 6e-14
Identities = 60/212 (28%), Positives = 98/212 (46%), Gaps = 26/212 (12%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK 1068
VL S + G + +VG SG GKST++ L+ G V +G + +L
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSS---AA 80
Query: 1069 HTALVSQE-PVIYA-----------GNIRDNIVFGKLDASENEVVEAARAANAHEFISSL 1116
L +Q+ IY N+ ++ GK +E + A E ++++
Sbjct: 81 KAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEIN-------SRALEMLAAV 133
Query: 1117 KDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRI 1176
G E R +LSGG+RQR+AIARA++ NP ++L DE T LD ++ + + L +
Sbjct: 134 --GLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGEL 191
Query: 1177 MMGRTT--IVVAHRLNTIKKLDSIALVADGRV 1206
+ T +VV H L K++ + DGR+
Sbjct: 192 NRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRL 223
|
Length = 233 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 7e-14
Identities = 62/233 (26%), Positives = 96/233 (41%), Gaps = 46/233 (19%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD----VEQGSVRVDGMDVRELDVHW 1065
L+ S KPG + ++G SG GK+T++ + F GSV ++GM + D
Sbjct: 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNGMPI---DAKE 96
Query: 1066 YRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEA-----------ARAANAHEFIS 1114
R +A V Q D++ L E+ + +A + E +
Sbjct: 97 MRAISAYVQQ----------DDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQ 146
Query: 1115 --SLKDGYETECGERGVQ--LSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQ 1170
L+ T G G LSGG+R+R+A A ++ +P +L DE TS LD V
Sbjct: 147 ALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVV 206
Query: 1171 EALDRIMMGRTTIVVAHRLNTIKK--------LDSIALVADGRVVERGTYAQL 1215
+ L + TI+ TI + D I L+A+GRV G+ Q
Sbjct: 207 QVLKGLAQKGKTIIC-----TIHQPSSELFELFDKIILMAEGRVAYLGSPDQA 254
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 58/247 (23%), Positives = 116/247 (46%), Gaps = 40/247 (16%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLI----------- 1040
I++ ++ Y + L +++ G ++ L+G SG GKS+++ ++
Sbjct: 3 IQLNGINCFYGAHQ---ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 1041 ---QRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAG-NIRDNIVFGK---L 1093
+D + +REL R++ +V Q+ ++ ++ N++ L
Sbjct: 60 NIAGNHFDFSK---TPSDKAIREL-----RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL 111
Query: 1094 DASENEVVEAARAANAHEFISSLKDGYETECGER-GVQLSGGQRQRIAIARAIIRNPTIL 1152
S+++ + A + + L+ +R + LSGGQ+QR+AIARA++ P +L
Sbjct: 112 GLSKDQALARAE-----KLLERLR---LKPYADRFPLHLSGGQQQRVAIARALMMEPQVL 163
Query: 1153 LLDEATSALDVQ-SEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDS-IALVADGRVVERG 1210
L DE T+ALD + + Q+V + G T ++V H + +K S + + +G +VE+G
Sbjct: 164 LFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223
Query: 1211 TYAQLTH 1217
+ T
Sbjct: 224 DASCFTQ 230
|
Length = 242 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 1e-13
Identities = 50/211 (23%), Positives = 93/211 (44%), Gaps = 16/211 (7%)
Query: 1006 DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW 1065
D + S EV PG GL+G +G GK+T +I + +G + +G L
Sbjct: 14 DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNG---GPLSQEI 70
Query: 1066 YRKHTALVSQEPVIYAGNIRDNIV-FGKLDA-SENEVVEAARA-ANAHEFISSLKDGYET 1122
+ L + + + D + +L + E+ + +A E + +
Sbjct: 71 KNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKE 130
Query: 1123 ECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRT 1181
LS G +Q+I A+I P +L+LDE S LD + +++++A+ + G T
Sbjct: 131 --------LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGAT 182
Query: 1182 TIVVAHRLNTIKKL-DSIALVADGRVVERGT 1211
I +HR+ +++L D + ++ G+ V GT
Sbjct: 183 IIFSSHRMEHVEELCDRLLMLKKGQTVLYGT 213
|
Length = 300 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 1e-13
Identities = 54/206 (26%), Positives = 96/206 (46%), Gaps = 12/206 (5%)
Query: 1015 MEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVS 1074
+ G +GL+G +G GK+T++ I +G+V+V G + +H V
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGK-----GWRHIGYVP 55
Query: 1075 QEPVI---YAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGV-Q 1130
Q + ++ ++ G+ + A+ +L+ TE +R V +
Sbjct: 56 QRHEFAWDFPISVAHTVMSGR--TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGE 113
Query: 1131 LSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIV-VAHRL 1189
LSGGQRQR+ +ARA+ P++LLLDE + LD+ +++++ E + T I+ H L
Sbjct: 114 LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDL 173
Query: 1190 NTIKKLDSIALVADGRVVERGTYAQL 1215
++ +GRV+ GT QL
Sbjct: 174 AQAMATCDRVVLLNGRVIADGTPQQL 199
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 2e-13
Identities = 59/220 (26%), Positives = 99/220 (45%), Gaps = 22/220 (10%)
Query: 366 SRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQ 425
D+ VL +L V+ G V LVG +G+GK+T + + G V + G D+ L
Sbjct: 12 EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71
Query: 426 LKWVRREMGLVSQEHAL-FGTSIKDNIMFGKLD-----ATMDEVIAAATAANAHNFIRQL 479
+ R + V Q+ +L F ++ + G+ T E AA R +
Sbjct: 72 ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVE-------RAM 124
Query: 480 PEGYETKVGERGAL-LSGGQKQRIAIARAIIKNPVILLLDEATSALDSESET----LVQN 534
+ +R LSGG++QR+ +ARA+ + +LLLDE T++LD + LV+
Sbjct: 125 ERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRR 184
Query: 535 ALDQASLGRTTLVVAHKLS-TVRNADLIAVVDNGCLVEIG 573
+D G+T + H L R D + ++ +G + G
Sbjct: 185 LVDD---GKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221
|
Length = 402 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 2e-13
Identities = 64/230 (27%), Positives = 108/230 (46%), Gaps = 39/230 (16%)
Query: 1000 AYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKST----VIGLIQRFYDVEQGSVRVDG 1055
AY R V+ S+ V G VGL+G +G GK+T V+G++ R + G++ +D
Sbjct: 12 AYKGRR---VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR----DAGNIIIDD 64
Query: 1056 MDVRELDVHWY-RKHTALVSQEPVIYAGNIRDNIVFGKLDAS---ENEVVEAARAANAHE 1111
D+ L +H R+ + QE I+ R V+ L A +++ R A+E
Sbjct: 65 EDISLLPLHARARRGIGYLPQEASIF----RRLSVYDNLMAVLQIRDDLSAEQREDRANE 120
Query: 1112 F-----ISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQS- 1165
I L+D G LSGG+R+R+ IARA+ NP +LLDE + +D S
Sbjct: 121 LMEEFHIEHLRDSM-------GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISV 173
Query: 1166 ---EQVVQEALDRIMMGRTTIVVAHRL-NTIKKLDSIALVADGRVVERGT 1211
+++++ D G ++ H + T+ + +V+ G ++ GT
Sbjct: 174 IDIKRIIEHLRDS---GLGVLITDHNVRETLAVCERAYIVSQGHLIAHGT 220
|
Length = 241 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 2e-13
Identities = 57/241 (23%), Positives = 97/241 (40%), Gaps = 48/241 (19%)
Query: 987 KISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV 1046
S ++ + + L+ S EV G +GL+G++G GKST++ L+ Y
Sbjct: 15 GGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP 74
Query: 1047 EQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNI------RDNIVFG--------- 1091
+ G+V V G V + G R+NI
Sbjct: 75 DSGTVTVRG------RVSS-----------LLGLGGGFNPELTGRENIYLNGRLLGLSRK 117
Query: 1092 KLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTI 1151
++D +E++E S L D + S G + R+A A A P I
Sbjct: 118 EIDEKIDEIIE----------FSELGDFIDLPVKT----YSSGMKARLAFAIATALEPDI 163
Query: 1152 LLLDEATSALDVQSEQVVQEAL-DRIMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVER 1209
LL+DE + D ++ Q L + + G+T I+V+H ++IK+L D ++ G++
Sbjct: 164 LLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFD 223
Query: 1210 G 1210
G
Sbjct: 224 G 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 2e-13
Identities = 41/203 (20%), Positives = 82/203 (40%), Gaps = 44/203 (21%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQ-LKWVR 430
++D + +V+AG+ V + G G+G++ + G + +DG + R +R
Sbjct: 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIR 74
Query: 431 REMGLVS---QEHALFGT-SIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETK 486
+ V + L S+ +NI
Sbjct: 75 AGIAYVPEDRKREGLVLDLSVAENIAL--------------------------------- 101
Query: 487 VGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSES-ETLVQNALDQASLGRTT 545
+LLSGG +Q++ +AR + ++P +L+LDE T +D + + + + A G+
Sbjct: 102 ----SSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAV 157
Query: 546 LVVAHKLSTV-RNADLIAVVDNG 567
L+++ +L + D I V+ G
Sbjct: 158 LLISSELDELLGLCDRILVMYEG 180
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 2e-13
Identities = 55/209 (26%), Positives = 97/209 (46%), Gaps = 32/209 (15%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRR 431
+ + +L V L+G +G+GKST + ++ G + DG R L
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLH---- 70
Query: 432 EMGLVSQEHALFGT-SIKDNI-----MFGKLDATMDEVIAAATAANAHNFIRQLPEGYET 485
++G + + L+ + ++N+ + G D+ +DEV+ I L +
Sbjct: 71 KIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLN----------IVDLTNTGKK 120
Query: 486 KVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALD----SESETLVQNALDQASL 541
K + S G KQR+ IA A++ +P +L+LDE T+ LD E L+++ +Q
Sbjct: 121 KAKQ----FSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ--- 173
Query: 542 GRTTLVVAHKLSTVRN-ADLIAVVDNGCL 569
G T ++ +H LS V+ AD I ++ G L
Sbjct: 174 GITVILSSHILSEVQQLADHIGIISEGVL 202
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 3e-13
Identities = 66/236 (27%), Positives = 115/236 (48%), Gaps = 26/236 (11%)
Query: 992 IEMRRVDFAY-PSRP-DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV--- 1046
I+ VD+ Y P P + L S E++ G+ V LVG +G GKST L+Q F +
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKST---LMQHFNALLKP 59
Query: 1047 EQGSVRVDGMDVR----ELDVHWYRKHTALVSQ--EPVIYAGNIRDNIVFGKLD--ASEN 1098
G++ + G + ++ RK +LV Q E ++ + ++ FG + SE+
Sbjct: 60 SSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSED 119
Query: 1099 EVVEAARAANAHEFISSLKDGYETECGERG-VQLSGGQRQRIAIARAIIRNPTILLLDEA 1157
E E A +++ K G + + +LSGGQ +R+AIA + P IL LDE
Sbjct: 120 EAKEKAL-----KWLK--KVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEP 172
Query: 1158 TSALDVQS-EQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVAD-GRVVERGT 1211
+ LD + ++++Q D G T I+V H ++ + + LV + G++++ +
Sbjct: 173 AAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHAS 228
|
Length = 287 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 3e-13
Identities = 62/217 (28%), Positives = 97/217 (44%), Gaps = 50/217 (23%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK 1068
VL Q + + G V +VG+SGCGKST++ L+ G + + E R+
Sbjct: 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEA-----RE 81
Query: 1069 HTALVSQEP-------VIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYE 1121
T L+ Q+ VI DN+ G ++ A + ++++ G
Sbjct: 82 DTRLMFQDARLLPWKKVI------DNVGLG---------LKGQWRDAALQALAAV--GLA 124
Query: 1122 TECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--- 1178
E LSGGQ+QR+A+ARA+I P +LLLDE ALD AL RI M
Sbjct: 125 DRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALD---------ALTRIEMQDL 175
Query: 1179 --------GRTTIVVAHRLN-TIKKLDSIALVADGRV 1206
G T ++V H ++ + D + L+ +G++
Sbjct: 176 IESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 3e-13
Identities = 68/204 (33%), Positives = 103/204 (50%), Gaps = 20/204 (9%)
Query: 383 GKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRL---QLKWVRREMGLVSQE 439
G++++LVG SGSGKST + R ++ G + +G I L +L+ +RR++ + Q+
Sbjct: 350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQD 409
Query: 440 -------HALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGA 492
G SI + + L + AAA A + LPE E
Sbjct: 410 PYASLDPRQTVGDSIMEPLRVHGL---LPGKAAAARVAWLLERVGLLPEHAWRYPHE--- 463
Query: 493 LLSGGQKQRIAIARAIIKNPVILLLDEATSALD-SESETLVQNALD-QASLGRTTLVVAH 550
SGGQ+QRI IARA+ NP +++ DEA SALD S ++ LD Q G L ++H
Sbjct: 464 -FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISH 522
Query: 551 KLSTV-RNADLIAVVDNGCLVEIG 573
++ V R + +AV+ G +VEIG
Sbjct: 523 DMAVVERISHRVAVMYLGQIVEIG 546
|
Length = 623 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 3e-13
Identities = 60/210 (28%), Positives = 93/210 (44%), Gaps = 16/210 (7%)
Query: 378 LKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVS 437
L G+ + L+G +G+GK+T + + G V++ G + R +G V
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGK-----GWRHIGYVP 55
Query: 438 QEHAL---FGTSIKDNIMFGK--LDATMDEVIAAATAANAHNFIR-QLPEGYETKVGERG 491
Q H F S+ +M G+ + A AA R L E + VGE
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGE-- 113
Query: 492 ALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSES-ETLVQNALDQASLGRTTLVVAH 550
LSGGQ+QR+ +ARA+ P +LLLDE + LD + E L + ++ A G L+ H
Sbjct: 114 --LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTH 171
Query: 551 KLSTVRNADLIAVVDNGCLVEIGTHNDLIN 580
L+ V+ NG ++ GT L +
Sbjct: 172 DLAQAMATCDRVVLLNGRVIADGTPQQLQD 201
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 3e-13
Identities = 56/216 (25%), Positives = 97/216 (44%), Gaps = 16/216 (7%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK 1068
L + S E + G VG +G +G GKST + +I + + GSV+V G DV + R
Sbjct: 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRN 76
Query: 1069 HTALVSQEPVIYAGNIRDNIVF-----GKLDASENEVVEAARAANAHEFISSLKDGYETE 1123
L P+ +R+ + F G + VE G E
Sbjct: 77 IGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIE----------LVGLRPE 126
Query: 1124 CGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTI 1183
++ QLS G RQR+ +A+A+I +P +L+LDE T+ LD ++ + I +T I
Sbjct: 127 QHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTII 186
Query: 1184 VVAHRLNTIKKL-DSIALVADGRVVERGTYAQLTHM 1218
+ H + ++ + D + ++ G++V +L+
Sbjct: 187 LSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 4e-13
Identities = 57/252 (22%), Positives = 104/252 (41%), Gaps = 42/252 (16%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+ + + LKD + ++ G+ V ++G +G+GKST + L+ Y G V
Sbjct: 25 KRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNI-----MFG----KLDATMDEVIA 465
++ G + L E+G + L G ++NI + G ++D +DE+I
Sbjct: 85 KVTG-KVAPLI------ELG-AGFDPELTG---RENIYLRGLILGLTRKEIDEKVDEIIE 133
Query: 466 AATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALD 525
A +FI Q + Y S G R+A + A P ILLLDE + D
Sbjct: 134 ---FAELGDFIDQPVKTY-----------SSGMYARLAFSVATHVEPDILLLDEVLAVGD 179
Query: 526 SESETLVQNALDQ----ASLGRTTLVVAHKLSTVRNA-DLIAVVDNGCLVEIGTHNDLIN 580
+ L++ +T ++V+H L ++ D +++G + G+ ++I
Sbjct: 180 ---AAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236
Query: 581 RIDGHYAKMAKL 592
+ A L
Sbjct: 237 AYEEDLADRLSL 248
|
Length = 249 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 5e-13
Identities = 66/230 (28%), Positives = 106/230 (46%), Gaps = 43/230 (18%)
Query: 374 KDFNLKVKAGKSVALVGASGSGKST----AIALVQRFYDADDGIVRIDGVDIRRL---QL 426
L++ G+++ +VG SG GKST I LV+ A DG V G D+ + +
Sbjct: 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK----ATDGEVAWLGKDLLGMKDDEW 93
Query: 427 KWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEG---- 482
+ VR ++ ++ Q+ L+ M I A + +L
Sbjct: 94 RAVRSDIQMIFQDP------------LASLNPRM--TIGEIIAEPLRTYHPKLSRQEVKD 139
Query: 483 ----YETKVGERGALL-------SGGQKQRIAIARAIIKNPVILLLDEATSALDSESETL 531
KVG L+ SGGQ QRI IARA+I P +++ DE SALD +
Sbjct: 140 RVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQ 199
Query: 532 VQNALD--QASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDL 578
V N L Q +G + + +AH L+ V++ +D + V+ G VE+GT++++
Sbjct: 200 VVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEV 249
|
Length = 331 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 5e-13
Identities = 53/212 (25%), Positives = 98/212 (46%), Gaps = 13/212 (6%)
Query: 1004 RPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLI---QRFYDVEQGSVRVDGMDVRE 1060
A +L S+ V+ G + ++G SG GK+T++ I G + +G
Sbjct: 17 NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQ---P 73
Query: 1061 LDVHWYRKHTALVSQEPVIYAG-NIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDG 1119
++K A V Q+ ++ G +R+ + + + + +A R L+D
Sbjct: 74 RKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVE--DVLLRDL 131
Query: 1120 YETECGERGVQ-LSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM 1178
T G V+ +SGG+R+R++IA ++ +P +L+LDE TS LD + + L ++
Sbjct: 132 ALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR 191
Query: 1179 -GRTTIVVAH--RLNTIKKLDSIALVADGRVV 1207
R I+ H R + + D I L++ G +V
Sbjct: 192 RNRIVILTIHQPRSDLFRLFDRILLLSSGEIV 223
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 5e-13
Identities = 56/225 (24%), Positives = 99/225 (44%), Gaps = 38/225 (16%)
Query: 1011 RQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVH------ 1064
R S ++ PG +G+VG+SG GKST++G + + G+ EL+++
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 1065 ---WYRKHTALVSQEP-------VIYAGNIRDNIV------FGKLDASENEVVEAARAAN 1108
R V Q P V NI + ++ +G + A+
Sbjct: 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAT------------ 127
Query: 1109 AHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQV 1168
A +++ ++ T + SGG +QR+ IAR ++ P ++ +DE T LDV +
Sbjct: 128 AQDWLEEVEID-PTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQAR 186
Query: 1169 VQEALDRIM--MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERG 1210
+ + L ++ +G I+V H L + L + ++ GRVVE G
Sbjct: 187 LLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESG 231
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 5e-13
Identities = 62/221 (28%), Positives = 100/221 (45%), Gaps = 41/221 (18%)
Query: 1013 FSMEVKPGTSVGLVGKSGCGKSTVI----GLIQRFYDVEQGSVRVDGMDVRELDVHWYRK 1068
S EV+ G + LVG +G GKST++ GL+ GS++ G + +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-----PGSGSIQFAGQPLEAWSAAELAR 69
Query: 1069 HTALVSQE--PVIYAGNIRDNIVFGKLDASENE-VVEAARAANAHEFISSLK--DGYETE 1123
H A +SQ+ P VF L + + A A+ +E +L D
Sbjct: 70 HRAYLSQQQTPPFAMP------VFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRS 123
Query: 1124 CGERGVQLSGGQRQRIAIARAIIR-----NP--TILLLDEATSALDVQSEQVVQEALDRI 1176
QLSGG+ QR+ +A +++ NP +LLLDE ++LDV Q ALDR+
Sbjct: 124 VN----QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQ----QAALDRL 175
Query: 1177 M-----MGRTTIVVAHRLN-TIKKLDSIALVADGRVVERGT 1211
+ G ++ +H LN T++ D + L+ G+++ G
Sbjct: 176 LSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGR 216
|
Length = 248 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 5e-13
Identities = 68/275 (24%), Positives = 114/275 (41%), Gaps = 38/275 (13%)
Query: 940 IAEAGSMTSDLAKGSTAVASVFKILDR-------QSLIPGSSQAGDGTRGSKLQKISGKI 992
+ AG + LA + V ++ ++LD + + +G R S L G +
Sbjct: 386 LMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIV 445
Query: 993 E-------MRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD 1045
E + P+ D L+ S EV G ++ + G +GCGKS++ ++ +
Sbjct: 446 EYQDNGIKFENIPLVTPNG-DVLIES-LSFEVPSGNNLLICGPNGCGKSSLFRILGELWP 503
Query: 1046 VEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAAR 1105
V G + + V Q P + G +RD I++ D+SE+
Sbjct: 504 VYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYP--DSSEDMKRRGLS 550
Query: 1106 AANAHEFISSLKDGY--ETECGERGVQ-----LSGGQRQRIAIARAIIRNPTILLLDEAT 1158
+ + + +++ + E E G VQ LSGG++QRIA+AR P +LDE T
Sbjct: 551 DKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECT 610
Query: 1159 SALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIK 1193
SA+ V E + G T V+HR + K
Sbjct: 611 SAVSVDVEGYMYRLCRE--FGITLFSVSHRKSLWK 643
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 5e-13
Identities = 60/217 (27%), Positives = 103/217 (47%), Gaps = 23/217 (10%)
Query: 1006 DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDG--MDVRELDV 1063
D VL+ +++ GLVG +GCGKST+ + ++G+V G +D + +
Sbjct: 13 DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGL 72
Query: 1064 HWYRKHTALVSQEP--VIYAGNIRDNIVFG--KLDASENEVV----EAARAANAHEFISS 1115
R+ A V Q+P I+ +I +I F L E E+ EA +A F
Sbjct: 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQ 132
Query: 1116 LKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDR 1175
+C LS GQ++R+AIA A++ LLLDE T+ LD + + R
Sbjct: 133 -----PIQC------LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRR 181
Query: 1176 IM-MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERG 1210
I+ G I+ +H ++ I ++ D++ ++ G+++ G
Sbjct: 182 IVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHG 218
|
Length = 271 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 6e-13
Identities = 64/283 (22%), Positives = 122/283 (43%), Gaps = 22/283 (7%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+E E V S+ D + + + +V G+ L+G +G+GK+T ++ + +G +
Sbjct: 3 LEIEGVTKSFG---DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEI 59
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALFG-TSIKDNIM-FGKLDATMDEVIAAATAANA 472
+G + + ++ +G + +E L+ +++D + +L M +
Sbjct: 60 TWNGGPLSQE----IKNRIGYLPEERGLYPKMTVEDQLKYLAEL-KGMPKAEIQKKLQAW 114
Query: 473 HNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLV 532
R G +TK + LS G +Q+I A+I P +L+LDE S LD + L+
Sbjct: 115 LE--RLEIVGKKTKKIKE---LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELL 169
Query: 533 QNA-LDQASLGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMA 590
++A + G T + +H++ V D + ++ G V GT D I R G K
Sbjct: 170 KDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVED-IRRSFGK--KRL 226
Query: 591 KLQRQFSCDDQETIPETHVSSVTRSSGGRLSAARSSPA--IFA 631
++ S ++ IP + T+ R+ + A IF
Sbjct: 227 VIESDLSLEELANIPGILKITETKDGSWRIQIENETVAREIFQ 269
|
Length = 300 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 8e-13
Identities = 52/185 (28%), Positives = 89/185 (48%), Gaps = 16/185 (8%)
Query: 367 RPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQL 426
R ++ + + AG+++ L G +GSGK+T + L+ G +++DG DI
Sbjct: 12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDID---D 68
Query: 427 KWVRREMGLVSQEHALFGT-SIKDNIMF-GKLDATMDEVIAAATAANAHNFIRQLPEGYE 484
V + +A+ ++ +N+ F + IAAA A + LP GY
Sbjct: 69 PDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGY- 127
Query: 485 TKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRT 544
LS GQK+R+A+AR ++ N I +LDE T+ALD+ + L + +A L +
Sbjct: 128 ---------LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELI-RAHLAQG 177
Query: 545 TLVVA 549
+V+A
Sbjct: 178 GIVIA 182
|
Length = 207 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 1e-12
Identities = 57/226 (25%), Positives = 103/226 (45%), Gaps = 28/226 (12%)
Query: 369 DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKW 428
+L D +L + GK AL+G +G GKST + R G V + I L +
Sbjct: 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQ 73
Query: 429 VRREMGLVSQEH-ALFGTSIKD---------NIMFGKLDATMDEVIAAATAANAHNFIRQ 478
+ R + L+ Q H G ++++ ++G+L A + + A +
Sbjct: 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQT------R 127
Query: 479 LPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALD----SESETLVQN 534
+ + ++ + LSGGQ+QR +A + ++ ++LLDE T+ LD E L++
Sbjct: 128 INHLADRRLTD----LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRE 183
Query: 535 ALDQASLGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIGTHNDLI 579
Q G+T + V H L+ R D + V+ NG ++ GT +++
Sbjct: 184 LNTQ---GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 1e-12
Identities = 65/292 (22%), Positives = 118/292 (40%), Gaps = 58/292 (19%)
Query: 312 LPELKYFTEASIAA----SRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSR 367
+ + TE +A + R+ + P T G V+ EV S R
Sbjct: 222 VDPVAETTEEELAELMVGREVVLRVVKPPS-----TPGEVVLEVED--------LSVKDR 268
Query: 368 PDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDI------ 421
+KD + +V+AG+ V + G +G+G+S + + G + ++G D+
Sbjct: 269 RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSP 328
Query: 422 ---RRLQLKWV---RREMGLVSQEHALFGTSIKDNIMFGKLDAT---------MDEVIAA 466
RRL L +V R GLV S+ +N++ G+ D +
Sbjct: 329 RERRRLGLAYVPEDRHGHGLVLDL------SLAENLVLGRHDKKPFSRGGFLDRRAIRKF 382
Query: 467 ATAANAHNFIRQLPEGYETKVG---ERGALLSGGQKQRIAIARAIIKNPVILLLDEATSA 523
A R+L E ++ + LSGG +Q++ +AR + + P +L+ + T
Sbjct: 383 A---------RELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRG 433
Query: 524 LDSESETLVQNAL-DQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIG 573
LD + + L + G+ L+++ L + +D IAV+ G +V I
Sbjct: 434 LDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIV 485
|
Length = 501 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 1e-12
Identities = 42/207 (20%), Positives = 83/207 (40%), Gaps = 44/207 (21%)
Query: 1007 ALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVH-W 1065
+R S EV+ G VG+ G G G++ + + G + +DG V
Sbjct: 13 KGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDA 72
Query: 1066 YRKHTALVSQEP----VIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYE 1121
R A V ++ ++ ++ +NI
Sbjct: 73 IRAGIAYVPEDRKREGLVLDLSVAENIALS------------------------------ 102
Query: 1122 TECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRI-MMGR 1180
LSGG +Q++ +AR + R+P +L+LDE T +DV ++ + + + G+
Sbjct: 103 -------SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGK 155
Query: 1181 TTIVVAHRLNTIKKL-DSIALVADGRV 1206
++++ L+ + L D I ++ +GR+
Sbjct: 156 AVLLISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 1e-12
Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 40/186 (21%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKST---AIALVQRFYDADDGIVRIDGVDIRRLQLKWV 429
LKDF+ VK G+ V ++G GSG ST A+A + +G + +G+ + K+
Sbjct: 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY- 81
Query: 430 RREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGE 489
E+ VS+E F T T+ E + A + F+R +
Sbjct: 82 PGEIIYVSEEDVHFPT------------LTVRETLDFALRCKGNEFVRGI---------- 119
Query: 490 RGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVA 549
SGG+++R++IA A++ +L D +T LDS + AL+ RT +A
Sbjct: 120 -----SGGERKRVSIAEALVSRASVLCWDNSTRGLDSST------ALEILKCIRT---MA 165
Query: 550 HKLSTV 555
L T
Sbjct: 166 DVLKTT 171
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 1e-12
Identities = 58/241 (24%), Positives = 111/241 (46%), Gaps = 34/241 (14%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAI----AL-------VQRFYDAD-----DGIVR 415
L + ++++ G+ +A++G +GSGK+T I AL ++ + +
Sbjct: 22 ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81
Query: 416 IDGVDI-------RRL-QLKWVRREMGLVSQ--EHALFGTSIKDNIMFGKLDATMDEVIA 465
+ +++ ++K +RR +G+V Q E+ LF +I+ +I+FG + + + A
Sbjct: 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEA 141
Query: 466 AATAANAHNFIRQLPEGYETKVGERGAL-LSGGQKQRIAIARAIIKNPVILLLDEATSAL 524
AA + L E Y +R LSGGQK+R+A+A + P L+ DE T+ L
Sbjct: 142 KKRAAKYIELV-GLDESYL----QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGL 196
Query: 525 DSESETLVQNALDQASL-GRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIGTHNDLINRI 582
D + + D + G+T ++V H L V +G +++ G D+++
Sbjct: 197 DPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSDN 256
Query: 583 D 583
Sbjct: 257 K 257
|
Length = 305 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (168), Expect = 2e-12
Identities = 62/216 (28%), Positives = 101/216 (46%), Gaps = 7/216 (3%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI-----VRIDGVDIRRLQ- 425
VL ++ A +L+G +GSGK+T + + R D G V + G I +
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 426 LKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYET 485
+ RR +G++ Q F SI DN++ G + A A L + +
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKD 155
Query: 486 KVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTT 545
++ + LSGGQ+Q + +AR + NP +LLLDE TSALD + ++ + + T
Sbjct: 156 RLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTV 215
Query: 546 LVVAHKLS-TVRNADLIAVVDNGCLVEIGTHNDLIN 580
++V H L+ R +D A+ +G LVE G L +
Sbjct: 216 IIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251
|
Length = 276 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 2e-12
Identities = 55/235 (23%), Positives = 96/235 (40%), Gaps = 27/235 (11%)
Query: 374 KDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREM 433
+D + ++ G+ V +GA+G+GKST + ++ G VR++G D R + +++R +
Sbjct: 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRS-I 99
Query: 434 GLVSQEHALFGT--------SIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYET 485
GLV G D++ KL E+ A L E
Sbjct: 100 GLV------MGQKLQLWWDLPALDSLEVLKLIY---EIPDDEFAERLDFLTEIL--DLEG 148
Query: 486 KVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQ--ASLGR 543
+ LS GQ+ R +A A++ P +L LDE T LD ++ ++ L +
Sbjct: 149 FLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQA 208
Query: 544 TTLVVAHKLSTV-RNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQFS 597
T L+ H + D + ++D G LV GT L + + + +
Sbjct: 209 TVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ----FGPYKEFSVELK 259
|
Length = 325 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 2e-12
Identities = 51/217 (23%), Positives = 103/217 (47%), Gaps = 32/217 (14%)
Query: 378 LKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVR-------IDGVDIRRLQLKWVR 430
L+VK G+ +VG SG+GK+T ++ + G V +D +
Sbjct: 305 LEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAK 364
Query: 431 REMGLVSQEHALFG-TSIKDNIM----------FGKLDATMDEVIAAATAANAHNFIRQL 479
R +G++ QE+ L+ ++ DN+ ++ A + + A + +
Sbjct: 365 RYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKY 424
Query: 480 PEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQA 539
P+ LS G++ R+A+A+ +IK P I++LDE T +D ++ V +++ +A
Sbjct: 425 PDE-----------LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKA 473
Query: 540 --SLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIG 573
+ +T ++V+H + V + D A++ +G +V+IG
Sbjct: 474 REEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIG 510
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 53/212 (25%), Positives = 91/212 (42%), Gaps = 34/212 (16%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRR 431
LKD + +V G+ + L+G +G+GKST + L+ Y D G V + G ++ +
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG------RVSSL-L 89
Query: 432 EMGLVSQEHALFGTSIKDNIMF-----GKLDATMDEVIAAATAANAHNFI---RQLPEGY 483
+G + ++NI G +DE I + I +L +
Sbjct: 90 GLGGGFNPEL----TGRENIYLNGRLLGLSRKEIDEKI---------DEIIEFSELGDFI 136
Query: 484 ETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQ-ASLG 542
+ V S G K R+A A A P ILL+DE + D+ + Q L + G
Sbjct: 137 DLPVKT----YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQG 192
Query: 543 RTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIG 573
+T ++V+H S+++ D V++ G + G
Sbjct: 193 KTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 2e-12
Identities = 58/200 (29%), Positives = 91/200 (45%), Gaps = 14/200 (7%)
Query: 1017 VKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELD----VHWYRKHTAL 1072
VK G ++ L+G+SG GKST++ ++ D G V + G + ++D KH
Sbjct: 33 VKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGF 92
Query: 1073 VSQE-PVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQL 1131
V Q +I N +N+ L E+ A + L G QL
Sbjct: 93 VFQSFMLIPTLNALENVELPALLRGESSRQSRNGAK---ALLEQL--GLGKRLDHLPAQL 147
Query: 1132 SGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQE---ALDRIMMGRTTIVVAHR 1188
SGG++QR+A+ARA P +L DE T LD Q+ + + +L+R G T I+V H
Sbjct: 148 SGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNR-EHGTTLILVTHD 206
Query: 1189 LNTIKKLDSIALVADGRVVE 1208
L + D + +G++ E
Sbjct: 207 LQLAARCDRRLRLVNGQLQE 226
|
Length = 228 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 2e-12
Identities = 60/188 (31%), Positives = 95/188 (50%), Gaps = 16/188 (8%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRL---QLKW 428
+L L VK G+++AL+G SGSGKST +A++ D G V + G + ++
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 429 VR-REMGLVSQEHALFGT-SIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETK 486
+R + +G V Q L T + +N+ +L A + + + A + QL G +
Sbjct: 85 LRAKHVGFVFQSFMLIPTLNALENV---ELPALLRGESSRQSRNGAKALLEQL--GLGKR 139
Query: 487 VGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGR--- 543
+ A LSGG++QR+A+ARA P +L DE T LD ++ + + L SL R
Sbjct: 140 LDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLL--FSLNREHG 197
Query: 544 TTLV-VAH 550
TTL+ V H
Sbjct: 198 TTLILVTH 205
|
Length = 228 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 2e-12
Identities = 53/208 (25%), Positives = 103/208 (49%), Gaps = 9/208 (4%)
Query: 1014 SMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALV 1073
S ++ G ++ ++G++G GKST+ ++ + G + ++ + D + K ++
Sbjct: 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMI 92
Query: 1074 SQEPVIYAGNIRDNIVFGK-LDASENEVVEAARAANAHEFISSLKD-GYETECGERGVQ- 1130
Q+P + N R I G+ LD + + +L+ G +
Sbjct: 93 FQDPNT-SLNPRLRI--GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHM 149
Query: 1131 LSGGQRQRIAIARAIIRNPTILLLDEATSALDVQ-SEQVVQEALD-RIMMGRTTIVVAHR 1188
L+ GQ+QR+A+ARA+I P I++ DEA ++LD+ Q++ L+ + G + I V
Sbjct: 150 LAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH 209
Query: 1189 LNTIKKL-DSIALVADGRVVERGTYAQL 1215
+ IK + D + ++ +G VVERG+ A +
Sbjct: 210 IGMIKHISDQVLVMHEGEVVERGSTADV 237
|
Length = 267 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 2e-12
Identities = 120/539 (22%), Positives = 202/539 (37%), Gaps = 65/539 (12%)
Query: 64 HHENFLDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGF 123
H ENFL + F L L ++ + + +R E +L +
Sbjct: 46 HEENFLGQ--GSLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPI-- 101
Query: 124 FDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAF 183
+ D +I ++ D I L PI + A +F +A+ Y S
Sbjct: 102 -EEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALA-IFFFCIAYLAYLSV------- 152
Query: 184 PTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEA 243
+ + I +I G L+ ++ A E A + +F A+ I
Sbjct: 153 -PMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRR 211
Query: 244 ILDSTTKLGIKQGTAKGLAVGSTGLSFAIWAFLAW-YGS-------HLVMFKGETGGKIY 295
+ + + Q +A +A + + A +G +F I
Sbjct: 212 LSFAHGAI---QESANNIA--DLHIIEILIFIAAENFGQLLFFLLIGCALFAAAMFASID 266
Query: 296 AAGIS-FILSGL-------SLGSALPELKYFTEASIAASRIFDRIDRV----PEI---DG 340
AA IS F+L+ L L SALP L +A IA R+ D +R PE+ D
Sbjct: 267 AAAISAFVLALLYIKGPLEMLVSALPIL---AQAQIACQRLADFGERFNEPEPELELSDA 323
Query: 341 EDTKGLVLDEVRGEIEFEHVKFSYPSRPDS--IVLKDFNLKVKAGKSVALVGASGSGKST 398
++ L D+ IE + V + + S L +L++ G V +VG +G GKST
Sbjct: 324 DNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKST 383
Query: 399 AIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDA 458
L Y +G + +DG + R LF D +F L
Sbjct: 384 LAKLFCGLYIPQEGEILLDGAAVSADSRDDYRD----------LFSAIFADFHLFDDLIG 433
Query: 459 TMDEVIAAATAANAHNFIRQLPEGYETKVGERG----ALLSGGQKQRIAIARAIIKNPVI 514
+ A+ NA ++++L + K+ + G LS GQ++R+A+ A +++ I
Sbjct: 434 PDEG--EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPI 491
Query: 515 LLLDEATSALDSESETLVQNAL--DQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVE 571
LL DE + D + L D G+T ++++H AD I + GC+V+
Sbjct: 492 LLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 3e-12
Identities = 47/194 (24%), Positives = 98/194 (50%), Gaps = 19/194 (9%)
Query: 1025 LVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDV----RELDVHWYRKHTALVSQEPVIY 1080
L G SG GK+++I +I ++G + ++G + + + + ++ V Q+ ++
Sbjct: 29 LFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLF 88
Query: 1081 AG-NIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRI 1139
+R N+ +G + + A + ++ L G E LSGG++QR+
Sbjct: 89 PHYTVRGNLRYG---------MWKSMRAQFDQLVALL--GIEHLLDRYPGTLSGGEKQRV 137
Query: 1140 AIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMG-RTTIV-VAHRLNTIKKL-D 1196
AI RA++ P +LL+DE ++LD+ ++ + L+R+ I+ V+H L+ + +L D
Sbjct: 138 AIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLAD 197
Query: 1197 SIALVADGRVVERG 1210
+ ++ +G+V G
Sbjct: 198 RVVVLENGKVKASG 211
|
Length = 352 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 3e-12
Identities = 54/170 (31%), Positives = 87/170 (51%), Gaps = 27/170 (15%)
Query: 371 IVLKDFNLKVKAGKSVALVGASGSGKST-AIALVQRFYDADDGIVRIDGVDI---RRLQL 426
+V+K+ + ++ G+++ LVG SGSGKST +AL++ G + DG + R QL
Sbjct: 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI--NSQGEIWFDGQPLHNLNRRQL 357
Query: 427 KWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAA---------ATAANAHNFIR 477
VR + +V Q+ +S+ + + ++I + A I
Sbjct: 358 LPVRHRIQVVFQDP---NSSLNPRL-------NVLQIIEEGLRVHQPTLSAAQREQQVIA 407
Query: 478 QLPE-GYETKVGER-GALLSGGQKQRIAIARAIIKNPVILLLDEATSALD 525
+ E G + + R A SGGQ+QRIAIARA+I P +++LDE TS+LD
Sbjct: 408 VMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 3e-12
Identities = 56/218 (25%), Positives = 101/218 (46%), Gaps = 32/218 (14%)
Query: 1014 SMEVKPGTSVGLVGKSGCGKST----VIGLIQRF---YDVEQGSVRVDGMDVRELDVHWY 1066
S+EVK G G+VG SG GK+T + G+++ +V G VD
Sbjct: 304 SLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRA 363
Query: 1067 RKHTALVSQEPVIYA-----GNIRDNI------VFGKLDASENEVVEAARAANAHEFISS 1115
+++ ++ QE +Y N+ + I ++ A + A E +
Sbjct: 364 KRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDK 423
Query: 1116 LKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEAL-- 1173
D +LS G+R R+A+A+ +I+ P I++LDE T +D ++ V ++
Sbjct: 424 YPD-----------ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILK 472
Query: 1174 DRIMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERG 1210
R M +T I+V+H ++ + + D AL+ DG++V+ G
Sbjct: 473 AREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIG 510
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 3e-12
Identities = 57/227 (25%), Positives = 100/227 (44%), Gaps = 26/227 (11%)
Query: 1008 LVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYR 1067
+ S+ V + GL+G +G GKST++ +I G + DG W R
Sbjct: 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGH-------PWTR 66
Query: 1068 KHT----ALVSQEPVIYAGNIRDNIVFGKLDASEN-EVVEAARAANAHEFISSLKDGYET 1122
K +L+ + P +Y L A EN +V L T
Sbjct: 67 KDLHKIGSLI-ESPPLY----------ENLTARENLKVHTTLLGLPDSRIDEVLNIVDLT 115
Query: 1123 ECGERGV-QLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRI-MMGR 1180
G++ Q S G +QR+ IA A++ +P +L+LDE T+ LD Q ++E + G
Sbjct: 116 NTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGI 175
Query: 1181 TTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQLTHMRGAFFNLA 1226
T I+ +H L+ +++L D I ++++G + +G + ++ F +
Sbjct: 176 TVILSSHILSEVQQLADHIGIISEGVLGYQGKINKSENLEKLFVEVV 222
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 3e-12
Identities = 72/257 (28%), Positives = 116/257 (45%), Gaps = 48/257 (18%)
Query: 348 LDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFY 407
L ++RG V F+ +R + + +L V GK A++G SG GK+T + L+
Sbjct: 7 LVDMRG------VSFTRGNRC---IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQI 57
Query: 408 DADDGIVRIDGVDI---RRLQLKWVRREMGLVSQEHALF-GTSIKDNIMFGKLDATMDEV 463
D G + DG +I R +L VR+ M ++ Q ALF ++ DN+ + + T
Sbjct: 58 APDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT---- 113
Query: 464 IAAATAANAHNFIRQLPEG--YET------KVGERGAL------LSGGQKQRIAIARAII 509
QLP + T VG RGA LSGG +R A+ARAI
Sbjct: 114 --------------QLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIA 159
Query: 510 KNPVILLLDEATSALDSESETLVQNALDQ--ASLGRTTLVVAHKLSTVRN-ADLIAVVDN 566
P +++ DE D + ++ + + ++LG T +VV+H + V + AD +V +
Sbjct: 160 LEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVAD 219
Query: 567 GCLVEIGTHNDLINRID 583
+V G+ L D
Sbjct: 220 KKIVAHGSAQALQANPD 236
|
Length = 269 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 3e-12
Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 20/207 (9%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAD--DGIVRIDGVDIRRLQLKWVR 430
L + +LKV+AG+ V+L G +G+GKST + ++ Y +G + +G LQ +R
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEG---EELQASNIR 77
Query: 431 --REMGLV--SQEHALF-GTSIKDNIMFGKLDATMDEVIA-AATAANAHNFIRQLPEGY- 483
G+ QE AL S+ +NI G + T ++ A A + QL
Sbjct: 78 DTERAGIAIIHQELALVKELSVLENIFLGN-EITPGGIMDYDAMYLRAQKLLAQLKLDIN 136
Query: 484 -ETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSAL-DSESETLVQNALDQASL 541
T VG L GQ+Q + IA+A+ K +L+LDE T++L +SE+ L+ D +
Sbjct: 137 PATPVGN----LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAH 192
Query: 542 GRTTLVVAHKLSTVRN-ADLIAVVDNG 567
G + ++HKL+ V+ +D I V+ +G
Sbjct: 193 GIACIYISHKLNEVKAISDTICVIRDG 219
|
Length = 506 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 3e-12
Identities = 55/224 (24%), Positives = 105/224 (46%), Gaps = 21/224 (9%)
Query: 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
+E+R V FAY +A + ++ +K G V L+G +G GKST+ L+ Y + G
Sbjct: 322 TLELRNVRFAYQ--DNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGE 379
Query: 1051 VRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAH 1110
+ +DG V + YRK L S +++ D +F +L E + A
Sbjct: 380 ILLDGKPVSAEQLEDYRK---LFS---AVFS----DYHLFDQLLGPEGK----ASPQLIE 425
Query: 1111 EFISSLKDGYETECGERGV---QLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQ 1167
+++ L+ ++T + +LS GQ++R+A+ A++ IL+LDE + D +
Sbjct: 426 KWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRR 485
Query: 1168 VVQEALDRIM--MGRTTIVVAHRLNTIKKLDSIALVADGRVVER 1209
+ L ++ G+T ++H + D + + +G++ E
Sbjct: 486 EFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529
|
Length = 546 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 4e-12
Identities = 66/229 (28%), Positives = 106/229 (46%), Gaps = 29/229 (12%)
Query: 1005 PDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVH 1064
P L S + + G L+G++G GKST++ ++ Y + GS+ +DG ++R
Sbjct: 15 PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMR----- 69
Query: 1065 WYRKHT-ALVSQEPVIYAG-------NIRDNIVFGKLDASENEVVEAARAANAHEFISSL 1116
+ T AL + +IY + +N+ G+L V A E + L
Sbjct: 70 -FASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHL 128
Query: 1117 KDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQ-SEQ---VVQEA 1172
G + + LS GQRQ + IA+A+ RN ++ DE TS+L + EQ V++E
Sbjct: 129 --GVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIREL 186
Query: 1173 LDRIMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTY---AQLTH 1217
GR + V+HR+ I L D+I + DGR V T+ AQ+
Sbjct: 187 RAE---GRVILYVSHRMEEIFALCDAITVFKDGRYVA--TFDDMAQVDR 230
|
Length = 501 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 5e-12
Identities = 55/209 (26%), Positives = 93/209 (44%), Gaps = 24/209 (11%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK 1068
VLR ++E+KPG V +VG+SG GK+T++ +I E+ +
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKN---T 454
Query: 1069 HTALV--SQEPVIYAGNIRDNI--VFGKLDASENEVVEAARAANAHEFISSLKDGYETEC 1124
+AL+ EP I +++ G L+A+ E++ A ++A + +
Sbjct: 455 VSALIPGEYEPEFGEVTILEHLRSKTGDLNAAV-EILNRAGLSDAVLYRRKFSE------ 507
Query: 1125 GERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRI--MMGRTT 1182
LS GQ++R +A+ + P +LL+DE + LD + V + + G T
Sbjct: 508 ------LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITL 561
Query: 1183 IVVAHRLNTIKKL--DSIALVADGRVVER 1209
IVV HR L D++ LV G+V
Sbjct: 562 IVVTHRPEVGNALRPDTLILVGYGKVPVN 590
|
Length = 593 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.9 bits (163), Expect = 7e-12
Identities = 69/235 (29%), Positives = 100/235 (42%), Gaps = 34/235 (14%)
Query: 371 IVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVR 430
V ++ +++ G A++G +G GKST + + R G V +DG I+ K V
Sbjct: 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVA 80
Query: 431 REMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGER 490
R +GL++Q G D T+ E++A + F R E E
Sbjct: 81 RRIGLLAQNATTPG------------DITVQELVARGRYPHQPLFTRWRKEDEEAVTKAM 128
Query: 491 GA------------LLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQ 538
A LSGGQ+QR IA + + I+LLDE T+ LD + + L +
Sbjct: 129 QATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSE 188
Query: 539 ASL--GRTTLVVAHKLS-TVRNAD-LIA-----VVDNGCLVEIGTHNDLINRIDG 584
+ G T V H L+ R A LIA +V G EI T +LI RI G
Sbjct: 189 LNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT-AELIERIYG 242
|
Length = 265 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 8e-12
Identities = 56/220 (25%), Positives = 93/220 (42%), Gaps = 39/220 (17%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVI----GLIQRFYDVEQGSVRVDGMDVRELDVHW 1065
L S EV+ G + LVG +G GKST++ G+ GS++ G +
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-----GSGSIQFAGQPLEAWSATE 69
Query: 1066 YRKHTALVSQE--PVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETE 1123
+H A +SQ+ P V+ L ++ + +
Sbjct: 70 LARHRAYLSQQQTPPFAMP------VWHYLTLH----QPDKTRTELLNDVAGAL-ALDDK 118
Query: 1124 CGERGVQLSGGQRQRIAIARAIIR-----NPT--ILLLDEATSALDVQSEQVVQEALDRI 1176
G QLSGG+ QR+ +A +++ NP +LLLDE ++LDV Q ALDR+
Sbjct: 119 LGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQ----QSALDRL 174
Query: 1177 M-----MGRTTIVVAHRLN-TIKKLDSIALVADGRVVERG 1210
+ G ++ +H LN T++ L+ G+++ G
Sbjct: 175 LSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASG 214
|
Length = 248 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 9e-12
Identities = 65/243 (26%), Positives = 114/243 (46%), Gaps = 26/243 (10%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI---VRIDGVDIRRL----- 424
L +L + G+ VAL+G SGSGKST + + D + + G ++R
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 425 QLKWVRREMGLVSQEHALFGT-SIKDNIMFGKLDAT--MDEVIAAATAANAHNFIRQLPE 481
++ R G + Q+ L S+ +N++ G L +T + T ++ L
Sbjct: 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQAL-- 137
Query: 482 GYETKVG------ERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNA 535
T+VG +R + LSGGQ+QR+AIARA+++ ++L DE ++LD ES +V +
Sbjct: 138 ---TRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDT 194
Query: 536 LDQASL--GRTTLVVAHKLS-TVRNADLIAVVDNGCLVEIGTHNDLIN-RIDGHYAKMAK 591
L + G T +V H++ +R + I + G + G+ N R D Y + +
Sbjct: 195 LRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDNERFDHLYRSINR 254
Query: 592 LQR 594
++
Sbjct: 255 VEE 257
|
Length = 262 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 1e-11
Identities = 62/246 (25%), Positives = 110/246 (44%), Gaps = 35/246 (14%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVI----GLIQRFYDVEQGSVRVD----GMDVRE 1060
L S + ++G SG GKST++ GLI+ Y G+++V G
Sbjct: 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY----GTIQVGDIYIGDKKNN 96
Query: 1061 LDVHWY------------RKHTALVSQEP--VIYAGNIRDNIVFGKLDASENEVVEAARA 1106
++ R+ ++V Q P ++ I +I+FG + + EA +
Sbjct: 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKS-EAKKL 155
Query: 1107 ANAHEFISSLKDGYETECGERG-VQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQS 1165
A + L D Y ER LSGGQ++R+AIA + P IL+ DE T+ LD +
Sbjct: 156 AKFYLNKMGLDDSYL----ERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKG 211
Query: 1166 EQ-VVQEALDRIMMGRTTIVVAHRL-NTIKKLDSIALVADGRVVERGTYAQLTHMRGAFF 1223
E ++Q LD +T V+ H + + ++ D + ++ G++++ GT ++
Sbjct: 212 EHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEI-FTDQHII 270
Query: 1224 NLATLQ 1229
N ++Q
Sbjct: 271 NSTSIQ 276
|
Length = 320 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 1e-11
Identities = 61/213 (28%), Positives = 103/213 (48%), Gaps = 17/213 (7%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVR- 430
VLK + + AG+ AL+G +G+GKST + ++ D G + I G +L +
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGN--PCARLTPAKA 83
Query: 431 REMG--LVSQEHALFGT-SIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKV 487
++G LV QE LF S+K+NI+FG L + + L G + +
Sbjct: 84 HQLGIYLVPQEPLLFPNLSVKENILFG-LPKRQA------SMQKMKQLLAAL--GCQLDL 134
Query: 488 GERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALD-SESETLVQNALDQASLGRTTL 546
L +Q + I R ++++ IL+LDE T++L +E+E L + + G +
Sbjct: 135 DSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIV 194
Query: 547 VVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDL 578
++HKL +R AD I+V+ +G + G DL
Sbjct: 195 FISHKLPEIRQLADRISVMRDGTIALSGKTADL 227
|
Length = 510 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 1e-11
Identities = 57/221 (25%), Positives = 96/221 (43%), Gaps = 16/221 (7%)
Query: 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
+E+R V FAY + ++ +K G + L+G +G GKST+ L+ Y + G
Sbjct: 322 TLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGE 379
Query: 1051 VRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAH 1110
+ +DG V YRK + V D +F +L E + A
Sbjct: 380 ILLDGKPVTAEQPEDYRKLFSAV----------FTDFHLFDQLLGPEGKPANPALVEKWL 429
Query: 1111 EFISSLKDGYETECGE-RGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVV 1169
E + + E E G ++LS GQ++R+A+ A+ ILLLDE + D +
Sbjct: 430 ERL-KMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREF 488
Query: 1170 -QEALDRIM-MGRTTIVVAHRLNTIKKLDSIALVADGRVVE 1208
Q L + MG+T ++H + D + + +G++ E
Sbjct: 489 YQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529
|
Length = 547 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 1e-11
Identities = 63/233 (27%), Positives = 106/233 (45%), Gaps = 34/233 (14%)
Query: 368 PDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAD----DGIVRIDGVDIRR 423
++ +L ++ G+ +ALVG SGSGKS A A G V +DG +
Sbjct: 14 AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP 73
Query: 424 LQLKWVRREMGLVSQE--------HALFGTSIKDNIMFGKL--DATMDEVIAAATAANAH 473
L+ R++ + Q H + + + + GK DAT+ + A NA
Sbjct: 74 CALR--GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAA 131
Query: 474 NFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESET--- 530
++ P +E +SGG QR+ IA A++ ++ DE T+ LD ++
Sbjct: 132 RVLKLYP--FE---------MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARIL 180
Query: 531 -LVQNALDQASLGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIGTHNDLINR 581
L+++ + + +LG L+V H + V R AD +AV+ +G +VE G L N
Sbjct: 181 DLLESIVQKRALG--MLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA 231
|
Length = 254 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 2e-11
Identities = 60/235 (25%), Positives = 106/235 (45%), Gaps = 16/235 (6%)
Query: 989 SGKIEMRRVDFAYPSRP--DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV 1046
S I + V + Y + + L S+ K ++G +G GKST+I L
Sbjct: 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS 63
Query: 1047 EQGSVRVDGMDV-----RELDVHWYRKHTALVSQEP--VIYAGNIRDNIVFGKLDASENE 1099
E G V + + +V RK LV Q P ++ I +I FG ++ EN+
Sbjct: 64 ETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENK 123
Query: 1100 VVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATS 1159
EA + + L + Y +LSGGQ++R+A+A I + L+LDE T
Sbjct: 124 Q-EAYKKVPELLKLVQLPEDY---VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTG 179
Query: 1160 ALDVQSEQVVQEALDRI--MMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGT 1211
LD + E+ +R+ + I+V H ++ + ++ D + ++ +G+V+ G+
Sbjct: 180 GLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234
|
Length = 289 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 2e-11
Identities = 75/233 (32%), Positives = 120/233 (51%), Gaps = 31/233 (13%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
++ + V+ SY + V+K +L V G+ + LVG SG GKST + +V G +
Sbjct: 4 LKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEI 61
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALF-GTSIKDNIMFG----KLD-ATMDEVIAAAT 468
I G + L+ R++ +V Q +AL+ S+++N+ +G + A ++E +A A
Sbjct: 62 WIGGRVVNELEPA--DRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAA 119
Query: 469 AANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSES 528
I +L + K E LSGGQ+QR+A+ RAI++ P + L DE S LD++
Sbjct: 120 R------ILELEPLLDRKPRE----LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAK- 168
Query: 529 ETL-VQNALD----QASLGRTTLVVAH-KLSTVRNADLIAVVDNGCLVE-IGT 574
L VQ L+ L T+L V H ++ + AD + VV NG + E IGT
Sbjct: 169 --LRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRV-VVMNGGVAEQIGT 218
|
Length = 356 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 2e-11
Identities = 63/240 (26%), Positives = 106/240 (44%), Gaps = 45/240 (18%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGM----------DVR 1059
+R S ++ G ++ +VG+SG GKS + R + G V+ D M ++
Sbjct: 32 VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91
Query: 1060 ELDVHWYRK----HTALVSQEPVI-----------YAGNIRDNIVFGKLDA--SENEVVE 1102
E R A++ QEP+ A +IR + + +A +++
Sbjct: 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLD 151
Query: 1103 AARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALD 1162
R A +S QLSGG RQR+ IA A+ P +L+ DE T+ALD
Sbjct: 152 QVRIPEAQTILSRYPH-----------QLSGGMRQRVMIAMALSCRPAVLIADEPTTALD 200
Query: 1163 VQSE-QVVQ--EALDRIM-MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQLTH 1217
V + Q++Q + L + M MG I + H + + ++ D + ++ G VE G+ Q+ H
Sbjct: 201 VTIQAQILQLIKVLQKEMSMG--VIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFH 258
|
Length = 623 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 2e-11
Identities = 56/192 (29%), Positives = 80/192 (41%), Gaps = 47/192 (24%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMD---------VR 1059
VLR S+ V G V L G SG GKST++ + Y ++G + V R
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 1060 E-LDVHWYRKHT-ALVSQ---------------EPVIYAGNIRDNIVFGKLDASENEVVE 1102
E L+V R+ T VSQ EP++ G R+ + + +
Sbjct: 86 EVLEV---RRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPRE--------VARAKAAD 134
Query: 1103 AARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALD 1162
N E + SL SGG++QR+ IAR I + ILLLDE T++LD
Sbjct: 135 LLTRLNLPERLWSLAPA----------TFSGGEQQRVNIARGFIVDYPILLLDEPTASLD 184
Query: 1163 VQSEQVVQEALD 1174
+ VV E +
Sbjct: 185 ATNRAVVVELIR 196
|
Length = 235 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 2e-11
Identities = 51/194 (26%), Positives = 88/194 (45%), Gaps = 34/194 (17%)
Query: 1004 RPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDV 1063
R ++ S + G ++ L G +G GK+T++ LI G++++DG D+ + DV
Sbjct: 12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDV 71
Query: 1064 HWYRKHTALVSQEPVIYAGN---------IRDNIVF--GKLDASENEVVEAARAANAHEF 1112
E Y G+ + +N+ F L E ++ A A
Sbjct: 72 -----------AEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAP- 119
Query: 1113 ISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEA 1172
++ L GY LS GQ++R+A+AR ++ N I +LDE T+ALD + + E
Sbjct: 120 LAHLPFGY----------LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAEL 169
Query: 1173 LDRIMMGRTTIVVA 1186
+ R + + IV+A
Sbjct: 170 I-RAHLAQGGIVIA 182
|
Length = 207 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 3e-11
Identities = 53/228 (23%), Positives = 92/228 (40%), Gaps = 57/228 (25%)
Query: 998 DFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVI----GLIQRFYDVEQGSVRV 1053
R +L+ FS VKPG V ++G+ G G ST++ + VE G +
Sbjct: 11 FTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVE-GDIHY 69
Query: 1054 DGMDVRELDVHWYRKHTALVSQE----PVIYAGNIRDNIVFGKLDASENEVVEAARAANA 1109
+G+ +E Y VS+E P + E ++ A
Sbjct: 70 NGIPYKE-FAEKYPGEIIYVSEEDVHFPTLTVR----------------ETLDFALRCKG 112
Query: 1110 HEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVV 1169
+EF+ RG+ SGG+R+R++IA A++ ++L D +T LD +
Sbjct: 113 NEFV-------------RGI--SGGERKRVSIAEALVSRASVLCWDNSTRGLDSST---- 153
Query: 1170 QEALD-----RIM---MGRTTIVVAHRLN--TIKKLDSIALVADGRVV 1207
AL+ R M + TT V ++ + D + ++ +GR +
Sbjct: 154 --ALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 3e-11
Identities = 59/223 (26%), Positives = 97/223 (43%), Gaps = 34/223 (15%)
Query: 1011 RQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVH------ 1064
R S ++ PG +G+VG+SG GK+T++ I + G+V D + D++
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82
Query: 1065 ---WYRKHTALVSQEP-------VIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFIS 1114
R V Q P V GNI + +L A RA A +++
Sbjct: 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGE-----RLMAIGARHYGNIRAE-AQDWLE 136
Query: 1115 SLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALD 1174
++ + SGG +QR+ IAR ++ P ++ +DE T LDV VQ L
Sbjct: 137 EVEID-LDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVS----VQARLL 191
Query: 1175 RIM------MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERG 1210
++ +G ++V H L + L D + ++ G+VVE G
Sbjct: 192 DLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234
|
Length = 258 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 4e-11
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 4/58 (6%)
Query: 494 LSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLV-VAH 550
LSGG++QR+A AR ++ P + LDEATSALD ESE + L + T++ V H
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELG---ITVISVGH 146
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 4e-11
Identities = 64/226 (28%), Positives = 104/226 (46%), Gaps = 21/226 (9%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
I V AY AL F M +PG L G SG GKST++ LI G +
Sbjct: 2 IRFEHVSKAYLGGRQALQGVTFHM--RPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKI 59
Query: 1052 RVDGMDVREL---DVHWYRKHTALVSQEP-VIYAGNIRDNIVFGKL--DASENEVVEAAR 1105
G D+ L +V + R+ ++ Q+ ++ + DN+ + AS +++
Sbjct: 60 WFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVS 119
Query: 1106 AANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALD-VQ 1164
AA K G + +QLSGG++QR+ IARA++ P +LL DE T LD
Sbjct: 120 AALD-------KVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDAL 172
Query: 1165 SEQVVQ--EALDRIMMGRTTIVVAHRLNTIKKLD-SIALVADGRVV 1207
SE +++ E +R+ G T ++ H + I + + ++DG +
Sbjct: 173 SEGILRLFEEFNRV--GVTVLMATHDIGLISRRSYRMLTLSDGHLH 216
|
Length = 222 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 61.3 bits (150), Expect = 5e-11
Identities = 26/58 (44%), Positives = 42/58 (72%), Gaps = 2/58 (3%)
Query: 1130 QLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAH 1187
QLSGG++ R+A+A+ ++ NP +LLLDE T+ LD++S + ++EAL T I+V+H
Sbjct: 70 QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSH 125
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 5e-11
Identities = 63/213 (29%), Positives = 107/213 (50%), Gaps = 20/213 (9%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAD--DGIVRIDGVDIRRLQLKWVR 430
L +L+V+ G+ V L G +G+GKST + ++ Y DG + G ++ ++
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 431 RE-MGLVSQEHALF-GTSIKDNIMFGKLDATMDEVIA--AATAANAHNFIRQ--LPEGYE 484
R + ++ QE L S+ +NI G + T+ A A N +R+ L
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGN-EITLPGGRMAYNAMYLRAKNLLRELQLDADNV 135
Query: 485 TK-VGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSAL-DSESETLVQNALDQASLG 542
T+ VG+ G GGQ+Q + IA+A+ K +L+LDE +S+L + E+E L+ D + G
Sbjct: 136 TRPVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHG 191
Query: 543 RTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTH 575
+ ++HKL+ V+ AV D C++ G H
Sbjct: 192 VACVYISHKLNEVK-----AVCDTICVIRDGQH 219
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 5e-11
Identities = 57/219 (26%), Positives = 99/219 (45%), Gaps = 36/219 (16%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKH 1069
LR S V G+ LVG +G GKST+ + F + G + + G R+ +K+
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQA----LQKN 78
Query: 1070 -TALVSQE-------PVIYAGNIRDNIVFGKL---------DASENEVVEAARAANAHEF 1112
A V Q PV+ + D ++ G+ + ++V AA A
Sbjct: 79 LVAYVPQSEEVDWSFPVL----VEDVVMMGRYGHMGWLRRAKKRDRQIVTAALAR----- 129
Query: 1113 ISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEA 1172
+ + + GE LSGGQ++R+ +ARAI + ++LLDE + +DV++E +
Sbjct: 130 -VDMVEFRHRQIGE----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISL 184
Query: 1173 LDRIM-MGRTTIVVAHRLNTIKKLDSIALVADGRVVERG 1210
L + G+T +V H L ++ + ++ G V+ G
Sbjct: 185 LRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASG 223
|
Length = 272 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 6e-11
Identities = 53/199 (26%), Positives = 86/199 (43%), Gaps = 35/199 (17%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKST-AIALVQR-FYDADDGIVRIDGVDIRRLQL-KW 428
+LK NL VK G+ A++G +GSGKST A ++ Y+ +G + DG DI L +
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER 78
Query: 429 VRREMGLVSQEHALF-GTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKV 487
R + L Q G + D + A NA R + + ++
Sbjct: 79 ARAGIFLAFQYPVEIPGVTNSDFLR---------------AAMNARRGARGILPEFIKEL 123
Query: 488 GERGALL---------------SGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLV 532
E+ LL SGG+K+R I + ++ P + +LDE S LD ++ +V
Sbjct: 124 KEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIV 183
Query: 533 QNALDQ-ASLGRTTLVVAH 550
++ GR L++ H
Sbjct: 184 AEGINALREEGRGVLIITH 202
|
Length = 251 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 7e-11
Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 30/221 (13%)
Query: 1014 SMEVKPGTSVGLVGKSGCGKS----TVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKH 1069
S+ ++ G + LVG SG GKS +G++ G V +DG V + +
Sbjct: 23 SLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALR--GRK 80
Query: 1070 TALVSQEP--------VIYAGNIRDNIVFGKL--DASENEVVEAARAANAHEFISSLKDG 1119
A + Q P ++ + GK DA+ +EA NA +
Sbjct: 81 IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYP-- 138
Query: 1120 YETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMG 1179
++SGG QR+ IA A++ ++ DE T+ LDV ++ + + L+ I+
Sbjct: 139 ---------FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQK 189
Query: 1180 RT--TIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQLTH 1217
R ++V H + + +L D +A+++ GR+VE+G L +
Sbjct: 190 RALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230
|
Length = 254 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 8e-11
Identities = 63/253 (24%), Positives = 106/253 (41%), Gaps = 46/253 (18%)
Query: 994 MRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFY--DVEQGSV 1051
M D + +R +LR S+ ++PG L+G++G GKST++ +
Sbjct: 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGA 60
Query: 1052 RV------DGMDVRELDVHWYRKHTALVSQ--EPVIYAGNIRDNIVFGK---------LD 1094
RV +G + +D + A++ Q +P +A + R+ ++ G+ L
Sbjct: 61 RVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPA-FAFSAREIVLLGRYPHARRAGALT 119
Query: 1095 ASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAI--------- 1145
+ E+ A A G G LSGG+ R+ AR +
Sbjct: 120 HRDGEIAWQALA----------LAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDA 169
Query: 1146 IRNPTILLLDEATSALDVQSEQVVQEALDRIM----MGRTTIVVAHRLN-TIKKLDSIAL 1200
+ P LLLDE T+ALD+ + + + + R+ +G IV H N + D IA+
Sbjct: 170 AQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIV--HDPNLAARHADRIAM 227
Query: 1201 VADGRVVERGTYA 1213
+ADG +V G A
Sbjct: 228 LADGAIVAHGAPA 240
|
Length = 272 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 9e-11
Identities = 65/227 (28%), Positives = 114/227 (50%), Gaps = 31/227 (13%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKS-TAIALVQRFYDADDGIVRIDGVDIRR-------- 423
+++ + ++ G+++A+VG SGSGKS TA+AL+ R + G+V+ D + +RR
Sbjct: 32 VRNLSFSLQRGETLAIVGESGSGKSVTALALM-RLLEQAGGLVQCDKMLLRRRSRQVIEL 90
Query: 424 -----LQLKWVR-REMGLVSQE-----HALF--GTSIKDNIMFGKLDATMDEVIAAATAA 470
Q++ VR +M ++ QE + +F G I ++I +L A A
Sbjct: 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESI---RLHQGASREEAMVEAK 147
Query: 471 NAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDS--ES 528
+ +R +PE +T + LSGG +QR+ IA A+ P +L+ DE T+ALD ++
Sbjct: 148 RMLDQVR-IPEA-QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQA 205
Query: 529 ETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGT 574
+ L + Q + + + H + V AD + V+ G VE G+
Sbjct: 206 QILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGS 252
|
Length = 623 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 9e-11
Identities = 51/191 (26%), Positives = 85/191 (44%), Gaps = 32/191 (16%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRF--------YDADDGIVRIDGVDIRR 423
VL++ NL++K G VA+VG SG+GK+T + ++ Y D G V + +
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSA 457
Query: 424 LQLKWVRREMGLVS-QEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEG 482
L E G V+ EH + D E++ A ++A + R+ E
Sbjct: 458 LIPGEYEPEFGEVTILEH--LRSKTGD-------LNAAVEILNRAGLSDAVLYRRKFSE- 507
Query: 483 YETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS-- 540
LS GQK+R +A+ + + P +LL+DE + LD + V + + +
Sbjct: 508 -----------LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELARE 556
Query: 541 LGRTTLVVAHK 551
G T +VV H+
Sbjct: 557 AGITLIVVTHR 567
|
Length = 593 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 1e-10
Identities = 58/227 (25%), Positives = 105/227 (46%), Gaps = 19/227 (8%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVI----GLIQRFYDVEQ------GSVRVDGMDVR 1059
L + + G V L+G SG GKST++ GLI +V+ +G R
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 1060 ELDVHWYRKHTALVSQE-PVIYAGNIRDNIVFGKLDAS---ENEVVEAARAANAHEFISS 1115
D+ R +T + Q+ ++ ++ +N++ G L ++ R +
Sbjct: 80 --DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQAL 137
Query: 1116 LKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDR 1175
+ G +R LSGGQ+QR+AIARA+++ ++L DE ++LD +S ++V + L
Sbjct: 138 TRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRD 197
Query: 1176 IMM--GRTTIVVAHRLN-TIKKLDSIALVADGRVVERGTYAQLTHMR 1219
I G T +V H+++ ++ + I + G V G+ Q + R
Sbjct: 198 INQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDNER 244
|
Length = 262 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 1e-10
Identities = 55/208 (26%), Positives = 96/208 (46%), Gaps = 35/208 (16%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+ E+V S+ R VL D +L++K GK + L+G +G+GKST + +V D+G++
Sbjct: 5 VSLENVSVSFGQRR---VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALFGT---SIKDNIMF--GKLDATMDEVIAAATA 469
+ R +L+ +G V Q+ L T ++ + G + + A
Sbjct: 62 K------RNGKLR-----IGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQA 110
Query: 470 ANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESE 529
+ + Q LSGG+ QR+ +ARA++ P +L+LDE T +D +
Sbjct: 111 GHLIDAPMQ--------------KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQ 156
Query: 530 TLVQNALDQ--ASLGRTTLVVAHKLSTV 555
+ + +DQ L L+V+H L V
Sbjct: 157 VALYDLIDQLRRELDCAVLMVSHDLHLV 184
|
Length = 251 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 1e-10
Identities = 56/196 (28%), Positives = 87/196 (44%), Gaps = 42/196 (21%)
Query: 363 SYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKST---AIALVQRFYDADDGIVRIDGV 419
P P +LKD +L G + ++G +G+GKST +A V + ++ + G+
Sbjct: 13 VVP--PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGE--ARPAPGI 68
Query: 420 DIRRL----QL---KWVRR--EMGLVSQEHAL---------FGTSIKDNIMFGKLDATMD 461
+ L QL K VR E G+ + AL F D L A
Sbjct: 69 KVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDAD---MDALLAEQA 125
Query: 462 EVIAAATAANAHNFIRQL---------PEGYETKVGERGALLSGGQKQRIAIARAIIKNP 512
E+ AA+A + R+L P + V LSGG+++R+A+ R ++ P
Sbjct: 126 ELQEIIDAADAWDLDRKLEIAMDALRCPPW-DADV----TKLSGGERRRVALCRLLLSKP 180
Query: 513 VILLLDEATSALDSES 528
+LLLDE T+ LD+ES
Sbjct: 181 DMLLLDEPTNHLDAES 196
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 1e-10
Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 24/218 (11%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW--- 1065
L + S+ + G V L+G +G GK+T++G + G + DG D+ W
Sbjct: 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDI----TDWQTA 75
Query: 1066 --YRKHTALVSQEPVIYAG-NIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYET 1122
R+ A+V + +++ + +N+ G A ++ E R +E L +E
Sbjct: 76 KIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQE--RIKWVYELFPRL---HER 130
Query: 1123 ECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM---- 1178
+R +SGG++Q +AI RA++ P +LLLDE + L + ++Q+ D I
Sbjct: 131 RI-QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL---APIIIQQIFDTIEQLREQ 186
Query: 1179 GRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
G T +V N KL D ++ +G VV T L
Sbjct: 187 GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDAL 224
|
Length = 237 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 56/236 (23%), Positives = 98/236 (41%), Gaps = 24/236 (10%)
Query: 986 QKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD 1045
K G I + + L+ S ++ G VG +G +G GK+T + ++
Sbjct: 14 SKEPGLIGSLK-SLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ 72
Query: 1046 VEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASEN------- 1098
G VRV G+ V W R+ + + V++ + ++ L ++
Sbjct: 73 PTSGEVRVAGL------VPWKRR-KKFLRRIGVVFG---QKTQLWWDLPVIDSFYLLAAI 122
Query: 1099 -EVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEA 1157
++ A E L + R QLS GQR R IA A++ P IL LDE
Sbjct: 123 YDLPPARFKKRLDELSELLDLEELLDTPVR--QLSLGQRMRAEIAAALLHEPEILFLDEP 180
Query: 1158 TSALDVQSEQVVQEALDRIMMGR--TTIVVAHRLNTIKKL-DSIALVADGRVVERG 1210
T LDV +++ ++ L R T ++ +H + I+ L + ++ GR++ G
Sbjct: 181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 2e-10
Identities = 60/247 (24%), Positives = 105/247 (42%), Gaps = 47/247 (19%)
Query: 1006 DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVR------------- 1052
VL+ S ++ G +G++G+SG GKS ++ +++ E S R
Sbjct: 12 GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGY 71
Query: 1053 ------------VDGMDVRELDVHWY----------RKHTALVSQEPVIYAGNIR--DNI 1088
V G + +V ++ RK A++ Q G+ DN+
Sbjct: 72 VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNV 131
Query: 1089 VFGKLDASENEVVEAARAAN-AHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIR 1147
L+A E E A A + I ++ + R LSGG++QR+ +AR + +
Sbjct: 132 ----LEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIAR--DLSGGEKQRVVLARQLAK 185
Query: 1148 NPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKKL-DSIALVADG 1204
P + L DE T LD Q+ ++V AL+ + G + ++ +H I+ L D + +G
Sbjct: 186 EPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENG 245
Query: 1205 RVVERGT 1211
+ E GT
Sbjct: 246 EIKEEGT 252
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 2e-10
Identities = 57/231 (24%), Positives = 100/231 (43%), Gaps = 20/231 (8%)
Query: 986 QKISGKIEMRRVDFAYPS--RPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRF 1043
K IE++ V + + L + + G V +VG++GCGKST+ L
Sbjct: 332 DKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL 391
Query: 1044 YDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEA 1103
Y ++G + +DG V YR +++ D +F L + E
Sbjct: 392 YIPQEGEILLDGAAVSADSRDDYRD----------LFSAIFADFHLFDDLIGPDEG--EH 439
Query: 1104 ARAANAHEFISSLKDGYETECGERG----VQLSGGQRQRIAIARAIIRNPTILLLDEATS 1159
A NA +++ L+ + + + G LS GQ++R+A+ A + + ILL DE +
Sbjct: 440 ASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAA 499
Query: 1160 ALDVQSEQVVQEAL--DRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVE 1208
D ++ E L D G+T I+++H + D I +A G +V+
Sbjct: 500 DQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 2e-10
Identities = 57/222 (25%), Positives = 99/222 (44%), Gaps = 21/222 (9%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+E +V+F+Y ++ + NL +K G+ V L+G +GSGKST L+ Y G +
Sbjct: 323 LELRNVRFAYQ--DNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHN 474
+DG + QL+ R+ LF D +F +L A+
Sbjct: 381 LLDGKPVSAEQLEDYRK----------LFSAVFSDYHLFDQLLGPE----GKASPQLIEK 426
Query: 475 FIRQLPEGYETKVGERGAL---LSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETL 531
++++L ++T + + LS GQK+R+A+ A+++ IL+LDE + D
Sbjct: 427 WLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRRE 486
Query: 532 VQNAL--DQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVE 571
L G+T ++H +AD + + NG L E
Sbjct: 487 FYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 2e-10
Identities = 58/216 (26%), Positives = 94/216 (43%), Gaps = 25/216 (11%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK 1068
V ++E+ G ++G +GCGKST++ + R G V +DG ++ +
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 1069 HTALVSQ----------EPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKD 1118
L++Q + ++ G +F + + E V A A I+ L
Sbjct: 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATG---ITHL-- 136
Query: 1119 GYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRI-- 1176
+ LSGGQRQR IA + + I+LLDE T+ LD+ + + E L +
Sbjct: 137 -----ADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNR 191
Query: 1177 MMGRTTIVVAHRLNTIKKLDS--IALVADGRVVERG 1210
G T V H LN + S IAL +G++V +G
Sbjct: 192 EKGYTLAAVLHDLNQACRYASHLIAL-REGKIVAQG 226
|
Length = 265 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 2e-10
Identities = 58/195 (29%), Positives = 90/195 (46%), Gaps = 24/195 (12%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRRE 432
L+D + V G ALVG +GSGKST + F G + I G R+ L+ +
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ-ALQ--KNL 79
Query: 433 MGLVSQEHAL---FGTSIKDNIMFGK--------LDATMDEVIAAATAANAHNFIRQLPE 481
+ V Q + F ++D +M G+ D I A A + E
Sbjct: 80 VAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARV-----DMVE 134
Query: 482 GYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQ-AS 540
++GE LSGGQK+R+ +ARAI + ++LLDE + +D ++E + + L +
Sbjct: 135 FRHRQIGE----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD 190
Query: 541 LGRTTLVVAHKLSTV 555
G+T LV H L +V
Sbjct: 191 EGKTMLVSTHNLGSV 205
|
Length = 272 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 2e-10
Identities = 55/213 (25%), Positives = 101/213 (47%), Gaps = 18/213 (8%)
Query: 1024 GLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGN 1083
+G +G GK+T + ++ G+V V G D+ E ++ R+ + Q
Sbjct: 960 AFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI-ETNLDAVRQSLGMCPQH------- 1011
Query: 1084 IRDNIVFGKLDASENEVVEAARAANAH-----EFISSLKD-GYETECGERGVQLSGGQRQ 1137
NI+F L +E+ + A + E + L+D G + E LSGG ++
Sbjct: 1012 ---NILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQR 1068
Query: 1138 RIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKL-D 1196
++++A A + + +++LDE TS +D S + + + L + GRT I+ H ++ L D
Sbjct: 1069 KLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGD 1128
Query: 1197 SIALVADGRVVERGTYAQLTHMRGAFFNLATLQ 1229
IA+++ GR+ GT L + G F L ++
Sbjct: 1129 RIAIISQGRLYCSGTPLFLKNCFGTGFYLTLVR 1161
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 60.1 bits (145), Expect = 2e-10
Identities = 34/197 (17%), Positives = 56/197 (28%), Gaps = 58/197 (29%)
Query: 1019 PGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPV 1078
PG + +VG G GK+T+ + R G V + +V +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIV------ 54
Query: 1079 IYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQR 1138
G + SG R R
Sbjct: 55 ----------------------------------------------GGKKASGSGELRLR 68
Query: 1139 IAIARAIIRNPTILLLDEATSALDVQSEQVVQEALD------RIMMGRTTIVVAHRLNTI 1192
+A+A A P +L+LDE TS LD + E ++ + T+++
Sbjct: 69 LALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128
Query: 1193 KKLDSIALVADGRVVER 1209
+ D R+V
Sbjct: 129 LGPALLRRRFDRRIVLL 145
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 3e-10
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 494 LSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLS 553
LSGG++QR+A AR ++ P + LDEATSALD E+E + L + T + V H+
Sbjct: 516 LSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHR-P 574
Query: 554 TVRN--ADLIAVVDNGC 568
T+ N + + ++D+
Sbjct: 575 TLWNFHSRQLELLDDAG 591
|
Length = 604 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 3e-10
Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 29/226 (12%)
Query: 1002 PSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRE- 1060
R ++ S EV+ G VG+ G +G G+S ++ I G + ++G DV
Sbjct: 266 KDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGR 325
Query: 1061 LDVHWYRKH-----------TALVSQEPVIYAGNIRDNIVFGKLD----ASENEVVEAAR 1105
L R+ LV + +N+V G+ D + + A
Sbjct: 326 LSPRERRRLGLAYVPEDRHGHGLVLDLSLA------ENLVLGRHDKKPFSRGGFLDRRAI 379
Query: 1106 AANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQS 1165
A E I D LSGG +Q++ +AR + R P +L+ + T LDV +
Sbjct: 380 RKFARELIEEF-DVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGA 438
Query: 1166 EQVVQEALDRIMM---GRTTIVVAHRLNTIKKL-DSIALVADGRVV 1207
+ + E L + + G+ ++++ L+ I +L D IA++ +GR+V
Sbjct: 439 IEFIHERL--LELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIV 482
|
Length = 501 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 3e-10
Identities = 61/259 (23%), Positives = 115/259 (44%), Gaps = 41/259 (15%)
Query: 991 KIEMRRVDFAYPSR-PDAL-VLRQFSMEVKPGTSVGLVGKSGCGKSTVI----------- 1037
+I+++ + + + P L L S+E+ G + ++G++G GK+T I
Sbjct: 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT 61
Query: 1038 GLIQRFYDVEQGSVRVDGMDVRELD-------------VHWYRKHTALVSQ--EPVIYAG 1082
G I+ + E+ + + + R+ +V Q E ++
Sbjct: 62 GTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ 121
Query: 1083 NIRDNIVFG--KLDASENEVVEAARAANAHEFISSLKDGYETECGERG-VQLSGGQRQRI 1139
I +I+FG + S+ E + A ++I + G + +R +LSGGQ++R+
Sbjct: 122 TIEKDIIFGPVSMGVSKEEAKKRAA-----KYIELV--GLDESYLQRSPFELSGGQKRRV 174
Query: 1140 AIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRI-MMGRTTIVVAHRL-NTIKKLDS 1197
A+A + P L+ DE T+ LD Q + + E D + G+T I+V H L N ++
Sbjct: 175 ALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKR 234
Query: 1198 IALVADGRVVERG-TYAQL 1215
DG++++ G TY L
Sbjct: 235 TIFFKDGKIIKDGDTYDIL 253
|
Length = 305 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 3e-10
Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 32/169 (18%)
Query: 1017 VKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQE 1076
+ PG VGLVGK+GCGKST++ L++ + GS G + W + T + Q
Sbjct: 24 INPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG----NWQLAWVNQETPALPQP 79
Query: 1077 PVIY----------------AGNIRDN-----IVFGKLDASENEVVEAARAANAHEFISS 1115
+ Y N R++ + GKLDA + + +RAA+ +
Sbjct: 80 ALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIR-SRAAS---LLHG 135
Query: 1116 LKDGYETECGERGVQ-LSGGQRQRIAIARAIIRNPTILLLDEATSALDV 1163
L G+ E ER V SGG R R+ +A+A+I +LLLDE T+ LD+
Sbjct: 136 L--GFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDL 182
|
Length = 638 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 5e-10
Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 20/162 (12%)
Query: 373 LKDFNLKVKA---GKSV-ALVGASGSGKSTAIALVQRFYDADDGIVRIDG---VDI-RRL 424
L D L V + + A+ G SG+GK++ I + G + ++G D + +
Sbjct: 10 LGDLCLTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGI 69
Query: 425 QLKWVRREMGLVSQEHALF-GTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGY 483
L +R +G V Q+ LF ++ N+ +G +A + A + L G
Sbjct: 70 CLPPEKRRIGYVFQDARLFPHYKVRGNLRYG---------MAKSMVAQFDKIVALL--GI 118
Query: 484 ETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALD 525
E + LSGG+KQR+AI RA++ P +LL+DE ++LD
Sbjct: 119 EPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 5e-10
Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 29/226 (12%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDG-MDVRELDVHWY-- 1066
L S V PG L+G +G GK+T++ +I ++G V DG D+ +L H
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 1067 ----RKHTALVSQEPVIYAG-NIRDNI---------VFGKLDASENEVVEAARAANAHEF 1112
RK Q+P ++ +R+N+ VF L A E R
Sbjct: 81 AGIGRKF-----QKPTVFENLTVRENLELALNRDKSVFASLFARLRAE-ERRRIDELLAT 134
Query: 1113 ISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEA 1172
I G E LS GQ+Q + I + ++P +LLLDE + + + E
Sbjct: 135 I-----GLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAEL 189
Query: 1173 LDRIMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQLTH 1217
L + + +VV H + ++++ D + ++ +G V+ G+ ++ +
Sbjct: 190 LKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQN 235
|
Length = 249 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 7e-10
Identities = 57/218 (26%), Positives = 94/218 (43%), Gaps = 38/218 (17%)
Query: 358 EHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRID 417
+V F P R +L +L AGK L+G +GSGKST + ++ R +G + +D
Sbjct: 15 RNVSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLD 71
Query: 418 GVDIRRLQLKWVRREMGLVSQE-HALFGTSIKDNIMFGKLD----------ATMDEVIAA 466
+ K R++ + Q+ A G ++++ + G+ A ++V A
Sbjct: 72 AQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEA 131
Query: 467 ATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDS 526
+ +L + LSGG++QR IA + ++ LLLDE TSALD
Sbjct: 132 ISLVGLKPLAHRLVDS-----------LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDI 180
Query: 527 ESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVV 564
+ V L + H+LS R +IAV+
Sbjct: 181 AHQVDV-------------LALVHRLSQERGLTVIAVL 205
|
Length = 265 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 31/239 (12%)
Query: 992 IEMRRVDFAY-PSRP-DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVI----GLIQRFYD 1045
I ++V+ Y P + L ++ + G+ V ++G +G GKST++ GL+Q
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP--- 59
Query: 1046 VEQGSVRVDGMDV-----RELDVHWYRKHTALVSQ--EPVIYAGNIRDNIVFGKLD--AS 1096
G+V + G V + + RK +V Q E ++ + +I FG ++ S
Sbjct: 60 -TSGTVTI-GERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVS 117
Query: 1097 ENEVVEAARAANAHEFISSLKDGYETECGERG-VQLSGGQRQRIAIARAIIRNPTILLLD 1155
E + + AR E I + G E R +LSGGQ +R+AIA + P +L+LD
Sbjct: 118 EEDAKQKAR-----EMIELV--GLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLD 170
Query: 1156 EATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKKL-DSIALVADGRVVERGT 1211
E T+ LD + + + E ++ G TT++V H + + D I ++ G V +GT
Sbjct: 171 EPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGT 229
|
Length = 290 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 56/226 (24%), Positives = 96/226 (42%), Gaps = 40/226 (17%)
Query: 374 KDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQL------- 426
+D + + G+ + +VG SGSGKST + + D G L+L
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 427 --KWVRREMGLVSQEHAL--------FGTSIKDNIM------FGKLDATMDEVIAAATAA 470
+ +R E G V Q + G +I + +M +G + AT
Sbjct: 80 RRRLMRTEWGFVHQ-NPRDGLRMRVSAGANIGERLMAIGARHYGNIRAT----------- 127
Query: 471 NAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESET 530
A +++ ++ E T++ + SGG +QR+ IAR ++ P ++ +DE T LD +
Sbjct: 128 -AQDWLEEV-EIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQA 185
Query: 531 LVQNALDQ--ASLGRTTLVVAHKLSTVR-NADLIAVVDNGCLVEIG 573
+ + L LG ++V H L R A + V+ G +VE G
Sbjct: 186 RLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESG 231
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 1e-09
Identities = 55/203 (27%), Positives = 101/203 (49%), Gaps = 27/203 (13%)
Query: 1019 PGTSVGLVGKSGCGKSTVI----GLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVS 1074
PG + ++G SG GKST++ G IQ + G++ + + + K T V+
Sbjct: 93 PGEILAVLGPSGSGKSTLLNALAGRIQG--NNFTGTILANNRKPTKQIL----KRTGFVT 146
Query: 1075 QEPVIYAG-NIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGE------- 1126
Q+ ++Y +R+ +VF L + + + A IS L T+C
Sbjct: 147 QDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELG---LTKCENTIIGNSF 203
Query: 1127 -RGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSE-QVVQEALDRIMMGRTTIV 1184
RG+ SGG+R+R++IA ++ NP++L+LDE TS LD + ++V G+T +
Sbjct: 204 IRGI--SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVT 261
Query: 1185 VAHRLNT--IKKLDSIALVADGR 1205
H+ ++ + DS+ ++++GR
Sbjct: 262 SMHQPSSRVYQMFDSVLVLSEGR 284
|
Length = 659 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 2e-09
Identities = 49/214 (22%), Positives = 106/214 (49%), Gaps = 14/214 (6%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRR 431
L + + + + G+ V +G +G+GKST + ++ + D G V++ G D+ + + V+R
Sbjct: 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKE-VQR 75
Query: 432 EMGLVSQEHALF-GTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQL---PEGYETKV 487
+G + + + L+ +++ + F A + + I + PE ++ K+
Sbjct: 76 NIGYLPEHNPLYLDMYVREYLQF---IAGIYGMKGQLLKQRVEEMIELVGLRPEQHK-KI 131
Query: 488 GERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLV 547
G+ LS G +QR+ +A+A+I +P +L+LDE T+ LD ++N + +T ++
Sbjct: 132 GQ----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIIL 187
Query: 548 VAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580
H + V D + +++ G +V ++L
Sbjct: 188 STHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 54/234 (23%), Positives = 111/234 (47%), Gaps = 24/234 (10%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRRE 432
+K + ++ G+++A++G +GSGKST ++ + G + I+ + + +
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKR 88
Query: 433 MGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEG------YETK 486
+ ++ Q+ TS+ + G++ +D + T +Q+ E
Sbjct: 89 IRMIFQDPN---TSLNPRLRIGQI---LDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDH 142
Query: 487 VGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQN-ALD-QASLGRT 544
+L+ GQKQR+A+ARA+I P I++ DEA ++LD + + N L+ Q G +
Sbjct: 143 ANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGIS 202
Query: 545 TLVVAHKLSTVRN-ADLIAVVDNGCLVEIG-THN-------DLINR-IDGHYAK 588
+ V + +++ +D + V+ G +VE G T + +L R I+ H+ +
Sbjct: 203 YIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRLIESHFGE 256
|
Length = 267 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 52/204 (25%), Positives = 93/204 (45%), Gaps = 11/204 (5%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRR 431
LK + ++ G+ V +G +G+GK+T + ++ G VR+ G+ + + K++RR
Sbjct: 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRR 95
Query: 432 EMGLV--SQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGE 489
+G+V + + + D+ L A + ++ A L
Sbjct: 96 -IGVVFGQKTQLWWDLPVIDSF---YLLAAIYDLPPARFKKRLDELSELLDLEELLDTPV 151
Query: 490 RGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQ--ASLGRTTLV 547
R LS GQ+ R IA A++ P IL LDE T LD ++ ++N L + G T L+
Sbjct: 152 RQ--LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLL 209
Query: 548 VAHKLSTV-RNADLIAVVDNGCLV 570
+H + + A + V+D G L+
Sbjct: 210 TSHYMKDIEALARRVLVIDKGRLL 233
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 2e-09
Identities = 60/222 (27%), Positives = 103/222 (46%), Gaps = 20/222 (9%)
Query: 360 VKFSYPS-RPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDG 418
VK PS RP + N+ + A +G +G+GK+T ++++ G V + G
Sbjct: 935 VKIFEPSGRP---AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGG 991
Query: 419 VDIRRLQLKWVRREMGLVSQEHALFG-TSIKDNIMF-GKLDATMDEVIAAATAANAHNFI 476
DI L VR+ +G+ Q + LF ++ ++I+F +L E A +
Sbjct: 992 KDIET-NLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLED-- 1048
Query: 477 RQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNAL 536
G K E LSGG ++++++A A + + +++LDE TS +D S + + L
Sbjct: 1049 ----TGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLL 1104
Query: 537 DQASLGRTTLVVAHKLSTVRNADL----IAVVDNGCLVEIGT 574
+ GRT ++ H + ADL IA++ G L GT
Sbjct: 1105 LKYRSGRTIIMSTHHMD---EADLLGDRIAIISQGRLYCSGT 1143
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 16/177 (9%)
Query: 375 DFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434
F L AG+++ + G +G GK+T + ++ D G VR +G + + + R +
Sbjct: 20 SFTLN--AGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEP-HRNIL 76
Query: 435 LVSQEHALFGT-SIKDNIMF-GKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGA 492
+ L S +N+ F + I A AA LP
Sbjct: 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQ--------- 127
Query: 493 LLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVA 549
LS GQ++R+A+AR + + +LDE T+ALD L+ L +A L R +V+
Sbjct: 128 -LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALL-AGLLRAHLARGGIVLL 182
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-09
Identities = 51/191 (26%), Positives = 85/191 (44%), Gaps = 47/191 (24%)
Query: 1013 FSMEVKPGTS-----VGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYR 1067
F +EV+ G +G++G +G GK+T + L+ G ++ D +L V
Sbjct: 355 FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLA-------GVIKPDEGSEEDLKV---- 403
Query: 1068 KHTALVSQEP----VIYAGNIRD---NIVFGKLDAS--ENEVVEAARAANAHEFISSLKD 1118
S +P Y G + D + + +S + E+V+ +L+D
Sbjct: 404 ------SYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPL----------NLED 447
Query: 1119 GYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM 1178
E E LSGG+ QR+AIA A+ R + LLDE ++ LDV+ +V + + R +
Sbjct: 448 LLERPVDE----LSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIE 503
Query: 1179 GR--TTIVVAH 1187
T +VV H
Sbjct: 504 NNEKTALVVDH 514
|
Length = 591 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 33/179 (18%), Positives = 67/179 (37%), Gaps = 34/179 (18%)
Query: 1003 SRPDALVLRQFSMEVKPGTSVGLVGKSGCGKST----VIGLIQRFYDVEQGSVRVDG--- 1055
R + + S + G ++ + G +G GK+T + GL++ + G V G
Sbjct: 11 ERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRP----DAGEVYWQGEPI 66
Query: 1056 ---MDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKL---DASENEVVEAARAANA 1109
+ + + + ++ +N+ F + + + EA
Sbjct: 67 QNVRESYHQALLYLGHQPGIKTELTA------LENLHFWQRFHGSGNAATIWEALAQVGL 120
Query: 1110 HEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQV 1168
+ G QLS GQ++R+A+AR + + +LDE +ALD + +
Sbjct: 121 AGLE-------DLPVG----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVAL 168
|
Length = 209 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 2e-09
Identities = 40/172 (23%), Positives = 73/172 (42%), Gaps = 13/172 (7%)
Query: 1003 SRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELD 1062
R + S + G ++ + G +G GK+T++ ++ G V ++G +
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 1063 VHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYE- 1121
R L + ++ +N+ F D S+ +V EA +G+E
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGL--------NGFED 120
Query: 1122 TECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEAL 1173
QLS GQ++R+A+AR ++ + +LDE T+ALD EA+
Sbjct: 121 RPVA----QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAM 168
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 3e-09
Identities = 60/250 (24%), Positives = 114/250 (45%), Gaps = 40/250 (16%)
Query: 986 QKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD 1045
Q ++ ++MR V F +R + + S+ V G ++G SG GK+T++ LI
Sbjct: 2 QSVANLVDMRGVSF---TRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA 58
Query: 1046 VEQGSVRVDGMDVRELD---VHWYRKHTALVSQEPVIYAG-NIRDNIVF----------G 1091
+ G + DG ++ + ++ RK +++ Q ++ N+ DN+ +
Sbjct: 59 PDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAP 118
Query: 1092 KLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTI 1151
L ++ +EA A + + S +LSGG +R A+ARAI P +
Sbjct: 119 LLHSTVMMKLEAVGLRGAAKLMPS--------------ELSGGMARRAALARAIALEPDL 164
Query: 1152 LLLDEATSALDVQSEQVVQEALDRI--MMGRTTIVVAHRLNTIKKLDSIA----LVADGR 1205
++ DE D + V+ + + + +G T +VV+H + ++ SIA +VAD +
Sbjct: 165 IMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSH---DVPEVLSIADHAYIVADKK 221
Query: 1206 VVERGTYAQL 1215
+V G+ L
Sbjct: 222 IVAHGSAQAL 231
|
Length = 269 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 3e-09
Identities = 58/206 (28%), Positives = 90/206 (43%), Gaps = 34/206 (16%)
Query: 994 MRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVI----GLIQRFYDVEQG 1049
M RV P P +L+ S+ PG +G++G +G GKST++ G+ + F G
Sbjct: 7 MNRVSKVVP--PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF----NG 60
Query: 1050 SVRV-DGM---------------DVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKL 1093
R G+ VRE + + + I A + L
Sbjct: 61 EARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDAL 120
Query: 1094 DASENEVVEAARAANAHEFISSLK---DGYETECGERGVQ-LSGGQRQRIAIARAIIRNP 1149
A + E+ E AA+A + L+ D + V LSGG+R+R+A+ R ++ P
Sbjct: 121 LAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKP 180
Query: 1150 TILLLDEATSALDVQS----EQVVQE 1171
+LLLDE T+ LD +S EQ +QE
Sbjct: 181 DMLLLDEPTNHLDAESVAWLEQHLQE 206
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 3e-09
Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 8/155 (5%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRR 431
L + +L + G+ V L+GA+G+GK+T + + A G + DG DI Q + R
Sbjct: 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79
Query: 432 E-MGLVSQEHALFG-TSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGE 489
E + +V + +F ++++N+ G A D+ P +E ++ +
Sbjct: 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQF-----QERIKWVYELFPRLHERRI-Q 133
Query: 490 RGALLSGGQKQRIAIARAIIKNPVILLLDEATSAL 524
R +SGG++Q +AI RA++ P +LLLDE + L
Sbjct: 134 RAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL 168
|
Length = 237 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 3e-09
Identities = 61/225 (27%), Positives = 106/225 (47%), Gaps = 42/225 (18%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
++M +V Y R ++L + + PG+ +GL+G++G GKST+I L+ G +
Sbjct: 313 LKMEKVSAGYGDR---IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI 369
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHE 1111
+ + + + ++ +H + F L A E+ + AR A E
Sbjct: 370 GL----AKGIKLGYFAQH-----------------QLEF--LRADESPLQHLARLA-PQE 405
Query: 1112 FISSLKD-----GYE----TECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALD 1162
L+D G++ TE R SGG++ R+ +A + + P +LLLDE T+ LD
Sbjct: 406 LEQKLRDYLGGFGFQGDKVTEETRR---FSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462
Query: 1163 VQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRV 1206
+ Q + EAL I +VV+H + ++ D + LV DG+V
Sbjct: 463 LDMRQALTEAL--IDFEGALVVVSHDRHLLRSTTDDLYLVHDGKV 505
|
Length = 638 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 3e-09
Identities = 63/268 (23%), Positives = 125/268 (46%), Gaps = 31/268 (11%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRR- 431
LK NL V G+ AL+G +G+GKST + ++ ++ G + I+ ++ +L K +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80
Query: 432 EMGLVSQEHALFGT-SIKDNIMFGKLDATMDEVIAAATAANA--HNFIRQLPEGYETKVG 488
+G++ QE ++ ++ +N+ G+ + N +R +VG
Sbjct: 81 GIGIIYQELSVIDELTVLENLYIGRH------LTKKVCGVNIIDWREMRVRAAMMLLRVG 134
Query: 489 ------ERGALLSGGQKQRIAIARAIIKNPVILLLDEATSAL-DSESETL--VQNALDQA 539
E+ A LS KQ + IA+ ++ + ++++DE TS+L + E + L + N L +
Sbjct: 135 LKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE 194
Query: 540 SLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIG-----THNDLINRIDGH--YAKMAK 591
G + ++HKL+ +R D V+ +G V G +++D++ + G +
Sbjct: 195 --GTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDDIVRLMVGRELQNRFNA 252
Query: 592 LQRQFSCDDQETIPETHVSSVTRSSGGR 619
++ S ET+ E V +VT +
Sbjct: 253 MKENVSNLAHETVFE--VRNVTSRDRKK 278
|
Length = 510 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-09
Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 30/221 (13%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRRE 432
L D + +AG+ AL+G +G+GKST + ++ Y D G + IDG + ++
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDG---QEMRFASTTAA 76
Query: 433 MG----LVSQE-HALFGTSIKDNIMFGKLDATM---DEVIAAATAANAHNFIRQLPE--- 481
+ ++ QE H + ++ +N+ G+L + + A QL
Sbjct: 77 LAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAR------EQLEHLGV 130
Query: 482 --GYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDS-ESETLVQNALDQ 538
+T + LS GQ+Q + IA+A+ +N ++ DE TS+L + E E L + +
Sbjct: 131 DIDPDTPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIREL 186
Query: 539 ASLGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIGTHNDL 578
+ GR L V+H++ + D I V +G V T +D+
Sbjct: 187 RAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA--TFDDM 225
|
Length = 501 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 4e-09
Identities = 61/226 (26%), Positives = 104/226 (46%), Gaps = 19/226 (8%)
Query: 1003 SRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLI--QRFYDVEQGSVRVDGMDVRE 1060
S D +LR ++EV+PG ++G +G GKST+ + + Y+V G+V G D+ E
Sbjct: 10 SVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLE 69
Query: 1061 LDVHWYRKHTALVS-QEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEF------- 1112
L ++ Q PV G N F L + N V F
Sbjct: 70 LSPEDRAGEGIFMAFQYPVEIPG--VSNQFF--LQTALNAVRSYRGQEPLDRFDFQDLME 125
Query: 1113 --ISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQ 1170
I+ LK + V SGG+++R I + + P + +LDE+ S LD+ + ++V
Sbjct: 126 EKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVA 185
Query: 1171 EALDRIMMG-RTTIVVAH--RLNTIKKLDSIALVADGRVVERGTYA 1213
+ ++ + G R+ I+V H R+ K D + ++ GR+V+ G +
Sbjct: 186 DGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 231
|
Length = 248 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 6e-09
Identities = 58/279 (20%), Positives = 113/279 (40%), Gaps = 41/279 (14%)
Query: 318 FTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFN 377
+E + + ++ + E+ G + EVR S ++D +
Sbjct: 233 TSEDELVRLMVGRELEDLFPEPPEEGIGEPVLEVRNL-----------SGGG--KVRDVS 279
Query: 378 LKVKAGKSVALVGASGSGKS---TAIALVQRFYDADDGIVRIDGVDIRRLQ-LKWVRREM 433
V+AG+ + + G G+G++ A+ + A G + +DG +R ++ +
Sbjct: 280 FTVRAGEILGIAGLVGAGRTELARALFGARP---ASSGEILLDGKPVRIRSPRDAIKAGI 336
Query: 434 GLVS---QEHALFGT-SIKDNIMFGKLDATMDE--VIAAATAANAHNFIRQL---PEGYE 484
V + L SI +NI L + A A +IR+L E
Sbjct: 337 AYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPE 396
Query: 485 TKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALD----SESETLVQNALDQAS 540
+G LSGG +Q++ +AR + +P +L+LDE T +D +E L++ +
Sbjct: 397 QPIGT----LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-- 450
Query: 541 LGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIGTHNDL 578
G+ L+++ +L + +D I V+ G +V +
Sbjct: 451 -GKAILMISSELPELLGLSDRILVMREGRIVGELDREEA 488
|
Length = 500 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 6e-09
Identities = 42/192 (21%), Positives = 63/192 (32%), Gaps = 61/192 (31%)
Query: 383 GKSVALVGASGSGKSTAIALVQRFYDADD-GIVRIDGVDIRRLQLKWVRREMGLVSQEHA 441
G+ + +VG GSGK+T + R G++ IDG DI L +
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL----------- 50
Query: 442 LFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQR 501
VG + A SG + R
Sbjct: 51 ------------------------------------------LIIVGGKKASGSGELRLR 68
Query: 502 IAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASL-------GRTTLVVAHKLST 554
+A+A A P +L+LDE TS LD+E E L+ + L T ++ +
Sbjct: 69 LALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128
Query: 555 VRNADLIAVVDN 566
+ A L D
Sbjct: 129 LGPALLRRRFDR 140
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 7e-09
Identities = 25/57 (43%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 494 LSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAH 550
LSGG+K R+A+A+ +++NP +LLLDE T+ LD ES ++ AL T ++V+H
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEAL--KEYPGTVILVSH 125
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 7e-09
Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 27/189 (14%)
Query: 366 SRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQ 425
R + + D + + AG+++ + G +G+GK+T + ++ D G V G I+
Sbjct: 11 ERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQN-V 69
Query: 426 LKWVRREMGLVSQEHALFGT-SIKDNIMFGKL---DATMDEVIAAATAANAHNFIRQLPE 481
+ + + + + + + +N+ F + + A LP
Sbjct: 70 RESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLE-DLPV 128
Query: 482 GYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASL 541
G LS GQ++R+A+AR + + +LDE +ALD E L+
Sbjct: 129 GQ----------LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALL--------- 169
Query: 542 GRTTLVVAH 550
T L+ AH
Sbjct: 170 --TALMAAH 176
|
Length = 209 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 7e-09
Identities = 54/229 (23%), Positives = 95/229 (41%), Gaps = 36/229 (15%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWY--- 1066
L S+ V PG ++G +G GK+T++ +I ++GSV G D+ L H
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77
Query: 1067 ---RKHTALVSQEPVIYAG-NIRDN-------------IVFGKLDASENEVVEAARAANA 1109
RK Q+P ++ + +N +F +L A E + +E
Sbjct: 78 GIGRKF-----QKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVL---- 128
Query: 1110 HEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVV 1169
E I G E LS GQ+Q + I ++++P +LLLDE + + + +
Sbjct: 129 -ETI-----GLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKT 182
Query: 1170 QEALDRIMMGRTTIVVAHRLNTIKKLDSIALV-ADGRVVERGTYAQLTH 1217
E L + + +VV H + ++ + V G V+ G+ Q+
Sbjct: 183 AELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 9e-09
Identities = 49/190 (25%), Positives = 75/190 (39%), Gaps = 48/190 (25%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAI-ALVQRFYDADDGIVR----IDGVDIRRLQLK 427
L + + VK G AL+G SG+GK+T + L R G++ I+G R K
Sbjct: 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGR---KTAGVITGEILING----RPLDK 75
Query: 428 WVRREMGLVSQEHALFGTS-IKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETK 486
+R G V Q+ +++ + F +A
Sbjct: 76 NFQRSTGYVEQQDVHSPNLTVREALRF--------------SALL--------------- 106
Query: 487 VGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQ-ASLGRTT 545
RG LS Q++R+ I + P IL LDE TS LDS++ + L + A G+
Sbjct: 107 ---RG--LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAI 161
Query: 546 LVVAHKLSTV 555
L H+ S
Sbjct: 162 LCTIHQPSAS 171
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 9e-09
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 1129 VQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVA 1186
+ LSGG+ QR+AIA A++RN T L DE ++ LD++ A+ R+ +T +VV
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129
Query: 1187 HRLNTIKKLDSIALVADGRVVERGTYAQ 1214
H L + L V +G G +Q
Sbjct: 130 HDLAVLDYLSDRIHVFEGEPGVYGIASQ 157
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 1e-08
Identities = 57/237 (24%), Positives = 95/237 (40%), Gaps = 45/237 (18%)
Query: 1014 SMEVKPGTSVGLVGKSGCGKS----TVIGLIQRFYDVEQGSVRVDGMDVRELDVHW---- 1065
S V+ G +G+ G G G++ + G G + +DG VR
Sbjct: 279 SFTVRAGEILGIAGLVGAGRTELARALFGARPA----SSGEILLDGKPVRIRSPRDAIKA 334
Query: 1066 ---Y----RKHTALVSQEPVIYAGNIRDNIVFGKLDASENE--VVEAARAANAHEFISSL 1116
Y RK LV I +NI L + A A +I L
Sbjct: 335 GIAYVPEDRKSEGLVLDMS------IAENITLASLRRFSRRGLIDRRKERALAERYIRRL 388
Query: 1117 K---DGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDV--QSE--QVV 1169
+ E G LSGG +Q++ +AR + +P +L+LDE T +DV ++E +++
Sbjct: 389 RIKTPSPEQPIGT----LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLI 444
Query: 1170 QEALDRIMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQLTH---MRGAF 1222
+E G+ ++++ L + L D I ++ +GR+V + T M AF
Sbjct: 445 RELAAE---GKAILMISSELPELLGLSDRILVMREGRIVGELDREEATEEAIMAAAF 498
|
Length = 500 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 1e-08
Identities = 52/206 (25%), Positives = 103/206 (50%), Gaps = 10/206 (4%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFY--DVEQGSVRVDGMDVRELDVH-WY 1066
L +EV+PG VGL G++G GKST++ ++ Y G + G ++ ++
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 1067 RKHTALVSQEPVIYAG-NIRDNIVFG-KLDASENEVVEAARAANAHEFISSLKDGYETEC 1124
R ++ QE + ++ +NI G ++ + A A + L+ + +
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQ--LDADN 134
Query: 1125 GERGV-QLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEAL-DRIMMGRTT 1182
R V GGQ+Q + IA+A+ + +L+LDE +S+L + +++ + + D G
Sbjct: 135 VTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVAC 194
Query: 1183 IVVAHRLNTIKKL-DSIALVADGRVV 1207
+ ++H+LN +K + D+I ++ DG+ V
Sbjct: 195 VYISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 1e-08
Identities = 54/184 (29%), Positives = 93/184 (50%), Gaps = 21/184 (11%)
Query: 383 GKSVALVGASGSGKSTAI-ALVQRFYDAD-DGIVRIDGVDIRRLQLKWVRREMGLVSQEH 440
G+ +A++G SGSGKST + AL R + G + + R K + + G V+Q+
Sbjct: 94 GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANN----RKPTKQILKRTGFVTQDD 149
Query: 441 ALF-GTSIKDNIMFGKL-----DATMDEVIAAATAANAHNFIRQLPEGYETKVGE---RG 491
L+ ++++ ++F L T E I A + + L + T +G RG
Sbjct: 150 ILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISE---LGLTKCENTIIGNSFIRG 206
Query: 492 ALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESE-TLVQNALDQASLGRTTLVVAH 550
+SGG+++R++IA ++ NP +L+LDE TS LD+ + LV A G+T + H
Sbjct: 207 --ISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMH 264
Query: 551 KLST 554
+ S+
Sbjct: 265 QPSS 268
|
Length = 659 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 1e-08
Identities = 53/224 (23%), Positives = 89/224 (39%), Gaps = 57/224 (25%)
Query: 354 EIEFE----------HVKFSYPSRPDSIVLKDFNLKVKAGKS-----VALVGASGSGKST 398
EIEFE YP DF L+V+ G+ + ++G +G GK+T
Sbjct: 325 EIEFEEKPPRDDKARDTLVEYPDL--KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTT 382
Query: 399 AIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDA 458
+ L+ D+G D++ S K + D
Sbjct: 383 FVKLLAGVIKPDEG----SEEDLK----------------------VSYKPQYISPDYDG 416
Query: 459 TMDEVIAAATAANAH-NFIR-------QLPEGYETKVGERGALLSGGQKQRIAIARAIIK 510
T+++++ +A + ++ + L + E V E LSGG+ QR+AIA A+ +
Sbjct: 417 TVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDE----LSGGELQRVAIAAALSR 472
Query: 511 NPVILLLDEATSALDSESETLVQNALDQASLGR--TTLVVAHKL 552
+ LLDE ++ LD E +V + + T LVV H +
Sbjct: 473 EADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI 516
|
Length = 591 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 1e-08
Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 42/192 (21%)
Query: 368 PDSIVLKDFNLKVKAGKSVALVGASGSGKSTA---IALVQRFYDADDGIVRI-DGVDIRR 423
P +LKD +L G + ++G +G+GKST +A V + ++ G R G+ +
Sbjct: 18 PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFE---GEARPAPGIKVGY 74
Query: 424 L----QL---KWVRR--EMGLVSQEHAL---------FGTSIKDNIMFGKLDATMDEVIA 465
L QL K VR E G+ + AL + D F L A E+
Sbjct: 75 LPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDAD---FDALAAEQGELQE 131
Query: 466 AATAANAHNFIRQL---------PEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILL 516
AA+A + QL P + KV + LSGG+++R+A+ R +++ P +LL
Sbjct: 132 IIDAADAWDLDSQLEIAMDALRCPPW-DAKVTK----LSGGERRRVALCRLLLEKPDMLL 186
Query: 517 LDEATSALDSES 528
LDE T+ LD+ES
Sbjct: 187 LDEPTNHLDAES 198
|
Length = 556 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 1e-08
Identities = 56/210 (26%), Positives = 101/210 (48%), Gaps = 43/210 (20%)
Query: 975 QAGDGTRGSKLQKISGKI--EMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCG 1032
Q + +R SGKI EM V++ +++ FS +V+ G + L+G +GCG
Sbjct: 308 QVEEASR-------SGKIVFEMENVNYQID---GKQLVKDFSAQVQRGDKIALIGPNGCG 357
Query: 1033 KSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGK 1092
K+T++ L+ + G + +L+V ++ +H A + E + DN+ GK
Sbjct: 358 KTTLLKLMLGQLQADSGRIHCG----TKLEVAYFDQHRAELDPEK-----TVMDNLAEGK 408
Query: 1093 LDASENEVVEAARAANA----HEFISSLKDGYETECGERGVQ----LSGGQRQRIAIARA 1144
EV+ R + +F+ K R + LSGG+R R+ +AR
Sbjct: 409 -----QEVMVNGRPRHVLGYLQDFLFHPK---------RAMTPVKALSGGERNRLLLARL 454
Query: 1145 IIRNPTILLLDEATSALDVQSEQVVQEALD 1174
++ +L+LDE T+ LDV++ ++++E LD
Sbjct: 455 FLKPSNLLILDEPTNDLDVETLELLEELLD 484
|
Length = 635 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 37/224 (16%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDG-VDIRRL-QLKWVR 430
L D + V G+ L+G +G+GK+T + ++ +G V DG D+ +L + + R
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 431 REMGLVSQEHALF-GTSIKDNIM-------------FGKLDAT----MDEVIAAATAANA 472
+G Q+ +F ++++N+ F +L A +DE++A
Sbjct: 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLA------- 133
Query: 473 HNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSAL-DSESETL 531
I E ALLS GQKQ + I + ++P +LLLDE + + D+E+E
Sbjct: 134 --TIGLGDERDRL-----AALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKT 186
Query: 532 VQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGT 574
+ A + LVV H + VR AD + V+ G ++ G+
Sbjct: 187 AELLKSLAG-KHSILVVEHDMGFVREIADKVTVLHEGSVLAEGS 229
|
Length = 249 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 2e-08
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 17/175 (9%)
Query: 997 VDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGM 1056
+DF Y D +L+Q S + G + L G +G GK+T++ LI + E+G + +
Sbjct: 7 LDFDYH---DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQ 63
Query: 1057 DVRELDVHWYRKHTALVSQEPVIYAG-NIRDNIVFGKLDASEN-EVVEAARAANAHEFIS 1114
+++ D+ Y+K V I +R+N ++ + + E R +
Sbjct: 64 SIKK-DLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCR-------LF 115
Query: 1115 SLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVV 1169
SL+ + CG LS GQ++++A+ R + + LLDE ALD S +
Sbjct: 116 SLEHLIDYPCG----LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTI 166
|
Length = 200 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 3e-08
Identities = 57/245 (23%), Positives = 100/245 (40%), Gaps = 52/245 (21%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKST-AIALVQRF-YDADDGIVRIDGVDIRRLQLKWV 429
+LK NL VK G+ A++G +GSGKST + + Y+ G + G D+ L+L+
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDL--LELE-- 70
Query: 430 RREMGLVSQEHALFGTSIKDNIMFGKLDA-------TMDEVIAAATAANAHNFIRQLPE- 481
E A G +F + E + +A NA R
Sbjct: 71 -------PDERARAG-------LFLAFQYPEEIPGVSNLEFL--RSALNARRSARGEEPL 114
Query: 482 ---GYETKVGERGALL---------------SGGQKQRIAIARAIIKNPVILLLDEATSA 523
+ + + ALL SGG+K+R I + + P + +LDE S
Sbjct: 115 DLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSG 174
Query: 524 LDSESETLVQNALDQ-ASLGRTTLVVAH--KLSTVRNADLIAVVDNGCLVEIGTHNDLIN 580
LD ++ +V +++ R+ L++ H +L D + V+ +G +V+ G +L
Sbjct: 175 LDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDV-ELAK 233
Query: 581 RIDGH 585
++
Sbjct: 234 ELEEK 238
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 3e-08
Identities = 56/172 (32%), Positives = 74/172 (43%), Gaps = 21/172 (12%)
Query: 369 DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDG--VDIRRLQL 426
D VLK NL LVGA+G GKST + G V G +D + L
Sbjct: 13 DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGL 72
Query: 427 KWVRREMGLVSQ--EHALFGTSIKDNIMFG--KLDATMDEVI----AAATAANAHNFIRQ 478
+R+++ V Q E +F T I +I F L E+ A T +A +F R
Sbjct: 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHF-RH 131
Query: 479 LPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESET 530
P LS GQK+R+AIA A++ LLLDE T+ LD T
Sbjct: 132 QPI----------QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRT 173
|
Length = 271 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 3e-08
Identities = 41/185 (22%), Positives = 78/185 (42%), Gaps = 14/185 (7%)
Query: 366 SRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQ 425
R + + + AG+++ + G +GSGK+T + ++ G V ++G + +
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 426 LKWVRREMGLVSQEHALFGT-SIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYE 484
R + + + T S+ +N+ F D + ++V A + F P
Sbjct: 69 DSI-ARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGF-EDRPVAQ- 125
Query: 485 TKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRT 544
LS GQ++R+A+AR ++ + +LDE T+ALD A+ R
Sbjct: 126 ---------LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAM-AGHCARG 175
Query: 545 TLVVA 549
+VV
Sbjct: 176 GMVVL 180
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 4e-08
Identities = 50/192 (26%), Positives = 79/192 (41%), Gaps = 40/192 (20%)
Query: 1017 VKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQE 1076
VKPGT L+G+SG GK+T+ LDV RK +++
Sbjct: 30 VKPGTLTALMGESGAGKTTL------------------------LDVLAGRKTAGVIT-- 63
Query: 1077 PVIYAGNIRDNIVFGK-LDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQ 1135
G I N G+ LD + + H ++++ RG LS Q
Sbjct: 64 -----GEILIN---GRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRG--LSVEQ 113
Query: 1136 RQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM-GRTTIVVAHRLN--TI 1192
R+R+ I + P+IL LDE TS LD Q+ + L ++ G+ + H+ +
Sbjct: 114 RKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIF 173
Query: 1193 KKLDSIALVADG 1204
+K D + L+ G
Sbjct: 174 EKFDRLLLLKRG 185
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 4e-08
Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 32/185 (17%)
Query: 1014 SMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALV 1073
++EV+ V L+G +G GK+TV + FY G++ + G + L H +
Sbjct: 25 NLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGH-------QI 77
Query: 1074 SQEPVIYA-GNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKD-GY---ETECGERG 1128
++ V+ ++R +F ++ EN +V + F LK + E+E +R
Sbjct: 78 ARMGVVRTFQHVR---LFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRA 134
Query: 1129 VQ-----------------LSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQE 1171
L+ GQ++R+ IAR ++ P IL+LDE + L+ + + + E
Sbjct: 135 ATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDE 194
Query: 1172 ALDRI 1176
+ +
Sbjct: 195 LIAEL 199
|
Length = 255 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 5e-08
Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 21/169 (12%)
Query: 1003 SRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELD 1062
SR + ++ S + G ++ + G +G GK+T++ ++ + G VR +G + E
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 1063 VHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYET 1122
++Y G++ + +L A EN AA A I
Sbjct: 69 DEP---------HRNILYLGHL--PGLKPELSALENLHFWAAIHGGAQRTIEDALA---- 113
Query: 1123 ECGERGV------QLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQS 1165
G G QLS GQ++R+A+AR + + +LDE T+ALD
Sbjct: 114 AVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAG 162
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 5e-08
Identities = 48/206 (23%), Positives = 89/206 (43%), Gaps = 49/206 (23%)
Query: 362 FSYPSRPDSIVLKDFNLKVKAG-----KSVALVGASGSGKSTAIALVQRFYDADDGIVRI 416
++YP+ L +F L+V+ G + + ++G +G GK+T I ++ D+G + I
Sbjct: 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEI 58
Query: 417 DGVDI----RRLQLKWVRREMGLVSQ------EHALFGTSIKDNIMFGKLDATMDEVIAA 466
+ + + ++ + L+S H F T I + +++ +D
Sbjct: 59 ELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPL---QIEQILD----- 110
Query: 467 ATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDS 526
R++PE LSGG+ QR+AIA + K+ I LLDE ++ LD
Sbjct: 111 ----------REVPE------------LSGGELQRVAIAACLSKDADIYLLDEPSAYLDV 148
Query: 527 ESETLVQNALDQASLG--RTTLVVAH 550
E + + + + +T VV H
Sbjct: 149 EQRLMASKVIRRFAENNEKTAFVVEH 174
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 6e-08
Identities = 55/211 (26%), Positives = 100/211 (47%), Gaps = 34/211 (16%)
Query: 1014 SMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVE--QGSVRVDGMD-----VRELDVHWY 1066
S++V+ G V L G++G GKST++ ++ Y +G + +G + +R+ +
Sbjct: 25 SLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE---- 80
Query: 1067 RKHTALVSQEPVIYAG-NIRDNIVFGKLDASENEVVEAARA------ANAHEFISSLKDG 1119
R A++ QE + ++ +NI G NE+ A + ++ LK
Sbjct: 81 RAGIAIIHQELALVKELSVLENIFLG------NEITPGGIMDYDAMYLRAQKLLAQLK-- 132
Query: 1120 YETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-- 1177
+ L GQ+Q + IA+A+ + +L+LDE T++L +E LD I
Sbjct: 133 LDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASL---TESETAVLLDIIRDL 189
Query: 1178 --MGRTTIVVAHRLNTIKKL-DSIALVADGR 1205
G I ++H+LN +K + D+I ++ DGR
Sbjct: 190 KAHGIACIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 6e-08
Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 21/197 (10%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRL-QLKWVRR 431
L D +L V G+ ++G +G+GK+T + ++ D+G V G D+ L + + R
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77
Query: 432 EMGLVSQEHALF-GTSIKDNIM---------FGKLDATMDEVIAAATAANAHNFIRQLPE 481
+G Q+ +F ++ +N+ F L + I ++ E
Sbjct: 78 GIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDR--------IEEVLE 129
Query: 482 --GYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQA 539
G + LLS GQKQ + I ++++P +LLLDE + + E L
Sbjct: 130 TIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSL 189
Query: 540 SLGRTTLVVAHKLSTVR 556
+ + +VV H + VR
Sbjct: 190 AGKHSVVVVEHDMEFVR 206
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 6e-08
Identities = 56/194 (28%), Positives = 90/194 (46%), Gaps = 46/194 (23%)
Query: 359 HVKFSYPSRPDSIV--LKDFNLKVKAGKSVALVGASGSGKS-TAIALVQRFYDADDGIV- 414
V FS PD V + D N ++AG+++ +VG SGSGKS TA AL+ A +G +
Sbjct: 19 RVTFS---TPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLL--AANGRIG 73
Query: 415 ---RIDGVDIRRL---QLKWVRRE-MGLVSQEHALFGTS------IKDNIM--------F 453
+G +I L +L +R E + ++ Q+ TS + + +M
Sbjct: 74 GSATFNGREILNLPEKELNKLRAEQISMIFQDPM---TSLNPYMRVGEQLMEVLMLHKGM 130
Query: 454 GKLDATMDEV--IAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKN 511
K +A + V + A A ++ P + SGG +QR+ IA A++
Sbjct: 131 SKAEAFEESVRMLDAVKMPEARKRMKMYPHEF-----------SGGMRQRVMIAMALLCR 179
Query: 512 PVILLLDEATSALD 525
P +L+ DE T+ALD
Sbjct: 180 PKLLIADEPTTALD 193
|
Length = 330 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 8e-08
Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 29/215 (13%)
Query: 376 FNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQL-KWVRREMG 434
+ +V+AG+ + LVG +G+GKST +A + G ++ G + + R
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGS-GSIQFAGQPLEAWSAAELARHRAY 73
Query: 435 LVSQEHALFGTSIKDNIM--FGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGA 492
L Q+ F M F L + A+A N + + G + K+G
Sbjct: 74 LSQQQTPPF-------AMPVFQYLTLHQPDKTRTEAVASALNEVAEA-LGLDDKLGRSVN 125
Query: 493 LLSGGQKQRIAIARAIIK-----NPV--ILLLDEATSALDSESETLVQNALDQ-----AS 540
LSGG+ QR+ +A +++ NP +LLLDE ++LD Q ALD+
Sbjct: 126 QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQ----QAALDRLLSELCQ 181
Query: 541 LGRTTLVVAHKLS-TVRNADLIAVVDNGCLVEIGT 574
G ++ +H L+ T+R+AD + ++ G L+ G
Sbjct: 182 QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGR 216
|
Length = 248 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 8e-08
Identities = 51/206 (24%), Positives = 91/206 (44%), Gaps = 41/206 (19%)
Query: 1013 FSMEVKPGT-----SVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDV-RELDVHWY 1066
F++EV+ G+ +G++G +G GK+T I ++ G ++ D D+ ELD Y
Sbjct: 13 FTLEVEGGSISESEVIGILGPNGIGKTTFIKMLA-------GVLKPDEGDIEIELDTVSY 65
Query: 1067 RKHTALVSQEPVIYAGNIRDNIVFGKLDAS------ENEVVEAARAANAHEFISSLKDGY 1120
+ E G +RD ++ + E+ + + ++
Sbjct: 66 KPQYIKADYE-----GTVRD-LLSSITKDFYTHPYFKTEIAKPLQ----------IEQIL 109
Query: 1121 ETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMG- 1179
+ E E LSGG+ QR+AIA + ++ I LLDE ++ LDV+ + + + R
Sbjct: 110 DREVPE----LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENN 165
Query: 1180 -RTTIVVAHRLNTIKKLDSIALVADG 1204
+T VV H + I L +V +G
Sbjct: 166 EKTAFVVEHDIIMIDYLADRLIVFEG 191
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 8e-08
Identities = 69/259 (26%), Positives = 101/259 (38%), Gaps = 73/259 (28%)
Query: 321 ASIAASRI--FDRIDRVPEI-----------DGEDTKGLVLDEVRGEIEFEHVKFSYPSR 367
AS+ SRI DR+ V + +D G + I F F YP
Sbjct: 468 ASLVQSRIKALDRLGHVDAVVNDPDYKFEFPTPDDRPGPPI------ISFSDASFGYPGG 521
Query: 368 PDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLK 427
P ++ K+ N + +A+VG +G GKST + L+ G V +
Sbjct: 522 P--LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV-----------FR 568
Query: 428 WVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKV 487
+ M + SQ H LD + + ++ R P E K+
Sbjct: 569 SAKVRMAVFSQHHV------------DGLDLSSNPLLYMM---------RCFPGVPEQKL 607
Query: 488 -------GERGAL-------LSGGQKQRIAIARAIIKNPVILLLDEATSALDSES-ETLV 532
G G L LSGGQK R+A A+ K P ILLLDE ++ LD ++ E L+
Sbjct: 608 RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALI 667
Query: 533 QN-ALDQASLGRTTLVVAH 550
Q L Q + L+V+H
Sbjct: 668 QGLVLFQGGV----LMVSH 682
|
Length = 718 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 9e-08
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 494 LSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALD--QASLGRTTLVVAHK 551
LSGG++QR+ IA A++ P +L+ DE T+ALD + + L Q L L + H
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHN 216
Query: 552 LSTVRN-ADLIAVVDNGCLVE 571
LS VR AD +AV+ NG VE
Sbjct: 217 LSIVRKLADRVAVMQNGRCVE 237
|
Length = 529 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 1e-07
Identities = 54/215 (25%), Positives = 103/215 (47%), Gaps = 17/215 (7%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELD-VHWYR 1067
VL+ + G L+G +G GKST++ +I + G++ + G L ++
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQ 85
Query: 1068 KHTALVSQEPVIYAG-NIRDNIVFG--KLDASENEVVEAARAANAHEFISSLKDGYETEC 1124
LV QEP+++ ++++NI+FG K AS ++ + A + S E
Sbjct: 86 LGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEV-- 143
Query: 1125 GERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALD-VQSEQVVQEALDRIMMGRTTI 1183
RQ + I R ++R+ IL+LDE T++L ++E++ + + G +
Sbjct: 144 ---------ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIV 194
Query: 1184 VVAHRLNTIKKL-DSIALVADGRVVERGTYAQLTH 1217
++H+L I++L D I+++ DG + G A L+
Sbjct: 195 FISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229
|
Length = 510 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 1e-07
Identities = 50/220 (22%), Positives = 103/220 (46%), Gaps = 32/220 (14%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW-YRK 1068
L+ ++ V PG L+G++G GKST++ ++ ++ +G++ ++ ++ +LD +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80
Query: 1069 HTALVSQE-PVIYAGNIRDNIVFGKL-----------DASENEVVEAARAANAHEFISSL 1116
++ QE VI + +N+ G+ D E V A + L
Sbjct: 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAA---------MMLL 131
Query: 1117 KDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRI 1176
+ G + + E+ LS +Q + IA+ ++ + ++++DE TS+L E + L I
Sbjct: 132 RVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL-TNKE---VDYLFLI 187
Query: 1177 MM-----GRTTIVVAHRLNTIKKL-DSIALVADGRVVERG 1210
M G + ++H+L I+++ D ++ DG V G
Sbjct: 188 MNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-07
Identities = 50/207 (24%), Positives = 91/207 (43%), Gaps = 60/207 (28%)
Query: 352 RGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADD 411
R +E E++ + + P + K+ NL ++AG+ +A++G +G GK+T + + + D
Sbjct: 317 RNALEVENLTKGFDNGP---LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDS 373
Query: 412 GIVRIDGVDIRRLQLKWVRR-EMGLVSQEHA--------LFG-----TSIKDNI-----M 452
G V KW +G +Q+HA LF D+
Sbjct: 374 GTV------------KWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGT 421
Query: 453 FGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNP 512
G+L + D++ + KV LSGG+K R+ + +++ P
Sbjct: 422 LGRLLFSQDDIKKSV------------------KV------LSGGEKGRMLFGKLMMQKP 457
Query: 513 VILLLDEATSALDSES-ETLVQNALDQ 538
+L++DE T+ +D ES E+L AL++
Sbjct: 458 NVLVMDEPTNHMDMESIESL-NMALEK 483
|
Length = 530 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 29/218 (13%)
Query: 1014 SMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALV 1073
S ++ G ++ ++G++G GKST+ ++ + G + +D + D + + ++
Sbjct: 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMI 92
Query: 1074 SQEPVIYAGNIRDNI---------VFGKLDASENE--VVEAARAANAHEFISSLKD--GY 1120
Q+P + N R I + L+ + E ++E R + L D Y
Sbjct: 93 FQDPST-SLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQ------VGLLPDHASY 145
Query: 1121 ETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQ-SEQVVQEALD-RIMM 1178
L+ GQ+QR+ +ARA+I P +++ DEA ++LD+ Q++ L+ +
Sbjct: 146 YPH------MLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQ 199
Query: 1179 GRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
G + I V L +K + D + ++ G VVERG+ A +
Sbjct: 200 GISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADV 237
|
Length = 267 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 64/234 (27%), Positives = 97/234 (41%), Gaps = 58/234 (24%)
Query: 375 DFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQL-------- 426
D + + G+ + +VG SGSGK+T + + D G V D + L
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83
Query: 427 -KWVRREMGLVSQEHAL--------FGTSIKDNIM------FGKLDAT----MDEV-IAA 466
+ +R E G V Q H G +I + +M +G + AT ++ V I A
Sbjct: 84 RRLLRTEWGFVHQ-HPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA 142
Query: 467 ATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDS 526
A I LP + SGG +QR+ IAR ++ +P ++ +DE T LD
Sbjct: 143 AR-------IDDLPTTF-----------SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDV 184
Query: 527 ESETLVQ-NALD-----QASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIG 573
VQ LD LG ++V H L+ R A + V+ G +VE G
Sbjct: 185 S----VQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESG 234
|
Length = 258 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 2e-07
Identities = 66/236 (27%), Positives = 101/236 (42%), Gaps = 55/236 (23%)
Query: 1014 SMEVKPGTSVGLVGKSGCGKS----TVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK- 1068
S VK G VG+VG+SG GKS ++GLI V + +G D++ + R
Sbjct: 27 SYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNL 86
Query: 1069 ---HTALVSQEPVIYAG-------NIRDNIVFGKLDASENEVVEAARAANAHEFI----- 1113
A++ Q+P+ I + I K+ N+ RA + +
Sbjct: 87 VGAEVAMIFQDPMTSLNPCYTVGFQIMEAI---KVHQGGNKKTRRQRAIDLLNQVGIPDP 143
Query: 1114 SSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSE-QVVQEA 1172
+S D Y QLSGG QR+ IA AI P +L+ DE T+ALDV + Q+++
Sbjct: 144 ASRLDVYPH-------QLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELL 196
Query: 1173 LD---RIMMGRTTIVVAHRLNTIKKLDSIALVAD----------GRVVERGTYAQL 1215
L+ + M +++ H L ALVA+ G+VVE G +
Sbjct: 197 LELQQKENMA--LVLITHDL---------ALVAEAAHKIIVMYAGQVVETGKAHDI 241
|
Length = 326 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 2e-07
Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 38/188 (20%)
Query: 1003 SRPDALVLRQFSMEVKPGTSVGLVGKSGCGKST----VIGLIQRFYDVEQGSVRVDGMDV 1058
R + ++ S + G V + G +G GK++ + GL + + G V G +
Sbjct: 10 ERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP----DAGEVLWQGEPI 65
Query: 1059 RELDVHWYRK-----H-----TALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAAN 1108
R +++ H T L + E + + + + + EA
Sbjct: 66 RRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG-------PGDDEALWEALAQVG 118
Query: 1109 AHEFISSLKDGYE-TECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQ 1167
G+E QLS GQ++R+A+AR + + +LDE +A+D Q
Sbjct: 119 LA--------GFEDVPVR----QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVA 166
Query: 1168 VVQEALDR 1175
++ L +
Sbjct: 167 RLEALLAQ 174
|
Length = 204 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 2e-07
Identities = 56/225 (24%), Positives = 109/225 (48%), Gaps = 25/225 (11%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLI--QRFYDVEQGSVRVDGMDVRE---LDV 1063
+LR+ + +PG L+G SG GK+T++ ++ ++ +G +R+ G ++ +
Sbjct: 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 954
Query: 1064 HWYRKHTALVS-----QEPVIYAGNIRDNIVFGKLDASE--NEVVEAARAANAHEFISSL 1116
Y + + S +E +IY+ +R K + +EV+E + +L
Sbjct: 955 SGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVE-------LDNL 1007
Query: 1117 KDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEAL-DR 1175
KD G G LS QR+R+ IA ++ NP+I+ +DE TS LD ++ +V + +
Sbjct: 1008 KDAIVGLPGVTG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1065
Query: 1176 IMMGRTTIVVAHR--LNTIKKLDSIALVA-DGRVVERGTYAQLTH 1217
+ GRT + H+ ++ + D + L+ G+V+ G + +H
Sbjct: 1066 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSH 1110
|
Length = 1470 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 56/230 (24%), Positives = 94/230 (40%), Gaps = 48/230 (20%)
Query: 374 KDFNLKVKAGKSVALVGASGSGKSTAIALV---------QRFYDADDG----IVRIDGVD 420
+D + + G+ + +VG SGSGK+T + + Y DG + + +
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82
Query: 421 IRRLQLKWVRREMGLVSQEHA-------LFGTSIKDNIMFGKLDATMDEVIAAATAANAH 473
RRL +R E G V Q G +I + +M A A +
Sbjct: 83 RRRL----LRTEWGFVHQNPRDGLRMQVSAGGNIGERLM--------------AIGARHY 124
Query: 474 NFIRQLPEGY-------ETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDS 526
IR + + ++ + SGG +QR+ IAR ++ P ++ +DE T LD
Sbjct: 125 GNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDV 184
Query: 527 ESETLVQNALDQAS--LGRTTLVVAHKLSTVR-NADLIAVVDNGCLVEIG 573
+ + + L LG ++V H L+ R AD + V+ G +VE G
Sbjct: 185 SVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234
|
Length = 258 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 58/219 (26%), Positives = 98/219 (44%), Gaps = 27/219 (12%)
Query: 377 NLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLV 436
NL+V+ + V+L+G +G+GK+T + FY G + + G I L + R MG+V
Sbjct: 25 NLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIAR-MGVV 83
Query: 437 S--QEHALFG--TSIKDNIMFGKLDATMDEVIAA--ATAANAHNFIRQLPEGYE------ 484
Q LF T I +N++ + + + T A F R E +
Sbjct: 84 RTFQHVRLFREMTVI-ENLLVAQHQQLKTGLFSGLLKTPA----FRRAESEALDRAATWL 138
Query: 485 -----TKVGERGA-LLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQ 538
+ R A L+ GQ++R+ IAR ++ P IL+LDE + L+ + + + +
Sbjct: 139 ERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAE 198
Query: 539 --ASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGT 574
T L++ H + V +D I VV+ G + GT
Sbjct: 199 LRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGT 237
|
Length = 255 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 51/217 (23%), Positives = 97/217 (44%), Gaps = 21/217 (9%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQL-KWVRR 431
L + +V+AG+ + LVG +G+GKST +A + G ++ G + + R
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-SGSIQFAGQPLEAWSATELARH 73
Query: 432 EMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERG 491
L Q+ F + + + D T E++ N + + K+G
Sbjct: 74 RAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELL---------NDVAGA-LALDDKLGRST 123
Query: 492 ALLSGGQKQRIAIARAIIK-----NPV--ILLLDEATSALDSESETLVQNALDQ-ASLGR 543
LSGG+ QR+ +A +++ NP +LLLDE ++LD ++ + L G
Sbjct: 124 NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGL 183
Query: 544 TTLVVAHKLS-TVRNADLIAVVDNGCLVEIGTHNDLI 579
++ +H L+ T+R+A ++ G L+ G +++
Sbjct: 184 AIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 52/217 (23%), Positives = 105/217 (48%), Gaps = 17/217 (7%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRRE 432
+K + ++ G+++A++G +GSGKST ++ + G + ID + + +
Sbjct: 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQR 88
Query: 433 MGLVSQEHALFGTSIKDNIMFGK-LDATM---DEVIAAATAANAHNFIRQ---LPEGYET 485
+ ++ Q+ + TS+ + LD + ++ +RQ LP+
Sbjct: 89 IRMIFQDPS---TSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPD---- 141
Query: 486 KVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALD-SESETLVQNALD-QASLGR 543
+L+ GQKQR+ +ARA+I P +++ DEA ++LD S L+ L+ Q G
Sbjct: 142 HASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGI 201
Query: 544 TTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLI 579
+ + V L +++ +D + V+ G +VE G+ D++
Sbjct: 202 SYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVL 238
|
Length = 267 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 5e-07
Identities = 56/232 (24%), Positives = 107/232 (46%), Gaps = 25/232 (10%)
Query: 334 RVPEID--GEDTKGLVLDEVRGEIE-------FEHVKFSYPSRPDSIVLKDFNLKVKAGK 384
RV EI+ E + L RG +E FE++ P+ ++++ + +V +G
Sbjct: 422 RVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSFEVPSGN 479
Query: 385 SVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWV--RREMGLVS-QEHA 441
++ + G +G GKS+ ++ + G + + +L +V R M L + ++
Sbjct: 480 NLLICGPNGCGKSSLFRILGELWPVYGGRLTKP----AKGKLFYVPQRPYMTLGTLRDQI 535
Query: 442 LFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQR 501
++ S +D G D +++++ + + + EG + V + +LSGG+KQR
Sbjct: 536 IYPDSSEDMKRRGLSDKDLEQIL---DNVQLTHILER--EGGWSAVQDWMDVLSGGEKQR 590
Query: 502 IAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLS 553
IA+AR P +LDE TSA+ + E + + G T V+H+ S
Sbjct: 591 IAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKS 640
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 5e-07
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 1131 LSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGR--TTIVVAHR 1188
LSGG+ QR+AIA + R+ + LLDE ++ LDV+ V +A+ RI R T +VV H
Sbjct: 454 LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHD 513
Query: 1189 LNTIKKLDSIALVADGRVVERGTYAQLTHMR 1219
+ I + +V +G + G + MR
Sbjct: 514 IYMIDYISDRLMVFEGEPGKHGHASGPMDMR 544
|
Length = 590 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 6e-07
Identities = 63/243 (25%), Positives = 96/243 (39%), Gaps = 66/243 (27%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAI------ALVQRF---------YDADDGIVRID 417
LK+ ++ + G + G SGSGKS+ I AL +R +D +G+ ID
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHID 70
Query: 418 GV------------------------DIRRL-----QLKWVRREMGLVSQEHALFGTSIK 448
V +IR L + K RE V + G SI
Sbjct: 71 KVIVIDQSPIGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYK----GKSIA 126
Query: 449 DNIMFGKLDATMDEVIAA---ATAANAHNFIRQLPE---GYETKVGERGALLSGGQKQRI 502
D LD T++E A ++ L + GY K+G+ LSGG+ QRI
Sbjct: 127 D-----VLDMTVEE--ALEFFENIPKIARKLQTLCDVGLGY-IKLGQPATTLSGGEAQRI 178
Query: 503 AIARAIIK---NPVILLLDEATSALDSESETLVQNALDQ-ASLGRTTLVVAHKLSTVRNA 558
+A+ + K + +LDE T+ L + L + G T +V+ H L ++ A
Sbjct: 179 KLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCA 238
Query: 559 DLI 561
D I
Sbjct: 239 DWI 241
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 7e-07
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
IE E++ +Y + +LKD +L + G + LVG +G+GKST + L+ + D+GIV
Sbjct: 1 IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
Query: 415 RID 417
Sbjct: 58 TWG 60
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 7e-07
Identities = 59/209 (28%), Positives = 91/209 (43%), Gaps = 56/209 (26%)
Query: 994 MRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVI----GLIQRFYDVEQG 1049
M RV P P +L+ S+ PG +G++G +G GKST++ G+ + F +G
Sbjct: 9 MNRVSKVVP--PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF----EG 62
Query: 1050 SVRV-DGMDVRELDVHWYRKHTALVSQEPVIYAG-NIRDNI------VFGKLDASENEVV 1101
R G+ V L QEP + +R+N+ V LD NE+
Sbjct: 63 EARPAPGIKVGYL------------PQEPQLDPEKTVRENVEEGVAEVKAALDRF-NEIY 109
Query: 1102 EA---------------AR------AANAHEFISSLK---DGYETECGERGV-QLSGGQR 1136
A AA+A + S L+ D + V +LSGG+R
Sbjct: 110 AAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGER 169
Query: 1137 QRIAIARAIIRNPTILLLDEATSALDVQS 1165
+R+A+ R ++ P +LLLDE T+ LD +S
Sbjct: 170 RRVALCRLLLEKPDMLLLDEPTNHLDAES 198
|
Length = 556 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 8e-07
Identities = 63/244 (25%), Positives = 102/244 (41%), Gaps = 40/244 (16%)
Query: 366 SRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAI-ALVQRFYDADD-------GIVRID 417
+R +L+D +L+++ G+ AL+G +G+GKST + AL G V ++
Sbjct: 10 ARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLN 69
Query: 418 GVDIRRLQ-LKWVRREMGLVSQEHALFGTSIKDNIMFGKL--------DATMDEVIAAAT 468
G + + + R L F S ++ ++ G+ D IA
Sbjct: 70 GEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQA 129
Query: 469 AANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAI---------IKNPVILLLDE 519
A A G VG LSGG+ R+ AR + + P LLLDE
Sbjct: 130 LALA---------GATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDE 180
Query: 520 ATSALD-SESETLVQNALDQA---SLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTH 575
T+ALD + L+ A +LG +V L+ R+AD IA++ +G +V G
Sbjct: 181 PTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAA-RHADRIAMLADGAIVAHGAP 239
Query: 576 NDLI 579
D++
Sbjct: 240 ADVL 243
|
Length = 272 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 1e-06
Identities = 57/231 (24%), Positives = 101/231 (43%), Gaps = 26/231 (11%)
Query: 366 SRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAD---DGIVRIDGVDIR 422
+ D ++D + V G+ + G GSG++ L+ + D G +R++G DI
Sbjct: 272 TSRDRKKVRDISFSVCRGEILGFAGLVGSGRTE---LMNCLFGVDKRAGGEIRLNGKDIS 328
Query: 423 -RLQLKWVRREMGLVSQ---EHALFGT-SIKDNIMF------GKLDATM---DEVIAAAT 468
R L V++ M +++ ++ F SI N+ G M EV T
Sbjct: 329 PRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRT 388
Query: 469 AANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSES 528
A N + + E LSGG +Q++ I++ + P +++ DE T +D +
Sbjct: 389 AENQRELLALKCHSVNQNITE----LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGA 444
Query: 529 ETLVQNALDQ-ASLGRTTLVVAHKLSTVRNA-DLIAVVDNGCLVEIGTHND 577
+ + + Q A G+ L+V+ +L + D IAV G L +I T+ D
Sbjct: 445 KAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRD 495
|
Length = 510 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 60/233 (25%), Positives = 97/233 (41%), Gaps = 52/233 (22%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDV------ 1063
R S ++ PG +G+VG+SG GK+T++ + + G V D + D+
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81
Query: 1064 ---HWYRKHTALVSQEP-------VIYAGNIRDNIV------FGKLDASEN---EVVEAA 1104
R V Q P V GNI + ++ +G + A+ E VE
Sbjct: 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEID 141
Query: 1105 RAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQ 1164
+ + D T G G+Q QR+ IAR ++ +P ++ +DE T LDV
Sbjct: 142 A--------ARIDDLPTTFSG--GMQ------QRLQIARNLVTHPRLVFMDEPTGGLDVS 185
Query: 1165 SEQVVQEALDRIM------MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERG 1210
VQ L ++ +G ++V H L + L + ++ GRVVE G
Sbjct: 186 ----VQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESG 234
|
Length = 258 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 1e-06
Identities = 57/233 (24%), Positives = 96/233 (41%), Gaps = 58/233 (24%)
Query: 354 EIEFE----------HVKFSYPSRPDSIVLKDFNLKVKAGKS-----VALVGASGSGKST 398
IEFE YP + L DF+L+V+ G+ + +VG +G GK+T
Sbjct: 323 PIEFEERPPRDESERETLVEYPDL--TKKLGDFSLEVEGGEIYEGEVIGIVGPNGIGKTT 380
Query: 399 AIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDA 458
L+ D+G V + + I S K + D
Sbjct: 381 FAKLLAGVLKPDEGEVDPE-LKI------------------------SYKPQYIKPDYDG 415
Query: 459 TMDEVIAAATAANAHNFIR-------QLPEGYETKVGERGALLSGGQKQRIAIARAIIKN 511
T+++++ + T ++ + QL + V + LSGG+ QR+AIA + ++
Sbjct: 416 TVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKD----LSGGELQRVAIAACLSRD 471
Query: 512 PVILLLDEATSALDSESETLVQNALDQASLGR--TTLVVAHKLSTVRNADLIA 562
+ LLDE ++ LD E V A+ + + R T LVV H + + D I+
Sbjct: 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMI---DYIS 521
|
Length = 590 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-06
Identities = 76/313 (24%), Positives = 129/313 (41%), Gaps = 52/313 (16%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKST---AIA--LVQRFYDADDGIVRIDGVDIRRLQL 426
+LK + +K G+ ++G GSG ST IA F+ +G++ DG+ ++
Sbjct: 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDG-FHIGVEGVITYDGITPEEIK- 133
Query: 427 KWVRREMGLVSQEHALFGT-SIKDNIMFGKLDAT-------MDEVIAAATAANAHNFIRQ 478
K R ++ ++ F ++ + + F T + A A+ +
Sbjct: 134 KHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYG 193
Query: 479 LPEGYETKVGE---RGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNA 535
L TKVG RG +SGG+++R++IA A + I D AT LDS + A
Sbjct: 194 LSHTRNTKVGNDFVRG--VSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRA 251
Query: 536 L-DQASLGRTTLVVAHKLSTVRNA----DLIAVVDNGCLVEIGTHNDLINRIDGHYAKMA 590
L A++ TT +VA ++A D + V+ G + G ++ ++ KM
Sbjct: 252 LKTSANILDTTPLVA-IYQCSQDAYELFDKVIVLYEGYQIYFG----PADKAKQYFEKMG 306
Query: 591 KLQRQFSCDDQETIPETHVSSVTRSSGGRLSAARSSPAIFASPLPVIDSPQPVTYLPPSF 650
F C D++T + ++S+T SPA P + P T P
Sbjct: 307 -----FKCPDRQTTAD-FLTSLT------------SPA-ERQIKPGYEKKVPRT---PQE 344
Query: 651 FRLLSLNAPEWKQ 663
F N+PE+ Q
Sbjct: 345 FETYWRNSPEYAQ 357
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 2e-06
Identities = 29/83 (34%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Query: 1131 LSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMG-RTTIV-VAHR 1188
LSGG++QR+AI RA++ P +LL+DE ++LD+ ++ + L+R+ I+ V+H
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHS 188
Query: 1189 LNTIKKL-DSIALVADGRVVERG 1210
L+ I +L D + ++ G+V G
Sbjct: 189 LDEILRLADRVVVLEQGKVKAFG 211
|
Length = 352 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-06
Identities = 62/219 (28%), Positives = 104/219 (47%), Gaps = 42/219 (19%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALV-----QRFYDA 409
I + SY RP +L + + +V G+ +VG +G+GKST ++L+ Q + +
Sbjct: 261 IVLNNGVVSYNDRP---ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGY--S 315
Query: 410 DD----GIVRIDGVDIRRLQLKW-VRREMGLVSQEHAL---FGTSIKDNIMFGKLDATMD 461
+D G R G I W +++ +G VS L TS+++ I+ G D+
Sbjct: 316 NDLTLFGRRRGSGETI------WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSI-- 367
Query: 462 EVIAAATAANAHNFIRQLPEGYETKVGERGAL-------LSGGQKQRIA-IARAIIKNPV 513
+ A + ++L + + +G LS GQ QR+A I RA++K+P
Sbjct: 368 GIYQAVSDRQ-----QKLAQQWLDILGIDKRTADAPFHSLSWGQ-QRLALIVRALVKHPT 421
Query: 514 ILLLDEATSALDSESETLVQNALDQ-ASLGRTTLV-VAH 550
+L+LDE LD + LV+ +D S G T L+ V+H
Sbjct: 422 LLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSH 460
|
Length = 490 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 3e-06
Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 20/170 (11%)
Query: 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI 413
+E +V F+Y + NL +K G+ + L+G +GSGKST L+ Y G
Sbjct: 322 TLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGE 379
Query: 414 VRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAH 473
+ +DG + Q + R LF D +F +L + A A
Sbjct: 380 ILLDGKPVTAEQPEDYR----------KLFSAVFTDFHLFDQL---LGPEGKPANPALVE 426
Query: 474 NFIRQLPEGYETKVGERGAL----LSGGQKQRIAIARAIIKNPVILLLDE 519
++ +L ++ ++ E G + LS GQK+R+A+ A+ + ILLLDE
Sbjct: 427 KWLERLKMAHKLEL-EDGRISNLKLSKGQKKRLALLLALAEERDILLLDE 475
|
Length = 547 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 3e-06
Identities = 62/251 (24%), Positives = 108/251 (43%), Gaps = 59/251 (23%)
Query: 996 RVDFAYPSRPDALV--LRQFSMEVKPGTSVGLVGKSGCGKS----TVIGLIQRFYDVEQG 1049
RV F S PD V + + ++ G ++G+VG+SG GKS ++GL+ + G
Sbjct: 19 RVTF---STPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIG-G 74
Query: 1050 SVRVDGMDVRELDVHWYRK----HTALVSQEPVI----YAGNIRDNIV--------FGKL 1093
S +G ++ L K +++ Q+P+ Y + + ++ K
Sbjct: 75 SATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYM-RVGEQLMEVLMLHKGMSKA 133
Query: 1094 DASENEV--VEAARAANA--------HEFISSLKDGYETECGERGVQLSGGQRQRIAIAR 1143
+A E V ++A + A HEF SGG RQR+ IA
Sbjct: 134 EAFEESVRMLDAVKMPEARKRMKMYPHEF-------------------SGGMRQRVMIAM 174
Query: 1144 AIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKKL-DSIAL 1200
A++ P +L+ DE T+ALDV + + L+ + I++ H L + + D + +
Sbjct: 175 ALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLV 234
Query: 1201 VADGRVVERGT 1211
+ GR +E G
Sbjct: 235 MYAGRTMEYGN 245
|
Length = 330 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 4e-06
Identities = 56/254 (22%), Positives = 91/254 (35%), Gaps = 97/254 (38%)
Query: 1017 VKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQE 1076
+PG VG++G +G GKS TAL
Sbjct: 97 PRPGKVVGILGPNGIGKS-----------------------------------TALK--- 118
Query: 1077 PVIYAGNIRDNIVFGKLDA--SENEVVEAARAANAHEFISSLKDG--------------- 1119
I AG ++ N G+ + S +EV++ R + L +G
Sbjct: 119 --ILAGELKPN--LGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIP 174
Query: 1120 --YETECG-------ERGV-------------------QLSGGQRQRIAIARAIIRNPTI 1151
+ + G ERG +LSGG+ QR+AIA A++R+ +
Sbjct: 175 KVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADV 234
Query: 1152 LLLDEATSALDVQSE----QVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVV 1207
DE +S LD++ +V++E + G+ IVV H L + L + G
Sbjct: 235 YFFDEPSSYLDIRQRLNAARVIRELAED---GKYVIVVEHDLAVLDYLSDFVHILYG--- 288
Query: 1208 ERGTYAQLTHMRGA 1221
E G Y ++ +
Sbjct: 289 EPGVYGVVSKPKSV 302
|
Length = 591 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 4e-06
Identities = 47/202 (23%), Positives = 89/202 (44%), Gaps = 31/202 (15%)
Query: 369 DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRR----- 423
D +L+ + + AG + L G++G+GK+T + L+ + + G + + I++
Sbjct: 13 DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTY 72
Query: 424 -LQLKWVRREMG----LVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQ 478
QL +V G L +E+ L+ +I F + E+ + + ++
Sbjct: 73 QKQLCFVGHRSGINPYLTLRENCLY------DIHFSPGAVGITELCRLFSLEHLIDY--- 123
Query: 479 LPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSES-ETLVQNALD 537
P G LLS GQK+++A+ R + + LLDE ALD S T++ +
Sbjct: 124 -PCG----------LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQE 172
Query: 538 QASLGRTTLVVAHKLSTVRNAD 559
+ G L+ +H+ + AD
Sbjct: 173 HRAKGGAVLLTSHQDLPLNKAD 194
|
Length = 200 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 4e-06
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Query: 1130 QLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRL 1189
+LSGG+ QR+AIA A++R+ DE TS LD++ V + + G+ +VV H L
Sbjct: 212 ELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDL 271
Query: 1190 NTIKKLDSIALVADGRVV---ERGTYAQLTHMRGA 1221
LD +AD + E G Y ++ +G
Sbjct: 272 AV---LD---YLADNVHIAYGEPGAYGVVSKPKGV 300
|
Length = 590 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 1126 ERGV-QLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSE----QVVQEALDRIMMGR 1180
+R + QLSGG+ QR+AIA A+ R+ DE +S LD++ ++++E
Sbjct: 134 DRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRE---LAEDDN 190
Query: 1181 TTIVVAHRL 1189
+VV H L
Sbjct: 191 YVLVVEHDL 199
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 4e-06
Identities = 54/193 (27%), Positives = 82/193 (42%), Gaps = 25/193 (12%)
Query: 366 SRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQ 425
SR + V + V AG+++ + G +G+GK+T + ++ + G ++IDG R
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79
Query: 426 LKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYET 485
R M + L K D + E + + +Q+P
Sbjct: 80 RS---RFMAYLGHLPGL------------KADLSTLENLHFLCGLHGRR-AKQMPGSALA 123
Query: 486 KVGERG---AL---LSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQA 539
VG G L LS GQK+R+A+AR + + LLDE + LD E TLV N + A
Sbjct: 124 IVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLV-NRMISA 182
Query: 540 SL--GRTTLVVAH 550
L G LV H
Sbjct: 183 HLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 5e-06
Identities = 64/263 (24%), Positives = 116/263 (44%), Gaps = 30/263 (11%)
Query: 965 DRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVG 1024
+RQ +I G ++ D R ++L K+ Y V R + V+PG G
Sbjct: 1924 ERQRIISGGNKT-DILRLNELTKV------------YSGTSSPAVDR-LCVGVRPGECFG 1969
Query: 1025 LVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRE--LDVHWYRKHTALVSQEPVIYAG 1082
L+G +G GK+T ++ V G V G + DVH + + G
Sbjct: 1970 LLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTG 2029
Query: 1083 NIRDNI-VFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAI 1141
R+++ ++ +L E +E + AN I SL G SGG +++++
Sbjct: 2030 --REHLYLYARLRGVPAEEIE--KVANWS--IQSL--GLSLYADRLAGTYSGGNKRKLST 2081
Query: 1142 ARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM-GRTTIVVAHRLNTIKKL-DSIA 1199
A A+I P ++LLDE T+ +D Q+ +++ + I+ GR ++ +H + + L +A
Sbjct: 2082 AIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLA 2141
Query: 1200 LVADGRVVERGTYAQLTHMRGAF 1222
++ G GT + H++ F
Sbjct: 2142 IMVKGAFQCLGT---IQHLKSKF 2161
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 5e-06
Identities = 57/219 (26%), Positives = 93/219 (42%), Gaps = 43/219 (19%)
Query: 999 FAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDV 1058
F YP P L+ + + + + + +VG +G GKST++ LI G+V
Sbjct: 516 FGYPGGP--LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV------F 567
Query: 1059 RELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKD 1118
R V A+ SQ V LD S N ++ R F +
Sbjct: 568 RSAKVR-----MAVFSQHHV------------DGLDLSSNPLLYMMRC-----FPGVPEQ 605
Query: 1119 GYETECGERGVQ----------LSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQV 1168
G GV LSGGQ+ R+A A+ + P ILLLDE ++ LD+ + +
Sbjct: 606 KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEA 665
Query: 1169 VQEALDRIMMGRTTIVVAHRLNTIK-KLDSIALVADGRV 1206
+ + L G ++V+H + I +D + +V++G+V
Sbjct: 666 LIQGLVLFQGG--VLMVSHDEHLISGSVDELWVVSEGKV 702
|
Length = 718 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 5e-06
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 1093 LDASENEVVEA-ARAANAHEFISSLKD---GYETECGERGVQLSGGQRQRIAIARAIIR- 1147
LD + E +E + +L D GY G+ LSGG+ QRI +A+ + +
Sbjct: 129 LDMTVEEALEFFENIPKIARKLQTLCDVGLGYIK-LGQPATTLSGGEAQRIKLAKELSKR 187
Query: 1148 --NPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKKLDSI 1198
T+ +LDE T+ L + + E L R++ G T +V+ H L+ IK D I
Sbjct: 188 STGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWI 241
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 6e-06
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
IE+ + Y + +L+ S+ + PG +GLVG++G GKST++ LI + ++G V
Sbjct: 1 IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
Query: 1052 RVD 1054
Sbjct: 58 TWG 60
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 7e-06
Identities = 50/191 (26%), Positives = 83/191 (43%), Gaps = 59/191 (30%)
Query: 1006 DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW 1065
D L++ S ++ PG VG++G +G GKST+ +I + G++++ G V+
Sbjct: 334 DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI-GETVK------ 386
Query: 1066 YRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYET-EC 1124
+ Y RD LD ++ V E IS G + +
Sbjct: 387 ------------LAYVDQSRDA-----LDPNKT-VWEE---------IS---GGLDIIQL 416
Query: 1125 GERGV---------------------QLSGGQRQRIAIARAIIRNPTILLLDEATSALDV 1163
G+R V QLSGG+R R+ +A+ + +LLLDE T+ LDV
Sbjct: 417 GKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDV 476
Query: 1164 QSEQVVQEALD 1174
++ + ++EAL
Sbjct: 477 ETLRALEEALL 487
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 9e-06
Identities = 102/434 (23%), Positives = 172/434 (39%), Gaps = 46/434 (10%)
Query: 179 SLVAFPTLLLL----IIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAE 234
+L A LL+L +IP M +L + AY AN + S+I V
Sbjct: 1759 NLPALVALLMLYGWAVIPMMYPASFLFDVPSTAYVALSCANLFIGINSSAITFVLELFEN 1818
Query: 235 RRIIDRYEAILDSTTKLGIKQGTAKGLAVGSTGLSFAIWAFLAWYGSHLVM--FKGETGG 292
R + R+ A+L + +GL LS A+ A +G F+ + G
Sbjct: 1819 NRTLLRFNAMLRKLLIVFPHFCLGRGLI--DLALSQAVTDVYAQFGEEHSANPFQWDLIG 1876
Query: 293 KIYAA----GISFILSGLSLGSALPELKYFTEASIAASRIFDRIDRVPE------IDGED 342
K A G+ + L L + ++ E A IFD D V E G
Sbjct: 1877 KNLVAMAVEGVVYFLLTLLIQHHFFLSRWIAEP--AKEPIFDEDDDVAEERQRIISGGNK 1934
Query: 343 TKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIAL 402
T L L+E+ +S S P + + V+ G+ L+G +G+GK+T +
Sbjct: 1935 TDILRLNELTK-------VYSGTSSP---AVDRLCVGVRPGECFGLLGVNGAGKTTTFKM 1984
Query: 403 VQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGK----LDA 458
+ G + G I + V + MG Q A+ D+++ G+ L A
Sbjct: 1985 LTGDTTVTSGDATVAGKSILT-NISDVHQNMGYCPQFDAI------DDLLTGREHLYLYA 2037
Query: 459 TMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLD 518
+ V A A+ I+ L G SGG K++++ A A+I P ++LLD
Sbjct: 2038 RLRGVPAEEIEKVANWSIQSL--GLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLD 2095
Query: 519 EATSALDSESETLVQNAL-DQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHN 576
E T+ +D ++ ++ N + GR ++ +H + +A++ G +GT
Sbjct: 2096 EPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQ 2155
Query: 577 DLINRI-DGHYAKM 589
L ++ DG+ M
Sbjct: 2156 HLKSKFGDGYIVTM 2169
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 494 LSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASL--GRTTLVVAHK 551
LSGG+ QR+AIA A+++N L DE ++ LD E A+ + S +T LVV H
Sbjct: 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD 131
Query: 552 LSTVRN-ADLIAVVD 565
L+ + +D I V +
Sbjct: 132 LAVLDYLSDRIHVFE 146
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 1e-05
Identities = 45/183 (24%), Positives = 72/183 (39%), Gaps = 54/183 (29%)
Query: 366 SRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRL- 424
R + I+ + + AG+ V + G +G+GK++ + ++ D G V G IRR
Sbjct: 10 ERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR 69
Query: 425 -----QLKWVRREMGLVSQEHALFGTSIKD------NIMF-----GKLDATMDEVIAAAT 468
L ++ G H IK N+ F G D DE + A
Sbjct: 70 DEYHQDLLYL----G-----HQ---PGIKTELTALENLRFYQRLHGPGD---DEALWEAL 114
Query: 469 AANAHNFIRQLPEGYETKVGERG------ALLSGGQKQRIAIARAIIKNPVILLLDEATS 522
A +VG G LS GQ++R+A+AR + + +LDE +
Sbjct: 115 A----------------QVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFT 158
Query: 523 ALD 525
A+D
Sbjct: 159 AID 161
|
Length = 204 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-05
Identities = 48/165 (29%), Positives = 73/165 (44%), Gaps = 17/165 (10%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLK----- 427
L + NLKV+ AL+G +G+GKST + + Y D G + G +I K
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALEN 73
Query: 428 ---WVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYE 484
V +E+ LV Q S+ DN+ G+ V + +L +
Sbjct: 74 GISMVHQELNLVLQ------RSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDID 127
Query: 485 TKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESE 529
+ + A LS Q Q I IA+A N I+++DE TS+L +E E
Sbjct: 128 PR--AKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSL-TEKE 169
|
Length = 491 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 26/173 (15%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRRE 432
L L V G+ +ALVG +G+GKST + ++ Y D G + G + + +
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLG---KEVTFNGPKSS 76
Query: 433 ----MGLVSQEHALFGT-SIKDNIM--------FGKLDATMDEVIAAATAANAHNFIRQL 479
+G++ QE L +I +NI FG++D ++ A A A L
Sbjct: 77 QEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRID--WKKMYAEADKLLAR---LNL 131
Query: 480 PEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSAL-DSESETL 531
+ VGE LS G++Q + IA+ + ++++DE T AL D+E+E+L
Sbjct: 132 RFSSDKLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESL 180
|
Length = 501 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 1e-05
Identities = 63/244 (25%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRRE 432
L + + +V G+ V ++G +GSGKST L+ + G V I G +
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG------SAALIAIS 93
Query: 433 MGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATA-ANAHNFIRQLPEGYETKVGERG 491
GL Q + +K +M G + E+I A+ FI Q + Y
Sbjct: 94 SGLNGQLTGIENIELK-GLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTY-------- 144
Query: 492 ALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS----LGRTTLV 547
S G K R+ A ++ NP IL++DEA S D +T + LD+ + G+T
Sbjct: 145 ---SSGMKSRLGFAISVHINPDILVIDEALSVGD---QTFTKKCLDKMNEFKEQGKTIFF 198
Query: 548 VAHKLSTVRNADLIAV-VDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQFSCDDQETIPE 606
++H LS V++ A+ + G + E G ++++ HY + K Q S ++++ E
Sbjct: 199 ISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVD----HYDEFLKKYNQMSVEERKDFRE 254
Query: 607 THVS 610
+S
Sbjct: 255 EQIS 258
|
Length = 549 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 1130 QLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHR- 1188
SGG R RIA+ARA+ P +LLLDE T+ LD+ + ++ L + +T IVV+H
Sbjct: 344 TFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYL--LKWPKTFIVVSHAR 401
Query: 1189 --LNTI 1192
LNT+
Sbjct: 402 EFLNTV 407
|
Length = 718 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 2e-05
Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 19/160 (11%)
Query: 1017 VKPGTSVGLVGKSGCGKSTVIG-LIQRFYD--VEQGSVRVDGMDVRELDVHWYRKHTALV 1073
VKPGT L+G SG GK+T++ L +R + G V+G R LD + R V
Sbjct: 786 VKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNG---RPLDSSFQRS-IGYV 841
Query: 1074 SQEPV-IYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETE------CGE 1126
Q+ + + +R+++ F V ++ + E++ + E E G
Sbjct: 842 QQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEK----MEYVEEVIKLLEMESYADAVVGV 897
Query: 1127 RGVQLSGGQRQRIAIARAIIRNPTILL-LDEATSALDVQS 1165
G L+ QR+R+ I ++ P +LL LDE TS LD Q+
Sbjct: 898 PGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQT 937
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 48/220 (21%), Positives = 102/220 (46%), Gaps = 17/220 (7%)
Query: 1006 DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLI--QRFYDVEQGSVRVDGMDVRELDV 1063
+ +L+ ++ + G ++G +G GKST+ +I Y + +G + G + +L+
Sbjct: 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78
Query: 1064 HWYRKHTA--LVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKD--- 1118
R H L Q P+ G N F +L + + + EF+ + +
Sbjct: 79 E-ERAHLGIFLAFQYPIEIPG--VSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLK 135
Query: 1119 --GYETECGERGVQ--LSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALD 1174
G + R V SGG+++R I + + + + +LDE S LD+ + +++ E ++
Sbjct: 136 LVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGIN 195
Query: 1175 RIMMGRTTIV-VAH--RLNTIKKLDSIALVADGRVVERGT 1211
++M +I+ + H RL K D + ++ +G++++ G
Sbjct: 196 KLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD 235
|
Length = 252 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 3e-05
Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 16/194 (8%)
Query: 380 VKAGKSVALVGASGSGKSTAI-ALVQRFYDADDGIVRIDG--VDIRRLQLKWVRREMGLV 436
VK G AL+GASG+GK+T + L +R G++ V+ R L + R +G V
Sbjct: 786 VKPGTLTALMGASGAGKTTLLNVLAER---VTTGVITGGDRLVNGRPLDSSFQRS-IGYV 841
Query: 437 SQEHALFGTS-IKDNIMFGKLDATMDEVIAAATAANAHNFIRQLP-EGY-ETKVGERGAL 493
Q+ TS +++++ F V + I+ L E Y + VG G
Sbjct: 842 QQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEG 901
Query: 494 LSGGQKQRIAIARAIIKNPVILL-LDEATSALDSESE-TLVQNALDQASLGRTTLVVAHK 551
L+ Q++R+ I ++ P +LL LDE TS LDS++ ++ + A G+ L H+
Sbjct: 902 LNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQ 961
Query: 552 LSTVRNADLIAVVD 565
S A L D
Sbjct: 962 PS----AILFEEFD 971
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 4e-05
Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 25/181 (13%)
Query: 369 DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDG-VDIRRLQLK 427
D+ +L + L ++ + V LVG +G+GKST + ++ DDG + + + + RLQ
Sbjct: 15 DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQD 74
Query: 428 WVRREMGLV---------------SQEHAL---FGTSIKDNIM--FGKLDATMDEVIAAA 467
R G V + H + T + + KL +D
Sbjct: 75 PPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQ 134
Query: 468 TAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSE 527
+ + QL + + LSGG ++ A+ RA++ NP +LLLDE T+ LD E
Sbjct: 135 LENRINEVLAQLGLDPDAALSS----LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIE 190
Query: 528 S 528
+
Sbjct: 191 T 191
|
Length = 635 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 5e-05
Identities = 51/177 (28%), Positives = 79/177 (44%), Gaps = 32/177 (18%)
Query: 371 IVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVR 430
++L + + G+ V LVG +G GKST +AL++ AD G G QL WV
Sbjct: 15 VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG----NWQLAWVN 70
Query: 431 REMGLVSQ----------------EHALFGTSIKDN-----IMFGKLDATMDEVIAAATA 469
+E + Q E L + +++ + GKLDA I + A
Sbjct: 71 QETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAA 130
Query: 470 ANAHNFIRQLPEGYETKVGERG-ALLSGGQKQRIAIARAIIKNPVILLLDEATSALD 525
+ H G+ + ER + SGG + R+ +A+A+I +LLLDE T+ LD
Sbjct: 131 SLLHGL------GFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181
|
Length = 638 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 6e-05
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 42/175 (24%)
Query: 374 KDFNLKVKAGKSVALVGASGSGKSTAIALVQRFY---DADDGIVRIDGVDIRRLQLKWVR 430
++ +L+V+AG+ + L G G+G++ L + Y A G + ++G +I L R
Sbjct: 280 RNISLEVRAGEILGLAGVVGAGRTE---LAETLYGLRPARGGRIMLNGKEINALSTA-QR 335
Query: 431 REMGLV-----SQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYET 485
GLV Q L+ LDA + + A T +I+ E
Sbjct: 336 LARGLVYLPEDRQSSGLY------------LDAPLAWNVCALTHNRRGFWIK---PAREN 380
Query: 486 KVGER--GAL-------------LSGGQKQRIAIARAIIKNPVILLLDEATSALD 525
V ER AL LSGG +Q++ IA+ + +P +L++DE T +D
Sbjct: 381 AVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVD 435
|
Length = 510 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 6e-05
Identities = 21/62 (33%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 1130 QLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAH 1187
+LSGG+ QR+ +ARA++ P +L+LDE T +DV + + + +D++ + ++V+H
Sbjct: 120 KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSH 179
Query: 1188 RL 1189
L
Sbjct: 180 DL 181
|
Length = 251 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 7e-05
Identities = 54/210 (25%), Positives = 92/210 (43%), Gaps = 48/210 (22%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
IE E++ + + +++ D + K+ G V ++G +G+GKST ++ D G +
Sbjct: 323 IEAENLSKGFGDK---LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379
Query: 415 RI-DGVDIRRLQLKWVRREMGLVSQEH-ALFGTSI--------KDNIMFGKLDATMDEVI 464
+I + V + V Q AL D I GK + +
Sbjct: 380 KIGETVKL------------AYVDQSRDALDPNKTVWEEISGGLDIIQLGKRE------V 421
Query: 465 AAATAANAHNFIRQLPEG--YETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATS 522
+ NF +G + KVG+ LSGG++ R+ +A+ + +LLLDE T+
Sbjct: 422 PSRAYVGRFNF-----KGSDQQKKVGQ----LSGGERNRVHLAKTLKSGGNVLLLDEPTN 472
Query: 523 ALDSESETLVQNALDQASL--GRTTLVVAH 550
LD ETL AL++A L +V++H
Sbjct: 473 DLD--VETL--RALEEALLEFAGCAVVISH 498
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 8e-05
Identities = 63/246 (25%), Positives = 98/246 (39%), Gaps = 51/246 (20%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRRE 432
L D +LK G + LVG +GSGKST ++ G V +G E
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-------------E 86
Query: 433 MGLVSQEHALFG--TSIKDNIMFGKL---------DATMDEVIAAATAANAHNFIRQLPE 481
+ +++ L G T I +NI F L A ++I + FI Q +
Sbjct: 87 VSVIAISAGLSGQLTGI-ENIEFKMLCMGFKRKEIKAMTPKIIEFSELGE---FIYQPVK 142
Query: 482 GYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQ--- 538
Y S G + ++ + I NP IL++DEA S D +T Q LD+
Sbjct: 143 KY-----------SSGMRAKLGFSINITVNPDILVIDEALSVGD---QTFAQKCLDKIYE 188
Query: 539 -ASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQF 596
+T V+H L VR IA ++ G L + G +D++ Y ++
Sbjct: 189 FKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLP----KYEAFLNDFKKK 244
Query: 597 SCDDQE 602
S +Q+
Sbjct: 245 SKAEQK 250
|
Length = 264 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 9e-05
Identities = 46/192 (23%), Positives = 77/192 (40%), Gaps = 23/192 (11%)
Query: 1003 SRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELD 1062
SR + V V G ++ + G +G GK+T++ ++ VE G +++DG D
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79
Query: 1063 VHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASEN-EVVEAARAANAHEFISSLKD--- 1118
+ A + P + A L EN + A + S
Sbjct: 80 ---RSRFMAYLGHLPGLKA----------DLSTLENLHFLCGLHGRRAKQMPGSALAIVG 126
Query: 1119 --GYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALD-R 1175
GYE QLS GQ++R+A+AR + + LLDE + LD++ +V +
Sbjct: 127 LAGYEDTLVR---QLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAH 183
Query: 1176 IMMGRTTIVVAH 1187
+ G +V H
Sbjct: 184 LRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 9e-05
Identities = 53/219 (24%), Positives = 96/219 (43%), Gaps = 26/219 (11%)
Query: 1003 SRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVR--- 1059
S P L +++V+P + L+G++G GKST++ + Y + GS+ G ++
Sbjct: 7 SFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS 66
Query: 1060 -----ELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFIS 1114
E + + LV Q V+ DN+ G+ V + +
Sbjct: 67 SKEALENGISMVHQELNLVLQRSVM------DNMWLGRYPTKGMFVDQDKMYRDTKAIFD 120
Query: 1115 SLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALD 1174
L + + + LS Q Q I IA+A N I+++DE TS+L +E+ V L
Sbjct: 121 EL--DIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSL---TEKEV-NHLF 174
Query: 1175 RIM-----MGRTTIVVAHRLNTIKKL-DSIALVADGRVV 1207
I+ G + ++H++ I +L D I ++ DG+ +
Sbjct: 175 TIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWI 213
|
Length = 491 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 52/207 (25%), Positives = 88/207 (42%), Gaps = 35/207 (16%)
Query: 366 SRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALV--QRFYDADDGIVRIDGVDIRR 423
S D +L+ NL+V+ G+ A++G +GSGKST A + + Y+ G V G D+
Sbjct: 10 SVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLE 69
Query: 424 LQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPE-- 481
L ++ A G I + + TA NA R
Sbjct: 70 LS-----------PEDRA--GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLD 116
Query: 482 --GYETKVGERGALL---------------SGGQKQRIAIARAIIKNPVILLLDEATSAL 524
++ + E+ ALL SGG+K+R I + + P + +LDE+ S L
Sbjct: 117 RFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGL 176
Query: 525 DSESETLVQNALDQASLG-RTTLVVAH 550
D ++ +V + ++ G R+ ++V H
Sbjct: 177 DIDALKIVADGVNSLRDGKRSFIIVTH 203
|
Length = 248 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-04
Identities = 17/35 (48%), Positives = 27/35 (77%)
Query: 1131 LSGGQRQRIAIARAIIRNPTILLLDEATSALDVQS 1165
LSGG ++ A+ RA++ NP +LLLDE T+ LD+++
Sbjct: 157 LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIET 191
|
Length = 635 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 1e-04
Identities = 50/218 (22%), Positives = 74/218 (33%), Gaps = 87/218 (39%)
Query: 380 VKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQE 439
K GK ++G +G GK+TA V+I
Sbjct: 96 PKEGKVTGILGPNGIGKTTA--------------VKI----------------------- 118
Query: 440 HALFGTSIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEG--------------- 482
L G + N G + + DEV+ N+ ++L G
Sbjct: 119 --LSGE-LIPN--LGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIP 173
Query: 483 --YETKVG-------ERGAL-------------------LSGGQKQRIAIARAIIKNPVI 514
++ KV ERG L LSGG+ QR+AIA A++++
Sbjct: 174 KVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADF 233
Query: 515 LLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKL 552
DE TS LD V + + + G+ LVV H L
Sbjct: 234 YFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDL 271
|
Length = 590 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 53/240 (22%), Positives = 98/240 (40%), Gaps = 63/240 (26%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKST---AIA------------LVQR----FYDADD- 411
+LK NL + G+ A++G +GSGKST IA L + + ++
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81
Query: 412 ---GI-------VRIDGV---DIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDA 458
GI + I GV D RL R+ GL + F I + + +D
Sbjct: 82 AHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP 141
Query: 459 TMDEVIAAATAANAHNFI-RQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLL 517
+ F+ R + EG+ SGG+K+R I + + + + +L
Sbjct: 142 S---------------FLSRNVNEGF-----------SGGEKKRNEILQMALLDSELAIL 175
Query: 518 DEATSALDSESETLVQNALDQ-ASLGRTTLVVAH--KLSTVRNADLIAVVDNGCLVEIGT 574
DE S LD ++ ++ +++ + + +++ H +L D + V+ NG +++ G
Sbjct: 176 DETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD 235
|
Length = 252 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 38/177 (21%), Positives = 80/177 (45%), Gaps = 22/177 (12%)
Query: 390 GASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQ---LKWVRREMGLVSQEHALFGTS 446
GA+G GKS+ + ++ G + +I + ++ +GL + +
Sbjct: 33 GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLE------MT 86
Query: 447 IKDNIMF-GKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIA 505
+ +N+ F ++ + + + AA H+ + E+ LS G ++ +AIA
Sbjct: 87 VFENLKFWSEIYNSAETLYAAIHYFKLHDLL-----------DEKCYSLSSGMQKIVAIA 135
Query: 506 RAIIKNPVILLLDEATSALDSESETLVQNALD-QASLGRTTLVVAHKLSTVRNADLI 561
R I + LLDE + L E+ L+ N + +A+ G L+ +H S++++A ++
Sbjct: 136 RLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192
|
Length = 195 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-04
Identities = 42/169 (24%), Positives = 70/169 (41%), Gaps = 18/169 (10%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKST----VIGLIQRFYDVEQGSVRVDGMDVRELDVH 1064
+L+ +KPG ++G+ G G ST + F+ +G + DG+ E+ H
Sbjct: 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKH 135
Query: 1065 WYRKHTALVSQEPVIYAG-NIRDNIVF-GKLDASENEV------VEAARAANAHEFISSL 1116
YR ++ V + + + + F + +N A A+ + L
Sbjct: 136 -YRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGL 194
Query: 1117 KDGYETECGE---RGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALD 1162
T+ G RGV SGG+R+R++IA A + I D AT LD
Sbjct: 195 SHTRNTKVGNDFVRGV--SGGERKRVSIAEASLGGAKIQCWDNATRGLD 241
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-04
Identities = 51/216 (23%), Positives = 83/216 (38%), Gaps = 24/216 (11%)
Query: 377 NLKVKAGKSVALVGASGSGKST-AIALVQRFY----DADDGIVRIDGVDIRRLQ----LK 427
+L + AG S A VGA+GSGKS A AL + I + +LQ +
Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE 82
Query: 428 WVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKV 487
W R ++S G + + I D D A Q G +
Sbjct: 83 WQRNNTDMLSPGEDDTGRTTAEII----QDEVKDPARCEQLAQ-------QF--GITALL 129
Query: 488 GERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLV 547
R LS G+ ++ + +A++ P +L+LDE LD S + L TLV
Sbjct: 130 DRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLV 189
Query: 548 -VAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581
V ++ + + V+ + L E G +++ +
Sbjct: 190 LVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225
|
Length = 490 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-04
Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 20/133 (15%)
Query: 1098 NEVVEAARAAN-AHEF-ISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLD 1155
+EV + AR A +F I++L D R LS G+ ++ + +A++ P +L+LD
Sbjct: 108 DEVKDPARCEQLAQQFGITALLD-------RRFKYLSTGETRKTLLCQALMSEPDLLILD 160
Query: 1156 EATSALDVQSEQVVQEALDRIMMGRTTIV-VAHRLNTIKK-LDSIALVADGRVVERGT-- 1211
E LDV S Q + E L + T+V V +R + I + ++AD + E G
Sbjct: 161 EPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGERE 220
Query: 1212 -------YAQLTH 1217
AQL H
Sbjct: 221 EILQQALVAQLAH 233
|
Length = 490 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 1131 LSGGQRQRIAIARAIIRNP--TILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAH 1187
LSGG+ QR+ +A + P T+ +LDE ++ L Q + E + ++ +G T I++ H
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147
Query: 1188 RLNTIKKLDSI 1198
L+ + D I
Sbjct: 148 NLDVLSSADWI 158
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 3e-04
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 1131 LSGGQRQRIAIARAIIR---NPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVA 1186
LSGG+ QR+ +A+ + + T+ +LDE T+ L + + E L R++ G T IV+
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882
Query: 1187 HRLNTIKKLDSI------ALVADGRVVERGTYAQLTH 1217
H L+ IK D I G +V GT ++
Sbjct: 883 HNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919
|
Length = 935 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 4e-04
Identities = 57/242 (23%), Positives = 107/242 (44%), Gaps = 28/242 (11%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAI-ALVQRFYDADDGI 413
+E ++ P + D + ++ G+ + + G G+G++ + AL + +G
Sbjct: 258 LEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGN 317
Query: 414 VRIDG--VDIRRLQLKWVRREMGLVSQEHALFGT----SIKDNIMFGKLD--ATMDEVIA 465
V I+G VDIR + +R + +V ++ G + NI L + A
Sbjct: 318 VFINGKPVDIRNPA-QAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDA 376
Query: 466 AATAANAHNFIRQLPEGYETKVGERG-----ALLSGGQKQRIAIARAIIKNPVILLLDEA 520
AA + I++L KV LSGG +Q+ +A+ ++ NP +L+LDE
Sbjct: 377 AAELQIIGSAIQRL------KVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEP 430
Query: 521 TSALDSESETLVQNALDQ-ASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDL 578
T +D ++ + ++Q A G +VV+ +L+ V +D + V+ G L D
Sbjct: 431 TRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL-----KGDF 485
Query: 579 IN 580
+N
Sbjct: 486 VN 487
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 4e-04
Identities = 58/243 (23%), Positives = 98/243 (40%), Gaps = 52/243 (21%)
Query: 344 KGLVLDEVRGEIEFEHVKFSYPSRPDSI-----------VLKDFNLKVKAGKSVALVGAS 392
+G+VL + F+ V + + P + +L++ + G AL+G S
Sbjct: 857 RGMVLPFTPLAMSFDDVNY-FVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVS 915
Query: 393 GSGKSTAIAL---------------VQRFYDADDGIVRIDGV----DIRRLQLKWVRREM 433
G+GK+T + + + F + RI G DI Q+ VR
Sbjct: 916 GAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVT-VR--- 971
Query: 434 GLVSQEHALFGTSIKDNIMFGKLDATM--DEVIAAATAANAHNFIRQLPEGYETKVGERG 491
E ++ ++ K + M DEV+ N + I LP G G
Sbjct: 972 -----ESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLP-------GVTG 1019
Query: 492 ALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNAL-DQASLGRTTLVVAH 550
LS Q++R+ IA ++ NP I+ +DE TS LD+ + +V + + GRT + H
Sbjct: 1020 --LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1077
Query: 551 KLS 553
+ S
Sbjct: 1078 QPS 1080
|
Length = 1470 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 58/250 (23%), Positives = 105/250 (42%), Gaps = 45/250 (18%)
Query: 997 VDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKS----TVIGLIQRFYDVEQGSVR 1052
++F V R SM + G GLVG+SG GKS + G+ + + V +R
Sbjct: 11 IEFKTSDGWVKAVDR-VSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMR 69
Query: 1053 VDGMDVRELDVHWYRK----HTALVSQEPVIYAGNIRDNIVFGKLDASEN---EVVEAA- 1104
D +D+ L RK + +++ QEP LD SE ++++
Sbjct: 70 FDDIDLLRLSPRERRKLVGHNVSMIFQEPQ------------SCLDPSERVGRQLMQNIP 117
Query: 1105 --------------RAANAHEFIS--SLKDGYETECGERGVQLSGGQRQRIAIARAIIRN 1148
R A E + +KD + +L+ G+ Q++ IA A+
Sbjct: 118 GWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDA-MRSFPYELTEGECQKVMIAIALANQ 176
Query: 1149 PTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKKL-DSIALVADGR 1205
P +L+ DE T+A++ ++ + L R+ T ++++H L + + D I ++ G+
Sbjct: 177 PRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQ 236
Query: 1206 VVERGTYAQL 1215
VE +L
Sbjct: 237 TVETAPSKEL 246
|
Length = 330 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 5e-04
Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 31/193 (16%)
Query: 353 GEI--EFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDA- 409
GE+ E ++ P P + D + ++ G+ + + G G+G++ LVQ + A
Sbjct: 256 GEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTE---LVQCLFGAY 312
Query: 410 ---DDGIVRIDG--VDIRRLQLKWVRREMGLVSQEHALFG----TSIKDNIMFGKLD--A 458
+G + IDG V IR Q + + + + +V ++ G + NI LD
Sbjct: 313 PGRWEGEIFIDGKPVKIRNPQ-QAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFT 371
Query: 459 TMDEVIAAATAANAHNFIRQL------PEGYETKVGERGALLSGGQKQRIAIARAIIKNP 512
+ AA I++L PE A LSGG +Q+ +A+ ++ NP
Sbjct: 372 GGSRIDDAAELKTILESIQRLKVKTASPE-------LAIARLSGGNQQKAVLAKCLLLNP 424
Query: 513 VILLLDEATSALD 525
IL+LDE T +D
Sbjct: 425 KILILDEPTRGID 437
|
Length = 506 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 6e-04
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 494 LSGGQKQRIAIARAIIKNPVILLLDEATSALDSESET-LVQNALD-QASLGRTTLVVAHK 551
LSGG QR+ IA AI P +L+ DE T+ALD + +++ L+ Q +++ H
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD 213
Query: 552 LSTV-RNADLIAVVDNGCLVEIGTHNDL 578
L+ V A I V+ G +VE G +D+
Sbjct: 214 LALVAEAAHKIIVMYAGQVVETGKAHDI 241
|
Length = 326 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 6e-04
Identities = 39/172 (22%), Positives = 75/172 (43%), Gaps = 29/172 (16%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKH 1069
+R S ++ G +G+ G G ++ ++ + + G++ + G + + + H
Sbjct: 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323
Query: 1070 T-ALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARA--------------ANAHEFIS 1114
ALV++E R ++ LD N ++ R ++ I
Sbjct: 324 GFALVTEER-------RSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVID 376
Query: 1115 SLK---DGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDV 1163
S++ G+ T+ G LSGG +Q++ I R ++ P IL+LDE T +DV
Sbjct: 377 SMRVKTPGHRTQIG----SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDV 424
|
Length = 491 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 6e-04
Identities = 60/235 (25%), Positives = 101/235 (42%), Gaps = 46/235 (19%)
Query: 377 NLKVKAGKSVALVGASGSGKS-TAIALVQRFYD-----ADDGIVRIDGVDIRRL----QL 426
++ + G+ LVG SGSGKS A A+ D AD +R D +D+ RL +
Sbjct: 27 SMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADR--MRFDDIDLLRLSPRERR 84
Query: 427 KWVRREMGLVSQE-------HALFGTSIKDNI-----------MFGKLDATMDEVIAAAT 468
K V + ++ QE G + NI FG E++
Sbjct: 85 KLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVG 144
Query: 469 AANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSES 528
+ + +R P YE L+ G+ Q++ IA A+ P +L+ DE T++++ +
Sbjct: 145 IKDHKDIMRSYP--YE---------LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTT 193
Query: 529 ETLV---QNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLI 579
+ + + L+Q S T L+++H L + AD I V+ G VE +L+
Sbjct: 194 QAQIFRLLSRLNQNS-NTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELV 247
|
Length = 330 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 7e-04
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 10/75 (13%)
Query: 1131 LSGGQRQRIAIARAIIR---NPTILLLDEATSAL---DV-QSEQVVQEALDRIMMGRTTI 1183
LSGG+ QRI +A+ + + T+ +LDE T+ L D+ + +V+Q +D+ G T +
Sbjct: 830 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDK---GNTVV 886
Query: 1184 VVAHRLNTIKKLDSI 1198
V+ H L+ IK D I
Sbjct: 887 VIEHNLDVIKTADYI 901
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 8e-04
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 1131 LSGGQRQRIAIARAIIRNPTILLLDEATSALDV 1163
LSGG +Q++AIAR ++ P +L+LDE T +DV
Sbjct: 396 LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDV 428
|
Length = 501 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 9e-04
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKST---AIA 401
IE E++ + P ++LKD + ++K G + + G SG+GKS+ A+A
Sbjct: 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALA 48
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 0.001
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 494 LSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNAL-DQASLGRTTLVVAHKL 552
LSGG+ QR+AIA A++++ + DE +S LD + + A G+ +VV H L
Sbjct: 214 LSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDL 273
Query: 553 STVRN-ADLIAVV 564
+ + +D + ++
Sbjct: 274 AVLDYLSDFVHIL 286
|
Length = 591 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 51/215 (23%), Positives = 80/215 (37%), Gaps = 78/215 (36%)
Query: 380 VKAGKSVALVGASGSGKSTAIALVQ--------RFYDADDGIVRIDGVDIRRLQLKWVRR 431
+ G+ + LVG +G GKSTA+ ++ +F D D D + L R
Sbjct: 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPD----WDEI------LDEFR- 71
Query: 432 EMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVG--- 488
G Q + T + + G + + ++ +P+ + KVG
Sbjct: 72 --GSELQN---YFTKLLE----GDVKVIVKP-----------QYVDLIPKAVKGKVGELL 111
Query: 489 ----ERGAL-------------------LSGGQKQRIAIARAIIKNPVILLLDEATSALD 525
ERG L LSGG+ QR+AIA A+ ++ DE +S LD
Sbjct: 112 KKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLD 171
Query: 526 SESETLVQNALDQASL-------GRTTLVVAHKLS 553
++ L+ A L LVV H L+
Sbjct: 172 ------IKQRLNAARLIRELAEDDNYVLVVEHDLA 200
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 55/215 (25%), Positives = 85/215 (39%), Gaps = 43/215 (20%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKH 1069
L S++ G +GLVG +G GKST+ +I G V +G +V
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG------EVSVIAIS 93
Query: 1070 TALVSQEPVIYAGNIRDNIVFGKL---------DASENEVVEAARAANAHEFISSLKDGY 1120
L Q I +NI F L A +++E + EFI Y
Sbjct: 94 AGLSGQLTGI------ENIEFKMLCMGFKRKEIKAMTPKIIEFSELG---EFIYQPVKKY 144
Query: 1121 ETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--- 1177
S G R ++ + I NP IL++DE AL V + Q+ LD+I
Sbjct: 145 -----------SSGMRAKLGFSINITVNPDILVIDE---ALSVGDQTFAQKCLDKIYEFK 190
Query: 1178 -MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERG 1210
+T V+H L +++ IA + G++ + G
Sbjct: 191 EQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYG 225
|
Length = 264 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 482 GYETKVGERGALLSGGQKQRIAIARAIIKNP--VILLLDEATSALD-SESETLVQNALDQ 538
GY T +G++ + LSGG+ QR+ +A + P + +LDE ++ L + L++
Sbjct: 77 GYLT-LGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGL 135
Query: 539 ASLGRTTLVVAHKLSTVRNADLI 561
LG T +++ H L + +AD I
Sbjct: 136 IDLGNTVILIEHNLDVLSSADWI 158
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 56/236 (23%), Positives = 102/236 (43%), Gaps = 44/236 (18%)
Query: 1014 SMEVKPGTSVGLVGKSGCGKS----TVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK- 1068
SM + G GLVG+SG GKS + G+ + + V +R D +D+ L RK
Sbjct: 27 SMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKL 86
Query: 1069 ---HTALVSQEPVIYAGNIRDNIVFGKLDASEN---EVVEAA---------------RAA 1107
+ +++ QEP LD SE ++++ R
Sbjct: 87 VGHNVSMIFQEPQ------------SCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKR 134
Query: 1108 NAHEFIS--SLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQS 1165
A E + +KD ++ +L+ G+ Q++ IA A+ P +L+ DE T++++ +
Sbjct: 135 RAIELLHRVGIKD-HKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTT 193
Query: 1166 EQVVQEALDRI--MMGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTHM 1218
+ + L R+ T ++++H L I + D I ++ G+ VE +L M
Sbjct: 194 QAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTM 249
|
Length = 330 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.002
Identities = 58/208 (27%), Positives = 87/208 (41%), Gaps = 51/208 (24%)
Query: 383 GKSVALVGASGSGKST---AIALVQRFYDADDGIVR---------------------IDG 418
G+ LVG +G+GK+T +A+ A DGI + +
Sbjct: 203 GRHYGLVGRNGTGKTTFLRYMAM-----HAIDGIPKNCQILHVEQEVVGDDTTALQCVLN 257
Query: 419 VDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMD---------------EV 463
DI R QL + E LV+Q+ L + G +D E+
Sbjct: 258 TDIERTQL--LEEEAQLVAQQRELEFETETGKGK-GANKDGVDKDAVSQRLEEIYKRLEL 314
Query: 464 IAAATA-ANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATS 522
I A TA A A + + L E +V + SGG + RIA+ARA+ P +LLLDE T+
Sbjct: 315 IDAYTAEARAASILAGLSFTPEMQV-KATKTFSGGWRMRIALARALFIEPDLLLLDEPTN 373
Query: 523 ALDSESETLVQNALDQASLGRTTLVVAH 550
LD + ++ L +T +VV+H
Sbjct: 374 HLDLHAVLWLETYL--LKWPKTFIVVSH 399
|
Length = 718 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 1131 LSGGQRQRIA-IARAIIRNPTILLLDEATSALDVQSEQVVQEALDR-IMMGRTTIV-VAH 1187
LS GQ QR+A I RA++++PT+L+LDE LD + Q+V+ +D I G T ++ V+H
Sbjct: 402 LSWGQ-QRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSH 460
|
Length = 490 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 493 LLSGGQKQRIAIARAIIKNPVILLLDEATSALD 525
LLSGG +Q++AIAR ++ P +L+LDE T +D
Sbjct: 395 LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
|
Length = 501 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.002
Identities = 33/81 (40%), Positives = 43/81 (53%), Gaps = 13/81 (16%)
Query: 494 LSGGQKQRIAIARAIIKN--PVILLLDEATSAL---DSES--ETLVQNALDQASLGRTTL 546
LSGG+ QRI +A I V+ +LDE + L D+E ETL + D LG T +
Sbjct: 482 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETL-KRLRD---LGNTVI 537
Query: 547 VVAHKLSTVRNADLIAVVDNG 567
VV H T+R AD I +D G
Sbjct: 538 VVEHDEDTIRAADHI--IDIG 556
|
Length = 935 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 63/238 (26%), Positives = 99/238 (41%), Gaps = 50/238 (21%)
Query: 377 NLKVKAGKSVALVGASGSGKS---TAIALVQR---FYDADDGIVRIDGVDIRRL----QL 426
++ + G+ LVG SGSGKS AI V + AD +R D +D+ RL +
Sbjct: 27 SMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADR--MRFDDIDLLRLSPRERR 84
Query: 427 KWVRREMGLVSQE-------HALFGTSIKDNI-----------MFGKLDATMDEVIAAAT 468
K V + ++ QE G + NI FG E++
Sbjct: 85 KLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVG 144
Query: 469 AANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSES 528
+ + +R P YE L+ G+ Q++ IA A+ P +L+ DE T+A+ E
Sbjct: 145 IKDHKDAMRSFP--YE---------LTEGECQKVMIAIALANQPRLLIADEPTNAM--EP 191
Query: 529 ETLVQ-----NALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580
T Q L+Q + T L+++H L + AD I V+ G VE +L+
Sbjct: 192 TTQAQIFRLLTRLNQNN-NTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVT 248
|
Length = 330 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 1129 VQLSGGQRQRIAIA-----RAIIRNPTILLLDEATSALDVQSEQVVQEAL-DRIMMGRTT 1182
+QLSGG+++ A+A ++ P +LDE LD + Q + EA+ + ++ G
Sbjct: 76 LQLSGGEKELSALALILALASLKPRPLY-ILDEIDRGLDPRDGQALAEAILEHLVKGAQV 134
Query: 1183 IVVAHRLNTIKKLDSIA 1199
IV+ H + D +
Sbjct: 135 IVITHLPELAELADKLI 151
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 1131 LSGGQRQRIAIARAIIRNPT--ILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAH 1187
LSGG+ QRI +A I T + +LDE + L + + E L R+ +G T +VV H
Sbjct: 138 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197
Query: 1188 RLNTIKKLDSI------ALVADGRVVERG 1210
+TI+ D + A V G +V +G
Sbjct: 198 DEDTIRAADHVIDIGPGAGVHGGEIVAQG 226
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.003
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 1067 RKHTALVSQEPVIYAGNIRDNIVFGKLD--ASENEVVEAARAANAHEFISSLKDGYETEC 1124
RK +V V NI LD + + +AA E I LK +T
Sbjct: 347 RKRDGIVPVMGVGK------NITLAALDRFTGGSRIDDAAELKTILESIQRLK--VKTAS 398
Query: 1125 GERGV-QLSGGQRQRIAIARAIIRNPTILLLDEATSALDV 1163
E + +LSGG +Q+ +A+ ++ NP IL+LDE T +DV
Sbjct: 399 PELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDV 438
|
Length = 506 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.003
Identities = 50/231 (21%), Positives = 97/231 (41%), Gaps = 38/231 (16%)
Query: 1003 SRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVR--- 1059
+ D +R S V G +G G G G++ ++ + G +R++G D+
Sbjct: 272 TSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRS 331
Query: 1060 ELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASEN--------------------E 1099
LD +K A +++ + RDN F ++N E
Sbjct: 332 PLDA--VKKGMAYITE-------SRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHE 382
Query: 1100 VVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATS 1159
V E A N E ++ E LSGG +Q++ I++ + P +++ DE T
Sbjct: 383 VDEQRTAENQRELLALKCHSVNQNITE----LSGGNQQKVLISKWLCCCPEVIIFDEPTR 438
Query: 1160 ALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKKL-DSIALVADGRVVE 1208
+DV ++ + + + ++ G+ ++V+ L I + D IA+ +GR+ +
Sbjct: 439 GIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489
|
Length = 510 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.003
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDG 412
G+I FE +Y ++KDF+ +V+ G +AL+G +G GK+T + L+ AD G
Sbjct: 316 GKIVFEMENVNY-QIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSG 374
Query: 413 IVR 415
+
Sbjct: 375 RIH 377
|
Length = 635 |
| >gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 494 LSGGQKQRIAIARAIIKN--PVILLLDEATSAL-DSESETLVQNALDQASLGRTTLVVAH 550
LSGG+ QRI +A I V+ +LDE + L +++ L++ LG T LVV H
Sbjct: 138 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197
Query: 551 KLSTVRNADLIAVVDNG 567
T+R AD + +D G
Sbjct: 198 DEDTIRAADHV--IDIG 212
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1230 | |||
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-217 Score=1966.43 Aligned_cols=1206 Identities=48% Similarity=0.790 Sum_probs=1112.4
Q ss_pred cchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHHHHHHHH
Q 000909 7 KNNIGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGLAV 86 (1230)
Q Consensus 7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (1230)
..++.++|+|..+.++.+++++++++++.++.+|++.+++++++|.+..... . ...+.+..+++++++++++.
T Consensus 12 ~~~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~------~-~~~~~~~~~~l~~~~lg~~~ 84 (1228)
T KOG0055|consen 12 TVSFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTN------K-IASSEVSKVALYFVYLGVGV 84 (1228)
T ss_pred ccchHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccc------h-hhHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999999999999999999999998864311 1 11245677888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHH
Q 000909 87 MVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFIS 166 (1230)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~ 166 (1230)
++..|++..||.+.++|+..++|+++++.+++++++|||. +.+| ++.+++++|++.|++.+++.+..+++.+.++++
T Consensus 85 ~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~-~~~g--~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~ 161 (1228)
T KOG0055|consen 85 FISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDT-NSTG--ELVTRLSDDIELIQDAIGEKVGNFIQLLATFIA 161 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeec-cccc--ceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 5557 999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHH
Q 000909 167 GLAFSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILD 246 (1230)
Q Consensus 167 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~ 246 (1230)
++++.|+..|+|+++++.+.|++.+....+.+.+.+...+.++++++..++++|+++++|||.+|+.|+++.+||.+.++
T Consensus 162 g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~ 241 (1228)
T KOG0055|consen 162 GFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALE 241 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 247 STTKLGIKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTEASIAA 325 (1230)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~ 325 (1230)
...+..++...+.++..++. ++.+..+++.+|||+.++..+..+.|++++++.+++.....+++..+.+..+..+.+++
T Consensus 242 ~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa 321 (1228)
T KOG0055|consen 242 NALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAA 321 (1228)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccch
Confidence 99999999999999999888 88889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCCCCCCcccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 000909 326 SRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 326 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
.+|++.++..|+.+.....+......+|+|+|+||+|+||.+++.++|+|+||+|++||++||||||||||||++++|.|
T Consensus 322 ~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~R 401 (1228)
T KOG0055|consen 322 YRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLAR 401 (1228)
T ss_pred HHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 99999999988876554233344567899999999999999998899999999999999999999999999999999999
Q ss_pred CCCCCCceEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccc
Q 000909 406 FYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYET 485 (1230)
Q Consensus 406 ~~~~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t 485 (1230)
+|+|++|+|++||.|+++++.+|+|++||+|+|||.||++||+|||.||+|+++.+++.++|+.+++++||.++|+||+|
T Consensus 402 fydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T 481 (1228)
T KOG0055|consen 402 FYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDT 481 (1228)
T ss_pred hcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEe
Q 000909 486 KVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVD 565 (1230)
Q Consensus 486 ~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~ 565 (1230)
.+||+|.+|||||||||||||||++||+||||||||||||+++|+.++++|++..+|+|+|+|||||+++++||+|+||+
T Consensus 482 ~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~ 561 (1228)
T KOG0055|consen 482 LVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVME 561 (1228)
T ss_pred cccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecChhHHHhhcCcHHHHHHHHhhcccCCCCCCCcccccc---cccccCCC--CccccCCCCcccCC---CCCCC
Q 000909 566 NGCLVEIGTHNDLINRIDGHYAKMAKLQRQFSCDDQETIPETHVS---SVTRSSGG--RLSAARSSPAIFAS---PLPVI 637 (1230)
Q Consensus 566 ~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~---~~~~~ 637 (1230)
+|+|+|.|+|+||++. .|.|.++++.|.....++.++.++.... ...+.+.. ...+.. ....... +.+..
T Consensus 562 ~G~IvE~G~h~ELi~~-~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~-~~~~~~~~~~~~e~~ 639 (1228)
T KOG0055|consen 562 EGKIVEQGTHDELIAL-GGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGS-NRSNLLSVKPEGEDP 639 (1228)
T ss_pred CCEEEEecCHHHHHhc-cchHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCc-ccccccccccccccc
Confidence 9999999999999997 5999999999876553221100000000 00000000 000000 0000000 00000
Q ss_pred CCCCCCCCCchHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHH
Q 000909 638 DSPQPVTYLPPSFFRLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLI 717 (1230)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1230)
+........+.++++++++++|+|+.+++|.+++.+.|..+|.+++.++.++..+...+++.+......|.++|++++++
T Consensus 640 ~~~~~~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~ 719 (1228)
T KOG0055|consen 640 EEPVSEEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIV 719 (1228)
T ss_pred ccccccccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence 00001122566799999999999999999999999999999999999999999998776666666666699999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 718 SLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAI 797 (1230)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~ 797 (1230)
..+++++++|+|..++++++.|+|.++|+++++++++|||+++|+ |.|.+|+.+|...++..++..+..+++++.+++.
T Consensus 720 ~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~ 798 (1228)
T KOG0055|consen 720 SGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVII 798 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHH
Q 000909 798 AMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQE 877 (1230)
Q Consensus 798 ~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~ 877 (1230)
+++++|+++|+++++++++.|++++..+.+.+++.....+.++...++...+.|++++++||++|+.|+++.+.|.+.++
T Consensus 799 ~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~ 878 (1228)
T KOG0055|consen 799 GIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELE 878 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 878 EPRKQARKKSWLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAV 957 (1230)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 957 (1230)
.+.+...+++++.++.+++++.+.++.+++.+|+|++++.+|.+++.+++.+++.+.+....+++...+.+++.++..|+
T Consensus 879 ~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa 958 (1228)
T KOG0055|consen 879 KPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAA 958 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCCCCCCCCCCCCCCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHH
Q 000909 958 ASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVI 1037 (1230)
Q Consensus 958 ~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~ 1037 (1230)
.++++++|++|..+... +.+...++.+|+|+|+||+|+||+||+.+||+|+||+|++||+|||||||||||||++
T Consensus 959 ~~iF~i~dr~~~i~~~~-----~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI 1033 (1228)
T KOG0055|consen 959 GSIFEILDRKPTIDPDS-----TSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVI 1033 (1228)
T ss_pred HHHHHHhcCCCCCCCCC-----CCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHH
Confidence 99999999998765431 1223345678999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccCCCCeEEECCeecCCCChHHHhhcceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhcc
Q 000909 1038 GLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLK 1117 (1230)
Q Consensus 1038 ~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp 1117 (1230)
.||.|||||++|.|.|||+||+++++++||++|++|+|||.||++||||||.||..+++++|+.+|++.|++|+||.+||
T Consensus 1034 ~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP 1113 (1228)
T KOG0055|consen 1034 SLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLP 1113 (1228)
T ss_pred HHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999965689999999999999999999999
Q ss_pred ccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCE
Q 000909 1118 DGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDS 1197 (1230)
Q Consensus 1118 ~gldt~vge~G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~ 1197 (1230)
+||||.|||+|.+||||||||||||||++|||+||||||||||||.++|+.||++|++...|||+|+|||||+||++||.
T Consensus 1114 ~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~ 1193 (1228)
T KOG0055|consen 1114 QGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADV 1193 (1228)
T ss_pred CcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcEEEEecCHhHHhhcccccHHHhhhcC
Q 000909 1198 IALVADGRVVERGTYAQLTHMRGAFFNLATLQS 1230 (1230)
Q Consensus 1198 I~vl~~G~Ive~Gt~~eLl~~~g~y~~l~~~q~ 1230 (1230)
|+|+++|+|+|+|||+||++++|.|++|++.|+
T Consensus 1194 I~Vi~~G~VvE~GtH~~L~~~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1194 IAVLKNGKVVEQGTHDELLAKRGIYFRLVQLQS 1226 (1228)
T ss_pred EEEEECCEEEecccHHHHHhCCCchHHHhhhcc
Confidence 999999999999999999999999999999884
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-174 Score=1720.10 Aligned_cols=1203 Identities=28% Similarity=0.472 Sum_probs=1019.3
Q ss_pred ccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHHHHHHH
Q 000909 6 NKNNIGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGLA 85 (1230)
Q Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (1230)
++.++..+|+|..+.++.+++++++++++.++..|+++++++.++|.+... ..+..+++++++++++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~-------------~~~~~~~~~~~~~~i~ 109 (1466)
T PTZ00265 43 QKIPFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLG-------------ENVNDIIFSLVLIGIF 109 (1466)
T ss_pred ccccHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------chHHHHHHHHHHHHHH
Confidence 445789999999988888889999999999999999999999999976321 1122334556667778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHH
Q 000909 86 VMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFI 165 (1230)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i 165 (1230)
.+++.+++.+++.+.++++..++|.++|++++++|++|||+ .++| ++.+++++|++.+++.+...+..++..+++++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~-~~~~--~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i 186 (1466)
T PTZ00265 110 QFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDN-NPGS--KLTSDLDFYLEQVNAGIGTKFITIFTYASAFL 186 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC-CCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999997 4545 99999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHH
Q 000909 166 SGLAFSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAIL 245 (1230)
Q Consensus 166 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~ 245 (1230)
++++++++++|+|++++++++|+++++..++.+++++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..
T Consensus 187 ~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~ 266 (1466)
T PTZ00265 187 GLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSE 266 (1466)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888888888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc--------CccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 246 DSTTKLGIKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFK--------GETGGKIYAAGISFILSGLSLGSALPELK 316 (1230)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~--------~~~~g~~~~~~~~~~~~~~~l~~~~~~~~ 316 (1230)
+...+...+.....++..++. ++.++.+++++|+|++++..| .+++|.+++++.+.+.....+..+.+.+.
T Consensus 267 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~ 346 (1466)
T PTZ00265 267 KLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNIT 346 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888888888777666 666777889999999999875 57889998887777766667777888899
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCCCcccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcH
Q 000909 317 YFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGK 396 (1230)
Q Consensus 317 ~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGK 396 (1230)
.++.+..+++|++++++.+++.+... .+...+. .+.|+++||+|+|+++++.++|+|+||+|++||++||||||||||
T Consensus 347 ~~~~a~~a~~ri~~ii~~~~~~~~~~-~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGK 424 (1466)
T PTZ00265 347 EYMKSLEATNSLYEIINRKPLVENND-DGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGK 424 (1466)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCC-CCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCH
Confidence 99999999999999999877644211 1111122 247999999999986544579999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCceEEE-CCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCC-------------------
Q 000909 397 STAIALVQRFYDADDGIVRI-DGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKL------------------- 456 (1230)
Q Consensus 397 STl~~ll~~~~~~~~G~i~~-~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~------------------- 456 (1230)
|||+++|+|+|+|++|+|++ ||.++++++.+++|++||||+|+|.||++||+|||.+|.+
T Consensus 425 STLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~ 504 (1466)
T PTZ00265 425 STILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDS 504 (1466)
T ss_pred HHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccc
Confidence 99999999999999999999 5799999999999999999999999999999999999742
Q ss_pred --------------------------------------CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhH
Q 000909 457 --------------------------------------DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQ 498 (1230)
Q Consensus 457 --------------------------------------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 498 (1230)
+.++++++++|+.+++++++.++|+|++|.+|++|.+|||||
T Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQ 584 (1466)
T PTZ00265 505 QENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQ 584 (1466)
T ss_pred cccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHH
Confidence 235678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhccCEEEEEeCC---------
Q 000909 499 KQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRNADLIAVVDNG--------- 567 (1230)
Q Consensus 499 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~~l~~G--------- 567 (1230)
||||+||||++++|+|||||||||+||+++++.+++.|++.. +|+|+|+||||+++++.||+|++|++|
T Consensus 585 kQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~ 664 (1466)
T PTZ00265 585 KQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVD 664 (1466)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccc
Confidence 999999999999999999999999999999999999999875 489999999999999999999999986
Q ss_pred --------------------------------------eEEEecChhHHHhhcCcHHHHHHHHhhcccCCCC-C--CCcc
Q 000909 568 --------------------------------------CLVEIGTHNDLINRIDGHYAKMAKLQRQFSCDDQ-E--TIPE 606 (1230)
Q Consensus 568 --------------------------------------~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~ 606 (1230)
+|+|+|+|+||++..+|.|+.+...|........ + ....
T Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~ 744 (1466)
T PTZ00265 665 IIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDS 744 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccccc
Confidence 5999999999998458999999987754321110 0 0000
Q ss_pred ---ccc-c-cc-cc---cCCCCc-cccCCCCcccCCCC--CC-CCC-CC-C----------CCCCchHHHHHHhhhhhhh
Q 000909 607 ---THV-S-SV-TR---SSGGRL-SAARSSPAIFASPL--PV-IDS-PQ-P----------VTYLPPSFFRLLSLNAPEW 661 (1230)
Q Consensus 607 ---~~~-~-~~-~~---~~~~~~-~~~~~~~~~~~~~~--~~-~~~-~~-~----------~~~~~~~~~~~~~~~~~~~ 661 (1230)
... . .. .. ...... .............. +. .+. .. + ....+..+.++++..++++
T Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 824 (1466)
T PTZ00265 745 DMKSSAYKDSERGYDPDEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYK 824 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHH
Confidence 000 0 00 00 000000 00000000000000 00 000 00 0 0111223455566666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 662 KQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNFAYMGGRLTKRIR 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 741 (1230)
+.++++++++++.+.+.|.++++++.+++.++.. .........|.+++++++++..++.+++.|++.++++++..++|
T Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR 902 (1466)
T PTZ00265 825 KDVTIIALSILVAGGLYPVFALLYAKYVSTLFDF--ANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMK 902 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888889999999999999999999876532 22233455678888888888999999999999999999999999
Q ss_pred HHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 742 LRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTI 821 (1230)
Q Consensus 742 ~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~ 821 (1230)
.++|++++++|++|||++++++|++++|+++|++.++..+...+..++..++.++++++++++++|.+++++++++|++.
T Consensus 903 ~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~ 982 (1466)
T PTZ00265 903 RRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFM 982 (1466)
T ss_pred HHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997779999999999999999999999999999999999999999999999999888766555544
Q ss_pred HHHHHHHHHHhHHHHH---------------HHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHH
Q 000909 822 LCFYTRKVLLSSVSTN---------------FVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKK 886 (1230)
Q Consensus 822 ~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~ 886 (1230)
..+..+.+.......+ ..+..++....+.|++.|+++||+|+.|+++.++|++..+...+...+.
T Consensus 983 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~ 1062 (1466)
T PTZ00265 983 RVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRK 1062 (1466)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4333322221111100 1223455678899999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000909 887 SWLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDR 966 (1230)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~ 966 (1230)
.+..+...++.+++.++..++++|+|++++..|.+++|.+++++.++.+...++..+...++++.++..+++|++++++.
T Consensus 1063 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~ 1142 (1466)
T PTZ00265 1063 TLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIR 1142 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 88999999999999999999999999999999999999999988777776677888999999999999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC
Q 000909 967 QSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV 1046 (1230)
Q Consensus 967 ~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p 1046 (1230)
+++.+..... +.....++...|.|+|+||+|+||++++.+||+|+||+|+|||+|||||+||||||||+++|+|||+|
T Consensus 1143 ~~~~~~~~~~--~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1143 KSNIDVRDNG--GIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred CCcCCCCCCc--ccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 6644321100 00000112346889999999999977666899999999999999999999999999999999999999
Q ss_pred ------------------------------------------------------CCCeEEECCeecCCCChHHHhhcceE
Q 000909 1047 ------------------------------------------------------EQGSVRVDGMDVRELDVHWYRKHTAL 1072 (1230)
Q Consensus 1047 ------------------------------------------------------~~G~I~idG~di~~i~~~~lR~~i~~ 1072 (1230)
++|+|+|||+||+++++++||++|+|
T Consensus 1221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~ 1300 (1466)
T PTZ00265 1221 KNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSI 1300 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccE
Confidence 69999999999999999999999999
Q ss_pred EcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 000909 1073 VSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTIL 1152 (1230)
Q Consensus 1073 VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p~IL 1152 (1230)
|||||+||+|||||||.||+|+++++++++|++.|++++||.+||+||||.|||+|.+|||||||||||||||+|+|+||
T Consensus 1301 V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~IL 1380 (1466)
T PTZ00265 1301 VSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKIL 1380 (1466)
T ss_pred eCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeC----cEEE-EecCHhHHhh-cccccHH
Q 000909 1153 LLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKKLDSIALVAD----GRVV-ERGTYAQLTH-MRGAFFN 1224 (1230)
Q Consensus 1153 lLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~D~I~vl~~----G~Iv-e~Gt~~eLl~-~~g~y~~ 1224 (1230)
|||||||+||++||+.|+++|++.. +++|+|+||||++++++||+|+||++ |+++ |.|+|+||++ ++|.|++
T Consensus 1381 LLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~ 1460 (1466)
T PTZ00265 1381 LLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKK 1460 (1466)
T ss_pred EEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHH
Confidence 9999999999999999999999874 69999999999999999999999999 9954 9999999998 5999999
Q ss_pred HhhhcC
Q 000909 1225 LATLQS 1230 (1230)
Q Consensus 1225 l~~~q~ 1230 (1230)
||+.|+
T Consensus 1461 l~~~~~ 1466 (1466)
T PTZ00265 1461 YVKLAK 1466 (1466)
T ss_pred HHhhcC
Confidence 999885
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-169 Score=1585.47 Aligned_cols=1093 Identities=23% Similarity=0.289 Sum_probs=857.9
Q ss_pred HHHHHHHHHHHHHHH----HHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 000909 98 SKTSERQVVKIRYKY----LEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTY 173 (1230)
Q Consensus 98 ~~~~~~~~~~lr~~~----~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~ 173 (1230)
.+...+.+.++|..+ |+|.++++...-.+ .+.| +++|.+++|++++.++... +..+....+.+++++.+++.
T Consensus 263 ~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~-~t~G--~ivNlms~D~~ri~~~~~~-~h~~w~~Plqi~~~l~lLy~ 338 (1381)
T KOG0054|consen 263 FFVSFRVGMRLRSALISAIYRKALRLSNSARGE-TTVG--EIVNLMSVDAQRLSDAACF-LHLLWSAPLQIILALYLLYG 338 (1381)
T ss_pred HHHHHhhhhhHHHHHHHHHHHhhhcCchhhccC-CCcc--hhhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 445666677777665 66666666554332 3455 9999999999999998653 34444444555555544444
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 000909 174 FSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLGI 253 (1230)
Q Consensus 174 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 253 (1230)
.--.-+++.++++.+++++..+++++.++.+++.++..+++...++|.++|||+||+|+||+.|.++.++.++++.+...
T Consensus 339 ~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lr 418 (1381)
T KOG0054|consen 339 LLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLR 418 (1381)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33334667777777888889999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000909 254 KQGTAKGLAVGSTGLSFAIWAFLAWYGSHL-VMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTEASIAASRIFDRI 332 (1230)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l 332 (1230)
|.....++.......... .+.+..++.+. ...+.+++..+|+.+.++..+..|+..++..+..+.++.+|.+|+.+++
T Consensus 419 k~~~~~~~~~~~~~~~p~-lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl 497 (1381)
T KOG0054|consen 419 KSAYLSALNSFLNFFSPV-LVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFL 497 (1381)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888766554422211 22223344444 4456678889999999999999999998889999999999999999999
Q ss_pred ccCCCCCCCCCCCcccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 000909 333 DRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDG 412 (1230)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G 412 (1230)
..++. +.........++.+..|+++|.+|+|++....+.|+||||+|++|+.+||||+.|||||+|+.+|+|+++..+|
T Consensus 498 ~~~e~-~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG 576 (1381)
T KOG0054|consen 498 LSEEL-DPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSG 576 (1381)
T ss_pred cCccc-CccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccc
Confidence 76432 22111111223344579999999999864445699999999999999999999999999999999999999999
Q ss_pred eEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCC
Q 000909 413 IVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGA 492 (1230)
Q Consensus 413 ~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 492 (1230)
++.++| .++||||+||+|++||||||.||.| .+.++..++.+.|.+.++++.||.|+.|.+||+|.
T Consensus 577 ~v~v~g-------------siaYv~Q~pWI~ngTvreNILFG~~-~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi 642 (1381)
T KOG0054|consen 577 SVAVNG-------------SVAYVPQQPWIQNGTVRENILFGSP-YDEERYDKVIKACALKKDLEILPFGDLTEIGERGI 642 (1381)
T ss_pred eEEEcC-------------eEEEeccccHhhCCcHHHhhhcCcc-ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCcc
Confidence 999998 5999999999999999999999986 44566677777788889999999999999999999
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH-HHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEeCCeEEE
Q 000909 493 LLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESET-LVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVE 571 (1230)
Q Consensus 493 ~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~-~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~ 571 (1230)
+|||||||||+||||+|+|+||++||||+||+|+++.+ .+.++++...++||+|+|||.++.+++||+|++|+||+|++
T Consensus 643 nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~ 722 (1381)
T KOG0054|consen 643 NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVE 722 (1381)
T ss_pred CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEec
Confidence 99999999999999999999999999999999999665 55777877788999999999999999999999999999999
Q ss_pred ecChhHHHhhcCcHHHHHHHHhhcccCCCCCCCcccccccccccCCCCccccCCCCcccCCCCCCCCC---CCCCCCCch
Q 000909 572 IGTHNDLINRIDGHYAKMAKLQRQFSCDDQETIPETHVSSVTRSSGGRLSAARSSPAIFASPLPVIDS---PQPVTYLPP 648 (1230)
Q Consensus 572 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 648 (1230)
.|+++||++. ...+.++..........+.+...............+.........+.........+. .+.......
T Consensus 723 ~Gty~el~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v 801 (1381)
T KOG0054|consen 723 SGTYEELLKS-GGDFAELAHEEESEQEEEASEKDLESGESSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKV 801 (1381)
T ss_pred ccCHHHHHhc-chhHHHHhhccchhhccccccccccccccccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEe
Confidence 9999999974 777777633222211111000000000000000000000000000000000000000 001123334
Q ss_pred HHHHHHhhhhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHh--hhHHHHHHHHHHHHHHHHHHHHH
Q 000909 649 SFFRLLSLNAPEWKQGLI--GSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQ--SRIRTYSLIFCSLSLISLAFNLL 724 (1230)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 724 (1230)
.+..+..|.+..+..... .+++............++++.|.+ ....... .....|..+|.+++++..++..+
T Consensus 802 ~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~----~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~ 877 (1381)
T KOG0054|consen 802 SWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTD----DGEDNGTTTVSTSFYLGVYALLGVASSLLTLL 877 (1381)
T ss_pred eHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CcccccccCCCcchHHHHHHHHHHHHHHHHHH
Confidence 455555554442222211 122222222222333333333332 1111111 34667899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 725 QHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLV 804 (1230)
Q Consensus 725 ~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~ 804 (1230)
+.+.+...+.+++++||++++++++++||+||| .||+|+|+|||++|++.+|..+|..+..++..++.+++.+++..+
T Consensus 878 rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFd--tTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~ 955 (1381)
T KOG0054|consen 878 RSFLFAKGGLKASRKLHDKLLNSILRAPMSFFD--TTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISY 955 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcC--CCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999999999999999 899999999999999999999999999999999999888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHH
Q 000909 805 VAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNR----STQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPR 880 (1230)
Q Consensus 805 ~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~ 880 (1230)
..|+ ++++++|+.+++++++.+|.+. +++.++..+- ..+|+.|++.|+.|||||+.+++|.+++++..|.+.
T Consensus 956 ~~P~---fli~~~pl~v~~~~~~~~Y~~t-sReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~ 1031 (1381)
T KOG0054|consen 956 VTPW---FLIAIIPLGVIYYFVQRYYLAT-SRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENS 1031 (1381)
T ss_pred HhHH---HHHHHHHHHHHHHHHHHHHHHH-hHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhH
Confidence 6664 5667778888888877777765 7888887654 369999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 881 KQARKKSWLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASV 960 (1230)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri 960 (1230)
+..... .....|+++..-+...+..+...+.+.+...+..++|.++.++.+.+.....+..+++...++++.++|+||+
T Consensus 1032 ~~~f~~-~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv 1110 (1381)
T KOG0054|consen 1032 RAFFLS-ISANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERV 1110 (1381)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHH
Confidence 765432 2222333332222111111111111222222227799999999999999999999999999999999999999
Q ss_pred HHHHccCCCCCCCCCCCCCCCCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHH
Q 000909 961 FKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLI 1040 (1230)
Q Consensus 961 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL 1040 (1230)
.++.+.++|.|... ++..+++.||.+|+|+|+|++.+|.+. .++|||||||+|+||||||||||||||||||+++|
T Consensus 1111 ~eY~~~~~E~p~~~---~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aL 1186 (1381)
T KOG0054|consen 1111 LEYTDIPSEAPLEI---EESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILAL 1186 (1381)
T ss_pred HHHhcCCCCCCCCC---cCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHH
Confidence 99999887733221 122256789999999999999999643 35799999999999999999999999999999999
Q ss_pred hccccCCCCeEEECCeecCCCChHHHhhcceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccc
Q 000909 1041 QRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGY 1120 (1230)
Q Consensus 1041 ~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gl 1120 (1230)
+|+.+|.+|+|.|||+||+++++++||+++++|||||+||+||+|+||++.+ +++|++||+||++|++.++|+++|+||
T Consensus 1187 FRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~-e~sD~~IW~ALe~~~Lk~~v~~~p~~L 1265 (1381)
T KOG0054|consen 1187 FRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFD-EYSDDEIWEALERCQLKDVVSSLPGGL 1265 (1381)
T ss_pred HHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCccc-ccCHHHHHHHHHHhChHHHHhhCCcCC
Confidence 9999999999999999999999999999999999999999999999998653 799999999999999999999999999
Q ss_pred cccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEE
Q 000909 1121 ETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIAL 1200 (1230)
Q Consensus 1121 dt~vge~G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~v 1200 (1230)
|++|.|+|.|||.||||++||||||||++|||+||||||++|++||..||++|++.|++||||+||||++||.+||||+|
T Consensus 1266 d~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlV 1345 (1381)
T KOG0054|consen 1266 DSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLV 1345 (1381)
T ss_pred CceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcEEEEecCHhHHhhc-ccccHHHhh
Q 000909 1201 VADGRVVERGTYAQLTHM-RGAFFNLAT 1227 (1230)
Q Consensus 1201 l~~G~Ive~Gt~~eLl~~-~g~y~~l~~ 1227 (1230)
||+|+|+|+|+|++|+++ ++.|++++.
T Consensus 1346 ld~G~v~EfdsP~~Ll~~~~S~f~~~l~ 1373 (1381)
T KOG0054|consen 1346 LDAGRVVEFDSPAELLSDKDSLFSSLLK 1373 (1381)
T ss_pred eeCCeEeecCChHHHHhCCcchHHHHHH
Confidence 999999999999999988 556655654
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-159 Score=1587.58 Aligned_cols=1090 Identities=21% Similarity=0.242 Sum_probs=832.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 000909 98 SKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWR 177 (1230)
Q Consensus 98 ~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 177 (1230)
.+.+.++...++..+|+|+++++..++++ .++| +++|++++|++.+++++. .+..++..++.+++++++++..-..
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~-~~~G--~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~ 441 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKK-FTSG--KITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGV 441 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCC-CCHH--HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777788889999999999999875 4445 999999999999999874 4555555555555555544432222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 178 LSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLGIKQGT 257 (1230)
Q Consensus 178 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 257 (1230)
.+++.++++++++++..++.+++++..++.++..+++.+.+.|.++|+++||+|+||+.+.+++++.++++.+...+...
T Consensus 442 ~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~ 521 (1622)
T PLN03130 442 ASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQL 521 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333444555566778888999999999999999999999999999999999999999999999888877766665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 000909 258 AKGLAVGSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTEASIAASRIFDRIDRVPE 337 (1230)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 337 (1230)
...+...+... ....+.++++|++.+..|.+++|.+++++.++..+..|+..+...+..+.++.++++|+.++++.++.
T Consensus 522 ~~~~~~~~~~~-~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~ 600 (1622)
T PLN03130 522 LSAFNSFILNS-IPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEER 600 (1622)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 55543332211 11234456788888889999999999999998888999998888899999999999999999975433
Q ss_pred CCCCCCCCcccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC-ceEEE
Q 000909 338 IDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADD-GIVRI 416 (1230)
Q Consensus 338 ~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~-G~i~~ 416 (1230)
.+... . ......+.|+++|++|+|++++++++|+|+||+|++||++|||||||||||||+++|+|+++|++ |+|.+
T Consensus 601 ~~~~~-~--~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l 677 (1622)
T PLN03130 601 VLLPN-P--PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI 677 (1622)
T ss_pred ccccC-C--cccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE
Confidence 21111 0 01112347999999999985444679999999999999999999999999999999999999999 99986
Q ss_pred CCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCCh
Q 000909 417 DGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSG 496 (1230)
Q Consensus 417 ~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 496 (1230)
|++|+||+|+||+|++||||||.||.+ .+++++.++++.|+++++++.||+|++|.+||+|.+|||
T Consensus 678 -------------~~~Iayv~Q~p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSG 743 (1622)
T PLN03130 678 -------------RGTVAYVPQVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISG 743 (1622)
T ss_pred -------------cCeEEEEcCccccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCH
Confidence 448999999999999999999999986 468889999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhcCCCeEEEEecCchhhhccCEEEEEeCCeEEEecCh
Q 000909 497 GQKQRIAIARAIIKNPVILLLDEATSALDSESETLV-QNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTH 575 (1230)
Q Consensus 497 Gqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i-~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~ 575 (1230)
||||||+||||+|++|+|+||||||||||+++++.+ .++++...+++|+|+||||++.++.||+|++|++|+++++|+|
T Consensus 744 GQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~ 823 (1622)
T PLN03130 744 GQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTY 823 (1622)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCH
Confidence 999999999999999999999999999999998876 4567766689999999999999999999999999999999999
Q ss_pred hHHHhhcCcHHHHHHHHhhcccCCCCCCCccc-ccccccccCC---CCccccCCCCcccCCCCCCCCCCCCCCCCchHHH
Q 000909 576 NDLINRIDGHYAKMAKLQRQFSCDDQETIPET-HVSSVTRSSG---GRLSAARSSPAIFASPLPVIDSPQPVTYLPPSFF 651 (1230)
Q Consensus 576 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (1230)
+|++++ ++.|.++...+....+...+...+. .......... .......................+........+.
T Consensus 824 ~eL~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~ 902 (1622)
T PLN03130 824 EELSNN-GPLFQKLMENAGKMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERETGVVSWK 902 (1622)
T ss_pred HHHHhc-chhHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHhcCccCHH
Confidence 999984 7888888765432111110000000 0000000000 0000000000000000000000001112222344
Q ss_pred HHHhhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 652 RLLSLNAPEW--KQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNF 729 (1230)
Q Consensus 652 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1230)
.+.+|.+... +...+.+++............++++.|.+... ........|.++|++++++..++.+++.+++
T Consensus 903 vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~-----~~~~~~~~~~~i~~~l~~~~~i~~~~~~~~~ 977 (1622)
T PLN03130 903 VLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGT-----PKTHGPLFYNLIYALLSFGQVLVTLLNSYWL 977 (1622)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433311 11112222222222222222333333332111 0112234577788888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 730 AYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKL 809 (1230)
Q Consensus 730 ~~~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 809 (1230)
.+.+.+++.++|.+++++++++|++||| ++++|+++|||++|++.++..++..+..++..++.+++.++++++++|..
T Consensus 978 ~~~~~~~~~~L~~~l~~~ll~~p~~ffd--~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~ 1055 (1622)
T PLN03130 978 IMSSLYAAKRLHDAMLGSILRAPMSFFH--TNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTIS 1055 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhc--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 78999999999999999999999999999998888888888777777643
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHH
Q 000909 810 AVVMIAVQPLTILCFYTRKVLLSSVSTNFVKA----QNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARK 885 (1230)
Q Consensus 810 ~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~ 885 (1230)
. ++++|+.+++++.+.++. +..++.++. .+...+++.|++.|++|||+|+.++++.+.+.+..+...+....
T Consensus 1056 ~---~~~~pl~~~~~~~~~~~~-~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~ 1131 (1622)
T PLN03130 1056 L---WAIMPLLVLFYGAYLYYQ-STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLV 1131 (1622)
T ss_pred H---HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 333444443333333332 223333333 34457889999999999999999998888877777665544332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 886 KSWLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQ-IS-----AGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVAS 959 (1230)
Q Consensus 886 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~-~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r 959 (1230)
.... ..+.++. ...+..+++++.+...+..+. .. .+.++.++.+.......+..+...+.++++.+.+++|
T Consensus 1132 ~~~~-~~wl~~~--l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveR 1208 (1622)
T PLN03130 1132 NMSS-NRWLAIR--LETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVER 1208 (1622)
T ss_pred HHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 1111111 111111222222333343332 11 3455555666677777888888889999999999999
Q ss_pred HHHHHccCCCCCCCCCCCCCCCCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHH
Q 000909 960 VFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGL 1039 (1230)
Q Consensus 960 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~l 1039 (1230)
+.++++.+++.+.... +..+++.||..|.|+|+||+|+|++. .++||+|+||+|+|||+||||||||||||||+++
T Consensus 1209 i~e~~~~~~E~~~~~~---~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~l 1284 (1622)
T PLN03130 1209 VGTYIDLPSEAPLVIE---NNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNA 1284 (1622)
T ss_pred HHHHhCCCCccccccc---CCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 9999987766432110 11123346678999999999999643 3479999999999999999999999999999999
Q ss_pred HhccccCCCCeEEECCeecCCCChHHHhhcceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhcccc
Q 000909 1040 IQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDG 1119 (1230)
Q Consensus 1040 L~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~g 1119 (1230)
|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+|||||||++++ +++|+|+|+|++.++++++|+++|+|
T Consensus 1285 L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei~~Al~~a~l~~~I~~lp~G 1363 (1622)
T PLN03130 1285 LFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLWESLERAHLKDVIRRNSLG 1363 (1622)
T ss_pred HhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHHHHHHHHcCcHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999886 68999999999999999999999999
Q ss_pred ccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEE
Q 000909 1120 YETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIA 1199 (1230)
Q Consensus 1120 ldt~vge~G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~ 1199 (1230)
|||+|||+|.+|||||||||||||||+|+|+|||||||||+||.+||+.||++|++.+++||+|+||||++|+++||||+
T Consensus 1364 Ldt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIl 1443 (1622)
T PLN03130 1364 LDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRIL 1443 (1622)
T ss_pred cCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCcEEEEecCHhHHhhc-ccccHHHhhhc
Q 000909 1200 LVADGRVVERGTYAQLTHM-RGAFFNLATLQ 1229 (1230)
Q Consensus 1200 vl~~G~Ive~Gt~~eLl~~-~g~y~~l~~~q 1229 (1230)
||++|+|+|+|+|+||+++ +|.|++|++.+
T Consensus 1444 VLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~ 1474 (1622)
T PLN03130 1444 VLDAGRVVEFDTPENLLSNEGSAFSKMVQST 1474 (1622)
T ss_pred EEECCEEEEeCCHHHHHhCCCCHHHHHHHHc
Confidence 9999999999999999998 69999999764
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-158 Score=1579.83 Aligned_cols=1150 Identities=20% Similarity=0.234 Sum_probs=851.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 27 LGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVV 106 (1230)
Q Consensus 27 ~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 106 (1230)
++.++.++..++....|++++.+++.+... +.. .....++.++++..++..++.....+...+.+.++..
T Consensus 305 ~~~~~~i~~~~~~~~~P~ll~~li~~~~~~-------~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~ 374 (1495)
T PLN03232 305 LGGIFKIGHDLSQFVGPVILSHLLQSMQEG-------DPA---WVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRS 374 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------Ccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555557889999876422 110 0011111111111122222211112223567777778
Q ss_pred HHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--
Q 000909 107 KIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFP-- 184 (1230)
Q Consensus 107 ~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~~~-- 184 (1230)
.++..+|+|+++++..++++ .++| +++|++++|++.+++.+ ..+..++..++.+++++++++ +.+++++++
T Consensus 375 ~l~~~i~~k~l~l~~~~~~~-~~~G--~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~---~~lg~~~l~~~ 447 (1495)
T PLN03232 375 TLVAAIFHKSLRLTHEARKN-FASG--KVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLY---QQLGVASLFGS 447 (1495)
T ss_pred HHHHHHHHHHhcCChhhcCC-CCHH--HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHH
Confidence 88889999999999999886 4445 99999999999999986 345555555544444443332 223333222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 185 -TLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLGIKQGTAKGLAV 263 (1230)
Q Consensus 185 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (1230)
++++++++..++.++..+..++.++..+++.+.+.|.++|+++||+|+||+.+.+++++.++++.+...+.....++..
T Consensus 448 ~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~ 527 (1495)
T PLN03232 448 LILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNS 527 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223334456678889999999999999999999999999999999999999999999999998888777766555433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCC
Q 000909 264 GSTGLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTEASIAASRIFDRIDRVPEIDGEDT 343 (1230)
Q Consensus 264 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~ 343 (1230)
..... ....+.++++|++.+..+.+++|.+++++.++.....|+..+...+..+.++.++++|+.++++.+++.+...
T Consensus 528 ~~~~~-~~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~- 605 (1495)
T PLN03232 528 FILNS-IPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN- 605 (1495)
T ss_pred HHHHH-HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc-
Confidence 22211 1122334678888888899999999999999999999999888899999999999999999998654322111
Q ss_pred CCcccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCC
Q 000909 344 KGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRR 423 (1230)
Q Consensus 344 ~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~ 423 (1230)
.......+.|+++|++|+|++++++++|+|+||+|++||+++||||||||||||+++|+|+++|++|.+.
T Consensus 606 --~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~-------- 675 (1495)
T PLN03232 606 --PPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV-------- 675 (1495)
T ss_pred --CCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE--------
Confidence 0111123479999999999854456799999999999999999999999999999999999999998763
Q ss_pred CCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHH
Q 000909 424 LQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIA 503 (1230)
Q Consensus 424 ~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 503 (1230)
++|++|+||+|+||||++||||||.||.+ .+++++.++++.++++++++.+|+|++|.+||+|.+|||||||||+
T Consensus 676 ----~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIa 750 (1495)
T PLN03232 676 ----VIRGSVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVS 750 (1495)
T ss_pred ----EecCcEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHH
Confidence 25679999999999999999999999985 6788899999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhcCCCeEEEEecCchhhhccCEEEEEeCCeEEEecChhHHHhhc
Q 000909 504 IARAIIKNPVILLLDEATSALDSESETLVQN-ALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRI 582 (1230)
Q Consensus 504 iARal~~~~~illlDE~ts~lD~~~~~~i~~-~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 582 (1230)
||||+|++|+|+||||||||||+++++.+.+ ++....+++|+|+||||++.++.||+|++|++|+++++|+|+|++++
T Consensus 751 LARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~- 829 (1495)
T PLN03232 751 MARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS- 829 (1495)
T ss_pred HHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhc-
Confidence 9999999999999999999999999987754 56666689999999999999999999999999999999999999985
Q ss_pred CcHHHHHHHHhhcccCCCCCCCcccccccccccCCCCccccCCCCcccCCCCC-CCCCCCCCCCCchHHHHHHhhhhhhh
Q 000909 583 DGHYAKMAKLQRQFSCDDQETIPETHVSSVTRSSGGRLSAARSSPAIFASPLP-VIDSPQPVTYLPPSFFRLLSLNAPEW 661 (1230)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1230)
++.|.+++..+......+++..............................+.. ...+++........+..+.+|.+..+
T Consensus 830 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~ 909 (1495)
T PLN03232 830 GSLFKKLMENAGKMDATQEVNTNDENILKLGPTVTIDVSERNLGSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVG 909 (1495)
T ss_pred chhHHHHHHhcccccccccccccccccccccccccccccccccccccccccchhhhhhHHHHhcCcccHHHHHHHHHHcC
Confidence 78888887665432111110000000000000000000000000000000000 00000011122233445555544422
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 662 K--QGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNFAYMGGRLTKR 739 (1230)
Q Consensus 662 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1230)
. ...+.+++............++++.|. ..... .......|.++|++++++..++.+++.+++...+.+++.+
T Consensus 910 ~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~----~~~~~-~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 984 (1495)
T PLN03232 910 GLWVVMILLVCYLTTEVLRVSSSTWLSIWT----DQSTP-KSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKR 984 (1495)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccCC-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 111111111111111111222222221 11100 0122456888899999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 740 IRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPL 819 (1230)
Q Consensus 740 l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~ 819 (1230)
+|++++++++++|++||| ++++|+++||+++|++.++..++..+..++..++.+++++++++.+++... ++++|+
T Consensus 985 lr~~l~~~ll~~p~~ff~--~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~---~~~~~~ 1059 (1495)
T PLN03232 985 LHDAMLNSILRAPMLFFH--TNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISL---WAIMPL 1059 (1495)
T ss_pred HHHHHHHHHHcCCeeeeC--cCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 999999999999999998 789999999999999999999999888888888887777777666665332 233444
Q ss_pred HHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 820 TILCFYTRKVLLS---SVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGS 896 (1230)
Q Consensus 820 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 896 (1230)
.+++++.+.++.+ ...+......+...+++.|++.|+++||+||.++++.+++++..+...+........ ..+..+
T Consensus 1060 ~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~wl~~ 1138 (1495)
T PLN03232 1060 LILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSS-NRWLTI 1138 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 4443333332221 122222333345678899999999999999999998888877776666544332211 112211
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 000909 897 AQCLTFMSWALDFWYGGTLVQ-KGQIS-----AGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLI 970 (1230)
Q Consensus 897 ~~~~~~~~~~~~~~~g~~lv~-~g~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~ 970 (1230)
.. ..+..++.++.+...+. .|.+. .+.++.++.+...+..++..+...+.+++.++.+++|+.++++.+++.
T Consensus 1139 ~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~ 1216 (1495)
T PLN03232 1139 RL--ETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEA 1216 (1495)
T ss_pred HH--HHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 11 11122222222333333 23321 233444555566677788888999999999999999999999877664
Q ss_pred CCCCCCCCCCCCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCe
Q 000909 971 PGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050 (1230)
Q Consensus 971 ~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~ 1050 (1230)
+.... +..+++.|+..|+|+|+||+|+|++. .++||+|+||+|+|||+||||||||||||||+++|+|+|+|++|+
T Consensus 1217 ~~~~~---~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~ 1292 (1495)
T PLN03232 1217 TAIIE---NNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGR 1292 (1495)
T ss_pred ccccc---CCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCce
Confidence 32100 11122346677999999999999633 357999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCChHHHhhcceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCC
Q 000909 1051 VRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQ 1130 (1230)
Q Consensus 1051 I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~ 1130 (1230)
|+|||+||+++++++||++|++|||||+||+|||||||++++ +++|+|+|+|++.++++++|+++|+||||++||+|.+
T Consensus 1293 I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~ 1371 (1495)
T PLN03232 1293 IMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGEN 1371 (1495)
T ss_pred EEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCC
Confidence 999999999999999999999999999999999999999886 7899999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEEEEec
Q 000909 1131 LSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERG 1210 (1230)
Q Consensus 1131 LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~G 1210 (1230)
|||||||||||||||+++|+|||||||||+||++||+.||++|++.+++||+|+||||++|+++||||+||++|+|+|.|
T Consensus 1372 LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~G 1451 (1495)
T PLN03232 1372 FSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYD 1451 (1495)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhHHhhcc-cccHHHhhhc
Q 000909 1211 TYAQLTHMR-GAFFNLATLQ 1229 (1230)
Q Consensus 1211 t~~eLl~~~-g~y~~l~~~q 1229 (1230)
+|+||++++ |.|++|++.+
T Consensus 1452 t~~eLl~~~~~~f~~l~~~~ 1471 (1495)
T PLN03232 1452 SPQELLSRDTSAFFRMVHST 1471 (1495)
T ss_pred CHHHHHhCCCCHHHHHHHHh
Confidence 999999986 5999999865
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-153 Score=1538.00 Aligned_cols=1158 Identities=19% Similarity=0.212 Sum_probs=866.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 29 TVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKI 108 (1230)
Q Consensus 29 ~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l 108 (1230)
++..++..++....|++++.+++.+.... ... .....++..++++.++..++.....+...+.+.++...+
T Consensus 323 ~~~~l~~~~~~~~~P~ll~~li~~~~~~~------~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L 393 (1522)
T TIGR00957 323 FCFKAIHDLMMFIGPQILSLLIRFVNDPM------APD---WQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAV 393 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC------ccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444577889998764320 110 011112222222333333333333444567788888999
Q ss_pred HHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000909 109 RYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLL 188 (1230)
Q Consensus 109 r~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~~~~~~~ 188 (1230)
+..+|+|+++++..++++ .++| +++|++++|++++.++.. .+..++..++.+++++++++..-...+++.++++++
T Consensus 394 ~~~iy~K~L~l~~~~~~~-~~~G--~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~ 469 (1522)
T TIGR00957 394 MGAVYRKALVITNSARKS-STVG--EIVNLMSVDAQRFMDLAT-YINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVL 469 (1522)
T ss_pred HHHHHHHHHhCChhhcCC-CCHH--HHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 999999999999999886 4445 999999999999988653 445555555555555444433222234555566667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 189 LIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLGIKQGTAKGLAVGSTGL 268 (1230)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (1230)
++++..++.+++++..++.++..+++.+.+.|.++||++||+|+||+.+.+++++.++++.+...+......+.......
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~ 549 (1522)
T TIGR00957 470 MVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVC 549 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888899999999999999999999999999999999999999999999999998888766665554443222111
Q ss_pred HHHHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCc
Q 000909 269 SFAIWAFLAWYGSHLVMF--KGETGGKIYAAGISFILSGLSLGSALPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGL 346 (1230)
Q Consensus 269 ~~~~~~~~~~~g~~~~~~--~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~ 346 (1230)
. ...+.++.++.+.+.. +.++.+.+++.+.++..+..|+..+...+..+.++..+.+|+.++++.+++.+.......
T Consensus 550 ~-~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~ 628 (1522)
T TIGR00957 550 T-PFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRT 628 (1522)
T ss_pred H-HHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccc
Confidence 1 1122223345555553 467889999888888888889999999999999999999999999976543211100000
Q ss_pred ccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCH
Q 000909 347 VLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQL 426 (1230)
Q Consensus 347 ~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~ 426 (1230)
......+.|+++|++|+|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||
T Consensus 629 ~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------- 699 (1522)
T TIGR00957 629 IKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------- 699 (1522)
T ss_pred cCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC--------
Confidence 001112379999999999743 35699999999999999999999999999999999999999999999997
Q ss_pred HHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHH
Q 000909 427 KWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIAR 506 (1230)
Q Consensus 427 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 506 (1230)
+|+||+|+||+|++||+|||.+|.+ .+.++..++++.+++.+++..+|+|++|.+|++|.+|||||||||+|||
T Consensus 700 -----~i~yv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLAR 773 (1522)
T TIGR00957 700 -----SVAYVPQQAWIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLAR 773 (1522)
T ss_pred -----EEEEEcCCccccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHH
Confidence 6999999999999999999999975 3456667777888888999999999999999999999999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH---hcCCCeEEEEecCchhhhccCEEEEEeCCeEEEecChhHHHhhcC
Q 000909 507 AIIKNPVILLLDEATSALDSESETLVQNALDQ---ASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRID 583 (1230)
Q Consensus 507 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~---~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 583 (1230)
|++++|+|+|||||||+||+++++.+.+.+.+ ..+++|+|+|||+++.+..||+|++|++|+++++|+|+++.++ +
T Consensus 774 Al~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~-~ 852 (1522)
T TIGR00957 774 AVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQR-D 852 (1522)
T ss_pred HHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhc-c
Confidence 99999999999999999999999999998853 4568999999999999999999999999999999999999984 7
Q ss_pred cHHHHHHHHhhcccCCCC-C-C------Cccccc---c---ccc--ccC--CCC---ccccCCCCccc---CCCCCCCC-
Q 000909 584 GHYAKMAKLQRQFSCDDQ-E-T------IPETHV---S---SVT--RSS--GGR---LSAARSSPAIF---ASPLPVID- 638 (1230)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~-~-~------~~~~~~---~---~~~--~~~--~~~---~~~~~~~~~~~---~~~~~~~~- 638 (1230)
+.|.++...+......+. + . .+.... + ... ... ... ........... .......+
T Consensus 853 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1522)
T TIGR00957 853 GAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEA 932 (1522)
T ss_pred hhHHHHHHhhccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccccc
Confidence 788887764432111000 0 0 000000 0 000 000 000 00000000000 00000000
Q ss_pred --C------CCCCCCCchHHHHHHhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHH
Q 000909 639 --S------PQPVTYLPPSFFRLLSLNAPE-WKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSL 709 (1230)
Q Consensus 639 --~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (1230)
. ++........+..+++|.+.. +...++.+++..+.........++++.|.+.... .........|..
T Consensus 933 ~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~---~~~~~~~~~~~~ 1009 (1522)
T TIGR00957 933 KEETWKLMEADKAQTGQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMV---NGTQNNTSLRLS 1009 (1522)
T ss_pred ccchhhhHHHHHHhcCcccHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---cCCCCCcchHHH
Confidence 0 000011112233333333322 2211111122222222222333444443321110 000112345667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHH
Q 000909 710 IFCSLSLISLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLV 789 (1230)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~ 789 (1230)
+|++++++..++.++..+++.+.+.+++.++|++++++++++|++||| .+++|+++|||++|++.++..++..+..++
T Consensus 1010 iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~ilnR~s~Di~~id~~l~~~~~~~~ 1087 (1522)
T TIGR00957 1010 VYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFE--RTPSGNLVNRFSKELDTVDSMIPPVIKMFM 1087 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhc--cCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888899999999999999999999999999999998 789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHH
Q 000909 790 QTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVL 869 (1230)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~ 869 (1230)
..++.+++.++++++.+|.+++++++++++..+...++.+..+...+......+...+++.|++.|+++||+||.++++.
T Consensus 1088 ~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~ 1167 (1522)
T TIGR00957 1088 GSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFI 1167 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHH
Confidence 99999988888888888766554444333332222222222222222223334556799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 870 QIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMSWALDFWYGGTLVQ-KGQISAGDVFKTFFILVSTGKVIAEAGSMTS 948 (1230)
Q Consensus 870 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~-~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 948 (1230)
+++.+..+...+..........+.......+. .+++++.++..+. .|.+++|.+++++.+...+..++..+...+.
T Consensus 1168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~ 1244 (1522)
T TIGR00957 1168 HQSDLKVDENQKAYYPSIVANRWLAVRLECVG---NCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSS 1244 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888877765443333222222222221 2233344444443 6889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcC
Q 000909 949 DLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGK 1028 (1230)
Q Consensus 949 ~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~ 1028 (1230)
+++.++.|++|+.++++.+++.+... ++..+++.|+..|+|+|+||+|+|+++ .++||+|+||+|+|||+||||||
T Consensus 1245 ~~e~~~~s~eRi~~~~~~~~e~~~~~---~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGr 1320 (1522)
T TIGR00957 1245 EMETNIVAVERLKEYSETEKEAPWQI---QETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGR 1320 (1522)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccccc---cCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECC
Confidence 99999999999999998766543110 011122346778999999999999754 24699999999999999999999
Q ss_pred CCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhc
Q 000909 1029 SGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAAN 1108 (1230)
Q Consensus 1029 SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~ 1108 (1230)
||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+||||+||++.. +++|+|+|+|++.|+
T Consensus 1321 TGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-~~sdeei~~al~~a~ 1399 (1522)
T TIGR00957 1321 TGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-QYSDEEVWWALELAH 1399 (1522)
T ss_pred CCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-CCCHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999998543 689999999999999
Q ss_pred hHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccC
Q 000909 1109 AHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHR 1188 (1230)
Q Consensus 1109 l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHr 1188 (1230)
++++|.++|+||||+|||+|.+|||||||||||||||+++|+|||||||||+||++||+.||++|++.+++||+|+||||
T Consensus 1400 l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHR 1479 (1522)
T TIGR00957 1400 LKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHR 1479 (1522)
T ss_pred cHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhcCEEEEEeCcEEEEecCHhHHhhcccccHHHhhhc
Q 000909 1189 LNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLATLQ 1229 (1230)
Q Consensus 1189 l~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~g~y~~l~~~q 1229 (1230)
++++.+||||+|||+|+|+|+|+|+||++++|.|++|++..
T Consensus 1480 l~ti~~~DrIlVld~G~IvE~G~~~eLl~~~~~f~~l~~~~ 1520 (1522)
T TIGR00957 1480 LNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIFYSMAKDA 1520 (1522)
T ss_pred HHHHHhCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHc
Confidence 99999999999999999999999999999999999999863
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-147 Score=1468.30 Aligned_cols=1161 Identities=17% Similarity=0.191 Sum_probs=863.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 26 VLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQV 105 (1230)
Q Consensus 26 ~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 105 (1230)
++.++..++..++....|++++.+++.+... +.. ......+++.+++..++..++.....+...+.+.++.
T Consensus 247 ~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~-------~~~--~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r 317 (1560)
T PTZ00243 247 WWQIPFKLLSDVCTLTLPVLLKYFVKFLDAD-------NAT--WGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYR 317 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------Ccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444554455555557788888865322 110 0111112222333334444555555566677777888
Q ss_pred HHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000909 106 VKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPT 185 (1230)
Q Consensus 106 ~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~~~~ 185 (1230)
..++..+|+|+++++...+.+ ...++|+++|.+++|++.+.+++.. +..++...+.+++++++++.+..+.+++.+++
T Consensus 318 ~~L~~~if~K~l~ls~~~~~~-~~~~~G~i~nl~s~Dv~~i~~~~~~-~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~v 395 (1560)
T PTZ00243 318 SALNALIFEKCFTISSKSLAQ-PDMNTGRIINMMSTDVERINSFMQY-CMYLWSSPMVLLLSILLLSRLVGWCALMAVAV 395 (1560)
T ss_pred HHHHHHHHHHHHhCChhhhCC-CCCCHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 888889999999999877652 1223459999999999999999844 45666677777777777776666678888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 186 LLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLGIKQGTAKGLAVGS 265 (1230)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (1230)
+++++++..++.++..+.+++.++..+++.+.+.|.++|||+||+++||+.+.+++++.++++.+...+......+...+
T Consensus 396 l~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~ 475 (1560)
T PTZ00243 396 LLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFV 475 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999999999999999999999999999999999988877766666554433
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC----CC
Q 000909 266 TGLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTEASIAASRIFDRIDRVPEID----GE 341 (1230)
Q Consensus 266 ~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~----~~ 341 (1230)
...... .+.+..++++.+..+.++++.+|+++.++..+..|+..+...+..+.++.+|++||.++++.++... +.
T Consensus 476 ~~~~p~-l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~ 554 (1560)
T PTZ00243 476 NNATPT-LMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDM 554 (1560)
T ss_pred HHHHHH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccc
Confidence 322111 2223345677778889999999999999999999999999999999999999999999997543100 00
Q ss_pred -C--------CC--C---------------cc---------------------------cCCccccEEEEEEEEECCCC-
Q 000909 342 -D--------TK--G---------------LV---------------------------LDEVRGEIEFEHVKFSYPSR- 367 (1230)
Q Consensus 342 -~--------~~--~---------------~~---------------------------~~~~~~~i~~~~v~~~y~~~- 367 (1230)
+ .. . .. .....+.+.++|++|+++..
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (1560)
T PTZ00243 555 EEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSA 634 (1560)
T ss_pred hhhcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccccccccccccc
Confidence 0 00 0 00 00011357788887765310
Q ss_pred ------------------------------------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC
Q 000909 368 ------------------------------------PDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADD 411 (1230)
Q Consensus 368 ------------------------------------~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~ 411 (1230)
.++++|+|+||+|++||+++|+||||||||||+++|+|+++|++
T Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~ 714 (1560)
T PTZ00243 635 SRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISE 714 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence 12458999999999999999999999999999999999999999
Q ss_pred ceEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCC
Q 000909 412 GIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERG 491 (1230)
Q Consensus 412 G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 491 (1230)
|+|.++ ++||||+|+||+|++||+|||.++.+. +.+++.++.+.++++++++.+|+|++|.+|++|
T Consensus 715 G~i~~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~~~-~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g 780 (1560)
T PTZ00243 715 GRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFDEE-DAARLADAVRVSQLEADLAQLGGGLETEIGEKG 780 (1560)
T ss_pred cEEEEC-------------CeEEEEeCCCccCCCcHHHHHHcCChh-hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCC
Confidence 999874 379999999999999999999998642 445566777788899999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhcCCCeEEEEecCchhhhccCEEEEEeCCeEE
Q 000909 492 ALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQN-ALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLV 570 (1230)
Q Consensus 492 ~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~-~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~ 570 (1230)
.+|||||||||+||||++++|+|+|||||||+||+++++.+.+ ++....+|+|+|+|||+++.+..||+|++|++|+++
T Consensus 781 ~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~ 860 (1560)
T PTZ00243 781 VNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVE 860 (1560)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999998877765 444445689999999999999999999999999999
Q ss_pred EecChhHHHhhcCcHHHHHHHHhhcccCC-CCCCCcccccccccccC----CCCccccCCCCccc-CCCCCCC--C--CC
Q 000909 571 EIGTHNDLINRIDGHYAKMAKLQRQFSCD-DQETIPETHVSSVTRSS----GGRLSAARSSPAIF-ASPLPVI--D--SP 640 (1230)
Q Consensus 571 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~--~--~~ 640 (1230)
++|+++++++ .+.|.++........+. +.+...+.......... .............. ....+.. . ..
T Consensus 861 ~~G~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 938 (1560)
T PTZ00243 861 FSGSSADFMR--TSLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAGRLMTR 938 (1560)
T ss_pred EecCHHHHHh--ChHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccchhhhH
Confidence 9999999986 35677665542221110 00000000000000000 00000000000000 0000000 0 00
Q ss_pred CCCCCCchHHHHHHhhhhhhhHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHH
Q 000909 641 QPVTYLPPSFFRLLSLNAPEWKQG-LIG-SLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLIS 718 (1230)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1230)
+........|..+..|.+...... .+. +++.++.........++++.|... . .......|+.+|++++++.
T Consensus 939 e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~-----~--~~~~~~~~l~~y~~~~~~~ 1011 (1560)
T PTZ00243 939 EEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTR-----S--FKLSAATYLYVYLGIVLLG 1011 (1560)
T ss_pred HHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----c--cCCCcccHHHHHHHHHHHH
Confidence 000112223434433333211111 111 111111111111222222222211 0 1112335667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 719 LAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIA 798 (1230)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~ 798 (1230)
.++.+++.+.....+.+.+.++|+++|++++++|+.||| ++++|+++|||++|++.++..++..+..++..++.+++.
T Consensus 1012 ~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd--~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~ 1089 (1560)
T PTZ00243 1012 TFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFD--TTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSS 1089 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhcc--CCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777788888999999999999999999999 789999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHH
Q 000909 799 MIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVK----AQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDE 874 (1230)
Q Consensus 799 ~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~ 874 (1230)
++++++.+|.+. ++++|+.++++++..++ ....++.++ ..+...+++.|++.|+++||+||.++.+.++|.+
T Consensus 1090 li~~~~~~p~~~---~~~i~~~~~~~~i~~~~-~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~ 1165 (1560)
T PTZ00243 1090 ILVTSASQPFVL---VALVPCGYLYYRLMQFY-NSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALR 1165 (1560)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHH
Confidence 888888887443 33344443333333322 222333333 3455679999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 875 AQEEPRKQARKKSWLAGIGMGSAQCLTFMSWALDFWYGGT--LVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAK 952 (1230)
Q Consensus 875 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 952 (1230)
..+...+..........+......++..+..+++.+++.. +...+.+++|.++.++.+...+..++..+...+.+++.
T Consensus 1166 ~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~ 1245 (1560)
T PTZ00243 1166 RLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEA 1245 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888877665544333333333333333333333333333 33345678998888888888888999999999999999
Q ss_pred HHHHHHHHHHHHccCCCCCCCC-CC--------------------CCCCCCC---CcccccCcEEEEEEEEECCCCCCcc
Q 000909 953 GSTAVASVFKILDRQSLIPGSS-QA--------------------GDGTRGS---KLQKISGKIEMRRVDFAYPSRPDAL 1008 (1230)
Q Consensus 953 ~~~s~~ri~~~~~~~~~~~~~~-~~--------------------~~~~~~~---~~~~~~g~I~f~~Vsf~Y~~~~~~~ 1008 (1230)
++.+++|+.++++..++++... .. .+...++ +.++..|.|+|+||+|+|++. .++
T Consensus 1246 ~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~ 1324 (1560)
T PTZ00243 1246 DMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPL 1324 (1560)
T ss_pred HHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCc
Confidence 9999999999997544321000 00 0000000 123356899999999999753 346
Q ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcceEEcccccCCcccHHHHh
Q 000909 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNI 1088 (1230)
Q Consensus 1009 vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl 1088 (1230)
||+||||+|+|||+||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+||||+||
T Consensus 1325 vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNI 1404 (1560)
T PTZ00243 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNV 1404 (1560)
T ss_pred eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccC-CCEEEeecccCCcCHHHHH
Q 000909 1089 VFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRN-PTILLLDEATSALDVQSEQ 1167 (1230)
Q Consensus 1089 ~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~-p~ILlLDEaTSaLD~~te~ 1167 (1230)
++++ +++|+|+|+|++.++++++|.++|+||||.|||+|.+|||||||||||||||+++ |+|||||||||+||++||+
T Consensus 1405 dp~~-~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~ 1483 (1560)
T PTZ00243 1405 DPFL-EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDR 1483 (1560)
T ss_pred Cccc-CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHH
Confidence 8764 7899999999999999999999999999999999999999999999999999996 8999999999999999999
Q ss_pred HHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEEEEecCHhHHhhc-ccccHHHhhhc
Q 000909 1168 VVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHM-RGAFFNLATLQ 1229 (1230)
Q Consensus 1168 ~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~-~g~y~~l~~~q 1229 (1230)
.|+++|++.+++||+|+||||++|+.+||+|+||++|+|+|.|+|+||+++ +|.|++|++.+
T Consensus 1484 ~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1484 QIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred HHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999986 89999999865
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-145 Score=1449.71 Aligned_cols=1137 Identities=18% Similarity=0.223 Sum_probs=837.7
Q ss_pred HHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 000909 40 NCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQ 119 (1230)
Q Consensus 40 p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~ 119 (1230)
.+.|++++.+++.+.... ... ......+++.++++.++..++.....+.....+.++-..+...+|+|++++
T Consensus 97 ~~~P~ll~~li~~~~~~~------~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l 168 (1490)
T TIGR01271 97 AVQPLLLGRIIASYDPFN------APE--REIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKL 168 (1490)
T ss_pred HHHHHHHHHHHHHhccCC------CCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334467888888763210 000 011112222233333344444444555555666667777777779999999
Q ss_pred CchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 120 EVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLIIPGMIYGKY 199 (1230)
Q Consensus 120 ~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 199 (1230)
+...+++ .++| +++|++++|++.+.+++... ..++...+.+++++++++....+.+++.++++++++++..+++++
T Consensus 169 ~~~~~~~-~~~g--~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~ 244 (1490)
T TIGR01271 169 SSRVLDK-ISTG--QLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQK 244 (1490)
T ss_pred CHHHhcC-CCHH--HHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998885 4445 99999999999999987643 344455555666666666655567788888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 200 LIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLGIKQGTAKGLAVGSTGLSFAIWAFLAWY 279 (1230)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (1230)
+.+..++.++..+++.+.+.|.++|||+||+|+||+.+.+++++.++++.+...+......+...+... ....+.++.+
T Consensus 245 ~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f 323 (1490)
T TIGR01271 245 MMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFF-SGFFVVFLSV 323 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988877776655433332222 2223344555
Q ss_pred HHHHHHhcCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcccCCccccEEEE
Q 000909 280 GSHLVMFKGETGGKIYAAGISFILSGLSLG-SALPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFE 358 (1230)
Q Consensus 280 g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 358 (1230)
+++.+.. ..+++.+|+++.++..+..|+. .+...+..+.++.++++||.+++..++..+. . . ......|+++
T Consensus 324 ~~y~~~~-~~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~-~---~--~~~~~~i~~~ 396 (1490)
T TIGR01271 324 VPYALIK-GIILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTL-E---Y--NLTTTEVEMV 396 (1490)
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc-c---c--cCCCCceEEe
Confidence 6666554 4688999998888887777764 5777889999999999999999976432111 1 0 1112359999
Q ss_pred EEEEECCCCC-------------------------------CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 000909 359 HVKFSYPSRP-------------------------------DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 359 ~v~~~y~~~~-------------------------------~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
|++|.|+... .+++|+|+||+|++||+++|+||||||||||+++|+|++
T Consensus 397 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~ 476 (1490)
T TIGR01271 397 NVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGEL 476 (1490)
T ss_pred cceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 9999995310 135899999999999999999999999999999999999
Q ss_pred CCCCceEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchh
Q 000909 408 DADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKV 487 (1230)
Q Consensus 408 ~~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~ 487 (1230)
+|++|+|.++| +|+||+|+||+|++||+|||.||.+ .+.++..++++.+++.+++..+|+|++|.+
T Consensus 477 ~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~L~~~l~~l~~g~~t~v 542 (1490)
T TIGR01271 477 EPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTSVIKACQLEEDIALFPEKDKTVL 542 (1490)
T ss_pred CCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc-cchHHHHHHHHHHhHHHHHHhccccccccc
Confidence 99999999998 5999999999999999999999864 334455566777788899999999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhcCCCeEEEEecCchhhhccCEEEEEeC
Q 000909 488 GERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQN-ALDQASLGRTTLVVAHKLSTVRNADLIAVVDN 566 (1230)
Q Consensus 488 ~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~-~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~ 566 (1230)
|++|.+|||||||||+||||++++|+|+|||||||+||+++++.+.+ ++.+..+++|+|+|||+++.+..||+|++|++
T Consensus 543 g~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~ 622 (1490)
T TIGR01271 543 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHE 622 (1490)
T ss_pred cCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999987 46666679999999999999999999999999
Q ss_pred CeEEEecChhHHHhhcCcHHHHHHHHhhccc--------------------C--------CCC------CCCccccccc-
Q 000909 567 GCLVEIGTHNDLINRIDGHYAKMAKLQRQFS--------------------C--------DDQ------ETIPETHVSS- 611 (1230)
Q Consensus 567 G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~--------------------~--------~~~------~~~~~~~~~~- 611 (1230)
|++++.|+++++.+. ++.|.+......... . .+. +...+.....
T Consensus 623 g~i~~~g~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1490)
T TIGR01271 623 GVCYFYGTFSELQAK-RPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRK 701 (1490)
T ss_pred CEEEEEcCHHHHHhc-ChHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999874 556655543110000 0 000 0000000000
Q ss_pred -----c----------------c---ccCCCCc---c-------c---------cCC-C---------Ccc-------cC
Q 000909 612 -----V----------------T---RSSGGRL---S-------A---------ARS-S---------PAI-------FA 631 (1230)
Q Consensus 612 -----~----------------~---~~~~~~~---~-------~---------~~~-~---------~~~-------~~ 631 (1230)
. . ....... . . ... . ... ..
T Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1490)
T TIGR01271 702 QSIILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTH 781 (1490)
T ss_pred ccccccccccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhcccc
Confidence 0 0 0000000 0 0 000 0 000 00
Q ss_pred ----------------------------CCCC------CCC------C----C---------CCCCCCchHHHHHHhhhh
Q 000909 632 ----------------------------SPLP------VID------S----P---------QPVTYLPPSFFRLLSLNA 658 (1230)
Q Consensus 632 ----------------------------~~~~------~~~------~----~---------~~~~~~~~~~~~~~~~~~ 658 (1230)
...+ ..+ . . +........|..+++|.+
T Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~ 861 (1490)
T TIGR01271 782 SNRGENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYIT 861 (1490)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHH
Confidence 0000 000 0 0 000011223333333332
Q ss_pred hh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hhh-H---------hhhHHHH-HHHHHHHHHH
Q 000909 659 PE--WKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKS--------HSE-M---------QSRIRTY-SLIFCSLSLI 717 (1230)
Q Consensus 659 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~---------~~~~~~~-~~~~~~~~~~ 717 (1230)
.. +....+.+++.++.........+|+.. |+... ... . .....+| ..+|++++++
T Consensus 862 ~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 937 (1490)
T TIGR01271 862 TNRNLVFVLIFCLVIFLAEVAASLLGLWLIT----DNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADS 937 (1490)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHhhHHHHh----cccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHH
Confidence 21 111111112222222222222222222 22100 000 0 0011223 3345555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 718 SLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAI 797 (1230)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~ 797 (1230)
..++.+++.+++.+.+.+++.++|.+++++++++|+.||+ .+++|+++|||++|++.++..++..+..++..++.+++
T Consensus 938 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~ 1015 (1490)
T TIGR01271 938 VLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLN--TMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLG 1015 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788888999999999999999999999999999998 78999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHhchHHHHHHchHHHHHHHHH
Q 000909 798 AMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVK----AQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFD 873 (1230)
Q Consensus 798 ~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~ 873 (1230)
.++++++++|.+.+ +++|++++++++..++.+. .++.++ ..+...+++.|++.|+.+||+||.++.+.+++.
T Consensus 1016 ~l~~i~~~~p~l~l---~~~~l~~~~~~~~~~~~~~-~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~ 1091 (1490)
T TIGR01271 1016 AIFVVSVLQPYIFI---AAIPVAVIFIMLRAYFLRT-SQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFH 1091 (1490)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHH
Confidence 88888888876544 3444444443333333322 333333 334467899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 874 EAQEEPRKQARKKSWLAGIGMGSAQCLTFMSW--ALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLA 951 (1230)
Q Consensus 874 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 951 (1230)
+..+...+..........+.......+..+.. ++.++++. ..++.|.++.++.+...+..++..+...+.+++
T Consensus 1092 ~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~-----~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le 1166 (1490)
T TIGR01271 1092 KALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGT-----NQDGEGEVGIILTLAMNILSTLQWAVNSSIDVD 1166 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99886554333221111111111111111111 11122222 234566677767777777788888899999999
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCCC-----------CCCCCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCC
Q 000909 952 KGSTAVASVFKILDRQSLIPGSSQAG-----------DGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPG 1020 (1230)
Q Consensus 952 ~~~~s~~ri~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~G 1020 (1230)
..+.+++|+.++.+.+++.+...... +....++.||..|.|+|+||+|+|++. .++||+|+||+|+||
T Consensus 1167 ~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~G 1245 (1490)
T TIGR01271 1167 GLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGG 1245 (1490)
T ss_pred HHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCC
Confidence 99999999999998776543211100 001122346778999999999999753 457999999999999
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcceEEcccccCCcccHHHHhccCCCCCCHHHH
Q 000909 1021 TSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEV 1100 (1230)
Q Consensus 1021 e~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei 1100 (1230)
||||||||||||||||+++|+|+|+ ++|+|+|||+||++++++++|++|++|||||+||+||||+||++.. +++|+++
T Consensus 1246 ekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-~~tdeei 1323 (1490)
T TIGR01271 1246 QRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-QWSDEEI 1323 (1490)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-CCCHHHH
Confidence 9999999999999999999999998 7999999999999999999999999999999999999999998654 6899999
Q ss_pred HHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCC
Q 000909 1101 VEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGR 1180 (1230)
Q Consensus 1101 ~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~ 1180 (1230)
|+||+.++++++|.++|+||||+|+|+|.+|||||||||||||||+++|+|||||||||+||++||+.|++.|++.+++|
T Consensus 1324 ~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~ 1403 (1490)
T TIGR01271 1324 WKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNC 1403 (1490)
T ss_pred HHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEccCchhhhhcCEEEEEeCcEEEEecCHhHHhhcccccHHHhhhc
Q 000909 1181 TTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLATLQ 1229 (1230)
Q Consensus 1181 TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~g~y~~l~~~q 1229 (1230)
|||+||||++++.+||||+||++|+|+|.|+|++|++++|.|++|++.+
T Consensus 1404 TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~~~~f~~l~~~~ 1452 (1490)
T TIGR01271 1404 TVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAA 1452 (1490)
T ss_pred EEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCcHHHHHHHHh
Confidence 9999999999999999999999999999999999999899999999865
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-111 Score=982.85 Aligned_cols=569 Identities=36% Similarity=0.579 Sum_probs=541.9
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 649 SFFRLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYN 728 (1230)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1230)
.+++++.+.+|+|+++..+.++..+........|.+.+.+++.+... .+...........+.++.++++++++++.++
T Consensus 134 ~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~--~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~ 211 (716)
T KOG0058|consen 134 LLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEG--DDSADALKRACTILLGLFLIGALANAIRGGL 211 (716)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999988761 1112334445667777888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 729 FAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWK 808 (1230)
Q Consensus 729 ~~~~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 808 (1230)
+.++++++..++|.++|+++++++++||| .|.+|++++|+++|+..+.+.++..+...+.+....++++.+|+.++|.
T Consensus 212 ~~~a~~rv~~rlR~~lF~sil~QdiaFFD--~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~ 289 (716)
T KOG0058|consen 212 LQYAGERVVARLRTDLFRSLLRQDIAFFD--ENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWR 289 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhc--cCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHH
Confidence 99999999999999999999999999999 7889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 809 LAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSW 888 (1230)
Q Consensus 809 l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 888 (1230)
++++.+..+|++++...++.++.++.+++.++..+++++...|.+.+++|||+|+.|+...++|.+..++..+..++...
T Consensus 290 Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~ 369 (716)
T KOG0058|consen 290 LTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAV 369 (716)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 000909 889 LAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQS 968 (1230)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~ 968 (1230)
..+.+++.+..........++++|++++..|+++.|++..+++|....+..+..+...++++.++..|.+|+++++|++|
T Consensus 370 a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P 449 (716)
T KOG0058|consen 370 AYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKP 449 (716)
T ss_pred HhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCC-cccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCC
Q 000909 969 LIPGSSQAGDGTRGSK-LQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVE 1047 (1230)
Q Consensus 969 ~~~~~~~~~~~~~~~~-~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~ 1047 (1230)
..+.. +.. +....|.|+|+||+|+||.||+.|||||+||+|+|||+||+||||||||||++++|+|||+|+
T Consensus 450 ~i~~~--------G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt 521 (716)
T KOG0058|consen 450 RIPLT--------GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT 521 (716)
T ss_pred CCCCC--------CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 87643 111 115789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEECCeecCCCChHHHhhcceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCC
Q 000909 1048 QGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGER 1127 (1230)
Q Consensus 1048 ~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~ 1127 (1230)
+|+|++||+||+++++++||++||+|.|||+||++||+|||.||.+++++|||.+|+++|++|+||.++|+||||.|||+
T Consensus 522 sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEk 601 (716)
T KOG0058|consen 522 SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEK 601 (716)
T ss_pred CCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEEE
Q 000909 1128 GVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVV 1207 (1230)
Q Consensus 1128 G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Iv 1207 (1230)
|.+|||||||||||||||+|||+||||||||||||.++|..||++|++..+++|||+|||||+||+.||+|+|+++|+|+
T Consensus 602 G~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~ 681 (716)
T KOG0058|consen 602 GSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVV 681 (716)
T ss_pred cccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCHhHHhhcc-cccHHHhhhc
Q 000909 1208 ERGTYAQLTHMR-GAFFNLATLQ 1229 (1230)
Q Consensus 1208 e~Gt~~eLl~~~-g~y~~l~~~q 1229 (1230)
|.|+|+|||+++ |.|++|+++|
T Consensus 682 E~G~h~eLl~~~~gly~~Lv~~q 704 (716)
T KOG0058|consen 682 EMGTHDELLSKPNGLYAKLVQRQ 704 (716)
T ss_pred ecccHHHHhhCcccHHHHHHHHh
Confidence 999999999996 8999999988
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-106 Score=941.98 Aligned_cols=574 Identities=39% Similarity=0.586 Sum_probs=531.3
Q ss_pred hHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHHHHHHHHHH
Q 000909 9 NIGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGLAVMV 88 (1230)
Q Consensus 9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (1230)
.+++++.|.++..++ +..+.++..+......+.|.+.|+++|.+... .. ....+...+..+.++.++..+
T Consensus 134 ~~~rl~~l~~~~~~~-l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~-------~~--~~~~~~~~~~~l~~l~~~~a~ 203 (716)
T KOG0058|consen 134 LLKRLLGLLKPEWKW-LVAAFVLLLVSSLINMFIPYYLGKLIDTISEG-------DD--SADALKRACTILLGLFLIGAL 203 (716)
T ss_pred HHHHHHHHhchhHHH-HHHHHHHHHHHHhhcchhhHHHHHHHHHHHhc-------cc--hHHHHHHHHHHHHHHHHHHHH
Confidence 678999999887554 45666666666666666778999999987541 11 123444556667777888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 000909 89 VAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGL 168 (1230)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~ 168 (1230)
+.+++.+++.+.++++..++|..+|+++++++++|||+ +++| |++||++.|+..+.+.++..+...+.+.+..++++
T Consensus 204 ~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~-nktG--eL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~ 280 (716)
T KOG0058|consen 204 ANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDE-NKTG--ELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGL 280 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-CCcc--HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999997 7788 99999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHH
Q 000909 169 AFSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDST 248 (1230)
Q Consensus 169 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 248 (1230)
++|++++|.|+++.++.+|++.++..+++++.++..++.|++.++.+...+|.+++|||||+|+.|+.+.+||.+..++.
T Consensus 281 ~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~ 360 (716)
T KOG0058|consen 281 GFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREV 360 (716)
T ss_pred HHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 249 TKLGIKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTEASIAASR 327 (1230)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~r 327 (1230)
.+...|.....+++.... +........++++|++++..|.+|.|.+.+|+.|......++..+...+..++++..|.+|
T Consensus 361 ~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~r 440 (716)
T KOG0058|consen 361 LKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASER 440 (716)
T ss_pred HHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 999988888887777666 6677778889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCCCCCCCCcccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 000909 328 IFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 328 i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
++|++|++|..+... ...+...+|.|+|+||+|+||.+++.++|+|+||+|+|||+||+||||||||||++++|.+||
T Consensus 441 vFel~dr~P~i~~~G--~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 441 VFELMDRKPRIPLTG--TLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred HHHHhccCCCCCCCC--ccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 999999999876542 223335789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchh
Q 000909 408 DADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKV 487 (1230)
Q Consensus 408 ~~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~ 487 (1230)
+|++|+|.+||+||+++++.+||++||+|.|||.||++||+|||.||.+++++|++..|++.+++|+||.++|+||+|.+
T Consensus 519 ~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~V 598 (716)
T KOG0058|consen 519 DPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVV 598 (716)
T ss_pred CCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEeCC
Q 000909 488 GERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNG 567 (1230)
Q Consensus 488 ~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G 567 (1230)
||+|.+|||||||||||||||++||.||||||+|||||+++|..+++++.+..+++|||+|+|||+|+++||+|+|+++|
T Consensus 599 GEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G 678 (716)
T KOG0058|consen 599 GEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKG 678 (716)
T ss_pred CCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecChhHHHhhcCcHHHHHHHHhhccc
Q 000909 568 CLVEIGTHNDLINRIDGHYAKMAKLQRQFS 597 (1230)
Q Consensus 568 ~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~ 597 (1230)
+++|.|+|+||+++.+|.|.++.+.|....
T Consensus 679 ~V~E~G~h~eLl~~~~gly~~Lv~~q~~~~ 708 (716)
T KOG0058|consen 679 RVVEMGTHDELLSKPNGLYAKLVQRQLDSG 708 (716)
T ss_pred eEEecccHHHHhhCcccHHHHHHHHhcccC
Confidence 999999999999987799999998876544
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-100 Score=941.52 Aligned_cols=578 Identities=42% Similarity=0.696 Sum_probs=541.6
Q ss_pred ccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHHHHHHH
Q 000909 6 NKNNIGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGLA 85 (1230)
Q Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (1230)
.+.++.+++++.+| .|.+++++++++++.|+..|++.++++.+++.+... +.+........+++++++++++
T Consensus 648 ~~~s~~~i~k~~~p-e~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~-------~~~~~~~~~~~~al~f~~l~~~ 719 (1228)
T KOG0055|consen 648 EKVSFWRIFKLNKP-EWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPP-------DDDELKREVRAWALIFLGLGIV 719 (1228)
T ss_pred ccccHHHHHHhccc-hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCC-------ChHHHHHHHHHHHHHHHHHHHH
Confidence 34579999999988 577889999999999999999999999999988643 1111222233477888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHH
Q 000909 86 VMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFI 165 (1230)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i 165 (1230)
..+..+++++++...++++..++|...|+++++++.+|||+..++ |.+.+|+.+|...++..+.+.+..+++++..++
T Consensus 720 ~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns--g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~ 797 (1228)
T KOG0055|consen 720 SGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS--GALSSRLATDASNVRAAVGDRLSLVVQNIAAVI 797 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc--hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999985444 599999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHH
Q 000909 166 SGLAFSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAIL 245 (1230)
Q Consensus 166 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~ 245 (1230)
+++++.|+++|+++++++++.|++++..+...+.+.....+..+..++...+..|++++||||++|+.|+++.+.|.+..
T Consensus 798 ~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l 877 (1228)
T KOG0055|consen 798 IGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEEL 877 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 246 DSTTKLGIKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTEASIA 324 (1230)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s 324 (1230)
++..+...+.+.+.++.+++. .+.++.+++.+|+|++++..|.+++.+++-+++.+.+....+++.....+.+.++..|
T Consensus 878 ~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~A 957 (1228)
T KOG0055|consen 878 EKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIA 957 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 999999999999999999988 8889999999999999999999999999999988888888899999999999999999
Q ss_pred HHHHHHHhccCCCCCCCCCCCcccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh
Q 000909 325 ASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQ 404 (1230)
Q Consensus 325 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~ 404 (1230)
+.+++++++++|.++..++.+...++.+|+|+|+||+|+||.+|+.++|+|+||+|++||++||||||||||||++.+|.
T Consensus 958 a~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLe 1037 (1228)
T KOG0055|consen 958 AGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLE 1037 (1228)
T ss_pred HHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHH
Confidence 99999999999877655433334566789999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCceEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCccc
Q 000909 405 RFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYE 484 (1230)
Q Consensus 405 ~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~ 484 (1230)
|+|+|++|.|.|||+|+++++++++|++||.|+|||.||++||||||+||..+++.+|+.+||+.+++|+||.+||+|||
T Consensus 1038 RfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyD 1117 (1228)
T KOG0055|consen 1038 RFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYD 1117 (1228)
T ss_pred HhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCccc
Confidence 99999999999999999999999999999999999999999999999999656899999999999999999999999999
Q ss_pred chhcCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEE
Q 000909 485 TKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVV 564 (1230)
Q Consensus 485 t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l 564 (1230)
|.+||+|.+||||||||||||||++|||+||||||+|||||.++|+.+|++|++...|||+|+|||||+++++||.|.|+
T Consensus 1118 T~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi 1197 (1228)
T KOG0055|consen 1118 TRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVL 1197 (1228)
T ss_pred CccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEecChhHHHhhcCcHHHHHHHHhh
Q 000909 565 DNGCLVEIGTHNDLINRIDGHYAKMAKLQR 594 (1230)
Q Consensus 565 ~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 594 (1230)
+||+|+|+|+|++|++ .+|.|.++++.|.
T Consensus 1198 ~~G~VvE~GtH~~L~~-~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1198 KNGKVVEQGTHDELLA-KRGIYFRLVQLQS 1226 (1228)
T ss_pred ECCEEEecccHHHHHh-CCCchHHHhhhcc
Confidence 9999999999999999 5999999998765
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-94 Score=878.73 Aligned_cols=560 Identities=29% Similarity=0.476 Sum_probs=509.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 658 APEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNFAYMGGRLT 737 (1230)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1230)
.++|+.+.-.++.+++........+++...+++..... ...+........+++.+++..++.+++.+++.+.+.++.
T Consensus 150 ~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~---~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld 226 (709)
T COG2274 150 FKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPD---ASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLD 226 (709)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444445555555544422 123344555666777788899999999999999999999
Q ss_pred HHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 738 KRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQ 817 (1230)
Q Consensus 738 ~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~ 817 (1230)
.++-.++|+|++++|++||. .+++|++++|+ +|.+.++.++.......+..+..+++.++++++++|.+++++++.+
T Consensus 227 ~~l~~~~~~hll~Lpl~~f~--~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~ 303 (709)
T COG2274 227 LELSGRFFRHLLRLPLSYFE--KRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAI 303 (709)
T ss_pred HHHHHHHHHHHHcCcHHHcc--CCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999997 78999999998 6899999999888888888888888888889999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 818 PLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSA 897 (1230)
Q Consensus 818 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 897 (1230)
|+.++..++..+.+++..++..+..++.++...|++.|++|+|+.+.|.++..+|++...+..+...+..........+.
T Consensus 304 ~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (709)
T COG2274 304 PLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIK 383 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCC
Q 000909 898 QCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGSSQAG 977 (1230)
Q Consensus 898 ~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~ 977 (1230)
.++..+..++++|+|+.++..|.+|.|+++++.++...+..|+..+...+.++.+...+.+|+.++++.++|.+..
T Consensus 384 ~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~---- 459 (709)
T COG2274 384 SLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGD---- 459 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998875432
Q ss_pred CCCCCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCee
Q 000909 978 DGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMD 1057 (1230)
Q Consensus 978 ~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~d 1057 (1230)
......++..|+|+|+||+|+|+.+ ++++|+|+||+|+|||+|||||+||||||||+|+|.|+|+|++|+|++||+|
T Consensus 460 --~~~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~d 536 (709)
T COG2274 460 --KTLIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVD 536 (709)
T ss_pred --cccccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe
Confidence 1123445678999999999999765 3479999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHhhcceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHH
Q 000909 1058 VRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQ 1137 (1230)
Q Consensus 1058 i~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 1137 (1230)
+.+++++.||++|+|||||++||+|||||||++++|++++|++++||+.+++|+||.++|.||||+|||+|.+|||||||
T Consensus 537 l~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQ 616 (709)
T COG2274 537 LNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQ 616 (709)
T ss_pred HHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEEEEecCHhHHhh
Q 000909 1138 RIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTH 1217 (1230)
Q Consensus 1138 rlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~ 1217 (1230)
||+||||+++||+||||||||||||++||+.|.+.|.+..++||+|+||||+++++.||||+|||+|+|+|+|+|+||++
T Consensus 617 rlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 617 RLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred HHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHhhhcC
Q 000909 1218 MRGAFFNLATLQS 1230 (1230)
Q Consensus 1218 ~~g~y~~l~~~q~ 1230 (1230)
.+|.|+++|+.|.
T Consensus 697 ~~g~y~~l~~~q~ 709 (709)
T COG2274 697 QGGLYARLYQQQE 709 (709)
T ss_pred hcChHHHHHhccC
Confidence 9999999999884
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-91 Score=854.37 Aligned_cols=567 Identities=31% Similarity=0.484 Sum_probs=513.8
Q ss_pred hHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHHHHHHHHHH
Q 000909 9 NIGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGLAVMV 88 (1230)
Q Consensus 9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (1230)
.+.++++.+.++++.+ +-.++.+++..++....|++.+.++|.+.... + .+.+....+.++..++...+
T Consensus 141 ~~~~f~~~~~~~~~~l-~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~------~----~~tL~vl~ig~~~~~l~~~~ 209 (709)
T COG2274 141 GLSWFIPLLFKYRRLL-FEVLLASLLLQLLALATPLFSQIVIDKVLPDA------S----RSTLTVLAIGLLLAALFEAL 209 (709)
T ss_pred chHhHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC------c----hhHHHHHHHHHHHHHHHHHH
Confidence 5667777776665543 22333333333333444477889999876431 1 23455556666777788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 000909 89 VAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGL 168 (1230)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~ 168 (1230)
+.+++.++..+.+.++..++-.++|+|++++|++||++ .++| |+++|+. |.+.|+++++..+...+.++.+.++.+
T Consensus 210 l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~-r~~G--e~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l 285 (709)
T COG2274 210 LRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEK-RSVG--EIISRVR-ELEQIREFLTGSILTLIIDLLFALIFL 285 (709)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccC-CChh--hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997 4667 9999997 999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHH
Q 000909 169 AFSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDST 248 (1230)
Q Consensus 169 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 248 (1230)
++|++++|.|++++++.+|+++++..++.+..++..++..+..++.++.+.|+++|+++||+.+.|.++..+|++...+.
T Consensus 286 ~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~ 365 (709)
T COG2274 286 AVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQ 365 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 249 TKLGIKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTEASIAASR 327 (1230)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~r 327 (1230)
.+...+..+.......+. ++..+..++++|+|+++++.|.+|+|.++++.+....+..|+..+...+..+++...+.+|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~r 445 (709)
T COG2274 366 VNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALER 445 (709)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888887777666 6777788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCCCCCCCCcccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 000909 328 IFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 328 i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
+.++++.++|.+.... ....++..|+|+|+||+|+|+.+ ++++|+|+||+|+|||++||||+||||||||+|+|.|+|
T Consensus 446 L~dil~~~~E~~~~~~-~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 446 LGDILDTPPEQEGDKT-LIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred HHHHhcCCcccccccc-cccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 9999998877543221 23445677999999999999864 347999999999999999999999999999999999999
Q ss_pred CCCCceEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchh
Q 000909 408 DADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKV 487 (1230)
Q Consensus 408 ~~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~ 487 (1230)
+|++|+|++||.|++++++.++|++||||+||+.||+|||+|||++++|+.++|++++||+.+++|+||+++|.||+|.+
T Consensus 524 ~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v 603 (709)
T COG2274 524 KPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPV 603 (709)
T ss_pred CCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEeCC
Q 000909 488 GERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNG 567 (1230)
Q Consensus 488 ~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G 567 (1230)
||+|.+||||||||++||||+++||+||||||||||||+++|+.|.+.+.+...|+|+|+||||++++++||||+|||+|
T Consensus 604 ~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~G 683 (709)
T COG2274 604 GEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQG 683 (709)
T ss_pred ccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecChhHHHhhcCcHHHHHHHHh
Q 000909 568 CLVEIGTHNDLINRIDGHYAKMAKLQ 593 (1230)
Q Consensus 568 ~i~~~g~~~~l~~~~~~~~~~~~~~~ 593 (1230)
+|+++|+|+|+++. +|.|.+++..|
T Consensus 684 kiv~~gs~~ell~~-~g~y~~l~~~q 708 (709)
T COG2274 684 KIVEQGSHEELLAQ-GGLYARLYQQQ 708 (709)
T ss_pred ceeccCCHHHHHHh-cChHHHHHhcc
Confidence 99999999999996 99999998765
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-88 Score=838.60 Aligned_cols=553 Identities=35% Similarity=0.569 Sum_probs=495.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 660 EWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNFAYMGGRLTKR 739 (1230)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1230)
.+ ...++.++..+........+++++..++... ........+...++++.++..++.++..+...+.+.+...+
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 86 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALL-----ADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVAD 86 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 5555666666666666666777777776655 11122334445555566677788888888888888999999
Q ss_pred HHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 740 IRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPL 819 (1230)
Q Consensus 740 l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~ 819 (1230)
+|.+++++++++|++||+ .+++|++++|+++|++.++..+......+...+..+++.+++++..+|.+++++++..|+
T Consensus 87 lr~~~~~~l~~~~~~~~~--~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~ 164 (567)
T COG1132 87 LRRDLFEKLLRLPLSFFD--KAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPL 164 (567)
T ss_pred HHHHHHHHHHhCCHHHhC--cCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999998 678999999999999999999988866666678888999999999999999999999888
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 820 TILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQC 899 (1230)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 899 (1230)
+.+...+..+......+..++..++..+.+.|.+.|++++|+|+.++...+++++..+...+...+..+..+...++...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (567)
T COG1132 165 LALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLL 244 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777765577778888888899999999999999999999999999999999998888888878888888888899
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCC
Q 000909 900 LTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDG 979 (1230)
Q Consensus 900 ~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~ 979 (1230)
+..+..++++++|+.++..+.+++|.+.+++.+......++..+......+..+..+++|++++++.+++..+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~----- 319 (567)
T COG1132 245 LSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPP----- 319 (567)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999866533220
Q ss_pred CCCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecC
Q 000909 980 TRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVR 1059 (1230)
Q Consensus 980 ~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~ 1059 (1230)
.+.....|+|+|+||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|+|||+||+
T Consensus 320 ---~~~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~ 394 (567)
T COG1132 320 ---DPLKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIR 394 (567)
T ss_pred ---CCCCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehh
Confidence 012335578999999999973 457999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHhhcceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHH
Q 000909 1060 ELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRI 1139 (1230)
Q Consensus 1060 ~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 1139 (1230)
++++++||++|++|||||+||+|||+|||++|+|+++|||+++|++.++++|||+++|+||||.|||+|.+|||||||||
T Consensus 395 ~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrl 474 (567)
T COG1132 395 DISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRL 474 (567)
T ss_pred hcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEEEEecCHhHHhhcc
Q 000909 1140 AIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMR 1219 (1230)
Q Consensus 1140 alARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~ 1219 (1230)
|||||++++|||||||||||+||++||+.|++++++..++||+|+||||++|+++||+|+|||+|+|+|+|+|+||++++
T Consensus 475 aiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~ 554 (567)
T COG1132 475 AIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKG 554 (567)
T ss_pred HHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcC
Confidence 99999999999999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred cccHHHhhhcC
Q 000909 1220 GAFFNLATLQS 1230 (1230)
Q Consensus 1220 g~y~~l~~~q~ 1230 (1230)
|.|++||+.|.
T Consensus 555 g~y~~l~~~~~ 565 (567)
T COG1132 555 GLYARLYQAQG 565 (567)
T ss_pred CHHHHHHHHhh
Confidence 99999999873
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-87 Score=831.72 Aligned_cols=567 Identities=22% Similarity=0.345 Sum_probs=485.3
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 650 FFRLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNF 729 (1230)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1230)
+++++++.+++++.+.+++++.++.....+..++.++.+++........ ......+...++++.++..++.+++.++.
T Consensus 10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (588)
T PRK11174 10 TRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP--REALLPPFILLILLFVLRALLAWLRERVG 87 (588)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888888888888888888888888888888765421111 11223344445556667778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 730 AYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKL 809 (1230)
Q Consensus 730 ~~~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 809 (1230)
...+.++..++|.++|++++++|+.||+ ++++|++++|+++|++.++..+...+..++..++.+++++++++.++|.+
T Consensus 88 ~~~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 165 (588)
T PRK11174 88 FKAGQHIRQQIRQQVLDKLQQLGPAWIQ--GKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAA 165 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhhc--cCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 67899999999999999999999999999888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 810 AVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWL 889 (1230)
Q Consensus 810 ~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (1230)
++++++++|+.++......+..+...++..+..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+..+.
T Consensus 166 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 245 (588)
T PRK11174 166 GLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRM 245 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988887777777777777777788888899999999999999999999999999999999888887777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 890 AGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDV---------FKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASV 960 (1230)
Q Consensus 890 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri 960 (1230)
.....++...+..+...++.++++..+ .|.+++|.+ +.+..+...+..++..+...+.++.++..+.+|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri 324 (588)
T PRK11174 246 AFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESL 324 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666665555555555555555544 377777754 1112333445678888899999999999999999
Q ss_pred HHHHccCCCCCCCCCCCCCCCCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHH
Q 000909 961 FKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLI 1040 (1230)
Q Consensus 961 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL 1040 (1230)
.++++.+++.+.. +. ...+.+..++|+|+||+|.|++ ++++|+|+||+|+|||++|||||||||||||+++|
T Consensus 325 ~~~l~~~~~~~~~-----~~-~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL 396 (588)
T PRK11174 325 VTFLETPLAHPQQ-----GE-KELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNAL 396 (588)
T ss_pred HHHHcCCCcccCC-----Cc-cccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 9999876532211 00 0011112457999999998863 35699999999999999999999999999999999
Q ss_pred hccccCCCCeEEECCeecCCCChHHHhhcceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccc
Q 000909 1041 QRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGY 1120 (1230)
Q Consensus 1041 ~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gl 1120 (1230)
+|+| |++|+|++||+|+++++.+++|++|+||||||+||+|||||||.+|+|+++|||+++|++.|++++||+++|+||
T Consensus 397 ~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~ 475 (588)
T PRK11174 397 LGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGL 475 (588)
T ss_pred hcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhccccc
Confidence 9999 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEE
Q 000909 1121 ETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIAL 1200 (1230)
Q Consensus 1121 dt~vge~G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~v 1200 (1230)
||.|||+|.+||||||||||||||++++|+|||||||||+||++||+.|+++|++..+++|+|+||||++++..||+|+|
T Consensus 476 dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iiv 555 (588)
T PRK11174 476 DTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWV 555 (588)
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred EeCcEEEEecCHhHHhhcccccHHHhhhcC
Q 000909 1201 VADGRVVERGTYAQLTHMRGAFFNLATLQS 1230 (1230)
Q Consensus 1201 l~~G~Ive~Gt~~eLl~~~g~y~~l~~~q~ 1230 (1230)
|++|+|+|.|+|+||++++|.|+++++.|.
T Consensus 556 l~~G~i~e~G~~~eL~~~~~~y~~l~~~q~ 585 (588)
T PRK11174 556 MQDGQIVQQGDYAELSQAGGLFATLLAHRQ 585 (588)
T ss_pred EeCCeEeecCCHHHHHhcchHHHHHHHHhh
Confidence 999999999999999999999999998873
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-86 Score=830.30 Aligned_cols=576 Identities=20% Similarity=0.242 Sum_probs=488.8
Q ss_pred CccccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHH
Q 000909 1 MRREKNKNNIGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFV 80 (1230)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1230)
|.+++.+..++++++|++++++. ++++++++++..++.+..|+++++++|.+.... .+. ..+..+...++
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-----~~~----~~~~~~~~~~~ 70 (588)
T PRK11174 1 MDKSRQKELTRWLKQQSKPAKRW-LNLSILLGFLSGLLLIAQAWLLATILQALIIEN-----IPR----EALLPPFILLI 70 (588)
T ss_pred CCccccchhhHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----Cch----hHHHHHHHHHH
Confidence 77777788888999999887654 566777777777777788889999999753210 011 12223333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHH
Q 000909 81 YLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMN 160 (1230)
Q Consensus 81 ~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~ 160 (1230)
++.++..++.++..++..+.+.++..++|.++|+|++++|+++|++ .++| ++++|+++|++.+++++.+.++.++..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~-~~~g--~l~s~~~~dv~~i~~~~~~~~~~~~~~ 147 (588)
T PRK11174 71 LLFVLRALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQG-KPAG--SWATLVLEQVEDMHDFYARYLPQMALA 147 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhcc-CCHH--HHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5556677888899999999999999999999999999999999996 5556 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHH
Q 000909 161 ASVFISGLAFSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDR 240 (1230)
Q Consensus 161 ~~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~ 240 (1230)
++.+++.++++++++|.+++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++
T Consensus 148 ~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~ 227 (588)
T PRK11174 148 VLVPLLILIAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETES 227 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHH
Confidence 99999999999999999999999999998888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHH---------HHHHHHHHHHHHHHHH
Q 000909 241 YEAILDSTTKLGIKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKGETGGKI---------YAAGISFILSGLSLGS 310 (1230)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~---------~~~~~~~~~~~~~l~~ 310 (1230)
|++..++..+...+..+......+.. .+..+..+++.+++++.+ .|.+++|.+ +++..+......|+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~ 306 (588)
T PRK11174 228 IRSASEDFRQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRD 306 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHH
Confidence 99999998888777666655544443 223333333334444443 377777754 1222334445678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEc
Q 000909 311 ALPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVG 390 (1230)
Q Consensus 311 ~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG 390 (1230)
+...+..++++..+.+|+.++++.+++.+... ....+....++|+|+||+|.|++ ++++|+|+||+|+|||++||||
T Consensus 307 l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG 383 (588)
T PRK11174 307 LGTFYHAKAQAVGAAESLVTFLETPLAHPQQG-EKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVG 383 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC-ccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEEC
Confidence 88889999999999999999998654322111 11111112357999999988763 3569999999999999999999
Q ss_pred CCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHH
Q 000909 391 ASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAA 470 (1230)
Q Consensus 391 ~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~ 470 (1230)
|||||||||+++|+|+| |++|+|.+||+|+++++.+++|++|+||+|||+||++||+|||++|+|++++++++++|+.+
T Consensus 384 ~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a 462 (588)
T PRK11174 384 PSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENA 462 (588)
T ss_pred CCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHh
Confidence 99999999999999999 99999999999999999999999999999999999999999999999899999999999999
Q ss_pred hHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEec
Q 000909 471 NAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAH 550 (1230)
Q Consensus 471 ~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH 550 (1230)
+++++++++|+|+||.+||+|.+|||||||||+||||+++||+|||||||||+||+++++.+++.+++..+++|+|+|||
T Consensus 463 ~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItH 542 (588)
T PRK11174 463 WVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTH 542 (588)
T ss_pred CHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred CchhhhccCEEEEEeCCeEEEecChhHHHhhcCcHHHHHHHHhhc
Q 000909 551 KLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQ 595 (1230)
Q Consensus 551 ~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 595 (1230)
|++++++||+|++|++|+++|+|+|+||+++ ++.|++++..|.+
T Consensus 543 rl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~-~~~y~~l~~~q~~ 586 (588)
T PRK11174 543 QLEDLAQWDQIWVMQDGQIVQQGDYAELSQA-GGLFATLLAHRQE 586 (588)
T ss_pred ChHHHHhCCEEEEEeCCeEeecCCHHHHHhc-chHHHHHHHHhhc
Confidence 9999999999999999999999999999985 8899999987653
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-86 Score=837.49 Aligned_cols=564 Identities=33% Similarity=0.522 Sum_probs=503.3
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 649 SFFRLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYN 728 (1230)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1230)
.+++++++.++.++.+...+++..+........+++.+.+++....... ..........++++.++..++.+++.++
T Consensus 148 ~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 224 (711)
T TIGR00958 148 LLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKG---PPALASAIFFMCLLSIASSVSAGLRGGS 224 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777888888888777777777777777888888888876653211 1112223334455566677888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 729 FAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWK 808 (1230)
Q Consensus 729 ~~~~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 808 (1230)
+.+.+.++..++|.++|++++++|+.||+ ++++|++++|+++|++.++..+...+..++..+..+++++++++.++|.
T Consensus 225 ~~~~~~~~~~~lr~~l~~~ll~~~~~~f~--~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~ 302 (711)
T TIGR00958 225 FNYTMARINLRIREDLFRSLLRQDLGFFD--ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPR 302 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999998 6789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 809 LAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSW 888 (1230)
Q Consensus 809 l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 888 (1230)
+++++++..|+.++...+..+......++.++..++..+.+.|.+.|+++||+|+.|+.+.++|++..++..+...+...
T Consensus 303 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 382 (711)
T TIGR00958 303 LTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKAL 382 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888878887888888888899999999999999999999999999999999998888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 000909 889 LAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQS 968 (1230)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~ 968 (1230)
...........+..+..++++++|++++..|.++.|.++++..+......++..+...+.++.++..+.+|++++++.++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 462 (711)
T TIGR00958 383 AYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKP 462 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 76666667777777778888999999999999999999999999999999999999999999999999999999998766
Q ss_pred CCCCCCCCCCCCCCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCC
Q 000909 969 LIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQ 1048 (1230)
Q Consensus 969 ~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~ 1048 (1230)
+.+.. . ...+++..|.|+|+||+|+||+++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++
T Consensus 463 ~~~~~-----~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~ 535 (711)
T TIGR00958 463 NIPLT-----G--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTG 535 (711)
T ss_pred CCCCC-----C--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCC
Confidence 53321 0 1112234678999999999987666689999999999999999999999999999999999999999
Q ss_pred CeEEECCeecCCCChHHHhhcceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCC
Q 000909 1049 GSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERG 1128 (1230)
Q Consensus 1049 G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G 1128 (1230)
|+|++||+|+++++.+++|++|+||||||++|+|||||||.+|+++.+||++++|++.++++++++++|+||||.+||+|
T Consensus 536 G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G 615 (711)
T TIGR00958 536 GQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKG 615 (711)
T ss_pred CEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCC
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEEEE
Q 000909 1129 VQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVE 1208 (1230)
Q Consensus 1129 ~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive 1208 (1230)
.+||||||||||||||++++|+|||||||||+||++||+.|++ ....+++|+|+||||++++..||+|+||++|+|+|
T Consensus 616 ~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive 693 (711)
T TIGR00958 616 SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVE 693 (711)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999 33457999999999999999999999999999999
Q ss_pred ecCHhHHhhcccccHHHh
Q 000909 1209 RGTYAQLTHMRGAFFNLA 1226 (1230)
Q Consensus 1209 ~Gt~~eLl~~~g~y~~l~ 1226 (1230)
.|+|+||++++|.|++|+
T Consensus 694 ~Gt~~eL~~~~~~y~~lv 711 (711)
T TIGR00958 694 MGTHKQLMEDQGCYKHLV 711 (711)
T ss_pred eeCHHHHHhCCCchHhcC
Confidence 999999999999999874
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-84 Score=824.60 Aligned_cols=562 Identities=27% Similarity=0.354 Sum_probs=493.7
Q ss_pred HHHHHhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 650 FFRLLSL-NAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYN 728 (1230)
Q Consensus 650 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1230)
++++++. .++.++.+...++++++........++.+..+++...... .......+.+.++++.++..++.+++.++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 199 (686)
T TIGR03797 123 LRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDA---DRSLLVQIALALLAAAVGAAAFQLAQSLA 199 (686)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443 3445555555555566666666666677777776554221 11223344555666667778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 729 FAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWK 808 (1230)
Q Consensus 729 ~~~~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 808 (1230)
....+.++..++|.++|++++++|+.||+ ++++|++++|++ |++.+++.+...+...+.....+++++++++.++|.
T Consensus 200 ~~~~~~~~~~~l~~~~~~~ll~~~~~~~~--~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (686)
T TIGR03797 200 VLRLETRMDASLQAAVWDRLLRLPVSFFR--QYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWK 276 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997 788999999997 799999988877777676666677788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 809 LAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSW 888 (1230)
Q Consensus 809 l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 888 (1230)
++++++++.|+.+++.++..+......++..+..++..+.+.|.+.|+++||++|.|+++.++|++..++..+...+...
T Consensus 277 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 356 (686)
T TIGR03797 277 LALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQR 356 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888887777777777788888888889999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 000909 889 LAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQS 968 (1230)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~ 968 (1230)
.......+...+..+..++++|+|++++..|.+|.|.++++..+...+..++..+...+.++.++..+.+|+.++++.++
T Consensus 357 ~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 436 (686)
T TIGR03797 357 IENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALP 436 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCCCCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCC
Q 000909 969 LIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQ 1048 (1230)
Q Consensus 969 ~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~ 1048 (1230)
+.+.. . ..+.+..|.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++
T Consensus 437 e~~~~------~--~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~ 507 (686)
T TIGR03797 437 EVDEA------K--TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPES 507 (686)
T ss_pred ccccC------c--CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 43211 0 1112245789999999999743 4579999999999999999999999999999999999999999
Q ss_pred CeEEECCeecCCCChHHHhhcceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCC
Q 000909 1049 GSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERG 1128 (1230)
Q Consensus 1049 G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G 1128 (1230)
|+|++||+|+++++.+++|++|+||||||++|+|||||||.+++| ++++++++|++.++++++++++|+||||++||+|
T Consensus 508 G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G 586 (686)
T TIGR03797 508 GSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGG 586 (686)
T ss_pred CEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCC
Confidence 999999999999999999999999999999999999999999988 9999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEEEE
Q 000909 1129 VQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVE 1208 (1230)
Q Consensus 1129 ~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive 1208 (1230)
.+|||||||||+||||++++|+|||||||||+||++||+.+++.|++. ++|+|+||||+++++.||+|+||++|+|+|
T Consensus 587 ~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~ 664 (686)
T TIGR03797 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQ 664 (686)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999886 789999999999999999999999999999
Q ss_pred ecCHhHHhhcccccHHHhhhc
Q 000909 1209 RGTYAQLTHMRGAFFNLATLQ 1229 (1230)
Q Consensus 1209 ~Gt~~eLl~~~g~y~~l~~~q 1229 (1230)
.|+|+||++++|.|++|++.|
T Consensus 665 ~G~~~~Ll~~~~~y~~l~~~q 685 (686)
T TIGR03797 665 QGTYDELMAREGLFAQLARRQ 685 (686)
T ss_pred ECCHHHHHhCCcHHHHHHHhc
Confidence 999999999999999999877
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-84 Score=806.71 Aligned_cols=561 Identities=36% Similarity=0.549 Sum_probs=498.2
Q ss_pred HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Q 000909 10 IGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGLAVMVV 89 (1230)
Q Consensus 10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (1230)
+++++++.+ .+ .+++++++.++..+.....|++++.++|.+... ......+..+++++.++..++
T Consensus 4 ~~~l~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------------~~~~~~~~~~~~~~~~~~~v~ 68 (567)
T COG1132 4 LRRLLKYLK--YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD------------LGELLELLLLLLLLALLGGVL 68 (567)
T ss_pred HHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------------HHHHHHHHHHHHHHHHHHHHH
Confidence 445555554 34 555666666666667777778888899876411 122333444455555567778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 000909 90 AFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLA 169 (1230)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~ 169 (1230)
.++..++..+.+.++..++|.+++++++++|+++|++ .++| ++++|+++|++.++..+.+....+...+.++++.++
T Consensus 69 ~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~-~~~g--~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (567)
T COG1132 69 RALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDK-AKSG--DLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLV 145 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCc-CCcc--hHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 8888888888889999999999999999999999997 5666 999999999999999999886666667888999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHH
Q 000909 170 FSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTT 249 (1230)
Q Consensus 170 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 249 (1230)
+++..+|.+++++++..|++.+...++.++.++..++.++..++.++.+.|.++|+++||+|+.++...+++++..++..
T Consensus 146 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~ 225 (567)
T COG1132 146 LLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELR 225 (567)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888888889999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 250 KLGIKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTEASIAASRI 328 (1230)
Q Consensus 250 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri 328 (1230)
+...+.....+...+.. .+......+++++|++.+..+.+++|.+++++.+......|+..+...+..++.+..+.+|+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri 305 (567)
T COG1132 226 RANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERL 305 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777777776655 66667778888999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCCCCCCcccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 000909 329 FDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 329 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
+++++.+++..+.+.. .....++|+|+||+|+|++ ++++|+|+||+++|||++||||||||||||++++|+|+|+
T Consensus 306 ~~~l~~~~~~~~~~~~---~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~ 380 (567)
T COG1132 306 FELLDEEPEVEDPPDP---LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD 380 (567)
T ss_pred HHHHcCCccccCCCCC---CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 9999986654332211 2334578999999999974 3569999999999999999999999999999999999999
Q ss_pred CCCceEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhc
Q 000909 409 ADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVG 488 (1230)
Q Consensus 409 ~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~ 488 (1230)
|++|+|++||+|+++++.+++|++|++|||||+||++||+|||.+|++++++++++++|+.++++|+++++|+||||.+|
T Consensus 381 ~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vg 460 (567)
T COG1132 381 PTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVG 460 (567)
T ss_pred CCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEeCCe
Q 000909 489 ERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGC 568 (1230)
Q Consensus 489 ~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~ 568 (1230)
|+|.+||||||||++||||+++||+|||||||||+||++||+.+++.+.+..++||+|+||||++++++||+|+|||+|+
T Consensus 461 e~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~ 540 (567)
T COG1132 461 ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGR 540 (567)
T ss_pred CCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred EEEecChhHHHhhcCcHHHHHHHHhh
Q 000909 569 LVEIGTHNDLINRIDGHYAKMAKLQR 594 (1230)
Q Consensus 569 i~~~g~~~~l~~~~~~~~~~~~~~~~ 594 (1230)
|+|.|+|+||+++ +|.|++++..|.
T Consensus 541 i~e~G~h~eLl~~-~g~y~~l~~~~~ 565 (567)
T COG1132 541 IVERGTHEELLAK-GGLYARLYQAQG 565 (567)
T ss_pred EEEecCHHHHHHc-CCHHHHHHHHhh
Confidence 9999999999996 999999998765
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-85 Score=866.23 Aligned_cols=571 Identities=30% Similarity=0.465 Sum_probs=486.7
Q ss_pred hHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHHHHHHHHHH
Q 000909 9 NIGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGLAVMV 88 (1230)
Q Consensus 9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (1230)
.+.+++++++++++. ++++++++++.+++.|+++++++.+++.+... .........+.+++++++++..+
T Consensus 812 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---------~~~~~~~~~~~l~~~~~~i~~~~ 881 (1466)
T PTZ00265 812 NLRIVYREIFSYKKD-VTIIALSILVAGGLYPVFALLYAKYVSTLFDF---------ANLEANSNKYSLYILVIAIAMFI 881 (1466)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777665543 67788888899999999999999999976421 00112234456667777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 000909 89 VAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGL 168 (1230)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~ 168 (1230)
+.++..++..++++++..++|.++|++++++|++||++ ...++|++++|+++|++.+++++...+..++..++++++++
T Consensus 882 ~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~-~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~ 960 (1466)
T PTZ00265 882 SETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQ-DKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSM 960 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999985 22344599999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHccHHHHHH
Q 000909 169 AFSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLS-KK-----------------AYKEYGKANAIVEQALSSIKTVYS 230 (1230)
Q Consensus 169 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~e~l~gi~~ik~ 230 (1230)
+++++++|.++++++++++++ ...+.++.+... ++ ..+..++.+..++|.++|+++||+
T Consensus 961 ~~~~~~~~~l~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka 1037 (1466)
T PTZ00265 961 VMSFYFCPIVAAVLTGTYFIF---MRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVII 1037 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHH
Confidence 999999999887765444333 333333332211 11 123356778899999999999999
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH
Q 000909 231 FSAERRIIDRYEAILDSTTKLGIKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLG 309 (1230)
Q Consensus 231 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~ 309 (1230)
|+.|+.+.++|++..+...+...+.....++..++. .+..+..++++|+|++++..|.+++|++++++.++.....++.
T Consensus 1038 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~ 1117 (1466)
T PTZ00265 1038 YGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAG 1117 (1466)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888888888877777766 5566677889999999999999999999998877666556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcc---cCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEE
Q 000909 310 SALPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLV---LDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSV 386 (1230)
Q Consensus 310 ~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~---~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~ 386 (1230)
.+...+..++++.++++|++++++.+++.+..+..... ++...+.|+|+||+|+||++++.++|+|+||+|+||+++
T Consensus 1118 ~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~v 1197 (1466)
T PTZ00265 1118 KLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTT 1197 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEE
Confidence 88888999999999999999999876543221111111 123457899999999998765567999999999999999
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCC------------------------------------------------------CCc
Q 000909 387 ALVGASGSGKSTAIALVQRFYDA------------------------------------------------------DDG 412 (1230)
Q Consensus 387 ~ivG~sGsGKSTl~~ll~~~~~~------------------------------------------------------~~G 412 (1230)
|||||||||||||+++|+|+|+| ++|
T Consensus 1198 AIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 1277 (1466)
T PTZ00265 1198 AIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSG 1277 (1466)
T ss_pred EEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCC
Confidence 99999999999999999999999 699
Q ss_pred eEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCC
Q 000909 413 IVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGA 492 (1230)
Q Consensus 413 ~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~ 492 (1230)
+|++||+|+++++.+++|++||||+|||+||++||+|||.+|.++++++++++||+.+++++||.+||+||||.+||+|.
T Consensus 1278 ~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~ 1357 (1466)
T PTZ00265 1278 KILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGK 1357 (1466)
T ss_pred eEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhccCEEEEEeC----
Q 000909 493 LLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRNADLIAVVDN---- 566 (1230)
Q Consensus 493 ~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~~l~~---- 566 (1230)
+|||||||||||||||+++|+||||||||||||+++|+.|+++|.+.. +++|+|+||||++++++||+|+||++
T Consensus 1358 ~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~ 1437 (1466)
T PTZ00265 1358 SLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRT 1437 (1466)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCC
Confidence 999999999999999999999999999999999999999999999873 69999999999999999999999999
Q ss_pred CeEE-EecChhHHHhhcCcHHHHHHHHh
Q 000909 567 GCLV-EIGTHNDLINRIDGHYAKMAKLQ 593 (1230)
Q Consensus 567 G~i~-~~g~~~~l~~~~~~~~~~~~~~~ 593 (1230)
|+++ |+|+|+||+++.+|.|+++++.|
T Consensus 1438 G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1438 GSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred CCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence 9955 89999999974489999998765
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-84 Score=823.43 Aligned_cols=563 Identities=22% Similarity=0.349 Sum_probs=496.3
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 650 FFRLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNF 729 (1230)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1230)
+++++.+.++.++.+...++++++........++++..+++....... ......+...++++.++..++.+++.++.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (708)
T TIGR01193 144 LLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM---MGTLGIISIGLIIAYIIQQILSYIQIFLL 220 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666666666667777788887776553211 12233344445555667778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 730 AYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKL 809 (1230)
Q Consensus 730 ~~~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 809 (1230)
...+.++..++|.++|++++++|+.||+ ++++|++++|++ |.+.+.+.+...+...+..+..+++.+++++.++|.+
T Consensus 221 ~~~~~~~~~~l~~~~~~~ll~l~~~~f~--~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 297 (708)
T TIGR01193 221 NVLGQRLSIDIILSYIKHLFELPMSFFS--TRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLL 297 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999998 688999999998 8999998887777777777777777778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 810 AVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWL 889 (1230)
Q Consensus 810 ~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (1230)
++++++++|+.+++.++..+..++..++..+..++..+.+.|++.|+++||++|.|+.+.++|++...+..+...+..+.
T Consensus 298 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 377 (708)
T TIGR01193 298 FLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKA 377 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888888888888888999999999999999999999999999999999888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q 000909 890 AGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSL 969 (1230)
Q Consensus 890 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~ 969 (1230)
......+...+..+..++++|+|++++..|.+|+|.++++..+...+..|+..+...+.++..+..+++|+.++++.+++
T Consensus 378 ~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e 457 (708)
T TIGR01193 378 DQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSE 457 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 77777777777788888999999999999999999999999999999999999999999999999999999999987665
Q ss_pred CCCCCCCCCCCCCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCC
Q 000909 970 IPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQG 1049 (1230)
Q Consensus 970 ~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G 1049 (1230)
.+... .....++..|+|+|+||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|
T Consensus 458 ~~~~~------~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G 529 (708)
T TIGR01193 458 FINKK------KRTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSG 529 (708)
T ss_pred ccccc------cccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCc
Confidence 43210 00112334678999999999973 34799999999999999999999999999999999999999999
Q ss_pred eEEECCeecCCCChHHHhhcceEEcccccCCcccHHHHhccC-CCCCCHHHHHHHHHHhchHHHHHhccccccccccCCC
Q 000909 1050 SVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFG-KLDASENEVVEAARAANAHEFISSLKDGYETECGERG 1128 (1230)
Q Consensus 1050 ~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g-~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G 1128 (1230)
+|++||+|+++++.+++|++|+||||||+||+|||||||.++ +|+++++++++|++.++++++++++|+||||.+||+|
T Consensus 530 ~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G 609 (708)
T TIGR01193 530 EILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEG 609 (708)
T ss_pred EEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCC
Confidence 999999999999999999999999999999999999999998 5789999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEEEE
Q 000909 1129 VQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVE 1208 (1230)
Q Consensus 1129 ~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive 1208 (1230)
.+|||||||||+||||++++|+|||||||||+||++||+.+++.|++. +++|+|+||||+++++.||+|+||++|+++|
T Consensus 610 ~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~ 688 (708)
T TIGR01193 610 SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIE 688 (708)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999974 7899999999999999999999999999999
Q ss_pred ecCHhHHhhcccccHHHhh
Q 000909 1209 RGTYAQLTHMRGAFFNLAT 1227 (1230)
Q Consensus 1209 ~Gt~~eLl~~~g~y~~l~~ 1227 (1230)
.|+|+||++++|.|++|++
T Consensus 689 ~G~~~~L~~~~~~y~~l~~ 707 (708)
T TIGR01193 689 QGSHDELLDRNGFYASLIH 707 (708)
T ss_pred ECCHHHHHhcCCcHHHHhh
Confidence 9999999999999999986
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-84 Score=816.00 Aligned_cols=563 Identities=35% Similarity=0.541 Sum_probs=493.1
Q ss_pred chHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHHHHHHHHH
Q 000909 8 NNIGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGLAVM 87 (1230)
Q Consensus 8 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (1230)
..+++++++.++.++ .+++++++.++..+.....|++++.++|.+.... +. .......++++++.++..
T Consensus 147 ~~~~~l~~~~~~~~~-~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~------~~----~~~~~~~~~~~~~~~~~~ 215 (711)
T TIGR00958 147 DLLFRLLGLSGRDWP-WLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDK------GP----PALASAIFFMCLLSIASS 215 (711)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CH----HHHHHHHHHHHHHHHHHH
Confidence 357788888876544 4556666667777777777889999999775321 11 122222333444555667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHH
Q 000909 88 VVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISG 167 (1230)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~ 167 (1230)
++.+++.++..+.+.++..++|.++|++++++|+++|++ .++| ++++|+++|++.+++.+...+..++.+++.+++.
T Consensus 216 ~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~-~~~G--~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~ 292 (711)
T TIGR00958 216 VSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDE-NKTG--ELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGL 292 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC-CCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888889999999999999999999999999999996 5666 9999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHH
Q 000909 168 LAFSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDS 247 (1230)
Q Consensus 168 ~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~ 247 (1230)
+++++.++|.+++++++.+|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|++..++
T Consensus 293 ~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~ 372 (711)
T TIGR00958 293 LGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEE 372 (711)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 248 TTKLGIKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTEASIAAS 326 (1230)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ 326 (1230)
..+...+.....+...... .+.....++++++|++++..|.+++|.++++..+......|+..+...+..++++..+.+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ 452 (711)
T TIGR00958 373 TLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASE 452 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777766655544433 444455667778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCCCCCCcccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 000909 327 RIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRF 406 (1230)
Q Consensus 327 ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~ 406 (1230)
|++++++.+++.+... ...+.+..+.|+|+||+|+||+++++++|+|+||+|+|||++|||||||||||||+++|+|+
T Consensus 453 ri~~~l~~~~~~~~~~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl 530 (711)
T TIGR00958 453 KVFEYLDRKPNIPLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNL 530 (711)
T ss_pred HHHHHhCCCCCCCCCC--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 9999998765533221 11222345689999999999865556799999999999999999999999999999999999
Q ss_pred CCCCCceEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccch
Q 000909 407 YDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETK 486 (1230)
Q Consensus 407 ~~~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 486 (1230)
|+|++|+|++||+|+++++.+++|++|+||+|||++|++||+|||.+|.++.++++++++++.++++++++++|+|+||.
T Consensus 531 ~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ 610 (711)
T TIGR00958 531 YQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTE 610 (711)
T ss_pred cCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCc
Confidence 99999999999999999999999999999999999999999999999988888999999999999999999999999999
Q ss_pred hcCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEeC
Q 000909 487 VGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDN 566 (1230)
Q Consensus 487 ~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~ 566 (1230)
+||+|.+|||||||||+||||++++|+|+|||||||+||+++|+.+++ ....+++|+|+||||+++++.||+|++|++
T Consensus 611 ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~ 688 (711)
T TIGR00958 611 VGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKK 688 (711)
T ss_pred ccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999998 334478999999999999999999999999
Q ss_pred CeEEEecChhHHHhhcCcHHHHH
Q 000909 567 GCLVEIGTHNDLINRIDGHYAKM 589 (1230)
Q Consensus 567 G~i~~~g~~~~l~~~~~~~~~~~ 589 (1230)
|+|+|+|+|+||+++ ++.|+++
T Consensus 689 G~ive~Gt~~eL~~~-~~~y~~l 710 (711)
T TIGR00958 689 GSVVEMGTHKQLMED-QGCYKHL 710 (711)
T ss_pred CEEEEeeCHHHHHhC-CCchHhc
Confidence 999999999999985 7888765
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-83 Score=795.65 Aligned_cols=566 Identities=21% Similarity=0.314 Sum_probs=486.3
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh-hHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 651 FRLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHS-EMQSRIRTYSLIFCSLSLISLAFNLLQHYNF 729 (1230)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1230)
++++++.+++++.+.+++++..+........++.++.+++........ ........+...+.+++++..++.++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (574)
T PRK11160 5 LPFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVS 84 (574)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777766666666667777777654321110 0000011112234445566778888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 730 AYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKL 809 (1230)
Q Consensus 730 ~~~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 809 (1230)
...+.++..++|.++|++++++|+.||+ +.++|++++|+++|++.++..+...+..++..++.+++++++++.++|.+
T Consensus 85 ~~~~~~~~~~lR~~l~~~l~~~~~~~~~--~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 162 (574)
T PRK11160 85 HDATFRVLTHLRVFTFSKLLPLSPAGLA--RYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTL 162 (574)
T ss_pred HHHHHHHHHHHHHHHHHHhhccChHhhc--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 67899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 810 AVVMIAVQPLTILC-FYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSW 888 (1230)
Q Consensus 810 ~l~~l~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 888 (1230)
+++++++.|+..++ .++..+..+...++.++..++..+.+.|.+.|+++||+||.|+.+.++|++..++..+...+..+
T Consensus 163 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 242 (574)
T PRK11160 163 ALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQAN 242 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888777766543 35555565666777778888889999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 000909 889 LAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVS-TGKVIAEAGSMTSDLAKGSTAVASVFKILDRQ 967 (1230)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~ 967 (1230)
..+...++...+..+..++++++|+++ ..|.++.|.+++++.+... ...++..+...+..+.++..+++|+.++++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~ 321 (574)
T PRK11160 243 LTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQK 321 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 888888888888888888889999988 4899999998887666433 44577788888999999999999999999876
Q ss_pred CCCCCCCCCCCCCCCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCC
Q 000909 968 SLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVE 1047 (1230)
Q Consensus 968 ~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~ 1047 (1230)
++.+.. .. ....+..+.|+|+||+|+||+. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|+
T Consensus 322 ~~~~~~-----~~--~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~ 393 (574)
T PRK11160 322 PEVTFP-----TT--STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ 393 (574)
T ss_pred CCCCCC-----cc--cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 543211 00 0111235789999999999753 346999999999999999999999999999999999999999
Q ss_pred CCeEEECCeecCCCChHHHhhcceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCC
Q 000909 1048 QGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGER 1127 (1230)
Q Consensus 1048 ~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~ 1127 (1230)
+|+|++||+|+++++.+++|++|+||||||++|++||+|||.+++|+.+|+++++|++.+++++++++ |+||||.+||+
T Consensus 394 ~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~ 472 (574)
T PRK11160 394 QGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEG 472 (574)
T ss_pred CceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEEE
Q 000909 1128 GVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVV 1207 (1230)
Q Consensus 1128 G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Iv 1207 (1230)
|.+||||||||+|||||++++|+|||||||||+||++||+.|++.+++..+++|+|+||||++++..||+|++|++|+++
T Consensus 473 g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~ 552 (574)
T PRK11160 473 GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQII 552 (574)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEE
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred EecCHhHHhhcccccHHHhhh
Q 000909 1208 ERGTYAQLTHMRGAFFNLATL 1228 (1230)
Q Consensus 1208 e~Gt~~eLl~~~g~y~~l~~~ 1228 (1230)
|.|+|+||++++|.|++||+.
T Consensus 553 ~~g~~~~l~~~~g~y~~l~~~ 573 (574)
T PRK11160 553 EQGTHQELLAQQGRYYQLKQR 573 (574)
T ss_pred EeCCHHHHHhcCcHHHHHHhh
Confidence 999999999999999999874
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-84 Score=820.99 Aligned_cols=568 Identities=25% Similarity=0.355 Sum_probs=493.8
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 650 FFRLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNF 729 (1230)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1230)
++.++...++.++.+...++++++........+++...+++....... ......+...++++.++..++.+++.++.
T Consensus 142 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (710)
T TIGR03796 142 LRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR---QDWLRPLLLGMGLTALLQGVLTWLQLYYL 218 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555566666666665543211 11223344455556677788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 730 AYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKL 809 (1230)
Q Consensus 730 ~~~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 809 (1230)
...+.++..+++.++|++++++|++||+ ++++|++++|+++| +.++.++...+...+..++.+++.+++++.++|.+
T Consensus 219 ~~~~~~~~~~l~~~~~~~ll~l~~~~~~--~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 295 (710)
T TIGR03796 219 RRLQIKLAVGMSARFLWHILRLPVRFFA--QRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVL 295 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 78999999999988 67888888888888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 810 AVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWL 889 (1230)
Q Consensus 810 ~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (1230)
+++.++..|+.+++.++..+.......+..+..++..+.+.|.+.|+++||++|.|+.+.++|++...+..+...+....
T Consensus 296 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 375 (710)
T TIGR03796 296 TLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVL 375 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888777777777777788888899999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q 000909 890 AGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSL 969 (1230)
Q Consensus 890 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~ 969 (1230)
......+..++..+..++++++|++++..|.+|+|.++++..+...+..++..+...+.++..+..+++|+.++++.+++
T Consensus 376 ~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e 455 (710)
T TIGR03796 376 TQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVD 455 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 88888888888888899999999999999999999999999999999999999999999999999999999999987665
Q ss_pred CCCCCCCCCCCCCCCc-ccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCC
Q 000909 970 IPGSSQAGDGTRGSKL-QKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQ 1048 (1230)
Q Consensus 970 ~~~~~~~~~~~~~~~~-~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~ 1048 (1230)
.+...... ....... ++..|.|+|+||+|+|++. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++
T Consensus 456 ~~~~~~~~-~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~ 533 (710)
T TIGR03796 456 PLLEEEEA-PAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS 533 (710)
T ss_pred cccccccc-cccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 43211000 0000111 2346789999999999853 3579999999999999999999999999999999999999999
Q ss_pred CeEEECCeecCCCChHHHhhcceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCC
Q 000909 1049 GSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERG 1128 (1230)
Q Consensus 1049 G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G 1128 (1230)
|+|++||+|+++++.+++|++|+||||||.+|+|||||||.+++|+++++++++|++.++++++++++|+||||.+||+|
T Consensus 534 G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G 613 (710)
T TIGR03796 534 GEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGG 613 (710)
T ss_pred cEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCC
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEEEE
Q 000909 1129 VQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVE 1208 (1230)
Q Consensus 1129 ~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive 1208 (1230)
.+||||||||||||||++++|+|||||||||+||++||+.+.+.+++ .++|+|+||||++++..||+|+||++|+|+|
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~ 691 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQ 691 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999987 5899999999999999999999999999999
Q ss_pred ecCHhHHhhcccccHHHhh
Q 000909 1209 RGTYAQLTHMRGAFFNLAT 1227 (1230)
Q Consensus 1209 ~Gt~~eLl~~~g~y~~l~~ 1227 (1230)
.|+|+||++++|.|++|++
T Consensus 692 ~G~~~~Ll~~~~~y~~l~~ 710 (710)
T TIGR03796 692 RGTHEELWAVGGAYARLIR 710 (710)
T ss_pred ecCHHHHHHcCCcHHHHhC
Confidence 9999999999999999873
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-87 Score=727.53 Aligned_cols=502 Identities=29% Similarity=0.419 Sum_probs=430.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 717 ISLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVA 796 (1230)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~ 796 (1230)
.+.+++-++.++...+.+..++++..++|+|+..+.+.|+- .+.+|+.+.-..+..+.+. ++...+..+...+.-+.
T Consensus 271 gsG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL--~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~ 347 (790)
T KOG0056|consen 271 GSGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHL--NRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLG 347 (790)
T ss_pred cccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeee--cccccceeehhccCcchhh-HHHHHHhhcccHHHHhh
Confidence 34567777888888899999999999999999999999997 6778999988888887777 66666666666666665
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHH
Q 000909 797 IAMIM-GLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEA 875 (1230)
Q Consensus 797 ~~~~~-~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~ 875 (1230)
++++. ....+|+.+++++.+..+.............+..+++....+++.....+++.+.+|+|-|++|++..++|.+.
T Consensus 348 va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreA 427 (790)
T KOG0056|consen 348 VAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREA 427 (790)
T ss_pred hhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHH
Confidence 55553 44568888887766655555443332233333344555556667788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 876 QEEPRKQARKKSWLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGST 955 (1230)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1230)
...+++...+......+..-....+..+..+....+.++++..+..++|+++.+..+++...+|+..+......++++..
T Consensus 428 il~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfi 507 (790)
T KOG0056|consen 428 ILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFI 507 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhh
Confidence 99988876654433333333333333333333344455667789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCCCCCCCCCCCCCCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHH
Q 000909 956 AVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKST 1035 (1230)
Q Consensus 956 s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKST 1035 (1230)
-+++++++++++++..+.+ ..++....+|.|+|+||+|.|+ |++|||+||||+++||++||+|||||+||||
T Consensus 508 DmEnmfdllkee~eVvd~P------~a~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKST 579 (790)
T KOG0056|consen 508 DMENMFDLLKEEPEVVDLP------GAPPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKST 579 (790)
T ss_pred hHHHHHHHhhcCchhhcCC------CCCCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhH
Confidence 9999999999887765431 1222334679999999999996 5678999999999999999999999999999
Q ss_pred HHHHHhccccCCCCeEEECCeecCCCChHHHhhcceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHh
Q 000909 1036 VIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISS 1115 (1230)
Q Consensus 1036 L~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~ 1115 (1230)
++++|+||||.++|+|+|||+||+++..++||++||+||||.+||++||.+||.|++|++++||+.+|++.|++||.|.+
T Consensus 580 imRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~ 659 (790)
T KOG0056|consen 580 IMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQ 659 (790)
T ss_pred HHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhc
Q 000909 1116 LKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKL 1195 (1230)
Q Consensus 1116 lp~gldt~vge~G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~ 1195 (1230)
+|+||+|.|||+|..||||||||+||||++|++|.|++|||||||||..||+.||.++.+..+++|.|+||||++|+.+|
T Consensus 660 fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnA 739 (790)
T KOG0056|consen 660 FPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNA 739 (790)
T ss_pred CchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCcEEEEecCHhHHhhc-ccccHHHhhhc
Q 000909 1196 DSIALVADGRVVERGTYAQLTHM-RGAFFNLATLQ 1229 (1230)
Q Consensus 1196 D~I~vl~~G~Ive~Gt~~eLl~~-~g~y~~l~~~q 1229 (1230)
|.|+|+++|+|+|.|+|+||+++ +|.|+.||+.|
T Consensus 740 D~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~q 774 (790)
T KOG0056|consen 740 DLILVISNGRIVERGRHEELLKRDGGAYADMWQAQ 774 (790)
T ss_pred cEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHH
Confidence 99999999999999999999999 89999999876
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-83 Score=731.99 Aligned_cols=550 Identities=25% Similarity=0.397 Sum_probs=492.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 668 SLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNFAYMGGRLTKRIRLRMLEK 747 (1230)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 747 (1230)
.++..+.+......+++++..+..++.... ......+...++++.++..++.+.+......++.++...+|..++++
T Consensus 6 ~ll~~l~~i~~i~qa~llA~~l~~l~~~~~---~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~ 82 (559)
T COG4988 6 ALLAVLSGIAIIAQAALLADILTKLIEGQL---FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDK 82 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555666667777666654321 23344556666777778888999999999999999999999999999
Q ss_pred HHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 748 ILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTR 827 (1230)
Q Consensus 748 ~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~ 827 (1230)
+.+.+..|-. ..|+|+..+..+..++.++..+...++.++.+.......++..+..+|..+++++.+.|++.+++++.
T Consensus 83 l~~~gp~~~~--~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilv 160 (559)
T COG4988 83 LAKLGPAFIA--QKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILV 160 (559)
T ss_pred HHhCChhhhc--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999887 77899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 828 KVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMSWAL 907 (1230)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 907 (1230)
....+...++......+..+++.+.+.|+.|+|+||..++..++..+..++.++..++.-+..-...++..++.++..++
T Consensus 161 g~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAl 240 (559)
T COG4988 161 GLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIAL 240 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888889999999999999999999999999999999999999999999988887777777788888888887
Q ss_pred HHHHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCcc
Q 000909 908 DFWYGGTLVQK-GQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQ 986 (1230)
Q Consensus 908 ~~~~g~~lv~~-g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~ 986 (1230)
...+.+..... |.++....+.++....-+..|+..+...+..-..+..+.+.++.+++.+.+.++... .....+
T Consensus 241 vAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~-----~~~~~~ 315 (559)
T COG4988 241 VAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGE-----KAEVAN 315 (559)
T ss_pred HHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcc-----cccccc
Confidence 77766666666 899999888888888889999999999999999999999999999987766443311 001112
Q ss_pred cccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHH
Q 000909 987 KISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWY 1066 (1230)
Q Consensus 987 ~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~l 1066 (1230)
....+|.++|++|+||+. +++++|+||+++||+++||||+||||||||+++|+|+++|++|+|.+||+|.++++.+.|
T Consensus 316 ~~~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~ 393 (559)
T COG4988 316 EPPIEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAW 393 (559)
T ss_pred CCCceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHH
Confidence 223456777999999854 279999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHc
Q 000909 1067 RKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAII 1146 (1230)
Q Consensus 1067 R~~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll 1146 (1230)
|+++++|||+|++|+|||||||.+++|+.+||++++|++++++.+|++. |+|+||++||+|.+|||||+||+++|||++
T Consensus 394 ~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll 472 (559)
T COG4988 394 RKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALL 472 (559)
T ss_pred HhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred cCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEEEEecCHhHHhhcccccHHHh
Q 000909 1147 RNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLA 1226 (1230)
Q Consensus 1147 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~g~y~~l~ 1226 (1230)
++++++|||||||+||.|||+.|++.|.+.++++|||+||||++.+.++|+|+|||+|+++|.|+|++|.+++|.|++|+
T Consensus 473 ~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~ 552 (559)
T COG4988 473 SPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLL 552 (559)
T ss_pred CCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC
Q 000909 1227 TLQS 1230 (1230)
Q Consensus 1227 ~~q~ 1230 (1230)
..|+
T Consensus 553 ~~q~ 556 (559)
T COG4988 553 KQQE 556 (559)
T ss_pred HHHh
Confidence 9874
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-83 Score=807.21 Aligned_cols=563 Identities=27% Similarity=0.367 Sum_probs=492.8
Q ss_pred chHHHHHHh-cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHHHHHHHH
Q 000909 8 NNIGIIFRF-ADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGLAV 86 (1230)
Q Consensus 8 ~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (1230)
..+++++++ +++.++ .++..++++++..++....|++++.++|.+.... + ...++...+.++++.++.
T Consensus 121 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~------~----~~~l~~~~~~~~~~~~~~ 189 (686)
T TIGR03797 121 LGLRDLLRFALRGARR-DLLAILAMGLLGTLLGMLVPIATGILIGTAIPDA------D----RSLLVQIALALLAAAVGA 189 (686)
T ss_pred ccHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC------C----hhHHHHHHHHHHHHHHHH
Confidence 346677776 344433 3445555566666666666788899999765320 1 122333344455556667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHH
Q 000909 87 MVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFIS 166 (1230)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~ 166 (1230)
.++.+++.++..+.+.++..++|.++|+|++++|++||++ .++| ++++|++ |++.+++++...+...+.+...+++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~-~~~g--~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~ 265 (686)
T TIGR03797 190 AAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQ-YSTG--DLASRAM-GISQIRRILSGSTLTTLLSGIFALL 265 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC-CChh--HHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999999999999999999999999996 5666 9999997 8999999998888888888888888
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHH
Q 000909 167 GLAFSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILD 246 (1230)
Q Consensus 167 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~ 246 (1230)
.++++++++|.+++++++++|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+++.|+.+.++|++..+
T Consensus 266 ~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~ 345 (686)
T TIGR03797 266 NLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFS 345 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHH
Confidence 89999999999999999999998888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 247 STTKLGIKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTEASIAA 325 (1230)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~ 325 (1230)
+..+...+..........+. .+..+..++++++|++++..|.+|+|.++++..+...+..|+..+...+..++++..+.
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~ 425 (686)
T TIGR03797 346 RQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLW 425 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888777666555 55556677788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCCCCCCcccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 000909 326 SRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 326 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
+|+.++++.+++.+... ..+....+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+|+|+|
T Consensus 426 ~ri~~~l~~~~e~~~~~---~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~g 501 (686)
T TIGR03797 426 ERAKPILEALPEVDEAK---TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLG 501 (686)
T ss_pred HHHHHHhcCCcccccCc---CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 99999998655432211 1122335689999999999743 3579999999999999999999999999999999999
Q ss_pred CCCCCCceEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccc
Q 000909 406 FYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYET 485 (1230)
Q Consensus 406 ~~~~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t 485 (1230)
+|+|++|+|++||+|+++++.+++|++||||+|||++|++||+|||.++++ .++++++++|+.++++++++++|+|+||
T Consensus 502 l~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt 580 (686)
T TIGR03797 502 FETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHT 580 (686)
T ss_pred CCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccc
Confidence 999999999999999999999999999999999999999999999999988 8999999999999999999999999999
Q ss_pred hhcCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEe
Q 000909 486 KVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVD 565 (1230)
Q Consensus 486 ~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~ 565 (1230)
.+||+|.+|||||||||+||||++++|+|||||||||+||+++|+.+.+.+++. ++|+|+||||+++++.||+|++|+
T Consensus 581 ~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~ 658 (686)
T TIGR03797 581 VISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLD 658 (686)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEE
Confidence 999999999999999999999999999999999999999999999999999886 689999999999999999999999
Q ss_pred CCeEEEecChhHHHhhcCcHHHHHHHHh
Q 000909 566 NGCLVEIGTHNDLINRIDGHYAKMAKLQ 593 (1230)
Q Consensus 566 ~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 593 (1230)
+|+++|.|+|+||+++ ++.|++++..|
T Consensus 659 ~G~iv~~G~~~~Ll~~-~~~y~~l~~~q 685 (686)
T TIGR03797 659 AGRVVQQGTYDELMAR-EGLFAQLARRQ 685 (686)
T ss_pred CCEEEEECCHHHHHhC-CcHHHHHHHhc
Confidence 9999999999999985 89999988754
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-82 Score=792.35 Aligned_cols=565 Identities=30% Similarity=0.495 Sum_probs=491.0
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 651 FRLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNFA 730 (1230)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1230)
..++.+.++.++.+...+++.++........+..+..+++....... ......+...+++++++..++.+++.++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 90 (582)
T PRK11176 14 RRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKAD---RSVLKWMPLVVIGLMILRGITSFISSYCIS 90 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555444444444444444445555555554432211 111122233344456667788888888889
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 731 YMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLA 810 (1230)
Q Consensus 731 ~~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 810 (1230)
+.+.+...++|.++++++++.|..+|+ +.++|++++|+++|++.+...+...+..++..++.+++.+++++.++|.++
T Consensus 91 ~~~~~~~~~lr~~~~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 168 (582)
T PRK11176 91 WVSGKVVMTMRRRLFGHMMGMPVSFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLS 168 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhC--CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999997 678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 811 VVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLA 890 (1230)
Q Consensus 811 l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (1230)
+++++++|+.++..+...+..++...+.++..++....+.|.+.|+++||++|.++.+.++|++..++..+...+.....
T Consensus 169 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (582)
T PRK11176 169 LILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSAS 248 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999889888888777777777778888888888999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 000909 891 GIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLI 970 (1230)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~ 970 (1230)
.....+...+..+...+++++|++++..|.+++|.+++++.+......++..+...+..+.++..+.+|+.++++.+++.
T Consensus 249 ~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~ 328 (582)
T PRK11176 249 SISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEK 328 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 87788888888888888999999999999999999999999988899999999999999999999999999999865442
Q ss_pred CCCCCCCCCCCCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCe
Q 000909 971 PGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050 (1230)
Q Consensus 971 ~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~ 1050 (1230)
+.. ....++..+.|+|+||+|+||++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+
T Consensus 329 ~~~--------~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~ 399 (582)
T PRK11176 329 DEG--------KRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGE 399 (582)
T ss_pred CCC--------CcCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCce
Confidence 211 01112334679999999999753 357999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCChHHHhhcceEEcccccCCcccHHHHhccCCCC-CCHHHHHHHHHHhchHHHHHhccccccccccCCCC
Q 000909 1051 VRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLD-ASENEVVEAARAANAHEFISSLKDGYETECGERGV 1129 (1230)
Q Consensus 1051 I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~~-~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~ 1129 (1230)
|++||+|+++++.+++|++|+||||||++|+|||||||.+|+++ .+|++++++++.++++++++++|+|+||.+||+|.
T Consensus 400 I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~ 479 (582)
T PRK11176 400 ILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGV 479 (582)
T ss_pred EEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCC
Confidence 99999999999999999999999999999999999999999764 79999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEEEEe
Q 000909 1130 QLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVER 1209 (1230)
Q Consensus 1130 ~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~ 1209 (1230)
+|||||||||+||||++++|+|||||||||+||++||+.+.+.|.+..++||+|+||||+++++.||+|++|++|+|+|.
T Consensus 480 ~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~ 559 (582)
T PRK11176 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVER 559 (582)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cCHhHHhhcccccHHHhhhc
Q 000909 1210 GTYAQLTHMRGAFFNLATLQ 1229 (1230)
Q Consensus 1210 Gt~~eLl~~~g~y~~l~~~q 1229 (1230)
|+|++|+++++.|++|++.|
T Consensus 560 g~~~~l~~~~~~y~~l~~~~ 579 (582)
T PRK11176 560 GTHAELLAQNGVYAQLHKMQ 579 (582)
T ss_pred CCHHHHHhCCChHHHHHHHH
Confidence 99999999999999999876
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-82 Score=805.35 Aligned_cols=552 Identities=23% Similarity=0.399 Sum_probs=485.1
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 653 LLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNFAYM 732 (1230)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1230)
++.+.++.++.+...++++++........++++..+++....... ......+...++++.++..++.+++.++..+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (694)
T TIGR03375 138 FWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA---FETLWVLAIGVALAIVFDFVLKTLRSYFLDVA 214 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555666666666667777777765542211 11222334444555666778888999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 733 GGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVV 812 (1230)
Q Consensus 733 ~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~ 812 (1230)
+.++..++|.++|+|++++|+.| + ++++|++++|+ +|++.+++.+...+...+..+..+++.+++++.++|.++++
T Consensus 215 ~~~~~~~l~~~~~~~ll~l~~~~-~--~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 290 (694)
T TIGR03375 215 GKKADLILSAKLFERVLGLRMEA-R--PASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWV 290 (694)
T ss_pred HHHHHHHHHHHHHHHHhCCCccc-C--CCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999998 4 56899999999 89999999988877777777777777777888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 813 MIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGI 892 (1230)
Q Consensus 813 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (1230)
.++.+|+.++..++..+......++..+..++..+.+.|++.|+++||+++.|+.+.++|++..++..+...+.......
T Consensus 291 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (694)
T TIGR03375 291 PLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNL 370 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888888888889999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCC
Q 000909 893 GMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPG 972 (1230)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~ 972 (1230)
...+...+..+..++++|+|++++..|.+|+|.++++..+...+..++..+...+.++..+..+.+|+.++++.+++.+.
T Consensus 371 ~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 450 (694)
T TIGR03375 371 ATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE 450 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 88888888888889999999999999999999999999999999999999999999999999999999999987664322
Q ss_pred CCCCCCCCCCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEE
Q 000909 973 SSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVR 1052 (1230)
Q Consensus 973 ~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~ 1052 (1230)
. ......++..|.|+|+||+|+||+. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+
T Consensus 451 ~------~~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~ 523 (694)
T TIGR03375 451 G------TRFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVL 523 (694)
T ss_pred C------CCCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 1 0111112345789999999999743 45799999999999999999999999999999999999999999999
Q ss_pred ECCeecCCCChHHHhhcceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCC
Q 000909 1053 VDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLS 1132 (1230)
Q Consensus 1053 idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LS 1132 (1230)
+||+|+++++++++|++++||||||++|+|||||||.+++|+++++++++|++.++++++++++|+||||.+||+|.+||
T Consensus 524 idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LS 603 (694)
T TIGR03375 524 LDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLS 603 (694)
T ss_pred ECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEEEEecCH
Q 000909 1133 GGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTY 1212 (1230)
Q Consensus 1133 gGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~ 1212 (1230)
|||||||+||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||+++++.||+|+||++|+|+|.|+|
T Consensus 604 gGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~ 683 (694)
T TIGR03375 604 GGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPK 683 (694)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCH
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred hHHhhc
Q 000909 1213 AQLTHM 1218 (1230)
Q Consensus 1213 ~eLl~~ 1218 (1230)
+||+++
T Consensus 684 ~eLl~~ 689 (694)
T TIGR03375 684 DQVLEA 689 (694)
T ss_pred HHHHHH
Confidence 999976
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-82 Score=789.65 Aligned_cols=564 Identities=25% Similarity=0.383 Sum_probs=477.0
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 650 FFRLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNF 729 (1230)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1230)
++++..+.++.++.+.+.+++..+........++.++.+++.......... .....+.++++++.++..++.+++.++.
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (592)
T PRK10790 11 LKRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPL-GLVAGLAAAYVGLQLLAAGLHYAQSLLF 89 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666666666666666677777777777776543211111 1111223334445556677788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 730 AYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKL 809 (1230)
Q Consensus 730 ~~~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 809 (1230)
...+.+...++|.++|+++++.|++||+ ++++|++++|+++|++.++..+...+..++..+..+++.+++++.++|.+
T Consensus 90 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 167 (592)
T PRK10790 90 NRAAVGVVQQLRTDVMDAALRQPLSAFD--TQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRM 167 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 77899999999999999999999999888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 810 AVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWL 889 (1230)
Q Consensus 810 ~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (1230)
++++++++|+.++...+..+......++..+..++....+.|.+.|+++||+||.++.+.++|.+..++..+...+....
T Consensus 168 ~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (592)
T PRK10790 168 ALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRL 247 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888777777777666667777777778889999999999999999999999999999888777766655554
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 000909 890 AGIG-MGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQS 968 (1230)
Q Consensus 890 ~~~~-~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~ 968 (1230)
.... ..+...+..+...+..++++. +..|.+++|.++++..+...+..++..+...+.++.++..+.+|+.++++.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 326 (592)
T PRK10790 248 DGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPR 326 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4332 233333333332333333333 57999999999999999999999999999999999999999999999998654
Q ss_pred CCCCCCCCCCCCCCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCC
Q 000909 969 LIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQ 1048 (1230)
Q Consensus 969 ~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~ 1048 (1230)
+.+.. ...+...++|+|+||+|+||+ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++
T Consensus 327 ~~~~~---------~~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~ 395 (592)
T PRK10790 327 QQYGN---------DDRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTE 395 (592)
T ss_pred ccCCC---------CccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC
Confidence 32111 011223468999999999974 3469999999999999999999999999999999999999999
Q ss_pred CeEEECCeecCCCChHHHhhcceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCC
Q 000909 1049 GSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERG 1128 (1230)
Q Consensus 1049 G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G 1128 (1230)
|+|++||+|+++++.+.+|++|+||||||.+|+|||||||++++ +++|++++++++.+|++++++++|+||||.+||+|
T Consensus 396 G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g 474 (592)
T PRK10790 396 GEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQG 474 (592)
T ss_pred ceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCC
Confidence 99999999999999999999999999999999999999999998 68999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEEEE
Q 000909 1129 VQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVE 1208 (1230)
Q Consensus 1129 ~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive 1208 (1230)
.+||||||||||||||++++|+|||||||||+||++||+.|++.|++..++||+|+||||++++..||+|++|++|+++|
T Consensus 475 ~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~ 554 (592)
T PRK10790 475 NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVE 554 (592)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred ecCHhHHhhcccccHHHhhhc
Q 000909 1209 RGTYAQLTHMRGAFFNLATLQ 1229 (1230)
Q Consensus 1209 ~Gt~~eLl~~~g~y~~l~~~q 1229 (1230)
.|+|+||+++++.|+++++.|
T Consensus 555 ~G~~~~L~~~~~~y~~l~~~~ 575 (592)
T PRK10790 555 QGTHQQLLAAQGRYWQMYQLQ 575 (592)
T ss_pred EcCHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999876
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-82 Score=804.32 Aligned_cols=564 Identities=23% Similarity=0.362 Sum_probs=491.6
Q ss_pred chHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHHHHHHHHH
Q 000909 8 NNIGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGLAVM 87 (1230)
Q Consensus 8 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (1230)
..+++++++.+++++.+ +..++++++..++....|++++.++|.+... .. ...+....+.++++.++..
T Consensus 142 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~-------~~---~~~l~~~~~~~~~~~~~~~ 210 (708)
T TIGR01193 142 NSLLKFIPLITRQKKLI-VNIVIAAIIVTLISIAGSYYLQKIIDTYIPH-------KM---MGTLGIISIGLIIAYIIQQ 210 (708)
T ss_pred chHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------CC---hHHHHHHHHHHHHHHHHHH
Confidence 45677888877665543 4445555555555556668889999976432 11 1223333334444556667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHH
Q 000909 88 VVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISG 167 (1230)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~ 167 (1230)
++.++..++..+.+.++..++|.++|+|++++|+.||++ .++| ++++|++ |++.+++++...+...+.++.++++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~-~~~G--~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~ 286 (708)
T TIGR01193 211 ILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFST-RRTG--EIVSRFT-DASSIIDALASTILSLFLDMWILVIV 286 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-Cchh--HHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999999999996 5666 9999998 99999999988888888888888888
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHH
Q 000909 168 LAFSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDS 247 (1230)
Q Consensus 168 ~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~ 247 (1230)
++++++++|.+++++++.+|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++...+
T Consensus 287 ~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~ 366 (708)
T TIGR01193 287 GLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGD 366 (708)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 248 TTKLGIKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTEASIAAS 326 (1230)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ 326 (1230)
..+...+..........+. .+..+..++++++|++++..|.+|+|.++++..+...+..|+.++...+..++++..+.+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ 446 (708)
T TIGR01193 367 YLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANN 446 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777666555544 444556677889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCCCCCCcccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 000909 327 RIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRF 406 (1230)
Q Consensus 327 ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~ 406 (1230)
|+.++++.+++.+.... ....++..+.|+++||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+
T Consensus 447 ri~~~l~~~~e~~~~~~-~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl 523 (708)
T TIGR01193 447 RLNEVYLVDSEFINKKK-RTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF 523 (708)
T ss_pred HHHHHHcCCCccccccc-ccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 99999987654332111 0112234578999999999973 35699999999999999999999999999999999999
Q ss_pred CCCCCceEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcC-CCCCCHHHHHHHHHHHhHHHHHHhCCCcccc
Q 000909 407 YDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFG-KLDATMDEVIAAATAANAHNFIRQLPEGYET 485 (1230)
Q Consensus 407 ~~~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t 485 (1230)
|+|++|+|++||+|+++++.+++|++||||||||++|++||+|||.++ .++.++++++++|+.++++++++++|+|+||
T Consensus 524 ~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt 603 (708)
T TIGR01193 524 FQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQT 603 (708)
T ss_pred CCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCc
Confidence 999999999999999999999999999999999999999999999998 5778899999999999999999999999999
Q ss_pred hhcCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEe
Q 000909 486 KVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVD 565 (1230)
Q Consensus 486 ~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~ 565 (1230)
.+||+|.+|||||||||+||||++++|+|||||||||+||+++|+.+.+.+++. +++|+|+||||+++++.||+|++|+
T Consensus 604 ~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~ 682 (708)
T TIGR01193 604 ELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLD 682 (708)
T ss_pred EecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEE
Confidence 999999999999999999999999999999999999999999999999999875 6899999999999999999999999
Q ss_pred CCeEEEecChhHHHhhcCcHHHHHHH
Q 000909 566 NGCLVEIGTHNDLINRIDGHYAKMAK 591 (1230)
Q Consensus 566 ~G~i~~~g~~~~l~~~~~~~~~~~~~ 591 (1230)
+|++++.|+|+||+++ ++.|+++++
T Consensus 683 ~G~i~~~G~~~~L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 683 HGKIIEQGSHDELLDR-NGFYASLIH 707 (708)
T ss_pred CCEEEEECCHHHHHhc-CCcHHHHhh
Confidence 9999999999999985 889988764
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-83 Score=716.97 Aligned_cols=541 Identities=26% Similarity=0.405 Sum_probs=456.5
Q ss_pred HHHHHHHHHHHHHHHHHhc-cchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q 000909 676 SVQPTYALTIGGMISAFFA-KSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAA 754 (1230)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~ 754 (1230)
......+..+...++..-. ...+............|+++.+.+.+|+.++.++|.++.+++.+..-.+.|++++.++++
T Consensus 44 ~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~ 123 (591)
T KOG0057|consen 44 ILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLS 123 (591)
T ss_pred HhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3444455555555554421 111111222334456788888999999999999999999999999999999999999999
Q ss_pred ccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000909 755 WFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAM-IMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSS 833 (1230)
Q Consensus 755 ~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~ 833 (1230)
||. ...+|.+.+.+.+-...+...+...+..++..++.+.... .+..-..+..+++.+..+.....+.+........
T Consensus 124 ~~~--~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~ 201 (591)
T KOG0057|consen 124 FFL--SRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNR 201 (591)
T ss_pred hhc--CCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHH
Confidence 997 5678999999999998888888877777777666554444 3333444555555555554444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 834 VSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMSWALDFWYGG 913 (1230)
Q Consensus 834 ~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 913 (1230)
...+...+.+.+...+.|++.+.++||+||.|++..++|+..+.++.+...+.....++.......+.....+.+.+.|.
T Consensus 202 fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~ 281 (591)
T KOG0057|consen 202 FRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGS 281 (591)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666777788889999999999999999999999999999999999988877777666666666666677777777888
Q ss_pred HHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCcccccCcEE
Q 000909 914 TLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIE 993 (1230)
Q Consensus 914 ~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~ 993 (1230)
.-+..|.++.|.+.....++..+..++..+.....++.++..-+..++...+....+.. .+.+.....|.|+
T Consensus 282 ~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~--------~~~~i~~~~~~I~ 353 (591)
T KOG0057|consen 282 NGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQE--------AALPIELFGGSIE 353 (591)
T ss_pred hhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhh--------ccCCcccCCCcEE
Confidence 87889999999999999999999999999999999999999888888776543332211 0112233567899
Q ss_pred EEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcceEE
Q 000909 994 MRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALV 1073 (1230)
Q Consensus 994 f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~V 1073 (1230)
|+||+|.|+ |++++|+++||+|++||||||||+|||||||++++|+||+| ++|+|+|||+||++++++.+|+.||+|
T Consensus 354 F~dV~f~y~--~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~V 430 (591)
T KOG0057|consen 354 FDDVHFSYG--PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVV 430 (591)
T ss_pred EEeeEEEeC--CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEe
Confidence 999999997 45569999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred cccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000909 1074 SQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILL 1153 (1230)
Q Consensus 1074 pQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p~ILl 1153 (1230)
|||..||++||-+||.||+|.+++||+.++||++++||.+.++|+||+|.|||+|..||||||||++||||++++|||++
T Consensus 431 PQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 431 PQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred CCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEEEEecCHhHHhhcccccHHHhhhc
Q 000909 1154 LDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLATLQ 1229 (1230)
Q Consensus 1154 LDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~g~y~~l~~~q 1229 (1230)
+|||||+||.+||+.|.+.+.+...++|+|+|+||++++++||+|+|||+|+|.|+|+|+||+++.+.|..+|..|
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~~ 586 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTTQ 586 (591)
T ss_pred ecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhccc
Confidence 9999999999999999999999889999999999999999999999999999999999999999888999999876
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-82 Score=804.27 Aligned_cols=564 Identities=23% Similarity=0.327 Sum_probs=489.8
Q ss_pred chHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHHHHHHHHH
Q 000909 8 NNIGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGLAVM 87 (1230)
Q Consensus 8 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (1230)
..+++++++++++++. ++..++++++..+.....|++++.++|.+.... .. ..+..+.+.++++.++..
T Consensus 140 ~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~------~~----~~l~~~~~~~~~~~~~~~ 208 (710)
T TIGR03796 140 SLLRALWRRLRGSRGA-LLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQG------RQ----DWLRPLLLGMGLTALLQG 208 (710)
T ss_pred ccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------Ch----hHHHHHHHHHHHHHHHHH
Confidence 3466677777665443 234444444444444455678899999764321 11 122233334445556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHH
Q 000909 88 VVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISG 167 (1230)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~ 167 (1230)
++.+++.++..+.+.++..++|.++|+|++++|+++|++ .++| ++++|+++| +.+++++...+..++.+++++++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~-~~~g--~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~ 284 (710)
T TIGR03796 209 VLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQ-RHAG--DIASRVQLN-DQVAEFLSGQLATTALDAVMLVFY 284 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC-Cccc--HHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999999999997 5667 999999988 789999998899999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHH
Q 000909 168 LAFSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDS 247 (1230)
Q Consensus 168 ~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~ 247 (1230)
++++++++|.+++++++.+|+.+++..++.++..+..++.++..++..+.+.|.++|+++||++++|+.+.++|++...+
T Consensus 285 ~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~ 364 (710)
T TIGR03796 285 ALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAK 364 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 248 TTKLGIKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTEASIAAS 326 (1230)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ 326 (1230)
..+...+......+...+. .+..+..++++++|++++..|.+|+|.++++..+...+..|+..+...+..++++..+.+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ 444 (710)
T TIGR03796 365 LLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLN 444 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888777776665554 555566777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCCCC---C-Cccc-CCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHH
Q 000909 327 RIFDRIDRVPEIDGEDT---K-GLVL-DEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIA 401 (1230)
Q Consensus 327 ri~~~l~~~~~~~~~~~---~-~~~~-~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ 401 (1230)
|+.++++.+++.+.... . .... +...+.|+++||+|+|++. ++++|+|+||+|+|||++|||||||||||||++
T Consensus 445 ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlk 523 (710)
T TIGR03796 445 RLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAK 523 (710)
T ss_pred HHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 99999987654332110 0 0111 2335689999999999853 357999999999999999999999999999999
Q ss_pred HHhcCCCCCCceEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCC
Q 000909 402 LVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPE 481 (1230)
Q Consensus 402 ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 481 (1230)
+|+|+|+|++|+|.+||+|+++++.+++|++||||||||++|++||+|||.++.++.++++++++|+.+++++++.++|+
T Consensus 524 lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~ 603 (710)
T TIGR03796 524 LVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPG 603 (710)
T ss_pred HHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcC
Confidence 99999999999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred cccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEE
Q 000909 482 GYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLI 561 (1230)
Q Consensus 482 g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i 561 (1230)
|++|.+||+|.+|||||||||+||||++++|+|+|||||||+||+++|+.+.+.+++ .++|+|+||||+++++.||+|
T Consensus 604 gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~I 681 (710)
T TIGR03796 604 GYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEI 681 (710)
T ss_pred cccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEE
Confidence 999999999999999999999999999999999999999999999999999999986 589999999999999999999
Q ss_pred EEEeCCeEEEecChhHHHhhcCcHHHHHH
Q 000909 562 AVVDNGCLVEIGTHNDLINRIDGHYAKMA 590 (1230)
Q Consensus 562 ~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 590 (1230)
++|++|++++.|+|+||+++ ++.|++++
T Consensus 682 ivl~~G~i~~~G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 682 IVLERGKVVQRGTHEELWAV-GGAYARLI 709 (710)
T ss_pred EEEeCCEEEEecCHHHHHHc-CCcHHHHh
Confidence 99999999999999999985 88898876
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-81 Score=778.98 Aligned_cols=566 Identities=21% Similarity=0.299 Sum_probs=482.2
Q ss_pred HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Q 000909 10 IGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGLAVMVV 89 (1230)
Q Consensus 10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (1230)
+++++++.+++++. ++++++++++..+.....|++++.++|...... .......... .....+++++++..++
T Consensus 4 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~ 76 (574)
T PRK11160 4 LLPFLKLYKRHWFM-LSLGILLAIVTLLASIGLLTLSGWFLSASAVAG-----LAGLYSFNYM-LPAAGVRGAAIGRTAG 76 (574)
T ss_pred hHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----ccchhhHHHH-hHHHHHHHHHHHHHHH
Confidence 45677777766543 456666666666666666678899998643110 0000000111 1122344455677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 000909 90 AFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLA 169 (1230)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~ 169 (1230)
.+++.++.++.+.++..++|.++|+|++++|+.+|++ .++| ++++|+++|++.+++++.+.++.++..+++++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~-~~~g--~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (574)
T PRK11160 77 RYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLAR-YRQG--DLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTI 153 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhcc-CChh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999997 5666 999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHH
Q 000909 170 FSTYFSWRLSLVAFPTLLLLII-PGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDST 248 (1230)
Q Consensus 170 ~~~~~~~~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 248 (1230)
++++++|.+++++++++|++++ +..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++.
T Consensus 154 ~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~ 233 (574)
T PRK11160 154 GLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQW 233 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHH
Confidence 9999999999988877776654 446677888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 000909 249 TKLGIKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFIL-SGLSLGSALPELKYFTEASIAAS 326 (1230)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~s~~ 326 (1230)
.+...+..+..+...+.. .+..+..++++++|+++ ..|.+++|.+++++.+... ...++..+...+..++++..+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ 312 (574)
T PRK11160 234 LAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASAR 312 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888888777666655 44455566677888887 4788999999888766544 34466777778889999999999
Q ss_pred HHHHHhccCCCCCCCCCCCcccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 000909 327 RIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRF 406 (1230)
Q Consensus 327 ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~ 406 (1230)
|+.++++.+++.+.... .......+.|+++||+|+|+++ ++++|+|+||+++|||++|||||||||||||+++|+|+
T Consensus 313 ri~~ll~~~~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~ 389 (574)
T PRK11160 313 RINEITEQKPEVTFPTT--STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRA 389 (574)
T ss_pred HHHHHHhCCCCCCCCcc--cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 99999987665322111 1112234679999999999753 34699999999999999999999999999999999999
Q ss_pred CCCCCceEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccch
Q 000909 407 YDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETK 486 (1230)
Q Consensus 407 ~~~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 486 (1230)
|+|++|+|++||+|+++++.+++|++|+||+|||++|++||+|||.++.++.++++++++++.+++++++++ |+|+||.
T Consensus 390 ~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~ 468 (574)
T PRK11160 390 WDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAW 468 (574)
T ss_pred CCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCch
Confidence 999999999999999999999999999999999999999999999999988899999999999999999999 9999999
Q ss_pred hcCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEeC
Q 000909 487 VGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDN 566 (1230)
Q Consensus 487 ~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~ 566 (1230)
+||+|.+||||||||++||||++++|+|+|||||||+||+++++.+.+.+.+..+++|+|+||||+++++.||+|++|++
T Consensus 469 vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~ 548 (574)
T PRK11160 469 LGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDN 548 (574)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred CeEEEecChhHHHhhcCcHHHHHHH
Q 000909 567 GCLVEIGTHNDLINRIDGHYAKMAK 591 (1230)
Q Consensus 567 G~i~~~g~~~~l~~~~~~~~~~~~~ 591 (1230)
|+++|.|+|+||+++ ++.|+++++
T Consensus 549 G~i~~~g~~~~l~~~-~g~y~~l~~ 572 (574)
T PRK11160 549 GQIIEQGTHQELLAQ-QGRYYQLKQ 572 (574)
T ss_pred CeEEEeCCHHHHHhc-CcHHHHHHh
Confidence 999999999999985 899999875
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-81 Score=795.98 Aligned_cols=564 Identities=27% Similarity=0.415 Sum_probs=494.3
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 652 RLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNFAY 731 (1230)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (1230)
.+++..++.++.+...++++++........++++..+++....... ......+.+.++++.++..++.+++.++...
T Consensus 129 ~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~---~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~ 205 (694)
T TIGR01846 129 WFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG---LSTLSVLALAMLAVAIFEPALGGLRTYLFAH 205 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555555566777777766542211 1223344455566667778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 732 MGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAV 811 (1230)
Q Consensus 732 ~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l 811 (1230)
.+.++..++|.++|++++++|+.||+ .+++|++++|+ +|++.+++++...+...+..+..+++.++++++++|.+++
T Consensus 206 ~~~~~~~~l~~~~~~~l~~l~~~~f~--~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 282 (694)
T TIGR01846 206 LTSRIDVELGARLYRHLLGLPLGYFE--SRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTG 282 (694)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHcC--CCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998 78899999999 6999999998877777776666666667788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 812 VMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAG 891 (1230)
Q Consensus 812 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 891 (1230)
++++++|+.++..++..+..++...+..+..++..+.+.|++.|+++||++|.|+.+.++|++..++..+...+..+...
T Consensus 283 i~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (694)
T TIGR01846 283 VVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGN 362 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888887777777777777777788889999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC
Q 000909 892 IGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIP 971 (1230)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~ 971 (1230)
....+...+..+..++++|+|++++..|.+|+|.++++..+...+..|+..+...+.++..+..+++|+.++++.+++.+
T Consensus 363 ~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 442 (694)
T TIGR01846 363 IAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPR 442 (694)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 88888888888889999999999999999999999999999999999999999999999999999999999998765432
Q ss_pred CCCCCCCCCCCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeE
Q 000909 972 GSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051 (1230)
Q Consensus 972 ~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I 1051 (1230)
.. .....+...|.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|
T Consensus 443 ~~-------~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I 514 (694)
T TIGR01846 443 SA-------GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQV 514 (694)
T ss_pred CC-------CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 11 001112235789999999999743 3469999999999999999999999999999999999999999999
Q ss_pred EECCeecCCCChHHHhhcceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCC
Q 000909 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQL 1131 (1230)
Q Consensus 1052 ~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~L 1131 (1230)
++||+|+++++.+++|++++||||||.+|+|||||||.+++|+++++++++|++.++++++++++|+||||.++++|.+|
T Consensus 515 ~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~L 594 (694)
T TIGR01846 515 LVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANL 594 (694)
T ss_pred EECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEEEEecC
Q 000909 1132 SGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGT 1211 (1230)
Q Consensus 1132 SgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt 1211 (1230)
|||||||+|||||++++|+|||||||||+||++||+.+.+.|++..+++|+|+||||++++..||+|+||++|+|+|.|+
T Consensus 595 SgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~ 674 (694)
T TIGR01846 595 SGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGR 674 (694)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred HhHHhhcccccHHHhhhc
Q 000909 1212 YAQLTHMRGAFFNLATLQ 1229 (1230)
Q Consensus 1212 ~~eLl~~~g~y~~l~~~q 1229 (1230)
|+||++++|.|++|++.|
T Consensus 675 ~~~l~~~~~~y~~l~~~~ 692 (694)
T TIGR01846 675 HEELLALQGLYARLWQQQ 692 (694)
T ss_pred HHHHHHcCChHHHHHHhh
Confidence 999999999999999876
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-81 Score=706.57 Aligned_cols=505 Identities=22% Similarity=0.349 Sum_probs=437.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000909 713 SLSLISLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTT 792 (1230)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~ 792 (1230)
++++...+..++..+..+.+..++...+|.++|+++...+..-.. .-.+|+++||+..|++.+|+.+-..+.+.+..+
T Consensus 66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~--r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~ 143 (573)
T COG4987 66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLL--RYRSGDLLNRLVADVDALDNLYLRVIAPAVVAL 143 (573)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHH--hcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHH
Confidence 346677778888888899999999999999999999988877665 557899999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHH
Q 000909 793 SAVAIAMIMGLVVAWKLAVVMIAVQPL-TILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQI 871 (1230)
Q Consensus 793 ~~~~~~~~~~~~~~~~l~l~~l~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~ 871 (1230)
....+.++..-+++|.+++.+..+..+ .++......++-++..++.....+...+++.|.+.|....+.||+++.+.+.
T Consensus 144 ~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~ 223 (573)
T COG4987 144 VLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTA 223 (573)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHH
Confidence 877777777777788877665544443 3444555666666666677777788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000909 872 FDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAG-SMTSDL 950 (1230)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~ 950 (1230)
+.+..+.+.+...+...+.++..++.+++..+..+..+.+.+..+..|..+......+.+.+.....++..+. ..+.+.
T Consensus 224 l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~l 303 (573)
T COG4987 224 LEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHL 303 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHh
Confidence 9999999999999999998888888888777777644444444566677775444444444445555555555 677889
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCC
Q 000909 951 AKGSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSG 1030 (1230)
Q Consensus 951 ~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SG 1030 (1230)
.+...|+.|+.++.+.+++...+ +. +.+...-.++++||+|+||++ +.++|+|+||++++||||||+||||
T Consensus 304 gq~~~Sa~Rl~~i~~q~~e~~~~-----~~---~~~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SG 374 (573)
T COG4987 304 GQVIASARRLNDILDQKPEVTFP-----DE---QTATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSG 374 (573)
T ss_pred hHHHHHHHHHhhhccCCcccCCC-----cc---ccCCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCC
Confidence 99999999999999887765432 00 011111169999999999865 4579999999999999999999999
Q ss_pred CCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchH
Q 000909 1031 CGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAH 1110 (1230)
Q Consensus 1031 SGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~ 1110 (1230)
|||||++++|.|.|+|++|+|..+|.|++.++.+++|+.|++++|.++||++|+|+||.+++|++||||+|+++++++++
T Consensus 375 sGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~ 454 (573)
T COG4987 375 SGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLE 454 (573)
T ss_pred CCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCch
Q 000909 1111 EFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLN 1190 (1230)
Q Consensus 1111 ~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ 1190 (1230)
+++++.|+||+|++||+|.+|||||||||||||+||+|.|++||||||.+||++||+.|.+.+.+..+|||+|+||||+.
T Consensus 455 ~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~ 534 (573)
T COG4987 455 KLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLR 534 (573)
T ss_pred HHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCEEEEEeCcEEEEecCHhHHhhcccccHHHhhh
Q 000909 1191 TIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLATL 1228 (1230)
Q Consensus 1191 ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~g~y~~l~~~ 1228 (1230)
.++.||||+|||+|+++|+|+|.+|++++|.|++|++.
T Consensus 535 ~le~~drIivl~~Gkiie~G~~~~Ll~~~g~~~~l~q~ 572 (573)
T COG4987 535 GLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLYQL 572 (573)
T ss_pred cHhhcCEEEEEECCeeeecCCHHhhhccccHHHHHhcc
Confidence 99999999999999999999999999999999999864
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-81 Score=794.87 Aligned_cols=556 Identities=25% Similarity=0.365 Sum_probs=485.8
Q ss_pred chHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHHHHHHHHH
Q 000909 8 NNIGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGLAVM 87 (1230)
Q Consensus 8 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (1230)
..+.+++++++++++. +...++++++..++....|++++.++|.+.... +. ..+....+.++++.++..
T Consensus 133 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~------~~----~~l~~~~~~~~~~~~~~~ 201 (694)
T TIGR03375 133 RPKHWFWSTLKESWPL-YRDVLIASLLINLLALASPLFVMNVYDRVVPNQ------AF----ETLWVLAIGVALAIVFDF 201 (694)
T ss_pred ccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC------cH----hHHHHHHHHHHHHHHHHH
Confidence 3466677777665443 344455555555556666788899999764220 11 122333333444455667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHH
Q 000909 88 VVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISG 167 (1230)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~ 167 (1230)
++.+++.++..+.+.++..++|.++|+|++++|++| ++ .++| ++++|+ +|++.+++++...+...+.++.++++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~-~~~G--~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~ 276 (694)
T TIGR03375 202 VLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-RP-ASVG--SFANQL-REFESVRDFFTSATLTALIDLPFALLF 276 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CC-CChh--HHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999999998 54 4556 999999 799999999988888888888888888
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHH
Q 000909 168 LAFSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDS 247 (1230)
Q Consensus 168 ~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~ 247 (1230)
++++++++|.++++.++.+|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++
T Consensus 277 ~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~ 356 (694)
T TIGR03375 277 LLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAA 356 (694)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 248 TTKLGIKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTEASIAAS 326 (1230)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ 326 (1230)
..+...+..+.......+. .+..+..++++++|++++..|.+|+|.++++..+...+..|+..+...+..++.+..+.+
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ 436 (694)
T TIGR03375 357 LARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQ 436 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888888777766555 555566677889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCCCCCCcccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 000909 327 RIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRF 406 (1230)
Q Consensus 327 ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~ 406 (1230)
|+.++++.+++.+... .........+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+
T Consensus 437 ri~~il~~~~e~~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl 514 (694)
T TIGR03375 437 SLDELMQLPVERPEGT-RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL 514 (694)
T ss_pred HHHHHHcCCCCCCCCC-CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 9999998765432211 111112335689999999999743 45699999999999999999999999999999999999
Q ss_pred CCCCCceEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccch
Q 000909 407 YDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETK 486 (1230)
Q Consensus 407 ~~~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 486 (1230)
|+|++|+|.+||+|+++++.+++|++|+||+|||++|++||+|||.+++++.++++++++++.++++++++++|+|+||.
T Consensus 515 ~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~ 594 (694)
T TIGR03375 515 YQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQ 594 (694)
T ss_pred CCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccce
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred hcCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEeC
Q 000909 487 VGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDN 566 (1230)
Q Consensus 487 ~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~ 566 (1230)
+||+|.+||||||||++||||++++|+|+|||||||+||+++|+.+.+.+.+..+++|+|+||||+++++.||+|++|++
T Consensus 595 i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~ 674 (694)
T TIGR03375 595 IGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDN 674 (694)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred CeEEEecChhHHHhh
Q 000909 567 GCLVEIGTHNDLINR 581 (1230)
Q Consensus 567 G~i~~~g~~~~l~~~ 581 (1230)
|+++|+|+|+||+++
T Consensus 675 G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 675 GRIVADGPKDQVLEA 689 (694)
T ss_pred CEEEeeCCHHHHHHH
Confidence 999999999999874
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-81 Score=715.05 Aligned_cols=549 Identities=26% Similarity=0.353 Sum_probs=480.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 30 VGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIR 109 (1230)
Q Consensus 30 ~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr 109 (1230)
+++.+.++......+++..+++.+... . ....+..+...++++.+++.++.+.......+.+.++..++|
T Consensus 7 ll~~l~~i~~i~qa~llA~~l~~l~~~-------~---~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR 76 (559)
T COG4988 7 LLAVLSGIAIIAQAALLADILTKLIEG-------Q---LFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLR 76 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-------c---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445556666655422 1 113344555566677778888999999999999999999999
Q ss_pred HHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000909 110 YKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLL 189 (1230)
Q Consensus 110 ~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~~~~~~~~ 189 (1230)
.++++|+.++++.+-.+ .++| +..+.++..++.++.+++..+|.++...+.++..++.+++++|.-++++++++|++
T Consensus 77 ~~~l~~l~~~gp~~~~~-~~~g--~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlI 153 (559)
T COG4988 77 QLVLDKLAKLGPAFIAQ-KPAG--SAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLI 153 (559)
T ss_pred HHHHHHHHhCChhhhcC-CCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999998886 5667 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000909 190 IIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLGIKQGTAKGLAVGST-GL 268 (1230)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 268 (1230)
.+++..++++.++..+++...+.+.++.+-+.++|+.|+|.|+..+...+++.+..++.++..++.-+..-+..... ++
T Consensus 154 PlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeff 233 (559)
T COG4988 154 PLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFF 233 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888766665555555 66
Q ss_pred HHHHHHHHHHHHHHHHHh-cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcc
Q 000909 269 SFAIWAFLAWYGSHLVMF-KGETGGKIYAAGISFILSGLSLGSALPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLV 347 (1230)
Q Consensus 269 ~~~~~~~~~~~g~~~~~~-~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~ 347 (1230)
.+...+++..+.+..... |.++....+.++...--++.|+..+...++.-+.+.++.+.++.+++.+++..+.......
T Consensus 234 a~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~ 313 (559)
T COG4988 234 AYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEV 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcccccc
Confidence 666666666665655666 7888888777777777778899999999999999999999999999876553322211111
Q ss_pred cCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHH
Q 000909 348 LDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLK 427 (1230)
Q Consensus 348 ~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~ 427 (1230)
......+++.+|++|.||++ +++++|+||++++|+++||||+||||||||+++|+|+++|++|+|.+||++..+++.+
T Consensus 314 ~~~~~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~ 391 (559)
T COG4988 314 ANEPPIEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPE 391 (559)
T ss_pred ccCCCceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHH
Confidence 12223356666999999864 2799999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHH
Q 000909 428 WVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARA 507 (1230)
Q Consensus 428 ~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 507 (1230)
.||++++||+|+|++|++||||||.+++++.+++++.++++.+++.+++.. |+|+||.+||+|.+|||||+||+++|||
T Consensus 392 ~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARA 470 (559)
T COG4988 392 AWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARA 470 (559)
T ss_pred HHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEeCCeEEEecChhHHHhhcCcHHH
Q 000909 508 IIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYA 587 (1230)
Q Consensus 508 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 587 (1230)
++++++++|||||||+||.+||+.|.+.|.++.+++|+|+||||++.+.+||+|+|||+|+++|+|+|++|.++ ++.|+
T Consensus 471 ll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~ 549 (559)
T COG4988 471 LLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYA 549 (559)
T ss_pred hcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999996 99999
Q ss_pred HHHHHhhc
Q 000909 588 KMAKLQRQ 595 (1230)
Q Consensus 588 ~~~~~~~~ 595 (1230)
+++..|+.
T Consensus 550 ~l~~~q~~ 557 (559)
T COG4988 550 NLLKQQEG 557 (559)
T ss_pred HHHHHHhc
Confidence 99987754
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-84 Score=708.19 Aligned_cols=556 Identities=31% Similarity=0.394 Sum_probs=452.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 000909 27 LGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYL--GLAVMVVAFLEGYCWSKTSERQ 104 (1230)
Q Consensus 27 ~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~ 104 (1230)
+..++.++..++....|.+.++++|.+..+ +... ...++.+..+.++- +-+..++.-+++++|..+.+-.
T Consensus 219 ~cl~ll~i~rli~~~~pi~~k~iv~~ltap-------~~~~-~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyt 290 (790)
T KOG0056|consen 219 FCLFLLIIGRLINVSLPILSKWIVDELTAP-------DTFQ-YSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYT 290 (790)
T ss_pred HHHHHHHHHHHHhhhhHHhHHHHHHhhcCc-------chhh-HHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhH
Confidence 334444444455555667888999877532 1100 11122222211111 1123466677888888899999
Q ss_pred HHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHH
Q 000909 105 VVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVF-ISGLAFSTYFSWRLSLVAF 183 (1230)
Q Consensus 105 ~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~l~~~ 183 (1230)
.+++-.++|+|+.++++.|+-+ .++| +++.-+++..+.+. ++...+.++.-.+.-+ ++.+.+...++|+++++++
T Consensus 291 tR~ie~~lfrHlh~LSlrwHL~-rrtG--eVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVf 366 (790)
T KOG0056|consen 291 TREIETELFRHLHNLSLRWHLN-RRTG--EVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVF 366 (790)
T ss_pred HHHHHHHHHHHHHhhceeeeec-cccc--ceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHH
Confidence 9999999999999999999987 5677 98877765555444 3332222222222222 2223344557999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 184 PTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLGIKQGTAKGLAV 263 (1230)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (1230)
+++.++..+...+.....+..++...+..+..+.-.+++-+..|||.||+|+++.++|.+...++.+...|....-.+..
T Consensus 367 l~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN 446 (790)
T KOG0056|consen 367 LMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLN 446 (790)
T ss_pred HHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888877777766666667777766666777778899999999999999999999999999999988877554433333
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 000909 264 GST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTEASIAASRIFDRIDRVPEIDGED 342 (1230)
Q Consensus 264 ~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~ 342 (1230)
... .+..+..+..-.+.++++..+.+++|+++.+..|++...+|++.+......+|+...-+++.+++++++++..+.+
T Consensus 447 ~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P 526 (790)
T KOG0056|consen 447 IVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLP 526 (790)
T ss_pred HHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCC
Confidence 222 2222223333344556677888999999999999999999999999999999999999999999999888766543
Q ss_pred CCCcccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecC
Q 000909 343 TKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIR 422 (1230)
Q Consensus 343 ~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~ 422 (1230)
. ..+....+|.|+|+||+|.|+ +.+++|+||||++.||+.+|+|||||+||||++++|.|||+.++|.|.|||+||+
T Consensus 527 ~-a~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIr 603 (790)
T KOG0056|consen 527 G-APPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIR 603 (790)
T ss_pred C-CCCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHH
Confidence 2 233345678999999999996 4578999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHH
Q 000909 423 RLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRI 502 (1230)
Q Consensus 423 ~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 502 (1230)
++...++|++||+||||..||++||..||.|++|.+++||+.+|++.+++||.|.++|+||+|.+||+|-.||||||||+
T Consensus 604 nvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRV 683 (790)
T KOG0056|consen 604 NVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRV 683 (790)
T ss_pred HHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEeCCeEEEecChhHHHhhc
Q 000909 503 AIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRI 582 (1230)
Q Consensus 503 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 582 (1230)
||||+++++|.|++|||+|||||..||+.|+.++.+...++|.|+|+||++++-+||.|+|+++|+|+|.|+||||+++.
T Consensus 684 AiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rd 763 (790)
T KOG0056|consen 684 AIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRD 763 (790)
T ss_pred HHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred CcHHHHHHHHhhccc
Q 000909 583 DGHYAKMAKLQRQFS 597 (1230)
Q Consensus 583 ~~~~~~~~~~~~~~~ 597 (1230)
+|.|++||+.|+...
T Consensus 764 gG~Ya~MWq~qqa~g 778 (790)
T KOG0056|consen 764 GGAYADMWQAQQAMG 778 (790)
T ss_pred CCcHHHHHHHHHhcC
Confidence 899999998776443
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-80 Score=776.46 Aligned_cols=566 Identities=31% Similarity=0.468 Sum_probs=490.9
Q ss_pred HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Q 000909 10 IGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGLAVMVV 89 (1230)
Q Consensus 10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (1230)
+++++++.+++++. +++.+++.++..+.....+++++.++|..... ... .......+.++++.++..++
T Consensus 13 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-------~~~---~~~~~~~~~~~~~~l~~~~~ 81 (582)
T PRK11176 13 FRRLWPTIAPFKAG-LIVAGVALILNAASDTFMLSLLKPLLDDGFGK-------ADR---SVLKWMPLVVIGLMILRGIT 81 (582)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------Cch---hHHHHHHHHHHHHHHHHHHH
Confidence 45677777666544 34445555555555556667788888865422 111 11222222334455667778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 000909 90 AFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLA 169 (1230)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~ 169 (1230)
.++..++..+.+.++..++|..+++++.+.|.++|++ .++| ++++|+++|++.+++.+...+..++..++++++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~-~~~g--~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (582)
T PRK11176 82 SFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDK-QSTG--TLLSRITYDSEQVASSSSGALITVVREGASIIGLFI 158 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999999999999999999986 5666 999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHH
Q 000909 170 FSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTT 249 (1230)
Q Consensus 170 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 249 (1230)
++++++|.+++++++++|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..
T Consensus 159 ~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~ 238 (582)
T PRK11176 159 MMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMR 238 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 99999999999999988988888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 250 KLGIKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTEASIAASRI 328 (1230)
Q Consensus 250 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri 328 (1230)
+...+..+......... .+..+...+++++|++.+..|.+++|.++++..+......|+..+...+..++.+..+.+|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri 318 (582)
T PRK11176 239 QQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTL 318 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888877776655554 44555666778889999999999999999988888888899999999999999999999999
Q ss_pred HHHhccCCCCCCCCCCCcccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 000909 329 FDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 329 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
.++++.+++.+... ...++..+.|+++||+|+|+++ ++++|+|+||+|++||++||+|+||||||||+++|+|+|+
T Consensus 319 ~~~~~~~~~~~~~~---~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~ 394 (582)
T PRK11176 319 FAILDLEQEKDEGK---RVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD 394 (582)
T ss_pred HHHhcCCCcCCCCC---cCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 99987654322111 1112234579999999999753 3579999999999999999999999999999999999999
Q ss_pred CCCceEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCC-CCHHHHHHHHHHHhHHHHHHhCCCcccchh
Q 000909 409 ADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLD-ATMDEVIAAATAANAHNFIRQLPEGYETKV 487 (1230)
Q Consensus 409 ~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~ 487 (1230)
|++|+|++||+|+++++.+++|++|+||||||++|++||+|||.+|+++ .++++++++++.++++++++++|+|+||.+
T Consensus 395 p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~i 474 (582)
T PRK11176 395 IDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVI 474 (582)
T ss_pred CCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCcee
Confidence 9999999999999999999999999999999999999999999999764 689999999999999999999999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEeCC
Q 000909 488 GERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNG 567 (1230)
Q Consensus 488 ~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G 567 (1230)
|++|.+|||||||||+||||++++|+|+|||||||+||+++++.+.+.+.+..+++|+|+||||++.++.||+|++|++|
T Consensus 475 g~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g 554 (582)
T PRK11176 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDG 554 (582)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999987899999999999999999999999999
Q ss_pred eEEEecChhHHHhhcCcHHHHHHHHhh
Q 000909 568 CLVEIGTHNDLINRIDGHYAKMAKLQR 594 (1230)
Q Consensus 568 ~i~~~g~~~~l~~~~~~~~~~~~~~~~ 594 (1230)
+++|.|+|++++++ ++.|+++++.|.
T Consensus 555 ~i~e~g~~~~l~~~-~~~y~~l~~~~~ 580 (582)
T PRK11176 555 EIVERGTHAELLAQ-NGVYAQLHKMQF 580 (582)
T ss_pred EEEEeCCHHHHHhC-CChHHHHHHHHh
Confidence 99999999999986 889999987653
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-80 Score=775.44 Aligned_cols=563 Identities=32% Similarity=0.523 Sum_probs=506.5
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 653 LLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNFAYM 732 (1230)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1230)
++++.++.++.+++++++..+.+...+..++.+..+++..+.... ......+...++++.++..++.+++.++....
T Consensus 5 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 81 (571)
T TIGR02203 5 LWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD---RSVLWWVPLVVIGLAVLRGICSFVSTYLLSWV 81 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666777777777777777777777777777765443211 11233344456667777788889999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 733 GGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVV 812 (1230)
Q Consensus 733 ~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~ 812 (1230)
+.++..++|..+++++++.|.++|+ +.+.|++++|+++|++.++..+...+..++..++.++++++++++++|.++++
T Consensus 82 ~~~~~~~lr~~l~~~~~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i 159 (571)
T TIGR02203 82 SNKVVRDIRVRMFEKLLGLPVSFFD--RQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLI 159 (571)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999999999997 67899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 813 MIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGI 892 (1230)
Q Consensus 813 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (1230)
++++.|+.++..++..+.......+..+..++..+.+.|.++|+++||+++.++.+.++|++..++..+...+..+....
T Consensus 160 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (571)
T TIGR02203 160 VVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSI 239 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888888899999999999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCC
Q 000909 893 GMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPG 972 (1230)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~ 972 (1230)
...+...+..+..++++++|++++..|.+++|.++++..+...+..|+..+...+..+.++..+.+|+.++++.+++.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 319 (571)
T TIGR02203 240 SSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDT 319 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 88888888888889999999999999999999999999999999999999999999999999999999999986554321
Q ss_pred CCCCCCCCCCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEE
Q 000909 973 SSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVR 1052 (1230)
Q Consensus 973 ~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~ 1052 (1230)
. . .+..+..++|+|+||+|+|+++ ++++|+|+||+|+|||++||+|+||||||||+++|+|+|+|++|+|+
T Consensus 320 ~------~--~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~ 390 (571)
T TIGR02203 320 G------T--RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL 390 (571)
T ss_pred C------C--CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEE
Confidence 1 0 0111234679999999999754 45799999999999999999999999999999999999999999999
Q ss_pred ECCeecCCCChHHHhhcceEEcccccCCcccHHHHhccCCC-CCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCC
Q 000909 1053 VDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKL-DASENEVVEAARAANAHEFISSLKDGYETECGERGVQL 1131 (1230)
Q Consensus 1053 idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~-~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~L 1131 (1230)
+||+|+++++.+++|++++||||||++|+|||||||.++++ +.++++++++++.+++++++.++|+|+||++|++|.+|
T Consensus 391 i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~L 470 (571)
T TIGR02203 391 LDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLL 470 (571)
T ss_pred ECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcC
Confidence 99999999999999999999999999999999999999986 89999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEEEEecC
Q 000909 1132 SGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGT 1211 (1230)
Q Consensus 1132 SgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt 1211 (1230)
|||||||||||||++++|+|||||||||+||++|++.+.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+
T Consensus 471 SgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~ 550 (571)
T TIGR02203 471 SGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGT 550 (571)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred HhHHhhcccccHHHhhhc
Q 000909 1212 YAQLTHMRGAFFNLATLQ 1229 (1230)
Q Consensus 1212 ~~eLl~~~g~y~~l~~~q 1229 (1230)
|++|+++++.|++++..|
T Consensus 551 ~~~l~~~~~~~~~~~~~~ 568 (571)
T TIGR02203 551 HNELLARNGLYAQLHNMQ 568 (571)
T ss_pred HHHHHHcCCHHHHHHHHh
Confidence 999999999999988765
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-80 Score=698.96 Aligned_cols=576 Identities=26% Similarity=0.367 Sum_probs=471.7
Q ss_pred cccccchHHHHHHhcChhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHH
Q 000909 3 REKNKNNIGIIFRFADRTDILL----MVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLY 78 (1230)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (1230)
..++....+.+..|.++++... ++.++++.+.+.......|.+++.++|...... .... ........+..
T Consensus 6 ~s~~~~~~~~l~~~~~~k~~p~~r~~v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~-----~~~a-~~~~~~~~~~~ 79 (591)
T KOG0057|consen 6 RSSKLKILRSLVSYKWPKSRPVLRFRVFPALGLLLGAKILNVQVPFIFKLIIDGLNDAD-----GNPA-VLSTITALLAG 79 (591)
T ss_pred ccchhHHHHHHHhhheecCCceeeehHHHHHHHHHhhhHhheehHHHHHHHHhhhhhcc-----cCcc-hhhhhhHHHHH
Confidence 3333345677777776654432 222333333334556666788889988763110 0110 11122233445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHH
Q 000909 79 FVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFV 158 (1230)
Q Consensus 79 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~ 158 (1230)
+.+..++..++..++...+.++.+++..+.-.++|.+++++++++|.+ ..+| ++.+.+..-...|..++...+..++
T Consensus 80 y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~-~~tG--~l~~~idRgsraI~~vl~~~V~~i~ 156 (591)
T KOG0057|consen 80 YGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLS-RGTG--ALNRIIDRGSRAISFVLSAMVFNII 156 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcC-CCcc--hHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 566677788899999999999999999999999999999999999986 4556 9999999888889888877766666
Q ss_pred HHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHH
Q 000909 159 MNASVFISGL-AFSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRI 237 (1230)
Q Consensus 159 ~~~~~~i~~~-~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 237 (1230)
..++-+.... .+..-++...+++.+..+..+..+......+..+..++.+++.+...+.+-|++.+..+||+||.|+++
T Consensus 157 p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~E 236 (591)
T KOG0057|consen 157 PTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYE 236 (591)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHH
Confidence 6554433333 333445666667766666666666666777778888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 238 IDRYEAILDSTTKLGIKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELK 316 (1230)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~ 316 (1230)
.+||+....++.+...+.....++..... .+.....+.+++.|..-+..+.+|.|+++........+..|+..+...+.
T Consensus 237 a~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr 316 (591)
T KOG0057|consen 237 ASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYR 316 (591)
T ss_pred HHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999998888766666554444 44445555666677777788899999999988888888899998888888
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCCCcccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcH
Q 000909 317 YFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGK 396 (1230)
Q Consensus 317 ~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGK 396 (1230)
.+.++..-+...+...+....+.+ ...++...++.|+|+||+|+|++ ++++|+++||+|++||++||||+|||||
T Consensus 317 ~~~q~l~Dm~~~~~l~~~~~~i~~---~~~~i~~~~~~I~F~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGK 391 (591)
T KOG0057|consen 317 ELRQALTDMRTLFILLEVDEDIQE---AALPIELFGGSIEFDDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGK 391 (591)
T ss_pred HHHHHHHhHHHHHhhhhhhhhhhh---ccCCcccCCCcEEEEeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCH
Confidence 888888777776655433222111 11233445678999999999973 4569999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHH
Q 000909 397 STAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFI 476 (1230)
Q Consensus 397 STl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i 476 (1230)
||++++|+||++ ++|+|+|||+|+++++++++|+.|||||||..||++||.+||.||++.++++++.++|+.+++||.+
T Consensus 392 STilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i 470 (591)
T KOG0057|consen 392 STILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVI 470 (591)
T ss_pred HHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHH
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh
Q 000909 477 RQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVR 556 (1230)
Q Consensus 477 ~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~ 556 (1230)
.++|+||+|.+||+|..|||||||||+||||+++||||+++|||||+||.+||+.+.+.+.+...+||+|+|.||+++++
T Consensus 471 ~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~ 550 (591)
T KOG0057|consen 471 SRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLK 550 (591)
T ss_pred HhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred ccCEEEEEeCCeEEEecChhHHHhhcCcHHHHHHHHhh
Q 000909 557 NADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQR 594 (1230)
Q Consensus 557 ~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 594 (1230)
+||+|++++||++.|.|+|+||+. +++.|.++|..|.
T Consensus 551 ~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~~~ 587 (591)
T KOG0057|consen 551 DFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTTQT 587 (591)
T ss_pred cCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhcccc
Confidence 999999999999999999999999 5899999987654
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-80 Score=780.58 Aligned_cols=567 Identities=29% Similarity=0.443 Sum_probs=494.9
Q ss_pred chHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHHHHHHHHH
Q 000909 8 NNIGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGLAVM 87 (1230)
Q Consensus 8 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (1230)
..+.+++++.+++++. +...++++++..++....|++++.++|.+.... + ...+....+.++++.++..
T Consensus 125 ~~~~~~~~~~~~~~~~-~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~------~----~~~l~~l~~~~~~~~~~~~ 193 (694)
T TIGR01846 125 FGFSWFIPAIIRYRKQ-FREVLLISLALQLFALVTPLLFQVVIDKVLVHR------G----LSTLSVLALAMLAVAIFEP 193 (694)
T ss_pred CcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------C----hhHHHHHHHHHHHHHHHHH
Confidence 4567777777665443 334444455555555566688899999764320 1 1223333444455566677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHH
Q 000909 88 VVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISG 167 (1230)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~ 167 (1230)
++.+++.++..+.+.++..++|.++|+|++++|++||++ .++| ++++|+ +|++.+++++...+..++.++.++++.
T Consensus 194 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~-~~~g--~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~ 269 (694)
T TIGR01846 194 ALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFES-RRVG--DTVARV-RELEQIRNFLTGSALTVVLDLLFVVVF 269 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCC-CCHH--HHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999996 5656 999999 699999999988888888777777777
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHH
Q 000909 168 LAFSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDS 247 (1230)
Q Consensus 168 ~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~ 247 (1230)
++++++++|.+++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..++
T Consensus 270 ~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~ 349 (694)
T TIGR01846 270 LAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAA 349 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHH
Confidence 88999999999999999999998888888888889899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 248 TTKLGIKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTEASIAAS 326 (1230)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ 326 (1230)
..+...+..+......... .+..+..++++|+|++++..|.+|+|.++++..+...+..|+..+...+..++++..+.+
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ 429 (694)
T TIGR01846 350 YVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALE 429 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888877777666555 555566777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCCCCCCcccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 000909 327 RIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRF 406 (1230)
Q Consensus 327 ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~ 406 (1230)
|+.++++.+++.+... ....+...+.|+++||+|+|++. ++++|+|+||+|+|||++||+|+||||||||+++|+|+
T Consensus 430 ri~~~l~~~~e~~~~~--~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~ 506 (694)
T TIGR01846 430 RLGDILNSPTEPRSAG--LAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRL 506 (694)
T ss_pred HHHHHHcCCCCccCCC--CCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 9999998765432211 11122335689999999999743 35699999999999999999999999999999999999
Q ss_pred CCCCCceEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccch
Q 000909 407 YDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETK 486 (1230)
Q Consensus 407 ~~~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 486 (1230)
|+|++|+|++||+|+++++.+++|++|+||+|+|++|++||+|||.++.++.++++++++|+.++++++++++|+|+||.
T Consensus 507 ~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~ 586 (694)
T TIGR01846 507 YTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTE 586 (694)
T ss_pred CCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcE
Confidence 99999999999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred hcCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEeC
Q 000909 487 VGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDN 566 (1230)
Q Consensus 487 ~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~ 566 (1230)
+|++|.+||||||||++||||++++|+|+|||||||+||+++++.+.+.+++..+++|+|+||||+++++.||+|++|++
T Consensus 587 i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~ 666 (694)
T TIGR01846 587 VGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEK 666 (694)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred CeEEEecChhHHHhhcCcHHHHHHHHh
Q 000909 567 GCLVEIGTHNDLINRIDGHYAKMAKLQ 593 (1230)
Q Consensus 567 G~i~~~g~~~~l~~~~~~~~~~~~~~~ 593 (1230)
|++++.|+|+|++++ ++.|+++++.|
T Consensus 667 G~i~~~g~~~~l~~~-~~~y~~l~~~~ 692 (694)
T TIGR01846 667 GQIAESGRHEELLAL-QGLYARLWQQQ 692 (694)
T ss_pred CEEEEeCCHHHHHHc-CChHHHHHHhh
Confidence 999999999999985 89999998754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-79 Score=766.76 Aligned_cols=575 Identities=25% Similarity=0.348 Sum_probs=481.6
Q ss_pred Ccccccc-chHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHH
Q 000909 1 MRREKNK-NNIGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYF 79 (1230)
Q Consensus 1 ~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (1230)
||-++.. +.++++++|.+++++. +++.+++.++..++.+..|++++.++|.+.... +.. ......+.+.+
T Consensus 1 ~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~------~~~--~~~~~~~~~~~ 71 (592)
T PRK10790 1 MRSFSQLWPTLKRLLAYGSPWRKP-LGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKG------NLP--LGLVAGLAAAY 71 (592)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------Ccc--hhHHHHHHHHH
Confidence 4533332 3456666776655443 455666667767777777788999999754220 100 01111122233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHH
Q 000909 80 VYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVM 159 (1230)
Q Consensus 80 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~ 159 (1230)
+++.++..++.++..+.....+.++..++|.++|+++++.|+++|++ .++| ++++|+++|++.+++.+...+..++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~~~g--~~~~~~~~d~~~v~~~~~~~~~~~~~ 148 (592)
T PRK10790 72 VGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDT-QPVG--QLISRVTNDTEVIRDLYVTVVATVLR 148 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CChh--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566778888889999999999999999999999999999996 4556 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHH
Q 000909 160 NASVFISGLAFSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIID 239 (1230)
Q Consensus 160 ~~~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~ 239 (1230)
.+..+++.++++++++|.+++++++++|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~ 228 (592)
T PRK10790 149 SAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGE 228 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHH
Confidence 99889999999999999999998888888877777788888888888888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 240 RYEAILDSTTKLGIKQGTAKGLAV-GST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKY 317 (1230)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~ 317 (1230)
+|.+..++..+...+.....++.. .+. .+..+...++.++++. +..|.+++|.++++..+......|+..+...+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~ 307 (592)
T PRK10790 229 RMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSM 307 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888877766665554432 222 2222222222223333 5789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCCCcccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHH
Q 000909 318 FTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKS 397 (1230)
Q Consensus 318 ~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKS 397 (1230)
++++..+.+|+.++++.+++..... ......++|+++||+|+|++ ++++|+|+||+|++||++||||+||||||
T Consensus 308 ~~~~~~s~~ri~~~l~~~~~~~~~~----~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKS 381 (592)
T PRK10790 308 LQQAVVAGERVFELMDGPRQQYGND----DRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKS 381 (592)
T ss_pred HHHHHHHHHHHHHHhcCCCccCCCC----ccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHH
Confidence 9999999999999998654321111 11223467999999999974 34699999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHH
Q 000909 398 TAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIR 477 (1230)
Q Consensus 398 Tl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~ 477 (1230)
||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||++|++||+|||.+++ +.++++++++++.++++++++
T Consensus 382 TLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~ 460 (592)
T PRK10790 382 TLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELAR 460 (592)
T ss_pred HHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999997 678999999999999999999
Q ss_pred hCCCcccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc
Q 000909 478 QLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN 557 (1230)
Q Consensus 478 ~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~ 557 (1230)
++|+|+||.+|++|.+|||||||||+||||++++|+|+|||||||+||+++++.+.+.+++..+++|+|+||||++.++.
T Consensus 461 ~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~ 540 (592)
T PRK10790 461 SLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVE 540 (592)
T ss_pred hccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999998788999999999999999
Q ss_pred cCEEEEEeCCeEEEecChhHHHhhcCcHHHHHHHHhhcc
Q 000909 558 ADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQF 596 (1230)
Q Consensus 558 ~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~ 596 (1230)
||+|++|++|++++.|+|+||+++ ++.|+++++.|...
T Consensus 541 ~D~ii~l~~G~i~~~G~~~~L~~~-~~~y~~l~~~~~~~ 578 (592)
T PRK10790 541 ADTILVLHRGQAVEQGTHQQLLAA-QGRYWQMYQLQLAG 578 (592)
T ss_pred CCEEEEEECCEEEEEcCHHHHHhC-CCHHHHHHHHHhhh
Confidence 999999999999999999999986 89999999876543
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-79 Score=764.14 Aligned_cols=565 Identities=27% Similarity=0.416 Sum_probs=482.1
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 649 SFFRLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYN 728 (1230)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1230)
.++++..+.++.++.+.+.+++.++........++++..+++..... .....+...++++.++..+..++..++
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (588)
T PRK13657 6 LYARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGK------GDIFPLLAAWAGFGLFNIIAGVLVARH 79 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666677777777777765432 111122223333333333334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 729 FAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWK 808 (1230)
Q Consensus 729 ~~~~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 808 (1230)
..+...+...+++.++|++++++|..+|+ +.++|++++|+++|++.+...+...+..++..++.+++.+++++.++|.
T Consensus 80 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (588)
T PRK13657 80 ADRLAHRRRLAVLTEYFERIIQLPLAWHS--QRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWR 157 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHC--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666777999999999999997 6789999999999999999888777877777777778888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 809 LAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSW 888 (1230)
Q Consensus 809 l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 888 (1230)
++++++++.|+..++..+..+.......+..+..++..+.+.|.+.|+++||+||.++.+.+++++..++..+...+...
T Consensus 158 l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (588)
T PRK13657 158 LSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLS 237 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888887777777777776777777778889999999999999999999999999999999998888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 000909 889 LAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQS 968 (1230)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~ 968 (1230)
.......+.+....+...+++++|++++.+|.+++|.++++..+...+..++..+...+..+..+..+++|+.++++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~ 317 (588)
T PRK13657 238 WWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVP 317 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 77777777788888888899999999999999999999999999999999999999999999999999999999987654
Q ss_pred CCCCCCCCCCCCCCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCC
Q 000909 969 LIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQ 1048 (1230)
Q Consensus 969 ~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~ 1048 (1230)
+.+.. ....+..+..+.|+|+||+|+||++ +++|+|+||+++|||++||||+||||||||+++|+|+|+|++
T Consensus 318 ~~~~~------~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~ 389 (588)
T PRK13657 318 DVRDP------PGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQS 389 (588)
T ss_pred ccCCC------CCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCC
Confidence 32211 0001111234679999999999742 469999999999999999999999999999999999999999
Q ss_pred CeEEECCeecCCCChHHHhhcceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCC
Q 000909 1049 GSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERG 1128 (1230)
Q Consensus 1049 G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G 1128 (1230)
|+|++||+|+++++.+++|++|+||||||.+|+|||||||.+++|+.+|++++++++.+++++++.++|+|+||.+|++|
T Consensus 390 G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g 469 (588)
T PRK13657 390 GRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERG 469 (588)
T ss_pred CEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCC
Confidence 99999999999999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEEEE
Q 000909 1129 VQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVE 1208 (1230)
Q Consensus 1129 ~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive 1208 (1230)
.+||||||||||||||++++|+|||||||||+||++||+.+.+.|++..+++|+|+||||++.++.||+|++|++|+++|
T Consensus 470 ~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~ 549 (588)
T PRK13657 470 RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVE 549 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999998878999999999999999999999999999999
Q ss_pred ecCHhHHhhcccccHHHhhhc
Q 000909 1209 RGTYAQLTHMRGAFFNLATLQ 1229 (1230)
Q Consensus 1209 ~Gt~~eLl~~~g~y~~l~~~q 1229 (1230)
.|+|++|+++++.|++|++.|
T Consensus 550 ~g~~~~l~~~~~~y~~l~~~~ 570 (588)
T PRK13657 550 SGSFDELVARGGRFAALLRAQ 570 (588)
T ss_pred eCCHHHHHHCCChHHHHHHHh
Confidence 999999999999999999865
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-79 Score=756.82 Aligned_cols=564 Identities=25% Similarity=0.391 Sum_probs=486.8
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 650 FFRLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNF 729 (1230)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1230)
+++++++.+++++.+.+.+++.++...+.+..++.++.+++....... ...+...++++.++..+..++..++.
T Consensus 7 ~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (585)
T TIGR01192 7 YVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD------VLPTLALWAGFGVFNTIAYVLVAREA 80 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777788877788888888888888888888888876553211 11122222223333444444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 730 AYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKL 809 (1230)
Q Consensus 730 ~~~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 809 (1230)
.....++..++|.++|++++++|++||+ ++++|++++|+++|++.+...+...+..++..++.+++.+++++.++|.+
T Consensus 81 ~~~~~~~~~~lr~~~~~~l~~l~~~~~~--~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 158 (585)
T TIGR01192 81 DRLAHGRRATLLTEAFGRIISMPLSWHQ--QRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRL 158 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666667778999999999999998 67899999999999999999988888888888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 810 AVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWL 889 (1230)
Q Consensus 810 ~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (1230)
++++++++|+.++......+.......+..+..++..+.+.|.+.|+++||+||.++.+.+++++..++..+...+..+.
T Consensus 159 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (585)
T TIGR01192 159 SIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDW 238 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998988888777777776666666777788889999999999999999999999999999999888877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q 000909 890 AGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSL 969 (1230)
Q Consensus 890 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~ 969 (1230)
......+...+..+..++++++|++++..|.+++|.++++..+......++..+...+.++..+..+.+|+.++++.+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~ 318 (585)
T TIGR01192 239 WALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQ 318 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 77777777777778888899999999999999999999999998889999999999999999999999999999876543
Q ss_pred CCCCCCCCCCCCCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCC
Q 000909 970 IPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQG 1049 (1230)
Q Consensus 970 ~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G 1049 (1230)
.+.. ..........+.|+|+||+|+|+++ .++|+|+||+|++||++|||||||||||||+++|+|+|+|++|
T Consensus 319 ~~~~------~~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G 390 (585)
T TIGR01192 319 REEP------ADAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVG 390 (585)
T ss_pred ccCC------ccCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCC
Confidence 2211 0001111234679999999999742 3589999999999999999999999999999999999999999
Q ss_pred eEEECCeecCCCChHHHhhcceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCC
Q 000909 1050 SVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGV 1129 (1230)
Q Consensus 1050 ~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~ 1129 (1230)
+|++||+|+++++.+.+|++++||||||.+|++|+||||.+++|++++++++++++.+++++++.++|+|+||.+|++|.
T Consensus 391 ~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~ 470 (585)
T TIGR01192 391 QILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGN 470 (585)
T ss_pred EEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCC
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEEEEe
Q 000909 1130 QLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVER 1209 (1230)
Q Consensus 1130 ~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~ 1209 (1230)
+||||||||++|||||+++|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|++|+++|.
T Consensus 471 ~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~ 550 (585)
T TIGR01192 471 RLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEK 550 (585)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cCHhHHhhcccccHHHhhhc
Q 000909 1210 GTYAQLTHMRGAFFNLATLQ 1229 (1230)
Q Consensus 1210 Gt~~eLl~~~g~y~~l~~~q 1229 (1230)
|+|++|++++|.|+++|+.|
T Consensus 551 g~~~~l~~~~~~y~~l~~~~ 570 (585)
T TIGR01192 551 GSFQELIQKDGRFYKLLRRS 570 (585)
T ss_pred CCHHHHHHCCChHHHHHHhC
Confidence 99999999999999999876
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-80 Score=758.45 Aligned_cols=522 Identities=22% Similarity=0.318 Sum_probs=446.9
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 654 LSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTY--SLIFCSLSLISLAFNLLQHYNFAY 731 (1230)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 731 (1230)
+++.+++++.+.+.+++..+........++.++.+++....... ....+ ...++++.++..++.++..++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (529)
T TIGR02868 5 LPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-----VLYLSVAAVAVRAFGIGRAVFRYLERLVGHD 79 (529)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555656666666666666666667777777765432110 11111 111223445566777888888889
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 732 MGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAV 811 (1230)
Q Consensus 732 ~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l 811 (1230)
.+.++..++|.++|++++++|..||+ ++++|++++|+++|++.++..+...+..++..+..+++++++++.++|.+++
T Consensus 80 ~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 157 (529)
T TIGR02868 80 AALRSLGRLRVRVYDRLARLALAGRR--RFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAAL 157 (529)
T ss_pred HHHHHHHHHHHHHHHHhhccCccccc--cCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999997 7789999999999999999999998888888888888999999999999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 812 VMIAVQPLTILCF-YTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLA 890 (1230)
Q Consensus 812 ~~l~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (1230)
++++.+|++.++. ++..+..+...++.++..++..+.+.|.+.|+++||+|+.|+.+.++|++..++..+...+..+..
T Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02868 158 VLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARAT 237 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888877765554 444444444455666677888899999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 000909 891 GIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLI 970 (1230)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~ 970 (1230)
+...++...+..+...+.+|+|++++..|.++.|.+.++..+......++..+...+..+.++..+.+|+.++++.+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~ 317 (529)
T TIGR02868 238 GLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPR 317 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 88888888888888888899999999999999999999999988899999999999999999999999999999876543
Q ss_pred CCCCCCCCCCCCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCe
Q 000909 971 PGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050 (1230)
Q Consensus 971 ~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~ 1050 (1230)
+... .......++..++|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+
T Consensus 318 ~~~~----~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~ 391 (529)
T TIGR02868 318 PEGV----VPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGE 391 (529)
T ss_pred CCCC----CCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 3210 00011112234679999999999753 35999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCChHHHhhcceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCC
Q 000909 1051 VRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQ 1130 (1230)
Q Consensus 1051 I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~ 1130 (1230)
|++||+|++++ .+++|++|+||||||+||+|||||||++|+|+++||++++|++.++++++|.+||+||||++||+|.+
T Consensus 392 I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~ 470 (529)
T TIGR02868 392 VTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGAR 470 (529)
T ss_pred EEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCc
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCc
Q 000909 1131 LSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRL 1189 (1230)
Q Consensus 1131 LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl 1189 (1230)
||||||||||||||++++|+|||||||||+||++||+.|++.+++..+++|+|+||||+
T Consensus 471 LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 471 LSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999999999988999999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-79 Score=761.63 Aligned_cols=569 Identities=33% Similarity=0.516 Sum_probs=493.5
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 652 RLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNFAY 731 (1230)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (1230)
.++++.++.++.+.+.+++..+.+......++.+..+++..+.... ......+..+++++.++..++.+++.++...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (576)
T TIGR02204 8 ALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS---SGLLNRYFAFLLVVALVLALGTAARFYLVTW 84 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555666666666666666777777777765442211 1122233444455555666777888889999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 732 MGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAV 811 (1230)
Q Consensus 732 ~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l 811 (1230)
.+.++..++|..+++++++.|..+|+ ..++|++++|+++|++.++..+...+..++..++.+++.+++++.++|.+++
T Consensus 85 ~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (576)
T TIGR02204 85 LGERVVADIRRAVFAHLISLSPSFFD--KNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTS 162 (576)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHc--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999997 5778999999999999999999888888888888888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 812 VMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAG 891 (1230)
Q Consensus 812 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 891 (1230)
++++..|+.++..++..+......++..+..++..+.+.|.+.|+++||+++.++.+.++|++..++..+...+......
T Consensus 163 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (576)
T TIGR02204 163 LVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRA 242 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888887777777777777888888888889999999999999999999999999999999988887777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC
Q 000909 892 IGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIP 971 (1230)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~ 971 (1230)
....+...+.++..++.+++|++++..|.+++|.++++..+......++..+...+.++..+..+.+|+.++++.+++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 322 (576)
T TIGR02204 243 LLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIK 322 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCC
Confidence 55666666666777788889999999999999999999999999999999999999999999999999999998755422
Q ss_pred CCCCCCCCCCCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeE
Q 000909 972 GSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051 (1230)
Q Consensus 972 ~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I 1051 (1230)
... . .....++..+.|+|+||+|+||+++++++|+|+||+|+|||++||+|+||||||||+++|+|+|+|++|+|
T Consensus 323 ~~~----~-~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I 397 (576)
T TIGR02204 323 APA----H-PKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI 397 (576)
T ss_pred CCC----C-CccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE
Confidence 110 0 00111223467999999999986434579999999999999999999999999999999999999999999
Q ss_pred EECCeecCCCChHHHhhcceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCC
Q 000909 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQL 1131 (1230)
Q Consensus 1052 ~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~L 1131 (1230)
++||+|+++++.+++|++++|+||||++|+|||||||.+++|+.++++++++++.+++.++++++|+|+||++||+|.+|
T Consensus 398 ~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~L 477 (576)
T TIGR02204 398 LLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTL 477 (576)
T ss_pred EECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcC
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEEEEecC
Q 000909 1132 SGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGT 1211 (1230)
Q Consensus 1132 SgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt 1211 (1230)
|||||||++||||++++|+|||||||||+||++|++.+.+.+++..+++|+|+||||++.+..||+|++|++|+++|.|+
T Consensus 478 SgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~ 557 (576)
T TIGR02204 478 SGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGT 557 (576)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeec
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred HhHHhhcccccHHHhhhcC
Q 000909 1212 YAQLTHMRGAFFNLATLQS 1230 (1230)
Q Consensus 1212 ~~eLl~~~g~y~~l~~~q~ 1230 (1230)
|++|+++++.|++|++.|.
T Consensus 558 ~~~l~~~~~~~~~l~~~~~ 576 (576)
T TIGR02204 558 HAELIAKGGLYARLARLQF 576 (576)
T ss_pred HHHHHHcCChHHHHHhhcC
Confidence 9999999999999998874
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-82 Score=688.33 Aligned_cols=492 Identities=29% Similarity=0.448 Sum_probs=430.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000909 727 YNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAM-IMGLVV 805 (1230)
Q Consensus 727 ~~~~~~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~-~~~~~~ 805 (1230)
.+|..+++.+...+--+.|.|+..+++.|+- +..+|.+..-.......++..+...+...+..++-+...+ ++...+
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl--~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~ 81 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHL--ERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY 81 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhh--hcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 4677788899999999999999999999997 4456666655555555666666555555555555444333 445577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHH
Q 000909 806 AWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARK 885 (1230)
Q Consensus 806 ~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~ 885 (1230)
+|+.+.+.++++.++++++....-......++..++.++++....+++.+.+|+|.||.|+.+..+|++.++.+.+...+
T Consensus 82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k 161 (497)
T COG5265 82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK 161 (497)
T ss_pred ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence 89988888888877777766655555555677777888889999999999999999999999999999999999988777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000909 886 KSWLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILD 965 (1230)
Q Consensus 886 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~ 965 (1230)
.....+++......+......+....+...+..|.+|.|+++....++.....|+..+.....++.++...+++++++++
T Consensus 162 ~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~ 241 (497)
T COG5265 162 VHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD 241 (497)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence 65555555555555566666677777888899999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCcc-cccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccc
Q 000909 966 RQSLIPGSSQAGDGTRGSKLQ-KISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFY 1044 (1230)
Q Consensus 966 ~~~~~~~~~~~~~~~~~~~~~-~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~ 1044 (1230)
.+.+.... +..++.+ -..|.|.|+||+|.|. |.+|+|+|+||++++|+++||||+||+||||+.++|+|||
T Consensus 242 ~~~~v~d~------pda~~L~~~~~g~v~F~~V~F~y~--~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFy 313 (497)
T COG5265 242 VEAEVSDA------PDAPPLWPVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFY 313 (497)
T ss_pred cchhhccC------CCCccccccccceEEEEEEEeecc--ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHh
Confidence 87765433 1223334 3568999999999996 4568999999999999999999999999999999999999
Q ss_pred cCCCCeEEECCeecCCCChHHHhhcceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccc
Q 000909 1045 DVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETEC 1124 (1230)
Q Consensus 1045 ~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~v 1124 (1230)
|+++|.|.|||+||+++..+++|+.||+||||.+||++|+..|+.||+|+++++|++.|++.+++++||+++|+||||.|
T Consensus 314 D~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~V 393 (497)
T COG5265 314 DVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGV 393 (497)
T ss_pred CCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCc
Q 000909 1125 GERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADG 1204 (1230)
Q Consensus 1125 ge~G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G 1204 (1230)
||+|-.||||||||+||||++|++|+||+||||||+||.+||++||.+|++..+|+|.++|||||+|+.+||.|+||++|
T Consensus 394 gerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g 473 (497)
T COG5265 394 GERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNG 473 (497)
T ss_pred chheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCHhHHhhcccccHHHhhh
Q 000909 1205 RVVERGTYAQLTHMRGAFFNLATL 1228 (1230)
Q Consensus 1205 ~Ive~Gt~~eLl~~~g~y~~l~~~ 1228 (1230)
+|+|.|+|+||++++|.|++||.+
T Consensus 474 ~i~erg~h~~ll~~~g~ya~mw~~ 497 (497)
T COG5265 474 RIVERGTHEELLAAGGLYAEMWRR 497 (497)
T ss_pred EEEecCcHHHHHHcCChHHHHhcC
Confidence 999999999999999999999963
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-79 Score=759.34 Aligned_cols=564 Identities=33% Similarity=0.486 Sum_probs=499.5
Q ss_pred HHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 000909 11 GIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGLAVMVVA 90 (1230)
Q Consensus 11 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 90 (1230)
++++++.++.+ ..++++++++++.+++.+..+++++.++|..... .. ...+......++++.++..++.
T Consensus 3 ~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~---~~~~~~~~~~~~~~~i~~~~~~ 71 (571)
T TIGR02203 3 RRLWSYVRPYK-AGLVLAGVAMILVAATESTLAALLKPLLDDGFGG-------RD---RSVLWWVPLVVIGLAVLRGICS 71 (571)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-------Cc---hhHHHHHHHHHHHHHHHHHHHH
Confidence 45666665554 3456777777777788888888888888864322 11 1122333334555666777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 000909 91 FLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAF 170 (1230)
Q Consensus 91 ~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~ 170 (1230)
++..++..+.+.++...+|..+++++++.|.++|++ .+.| ++.+|+++|++.+++++.+.+..++.+++.+++.+++
T Consensus 72 ~~~~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~-~~~g--~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~ 148 (571)
T TIGR02203 72 FVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDR-QPTG--TLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIV 148 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999986 4556 9999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHH
Q 000909 171 STYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTK 250 (1230)
Q Consensus 171 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~ 250 (1230)
+++++|.+++++++++|+.+++..++.++.++..++.++..++..+.+.|.++|+++||.++.|+.+.++|++..++..+
T Consensus 149 l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~ 228 (571)
T TIGR02203 149 LLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRR 228 (571)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 251 LGIKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTEASIAASRIF 329 (1230)
Q Consensus 251 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~ 329 (1230)
...+..+..+....+. .+..+..++++++|++++..|.+++|.++++..++..+..|+..+...+..++++..+.+|+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~ 308 (571)
T TIGR02203 229 LAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLF 308 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877777666655 555566677888999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCCCCCCCcccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 000909 330 DRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDA 409 (1230)
Q Consensus 330 ~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~ 409 (1230)
++++.+++.+... ....+..++|+++||+|+|++. ++++|+|+||+|++||+++|+|+||||||||+++|+|+|+|
T Consensus 309 ~~l~~~~~~~~~~---~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~ 384 (571)
T TIGR02203 309 TLLDSPPEKDTGT---RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEP 384 (571)
T ss_pred HHHcCCCCCCCCC---CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 9998655432211 1112234679999999999754 35799999999999999999999999999999999999999
Q ss_pred CCceEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCC-CCCHHHHHHHHHHHhHHHHHHhCCCcccchhc
Q 000909 410 DDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKL-DATMDEVIAAATAANAHNFIRQLPEGYETKVG 488 (1230)
Q Consensus 410 ~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~ 488 (1230)
++|+|++||+++++++.+++|++|+||||+|++|++|++|||.++++ +.++++++++++.+++++++.++|+|+||.+|
T Consensus 385 ~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~ 464 (571)
T TIGR02203 385 DSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIG 464 (571)
T ss_pred CCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceec
Confidence 99999999999999999999999999999999999999999999986 78899999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEeCCe
Q 000909 489 ERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGC 568 (1230)
Q Consensus 489 ~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~ 568 (1230)
++|.+|||||||||+||||++++|+|+|||||||+||+++++.+.+.|.+..+++|+|+||||++.+..||+|++|++|+
T Consensus 465 ~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~ 544 (571)
T TIGR02203 465 ENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGR 544 (571)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCE
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred EEEecChhHHHhhcCcHHHHHHHHh
Q 000909 569 LVEIGTHNDLINRIDGHYAKMAKLQ 593 (1230)
Q Consensus 569 i~~~g~~~~l~~~~~~~~~~~~~~~ 593 (1230)
+++.|+|++++++ ++.|++++..+
T Consensus 545 i~~~g~~~~l~~~-~~~~~~~~~~~ 568 (571)
T TIGR02203 545 IVERGTHNELLAR-NGLYAQLHNMQ 568 (571)
T ss_pred EEeeCCHHHHHHc-CCHHHHHHHHh
Confidence 9999999999985 78898887654
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-78 Score=757.37 Aligned_cols=567 Identities=30% Similarity=0.411 Sum_probs=479.7
Q ss_pred hHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHHHHHHHHHH
Q 000909 9 NIGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGLAVMV 88 (1230)
Q Consensus 9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (1230)
.+++++++.+++++ .+.+.++++++..++.+..|++++.++|.+... . ......+.++++.++..+
T Consensus 6 ~~~~l~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~-------~------~~~~~~~~~~~~~~~~~~ 71 (588)
T PRK13657 6 LYARVLQYLGAEKR-LGILLAVANVLLAAATFAEPILFGRIIDAISGK-------G------DIFPLLAAWAGFGLFNII 71 (588)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------c------cHHHHHHHHHHHHHHHHH
Confidence 46677777765544 344555666666666666678889999976421 0 111112222223333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 000909 89 VAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGL 168 (1230)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~ 168 (1230)
..++..++..+...++..++|.++|+|++++|+.+|++ .++| ++++|+++|++.+.+.+...+..++..++.+++.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~g--~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (588)
T PRK13657 72 AGVLVARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQ-RGSG--RALHTLLRGTDALFGLWLEFMREHLATLVALVVLL 148 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCc-CChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555566666677779999999999999986 4555 99999999999999888878888888888888888
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHH
Q 000909 169 AFSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDST 248 (1230)
Q Consensus 169 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 248 (1230)
+++++++|.+++++++++|+.+++..++.++.++..++.++..++..+.+.|.++|+++||.|+.++.+.++|.+..++.
T Consensus 149 ~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~ 228 (588)
T PRK13657 149 PLALFMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNL 228 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHH
Confidence 88999999999999998898888888888999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 249 TKLGIKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTEASIAASR 327 (1230)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~r 327 (1230)
.+...+............ .+..+..++++++|++++..|.+++|.++++..++.....|+..+...+..+..+..+.+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~ 308 (588)
T PRK13657 229 LAAQMPVLSWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEE 308 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777766666555444 4455566677889999999999999999999999888999999999999999999999999
Q ss_pred HHHHhccCCCCCCCCCCCcccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 000909 328 IFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 328 i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
+.++++.+++.+... .....+...+.|+++||+|+|+++ +++|+|+||+++|||+++|+|+||||||||+++|+|+|
T Consensus 309 i~~l~~~~~~~~~~~-~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 309 FFEVEDAVPDVRDPP-GAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred HHHHhCCCcccCCCC-CCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 999987654422111 111112234579999999999742 45999999999999999999999999999999999999
Q ss_pred CCCCceEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchh
Q 000909 408 DADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKV 487 (1230)
Q Consensus 408 ~~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~ 487 (1230)
+|++|+|.+||+++++++.+++|++|+||||+|++|++||+|||.+++++.++++++++++.+++++++.++|+|+||.+
T Consensus 386 ~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i 465 (588)
T PRK13657 386 DPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVV 465 (588)
T ss_pred CCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchh
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEeCC
Q 000909 488 GERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNG 567 (1230)
Q Consensus 488 ~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G 567 (1230)
|++|.+||||||||++||||++++|+|+|||||||+||+++++.+.+.+++..+++|+|+||||++.++.||+|++|++|
T Consensus 466 ~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G 545 (588)
T PRK13657 466 GERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNG 545 (588)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999887899999999999999999999999999
Q ss_pred eEEEecChhHHHhhcCcHHHHHHHHhhcc
Q 000909 568 CLVEIGTHNDLINRIDGHYAKMAKLQRQF 596 (1230)
Q Consensus 568 ~i~~~g~~~~l~~~~~~~~~~~~~~~~~~ 596 (1230)
++++.|+|++++++ ++.|++++..+...
T Consensus 546 ~i~~~g~~~~l~~~-~~~y~~l~~~~~~~ 573 (588)
T PRK13657 546 RVVESGSFDELVAR-GGRFAALLRAQGML 573 (588)
T ss_pred EEEEeCCHHHHHHC-CChHHHHHHHhhcc
Confidence 99999999999985 89999998866433
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-79 Score=755.99 Aligned_cols=537 Identities=24% Similarity=0.379 Sum_probs=470.2
Q ss_pred HHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccc
Q 000909 680 TYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEE 759 (1230)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~~fd~~ 759 (1230)
..++.++.+++........ ......|..+++++.++..++.++..++....+.+...++|.++|++++++|++||+
T Consensus 13 ~~p~~~~~iid~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~-- 88 (569)
T PRK10789 13 IPPKVVGIIVDGVTEQHMT--TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYL-- 88 (569)
T ss_pred HHHHHHHHHHHHhccCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc--
Confidence 3445566666654322111 112333445555555666777788888888899999999999999999999999997
Q ss_pred cCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000909 760 QNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMG-LVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNF 838 (1230)
Q Consensus 760 ~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~ 838 (1230)
++++|++++|+++|++.++..+...+..++..++..+++++++ +.++|.+++++++++|+..+..+...+...+..++.
T Consensus 89 ~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~ 168 (569)
T PRK10789 89 RHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLA 168 (569)
T ss_pred CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999887777777777765555555544 589999999999998988888777777777777777
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000909 839 VKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMSWALDFWYGGTLVQK 918 (1230)
Q Consensus 839 ~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ 918 (1230)
++..++..+.+.|.+.|+++||+|+.++.+.++|++..++..+...+..+..+....+......+..++.+++|++++..
T Consensus 169 ~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~ 248 (569)
T PRK10789 169 QAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVN 248 (569)
T ss_pred HHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 77778889999999999999999999999999999999988888888877777777777777777788889999999999
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCcccccCcEEEEEEE
Q 000909 919 GQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVD 998 (1230)
Q Consensus 919 g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vs 998 (1230)
|.+++|.++++..+......++..+...+..+..+..+.+|+.++++.+++.+.. . .+.++..++|+|+||+
T Consensus 249 g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~------~--~~~~~~~~~I~~~~v~ 320 (569)
T PRK10789 249 GSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDG------S--EPVPEGRGELDVNIRQ 320 (569)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC------C--CCCCCCCCcEEEEEEE
Confidence 9999999999999999999999999999999999999999999999875432211 0 0112234689999999
Q ss_pred EECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcceEEccccc
Q 000909 999 FAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPV 1078 (1230)
Q Consensus 999 f~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~ 1078 (1230)
|+|+.. +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++++||||||+
T Consensus 321 ~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~ 399 (569)
T PRK10789 321 FTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPF 399 (569)
T ss_pred EECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCe
Confidence 999743 3569999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeccc
Q 000909 1079 IYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEAT 1158 (1230)
Q Consensus 1079 Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p~ILlLDEaT 1158 (1230)
+|++|+||||.+++++.++++++++++.+++++++.++|+|+||.+|++|.+||||||||++||||++++|+||||||||
T Consensus 400 lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpt 479 (569)
T PRK10789 400 LFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDAL 479 (569)
T ss_pred eccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEEEEecCHhHHhhcccccHHHhhhc
Q 000909 1159 SALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLATLQ 1229 (1230)
Q Consensus 1159 SaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~g~y~~l~~~q 1229 (1230)
|+||+++++.+.+.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++|++++|.|+++++.|
T Consensus 480 s~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 550 (569)
T PRK10789 480 SAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQ 550 (569)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHh
Confidence 99999999999999999888999999999999999999999999999999999999999999999999876
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-78 Score=748.76 Aligned_cols=564 Identities=28% Similarity=0.359 Sum_probs=482.2
Q ss_pred HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Q 000909 10 IGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGLAVMVV 89 (1230)
Q Consensus 10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (1230)
++++++|.+++++ .++++++++++..++.+..|++++.++|.+... .. .. ...+.++++.++..+.
T Consensus 7 ~~~l~~~l~~~k~-~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~-------~~-----~~-~~~~~~~~~~~~~~~~ 72 (585)
T TIGR01192 7 YVRALSYLNVHKN-RVLLIVIANITLAAITIAEPILFGRIIDAISSK-------SD-----VL-PTLALWAGFGVFNTIA 72 (585)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cc-----HH-HHHHHHHHHHHHHHHH
Confidence 5677788776654 445667777777777778889999999976422 10 01 1111122233334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 000909 90 AFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLA 169 (1230)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~ 169 (1230)
.++..++..++..++..++|.++|+|++++|++||++ .++| ++++|+++|++.+++.+...+..++..++++++.++
T Consensus 73 ~~~~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~-~~~g--~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~ 149 (585)
T TIGR01192 73 YVLVAREADRLAHGRRATLLTEAFGRIISMPLSWHQQ-RGTS--NALHTLLRATETLFGLWLEFMRQHLATFVALFLLIP 149 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CChh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555556666666777789999999999999996 5556 999999999999999988888888888888888888
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHH
Q 000909 170 FSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTT 249 (1230)
Q Consensus 170 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 249 (1230)
+++.++|.+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.+++++..++..
T Consensus 150 ~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~ 229 (585)
T TIGR01192 150 TAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLL 229 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999998888888999998889888999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 250 KLGIKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTEASIAASRI 328 (1230)
Q Consensus 250 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri 328 (1230)
+...+..+..++...+. .+..+..++++++|++++..|.+++|.++++..+......|+..+...+..+..+..+.+|+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri 309 (585)
T TIGR01192 230 SAQYPVLDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDF 309 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777766666555544 44455566778899999999999999999999998888899999999999999999999999
Q ss_pred HHHhccCCCCCCCCCCCcccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 000909 329 FDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 329 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
.++++.+++.++... ....+...+.|+++||+|+|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++
T Consensus 310 ~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 386 (585)
T TIGR01192 310 FDLEDSVFQREEPAD-APELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD 386 (585)
T ss_pred HHHHcCCccccCCcc-CCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC
Confidence 999886543321111 11112234579999999999742 358999999999999999999999999999999999999
Q ss_pred CCCceEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhc
Q 000909 409 ADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVG 488 (1230)
Q Consensus 409 ~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~ 488 (1230)
|++|+|.+||.++++++.+++|++++||+|+|++|++|++|||.++.++.++++++++++.+++++++.++|+|++|.+|
T Consensus 387 ~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~ 466 (585)
T TIGR01192 387 PTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVG 466 (585)
T ss_pred CCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhc
Confidence 99999999999999999999999999999999999999999999998888899999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEeCCe
Q 000909 489 ERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGC 568 (1230)
Q Consensus 489 ~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~ 568 (1230)
++|.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+.+..+++|+|+||||+++++.||+|++|++|+
T Consensus 467 ~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~ 546 (585)
T TIGR01192 467 ERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGR 546 (585)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999998878999999999999999999999999999
Q ss_pred EEEecChhHHHhhcCcHHHHHHHHhh
Q 000909 569 LVEIGTHNDLINRIDGHYAKMAKLQR 594 (1230)
Q Consensus 569 i~~~g~~~~l~~~~~~~~~~~~~~~~ 594 (1230)
+++.|+|++++++ ++.|++++..+.
T Consensus 547 i~~~g~~~~l~~~-~~~y~~l~~~~~ 571 (585)
T TIGR01192 547 LIEKGSFQELIQK-DGRFYKLLRRSG 571 (585)
T ss_pred EEEECCHHHHHHC-CChHHHHHHhCc
Confidence 9999999999985 899999987653
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-78 Score=748.71 Aligned_cols=524 Identities=23% Similarity=0.266 Sum_probs=444.6
Q ss_pred HHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000909 12 IIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGLAVMVVAF 91 (1230)
Q Consensus 12 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 91 (1230)
+++++.+++++. +++.++++++..+.....|++++.++|..... .. . .........++++.++..++.+
T Consensus 3 ~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-------~~-~--~~~~~~~~~~~~~~~~~~~~~~ 71 (529)
T TIGR02868 3 RILPLLQPRTRR-LVVAILLGALALGSAVALLGVSAWLISRAAEM-------PP-V--LYLSVAAVAVRAFGIGRAVFRY 71 (529)
T ss_pred hHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------ch-h--HHHHHHHHHHHHHHHHHHHHHH
Confidence 566777666543 44555556666666666668889999865321 10 0 0011111112234455677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 000909 92 LEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFS 171 (1230)
Q Consensus 92 ~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~ 171 (1230)
+..++..+.+.++..++|.++|+|++++|.++|++ .++| ++++|+++|++.+++.+...+..++..++.+++.++++
T Consensus 72 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~-~~~g--~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l 148 (529)
T TIGR02868 72 LERLVGHDAALRSLGRLRVRVYDRLARLALAGRRR-FQTG--DLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAI 148 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccc-CChh--hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999996 5666 99999999999999999988999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHH
Q 000909 172 TYFSWRLSLVAFPTLLLLIIPGMIYG-KYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTK 250 (1230)
Q Consensus 172 ~~~~~~l~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~ 250 (1230)
++++|.+++++++.+|++.++...+. +..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+
T Consensus 149 ~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~ 228 (529)
T TIGR02868 149 ALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLA 228 (529)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 99999999998888777666554444 44456667778888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 251 LGIKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTEASIAASRIF 329 (1230)
Q Consensus 251 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~ 329 (1230)
...+..+..+...+.. .+..+..++++++|++++..|.++.|.++++..+......|+..+...+..++++..+.+|+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~ 308 (529)
T TIGR02868 229 AERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIE 308 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887777666555 455556677778999999999999999999998888888899888888999999999999999
Q ss_pred HHhccCCCCCCCCCC-CcccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 000909 330 DRIDRVPEIDGEDTK-GLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 330 ~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
++++.+++.+..... .....+..+.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+
T Consensus 309 ~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 309 EVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred HHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 999876543221111 11111234579999999999753 359999999999999999999999999999999999999
Q ss_pred CCCceEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhc
Q 000909 409 ADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVG 488 (1230)
Q Consensus 409 ~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~ 488 (1230)
|++|+|.+||+|++++ .+++|++|+||||||++|++||+|||++|.+++++++++++++.++++++++++|+|+||.+|
T Consensus 387 p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ig 465 (529)
T TIGR02868 387 PLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLG 465 (529)
T ss_pred CCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhc
Confidence 9999999999999999 999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCc
Q 000909 489 ERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKL 552 (1230)
Q Consensus 489 ~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l 552 (1230)
|+|.+||||||||||||||++++|+|||||||||+||+++|+.|++.+.+..+++|+|+||||+
T Consensus 466 e~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 466 EGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred cccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999988899999999995
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-77 Score=748.07 Aligned_cols=569 Identities=34% Similarity=0.516 Sum_probs=488.5
Q ss_pred HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Q 000909 10 IGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGLAVMVV 89 (1230)
Q Consensus 10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (1230)
++.++++.+++++ .+.+.+++.++.+++....|++++.++|...... +. ........+++++.++..++
T Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~ 74 (576)
T TIGR02204 6 LAALWPFVRPYRG-RVLAALVALLITAAATLSLPYAVRLMIDHGFSKD------SS----GLLNRYFAFLLVVALVLALG 74 (576)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccc------cH----HHHHHHHHHHHHHHHHHHHH
Confidence 4556666655544 3445666666677777777788999999743210 11 11222233334444455667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 000909 90 AFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLA 169 (1230)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~ 169 (1230)
.++..++..+.+.++..++|..++++++++|.++|++ .+.| ++++|+++|++.+++++...+..++..++.+++.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~-~~~g--~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~ 151 (576)
T TIGR02204 75 TAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDK-NRSG--EVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLI 151 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcc-CCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888899999999999999999999999999986 5566 999999999999999998888888999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHH
Q 000909 170 FSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTT 249 (1230)
Q Consensus 170 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 249 (1230)
++++++|.+++++++.+|+++++..++.++.++..++.++..++..+.+.|.++|+++||.|+.|+.+.++|++..++..
T Consensus 152 ~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ 231 (576)
T TIGR02204 152 MMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAY 231 (576)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHH
Confidence 99999999999998888888888888999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 250 KLGIKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTEASIAASRI 328 (1230)
Q Consensus 250 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri 328 (1230)
+...+............ .+.....++++++|++++..|.+++|.++++..+......|+..+...+..+.++..+.+|+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri 311 (576)
T TIGR02204 232 EAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERL 311 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777666655544443 34445556677889999999999999999999999988999999999999999999999999
Q ss_pred HHHhccCCCCCCCCCCCcccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 000909 329 FDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 329 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
.++++.+++.+..........+..+.|+++||+|+|++++++++|+|+||+++|||+++|+|+||||||||+++|+|+|+
T Consensus 312 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~ 391 (576)
T TIGR02204 312 IELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD 391 (576)
T ss_pred HHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 99998654422111111111122457999999999985433579999999999999999999999999999999999999
Q ss_pred CCCceEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhc
Q 000909 409 ADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVG 488 (1230)
Q Consensus 409 ~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~ 488 (1230)
|++|+|++||.++++++.+++|++|+||||+|++|++||+|||.++.++.++++++++++.+++.++++++|+|++|.+|
T Consensus 392 p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~ 471 (576)
T TIGR02204 392 PQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLG 471 (576)
T ss_pred CCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeC
Confidence 99999999999999999999999999999999999999999999998888899999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEeCCe
Q 000909 489 ERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGC 568 (1230)
Q Consensus 489 ~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~ 568 (1230)
++|.+||||||||++||||++++|+|+|||||||+||+++++.+.+.+++..+++|+|+||||++.++.||+|++|++|+
T Consensus 472 ~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~ 551 (576)
T TIGR02204 472 ERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGR 551 (576)
T ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999999878999999999999999999999999999
Q ss_pred EEEecChhHHHhhcCcHHHHHHHHh
Q 000909 569 LVEIGTHNDLINRIDGHYAKMAKLQ 593 (1230)
Q Consensus 569 i~~~g~~~~l~~~~~~~~~~~~~~~ 593 (1230)
+++.|+|++++++ ++.|++++..|
T Consensus 552 ~~~~g~~~~l~~~-~~~~~~l~~~~ 575 (576)
T TIGR02204 552 IVAQGTHAELIAK-GGLYARLARLQ 575 (576)
T ss_pred EEeeecHHHHHHc-CChHHHHHhhc
Confidence 9999999999985 88999987654
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-78 Score=744.16 Aligned_cols=538 Identities=28% Similarity=0.372 Sum_probs=467.7
Q ss_pred HHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 000909 41 CLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQE 120 (1230)
Q Consensus 41 ~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~ 120 (1230)
+.|++++.++|.+... ... ......+..+++++.++..++.++..++....+.++..++|.++|+|++++|
T Consensus 13 ~~p~~~~~iid~~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~ 83 (569)
T PRK10789 13 IPPKVVGIIVDGVTEQ-------HMT--TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQH 83 (569)
T ss_pred HHHHHHHHHHHHhccC-------Ccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3446788899865321 100 0112233333444455666778888888889999999999999999999999
Q ss_pred chhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 121 VGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFS-TYFSWRLSLVAFPTLLLLIIPGMIYGKY 199 (1230)
Q Consensus 121 ~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 199 (1230)
+++|++ .++| ++++|+++|++.++..+...+..++..++.++++++++ ++++|.+++++++++|+++++...+.++
T Consensus 84 ~~~~~~-~~~g--~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~ 160 (569)
T PRK10789 84 PEFYLR-HRTG--DLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQ 160 (569)
T ss_pred HHHHcC-CCHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999986 4555 99999999999999888777777887766666665555 5899999999999999988888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 000909 200 LIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLGIKQGTAKGLAVGST-GLSFAIWAFLAW 278 (1230)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 278 (1230)
..+..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+..+...... ....+..+++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (569)
T PRK10789 161 LHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIG 240 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988888888777776655544 344445566778
Q ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcccCCccccEEEE
Q 000909 279 YGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFE 358 (1230)
Q Consensus 279 ~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 358 (1230)
+|++++..|.+++|.++++..+......|+..+...+..++.+..+.+|+.++++.+++.+... ...+...+.|+++
T Consensus 241 ~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~---~~~~~~~~~I~~~ 317 (569)
T PRK10789 241 GGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVN 317 (569)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC---CCCCCCCCcEEEE
Confidence 8999999999999999999999999999999999999999999999999999998654432211 1112234679999
Q ss_pred EEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheEEEcc
Q 000909 359 HVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQ 438 (1230)
Q Consensus 359 ~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q 438 (1230)
||+|+|+.. ++++|+|+||+++|||+++|+||||||||||+++|+|+|+|++|+|++||+++++++..++|++|+||+|
T Consensus 318 ~v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 396 (569)
T PRK10789 318 IRQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQ 396 (569)
T ss_pred EEEEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEcc
Confidence 999999753 3569999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000909 439 EHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLD 518 (1230)
Q Consensus 439 ~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlD 518 (1230)
+|++|++|++|||.++.++.++++++++++.+++++++.++|+|++|.+|++|.+||||||||++||||++++|+|+|||
T Consensus 397 ~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlD 476 (569)
T PRK10789 397 TPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILD 476 (569)
T ss_pred CCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99999999999999998888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEeCCeEEEecChhHHHhhcCcHHHHHHHHhhc
Q 000909 519 EATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQ 595 (1230)
Q Consensus 519 E~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 595 (1230)
||||+||+++++.+.+.+++..+++|+|+||||+++++.||+|++|++|++++.|+|++++++ ++.|++++..|..
T Consensus 477 Epts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~~ 552 (569)
T PRK10789 477 DALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQL 552 (569)
T ss_pred CccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhhh
Confidence 999999999999999999988789999999999999999999999999999999999999985 8899999987654
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-76 Score=667.11 Aligned_cols=553 Identities=24% Similarity=0.325 Sum_probs=452.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 22 ILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTS 101 (1230)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 101 (1230)
+..++++++++++..+....+....|++|..-... ..... -.+......+=++++.+.+..|.+.+..|...
T Consensus 15 ~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAia-------g~~~~-f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~At 86 (573)
T COG4987 15 KFGLLLGIVLAILTLLASIGLLTLSGWFISASAIA-------GLAYI-FNVMLPSAGVRGLAILRTAARYVERLVSHDAT 86 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhc-------cHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 44556777777666555544445667777643211 00000 11122223344567888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000909 102 ERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLV 181 (1230)
Q Consensus 102 ~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~ 181 (1230)
.++..++|.++|+++...+..-..+ .++| |+++|+..|++.+++.+-..+.+.+..+....+..+.+.+++|.+++.
T Consensus 87 frvL~~lRv~~f~kl~p~sp~~~~r-~r~g--dLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~All 163 (573)
T COG4987 87 FRVLSALRVRLFEKLEPLSPALLLR-YRSG--DLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALL 163 (573)
T ss_pred HHHHHHHHHHHHHhhccCChHHHHh-cChH--hHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999999999888875 5666 999999999999999998888888888888888888888899998866
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 182 AFPT-LLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLGIKQGTAKG 260 (1230)
Q Consensus 182 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (1230)
+... +.+.+++...+.++-++..++.....+...+.+.|.+.|..+.+.||.++.+.+.+......+.+...|...+..
T Consensus 164 l~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~ 243 (573)
T COG4987 164 LGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTG 243 (573)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5433 344555666677777788888888888999999999999999999999999999999999999998888888887
Q ss_pred HHHHHH-HHHHHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccCCC
Q 000909 261 LAVGST-GLSFAIWA-FLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSAL-PELKYFTEASIAASRIFDRIDRVPE 337 (1230)
Q Consensus 261 ~~~~~~-~~~~~~~~-~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~s~~ri~~~l~~~~~ 337 (1230)
+...+. .+..+..+ .++|.++ .+-.|..+......+.+.++....++..+. ..+....+...|+.|+.++.+++++
T Consensus 244 ~~~a~~~l~~g~~v~~~l~w~a~-~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e 322 (573)
T COG4987 244 LSDAILLLIAGLLVIGLLLWMAA-QVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPE 322 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcc
Confidence 776665 33222222 4455543 233455442222222222233333343344 4567788899999999999998776
Q ss_pred CCCCCCCCcccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 000909 338 IDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRID 417 (1230)
Q Consensus 338 ~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~ 417 (1230)
...+.+ .. +.....++++||||+||+. +.++|+|+||++++||++||+|+|||||||++++|.|.|+|++|+|.++
T Consensus 323 ~~~~~~--~~-~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~ 398 (573)
T COG4987 323 VTFPDE--QT-ATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLN 398 (573)
T ss_pred cCCCcc--cc-CCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeEC
Confidence 554311 11 1112279999999999965 5679999999999999999999999999999999999999999999999
Q ss_pred CeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChh
Q 000909 418 GVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGG 497 (1230)
Q Consensus 418 g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 497 (1230)
|.++..++.+.+|+.|++++|.+++|++|+|||+.+++|++++|+++++++.+++++++++.|+|++|.+||.|..||||
T Consensus 399 g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGG 478 (573)
T COG4987 399 GVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGG 478 (573)
T ss_pred CcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEeCCeEEEecChhH
Q 000909 498 QKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHND 577 (1230)
Q Consensus 498 qkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~ 577 (1230)
||||+||||+|++|+|++||||||.+||+.||+.+.+.+.+..+|||+|+||||+..++.||+|+|||+|+++|+|+|++
T Consensus 479 E~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~ 558 (573)
T COG4987 479 ERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAE 558 (573)
T ss_pred HHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcHHHHHHH
Q 000909 578 LINRIDGHYAKMAK 591 (1230)
Q Consensus 578 l~~~~~~~~~~~~~ 591 (1230)
|+.+ +|.|+++++
T Consensus 559 Ll~~-~g~~~~l~q 571 (573)
T COG4987 559 LLAN-NGRYKRLYQ 571 (573)
T ss_pred hhcc-ccHHHHHhc
Confidence 9995 999998864
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-77 Score=732.58 Aligned_cols=527 Identities=25% Similarity=0.358 Sum_probs=457.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 662 KQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNFAYMGGRLTKRIR 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 741 (1230)
+.+.++++++++.+...+..++..+.+++....... . ......+.+.+++++++..++.+++.++....+.+...++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 80 (529)
T TIGR02857 3 RALALLGLLGALGALLIIAQAWLLARVIDGLISAGE-P-LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLR 80 (529)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-C-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666777777778888888876532111 1 12233455556667777888899999999999999999999
Q ss_pred HHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 742 LRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTI 821 (1230)
Q Consensus 742 ~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~ 821 (1230)
.++|+++++.|..||+ ++++|++++|+++|++.++..+...+..++..++.+++++++++.++|.+++++++..|+..
T Consensus 81 ~~l~~~l~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~ 158 (529)
T TIGR02857 81 ERLLAAVAALGPGWLQ--GRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIP 158 (529)
T ss_pred HHHHHHHHhCCchhhc--cCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999999997 68899999999999999999998888888888888888888899999999999988888887
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 822 LCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLT 901 (1230)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 901 (1230)
++.+...+......++..+..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+.......+...+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (529)
T TIGR02857 159 IFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFA 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766677776667777777788889999999999999999999999999999998888877777776666666666666
Q ss_pred HHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCC
Q 000909 902 FMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTR 981 (1230)
Q Consensus 902 ~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~ 981 (1230)
.+...++..++++.+..|.+++|.++++..+......++..+...+..+.++..+.+|+.++++.+++.... .
T Consensus 239 ~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~-----~-- 311 (529)
T TIGR02857 239 TLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGK-----A-- 311 (529)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-----c--
Confidence 666666666677777799999999999888888888999999999999999999999999999854321110 0
Q ss_pred CCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCC
Q 000909 982 GSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVREL 1061 (1230)
Q Consensus 982 ~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i 1061 (1230)
..+.+..+.|+|+||+|+||++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+|++++
T Consensus 312 -~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~ 389 (529)
T TIGR02857 312 -PVTAAPAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADA 389 (529)
T ss_pred -CCCCCCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhC
Confidence 0111123679999999999854 34799999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHhhcceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHH
Q 000909 1062 DVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAI 1141 (1230)
Q Consensus 1062 ~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlal 1141 (1230)
+.+++|++++||||||.+|++||||||.++.++.+|+++++|++.++++++++++|+||||.+||+|.+||||||||++|
T Consensus 390 ~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~l 469 (529)
T TIGR02857 390 DADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLAL 469 (529)
T ss_pred CHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHH
Confidence 99999999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEE
Q 000909 1142 ARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALV 1201 (1230)
Q Consensus 1142 ARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl 1201 (1230)
|||++++|+|||||||||+||++||+.+++.+++..+++|+|+||||+++++.||+|+||
T Consensus 470 aRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 470 ARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999999999999988899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-76 Score=725.30 Aligned_cols=523 Identities=24% Similarity=0.294 Sum_probs=452.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 25 MVLGTVGAIGDGMSTNCLLVFASRIMNSLG-FGQTQSQQNHHENFLDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSER 103 (1230)
Q Consensus 25 ~~~~~~~~~~~~~~~p~~~~~~~~~id~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 103 (1230)
++++++++++.++..+..|+++++++|.+. .. .. ...+..+..++++++++..++.++..++..+.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~-------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (529)
T TIGR02857 5 LALLGLLGALGALLIIAQAWLLARVIDGLISAG-------EP---LAELLPALGALALAVLLRALLGWLGERAAARAAAA 74 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-------CC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777777777889999999763 21 00 12233344445566667788899999999999999
Q ss_pred HHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000909 104 QVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAF 183 (1230)
Q Consensus 104 ~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~~ 183 (1230)
+..++|.++|++++++|..+|++ .++| ++++|+++|++.+++.+...+..++..++.+++.++++++++|.++++++
T Consensus 75 ~~~~lr~~l~~~l~~~~~~~~~~-~~~g--~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l 151 (529)
T TIGR02857 75 VKSQLRERLLAAVAALGPGWLQG-RPSG--ELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILL 151 (529)
T ss_pred HHHHHHHHHHHHHHhCCchhhcc-CChH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999986 5556 99999999999999999988888898888888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 184 PTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLGIKQGTAKGLAV 263 (1230)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (1230)
+.+|+..++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+......
T Consensus 152 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (529)
T TIGR02857 152 LTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSS 231 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877778888888888899999999999999999999999999999999999999999888888777666655544
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 000909 264 GST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTEASIAASRIFDRIDRVPEIDGED 342 (1230)
Q Consensus 264 ~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~ 342 (1230)
... .+......++..++++.+..|.+++|.++++..+......|+..+...+..++++..+.+|+.++++.+++..+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~ 311 (529)
T TIGR02857 232 AVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA 311 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc
Confidence 443 3333333444455666777899999999999888888889999999999999999999999999998543221111
Q ss_pred CCCcccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecC
Q 000909 343 TKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIR 422 (1230)
Q Consensus 343 ~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~ 422 (1230)
. ......+.|+++||+|+|+++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+|++
T Consensus 312 --~-~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~ 387 (529)
T TIGR02857 312 --P-VTAAPAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLA 387 (529)
T ss_pred --C-CCCCCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehh
Confidence 1 111123579999999999853 346999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHH
Q 000909 423 RLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRI 502 (1230)
Q Consensus 423 ~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 502 (1230)
+++.+++|++|+||+|+|++|++||+|||.++.++.++++++++++.++++++++++|+|+||.+||+|.+||||||||+
T Consensus 388 ~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri 467 (529)
T TIGR02857 388 DADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRL 467 (529)
T ss_pred hCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHH
Confidence 99999999999999999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEE
Q 000909 503 AIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVV 564 (1230)
Q Consensus 503 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l 564 (1230)
+||||++++|+|+|||||||+||+++++.+.+.+.+..+++|+|+||||+++++.||+|++|
T Consensus 468 ~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 468 ALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999999999999999999988899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-76 Score=792.42 Aligned_cols=507 Identities=21% Similarity=0.281 Sum_probs=438.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHH
Q 000909 77 LYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPI 156 (1230)
Q Consensus 77 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~ 156 (1230)
.++++++++..++.++..++..+.+.+...++|.++++++++.|++||++ +++| +++||+++|++.+++.+...+..
T Consensus 1009 ~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~-~~~G--~ilnR~s~Di~~id~~l~~~~~~ 1085 (1522)
T TIGR00957 1009 SVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFER-TPSG--NLVNRFSKELDTVDSMIPPVIKM 1085 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhcc-CChH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777778888888889999999999999999999999999996 5656 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHH
Q 000909 157 FVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERR 236 (1230)
Q Consensus 157 ~~~~~~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 236 (1230)
++..++.+++.++++++.+|.+++++++++++++++..++.+..+...+...+..+...+.+.|+++|+++||+|++|+.
T Consensus 1086 ~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~ 1165 (1522)
T TIGR00957 1086 FMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQER 1165 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHH
Confidence 99999999999998888888877776666666666666777777777777777888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hcCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 237 IIDRYEAILDSTTKLGIKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVM-FKGETGGKIYAAGISFILSGLSLGSALPE 314 (1230)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~-~~~~~~g~~~~~~~~~~~~~~~l~~~~~~ 314 (1230)
+.+++.+..+...+..........+..... .+. ..++++.+...+. .+.+++|.+.+++.+...+..++..+...
T Consensus 1166 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~ 1242 (1522)
T TIGR00957 1166 FIHQSDLKVDENQKAYYPSIVANRWLAVRLECVG---NCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRM 1242 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888887777655444444333222 111 1223334444443 47789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCccc--CCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCC
Q 000909 315 LKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVL--DEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGAS 392 (1230)
Q Consensus 315 ~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~--~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~s 392 (1230)
+..+..+..|++|+.++++.+++.+.......++ .+.+|.|+|+||+|+|+++ .+++|+|+||+|+|||++||||+|
T Consensus 1243 ~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrT 1321 (1522)
T TIGR00957 1243 SSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRT 1321 (1522)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCC
Confidence 9999999999999999997665432111111111 2356889999999999754 246999999999999999999999
Q ss_pred CCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhH
Q 000909 393 GSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANA 472 (1230)
Q Consensus 393 GsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~ 472 (1230)
|||||||+++|.|+|+|++|+|.+||+|+++++.+++|++|++|||||.||+|||||||.... +.++++++++++.+++
T Consensus 1322 GsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-~~sdeei~~al~~a~l 1400 (1522)
T TIGR00957 1322 GAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-QYSDEEVWWALELAHL 1400 (1522)
T ss_pred CCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-CCCHHHHHHHHHHcCc
Confidence 999999999999999999999999999999999999999999999999999999999998332 5789999999999999
Q ss_pred HHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCc
Q 000909 473 HNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKL 552 (1230)
Q Consensus 473 ~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l 552 (1230)
++++.++|+|+||.+||+|.+||||||||+||||||+++|+|||||||||+||++|++.|++.|++..+++|+|+||||+
T Consensus 1401 ~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl 1480 (1522)
T TIGR00957 1401 KTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRL 1480 (1522)
T ss_pred HHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred hhhhccCEEEEEeCCeEEEecChhHHHhhcCcHHHHHHHH
Q 000909 553 STVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKL 592 (1230)
Q Consensus 553 ~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 592 (1230)
+++.+||+|+|||+|+|+|.|+|+||+++ ++.|+++++.
T Consensus 1481 ~ti~~~DrIlVld~G~IvE~G~~~eLl~~-~~~f~~l~~~ 1519 (1522)
T TIGR00957 1481 NTIMDYTRVIVLDKGEVAEFGAPSNLLQQ-RGIFYSMAKD 1519 (1522)
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHH
Confidence 99999999999999999999999999996 7999999864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-75 Score=718.25 Aligned_cols=536 Identities=20% Similarity=0.293 Sum_probs=458.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 662 KQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNFAYMGGRLTKRIR 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 741 (1230)
+.+...+++..+........++.+..+++....... ......+..+++++.++..++.+++.++....+.++..++|
T Consensus 6 ~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 82 (544)
T TIGR01842 6 STFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS---VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALN 82 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555556666777777775542111 11233345555566667778888899999999999999999
Q ss_pred HHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 742 LRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVAD-RVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLT 820 (1230)
Q Consensus 742 ~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~ 820 (1230)
.++|++++++|+.. .+...+++.+|++.++..+.. .+..++..++.++. +++++.++|.+++++++..|+.
T Consensus 83 ~~~~~~ll~~~~~~-------~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~li~l~~~~l~ 154 (544)
T TIGR01842 83 QPIFAASFSATLRR-------GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIY-LLVCFLLHPWIGILALGGAVVL 154 (544)
T ss_pred HHHHHHHhcCcccC-------ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999843 256788999999999988776 45555555555444 4567889999999888888877
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 821 ILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCL 900 (1230)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 900 (1230)
++..++..+..++..++..+..++..+.+.|.++|+++||+||.++.+.++|++..++..+...+.....+....+...+
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (544)
T TIGR01842 155 VGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYF 234 (544)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666666666677777778888999999999999999999999999999999998888887777777777777777
Q ss_pred HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCC
Q 000909 901 TFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGT 980 (1230)
Q Consensus 901 ~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~ 980 (1230)
..+..++++++|++++..|.+|+|.++++..+......++..+...+.++..+..+.+|+.++++.+++.+..
T Consensus 235 ~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~------- 307 (544)
T TIGR01842 235 RIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA------- 307 (544)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC-------
Confidence 7778888899999999999999999999999999999999999999999999999999999999765542211
Q ss_pred CCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCC
Q 000909 981 RGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRE 1060 (1230)
Q Consensus 981 ~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~ 1060 (1230)
.+.++..+.|+++||+|+||+. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+|+++
T Consensus 308 --~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~ 384 (544)
T TIGR01842 308 --MPLPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQ 384 (544)
T ss_pred --CCCCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhh
Confidence 0111234679999999999743 3469999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHhhcceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHH
Q 000909 1061 LDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIA 1140 (1230)
Q Consensus 1061 i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 1140 (1230)
++.+.+|++++||||||++|++|+||||.++++++++++++++++.++++++++++|+|+||.+|++|.+||||||||++
T Consensus 385 ~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~ 464 (544)
T TIGR01842 385 WDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIA 464 (544)
T ss_pred CCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHH
Confidence 99999999999999999999999999999887778999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCcEEEEecCHhHHhhc
Q 000909 1141 IARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1141 lARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~ 1218 (1230)
||||++++|+|||||||||+||+++++.+.+.+++.. +++|+|+||||++++..||+|++|++|+++|.|+|+||+++
T Consensus 465 lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 543 (544)
T TIGR01842 465 LARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543 (544)
T ss_pred HHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 9999999999999999999999999999999999875 68999999999999999999999999999999999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-75 Score=782.94 Aligned_cols=513 Identities=22% Similarity=0.290 Sum_probs=408.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhH
Q 000909 75 CSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKV 154 (1230)
Q Consensus 75 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~ 154 (1230)
+.+++++++++..++.+++.++..+.+.+...++|.+++++++++|++||++ +++| +++||+++|++.+++.+...+
T Consensus 955 ~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~-~~~G--~IlnR~s~Di~~id~~l~~~~ 1031 (1622)
T PLN03130 955 YNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHT-NPLG--RIINRFAKDLGDIDRNVAVFV 1031 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhcc-CCch--HHHHHHHHHHHHHHHHHHHHH
Confidence 3444566677777888888889899999999999999999999999999997 5667 999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccH
Q 000909 155 PIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAE 234 (1230)
Q Consensus 155 ~~~~~~~~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e 234 (1230)
..++..++.+++.++++++++|...+++++++.+++++..++.+..++..+......+...+.+.|+++|+++||+|+++
T Consensus 1032 ~~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~ 1111 (1622)
T PLN03130 1032 NMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAY 1111 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHH
Confidence 89999888888888888888874333332222222233334445555555556666778899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cc-----HHHHHHHHHHHHHHHHHH
Q 000909 235 RRIIDRYEAILDSTTKLGIKQGTAKGLAVGSTGLSFAIWAFLAWYGSHLVMFKG-ET-----GGKIYAAGISFILSGLSL 308 (1230)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~-----~g~~~~~~~~~~~~~~~l 308 (1230)
+++.+++.+..+...+..........+..... ..+...++++.+...+..+. .. .+.+..++.+......++
T Consensus 1112 ~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l--~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l 1189 (1622)
T PLN03130 1112 DRMAEINGRSMDNNIRFTLVNMSSNRWLAIRL--ETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLL 1189 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHH
Confidence 98877777666655443322221111111111 11111112222223233321 10 122222233444444556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCC--cccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEE
Q 000909 309 GSALPELKYFTEASIAASRIFDRIDRVPEIDGEDTKG--LVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSV 386 (1230)
Q Consensus 309 ~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~--~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~ 386 (1230)
..+......+..+..+++|+.++++.+++.+...+.. ....+.+|.|+|+||+|+|+++ .+++|+|+||+|+|||++
T Consensus 1190 ~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekV 1268 (1622)
T PLN03130 1190 TAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKV 1268 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEE
Confidence 6666667788999999999999998765533211111 1112346789999999999643 346999999999999999
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHH
Q 000909 387 ALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAA 466 (1230)
Q Consensus 387 ~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~ 466 (1230)
||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|++|||||.||+|||||||.++. +.++++++++
T Consensus 1269 aIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei~~A 1347 (1622)
T PLN03130 1269 GIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLWES 1347 (1622)
T ss_pred EEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999886 5789999999
Q ss_pred HHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 000909 467 ATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTL 546 (1230)
Q Consensus 467 ~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i 546 (1230)
++.++++++++++|+|+||.+||+|.+|||||||||||||||+++|+|||||||||+||++|++.|++.|++..+++|+|
T Consensus 1348 l~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI 1427 (1622)
T PLN03130 1348 LERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTML 1427 (1622)
T ss_pred HHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988899999
Q ss_pred EEecCchhhhccCEEEEEeCCeEEEecChhHHHhhcCcHHHHHHHHhh
Q 000909 547 VVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQR 594 (1230)
Q Consensus 547 ~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 594 (1230)
+||||++++.+||+|+||++|+|+|.|+|+||+++.++.|+++++.+.
T Consensus 1428 ~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1428 IIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred EEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 999999999999999999999999999999999865789999987654
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-77 Score=693.18 Aligned_cols=480 Identities=26% Similarity=0.398 Sum_probs=370.9
Q ss_pred cEEEEEEEEECCCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC----CceEEECCeecCCCCHHH
Q 000909 354 EIEFEHVKFSYPSRPD-SIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAD----DGIVRIDGVDIRRLQLKW 428 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~-~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~----~G~i~~~g~~i~~~~~~~ 428 (1230)
-++++|++..|..... ..+++||||++.+||++||||+|||||||+++.|.|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999999975422 25899999999999999999999999999999999999987 899999999999888765
Q ss_pred Hh----hheEEEccCcc-ccch--hHHHHHh----cCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchh--cCCCCCCC
Q 000909 429 VR----REMGLVSQEHA-LFGT--SIKDNIM----FGKLDATMDEVIAAATAANAHNFIRQLPEGYETKV--GERGALLS 495 (1230)
Q Consensus 429 ~r----~~i~~v~Q~~~-l~~~--ti~~Ni~----~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~--~~~g~~LS 495 (1230)
+| +.|+||||+|. .+|. ||.+-|. .... .+.++. ...+.+.++.. |+.... ...+.+||
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~-~~~~ea-----~~~a~elL~~V--gl~~~~~~~~yPheLS 156 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK-GSRAEA-----RKRAVELLEQV--GLPDPERRDRYPHQLS 156 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc-ccHHHH-----HHHHHHHHHHc--CCCChhhhccCCcccC
Confidence 43 57999999985 4543 6666554 2111 112211 12223344443 443322 55889999
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEe
Q 000909 496 GGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEI 572 (1230)
Q Consensus 496 gGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~ 572 (1230)
||||||+.||+||+.+|++||+||||++||+.++.+|.+.|+++. .|.++|+|||++..+.+ ||||+||++|+++|.
T Consensus 157 GG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~ 236 (539)
T COG1123 157 GGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVET 236 (539)
T ss_pred chHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999865 68999999999999977 999999999999999
Q ss_pred cChhHHHhhcCcHHHHHHHHhhcccCCCCCCCcccccccccccCCCCccccCCCCcccCCCCCCCCCCCCCCCCchHHHH
Q 000909 573 GTHNDLINRIDGHYAKMAKLQRQFSCDDQETIPETHVSSVTRSSGGRLSAARSSPAIFASPLPVIDSPQPVTYLPPSFFR 652 (1230)
Q Consensus 573 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (1230)
|+.+++++++...|.+..-.....
T Consensus 237 G~~~~i~~~p~hpYT~~Ll~a~p~-------------------------------------------------------- 260 (539)
T COG1123 237 GPTEEILSNPQHPYTRGLLAAVPR-------------------------------------------------------- 260 (539)
T ss_pred cCHHHHHhccCCcccHHHHhhCCC--------------------------------------------------------
Confidence 999999886443333211000000
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 653 LLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNFAYM 732 (1230)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1230)
T Consensus 261 -------------------------------------------------------------------------------- 260 (539)
T COG1123 261 -------------------------------------------------------------------------------- 260 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 733 GGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVV 812 (1230)
Q Consensus 733 ~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~ 812 (1230)
.+....
T Consensus 261 -----------------------~~~~~~--------------------------------------------------- 266 (539)
T COG1123 261 -----------------------LGDEKI--------------------------------------------------- 266 (539)
T ss_pred -----------------------cccccc---------------------------------------------------
Confidence 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 813 MIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGI 892 (1230)
Q Consensus 813 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (1230)
T Consensus 267 -------------------------------------------------------------------------------- 266 (539)
T COG1123 267 -------------------------------------------------------------------------------- 266 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCC
Q 000909 893 GMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPG 972 (1230)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~ 972 (1230)
..
T Consensus 267 ------------------------------------------------------------------------------~~ 268 (539)
T COG1123 267 ------------------------------------------------------------------------------IR 268 (539)
T ss_pred ------------------------------------------------------------------------------cc
Confidence 00
Q ss_pred CCCCCCCCCCCCcccccCcEEEEEEEEECCCCC--------CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccc
Q 000909 973 SSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRP--------DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFY 1044 (1230)
Q Consensus 973 ~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~--------~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~ 1044 (1230)
. . ...+.+...-++++|++.+|..+. ...+++||||++++||++||||+||||||||.++|+|+.
T Consensus 269 ~------~-~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~ 341 (539)
T COG1123 269 L------P-RRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLL 341 (539)
T ss_pred c------c-cccccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 0 0 000000112378999999997421 235899999999999999999999999999999999999
Q ss_pred cCCCCeEEECCee--cCCCChHHHhhcceEEcccccC--C-cccHHHHhccCC---CCC----CHHHHHHHHHHhchHHH
Q 000909 1045 DVEQGSVRVDGMD--VRELDVHWYRKHTALVSQEPVI--Y-AGNIRDNIVFGK---LDA----SENEVVEAARAANAHEF 1112 (1230)
Q Consensus 1045 ~p~~G~I~idG~d--i~~i~~~~lR~~i~~VpQdp~L--f-~gTIreNl~~g~---~~~----sd~ei~~al~~a~l~~~ 1112 (1230)
+|++|+|.++|.| .+.-....+|+++-+|+|||+- - ..||+++|.-.- ... ..+.+.+.++.+++..-
T Consensus 342 ~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~ 421 (539)
T COG1123 342 PPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPE 421 (539)
T ss_pred CCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHH
Confidence 9999999999977 3333356688999999999963 2 469999986221 011 11234455666665431
Q ss_pred HHhccccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCch
Q 000909 1113 ISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLN 1190 (1230)
Q Consensus 1113 i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ 1190 (1230)
.+......||||||||+||||||..+|++||+|||||+||+-+.+.|.+.|.++.+ |.|.|+|||+++
T Consensus 422 ----------~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~ 491 (539)
T COG1123 422 ----------FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA 491 (539)
T ss_pred ----------HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH
Confidence 23455678999999999999999999999999999999999999999999988753 799999999999
Q ss_pred hhhh-cCEEEEEeCcEEEEecCHhHHhhc-ccccHHHh
Q 000909 1191 TIKK-LDSIALVADGRVVERGTYAQLTHM-RGAFFNLA 1226 (1230)
Q Consensus 1191 ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~-~g~y~~l~ 1226 (1230)
.++. ||||+||++|+|||.|+.+++.++ +..|-+..
T Consensus 492 vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L 529 (539)
T COG1123 492 VVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKL 529 (539)
T ss_pred HHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHH
Confidence 9985 799999999999999999999988 66676643
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-74 Score=712.96 Aligned_cols=531 Identities=21% Similarity=0.297 Sum_probs=452.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 26 VLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQV 105 (1230)
Q Consensus 26 ~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 105 (1230)
++.++++++..+.....|+++++++|...... +. ..+..+.+.++++.++..++.++..++..+.+.++.
T Consensus 9 ~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~------~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (544)
T TIGR01842 9 IIVGLFSFVINILMLAPPLYMLQVYDRVLTSG------SV----PTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLD 78 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC------ch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555678899999654210 11 123333444445556667888899999999999999
Q ss_pred HHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000909 106 VKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSE-KVPIFVMNASVFISGLAFSTYFSWRLSLVAFP 184 (1230)
Q Consensus 106 ~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~~~ 184 (1230)
.++|.++|+|++++|+.. .+ +..+++++|++.+++.+.. .+..++..++.++ .++++++++|.+++++++
T Consensus 79 ~~lr~~~~~~ll~~~~~~------~~--~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~ 149 (544)
T TIGR01842 79 GALNQPIFAASFSATLRR------GK--IDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALG 149 (544)
T ss_pred HHHHHHHHHHHhcCcccC------cc--chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHH
Confidence 999999999999999832 23 5688899999999998876 4444555444444 456789999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 185 TLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLGIKQGTAKGLAVG 264 (1230)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (1230)
.+|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+..+....
T Consensus 150 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (544)
T TIGR01842 150 GAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSN 229 (544)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777777788888888889999999999999999999999999999999999999999988888777776666555
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCC
Q 000909 265 ST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTEASIAASRIFDRIDRVPEIDGEDT 343 (1230)
Q Consensus 265 ~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~ 343 (1230)
.. .+.....++++++|++++..|.+|+|.++++..++.....|+..+...+..++++..+.+|+.++++.+++.+..
T Consensus 230 ~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-- 307 (544)
T TIGR01842 230 LSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA-- 307 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC--
Confidence 44 444455567778999999999999999999999999999999999999999999999999999999765443211
Q ss_pred CCcccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCC
Q 000909 344 KGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRR 423 (1230)
Q Consensus 344 ~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~ 423 (1230)
...+...+.|+++||+|+|++. ++++|+|+||+++|||+++|+||||||||||+++|+|+++|++|+|.+||+++.+
T Consensus 308 --~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~ 384 (544)
T TIGR01842 308 --MPLPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQ 384 (544)
T ss_pred --CCCCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhh
Confidence 1112234679999999999743 3569999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHH
Q 000909 424 LQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIA 503 (1230)
Q Consensus 424 ~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~ 503 (1230)
++.+++|+.++||||+|++|++|++|||.++.++.++++++++++.++++++++++|+|++|.+|++|.+||||||||++
T Consensus 385 ~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~ 464 (544)
T TIGR01842 385 WDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIA 464 (544)
T ss_pred CCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHH
Confidence 99999999999999999999999999999877778899999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhccCEEEEEeCCeEEEecChhHHHh
Q 000909 504 IARAIIKNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 504 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
||||++++|+++|||||||+||+++++.+.+.+.+.. +++|+|+||||++.+..||+|++|++|++++.|+|+|+++
T Consensus 465 lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 465 LARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999999999999999998875 6899999999999999999999999999999999999875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-74 Score=770.17 Aligned_cols=509 Identities=20% Similarity=0.258 Sum_probs=422.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHH
Q 000909 81 YLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMN 160 (1230)
Q Consensus 81 ~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~ 160 (1230)
++.++..++.++..+.....+.+...++|.++++++++.|+.||++ +++| +++||+++|++.+++.+...+..++..
T Consensus 1006 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~-~~~G--~ilnR~s~Di~~id~~l~~~l~~~~~~ 1082 (1560)
T PTZ00243 1006 GIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDT-TPLG--RILNRFSRDIDILDNTLPMSYLYLLQC 1082 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccC-CCcc--HHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3333444444555555556677778899999999999999999997 6667 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHH
Q 000909 161 ASVFISGLAFSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDR 240 (1230)
Q Consensus 161 ~~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~ 240 (1230)
++.+++.++++++.+|.+.+++++++.++..+..++.+..+...+......+...+.+.|+++|+++||+|+.|+.+.++
T Consensus 1083 ~~~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~ 1162 (1560)
T PTZ00243 1083 LFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQE 1162 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHH
Confidence 99999999999988885544444333344444555666667777777778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH--HHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 241 YEAILDSTTKLGIKQGTAKGLAVGST-GLSFAIWAFLAWYGSH--LVMFKGETGGKIYAAGISFILSGLSLGSALPELKY 317 (1230)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~--~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~ 317 (1230)
|.+..+...+...+......+..... ++..+...++.+++.. +...+.+++|.+..++.+...+..++..+...+..
T Consensus 1163 ~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~ 1242 (1560)
T PTZ00243 1163 ALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVAT 1242 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888877666544444433322 2222222222233322 22334568888877778878888899999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCC------------------------CCC-c----ccCCccccEEEEEEEEECCCCC
Q 000909 318 FTEASIAASRIFDRIDRVPEIDGED------------------------TKG-L----VLDEVRGEIEFEHVKFSYPSRP 368 (1230)
Q Consensus 318 ~~~~~~s~~ri~~~l~~~~~~~~~~------------------------~~~-~----~~~~~~~~i~~~~v~~~y~~~~ 368 (1230)
+..++.+++|+.++++..++++... ... . +.++..|.|+|+||+|+|+++
T Consensus 1243 le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~- 1321 (1560)
T PTZ00243 1243 VEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG- 1321 (1560)
T ss_pred HHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-
Confidence 9999999999999997543321000 000 0 011235789999999999753
Q ss_pred CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheEEEccCccccchhHH
Q 000909 369 DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIK 448 (1230)
Q Consensus 369 ~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~ 448 (1230)
.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++||||||||.||+||||
T Consensus 1322 ~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIr 1401 (1560)
T PTZ00243 1322 LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVR 1401 (1560)
T ss_pred CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHH
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccC-CCEEEEeCCCCCCCHH
Q 000909 449 DNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKN-PVILLLDEATSALDSE 527 (1230)
Q Consensus 449 ~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~-~~illlDE~ts~lD~~ 527 (1230)
|||..+. +.+++++++|++.+++++++.++|+|+||.+||+|.+|||||||||||||||+++ |+|||||||||+||++
T Consensus 1402 eNIdp~~-~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~ 1480 (1560)
T PTZ00243 1402 QNVDPFL-EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPA 1480 (1560)
T ss_pred HHhCccc-CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHH
Confidence 9998653 6789999999999999999999999999999999999999999999999999996 8999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEeCCeEEEecChhHHHhhcCcHHHHHHHHhh
Q 000909 528 SETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQR 594 (1230)
Q Consensus 528 ~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 594 (1230)
|++.|++.|++..+++|+|+||||++++.+||+|+||++|+|+|.|+|+||+++.++.|+++++.+.
T Consensus 1481 te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1481 LDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALG 1547 (1560)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 9999999999988899999999999999999999999999999999999999866899999987643
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-74 Score=773.19 Aligned_cols=515 Identities=21% Similarity=0.289 Sum_probs=412.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhh
Q 000909 74 KCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEK 153 (1230)
Q Consensus 74 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~ 153 (1230)
.+...+++++++..++.+++.++....+.+...++|.+++++++++|++||++ +++| +++||+++|++.+++.+...
T Consensus 951 ~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~-~~~G--~ilnr~s~Di~~id~~l~~~ 1027 (1495)
T PLN03232 951 FYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHT-NPTG--RVINRFSKDIGDIDRNVANL 1027 (1495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCc-CCch--HHHHHhHhhHHHHHHHHHHH
Confidence 34455666777777888889999999999999999999999999999999996 5666 99999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcc
Q 000909 154 VPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSA 233 (1230)
Q Consensus 154 ~~~~~~~~~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 233 (1230)
+..++..++.+++.+++++.+++...++++++..++++...++.+..+...+......+...+.+.|+++|+++||+|++
T Consensus 1028 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~ 1107 (1495)
T PLN03232 1028 MNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKA 1107 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCc
Confidence 88888888888888888777775433332222222222233333445556666677778889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCc----c-HHHHHHHHHHHHHHHHH
Q 000909 234 ERRIIDRYEAILDSTTKLGIKQGTAKGLAVGSTGLSFAIWAFLAWYGSHLVMF-KGE----T-GGKIYAAGISFILSGLS 307 (1230)
Q Consensus 234 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~----~-~g~~~~~~~~~~~~~~~ 307 (1230)
++++.+++++..+...+..........+... .+......++.+.+...+.. +.+ . .+.+..++.+......+
T Consensus 1108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 1185 (1495)
T PLN03232 1108 YDRMAKINGKSMDNNIRFTLANTSSNRWLTI--RLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTL 1185 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHH
Confidence 9988887777666555543332222221111 11111112222223333332 221 1 12222234455556667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCC--cccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCE
Q 000909 308 LGSALPELKYFTEASIAASRIFDRIDRVPEIDGEDTKG--LVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKS 385 (1230)
Q Consensus 308 l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~--~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~ 385 (1230)
+..+...+..++.+..+++|+.++++.+++.+...... ....+.+|.|+|+||+|+|+++ .+++|+|+||+|+|||+
T Consensus 1186 l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~Gek 1264 (1495)
T PLN03232 1186 LSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEK 1264 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCE
Confidence 78888888999999999999999998766533211111 1112345789999999999643 35699999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHH
Q 000909 386 VALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIA 465 (1230)
Q Consensus 386 ~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~ 465 (1230)
+|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|++|||||.||+|||||||.+++ +.+++++++
T Consensus 1265 vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~ 1343 (1495)
T PLN03232 1265 VGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWE 1343 (1495)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999875 678999999
Q ss_pred HHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeE
Q 000909 466 AATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTT 545 (1230)
Q Consensus 466 ~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~ 545 (1230)
+++.++++++++++|+|+||.+||+|.+||||||||+||||||+++|+|||||||||+||++|++.|++.|++..+++|+
T Consensus 1344 al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~Tv 1423 (1495)
T PLN03232 1344 ALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTM 1423 (1495)
T ss_pred HHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred EEEecCchhhhccCEEEEEeCCeEEEecChhHHHhhcCcHHHHHHHHhhc
Q 000909 546 LVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQ 595 (1230)
Q Consensus 546 i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 595 (1230)
|+||||++++.+||+|+||++|+|+|.|+|+||+++.++.|+++++.+..
T Consensus 1424 I~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~ 1473 (1495)
T PLN03232 1424 LVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGP 1473 (1495)
T ss_pred EEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence 99999999999999999999999999999999998645699999876543
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-76 Score=640.44 Aligned_cols=490 Identities=33% Similarity=0.446 Sum_probs=420.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHH
Q 000909 95 YCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASV-FISGLAFSTY 173 (1230)
Q Consensus 95 ~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~-~i~~~~~~~~ 173 (1230)
.++...++.....+-.+.|.|+.++++.|+-++.+.|....+.|=++.++.+-.. .+...+..++- ...+.++...
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~---~l~~i~P~~~Ei~l~~vi~~~~ 80 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRW---ILFNILPTLVEISLVAVILWRV 80 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHH---HHHHhhHHHHHHHHHHHHHHhh
Confidence 3456677778888888999999999999998743333333444444445544443 33333333332 2334455667
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 000909 174 FSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLGI 253 (1230)
Q Consensus 174 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 253 (1230)
++|+.+++.++++.+++++............++..++-++.++...+++-+..+||.|+.|+.+..+|+..++.+.+...
T Consensus 81 ~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~ 160 (497)
T COG5265 81 YGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAI 160 (497)
T ss_pred cccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHH
Confidence 89999999998888888877777766677777888888899999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000909 254 KQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTEASIAASRIFDRI 332 (1230)
Q Consensus 254 ~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l 332 (1230)
|.....++..... .+...........+...+..|.+|+|+++....++.+...|+..+......+.++..-+++.++.+
T Consensus 161 k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl 240 (497)
T COG5265 161 KVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLL 240 (497)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhh
Confidence 8655444433322 444444556666777778899999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCcccC-CccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC
Q 000909 333 DRVPEIDGEDTKGLVLD-EVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADD 411 (1230)
Q Consensus 333 ~~~~~~~~~~~~~~~~~-~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~ 411 (1230)
+.+.+..+... .++.. ...|.+.|+||+|.|.. .+++|+|+||++++|+++|+|||||+||||++++|.|||++++
T Consensus 241 ~~~~~v~d~pd-a~~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~s 317 (497)
T COG5265 241 DVEAEVSDAPD-APPLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNS 317 (497)
T ss_pred ccchhhccCCC-CccccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcC
Confidence 87766544322 12222 34578999999999964 5689999999999999999999999999999999999999999
Q ss_pred ceEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCC
Q 000909 412 GIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERG 491 (1230)
Q Consensus 412 G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 491 (1230)
|.|.+||+|+++...+++|+.||+||||..||++|+..||.+|+|+++++|+..+++.++++++|+++|+||+|.+||+|
T Consensus 318 G~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerg 397 (497)
T COG5265 318 GSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERG 397 (497)
T ss_pred ceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEeCCeEEE
Q 000909 492 ALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVE 571 (1230)
Q Consensus 492 ~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~ 571 (1230)
-.||||||||+||||+++++|+||+|||+|||||.+||+.|+.+|++..+|+|.++|+|||+++-+||.|+||++|+|+|
T Consensus 398 lklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~e 477 (497)
T COG5265 398 LKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVE 477 (497)
T ss_pred eeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHHhhcCcHHHHHHH
Q 000909 572 IGTHNDLINRIDGHYAKMAK 591 (1230)
Q Consensus 572 ~g~~~~l~~~~~~~~~~~~~ 591 (1230)
.|+|+||+++ +|.|++||.
T Consensus 478 rg~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 478 RGTHEELLAA-GGLYAEMWR 496 (497)
T ss_pred cCcHHHHHHc-CChHHHHhc
Confidence 9999999996 999999984
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-74 Score=717.70 Aligned_cols=497 Identities=23% Similarity=0.359 Sum_probs=367.9
Q ss_pred cEEEEEEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecC----------
Q 000909 354 EIEFEHVKFSYPSRP-DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIR---------- 422 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~---------- 422 (1230)
-|+++|++++|+... +.++|+||||++++||++|||||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 589999999996321 246999999999999999999999999999999999999999999999997552
Q ss_pred CCCHH---HHh-hheEEEccCc--cccc-hhHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCccc---chhcC
Q 000909 423 RLQLK---WVR-REMGLVSQEH--ALFG-TSIKDNIMFGKL---DATMDEVIAAATAANAHNFIRQLPEGYE---TKVGE 489 (1230)
Q Consensus 423 ~~~~~---~~r-~~i~~v~Q~~--~l~~-~ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~---t~~~~ 489 (1230)
+.+.. .+| ++||||+|+| .+++ .||+||+.++.. ..+..+.. ..+.+.++.+ |+. .....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~~ 164 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAM-----VEAKRMLDQV--RIPEAQTILSR 164 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHC--CCCChhhHHhC
Confidence 12222 233 4799999998 5776 499999987521 11222211 2233445555 663 35677
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeC
Q 000909 490 RGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDN 566 (1230)
Q Consensus 490 ~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~ 566 (1230)
...+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.++++. .|+|+|+|||+++.+.. ||+|++|++
T Consensus 165 ~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~ 244 (623)
T PRK10261 165 YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQ 244 (623)
T ss_pred CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeC
Confidence 889999999999999999999999999999999999999999999999864 38999999999999865 999999999
Q ss_pred CeEEEecChhHHHhhcCcHHHHHHHHhhcccCCCCCCCcccccccccccCCCCccccCCCCcccCCCCCCCCCCCCCCCC
Q 000909 567 GCLVEIGTHNDLINRIDGHYAKMAKLQRQFSCDDQETIPETHVSSVTRSSGGRLSAARSSPAIFASPLPVIDSPQPVTYL 646 (1230)
Q Consensus 567 G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (1230)
|++++.|+++++.......|.+.... .... . .. .
T Consensus 245 G~i~~~g~~~~~~~~~~~~~~~~l~~----~~~~------~------~~----~-------------------------- 278 (623)
T PRK10261 245 GEAVETGSVEQIFHAPQHPYTRALLA----AVPQ------L------GA----M-------------------------- 278 (623)
T ss_pred CeecccCCHHHhhcCCCChhhhhhhh----ccCc------c------cc----c--------------------------
Confidence 99999999888764311111100000 0000 0 00 0
Q ss_pred chHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 647 PPSFFRLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQH 726 (1230)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1230)
. ..
T Consensus 279 -----------------------------------------------~-~~----------------------------- 281 (623)
T PRK10261 279 -----------------------------------------------K-GL----------------------------- 281 (623)
T ss_pred -----------------------------------------------c-cc-----------------------------
Confidence 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 727 YNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVA 806 (1230)
Q Consensus 727 ~~~~~~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 806 (1230)
..+ .-+. ...
T Consensus 282 -----------------------~~~-~~~~--~~~-------------------------------------------- 291 (623)
T PRK10261 282 -----------------------DYP-RRFP--LIS-------------------------------------------- 291 (623)
T ss_pred -----------------------cCC-cccc--ccc--------------------------------------------
Confidence 000 0000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHH
Q 000909 807 WKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKK 886 (1230)
Q Consensus 807 ~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~ 886 (1230)
T Consensus 292 -------------------------------------------------------------------------------- 291 (623)
T PRK10261 292 -------------------------------------------------------------------------------- 291 (623)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000909 887 SWLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDR 966 (1230)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~ 966 (1230)
...
T Consensus 292 -----------------------------------------------------------------------------~~~ 294 (623)
T PRK10261 292 -----------------------------------------------------------------------------LEH 294 (623)
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 000
Q ss_pred CCCCCCCCCCCCCCCCCCcccccCcEEEEEEEEECCCCC--------CcccccceeEEEeCCcEEEEEcCCCCCHHHHHH
Q 000909 967 QSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRP--------DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIG 1038 (1230)
Q Consensus 967 ~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~--------~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~ 1038 (1230)
....... .... .......-++++||+++|+.+. ..++|+||||+|++||++||+|+||||||||++
T Consensus 295 ~~~~~~~-----~~~~-~~~~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk 368 (623)
T PRK10261 295 PAKQEPP-----IEQD-TVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGR 368 (623)
T ss_pred ccccCcc-----cccc-cccCCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHH
Confidence 0000000 0000 0000012489999999996321 235999999999999999999999999999999
Q ss_pred HHhccccCCCCeEEECCeecCCCChH---HHhhcceEEcccc--cCCc-ccHHHHhccCC--CCC-CH----HHHHHHHH
Q 000909 1039 LIQRFYDVEQGSVRVDGMDVRELDVH---WYRKHTALVSQEP--VIYA-GNIRDNIVFGK--LDA-SE----NEVVEAAR 1105 (1230)
Q Consensus 1039 lL~rl~~p~~G~I~idG~di~~i~~~---~lR~~i~~VpQdp--~Lf~-gTIreNl~~g~--~~~-sd----~ei~~al~ 1105 (1230)
+|.|+.+|++|+|.++|.++...+.. .+|++|+||||+| .++. .||++|+.++. ... .. +++.+.++
T Consensus 369 ~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~ 448 (623)
T PRK10261 369 ALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLE 448 (623)
T ss_pred HHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999877643 4577899999998 3665 59999997531 111 11 33445555
Q ss_pred HhchH-HHHHhccccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeE
Q 000909 1106 AANAH-EFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTT 1182 (1230)
Q Consensus 1106 ~a~l~-~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~Tv 1182 (1230)
..++. +.. ......||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|++..+ |.|+
T Consensus 449 ~~gL~~~~~-----------~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tv 517 (623)
T PRK10261 449 RVGLLPEHA-----------WRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAY 517 (623)
T ss_pred HcCCCHHHh-----------hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 55552 222 233457999999999999999999999999999999999999999999988643 7899
Q ss_pred EEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHhhc-ccccHH
Q 000909 1183 IVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTHM-RGAFFN 1224 (1230)
Q Consensus 1183 I~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~-~g~y~~ 1224 (1230)
|+|||+++.+.. ||||+||++|+|+|.|+++++..+ ...|.+
T Consensus 518 i~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~~ 561 (623)
T PRK10261 518 LFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTR 561 (623)
T ss_pred EEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHHHH
Confidence 999999999875 799999999999999999999865 334543
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-74 Score=705.81 Aligned_cols=462 Identities=23% Similarity=0.368 Sum_probs=360.5
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC--CCceEEECCeecCCCCHHH-Hh
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDA--DDGIVRIDGVDIRRLQLKW-VR 430 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~i~~~g~~i~~~~~~~-~r 430 (1230)
-|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... +|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 4899999999963 4599999999999999999999999999999999999996 8999999999998776543 46
Q ss_pred hheEEEccCccccch-hHHHHHhcCCCC-----CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHH
Q 000909 431 REMGLVSQEHALFGT-SIKDNIMFGKLD-----ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAI 504 (1230)
Q Consensus 431 ~~i~~v~Q~~~l~~~-ti~~Ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 504 (1230)
+.++||+|++.++.. |++||+.++... .+.++.. ..+.+.++.+ |++........+||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMY-----LRAQKLLAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHH-----HHHHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 789999999988865 999999986421 1112211 1234456666 66666677788999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhhc
Q 000909 505 ARAIIKNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRI 582 (1230)
Q Consensus 505 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 582 (1230)
||||+.+|++||||||||+||+.+...+.+.|.++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~- 233 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTED- 233 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCHH-
Confidence 999999999999999999999999999999998863 58899999999999876 999999999999987764432110
Q ss_pred CcHHHHHHHHhhcccCCCCCCCcccccccccccCCCCccccCCCCcccCCCCCCCCCCCCCCCCchHHHHHHhhhhhhhH
Q 000909 583 DGHYAKMAKLQRQFSCDDQETIPETHVSSVTRSSGGRLSAARSSPAIFASPLPVIDSPQPVTYLPPSFFRLLSLNAPEWK 662 (1230)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (1230)
+...
T Consensus 234 -----~~~~----------------------------------------------------------------------- 237 (506)
T PRK13549 234 -----DIIT----------------------------------------------------------------------- 237 (506)
T ss_pred -----HHHH-----------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 663 QGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNFAYMGGRLTKRIRL 742 (1230)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 742 (1230)
.+
T Consensus 238 ----------------------------~~-------------------------------------------------- 239 (506)
T PRK13549 238 ----------------------------MM-------------------------------------------------- 239 (506)
T ss_pred ----------------------------Hh--------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 743 RMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTIL 822 (1230)
Q Consensus 743 ~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~ 822 (1230)
+. ..
T Consensus 240 -------------~~--~~------------------------------------------------------------- 243 (506)
T PRK13549 240 -------------VG--RE------------------------------------------------------------- 243 (506)
T ss_pred -------------hC--cC-------------------------------------------------------------
Confidence 00 00
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 823 CFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTF 902 (1230)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 902 (1230)
T Consensus 244 -------------------------------------------------------------------------------- 243 (506)
T PRK13549 244 -------------------------------------------------------------------------------- 243 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCC
Q 000909 903 MSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRG 982 (1230)
Q Consensus 903 ~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~ 982 (1230)
.. +.. +.. ...
T Consensus 244 ------------------~~------------------------------------------~~~---~~~-----~~~- 254 (506)
T PRK13549 244 ------------------LT------------------------------------------ALY---PRE-----PHT- 254 (506)
T ss_pred ------------------cc------------------------------------------ccc---ccc-----ccC-
Confidence 00 000 000 000
Q ss_pred CCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-CCCCeEEECCeecCCC
Q 000909 983 SKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD-VEQGSVRVDGMDVREL 1061 (1230)
Q Consensus 983 ~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-p~~G~I~idG~di~~i 1061 (1230)
+...-|+++||+++|+.+.+.++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++...
T Consensus 255 ----~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~ 330 (506)
T PRK13549 255 ----IGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIR 330 (506)
T ss_pred ----CCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCC
Confidence 00124899999999953223459999999999999999999999999999999999999 5999999999998755
Q ss_pred Ch-HHHhhcceEEcccc---cCCc-ccHHHHhccCCC-C------CCHHHHHHHHHHhchHHHHHhccccccc-cccCCC
Q 000909 1062 DV-HWYRKHTALVSQEP---VIYA-GNIRDNIVFGKL-D------ASENEVVEAARAANAHEFISSLKDGYET-ECGERG 1128 (1230)
Q Consensus 1062 ~~-~~lR~~i~~VpQdp---~Lf~-gTIreNl~~g~~-~------~sd~ei~~al~~a~l~~~i~~lp~gldt-~vge~G 1128 (1230)
+. +.+|++++||||+| .+|. .|+.||+.++.. . .+.++. ...+.+.++.+ |++. ......
T Consensus 331 ~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~ 403 (506)
T PRK13549 331 NPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAE-----LKTILESIQRL--KVKTASPELAI 403 (506)
T ss_pred CHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHH-----HHHHHHHHHhc--CccCCCccccc
Confidence 43 45677899999997 3554 599999986421 0 011111 11223344443 3321 234455
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCcEE
Q 000909 1129 VQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGRV 1206 (1230)
Q Consensus 1129 ~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~I 1206 (1230)
..||||||||++||||++.+|+||||||||++||+.+.+.+.+.|++.. +|+|||+|||+++.+.. ||++++|++|++
T Consensus 404 ~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i 483 (506)
T PRK13549 404 ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483 (506)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 6899999999999999999999999999999999999999999998864 48999999999999865 799999999999
Q ss_pred EEecCHhHHh
Q 000909 1207 VERGTYAQLT 1216 (1230)
Q Consensus 1207 ve~Gt~~eLl 1216 (1230)
+..|+++++.
T Consensus 484 ~~~~~~~~~~ 493 (506)
T PRK13549 484 KGDLINHNLT 493 (506)
T ss_pred EEEeccccCC
Confidence 9999988764
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-74 Score=702.88 Aligned_cols=465 Identities=28% Similarity=0.446 Sum_probs=360.0
Q ss_pred cEEEEEEEEECCCC-CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecCCCCHH
Q 000909 354 EIEFEHVKFSYPSR-PDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDA-----DDGIVRIDGVDIRRLQLK 427 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~-~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~i~~~~~~ 427 (1230)
-|+++|++++|++. .++++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 124699999999999999999999999999999999999987 799999999999877643
Q ss_pred H---Hh-hheEEEccCcc--ccc-hhHHHHHhcCC---CCCCHHHHHHHHHHHhHHHHHHhCCCcccc---hhcCCCCCC
Q 000909 428 W---VR-REMGLVSQEHA--LFG-TSIKDNIMFGK---LDATMDEVIAAATAANAHNFIRQLPEGYET---KVGERGALL 494 (1230)
Q Consensus 428 ~---~r-~~i~~v~Q~~~--l~~-~ti~~Ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t---~~~~~g~~L 494 (1230)
. +| +++|||+|++. +++ .|+++|+.++. ...+.++. ...+.+.++.+ |++. .......+|
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~~~~L 157 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAA-----RGEILNCLDRV--GIRQAAKRLTDYPHQL 157 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHC--CCCChHHHHhhCCccc
Confidence 2 33 57999999985 444 49999987421 01122211 12233445555 5543 346778899
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEE
Q 000909 495 SGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVE 571 (1230)
Q Consensus 495 SgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~ 571 (1230)
|||||||++|||||+.+|++||||||||+||+.+...+.+.++++. .|+|+|+|||+++.+.. ||+|++|++|++++
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~ 237 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE 237 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998863 38999999999999875 99999999999999
Q ss_pred ecChhHHHhhcCcHHHHHHHHhhcccCCCCCCCcccccccccccCCCCccccCCCCcccCCCCCCCCCCCCCCCCchHHH
Q 000909 572 IGTHNDLINRIDGHYAKMAKLQRQFSCDDQETIPETHVSSVTRSSGGRLSAARSSPAIFASPLPVIDSPQPVTYLPPSFF 651 (1230)
Q Consensus 572 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (1230)
.|+++++.......+.
T Consensus 238 ~g~~~~~~~~~~~~~~---------------------------------------------------------------- 253 (529)
T PRK15134 238 QNRAATLFSAPTHPYT---------------------------------------------------------------- 253 (529)
T ss_pred eCCHHHHhhCCCCHHH----------------------------------------------------------------
Confidence 9987766431000000
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 652 RLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNFAY 731 (1230)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (1230)
.
T Consensus 254 ----------------------------------------------~--------------------------------- 254 (529)
T PRK15134 254 ----------------------------------------------Q--------------------------------- 254 (529)
T ss_pred ----------------------------------------------H---------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 732 MGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAV 811 (1230)
Q Consensus 732 ~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l 811 (1230)
.+ +....
T Consensus 255 -----------~~-----------~~~~~--------------------------------------------------- 261 (529)
T PRK15134 255 -----------KL-----------LNSEP--------------------------------------------------- 261 (529)
T ss_pred -----------HH-----------HHhCc---------------------------------------------------
Confidence 00 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 812 VMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAG 891 (1230)
Q Consensus 812 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 891 (1230)
T Consensus 262 -------------------------------------------------------------------------------- 261 (529)
T PRK15134 262 -------------------------------------------------------------------------------- 261 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC
Q 000909 892 IGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIP 971 (1230)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~ 971 (1230)
...+. +
T Consensus 262 -------------------------------------------------------------------------~~~~~-~ 267 (529)
T PRK15134 262 -------------------------------------------------------------------------SGDPV-P 267 (529)
T ss_pred -------------------------------------------------------------------------ccccc-c
Confidence 00000 0
Q ss_pred CCCCCCCCCCCCCcccccCcEEEEEEEEECCCC--------CCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc
Q 000909 972 GSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSR--------PDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRF 1043 (1230)
Q Consensus 972 ~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~--------~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl 1043 (1230)
. ...+ ..-|+++||+++|+.. .+.++|+|+||+|++||++||+||||||||||+++|+|+
T Consensus 268 ~------~~~~------~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl 335 (529)
T PRK15134 268 L------PEPA------SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRL 335 (529)
T ss_pred c------CCCC------CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 0 0000 1138999999999621 124699999999999999999999999999999999999
Q ss_pred ccCCCCeEEECCeecCCCChHH---HhhcceEEcccc--cCCc-ccHHHHhccCCC----CCC----HHHHHHHHHHhch
Q 000909 1044 YDVEQGSVRVDGMDVRELDVHW---YRKHTALVSQEP--VIYA-GNIRDNIVFGKL----DAS----ENEVVEAARAANA 1109 (1230)
Q Consensus 1044 ~~p~~G~I~idG~di~~i~~~~---lR~~i~~VpQdp--~Lf~-gTIreNl~~g~~----~~s----d~ei~~al~~a~l 1109 (1230)
++ ++|+|.+||.++...+... +|++++||||+| .+|. .|++||+.++.. ..+ ++++.++++..++
T Consensus 336 ~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 414 (529)
T PRK15134 336 IN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGL 414 (529)
T ss_pred CC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCC
Confidence 84 8999999999998776543 478899999998 3665 599999976411 111 1234444444444
Q ss_pred HHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEcc
Q 000909 1110 HEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAH 1187 (1230)
Q Consensus 1110 ~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaH 1187 (1230)
.+ ........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||
T Consensus 415 ~~----------~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH 484 (529)
T PRK15134 415 DP----------ETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISH 484 (529)
T ss_pred CH----------HHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeC
Confidence 21 11234456799999999999999999999999999999999999999999999874 3789999999
Q ss_pred Cchhhhh-cCEEEEEeCcEEEEecCHhHHhhc
Q 000909 1188 RLNTIKK-LDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1188 rl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1218 (1230)
+++.+.. ||+|++|++|+|++.|+++++++.
T Consensus 485 d~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 516 (529)
T PRK15134 485 DLHVVRALCHQVIVLRQGEVVEQGDCERVFAA 516 (529)
T ss_pred CHHHHHHhcCeEEEEECCEEEEEcCHHHHhcC
Confidence 9999875 899999999999999999999865
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-72 Score=709.52 Aligned_cols=512 Identities=23% Similarity=0.339 Sum_probs=442.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhh
Q 000909 74 KCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEK 153 (1230)
Q Consensus 74 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~ 153 (1230)
.+...+.+++++..++..++.+.+...+.+...+++.++++++++.|++|||. +++| +|+||+++|++.+++.++..
T Consensus 859 ~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdt-TP~G--RILNRFSkD~~~vD~~Lp~~ 935 (1381)
T KOG0054|consen 859 FYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDT-TPTG--RILNRFSKDIDTVDVLLPFT 935 (1381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCC-CCcc--chhhhcccchHHHHHhhHHH
Confidence 45566777788888888899999999999999999999999999999999997 6777 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcc
Q 000909 154 VPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSA 233 (1230)
Q Consensus 154 ~~~~~~~~~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 233 (1230)
+..++..++.+++.++++.+..|++.++++++..+++.+..++.+..+...+-.....+...+++.|+++|+.|||+|+.
T Consensus 936 ~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~ 1015 (1381)
T KOG0054|consen 936 LEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGK 1015 (1381)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccc
Confidence 99999999999999999999999988888888888888888888888888888888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHH
Q 000909 234 ERRIIDRYEAILDSTTKLGIKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSAL 312 (1230)
Q Consensus 234 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~ 312 (1230)
|++|.+++....+...+...-......+...-. .+..+.......+. .+...+..++|.+-..+.|.+.....+..+.
T Consensus 1016 ~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~-vl~~~~~~~~g~vGLslsyal~lt~~l~~~v 1094 (1381)
T KOG0054|consen 1016 EERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFA-VLLPSGLISPGLVGLSLSYALQLTGLLQWLV 1094 (1381)
T ss_pred cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHccCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888776544332222221111 22222111111111 1111222567888888888888888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCC--CcccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEc
Q 000909 313 PELKYFTEASIAASRIFDRIDRVPEIDGEDTK--GLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVG 390 (1230)
Q Consensus 313 ~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG 390 (1230)
.....+...+.|++|+.++.+.++|.+...+. +++..+.+|+|+|+|++.+|..+ .++||+||||+|+|||++||||
T Consensus 1095 R~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVG 1173 (1381)
T KOG0054|consen 1095 RQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVG 1173 (1381)
T ss_pred HHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeC
Confidence 99999999999999999999866552111111 22335678999999999999744 4679999999999999999999
Q ss_pred CCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHH
Q 000909 391 ASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAA 470 (1230)
Q Consensus 391 ~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~ 470 (1230)
++|||||||+++|.|+.+|.+|+|.|||.||.+++++++|++++++||||.||+||+|.|+.-- .+.+|+++|+|++.+
T Consensus 1174 RTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf-~e~sD~~IW~ALe~~ 1252 (1381)
T KOG0054|consen 1174 RTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPF-DEYSDDEIWEALERC 1252 (1381)
T ss_pred CCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcc-cccCHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999732 357899999999999
Q ss_pred hHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEec
Q 000909 471 NAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAH 550 (1230)
Q Consensus 471 ~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH 550 (1230)
++.++++++|+|+|+.+.|+|.|+|-||||.+||||||+++++||+|||||+++|++|+..||+.|++..++||||.|+|
T Consensus 1253 ~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAH 1332 (1381)
T KOG0054|consen 1253 QLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAH 1332 (1381)
T ss_pred ChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhccCEEEEEeCCeEEEecChhHHHhhcCcHHHHHHH
Q 000909 551 KLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAK 591 (1230)
Q Consensus 551 ~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 591 (1230)
|++++.++|||+|||+|+++|.|+|++|+++.++.|+++..
T Consensus 1333 Rl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~ 1373 (1381)
T KOG0054|consen 1333 RLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLK 1373 (1381)
T ss_pred ccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHH
Confidence 99999999999999999999999999999987788865443
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-71 Score=685.24 Aligned_cols=539 Identities=17% Similarity=0.160 Sum_probs=435.9
Q ss_pred HHHHHHhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 649 SFFRLLSLNA-PEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHY 727 (1230)
Q Consensus 649 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1230)
..++++++.+ +.++.+.++++++.+.+......++.+..+++.... . .. .....++++.++..++.++..+
T Consensus 4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~---~---~~--~~~~~~~~~~~~~~~~~~~~~~ 75 (555)
T TIGR01194 4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENF---L---GQ--GSLFSFGGLCLLALLFRIGADI 75 (555)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---c---cc--hHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777 777777777777766666665555555554432100 0 00 0111233445566678888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 728 NFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAW 807 (1230)
Q Consensus 728 ~~~~~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 807 (1230)
+....+.+...++|.++|++++++|+.||+ ++++|++++|+++|++.++.++.. +..++..++.++++++++++++|
T Consensus 76 ~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~--~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~ 152 (555)
T TIGR01194 76 FPAYAGMHIIANLRIALCEKILGAPIEEID--RRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSV 152 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHH--hcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999998 678999999999999999998864 66777778888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHH--HHHHHHHHHHHHHHHHHHH
Q 000909 808 KLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAG--KVLQIFDEAQEEPRKQARK 885 (1230)
Q Consensus 808 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~--~~~~~~~~~~~~~~~~~~~ 885 (1230)
.+++++++++|+.++...+..+.......+.++..++..+.+.|.+.|++++|+|+.++ ...+++++..++..+...+
T Consensus 153 ~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (555)
T TIGR01194 153 PMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHII 232 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999988888877777666666666666777777888999999999999999999954 5567788877777776665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000909 886 KSWLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILD 965 (1230)
Q Consensus 886 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~ 965 (1230)
..........+...+..+..++.+++++.. |.++.|.++++..+...+..|+..+...+.++.++..+++|+.++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~ 309 (555)
T TIGR01194 233 EILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGE 309 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 554444444444444444455555555543 78999999999999999999999999999999999999999999986
Q ss_pred cCCCCCCCCCCCCCCCC--CCcccccCcEEEEEEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHh
Q 000909 966 RQSLIPGSSQAGDGTRG--SKLQKISGKIEMRRVDFAYPSRP--DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQ 1041 (1230)
Q Consensus 966 ~~~~~~~~~~~~~~~~~--~~~~~~~g~I~f~~Vsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~ 1041 (1230)
.+++.+...+..+.... .++....++|+|+||+|+|++.+ ++++|+|+||++++||++|||||||||||||+++|+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~ 389 (555)
T TIGR01194 310 RFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFC 389 (555)
T ss_pred hhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 42221111000000000 01112346899999999997532 236999999999999999999999999999999999
Q ss_pred ccccCCCCeEEECCeecCCCChHHHhhcceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhcccccc
Q 000909 1042 RFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYE 1121 (1230)
Q Consensus 1042 rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gld 1121 (1230)
|+|+|++|+|.+||+|+++++.+++|+++++|||||++|++|+++|+ .+++++++++++++.++++++++++|+|||
T Consensus 390 g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~ 466 (555)
T TIGR01194 390 GLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGFS 466 (555)
T ss_pred CCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccccC
Confidence 99999999999999999999999999999999999999999999996 467889999999999999999999999999
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHH-h-cCCCeEEEEccCchhhhhcCEEE
Q 000909 1122 TECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDR-I-MMGRTTIVVAHRLNTIKKLDSIA 1199 (1230)
Q Consensus 1122 t~vge~G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~-~-~~~~TvI~IaHrl~ti~~~D~I~ 1199 (1230)
|. .+|||||||||+||||++++|+|||||||||+||++||+.+++.+.+ . .+++|+|+||||++++..||+|+
T Consensus 467 t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~ 541 (555)
T TIGR01194 467 TT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQII 541 (555)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEE
Confidence 94 68999999999999999999999999999999999999999987643 3 36899999999999999999999
Q ss_pred EEeCcEEEEe
Q 000909 1200 LVADGRVVER 1209 (1230)
Q Consensus 1200 vl~~G~Ive~ 1209 (1230)
||++|+|+|.
T Consensus 542 ~l~~G~i~~~ 551 (555)
T TIGR01194 542 KLAAGCIVKD 551 (555)
T ss_pred EEECCEEEEe
Confidence 9999999975
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-71 Score=681.77 Aligned_cols=534 Identities=18% Similarity=0.209 Sum_probs=436.5
Q ss_pred chHHHHHHhcC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHHHHHHHH
Q 000909 8 NNIGIIFRFAD-RTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGLAV 86 (1230)
Q Consensus 8 ~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (1230)
..+++++++++ +++ ..++++++++++.++.....+++++.+++..... .. ..+ .+++++.++.
T Consensus 3 ~~~~~l~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-------~~----~~~----~~~~~~~~~~ 66 (555)
T TIGR01194 3 AAIGEILALLRSPFP-AITAFSIALGLAGGLAIIALLASINNAIHEENFL-------GQ----GSL----FSFGGLCLLA 66 (555)
T ss_pred chHHHHHHHHhhccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-------cc----hHH----HHHHHHHHHH
Confidence 45677888887 654 4455666666666666666667777777632100 00 011 1233345556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHH
Q 000909 87 MVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFIS 166 (1230)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~ 166 (1230)
.++.++..++.+..+.++..++|.++|+|++++|+++|++ .++| ++++|+++|++.+++++.. ++.++..++++++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~-~~~G--~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~ 142 (555)
T TIGR01194 67 LLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDR-RGAH--NLIPLLTHDIDQINAFLFI-FPPIAIALAIFFF 142 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHh-cCcc--hhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 6788899999999999999999999999999999999997 5667 9999999999999998864 7778888888888
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHH--HHHHHHHHH
Q 000909 167 GLAFSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAER--RIIDRYEAI 244 (1230)
Q Consensus 167 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~--~~~~~~~~~ 244 (1230)
.++++++++|.+++++++++|+.+++..++.++.++..++.++..++.++.+.|.++|++++|+|+.++ ...+++++.
T Consensus 143 ~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~ 222 (555)
T TIGR01194 143 CIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQES 222 (555)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHH
Confidence 999999999999999988888888877777788888888888999999999999999999999999954 567888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 245 LDSTTKLGIKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTEASI 323 (1230)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 323 (1230)
.++..+...+.........++. .+......+.++++++. +.+++|.++++..+......|+..+...+..++++..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~ 299 (555)
T TIGR01194 223 ANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQI 299 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777666555444333332 22233333344444432 6889999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCC--CC-CCCC-CCc---ccCCccccEEEEEEEEECCCCC--CCccccceeEEEeCCCEEEEEcCCCC
Q 000909 324 AASRIFDRIDRVPE--ID-GEDT-KGL---VLDEVRGEIEFEHVKFSYPSRP--DSIVLKDFNLKVKAGKSVALVGASGS 394 (1230)
Q Consensus 324 s~~ri~~~l~~~~~--~~-~~~~-~~~---~~~~~~~~i~~~~v~~~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGs 394 (1230)
+++|+.++++...+ .. +... ... .+....+.|+++||+|+|++.+ ++++|+|+||++++||++||||||||
T Consensus 300 s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGs 379 (555)
T TIGR01194 300 ACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGC 379 (555)
T ss_pred HHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCC
Confidence 99999999763211 11 0000 000 1112246799999999997532 23699999999999999999999999
Q ss_pred cHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHH
Q 000909 395 GKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHN 474 (1230)
Q Consensus 395 GKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~ 474 (1230)
|||||+++|+|+|+|++|+|.+||.++++++.+++|++++||+||+++|++|+++|+ .++.++++++++++.+++++
T Consensus 380 GKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~ 456 (555)
T TIGR01194 380 GKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIAD 456 (555)
T ss_pred CHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCch
Confidence 999999999999999999999999999999999999999999999999999999995 35677889999999999999
Q ss_pred HHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHH-Hh-cCCCeEEEEecCc
Q 000909 475 FIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALD-QA-SLGRTTLVVAHKL 552 (1230)
Q Consensus 475 ~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~-~~-~~~~t~i~itH~l 552 (1230)
+++.+|+|++|. .+||||||||++||||++++|+|+|||||||+||+++++.+.+.+. .. .+++|+|+||||+
T Consensus 457 ~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~ 531 (555)
T TIGR01194 457 KVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDD 531 (555)
T ss_pred hhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH
Confidence 999999999994 7899999999999999999999999999999999999999988764 33 4689999999999
Q ss_pred hhhhccCEEEEEeCCeEEEe
Q 000909 553 STVRNADLIAVVDNGCLVEI 572 (1230)
Q Consensus 553 ~~~~~~d~i~~l~~G~i~~~ 572 (1230)
+++..||+|++|++|+++|.
T Consensus 532 ~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 532 QYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999874
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-73 Score=694.90 Aligned_cols=459 Identities=22% Similarity=0.354 Sum_probs=356.3
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHH-Hhhh
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKW-VRRE 432 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~-~r~~ 432 (1230)
-|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4899999999963 35999999999999999999999999999999999999999999999999998777654 3467
Q ss_pred eEEEccCccccch-hHHHHHhcCCCCC---------CHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHH
Q 000909 433 MGLVSQEHALFGT-SIKDNIMFGKLDA---------TMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRI 502 (1230)
Q Consensus 433 i~~v~Q~~~l~~~-ti~~Ni~~~~~~~---------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 502 (1230)
++||+|++.++.. |++||+.++.... ..++. ...+.+.++.+ |++........+||||||||+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREM-----RVRAAMMLLRV--GLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHH-----HHHHHHHHHHc--CCCCCcccchhhCCHHHHHHH
Confidence 9999999988865 9999998763210 11111 12234455555 666566777889999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 503 AIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 503 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
+|||||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 99999999999999999999999999999999998864 48999999999999876 99999999999998887655422
Q ss_pred hcCcHHHHHHHHhhcccCCCCCCCcccccccccccCCCCccccCCCCcccCCCCCCCCCCCCCCCCchHHHHHHhhhhhh
Q 000909 581 RIDGHYAKMAKLQRQFSCDDQETIPETHVSSVTRSSGGRLSAARSSPAIFASPLPVIDSPQPVTYLPPSFFRLLSLNAPE 660 (1230)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (1230)
. +....
T Consensus 235 ~------~~~~~-------------------------------------------------------------------- 240 (510)
T PRK09700 235 D------DIVRL-------------------------------------------------------------------- 240 (510)
T ss_pred H------HHHHH--------------------------------------------------------------------
Confidence 1 00000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 661 WKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNFAYMGGRLTKRI 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 740 (1230)
.
T Consensus 241 -------------------------------~------------------------------------------------ 241 (510)
T PRK09700 241 -------------------------------M------------------------------------------------ 241 (510)
T ss_pred -------------------------------h------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 741 RLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLT 820 (1230)
Q Consensus 741 ~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~ 820 (1230)
+. .. .
T Consensus 242 ---------------~~--~~-~--------------------------------------------------------- 246 (510)
T PRK09700 242 ---------------VG--RE-L--------------------------------------------------------- 246 (510)
T ss_pred ---------------cC--CC-c---------------------------------------------------------
Confidence 00 00 0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 821 ILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCL 900 (1230)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 900 (1230)
.
T Consensus 247 -----------~-------------------------------------------------------------------- 247 (510)
T PRK09700 247 -----------Q-------------------------------------------------------------------- 247 (510)
T ss_pred -----------c--------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCC
Q 000909 901 TFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGT 980 (1230)
Q Consensus 901 ~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~ 980 (1230)
. ..++..+.. ..
T Consensus 248 ---------------------------------------------------------~------~~~~~~~~~-----~~ 259 (510)
T PRK09700 248 ---------------------------------------------------------N------RFNAMKENV-----SN 259 (510)
T ss_pred ---------------------------------------------------------c------ccccccccc-----cc
Confidence 0 000000000 00
Q ss_pred CCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCC
Q 000909 981 RGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRE 1060 (1230)
Q Consensus 981 ~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~ 1060 (1230)
. .....|+++|+++.|. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++..
T Consensus 260 ~-----~~~~~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~ 329 (510)
T PRK09700 260 L-----AHETVFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISP 329 (510)
T ss_pred C-----CCCcEEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCC
Confidence 0 0011499999999772 28999999999999999999999999999999999999999999999999876
Q ss_pred CCh-HHHhhcceEEcccc---cCCc-ccHHHHhccCCCC-----------CCHHHHHHHHHHhchHHHHHhcccccc-cc
Q 000909 1061 LDV-HWYRKHTALVSQEP---VIYA-GNIRDNIVFGKLD-----------ASENEVVEAARAANAHEFISSLKDGYE-TE 1123 (1230)
Q Consensus 1061 i~~-~~lR~~i~~VpQdp---~Lf~-gTIreNl~~g~~~-----------~sd~ei~~al~~a~l~~~i~~lp~gld-t~ 1123 (1230)
.+. +.+|++++||||++ .+|. -|+++|+.++... ....+. ...+.+.++.+ |+. ..
T Consensus 330 ~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~ 402 (510)
T PRK09700 330 RSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE-----QRTAENQRELL--ALKCHS 402 (510)
T ss_pred CCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHH-----HHHHHHHHHhc--CCCCCC
Confidence 544 45678899999984 5675 4999999865210 011110 11122333333 332 12
Q ss_pred ccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEE
Q 000909 1124 CGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIK-KLDSIALV 1201 (1230)
Q Consensus 1124 vge~G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~vl 1201 (1230)
.......||||||||++|||||+++|+|||||||||+||+.+.+.+.+.|++.. +|+|+|+|||+++.+. .||+|++|
T Consensus 403 ~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l 482 (510)
T PRK09700 403 VNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVF 482 (510)
T ss_pred ccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEE
Confidence 334456799999999999999999999999999999999999999999999864 4889999999999886 47999999
Q ss_pred eCcEEEEecCHhH
Q 000909 1202 ADGRVVERGTYAQ 1214 (1230)
Q Consensus 1202 ~~G~Ive~Gt~~e 1214 (1230)
++|++++.+++.+
T Consensus 483 ~~G~i~~~~~~~~ 495 (510)
T PRK09700 483 CEGRLTQILTNRD 495 (510)
T ss_pred ECCEEEEEecCcc
Confidence 9999999887633
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-72 Score=608.71 Aligned_cols=470 Identities=28% Similarity=0.426 Sum_probs=367.0
Q ss_pred cEEEEEEEEECCC-CCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecCCCCHH
Q 000909 354 EIEFEHVKFSYPS-RPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDA-----DDGIVRIDGVDIRRLQLK 427 (1230)
Q Consensus 354 ~i~~~~v~~~y~~-~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~i~~~~~~ 427 (1230)
-++++|++..|.. .....++++|||+|++||++||||+||||||-..+.++|+++. .+|+|.++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 4788888888752 2345699999999999999999999999999999999999874 479999999999999887
Q ss_pred HHhh----heEEEccCcc--ccch-hHHHHH----hcCCCCCCHHHHHHHHHHHhHHHHHHhCCCccc---chhcCCCCC
Q 000909 428 WVRR----EMGLVSQEHA--LFGT-SIKDNI----MFGKLDATMDEVIAAATAANAHNFIRQLPEGYE---TKVGERGAL 493 (1230)
Q Consensus 428 ~~r~----~i~~v~Q~~~--l~~~-ti~~Ni----~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~---t~~~~~g~~ 493 (1230)
.+|. +|+++||||. |-+- ||..-| .+-.. +..++..+.+.+.++.. |+. ..+...+.+
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg------~~~~~Ar~r~lelL~~V--gI~~p~~rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRG------LSRAAARARALELLELV--GIPEPEKRLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhc------ccHHHHHHHHHHHHHHc--CCCchhhhhhhCCcc
Confidence 7764 8999999995 3222 554444 33211 11122223333344433 442 346778899
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEE
Q 000909 494 LSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLV 570 (1230)
Q Consensus 494 LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~ 570 (1230)
|||||||||.||.||+.+|++||-||||.|||......|.+.++++. .|..+++|||+|..+++ ||||+||.+|+++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 99999999999999999999999999999999999999999999864 58999999999999987 9999999999999
Q ss_pred EecChhHHHhhcCcHHHHHHHHhhcccCCCCCCCcccccccccccCCCCccccCCCCcccCCCCCCCCCCCCCCCCchHH
Q 000909 571 EIGTHNDLINRIDGHYAKMAKLQRQFSCDDQETIPETHVSSVTRSSGGRLSAARSSPAIFASPLPVIDSPQPVTYLPPSF 650 (1230)
Q Consensus 571 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (1230)
|.|+.+++...+...|.+..-...
T Consensus 238 E~~~t~~lF~~PqHpYTr~Ll~ae-------------------------------------------------------- 261 (534)
T COG4172 238 ETGTTETLFAAPQHPYTRKLLAAE-------------------------------------------------------- 261 (534)
T ss_pred ecCcHHHHhhCCCChHHHHHHhcC--------------------------------------------------------
Confidence 999999888765555544321100
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 651 FRLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNFA 730 (1230)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1230)
T Consensus 262 -------------------------------------------------------------------------------- 261 (534)
T COG4172 262 -------------------------------------------------------------------------------- 261 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 731 YMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLA 810 (1230)
Q Consensus 731 ~~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 810 (1230)
T Consensus 262 -------------------------------------------------------------------------------- 261 (534)
T COG4172 262 -------------------------------------------------------------------------------- 261 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 811 VVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLA 890 (1230)
Q Consensus 811 l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (1230)
T Consensus 262 -------------------------------------------------------------------------------- 261 (534)
T COG4172 262 -------------------------------------------------------------------------------- 261 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 000909 891 GIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLI 970 (1230)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~ 970 (1230)
|.
T Consensus 262 -----------------------------------------------------------------------------P~- 263 (534)
T COG4172 262 -----------------------------------------------------------------------------PS- 263 (534)
T ss_pred -----------------------------------------------------------------------------CC-
Confidence 00
Q ss_pred CCCCCCCCCCCCCCcccccCcEEEEEEEEECCCCC--------CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhc
Q 000909 971 PGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRP--------DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 971 ~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~--------~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1042 (1230)
+...+.+....--++.+||...||-+. ...++++|||+.++||++||||.|||||||+-.+|+|
T Consensus 264 --------g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allr 335 (534)
T COG4172 264 --------GDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLR 335 (534)
T ss_pred --------CCCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHh
Confidence 000000000111255556665554221 1237999999999999999999999999999999999
Q ss_pred cccCCCCeEEECCeecCCCChHH---HhhcceEEccccc--CC-cccHHHHhccC----CCCCC----HHHHHHHHHHhc
Q 000909 1043 FYDVEQGSVRVDGMDVRELDVHW---YRKHTALVSQEPV--IY-AGNIRDNIVFG----KLDAS----ENEVVEAARAAN 1108 (1230)
Q Consensus 1043 l~~p~~G~I~idG~di~~i~~~~---lR~~i~~VpQdp~--Lf-~gTIreNl~~g----~~~~s----d~ei~~al~~a~ 1108 (1230)
+.+++ |+|.++|.||...+.+. +|+++.+|+|||+ |= ..||.+=|.=| .|..+ ++.+.+|++.+|
T Consensus 336 L~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVG 414 (534)
T COG4172 336 LIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVG 414 (534)
T ss_pred hcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcC
Confidence 99976 99999999999888654 6899999999996 21 23665555433 33333 456788899998
Q ss_pred hHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEc
Q 000909 1109 AHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVA 1186 (1230)
Q Consensus 1109 l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~Ia 1186 (1230)
++.-..+ .-+..+|||||||||||||+.-+|++++||||||+||..-++.|.+.++++. .+-+-++||
T Consensus 415 LDp~~r~----------RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFIS 484 (534)
T COG4172 415 LDPATRN----------RYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFIS 484 (534)
T ss_pred CChhHhh----------cCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 8665432 2345799999999999999999999999999999999999999999999864 477999999
Q ss_pred cCchhhh-hcCEEEEEeCcEEEEecCHhHHhhc-ccccHH
Q 000909 1187 HRLNTIK-KLDSIALVADGRVVERGTYAQLTHM-RGAFFN 1224 (1230)
Q Consensus 1187 Hrl~ti~-~~D~I~vl~~G~Ive~Gt~~eLl~~-~g~y~~ 1224 (1230)
|+|..++ -||+|+||.+|+|||+|+-++++++ +..|-+
T Consensus 485 HDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT~ 524 (534)
T COG4172 485 HDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTR 524 (534)
T ss_pred ccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHHH
Confidence 9999997 4799999999999999999999988 445543
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-73 Score=694.62 Aligned_cols=458 Identities=26% Similarity=0.423 Sum_probs=353.0
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC--CCCCceEEEC---------------
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFY--DADDGIVRID--------------- 417 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~--~~~~G~i~~~--------------- 417 (1230)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 578999999963 35999999999999999999999999999999999996 7999999997
Q ss_pred --------CeecC-------CCC---HHHHhhheEEEccC-ccccc-hhHHHHHhcCCC--CCCHHHHHHHHHHHhHHHH
Q 000909 418 --------GVDIR-------RLQ---LKWVRREMGLVSQE-HALFG-TSIKDNIMFGKL--DATMDEVIAAATAANAHNF 475 (1230)
Q Consensus 418 --------g~~i~-------~~~---~~~~r~~i~~v~Q~-~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~ 475 (1230)
|.++. ..+ ...+|+.++||+|+ +.+|+ .|++||+.++.. ....++.. ..+.+.
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~ 152 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAV-----GRAVDL 152 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHH
Confidence 33331 111 13457789999998 57776 499999987521 11222211 223445
Q ss_pred HHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCch
Q 000909 476 IRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLS 553 (1230)
Q Consensus 476 i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~ 553 (1230)
++.+ |++........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|+|||+++
T Consensus 153 l~~~--gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~ 230 (520)
T TIGR03269 153 IEMV--QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230 (520)
T ss_pred HHHc--CChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 6666 77766777889999999999999999999999999999999999999999999998863 3899999999999
Q ss_pred hhhc-cCEEEEEeCCeEEEecChhHHHhhcCcHHHHHHHHhhcccCCCCCCCcccccccccccCCCCccccCCCCcccCC
Q 000909 554 TVRN-ADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQFSCDDQETIPETHVSSVTRSSGGRLSAARSSPAIFAS 632 (1230)
Q Consensus 554 ~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (1230)
.+.. ||+|++|++|++++.|+++++... +.
T Consensus 231 ~~~~~~d~i~~l~~G~i~~~g~~~~~~~~----~~--------------------------------------------- 261 (520)
T TIGR03269 231 VIEDLSDKAIWLENGEIKEEGTPDEVVAV----FM--------------------------------------------- 261 (520)
T ss_pred HHHHhcCEEEEEeCCEEeeecCHHHHHHH----HH---------------------------------------------
Confidence 9875 999999999999887765543210 00
Q ss_pred CCCCCCCCCCCCCCchHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHH
Q 000909 633 PLPVIDSPQPVTYLPPSFFRLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFC 712 (1230)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1230)
T Consensus 262 -------------------------------------------------------------------------------- 261 (520)
T TIGR03269 262 -------------------------------------------------------------------------------- 261 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000909 713 SLSLISLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTT 792 (1230)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~ 792 (1230)
. .
T Consensus 262 --------------------------------------------~--~-------------------------------- 263 (520)
T TIGR03269 262 --------------------------------------------E--G-------------------------------- 263 (520)
T ss_pred --------------------------------------------h--h--------------------------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHH
Q 000909 793 SAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIF 872 (1230)
Q Consensus 793 ~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~ 872 (1230)
+ .
T Consensus 264 --------------~------------------------~---------------------------------------- 265 (520)
T TIGR03269 264 --------------V------------------------S---------------------------------------- 265 (520)
T ss_pred --------------c------------------------h----------------------------------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 873 DEAQEEPRKQARKKSWLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAK 952 (1230)
Q Consensus 873 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 952 (1230)
T Consensus 266 -------------------------------------------------------------------------------- 265 (520)
T TIGR03269 266 -------------------------------------------------------------------------------- 265 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCcccccCcEEEEEEEEECCC--CCCcccccceeEEEeCCcEEEEEcCCC
Q 000909 953 GSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPS--RPDALVLRQFSMEVKPGTSVGLVGKSG 1030 (1230)
Q Consensus 953 ~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~--~~~~~vL~~vsl~I~~Ge~vaIVG~SG 1030 (1230)
++ .... + . .. ...-|+++||+++|++ ....++|+|+||+|++||++||+||||
T Consensus 266 ------~~----~~~~--~-~-----~~-------~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NG 320 (520)
T TIGR03269 266 ------EV----EKEC--E-V-----EV-------GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSG 320 (520)
T ss_pred ------hh----cccc--c-c-----CC-------CCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCC
Confidence 00 0000 0 0 00 0114999999999963 112469999999999999999999999
Q ss_pred CCHHHHHHHHhccccCCCCeEEEC-Ce---ecCCCC---hHHHhhcceEEcccccCCcc-cHHHHhccCCC-CCC----H
Q 000909 1031 CGKSTVIGLIQRFYDVEQGSVRVD-GM---DVRELD---VHWYRKHTALVSQEPVIYAG-NIRDNIVFGKL-DAS----E 1097 (1230)
Q Consensus 1031 SGKSTL~~lL~rl~~p~~G~I~id-G~---di~~i~---~~~lR~~i~~VpQdp~Lf~g-TIreNl~~g~~-~~s----d 1097 (1230)
||||||+++|+|+++|++|+|.++ |. ++...+ ...+|++++||||++.+|.. |+++|+.++.. ... +
T Consensus 321 sGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~ 400 (520)
T TIGR03269 321 AGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELAR 400 (520)
T ss_pred CCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHH
Confidence 999999999999999999999996 64 344333 23567789999999988874 99999975311 111 1
Q ss_pred HHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc
Q 000909 1098 NEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM 1177 (1230)
Q Consensus 1098 ~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~ 1177 (1230)
+++.++++..++.+. ..+.........||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++..
T Consensus 401 ~~~~~~l~~~~l~~~------~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~ 474 (520)
T TIGR03269 401 MKAVITLKMVGFDEE------KAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAR 474 (520)
T ss_pred HHHHHHHHhCCCCCc------cchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 233444444444210 00001234456799999999999999999999999999999999999999999998874
Q ss_pred --CCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHhhc
Q 000909 1178 --MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1178 --~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1218 (1230)
.+.|+|+|||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 475 ~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 518 (520)
T TIGR03269 475 EEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVEE 518 (520)
T ss_pred HHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 37899999999999875 799999999999999999988653
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-72 Score=686.90 Aligned_cols=454 Identities=21% Similarity=0.345 Sum_probs=354.5
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHH-Hhhh
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKW-VRRE 432 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~-~r~~ 432 (1230)
-|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 3899999999963 45999999999999999999999999999999999999999999999999987665443 4568
Q ss_pred eEEEccCccccch-hHHHHHhcCCCC------CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHH
Q 000909 433 MGLVSQEHALFGT-SIKDNIMFGKLD------ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIA 505 (1230)
Q Consensus 433 i~~v~Q~~~l~~~-ti~~Ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 505 (1230)
++||+|++.++.. |++||+.++... .+.++.. ..+.+.++.+ |+.........+||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMY-----AEADKLLARL--NLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHH-----HHHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHH
Confidence 9999999988865 999999986421 1111111 1233455665 666666777789999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhhcC
Q 000909 506 RAIIKNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRID 583 (1230)
Q Consensus 506 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 583 (1230)
|||+.+|++|||||||++||+.+...+.+.|++.. +|+|+|+|||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-- 231 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTED-- 231 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCHH--
Confidence 99999999999999999999999999999998763 57899999999999865 999999999999987654432110
Q ss_pred cHHHHHHHHhhcccCCCCCCCcccccccccccCCCCccccCCCCcccCCCCCCCCCCCCCCCCchHHHHHHhhhhhhhHH
Q 000909 584 GHYAKMAKLQRQFSCDDQETIPETHVSSVTRSSGGRLSAARSSPAIFASPLPVIDSPQPVTYLPPSFFRLLSLNAPEWKQ 663 (1230)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (1230)
.+..
T Consensus 232 ----~~~~------------------------------------------------------------------------ 235 (501)
T PRK10762 232 ----SLIE------------------------------------------------------------------------ 235 (501)
T ss_pred ----HHHH------------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 664 GLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNFAYMGGRLTKRIRLR 743 (1230)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 743 (1230)
..
T Consensus 236 ---------------------------~~--------------------------------------------------- 237 (501)
T PRK10762 236 ---------------------------MM--------------------------------------------------- 237 (501)
T ss_pred ---------------------------Hh---------------------------------------------------
Confidence 00
Q ss_pred HHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 744 MLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILC 823 (1230)
Q Consensus 744 l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~ 823 (1230)
+. ..
T Consensus 238 ------------~~--~~-------------------------------------------------------------- 241 (501)
T PRK10762 238 ------------VG--RK-------------------------------------------------------------- 241 (501)
T ss_pred ------------cC--CC--------------------------------------------------------------
Confidence 00 00
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 824 FYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFM 903 (1230)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 903 (1230)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK10762 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCC
Q 000909 904 SWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRGS 983 (1230)
Q Consensus 904 ~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~ 983 (1230)
. ....+..+ .
T Consensus 242 --------------------------------------------------------~---~~~~~~~~-------~---- 251 (501)
T PRK10762 242 --------------------------------------------------------L---EDQYPRLD-------K---- 251 (501)
T ss_pred --------------------------------------------------------c---cccccccc-------c----
Confidence 0 00000000 0
Q ss_pred CcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCCh
Q 000909 984 KLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDV 1063 (1230)
Q Consensus 984 ~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~ 1063 (1230)
++..--|+++||++ ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.
T Consensus 252 --~~~~~~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~ 321 (501)
T PRK10762 252 --APGEVRLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSP 321 (501)
T ss_pred --CCCCcEEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCH
Confidence 00011388999984 27999999999999999999999999999999999999999999999999987665
Q ss_pred -HHHhhcceEEcccc---cCCc-ccHHHHhccCCCC--------CCHHHHHHHHHHhchHHHHHhcccccc-ccccCCCC
Q 000909 1064 -HWYRKHTALVSQEP---VIYA-GNIRDNIVFGKLD--------ASENEVVEAARAANAHEFISSLKDGYE-TECGERGV 1129 (1230)
Q Consensus 1064 -~~lR~~i~~VpQdp---~Lf~-gTIreNl~~g~~~--------~sd~ei~~al~~a~l~~~i~~lp~gld-t~vge~G~ 1129 (1230)
+.+|++++||||+| .+|. .|+++|+.++... .+.++. ...+.++++.+ |++ ........
T Consensus 322 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~ 394 (501)
T PRK10762 322 QDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-----QQAVSDFIRLF--NIKTPSMEQAIG 394 (501)
T ss_pred HHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHH-----HHHHHHHHHhc--CCCCCCccCchh
Confidence 34678899999997 3544 6999999864210 111111 11123334433 332 22345566
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCcEEE
Q 000909 1130 QLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGRVV 1207 (1230)
Q Consensus 1130 ~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Iv 1207 (1230)
.||||||||++||||++.+|+||||||||++||+.+.+.+.+.|++.. +|+|+|+|||+++.+.. ||+|++|++|+++
T Consensus 395 ~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 474 (501)
T PRK10762 395 LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRIS 474 (501)
T ss_pred hCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEE
Confidence 899999999999999999999999999999999999999999999875 48899999999999865 7999999999999
Q ss_pred EecCHhHHh
Q 000909 1208 ERGTYAQLT 1216 (1230)
Q Consensus 1208 e~Gt~~eLl 1216 (1230)
+.|+++++.
T Consensus 475 ~~~~~~~~~ 483 (501)
T PRK10762 475 GEFTREQAT 483 (501)
T ss_pred EEeccccCC
Confidence 999887754
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-71 Score=614.67 Aligned_cols=529 Identities=22% Similarity=0.295 Sum_probs=457.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000909 671 AIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILT 750 (1230)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~ 750 (1230)
+.+........+++.-++-+....+. ..+.+....++.+++.++..++-+++..++.+++.++-..++..+|...++
T Consensus 32 S~~INiL~L~~~lyMLQVyDRVL~S~---s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~ 108 (580)
T COG4618 32 SAVINLLALTGPLYMLQVYDRVLPSR---SVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFS 108 (580)
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccCC---CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHh
Confidence 33334444444454445444443221 112223333444455567778888999999999999999999999999987
Q ss_pred CCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 751 FEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVL 830 (1230)
Q Consensus 751 ~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~ 830 (1230)
+|..- +..|+=..- -+|.++++.++...-...+....+.-..+.++|.+++++.++.++...+++...++..+.
T Consensus 109 ~~l~~-----~~~g~~~Q~-LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~ 182 (580)
T COG4618 109 APLLR-----RGSGDGLQP-LRDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERA 182 (580)
T ss_pred hHHhh-----cCCCccccc-hhhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77652 233332222 379999999998876666666667777778888899999999998888888888888888
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 831 LSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMSWALDFW 910 (1230)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 910 (1230)
.++...+..+...+.+.+...+..+.++|+++|......++|.+....+...+.+..-..+...+++..+-.++...++.
T Consensus 183 t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg 262 (580)
T COG4618 183 TRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLG 262 (580)
T ss_pred hhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777777778888999999999999999999999999999999999988888888889999999999999999999
Q ss_pred HHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCcccccC
Q 000909 911 YGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISG 990 (1230)
Q Consensus 911 ~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 990 (1230)
.|++++.+|++|+|.+++....+.....|+...+..|..+..++.|..|+.++++..|...+ .-+.|..+|
T Consensus 263 ~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~---------~m~LP~P~g 333 (580)
T COG4618 263 LGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE---------RMPLPAPQG 333 (580)
T ss_pred cceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC---------CCCCCCCCc
Confidence 99999999999999999999888899999999999999999999999999999987665332 123344579
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1070 (1230)
.+.++++++.-|+. ++|+|+|+||+++|||-+|||||||||||||.++|.|.+.|.+|+|++||-|+++++.+++-++|
T Consensus 334 ~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hi 412 (580)
T COG4618 334 ALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHI 412 (580)
T ss_pred eeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcccc
Confidence 99999999977654 56899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccCCC
Q 000909 1071 ALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPT 1150 (1230)
Q Consensus 1071 ~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p~ 1150 (1230)
||.|||..||+|||+|||+-..++++++.|.+|++.++.||.|.+||+||||.+|++|..|||||||||+||||++.+|.
T Consensus 413 GYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~ 492 (580)
T COG4618 413 GYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPF 492 (580)
T ss_pred CcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCc
Confidence 99999999999999999985556889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCcEEEEecCHhHHhhc
Q 000909 1151 ILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1151 ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~ 1218 (1230)
+++||||-|+||.+-|+.+.++|.+.+ +|+|+|+||||.+.+..+|+|+||++|++..+|+-+|.+++
T Consensus 493 lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 493 LVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred EEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 999999999999999999999999875 59999999999999999999999999999999999999876
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-72 Score=682.47 Aligned_cols=466 Identities=21% Similarity=0.335 Sum_probs=358.9
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHh-hh
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVR-RE 432 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r-~~ 432 (1230)
-|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ ..
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 4999999999963 3599999999999999999999999999999999999999999999999999877766554 47
Q ss_pred eEEEccCccccch-hHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccC
Q 000909 433 MGLVSQEHALFGT-SIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKN 511 (1230)
Q Consensus 433 i~~v~Q~~~l~~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 511 (1230)
+||++|++.++.. |++||+.++.... .+.. ..+.+.++.+ |++........+||||||||++|||||+.+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~aL~~~ 158 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKR--QASM-----QKMKQLLAAL--GCQLDLDSSAGSLEVADRQIVEILRGLMRD 158 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccc--hHHH-----HHHHHHHHHc--CCCccccCChhhCCHHHHHHHHHHHHHHcC
Confidence 9999999988875 9999999874321 1111 1233445555 666666777889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhhcCcHHHHH
Q 000909 512 PVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRIDGHYAKM 589 (1230)
Q Consensus 512 ~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 589 (1230)
|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++... .....+
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~--~~~~~~ 236 (510)
T PRK15439 159 SRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTD--DIIQAI 236 (510)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHH--HHHHHH
Confidence 99999999999999999999999998763 58999999999999865 999999999999999988776431 000000
Q ss_pred HHHhhcccCCCCCCCcccccccccccCCCCccccCCCCcccCCCCCCCCCCCCCCCCchHHHHHHhhhhhhhHHHHHHHH
Q 000909 590 AKLQRQFSCDDQETIPETHVSSVTRSSGGRLSAARSSPAIFASPLPVIDSPQPVTYLPPSFFRLLSLNAPEWKQGLIGSL 669 (1230)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (1230)
. . .. . . .
T Consensus 237 -~---~-~~--~--~--~-------------------------------------------------------------- 243 (510)
T PRK15439 237 -T---P-AA--R--E--K-------------------------------------------------------------- 243 (510)
T ss_pred -h---C-cc--c--c--c--------------------------------------------------------------
Confidence 0 0 00 0 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 670 SAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNFAYMGGRLTKRIRLRMLEKIL 749 (1230)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l 749 (1230)
T Consensus 244 -------------------------------------------------------------------------------- 243 (510)
T PRK15439 244 -------------------------------------------------------------------------------- 243 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 750 TFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKV 829 (1230)
Q Consensus 750 ~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~ 829 (1230)
.. . ..
T Consensus 244 --~~---~--~~-------------------------------------------------------------------- 248 (510)
T PRK15439 244 --SL---S--AS-------------------------------------------------------------------- 248 (510)
T ss_pred --cc---c--cc--------------------------------------------------------------------
Confidence 00 0 00
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 830 LLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMSWALDF 909 (1230)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 909 (1230)
T Consensus 249 -------------------------------------------------------------------------------- 248 (510)
T PRK15439 249 -------------------------------------------------------------------------------- 248 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCccccc
Q 000909 910 WYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKIS 989 (1230)
Q Consensus 910 ~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 989 (1230)
.+. . ...+.. +.. .. ...
T Consensus 249 ------------------------------------------------~~~-~-~~~~~~-~~~-----~~------~~~ 266 (510)
T PRK15439 249 ------------------------------------------------QKL-W-LELPGN-RRQ-----QA------AGA 266 (510)
T ss_pred ------------------------------------------------ccc-c-cccccc-ccc-----cC------CCC
Confidence 000 0 000000 000 00 001
Q ss_pred CcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHH-Hhh
Q 000909 990 GKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW-YRK 1068 (1230)
Q Consensus 990 g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~-lR~ 1068 (1230)
.-|+++|++. .+|+|+||+|++||++||+||||||||||+++|.|+.+|++|+|.+||.++...+... +|+
T Consensus 267 ~~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 338 (510)
T PRK15439 267 PVLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLAR 338 (510)
T ss_pred ceEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence 1489999983 1699999999999999999999999999999999999999999999999998776654 466
Q ss_pred cceEEcccc---cCCc-ccHHHHhccC---C-CC-CCHHHHHHHHHHhchHHHHHhcccccc-ccccCCCCCCChhHHHH
Q 000909 1069 HTALVSQEP---VIYA-GNIRDNIVFG---K-LD-ASENEVVEAARAANAHEFISSLKDGYE-TECGERGVQLSGGQRQR 1138 (1230)
Q Consensus 1069 ~i~~VpQdp---~Lf~-gTIreNl~~g---~-~~-~sd~ei~~al~~a~l~~~i~~lp~gld-t~vge~G~~LSgGQrQr 1138 (1230)
+++||||++ .+|. .|+.+|+... . +. ....+.. ..+.++++.+ |++ .........||||||||
T Consensus 339 ~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqr 411 (510)
T PRK15439 339 GLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAREN-----AVLERYRRAL--NIKFNHAEQAARTLSGGNQQK 411 (510)
T ss_pred CcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHH-----HHHHHHHHHc--CCCCCCccCccccCCcHHHHH
Confidence 899999996 3665 4999998532 0 00 0111111 1123334443 333 23344556899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHh
Q 000909 1139 IAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLT 1216 (1230)
Q Consensus 1139 lalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl 1216 (1230)
++||||++.+|+||||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+++..|+++++.
T Consensus 412 l~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 412 VLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred HHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence 999999999999999999999999999999999999864 48999999999999975 7999999999999999998765
Q ss_pred hc
Q 000909 1217 HM 1218 (1230)
Q Consensus 1217 ~~ 1218 (1230)
.+
T Consensus 492 ~~ 493 (510)
T PRK15439 492 VD 493 (510)
T ss_pred HH
Confidence 33
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-72 Score=684.14 Aligned_cols=459 Identities=23% Similarity=0.353 Sum_probs=351.1
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC--CCceEEECCeecCCCCHHH-Hhh
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDA--DDGIVRIDGVDIRRLQLKW-VRR 431 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~i~~~g~~i~~~~~~~-~r~ 431 (1230)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+... .++
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 789999999963 3599999999999999999999999999999999999987 7999999999998776544 456
Q ss_pred heEEEccCccccch-hHHHHHhcCCCC------CCHHHHHHHHHHHhHHHHHHhCCCcccchh-cCCCCCCChhHHHHHH
Q 000909 432 EMGLVSQEHALFGT-SIKDNIMFGKLD------ATMDEVIAAATAANAHNFIRQLPEGYETKV-GERGALLSGGQKQRIA 503 (1230)
Q Consensus 432 ~i~~v~Q~~~l~~~-ti~~Ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~-~~~g~~LSgGqkqri~ 503 (1230)
.++||+|++.++.. |++||+.++... ...++.. ..+.+.++.+ |++... .....+||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMY-----LRAKNLLREL--QLDADNVTRPVGDYGGGQQQLVE 151 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHH-----HHHHHHHHHc--CCCCCcccCchhhCCHHHHHHHH
Confidence 89999999988865 999999986421 1112211 2234456665 554332 3456789999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhh
Q 000909 504 IARAIIKNPVILLLDEATSALDSESETLVQNALDQA-SLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 504 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~-~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 581 (1230)
|||||+.+|++|||||||++||+.+...+.+.|+++ .+|+|+|+|||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 231 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSED 231 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCCHH
Confidence 999999999999999999999999999999999876 358899999999999876 999999999999876532211000
Q ss_pred cCcHHHHHHHHhhcccCCCCCCCcccccccccccCCCCccccCCCCcccCCCCCCCCCCCCCCCCchHHHHHHhhhhhhh
Q 000909 582 IDGHYAKMAKLQRQFSCDDQETIPETHVSSVTRSSGGRLSAARSSPAIFASPLPVIDSPQPVTYLPPSFFRLLSLNAPEW 661 (1230)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1230)
..
T Consensus 232 ------~~------------------------------------------------------------------------ 233 (500)
T TIGR02633 232 ------DI------------------------------------------------------------------------ 233 (500)
T ss_pred ------HH------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 662 KQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNFAYMGGRLTKRIR 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 741 (1230)
...
T Consensus 234 ---------------------------~~~-------------------------------------------------- 236 (500)
T TIGR02633 234 ---------------------------ITM-------------------------------------------------- 236 (500)
T ss_pred ---------------------------HHH--------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 742 LRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTI 821 (1230)
Q Consensus 742 ~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~ 821 (1230)
. +. .
T Consensus 237 ------~-------~~--~------------------------------------------------------------- 240 (500)
T TIGR02633 237 ------M-------VG--R------------------------------------------------------------- 240 (500)
T ss_pred ------H-------hC--c-------------------------------------------------------------
Confidence 0 00 0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 822 LCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLT 901 (1230)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 901 (1230)
T Consensus 241 -------------------------------------------------------------------------------- 240 (500)
T TIGR02633 241 -------------------------------------------------------------------------------- 240 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCC
Q 000909 902 FMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTR 981 (1230)
Q Consensus 902 ~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~ 981 (1230)
.. .+..+.. ...
T Consensus 241 ------------------~~---------------------------------------------~~~~~~~-----~~~ 252 (500)
T TIGR02633 241 ------------------EI---------------------------------------------TSLYPHE-----PHE 252 (500)
T ss_pred ------------------cc---------------------------------------------ccccccc-----ccC
Confidence 00 0000000 000
Q ss_pred CCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-CCCeEEECCeecCC
Q 000909 982 GSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV-EQGSVRVDGMDVRE 1060 (1230)
Q Consensus 982 ~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-~~G~I~idG~di~~ 1060 (1230)
...--|+++|++++|+...+.++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 253 -----~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~ 327 (500)
T TIGR02633 253 -----IGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDI 327 (500)
T ss_pred -----CCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCC
Confidence 001148999999999422123599999999999999999999999999999999999995 89999999999875
Q ss_pred CCh-HHHhhcceEEcccc---cCCc-ccHHHHhccCCCC-------CCHHHHHHHHHHhchHHHHHhccccccc-cccCC
Q 000909 1061 LDV-HWYRKHTALVSQEP---VIYA-GNIRDNIVFGKLD-------ASENEVVEAARAANAHEFISSLKDGYET-ECGER 1127 (1230)
Q Consensus 1061 i~~-~~lR~~i~~VpQdp---~Lf~-gTIreNl~~g~~~-------~sd~ei~~al~~a~l~~~i~~lp~gldt-~vge~ 1127 (1230)
.+. ..+|++++||||++ .+|. .|+++|+.++... ...++. ...+.++++.+ |+.. .....
T Consensus 328 ~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~ 400 (500)
T TIGR02633 328 RNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAE-----LQIIGSAIQRL--KVKTASPFLP 400 (500)
T ss_pred CCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHH-----HHHHHHHHHhc--CccCCCccCc
Confidence 443 56788999999997 3665 5999999875210 011111 11122333333 2221 12334
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCcE
Q 000909 1128 GVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGR 1205 (1230)
Q Consensus 1128 G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~ 1205 (1230)
...||||||||++||||++++|++|||||||++||+.+.+.+.+.+++.. +|.|+|+|||+++.+.. ||+|++|++|+
T Consensus 401 ~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~ 480 (500)
T TIGR02633 401 IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGK 480 (500)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 56799999999999999999999999999999999999999999998864 48899999999999875 79999999999
Q ss_pred EEEecCHhH
Q 000909 1206 VVERGTYAQ 1214 (1230)
Q Consensus 1206 Ive~Gt~~e 1214 (1230)
++..++.++
T Consensus 481 i~~~~~~~~ 489 (500)
T TIGR02633 481 LKGDFVNHA 489 (500)
T ss_pred EEEEEcccc
Confidence 998876544
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-72 Score=685.01 Aligned_cols=456 Identities=23% Similarity=0.364 Sum_probs=351.9
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCH-HHHhhh
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQL-KWVRRE 432 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~-~~~r~~ 432 (1230)
-|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 359999999999999999999999999999999999999999999999999876543 456788
Q ss_pred eEEEccCccccch-hHHHHHhcCCCC-----CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHH
Q 000909 433 MGLVSQEHALFGT-SIKDNIMFGKLD-----ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIAR 506 (1230)
Q Consensus 433 i~~v~Q~~~l~~~-ti~~Ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 506 (1230)
|+||+|++.++.. |++||+.++... ....+.. ..+.+.++.+ |++........+||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLN-----YEAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHH-----HHHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHH
Confidence 9999999988875 999999986421 1112211 2234556666 6655566777899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhhcCc
Q 000909 507 AIIKNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRIDG 584 (1230)
Q Consensus 507 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 584 (1230)
||+.+|+++||||||++||+.+.+.+.+.|.++. +|+|+|+|||+++.+.. ||+|++|++|++++.++..+....
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~--- 230 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVDR--- 230 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccccCCH---
Confidence 9999999999999999999999999999998764 58999999999999866 999999999999864421100000
Q ss_pred HHHHHHHHhhcccCCCCCCCcccccccccccCCCCccccCCCCcccCCCCCCCCCCCCCCCCchHHHHHHhhhhhhhHHH
Q 000909 585 HYAKMAKLQRQFSCDDQETIPETHVSSVTRSSGGRLSAARSSPAIFASPLPVIDSPQPVTYLPPSFFRLLSLNAPEWKQG 664 (1230)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1230)
T Consensus 231 -------------------------------------------------------------------------------- 230 (501)
T PRK11288 231 -------------------------------------------------------------------------------- 230 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 665 LIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNFAYMGGRLTKRIRLRM 744 (1230)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 744 (1230)
.. +
T Consensus 231 ---------------------------------~~--------------------------------------------~ 233 (501)
T PRK11288 231 ---------------------------------DQ--------------------------------------------L 233 (501)
T ss_pred ---------------------------------HH--------------------------------------------H
Confidence 00 0
Q ss_pred HHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 745 LEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCF 824 (1230)
Q Consensus 745 ~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~ 824 (1230)
.+.+ .. ..
T Consensus 234 ~~~~-------~~--~~--------------------------------------------------------------- 241 (501)
T PRK11288 234 VQAM-------VG--RE--------------------------------------------------------------- 241 (501)
T ss_pred HHHh-------cC--CC---------------------------------------------------------------
Confidence 0000 00 00
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 825 YTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMS 904 (1230)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 904 (1230)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK11288 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCC
Q 000909 905 WALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRGSK 984 (1230)
Q Consensus 905 ~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~ 984 (1230)
. . ......+ ..
T Consensus 242 ----------------~------------------------------------~------~~~~~~~-------~~---- 252 (501)
T PRK11288 242 ----------------I------------------------------------G------DIYGYRP-------RP---- 252 (501)
T ss_pred ----------------c------------------------------------c------ccccccc-------cC----
Confidence 0 0 0000000 00
Q ss_pred cccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCCh-
Q 000909 985 LQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDV- 1063 (1230)
Q Consensus 985 ~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~- 1063 (1230)
.....++++|++++ .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.
T Consensus 253 --~~~~~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~ 323 (501)
T PRK11288 253 --LGEVRLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPR 323 (501)
T ss_pred --CCCcEEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHH
Confidence 00114889999842 38999999999999999999999999999999999999999999999999875543
Q ss_pred HHHhhcceEEccccc---CCc-ccHHHHhccCCCCC--------CHHHHHHHHHHhchHHHHHhcccccc-ccccCCCCC
Q 000909 1064 HWYRKHTALVSQEPV---IYA-GNIRDNIVFGKLDA--------SENEVVEAARAANAHEFISSLKDGYE-TECGERGVQ 1130 (1230)
Q Consensus 1064 ~~lR~~i~~VpQdp~---Lf~-gTIreNl~~g~~~~--------sd~ei~~al~~a~l~~~i~~lp~gld-t~vge~G~~ 1130 (1230)
+..|++++|+||+|. +|. .|+.||+.++.... ...+.. ..+.+++..+ |++ ........+
T Consensus 324 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~ 396 (501)
T PRK11288 324 DAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEA-----ENADRFIRSL--NIKTPSREQLIMN 396 (501)
T ss_pred HHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHH-----HHHHHHHHhc--CcccCCccCcccc
Confidence 456789999999973 554 79999998652110 111111 1122333333 231 122344568
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCcEEEE
Q 000909 1131 LSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGRVVE 1208 (1230)
Q Consensus 1131 LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive 1208 (1230)
||||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|++++
T Consensus 397 LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~ 476 (501)
T PRK11288 397 LSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAG 476 (501)
T ss_pred CCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998865 48899999999999865 79999999999999
Q ss_pred ecCHhHHh
Q 000909 1209 RGTYAQLT 1216 (1230)
Q Consensus 1209 ~Gt~~eLl 1216 (1230)
.|+++|..
T Consensus 477 ~~~~~~~~ 484 (501)
T PRK11288 477 ELAREQAT 484 (501)
T ss_pred EEccccCC
Confidence 99988754
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-70 Score=729.19 Aligned_cols=501 Identities=18% Similarity=0.254 Sum_probs=414.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHH
Q 000909 84 LAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASV 163 (1230)
Q Consensus 84 i~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~ 163 (1230)
++..++.+++.+++.+.+.+...++|.++++++++.|++||++ .++| +++||+++|++.+++.+...+..++..++.
T Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~-~~~G--~ilnRfs~Di~~id~~l~~~~~~~~~~~~~ 1012 (1490)
T TIGR01271 936 DSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNT-MKAG--RILNRFTKDMAIIDDMLPLTLFDFIQLTLI 1012 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CChh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566778888888999999999999999999999999996 5666 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHH
Q 000909 164 FISGLAFSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEA 243 (1230)
Q Consensus 164 ~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~ 243 (1230)
+++.++++++++|.+++++++++++++++..++.+..+...+......+...+.+.|+++|+.+||+|++++.+.+++.+
T Consensus 1013 ~i~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~ 1092 (1490)
T TIGR01271 1013 VLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHK 1092 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHH
Confidence 99999999999998766555554444555556666666667667777888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 244 ILDSTTKLGIKQGTAKGLAVGST-GLSF--AIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTE 320 (1230)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (1230)
..+...+..........+..... .+.. ...+.+++++. .....|.+..++.+...+..++..+...+..+..
T Consensus 1093 ~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~-----~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~ 1167 (1490)
T TIGR01271 1093 ALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGT-----NQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDG 1167 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88866554433322222222111 1111 11111122222 1234455555555566666677778888888999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCC--------------Cc--ccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCC
Q 000909 321 ASIAASRIFDRIDRVPEIDGEDTK--------------GL--VLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGK 384 (1230)
Q Consensus 321 ~~~s~~ri~~~l~~~~~~~~~~~~--------------~~--~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~ 384 (1230)
.+.+++|+.++++.+++.+..... .. ...+..|.|+|+||+|+|++. .+++|+|+||+|+|||
T Consensus 1168 ~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~Ge 1246 (1490)
T TIGR01271 1168 LMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQ 1246 (1490)
T ss_pred HHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCC
Confidence 999999999999765543211100 00 012345789999999999753 4679999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHH
Q 000909 385 SVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVI 464 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~ 464 (1230)
++||||+||||||||+++|+|+++ ++|+|++||+|+++++.+++|++|+||||||.||+||||+||.... +.++++++
T Consensus 1247 kvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-~~tdeei~ 1324 (1490)
T TIGR01271 1247 RVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-QWSDEEIW 1324 (1490)
T ss_pred EEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-CCCHHHHH
Confidence 999999999999999999999997 7999999999999999999999999999999999999999997543 56899999
Q ss_pred HHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCe
Q 000909 465 AAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRT 544 (1230)
Q Consensus 465 ~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t 544 (1230)
++++.+++++++.++|+|+||.+|++|.+||||||||+||||||+++|+|||||||||+||++|++.|++.|++..+++|
T Consensus 1325 ~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~T 1404 (1490)
T TIGR01271 1325 KVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCT 1404 (1490)
T ss_pred HHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred EEEEecCchhhhccCEEEEEeCCeEEEecChhHHHhhcCcHHHHHHHHhhcc
Q 000909 545 TLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQF 596 (1230)
Q Consensus 545 ~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~ 596 (1230)
+|+||||++++.+||+|+||++|+|+|.|+|++|+++ ++.|+++++.+...
T Consensus 1405 vI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~~~~ 1455 (1490)
T TIGR01271 1405 VILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE-TSLFKQAMSAADRL 1455 (1490)
T ss_pred EEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC-CcHHHHHHHHhChh
Confidence 9999999999999999999999999999999999984 89999998765543
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-68 Score=703.92 Aligned_cols=220 Identities=24% Similarity=0.389 Sum_probs=191.6
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhh
Q 000909 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRRE 432 (1230)
Q Consensus 353 ~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~ 432 (1230)
..|+++|+++.|+++ ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+|+.
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 469999999999632 3569999999999999999999999999999999999999999999999999965 45667889
Q ss_pred eEEEccCccccch-hHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhc
Q 000909 433 MGLVSQEHALFGT-SIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAII 509 (1230)
Q Consensus 433 i~~v~Q~~~l~~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 509 (1230)
+|||||++.+|+. |++|||.++.. ..+.++.. ..+.+.++.+ |++........+||||||||++|||||+
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~-----~~v~~lL~~v--gL~~~~~~~~~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQ-----LEMEAMLEDT--GLHHKRNEEAQDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999999999875 99999987421 11222221 2234556666 7777788888999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhh
Q 000909 510 KNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 510 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 581 (1230)
.+|+|+|||||||+||+.+++.+.+.|++..+|+|+|++||+++.+.. ||||++|++|++++.|++++|.++
T Consensus 1078 ~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999988779999999999999976 999999999999999999998754
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-71 Score=675.07 Aligned_cols=454 Identities=22% Similarity=0.329 Sum_probs=350.5
Q ss_pred EEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCH-HHHhhheEE
Q 000909 357 FEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQL-KWVRREMGL 435 (1230)
Q Consensus 357 ~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~-~~~r~~i~~ 435 (1230)
++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+++.++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 3689999963 459999999999999999999999999999999999999999999999999976654 445778999
Q ss_pred EccCccccc-hhHHHHHhcCCCCC-----CHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhc
Q 000909 436 VSQEHALFG-TSIKDNIMFGKLDA-----TMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAII 509 (1230)
Q Consensus 436 v~Q~~~l~~-~ti~~Ni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 509 (1230)
|+|++.++. .|++||+.++.... +.++.. ..+.+.++.+ |++........+||||||||++|||||+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMY-----RDTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHH-----HHHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 999998775 49999999764211 111111 2234556666 6766677788899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhhcCcHHH
Q 000909 510 KNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRIDGHYA 587 (1230)
Q Consensus 510 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 587 (1230)
.+|++|||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~------ 224 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMD------ 224 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCHH------
Confidence 9999999999999999999999999998863 58999999999999865 999999999999987765443110
Q ss_pred HHHHHhhcccCCCCCCCcccccccccccCCCCccccCCCCcccCCCCCCCCCCCCCCCCchHHHHHHhhhhhhhHHHHHH
Q 000909 588 KMAKLQRQFSCDDQETIPETHVSSVTRSSGGRLSAARSSPAIFASPLPVIDSPQPVTYLPPSFFRLLSLNAPEWKQGLIG 667 (1230)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (1230)
....
T Consensus 225 ~~~~---------------------------------------------------------------------------- 228 (491)
T PRK10982 225 KIIA---------------------------------------------------------------------------- 228 (491)
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 668 SLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNFAYMGGRLTKRIRLRMLEK 747 (1230)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 747 (1230)
.
T Consensus 229 -------------------------------------------------------------------------------~ 229 (491)
T PRK10982 229 -------------------------------------------------------------------------------M 229 (491)
T ss_pred -------------------------------------------------------------------------------H
Confidence 0
Q ss_pred HHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 748 ILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTR 827 (1230)
Q Consensus 748 ~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~ 827 (1230)
+ +. ..
T Consensus 230 ~-------~~--~~------------------------------------------------------------------ 234 (491)
T PRK10982 230 M-------VG--RS------------------------------------------------------------------ 234 (491)
T ss_pred H-------hC--CC------------------------------------------------------------------
Confidence 0 00 00
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 828 KVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMSWAL 907 (1230)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 907 (1230)
T Consensus 235 -------------------------------------------------------------------------------- 234 (491)
T PRK10982 235 -------------------------------------------------------------------------------- 234 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCccc
Q 000909 908 DFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQK 987 (1230)
Q Consensus 908 ~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~ 987 (1230)
. .+ ..+ . +. .. +
T Consensus 235 -------------~------------------------------------~~-----~~~-~-~~------~~------~ 246 (491)
T PRK10982 235 -------------L------------------------------------TQ-----RFP-D-KE------NK------P 246 (491)
T ss_pred -------------c------------------------------------cc-----ccc-c-cc------CC------C
Confidence 0 00 000 0 00 00 0
Q ss_pred ccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChH-HH
Q 000909 988 ISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVH-WY 1066 (1230)
Q Consensus 988 ~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~-~l 1066 (1230)
....|+++||+++|. ++|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.+||.++...+.. .+
T Consensus 247 ~~~~i~~~~l~~~~~-----~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 321 (491)
T PRK10982 247 GEVILEVRNLTSLRQ-----PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAI 321 (491)
T ss_pred CCcEEEEeCcccccC-----cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHH
Confidence 011489999999851 489999999999999999999999999999999999999999999999999877654 45
Q ss_pred hhcceEEccccc---CCc-ccHHHHhccC-----CC--C-CCHHHHHHHHHHhchHHHHHhcccccc-ccccCCCCCCCh
Q 000909 1067 RKHTALVSQEPV---IYA-GNIRDNIVFG-----KL--D-ASENEVVEAARAANAHEFISSLKDGYE-TECGERGVQLSG 1133 (1230)
Q Consensus 1067 R~~i~~VpQdp~---Lf~-gTIreNl~~g-----~~--~-~sd~ei~~al~~a~l~~~i~~lp~gld-t~vge~G~~LSg 1133 (1230)
|+.++|+||++. +|. .|+++|..+. .. . .+.++..+ ...++++.+ |+. ........+|||
T Consensus 322 ~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSg 394 (491)
T PRK10982 322 NHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----DTQWVIDSM--RVKTPGHRTQIGSLSG 394 (491)
T ss_pred HCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----HHHHHHHhc--CccCCCcccccccCCc
Confidence 778999999963 555 4777763221 11 1 11111111 122334443 221 123455668999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecC
Q 000909 1134 GQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGT 1211 (1230)
Q Consensus 1134 GQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt 1211 (1230)
|||||++||||++++|+||||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. |||+++|++|+++..++
T Consensus 395 Gq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~ 474 (491)
T PRK10982 395 GNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVD 474 (491)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999998864 58999999999999865 79999999999998887
Q ss_pred HhHHh
Q 000909 1212 YAQLT 1216 (1230)
Q Consensus 1212 ~~eLl 1216 (1230)
.+++.
T Consensus 475 ~~~~~ 479 (491)
T PRK10982 475 TKTTT 479 (491)
T ss_pred cccCC
Confidence 65443
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-70 Score=669.63 Aligned_cols=452 Identities=22% Similarity=0.290 Sum_probs=346.9
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheE
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 4 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 4 LQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred EEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 889999999963 34999999999999999999999999999999999999999999999998887777667778899
Q ss_pred EEccCccc--c-------chhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHH
Q 000909 435 LVSQEHAL--F-------GTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIA 505 (1230)
Q Consensus 435 ~v~Q~~~l--~-------~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 505 (1230)
|++|++.+ + ..|+++|+.++. ... ..+.+.++.+ |++........+||||||||++||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---------~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 147 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEV--KDP---------ARCEQLAQQF--GITALLDRRFKYLSTGETRKTLLC 147 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccch--hHH---------HHHHHHHHHc--CCHhhhhCCcccCCHHHHHHHHHH
Confidence 99998753 2 358888876531 001 1123445555 666666778889999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhhcC
Q 000909 506 RAIIKNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRID 583 (1230)
Q Consensus 506 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 583 (1230)
|||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+++..|+++++.+.
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-- 225 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ-- 225 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcc--
Confidence 99999999999999999999999999999998864 47899999999999876 999999999999998887765431
Q ss_pred cHHHHHHHHhhcccCCCCCCCcccccccccccCCCCccccCCCCcccCCCCCCCCCCCCCCCCchHHHHHHhhhhhhhHH
Q 000909 584 GHYAKMAKLQRQFSCDDQETIPETHVSSVTRSSGGRLSAARSSPAIFASPLPVIDSPQPVTYLPPSFFRLLSLNAPEWKQ 663 (1230)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (1230)
.....+...+
T Consensus 226 ~~~~~~~~~~---------------------------------------------------------------------- 235 (490)
T PRK10938 226 ALVAQLAHSE---------------------------------------------------------------------- 235 (490)
T ss_pred hhhhhhhhhh----------------------------------------------------------------------
Confidence 0000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 664 GLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNFAYMGGRLTKRIRLR 743 (1230)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 743 (1230)
T Consensus 236 -------------------------------------------------------------------------------- 235 (490)
T PRK10938 236 -------------------------------------------------------------------------------- 235 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 744 MLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILC 823 (1230)
Q Consensus 744 l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~ 823 (1230)
+ + .. ...+
T Consensus 236 ---~-----~--~~-~~~~------------------------------------------------------------- 243 (490)
T PRK10938 236 ---Q-----L--EG-VQLP------------------------------------------------------------- 243 (490)
T ss_pred ---c-----c--Cc-cccC-------------------------------------------------------------
Confidence 0 0 00 0000
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 824 FYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFM 903 (1230)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 903 (1230)
T Consensus 244 -------------------------------------------------------------------------------- 243 (490)
T PRK10938 244 -------------------------------------------------------------------------------- 243 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCC
Q 000909 904 SWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRGS 983 (1230)
Q Consensus 904 ~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~ 983 (1230)
+ .. ++..+. .. .
T Consensus 244 -------------------------------------------------------~----~~-~~~~~~------~~-~- 255 (490)
T PRK10938 244 -------------------------------------------------------E----PD-EPSARH------AL-P- 255 (490)
T ss_pred -------------------------------------------------------c----cc-cccccc------cc-C-
Confidence 0 00 000000 00 0
Q ss_pred CcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-CCCeEEECCeecCC-C
Q 000909 984 KLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV-EQGSVRVDGMDVRE-L 1061 (1230)
Q Consensus 984 ~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-~~G~I~idG~di~~-i 1061 (1230)
.....|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+.+| ++|+|.++|.++.. .
T Consensus 256 ---~~~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~ 329 (490)
T PRK10938 256 ---ANEPRIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGE 329 (490)
T ss_pred ---CCCceEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCC
Confidence 01124999999999963 3599999999999999999999999999999999998876 69999999987632 2
Q ss_pred ChHHHhhcceEEcccccCCc---ccHHHHhccCCC-------CCC---HHHHHHHHHHhchHHHHHhccccccccccCCC
Q 000909 1062 DVHWYRKHTALVSQEPVIYA---GNIRDNIVFGKL-------DAS---ENEVVEAARAANAHEFISSLKDGYETECGERG 1128 (1230)
Q Consensus 1062 ~~~~lR~~i~~VpQdp~Lf~---gTIreNl~~g~~-------~~s---d~ei~~al~~a~l~~~i~~lp~gldt~vge~G 1128 (1230)
+....|++++|+||++.++. .|+++++.++.. ... ++++.++++..++.+. ......
T Consensus 330 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~ 399 (490)
T PRK10938 330 TIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR----------TADAPF 399 (490)
T ss_pred CHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchh----------hccCch
Confidence 34457889999999987642 477777653210 111 1234455555544320 223345
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC-C-CeEEEEccCchhhhh--cCEEEEEeCc
Q 000909 1129 VQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM-G-RTTIVVAHRLNTIKK--LDSIALVADG 1204 (1230)
Q Consensus 1129 ~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~-~TvI~IaHrl~ti~~--~D~I~vl~~G 1204 (1230)
..||||||||++||||++++|++|||||||++||+++.+.+.+.|++..+ + .|+|+|||+++.+.. ||++++|++|
T Consensus 400 ~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G 479 (490)
T PRK10938 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDG 479 (490)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCC
Confidence 67999999999999999999999999999999999999999999998753 4 469999999999975 6999999999
Q ss_pred EEEEec
Q 000909 1205 RVVERG 1210 (1230)
Q Consensus 1205 ~Ive~G 1210 (1230)
+|++.-
T Consensus 480 ~i~~~~ 485 (490)
T PRK10938 480 DIYRYV 485 (490)
T ss_pred ceEEee
Confidence 998754
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-69 Score=661.78 Aligned_cols=487 Identities=19% Similarity=0.318 Sum_probs=349.1
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheE
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..|+
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999963 45999999999999999999999999999999999999999999999972 3699
Q ss_pred EEccCccccch-hHHHHHhcCCCCC----------------CHH------HHHH-------HHHHHhHHHHHHhCCCccc
Q 000909 435 LVSQEHALFGT-SIKDNIMFGKLDA----------------TMD------EVIA-------AATAANAHNFIRQLPEGYE 484 (1230)
Q Consensus 435 ~v~Q~~~l~~~-ti~~Ni~~~~~~~----------------~~~------~~~~-------~~~~~~~~~~i~~l~~g~~ 484 (1230)
|++|++.++.. |++||+.++.... ..+ +..+ ......+.+.++.+ |++
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 99999988765 9999998753100 000 0000 00112344556666 665
Q ss_pred chh-cCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEE
Q 000909 485 TKV-GERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIA 562 (1230)
Q Consensus 485 t~~-~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~ 562 (1230)
... .....+||||||||++|||||+.+|++|||||||++||+++...+.+.|.+ .++|+|+|||+++.+.. ||+|+
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~ 223 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMA 223 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEE
Confidence 433 356789999999999999999999999999999999999999999999975 47899999999999876 99999
Q ss_pred EEeCCeEE-EecChhHHHhhcCcHHHHHHHHhhcccCCCCCCCcccccccccccCCCCccccCCCCcccCCCCCCCCCCC
Q 000909 563 VVDNGCLV-EIGTHNDLINRIDGHYAKMAKLQRQFSCDDQETIPETHVSSVTRSSGGRLSAARSSPAIFASPLPVIDSPQ 641 (1230)
Q Consensus 563 ~l~~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (1230)
+|++|+++ ..|++++.++.....+....+...
T Consensus 224 ~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~----------------------------------------------- 256 (530)
T PRK15064 224 DLDYGELRVYPGNYDEYMTAATQARERLLADNA----------------------------------------------- 256 (530)
T ss_pred EEeCCEEEEecCCHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
Confidence 99999994 788888775420000000000000
Q ss_pred CCCCCchHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHH
Q 000909 642 PVTYLPPSFFRLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAF 721 (1230)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1230)
...
T Consensus 257 ---------------------------------------------------------~~~-------------------- 259 (530)
T PRK15064 257 ---------------------------------------------------------KKK-------------------- 259 (530)
T ss_pred ---------------------------------------------------------HHH--------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 722 NLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIM 801 (1230)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 801 (1230)
T Consensus 260 -------------------------------------------------------------------------------- 259 (530)
T PRK15064 260 -------------------------------------------------------------------------------- 259 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHH
Q 000909 802 GLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRK 881 (1230)
Q Consensus 802 ~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~ 881 (1230)
.+..+.. .. + .+..........
T Consensus 260 ----------------------------------~~~~~~~----~~----~----------------~~~~~~~~~~~~ 281 (530)
T PRK15064 260 ----------------------------------AQIAELQ----SF----V----------------SRFSANASKAKQ 281 (530)
T ss_pred ----------------------------------HHHHHHH----HH----H----------------HHhhccchhhHH
Confidence 0000000 00 0 000000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 882 QARKKSWLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVF 961 (1230)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~ 961 (1230)
+.....++.
T Consensus 282 -----------------------------------------------------------------------~~~~~~~~~ 290 (530)
T PRK15064 282 -----------------------------------------------------------------------ATSRAKQID 290 (530)
T ss_pred -----------------------------------------------------------------------HHHHHHHHh
Confidence 000000010
Q ss_pred HHHccCCCCCCCCCCCCCCCCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHh
Q 000909 962 KILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQ 1041 (1230)
Q Consensus 962 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~ 1041 (1230)
+. +..+..+..........+......+..|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+
T Consensus 291 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~ 366 (530)
T PRK15064 291 KI-KLEEVKPSSRQNPFIRFEQDKKLHRNALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLV 366 (530)
T ss_pred hc-cccccCCccccCceeeCCCCCCCCCceEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 00 000000000000000000000001235999999999963 35999999999999999999999999999999999
Q ss_pred ccccCCCCeEEECCeecCCCChHHHhhcceEEccccc--CCc-ccHHHHhccCC-CCCCHHHHHHHHHHhchH-HHHHhc
Q 000909 1042 RFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPV--IYA-GNIRDNIVFGK-LDASENEVVEAARAANAH-EFISSL 1116 (1230)
Q Consensus 1042 rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~--Lf~-gTIreNl~~g~-~~~sd~ei~~al~~a~l~-~~i~~l 1116 (1230)
|+++|++|+|.++| +++++|+||++. ++. .|+++|+.+.. +...++++.++++..++. +..
T Consensus 367 G~~~p~~G~i~~~~-----------~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--- 432 (530)
T PRK15064 367 GELEPDSGTVKWSE-----------NANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDI--- 432 (530)
T ss_pred CCCCCCCeEEEECC-----------ceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHh---
Confidence 99999999999998 257999999984 443 59999986422 222345566777776652 222
Q ss_pred cccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-c
Q 000909 1117 KDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-L 1195 (1230)
Q Consensus 1117 p~gldt~vge~G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~ 1195 (1230)
.....+||||||||++||||++++|+||||||||++||+.+...+.+.|++. +.|+|+|||+++.+.. |
T Consensus 433 --------~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~ 502 (530)
T PRK15064 433 --------KKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLA 502 (530)
T ss_pred --------cCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhC
Confidence 2345679999999999999999999999999999999999999999999886 5699999999999875 7
Q ss_pred CEEEEEeCcEEE-EecCHhHHhhccc
Q 000909 1196 DSIALVADGRVV-ERGTYAQLTHMRG 1220 (1230)
Q Consensus 1196 D~I~vl~~G~Iv-e~Gt~~eLl~~~g 1220 (1230)
|+|++|++|+++ ..|+++++++.+|
T Consensus 503 d~i~~l~~g~i~~~~g~~~~~~~~~~ 528 (530)
T PRK15064 503 TRIIEITPDGVVDFSGTYEEYLRSQG 528 (530)
T ss_pred CEEEEEECCeEEEcCCCHHHHHHHhC
Confidence 999999999998 7899999987765
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-68 Score=594.61 Aligned_cols=523 Identities=23% Similarity=0.325 Sum_probs=449.6
Q ss_pred HHHHHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 37 MSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAV 116 (1230)
Q Consensus 37 ~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l 116 (1230)
++....|+++-++-|.+.... + ...+....++.+++.++..++.+++.....+++.++...+...+|...
T Consensus 37 iL~L~~~lyMLQVyDRVL~S~------s----~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~ 106 (580)
T COG4618 37 LLALTGPLYMLQVYDRVLPSR------S----VPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAAS 106 (580)
T ss_pred HHHHhhhHHHHHHHhhhccCC------C----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 344444566667777765321 1 122333334445555666778889999999999999999999999999
Q ss_pred HcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000909 117 LRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLIIPGMIY 196 (1230)
Q Consensus 117 ~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~ 196 (1230)
.+.+..--. .| +=.+ .-+|.++++.|++..-+..+.+.-.+.+.+.++|.+++++.++.++...+++.+.++-
T Consensus 107 ~~~~l~~~~----~g--~~~Q-~LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln 179 (580)
T COG4618 107 FSAPLLRRG----SG--DGLQ-PLRDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLN 179 (580)
T ss_pred HhhHHhhcC----CC--cccc-chhhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877764322 22 2222 3359999999998765555555555666788889999999999888888877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 000909 197 GKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLGIKQGTAKGLAVGST-GLSFAIWAF 275 (1230)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 275 (1230)
.+..++-.++..+...+.+...+-..++..+|++.|......++|.+.+..+.....+.+-..+.+.... .+-.+....
T Consensus 180 ~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~ 259 (580)
T COG4618 180 ERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSA 259 (580)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888889999999999999999999999999999999999999999988887777777666666 666677778
Q ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcccCCccccE
Q 000909 276 LAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEI 355 (1230)
Q Consensus 276 ~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i 355 (1230)
++..|+++++.|++|.|.+++....+.....|+-.....+..+..++.|.+|+.+++...|+..+ ..+.+..++.+
T Consensus 260 iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~----~m~LP~P~g~L 335 (580)
T COG4618 260 VLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE----RMPLPAPQGAL 335 (580)
T ss_pred HHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC----CCCCCCCCcee
Confidence 88899999999999999999988888888889999999999999999999999999988765432 23445667899
Q ss_pred EEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheEE
Q 000909 356 EFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGL 435 (1230)
Q Consensus 356 ~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~~ 435 (1230)
.++++++.=|+. ++++++|+||++++||.+|||||||||||||.++|.|.++|.+|.|.+||-|+++.+.+.+-++|||
T Consensus 336 ~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGY 414 (580)
T COG4618 336 SVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGY 414 (580)
T ss_pred eEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCc
Confidence 999999976654 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCCCEE
Q 000909 436 VSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVIL 515 (1230)
Q Consensus 436 v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~il 515 (1230)
.|||..||+|||+|||+-..++.+.+++.+|++.++.||.|.++|+||||.+|+.|..|||||||||+||||+|.||.++
T Consensus 415 LPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lv 494 (580)
T COG4618 415 LPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLV 494 (580)
T ss_pred CcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEE
Confidence 99999999999999999555678889999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhccCEEEEEeCCeEEEecChhHHHhh
Q 000909 516 LLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 516 llDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 581 (1230)
+||||-|+||.+.|..+.++|...+ +|.|+|+||||++.+..+|+|++|++|++...|+.+|.+++
T Consensus 495 VLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 495 VLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred EecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 9999999999999999999998754 69999999999999999999999999999999999999875
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-68 Score=710.28 Aligned_cols=212 Identities=24% Similarity=0.414 Sum_probs=181.6
Q ss_pred cEEEEEEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc---CCCCeEEECCeecCCCChHHH
Q 000909 991 KIEMRRVDFAYPSRP-DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD---VEQGSVRVDGMDVRELDVHWY 1066 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~idG~di~~i~~~~l 1066 (1230)
.++++||+++|+.++ ++++|+|||++|+|||++||+||||||||||+++|.|+.+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 379999999996322 3469999999999999999999999999999999999998 78899999999985 257
Q ss_pred hhcceEEccccc-CCcccHHHHhccCC----C-CCCHHH----HHHHHHHhchHHHHHhccccccccccCCCCCCChhHH
Q 000909 1067 RKHTALVSQEPV-IYAGNIRDNIVFGK----L-DASENE----VVEAARAANAHEFISSLKDGYETECGERGVQLSGGQR 1136 (1230)
Q Consensus 1067 R~~i~~VpQdp~-Lf~gTIreNl~~g~----~-~~sd~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 1136 (1230)
|++++||||++. ++..||||||.++. | +.++++ +.++++..++.+ -.|+.+|+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHh
Confidence 899999999875 45679999998642 2 233333 445555555543 368899988889999999
Q ss_pred HHHHHHHHHccCCC-EEEeecccCCcCHHHHHHHHHHHHHh-cCCCeEEEEccCchhh--hhcCEEEEEeCc-EEEEecC
Q 000909 1137 QRIAIARAIIRNPT-ILLLDEATSALDVQSEQVVQEALDRI-MMGRTTIVVAHRLNTI--KKLDSIALVADG-RVVERGT 1211 (1230)
Q Consensus 1137 QrlalARAll~~p~-ILlLDEaTSaLD~~te~~I~~~l~~~-~~~~TvI~IaHrl~ti--~~~D~I~vl~~G-~Ive~Gt 1211 (1230)
||++|||||+++|+ ||+||||||+||+.+...|++.|++. .+|+|||+++|+++.. ..+|+|++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 99999999999999999999999987 4689999999999974 578999999997 9999999
Q ss_pred Hh
Q 000909 1212 YA 1213 (1230)
Q Consensus 1212 ~~ 1213 (1230)
+.
T Consensus 988 ~~ 989 (1394)
T TIGR00956 988 LG 989 (1394)
T ss_pred cc
Confidence 74
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-66 Score=636.93 Aligned_cols=476 Identities=18% Similarity=0.198 Sum_probs=380.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 717 ISLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVA 796 (1230)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~ 796 (1230)
+..++.++..++...++.++..++|.+++++++++|++||+ ++++|++++|+++|++.+...+. .+..++..++.++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~--~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i 136 (547)
T PRK10522 60 LLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIE--QLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTL 136 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHh--ccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHH
Confidence 33456678888999999999999999999999999999998 78899999999999999998665 4667778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchH---HHHHHHHH
Q 000909 797 IAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSA---GKVLQIFD 873 (1230)
Q Consensus 797 ~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~---~~~~~~~~ 873 (1230)
+++++++.++|.++++++++.|+.++..++..+.......+..+..++..+.+.|.+.|+++++ ++.+ +.+.++++
T Consensus 137 ~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~ 215 (547)
T PRK10522 137 GSAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYE 215 (547)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHh
Confidence 8888999999999999999988888777777666666677777788888999999999999995 4433 45677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 874 EAQEEPRKQARKKSWLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKG 953 (1230)
Q Consensus 874 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1230)
+..++..+...+..+.......+.........++.+++++.. ..+ +.+.+..+..+......++..+...+.++..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~ 292 (547)
T PRK10522 216 PDAQEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSL-GWA--DTNVAATYSLTLLFLRTPLLSAVGALPTLLSA 292 (547)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877777665555444444333333333323333333343332 112 33333333333444567889999999999999
Q ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCCCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCH
Q 000909 954 STAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGK 1033 (1230)
Q Consensus 954 ~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGK 1033 (1230)
..+.+|+.++.+.+++.+.. . ..+ .+..+.|+|+||+|+||+ ++++|+|+||+|+|||++||||||||||
T Consensus 293 ~~a~~ri~~l~~~~~~~~~~-----~--~~~-~~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGK 362 (547)
T PRK10522 293 QVAFNKLNKLALAPYKAEFP-----R--PQA-FPDWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGK 362 (547)
T ss_pred HHHHHHHHHHhccccccccc-----c--ccc-cCcCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCH
Confidence 99999999987643321110 0 001 111357999999999974 2469999999999999999999999999
Q ss_pred HHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHH
Q 000909 1034 STVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFI 1113 (1230)
Q Consensus 1034 STL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i 1113 (1230)
|||+++|+|+|+|++|+|.+||+|+++++.+++|++++||||||.+|++|+++| + ++.++++++++++.+++.+++
T Consensus 363 STL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~ 438 (547)
T PRK10522 363 STLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKL 438 (547)
T ss_pred HHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhh
Confidence 999999999999999999999999999999999999999999999999999999 2 467788888888888887766
Q ss_pred HhccccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchh
Q 000909 1114 SSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNT 1191 (1230)
Q Consensus 1114 ~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~t 1191 (1230)
. .|+|. .+|.+||||||||++||||++++|+|||||||||+||+++|+.+.+.+.+.. +++|+|+||||+++
T Consensus 439 ~-~~~~~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~ 512 (547)
T PRK10522 439 E-LEDGR-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHY 512 (547)
T ss_pred h-ccccC-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHH
Confidence 4 24442 1478999999999999999999999999999999999999999999987654 48999999999999
Q ss_pred hhhcCEEEEEeCcEEEEe-cCHhHHhhcc
Q 000909 1192 IKKLDSIALVADGRVVER-GTYAQLTHMR 1219 (1230)
Q Consensus 1192 i~~~D~I~vl~~G~Ive~-Gt~~eLl~~~ 1219 (1230)
+..||+|++|++|+++|. |++.+-..++
T Consensus 513 ~~~~d~i~~l~~G~i~e~~~~~~~~~~~~ 541 (547)
T PRK10522 513 FIHADRLLEMRNGQLSELTGEERDAASRD 541 (547)
T ss_pred HHhCCEEEEEECCEEEEecCCchhhhhhh
Confidence 999999999999999987 6666554443
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-67 Score=646.45 Aligned_cols=484 Identities=22% Similarity=0.305 Sum_probs=340.2
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhhe
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREM 433 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i 433 (1230)
-|+++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 5899999999962 24599999999999999999999999999999999999999999999975 2469
Q ss_pred EEEccCccccch-hHHHHHhcCCCC----------------CC----------HHHHHHHHH-------HHhHHHHHHhC
Q 000909 434 GLVSQEHALFGT-SIKDNIMFGKLD----------------AT----------MDEVIAAAT-------AANAHNFIRQL 479 (1230)
Q Consensus 434 ~~v~Q~~~l~~~-ti~~Ni~~~~~~----------------~~----------~~~~~~~~~-------~~~~~~~i~~l 479 (1230)
|||+|+|.+++. |++||+.++... .. ..++.+.+. ...+.+.++.+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999999875 999999875210 00 001111111 11233444554
Q ss_pred CCcccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-c
Q 000909 480 PEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-A 558 (1230)
Q Consensus 480 ~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~ 558 (1230)
|++ .......+||||||||++||||++.+|++||||||||+||+.+...+.+.|++.. .|+|+|||+++.+.. |
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVA 227 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhc
Confidence 553 2466778999999999999999999999999999999999999999999998763 599999999999976 9
Q ss_pred CEEEEEeCCeEE-EecChhHHHhhcCcHHHHHHHHhhcccCCCCCCCcccccccccccCCCCccccCCCCcccCCCCCCC
Q 000909 559 DLIAVVDNGCLV-EIGTHNDLINRIDGHYAKMAKLQRQFSCDDQETIPETHVSSVTRSSGGRLSAARSSPAIFASPLPVI 637 (1230)
Q Consensus 559 d~i~~l~~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1230)
|+|++|++|+++ ..|+++++.+............
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~--------------------------------------------- 262 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWLEQKAKRLAQEEKQ--------------------------------------------- 262 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHHHHHHHHHHHHHHH---------------------------------------------
Confidence 999999999986 6788777654200000000000
Q ss_pred CCCCCCCCCchHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHH
Q 000909 638 DSPQPVTYLPPSFFRLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLI 717 (1230)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1230)
....
T Consensus 263 -----------------------------------------------------------~~~~----------------- 266 (556)
T PRK11819 263 -----------------------------------------------------------EAAR----------------- 266 (556)
T ss_pred -----------------------------------------------------------HHHH-----------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 718 SLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAI 797 (1230)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~ 797 (1230)
+..+ .+. ..|.+ .
T Consensus 267 -----------------------~~~~-~~~----~~~~~--~------------------------------------- 279 (556)
T PRK11819 267 -----------------------QKAL-KRE----LEWVR--Q------------------------------------- 279 (556)
T ss_pred -----------------------HHHH-HHH----HHHHH--H-------------------------------------
Confidence 0000 000 00000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHH
Q 000909 798 AMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQE 877 (1230)
Q Consensus 798 ~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~ 877 (1230)
... + + . .
T Consensus 280 -----------------------------------------------~~~-------~----~-----------~-~--- 286 (556)
T PRK11819 280 -----------------------------------------------SPK-------A----R-----------Q-A--- 286 (556)
T ss_pred -----------------------------------------------hhh-------h----h-----------H-H---
Confidence 000 0 0 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 878 EPRKQARKKSWLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAV 957 (1230)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 957 (1230)
.. .......
T Consensus 287 ---~~--------------------------------------------------------------------~~~~~~~ 295 (556)
T PRK11819 287 ---KS--------------------------------------------------------------------KARLARY 295 (556)
T ss_pred ---HH--------------------------------------------------------------------HHHHHHH
Confidence 00 0000000
Q ss_pred HHHHHHHccCCCCCCCCCCCCCCCCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHH
Q 000909 958 ASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVI 1037 (1230)
Q Consensus 958 ~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~ 1037 (1230)
++..+ ..++..+.. .. -..+........-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+
T Consensus 296 ~~~~~--~~~~~~~~~-~~--~~~~~~~~~~~~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl 367 (556)
T PRK11819 296 EELLS--EEYQKRNET-NE--IFIPPGPRLGDKVIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLF 367 (556)
T ss_pred HHhhc--ccccccCCC-ce--eecCCCCCCCCeEEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHH
Confidence 00000 000000000 00 0000000011235999999999963 3599999999999999999999999999999
Q ss_pred HHHhccccCCCCeEEECCeecCCCChHHHhhcceEEcccc-cCCc-ccHHHHhccCCC--C--CCHHHHHHHHHHhchHH
Q 000909 1038 GLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEP-VIYA-GNIRDNIVFGKL--D--ASENEVVEAARAANAHE 1111 (1230)
Q Consensus 1038 ~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp-~Lf~-gTIreNl~~g~~--~--~sd~ei~~al~~a~l~~ 1111 (1230)
++|.|+++|++|+|.+++ ++ +++|+||++ .++. .|+++|+.++.. . ..+++..++++..++.+
T Consensus 368 ~~i~G~~~p~~G~i~~~~-~~----------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~ 436 (556)
T PRK11819 368 KMITGQEQPDSGTIKIGE-TV----------KLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKG 436 (556)
T ss_pred HHHhCCCCCCCeEEEECC-ce----------EEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCCh
Confidence 999999999999999964 21 599999997 5655 599999986532 1 11223333444443321
Q ss_pred HHHhccccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchh
Q 000909 1112 FISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNT 1191 (1230)
Q Consensus 1112 ~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~t 1191 (1230)
.........||||||||++||||++.+|++|||||||++||+.+...+.+.|++. + .|+|+|||+++.
T Consensus 437 ----------~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~ 504 (556)
T PRK11819 437 ----------GDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWF 504 (556)
T ss_pred ----------hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHH
Confidence 0123345679999999999999999999999999999999999999999999986 3 499999999998
Q ss_pred hhh-cCEEEEEeC-cEEEE-ecCHhHHhhc
Q 000909 1192 IKK-LDSIALVAD-GRVVE-RGTYAQLTHM 1218 (1230)
Q Consensus 1192 i~~-~D~I~vl~~-G~Ive-~Gt~~eLl~~ 1218 (1230)
+.. ||+|++|++ |++.+ .|+++++++.
T Consensus 505 ~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 505 LDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 875 799999996 88874 7889888765
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-65 Score=632.37 Aligned_cols=520 Identities=18% Similarity=0.195 Sum_probs=391.8
Q ss_pred HhcChhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 15 RFADRTDILLMVLGTVGAIGDGMSTNC-LLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGLAVMVVAFLE 93 (1230)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 93 (1230)
+|.+++++. ++++++++++..+.... .+++.+.++|.... .. ..+.. ++++.++..++.++.
T Consensus 6 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~--------~~----~~~~~----~~~~~~~~~~~~~~~ 68 (547)
T PRK10522 6 LVWRQYRWP-FISVMALSLASAALGIGLIAFINQRLIETADT--------SL----LVLPE----FLGLLLLLMAVTLGS 68 (547)
T ss_pred HHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------cc----hHHHH----HHHHHHHHHHHHHHH
Confidence 344454443 34455555555444433 24566778885421 00 11111 111222234566788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 000909 94 GYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTY 173 (1230)
Q Consensus 94 ~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~ 173 (1230)
.++..+.+.++..++|.+++++++++|+++|++ .++| ++++|+++|++.+..++. .++.++..++.+++.++++++
T Consensus 69 ~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~-~~~g--~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~ 144 (547)
T PRK10522 69 QLALTTLGHHFVYRLRSEFIKRILDTHVERIEQ-LGSA--SLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAW 144 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhc-cCcc--chHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999997 5667 999999999999998765 467788888889999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccH---HHHHHHHHHHHHHHHH
Q 000909 174 FSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAE---RRIIDRYEAILDSTTK 250 (1230)
Q Consensus 174 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e---~~~~~~~~~~~~~~~~ 250 (1230)
++|.+++++++++|+.+++..++.++.++..++.++..++.++.+.|.++|+++++ ++.+ +.+.+++++..++..+
T Consensus 145 ~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~ 223 (547)
T PRK10522 145 LSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRH 223 (547)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHh
Confidence 99999999999999988888888899898888999999999999999999999996 4443 4567888888777776
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 251 LGIKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTEASIAASRIF 329 (1230)
Q Consensus 251 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~ 329 (1230)
...+..........+. .+......+.+++++.. +..+.+.+..+..+......|+..+...+..++.+..+.+|+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~ 300 (547)
T PRK10522 224 HIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLN 300 (547)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655544443332222 11111222223333222 1122333333333344455788889999999999999999999
Q ss_pred HHhccCCCCCCCCCCCcccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 000909 330 DRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDA 409 (1230)
Q Consensus 330 ~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~ 409 (1230)
++++.+++.+... ... .+..+.|+++||+|+|++ ++++|+|+||+|+|||++||+||||||||||+++|+|+|+|
T Consensus 301 ~l~~~~~~~~~~~--~~~-~~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~ 375 (547)
T PRK10522 301 KLALAPYKAEFPR--PQA-FPDWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP 375 (547)
T ss_pred HHhcccccccccc--ccc-cCcCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 9875433211111 111 111357999999999974 24699999999999999999999999999999999999999
Q ss_pred CCceEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcC
Q 000909 410 DDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGE 489 (1230)
Q Consensus 410 ~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~ 489 (1230)
++|+|.+||+++++++.+++|++|+||+|||++|++|+++| + ++.+++++.++++..++ +.++..++
T Consensus 376 ~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l---------~~~~~~~~ 442 (547)
T PRK10522 376 QSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKM---------AHKLELED 442 (547)
T ss_pred CCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCC---------chhhhccc
Confidence 99999999999999999999999999999999999999999 3 33445555444444433 33333333
Q ss_pred ---CCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhccCEEEEE
Q 000909 490 ---RGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRNADLIAVV 564 (1230)
Q Consensus 490 ---~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~~l 564 (1230)
+|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+.+.. +++|+|+||||+++++.||+|++|
T Consensus 443 ~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l 522 (547)
T PRK10522 443 GRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEM 522 (547)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEE
Confidence 378999999999999999999999999999999999999999999987543 489999999999999999999999
Q ss_pred eCCeEEEe-cChhH
Q 000909 565 DNGCLVEI-GTHND 577 (1230)
Q Consensus 565 ~~G~i~~~-g~~~~ 577 (1230)
++|+++|. |++.+
T Consensus 523 ~~G~i~e~~~~~~~ 536 (547)
T PRK10522 523 RNGQLSELTGEERD 536 (547)
T ss_pred ECCEEEEecCCchh
Confidence 99999986 44433
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-67 Score=642.77 Aligned_cols=484 Identities=23% Similarity=0.322 Sum_probs=338.0
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhhe
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREM 433 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i 433 (1230)
-|+++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 4899999999962 24599999999999999999999999999999999999999999999975 2479
Q ss_pred EEEccCccccch-hHHHHHhcCCCC-----------------CCH---------HHHHHHHHHH-------hHHHHHHhC
Q 000909 434 GLVSQEHALFGT-SIKDNIMFGKLD-----------------ATM---------DEVIAAATAA-------NAHNFIRQL 479 (1230)
Q Consensus 434 ~~v~Q~~~l~~~-ti~~Ni~~~~~~-----------------~~~---------~~~~~~~~~~-------~~~~~i~~l 479 (1230)
|||+|+|.+++. |++||+.++... ... .++.++++.. .+.+.++.+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 999999998865 999999875310 000 1122222221 123344444
Q ss_pred CCcccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-c
Q 000909 480 PEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-A 558 (1230)
Q Consensus 480 ~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~ 558 (1230)
|++. ......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. ++|+|+|||+++.+.. |
T Consensus 151 --~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 4432 45677899999999999999999999999999999999999999999999876 3699999999999976 9
Q ss_pred CEEEEEeCCeEE-EecChhHHHhhcCcHHHHHHHHhhcccCCCCCCCcccccccccccCCCCccccCCCCcccCCCCCCC
Q 000909 559 DLIAVVDNGCLV-EIGTHNDLINRIDGHYAKMAKLQRQFSCDDQETIPETHVSSVTRSSGGRLSAARSSPAIFASPLPVI 637 (1230)
Q Consensus 559 d~i~~l~~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1230)
|+|++|++|+++ ..|+++++.+........ +...
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~~~~~~~~~~----~~~~----------------------------------------- 260 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWLEQKEKRLEQ----EEKE----------------------------------------- 260 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHHHHHHHHHHH----HHHH-----------------------------------------
Confidence 999999999976 678887765420000000 0000
Q ss_pred CCCCCCCCCchHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHH
Q 000909 638 DSPQPVTYLPPSFFRLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLI 717 (1230)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1230)
...
T Consensus 261 -----------------------------------------------------------~~~------------------ 263 (552)
T TIGR03719 261 -----------------------------------------------------------ESA------------------ 263 (552)
T ss_pred -----------------------------------------------------------HHH------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 718 SLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAI 797 (1230)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~ 797 (1230)
....+ .|.
T Consensus 264 ----------------------~~~~~-----------------------~~~--------------------------- 271 (552)
T TIGR03719 264 ----------------------RQKAL-----------------------KRE--------------------------- 271 (552)
T ss_pred ----------------------HHHHH-----------------------HHH---------------------------
Confidence 00000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHH
Q 000909 798 AMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQE 877 (1230)
Q Consensus 798 ~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~ 877 (1230)
..|. ... .. .. +... ....
T Consensus 272 -------~~~~------------------~~~--~~-~~---~~~~----------------------~~~~-------- 290 (552)
T TIGR03719 272 -------LEWV------------------RSS--PK-AR---QAKS----------------------KARL-------- 290 (552)
T ss_pred -------HHHH------------------Hhh--hh-hH---HHHH----------------------HHHH--------
Confidence 0000 000 00 00 0000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 878 EPRKQARKKSWLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAV 957 (1230)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 957 (1230)
...
T Consensus 291 -----------------------------------------------------------------------------~~~ 293 (552)
T TIGR03719 291 -----------------------------------------------------------------------------ARY 293 (552)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 000
Q ss_pred HHHHHHHccCCCCCCCCCCCCCCCCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHH
Q 000909 958 ASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVI 1037 (1230)
Q Consensus 958 ~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~ 1037 (1230)
++..+ ...+..+..... .. .......+.-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+
T Consensus 294 ~~~~~--~~~~~~~~~~~~--~~-~~~~~~~~~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl 365 (552)
T TIGR03719 294 EELLS--QEFQKRNETAEI--YI-PPGPRLGDKVIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLF 365 (552)
T ss_pred Hhhhh--hcccccCCCcee--ec-CCCCCCCCeEEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHH
Confidence 00000 000000000000 00 0000001225999999999963 3599999999999999999999999999999
Q ss_pred HHHhccccCCCCeEEECCeecCCCChHHHhhcceEEccccc-CCc-ccHHHHhccCCC--CCC--HHHHHHHHHHhchHH
Q 000909 1038 GLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPV-IYA-GNIRDNIVFGKL--DAS--ENEVVEAARAANAHE 1111 (1230)
Q Consensus 1038 ~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~-Lf~-gTIreNl~~g~~--~~s--d~ei~~al~~a~l~~ 1111 (1230)
++|.|+.+|++|+|.+++ ++ +|+|+||++. ++. .|+++|+.++.. ... +.+..++++..++.+
T Consensus 366 ~~l~G~~~p~~G~i~~~~-~~----------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~ 434 (552)
T TIGR03719 366 RMITGQEQPDSGTIKIGE-TV----------KLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKG 434 (552)
T ss_pred HHHcCCCCCCCeEEEECC-ce----------EEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCCh
Confidence 999999999999999965 21 6999999973 554 599999987532 111 222333333333311
Q ss_pred HHHhccccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchh
Q 000909 1112 FISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNT 1191 (1230)
Q Consensus 1112 ~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~t 1191 (1230)
. ........||||||||++||||++.+|++|||||||++||+.+...+.+.|++. +.|+|+|||+++.
T Consensus 435 ~----------~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~~viivsHd~~~ 502 (552)
T TIGR03719 435 S----------DQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF--AGCAVVISHDRWF 502 (552)
T ss_pred h----------HhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC--CCeEEEEeCCHHH
Confidence 0 123345679999999999999999999999999999999999999999999986 3499999999999
Q ss_pred hhh-cCEEEEEeC-cEEE-EecCHhHHhhc
Q 000909 1192 IKK-LDSIALVAD-GRVV-ERGTYAQLTHM 1218 (1230)
Q Consensus 1192 i~~-~D~I~vl~~-G~Iv-e~Gt~~eLl~~ 1218 (1230)
+.. ||+|++|++ |+++ ..|+++++++.
T Consensus 503 ~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~ 532 (552)
T TIGR03719 503 LDRIATHILAFEGDSHVEWFEGNYSEYEED 532 (552)
T ss_pred HHHhCCEEEEEECCCeEEEeCCCHHHHHHH
Confidence 875 799999997 6887 45888777643
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-65 Score=635.43 Aligned_cols=484 Identities=21% Similarity=0.325 Sum_probs=332.1
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheE
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
|+++|++++|++ +.+|+|+||+|++|+++|||||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 789999999963 459999999999999999999999999999999999999999999998842 478
Q ss_pred EEccCccccchhHHHHHhcCCCCC--------------CHHHH---HHH-------HHHHhHHHHHHhCCCccc-chhcC
Q 000909 435 LVSQEHALFGTSIKDNIMFGKLDA--------------TMDEV---IAA-------ATAANAHNFIRQLPEGYE-TKVGE 489 (1230)
Q Consensus 435 ~v~Q~~~l~~~ti~~Ni~~~~~~~--------------~~~~~---~~~-------~~~~~~~~~i~~l~~g~~-t~~~~ 489 (1230)
|++|++..+..|+.+++.-+.... ....+ ... .....+.+.+..+ |+. .....
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~ 145 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLER 145 (638)
T ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcC
Confidence 888875444445555543210000 00000 000 0012334456666 664 34567
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCe
Q 000909 490 RGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGC 568 (1230)
Q Consensus 490 ~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~ 568 (1230)
...+||||||||++|||||+.+|++|||||||++||+.+..++.+.|.+. +.|+|+|||++..+.. ||+|++|++|+
T Consensus 146 ~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~ 223 (638)
T PRK10636 146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQS 223 (638)
T ss_pred chhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCE
Confidence 77899999999999999999999999999999999999999999999875 5699999999999976 99999999999
Q ss_pred EEE-ecChhHHHhhcCcHHHHHHHHhhcccCCCCCCCcccccccccccCCCCccccCCCCcccCCCCCCCCCCCCCCCCc
Q 000909 569 LVE-IGTHNDLINRIDGHYAKMAKLQRQFSCDDQETIPETHVSSVTRSSGGRLSAARSSPAIFASPLPVIDSPQPVTYLP 647 (1230)
Q Consensus 569 i~~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (1230)
++. .|++++.... ... .. ..+...
T Consensus 224 i~~~~g~~~~~~~~-~~~--~~-~~~~~~--------------------------------------------------- 248 (638)
T PRK10636 224 LFEYTGNYSSFEVQ-RAT--RL-AQQQAM--------------------------------------------------- 248 (638)
T ss_pred EEEecCCHHHHHHH-HHH--HH-HHHHHH---------------------------------------------------
Confidence 974 5665554331 000 00 000000
Q ss_pred hHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 648 PSFFRLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHY 727 (1230)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1230)
. ...
T Consensus 249 ---------------------------------------------~----~~~--------------------------- 252 (638)
T PRK10636 249 ---------------------------------------------Y----ESQ--------------------------- 252 (638)
T ss_pred ---------------------------------------------H----HHH---------------------------
Confidence 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 728 NFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAW 807 (1230)
Q Consensus 728 ~~~~~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 807 (1230)
T Consensus 253 -------------------------------------------------------------------------------- 252 (638)
T PRK10636 253 -------------------------------------------------------------------------------- 252 (638)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 808 KLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKS 887 (1230)
Q Consensus 808 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 887 (1230)
..+..+ +..+.+++..........
T Consensus 253 ---------------------------~~~~~~------------------------~~~~i~r~~~~a~~~~~a----- 276 (638)
T PRK10636 253 ---------------------------QERVAH------------------------LQSYIDRFRAKATKAKQA----- 276 (638)
T ss_pred ---------------------------HHHHHH------------------------HHHHHHHhhhhhhhHHHH-----
Confidence 000000 000000000000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 000909 888 WLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQ 967 (1230)
Q Consensus 888 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~ 967 (1230)
......++++... + +
T Consensus 277 ---------------------------------------------------------------~~r~~~l~~~~~~-~-~ 291 (638)
T PRK10636 277 ---------------------------------------------------------------QSRIKMLERMELI-A-P 291 (638)
T ss_pred ---------------------------------------------------------------HHHHHHHHHhhcc-c-c
Confidence 0000001111100 0 0
Q ss_pred CCCCCCCCCCCCCCCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCC
Q 000909 968 SLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVE 1047 (1230)
Q Consensus 968 ~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~ 1047 (1230)
+..+.. .+-..+.+......-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|+
T Consensus 292 ~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~ 365 (638)
T PRK10636 292 AHVDNP---FHFSFRAPESLPNPLLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV 365 (638)
T ss_pred cccCCc---eeEecCCCccCCCceEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 000000 000000000001225999999999963 45999999999999999999999999999999999999999
Q ss_pred CCeEEECCeecCCCChHHHhhcceEEcccc--cCCc-ccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccc
Q 000909 1048 QGSVRVDGMDVRELDVHWYRKHTALVSQEP--VIYA-GNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETEC 1124 (1230)
Q Consensus 1048 ~G~I~idG~di~~i~~~~lR~~i~~VpQdp--~Lf~-gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~v 1124 (1230)
+|+|.+++. .+++|+||++ .+.. .|+.+++....+...++++.+.++..++.. ..+
T Consensus 366 ~G~i~~~~~-----------~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~----------~~~ 424 (638)
T PRK10636 366 SGEIGLAKG-----------IKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQG----------DKV 424 (638)
T ss_pred CCeEEECCC-----------EEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCCh----------hHh
Confidence 999999741 2699999985 3443 478888742122223445555555555421 012
Q ss_pred cCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeC
Q 000909 1125 GERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVAD 1203 (1230)
Q Consensus 1125 ge~G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~ 1203 (1230)
......||||||||++||||++++|++|||||||++||+.+...+.+.|++. +.|||+|||+++.+.. ||+|++|++
T Consensus 425 ~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~ 502 (638)
T PRK10636 425 TEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHD 502 (638)
T ss_pred cCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEEC
Confidence 2334579999999999999999999999999999999999999999999986 4599999999999975 799999999
Q ss_pred cEEE-EecCHhHHhh
Q 000909 1204 GRVV-ERGTYAQLTH 1217 (1230)
Q Consensus 1204 G~Iv-e~Gt~~eLl~ 1217 (1230)
|+++ ..|++++..+
T Consensus 503 G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 503 GKVEPFDGDLEDYQQ 517 (638)
T ss_pred CEEEEcCCCHHHHHH
Confidence 9998 6799988743
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-64 Score=664.12 Aligned_cols=214 Identities=22% Similarity=0.417 Sum_probs=178.4
Q ss_pred CcEEEEEEEEECCCC----------CCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC--CCCeEEECCee
Q 000909 990 GKIEMRRVDFAYPSR----------PDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV--EQGSVRVDGMD 1057 (1230)
Q Consensus 990 g~I~f~~Vsf~Y~~~----------~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p--~~G~I~idG~d 1057 (1230)
..+.|+||++..+.. ....+|+|||++++|||.+||+||||||||||+++|.|..++ .+|+|.+||.+
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 369999999998532 123699999999999999999999999999999999999774 68999999988
Q ss_pred cCCCChHHHhhcceEEcccccCCc-ccHHHHhccCC----C-CCCHH----HHHHHHHHhchHHHHHhccccccccccCC
Q 000909 1058 VRELDVHWYRKHTALVSQEPVIYA-GNIRDNIVFGK----L-DASEN----EVVEAARAANAHEFISSLKDGYETECGER 1127 (1230)
Q Consensus 1058 i~~i~~~~lR~~i~~VpQdp~Lf~-gTIreNl~~g~----~-~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~ 1127 (1230)
.+ ...+|+.++||+|++.++. .||+|||.++. | +.+.+ .+.+.++..++.+. .|+.+|..
T Consensus 946 ~~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~ 1015 (1470)
T PLN03140 946 KK---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLP 1015 (1470)
T ss_pred CC---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCC
Confidence 64 3457788999999988776 59999998642 2 22333 24566666666543 46677654
Q ss_pred C-CCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchh--hhhcCEEEEEeC
Q 000909 1128 G-VQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNT--IKKLDSIALVAD 1203 (1230)
Q Consensus 1128 G-~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~t--i~~~D~I~vl~~ 1203 (1230)
+ ..||||||||++|||||+.+|+||+||||||+||+.+...+.+.|++.. +|+|||+++|+++. ...+|++++|++
T Consensus 1016 ~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~ 1095 (1470)
T PLN03140 1016 GVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1095 (1470)
T ss_pred CCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcC
Confidence 4 5799999999999999999999999999999999999999999999875 48999999999984 467899999996
Q ss_pred -cEEEEecCHh
Q 000909 1204 -GRVVERGTYA 1213 (1230)
Q Consensus 1204 -G~Ive~Gt~~ 1213 (1230)
|+++..|++.
T Consensus 1096 gG~~v~~G~~~ 1106 (1470)
T PLN03140 1096 GGQVIYSGPLG 1106 (1470)
T ss_pred CCEEEEECCcc
Confidence 8999999864
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-63 Score=619.86 Aligned_cols=530 Identities=13% Similarity=0.099 Sum_probs=433.3
Q ss_pred hHHHHHHhcChhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHHHHHHHHHHHHHH
Q 000909 9 NIGIIFRFADRTDI----LLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGL 84 (1230)
Q Consensus 9 ~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~p~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 84 (1230)
.++++++|++|+++ ..+++.+++.++...+....|++.+.++|.+... +...+...+..+.++++++.+
T Consensus 78 ~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~-------~~~~f~~~l~~~~l~~~~~~~ 150 (659)
T TIGR00954 78 KLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRR-------SPRNFAWILFKWFLIAPPASF 150 (659)
T ss_pred HHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc-------CHHHHHHHHHHHHHHHHHHHH
Confidence 36667888877654 2455666666666777777888999999986532 111122223334444555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHH
Q 000909 85 AVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVF 164 (1230)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~ 164 (1230)
+..+..++..++......++..++|.+++++....++.+||+ ++| ++.+|+++|++.+.+.+...+..++..++.+
T Consensus 151 ~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~--~~g--~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~i 226 (659)
T TIGR00954 151 INSAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS--RIQ--NPDQLLTQDVEKFCDSVVELYSNLTKPILDV 226 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC--CCC--CccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777788888888899999999999999998999999984 456 9999999999999999999999999999999
Q ss_pred HHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHH
Q 000909 165 ISGLAFSTY-FSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEA 243 (1230)
Q Consensus 165 i~~~~~~~~-~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~ 243 (1230)
+++++.++. ++|.+++++++.+|+..++..++.+++.+..++.++..++..+...|.++|+++||+|+.|+.+.+++++
T Consensus 227 i~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~ 306 (659)
T TIGR00954 227 ILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMS 306 (659)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHH
Confidence 988887776 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHH-h----cCccHHHHHH-HHHH---HHHHHHHHHHH
Q 000909 244 ILDSTTKLGIKQGTAKGLAVGST-GLSFA--IWAFLAWYGSHLVM-F----KGETGGKIYA-AGIS---FILSGLSLGSA 311 (1230)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~g~~~~~-~----~~~~~g~~~~-~~~~---~~~~~~~l~~~ 311 (1230)
..++..+...+..+..+...++. ++... ..+..++.|...+. . |.+|.|.+++ ++.+ +.....|+..+
T Consensus 307 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l 386 (659)
T TIGR00954 307 SFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRL 386 (659)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888887766665 33221 22222333332332 2 6788888766 4443 44557789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCC-------CC--CC-------------cccCCccccEEEEEEEEECCCCCC
Q 000909 312 LPELKYFTEASIAASRIFDRIDRVPEIDGE-------DT--KG-------------LVLDEVRGEIEFEHVKFSYPSRPD 369 (1230)
Q Consensus 312 ~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~-------~~--~~-------------~~~~~~~~~i~~~~v~~~y~~~~~ 369 (1230)
...+..++++.++.+|++++++.+++.+.. .. +. .......+.|+++||+|+|++ +
T Consensus 387 ~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~ 464 (659)
T TIGR00954 387 MLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--G 464 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--C
Confidence 999999999999999999999754322100 00 00 001112356999999999974 2
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheEEEccCccccchhHHH
Q 000909 370 SIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKD 449 (1230)
Q Consensus 370 ~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 449 (1230)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ |++++||+|+|++|++|++|
T Consensus 465 ~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~e 533 (659)
T TIGR00954 465 DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRD 533 (659)
T ss_pred CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHH
Confidence 3699999999999999999999999999999999999999999999874 56899999999999999999
Q ss_pred HHhcCC-------CCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCC
Q 000909 450 NIMFGK-------LDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATS 522 (1230)
Q Consensus 450 Ni~~~~-------~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts 522 (1230)
||.++. ++.+++++.++++.+++++++++ |.|+||..+ .+.+||||||||++||||++++|+++|||||||
T Consensus 534 ni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts 611 (659)
T TIGR00954 534 QIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTS 611 (659)
T ss_pred HHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 999874 23457788899999999998887 999999876 567999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEeC
Q 000909 523 ALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDN 566 (1230)
Q Consensus 523 ~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~ 566 (1230)
+||+++++.+.+.+++. |+|+|+||||++.++.||+|++|+.
T Consensus 612 ~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 612 AVSVDVEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred CCCHHHHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 99999999999999774 8999999999999999999999973
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-64 Score=624.46 Aligned_cols=201 Identities=25% Similarity=0.459 Sum_probs=164.3
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1070 (1230)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+ |.++ +|
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 4899999999963 35999999999999999999999999999999999999999999999 4332 59
Q ss_pred eEEcccc-cCCc-ccHHHHhccCCCCC--C--HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHH
Q 000909 1071 ALVSQEP-VIYA-GNIRDNIVFGKLDA--S--ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARA 1144 (1230)
Q Consensus 1071 ~~VpQdp-~Lf~-gTIreNl~~g~~~~--s--d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARA 1144 (1230)
+|++|++ .++. .|+.+|+.++.+.. . +.++.+.++..++.. +..+ .....||||||||++||||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~----~~~~~LSgGekqRl~la~a 454 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHP------KRAM----TPVKALSGGERNRLLLARL 454 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCH------HHHh----ChhhhCCHHHHHHHHHHHH
Confidence 9999986 4655 49999998653221 1 223334444333311 1122 3345799999999999999
Q ss_pred HccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEe-CcEEEEe-cCHhHHhh
Q 000909 1145 IIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVA-DGRVVER-GTYAQLTH 1217 (1230)
Q Consensus 1145 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~-~G~Ive~-Gt~~eLl~ 1217 (1230)
++.+|++|||||||++||+.+...+.+.+++. ++|+|+|||+++.+.. ||+|++|+ +|+|.++ |++++.++
T Consensus 455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 99999999999999999999999999999875 5699999999999865 79999998 8999874 78887654
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-64 Score=625.26 Aligned_cols=200 Identities=25% Similarity=0.403 Sum_probs=165.8
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1070 (1230)
-|+++||+++|++ ..++|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.+++ +.++
T Consensus 508 ~L~~~~ls~~y~~--~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 508 IISFSDASFGYPG--GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred eEEEEeeEEEeCC--CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 5999999999963 23599999999999999999999999999999999999999999999976 3479
Q ss_pred eEEcccccCCcccHHHHhc--c--CCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHc
Q 000909 1071 ALVSQEPVIYAGNIRDNIV--F--GKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAII 1146 (1230)
Q Consensus 1071 ~~VpQdp~Lf~gTIreNl~--~--g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll 1146 (1230)
+|+||++. ...++.+|.. + ..+..+++++.++++..++.+.. .......||||||||++||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~----------~~~~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHH----------hcCCccccCHHHHHHHHHHHHHh
Confidence 99999973 2335555532 1 12344567777777777774321 12345689999999999999999
Q ss_pred cCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCcEEE-EecCHhHHh
Q 000909 1147 RNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRVV-ERGTYAQLT 1216 (1230)
Q Consensus 1147 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Iv-e~Gt~~eLl 1216 (1230)
++|++|||||||++||+.+...+.+.+.+. +.|+|+|||+++.+.. ||+|++|++|+++ ..|++++..
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 999999999999999999999999998875 3599999999999975 7999999999998 578887753
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-62 Score=609.82 Aligned_cols=535 Identities=16% Similarity=0.160 Sum_probs=438.4
Q ss_pred HHHHHHhhhhhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHH
Q 000909 649 SFFRLLSLNAPEWK-----QGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNL 723 (1230)
Q Consensus 649 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1230)
.+++++++.+|+|+ .+++.+++.++...+....+++.+.+++.....+..........|.++++++.++..+..+
T Consensus 78 ~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~ 157 (659)
T TIGR00954 78 KLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKY 157 (659)
T ss_pred HHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777776 4556666666667777778888888887766433222222234455556666677777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 724 LQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGL 803 (1230)
Q Consensus 724 ~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~ 803 (1230)
+..++......++..++|++.+++....++.|||+ ++|++.+|+++|++.+...+...+..++..++.++++++.++
T Consensus 158 ~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~---~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~ 234 (659)
T TIGR00954 158 LLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS---RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLL 234 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC---CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999988899999983 679999999999999999999999999999999988888777
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHH
Q 000909 804 V-VAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQ 882 (1230)
Q Consensus 804 ~-~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~ 882 (1230)
. ++|.+++++++..|+..++..+..+.+.....+.++..++..+...|.+.|+++|++|+.++.+.+++++..++..+.
T Consensus 235 ~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~ 314 (659)
T TIGR00954 235 TALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEH 314 (659)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 5 999999999999999999999999888888899999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHh-c----CCcCHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHH
Q 000909 883 ARKKSWLAGIGMGSAQCLTFMS-WAL-DFWYGGTLVQ-K----GQISAGDVFKT-FF---ILVSTGKVIAEAGSMTSDLA 951 (1230)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~g~~lv~-~----g~~~~g~~~~~-~~---~~~~~~~~~~~~~~~~~~~~ 951 (1230)
..+...+......+..++.... ..+ .++.|...+. . |.+|.|.++.. .. ++..+..++..+.....++.
T Consensus 315 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~ 394 (659)
T TIGR00954 315 LNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMT 394 (659)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877777777765432 222 2333342332 2 78898876553 32 24556788888999999999
Q ss_pred HHHHHHHHHHHHHccCCCCCCCC----CCCC--CC----C-------CCCcccccCcEEEEEEEEECCCCCCccccccee
Q 000909 952 KGSTAVASVFKILDRQSLIPGSS----QAGD--GT----R-------GSKLQKISGKIEMRRVDFAYPSRPDALVLRQFS 1014 (1230)
Q Consensus 952 ~~~~s~~ri~~~~~~~~~~~~~~----~~~~--~~----~-------~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vs 1014 (1230)
++..+.+|+.++++.+++..... ...+ +. . ........+.|+++||+|+||+ ++++|+|+|
T Consensus 395 ~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~is 472 (659)
T TIGR00954 395 RLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLS 472 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecce
Confidence 99999999999997644321100 0000 00 0 0001113467999999999973 236999999
Q ss_pred EEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcceEEcccccCCcccHHHHhccCC--
Q 000909 1015 MEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGK-- 1092 (1230)
Q Consensus 1015 l~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~-- 1092 (1230)
|+|++||++||+||||||||||+++|+|+++|++|+|.+|+ |++++||||+|.+|++|++|||.++.
T Consensus 473 l~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~ 541 (659)
T TIGR00954 473 FEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSS 541 (659)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCCh
Confidence 99999999999999999999999999999999999999874 67899999999999999999999874
Q ss_pred -----CCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHH
Q 000909 1093 -----LDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQ 1167 (1230)
Q Consensus 1093 -----~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~ 1167 (1230)
++.++++++++++.+++++++++ |.|+||..+ .+.+||||||||++||||++++|++||||||||+||+++++
T Consensus 542 ~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~ 619 (659)
T TIGR00954 542 EDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEG 619 (659)
T ss_pred hhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 34678899999999999999987 999999976 56799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeC
Q 000909 1168 VVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVAD 1203 (1230)
Q Consensus 1168 ~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~ 1203 (1230)
.+++.+++. |+|+|+||||++++..||+|++|+.
T Consensus 620 ~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 620 YMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 999999874 8999999999999999999999973
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-63 Score=569.47 Aligned_cols=455 Identities=24% Similarity=0.356 Sum_probs=355.7
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCH-HHHhhh
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQL-KWVRRE 432 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~-~~~r~~ 432 (1230)
-++++|++++|+. .++|+||||++++||++|++|+||||||||+|+|+|.|+|++|+|.+||+...-.++ +.....
T Consensus 8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 4889999999974 469999999999999999999999999999999999999999999999999987665 456678
Q ss_pred eEEEccCccccch-hHHHHHhcCCCCCC------HHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHH
Q 000909 433 MGLVSQEHALFGT-SIKDNIMFGKLDAT------MDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIA 505 (1230)
Q Consensus 433 i~~v~Q~~~l~~~-ti~~Ni~~~~~~~~------~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 505 (1230)
|+.|+||..|++. ||.|||.+|++... +.+..+. +.+.+..+ |.+........+||+||||.|+||
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~-----A~~~l~~l--g~~~~~~~~v~~LsiaqrQ~VeIA 157 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRR-----ARELLARL--GLDIDPDTLVGDLSIAQRQMVEIA 157 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHH-----HHHHHHHc--CCCCChhhhhhhCCHHHHHHHHHH
Confidence 9999999999976 99999999976432 2333332 23445555 432225556678999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecCh-hHHHhhc
Q 000909 506 RAIIKNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTH-NDLINRI 582 (1230)
Q Consensus 506 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~-~~l~~~~ 582 (1230)
||+..+++|+|||||||+|+....+.+++.++++. +|.++|+||||++++.. ||||.||.||+.+..++. .++-..
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~~- 236 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSED- 236 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCHH-
Confidence 99999999999999999999998899999998875 79999999999999976 999999999999875431 111000
Q ss_pred CcHHHHHHHHhhcccCCCCCCCcccccccccccCCCCccccCCCCcccCCCCCCCCCCCCCCCCchHHHHHHhhhhhhhH
Q 000909 583 DGHYAKMAKLQRQFSCDDQETIPETHVSSVTRSSGGRLSAARSSPAIFASPLPVIDSPQPVTYLPPSFFRLLSLNAPEWK 662 (1230)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (1230)
T Consensus 237 -------------------------------------------------------------------------------- 236 (500)
T COG1129 237 -------------------------------------------------------------------------------- 236 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 663 QGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNFAYMGGRLTKRIRL 742 (1230)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 742 (1230)
.++...
T Consensus 237 ------------------------~lv~~M-------------------------------------------------- 242 (500)
T COG1129 237 ------------------------ELVRLM-------------------------------------------------- 242 (500)
T ss_pred ------------------------HHHHHh--------------------------------------------------
Confidence 000000
Q ss_pred HHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 743 RMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTIL 822 (1230)
Q Consensus 743 ~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~ 822 (1230)
.|+
T Consensus 243 --------------------vGr--------------------------------------------------------- 245 (500)
T COG1129 243 --------------------VGR--------------------------------------------------------- 245 (500)
T ss_pred --------------------hCc---------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 823 CFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTF 902 (1230)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 902 (1230)
T Consensus 246 -------------------------------------------------------------------------------- 245 (500)
T COG1129 246 -------------------------------------------------------------------------------- 245 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCC
Q 000909 903 MSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRG 982 (1230)
Q Consensus 903 ~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~ 982 (1230)
++-+..+. +.. .
T Consensus 246 -----------------------------------------------------------~~~~~~~~-~~~-----~--- 257 (500)
T COG1129 246 -----------------------------------------------------------ELEDLFPE-PPE-----E--- 257 (500)
T ss_pred -----------------------------------------------------------chhhhccc-ccc-----c---
Confidence 00000000 000 0
Q ss_pred CCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCC
Q 000909 983 SKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELD 1062 (1230)
Q Consensus 983 ~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~ 1062 (1230)
......++++|++..- .++|+||++++||.+||.|-=|||+|-++.+|+|..++.+|+|.+||.++.--+
T Consensus 258 ---~~~~~~l~v~~l~~~~-------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~s 327 (500)
T COG1129 258 ---GIGEPVLEVRNLSGGG-------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRS 327 (500)
T ss_pred ---CCCCcEEEEecCCCCC-------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCC
Confidence 0001136777776531 589999999999999999999999999999999999999999999999887766
Q ss_pred h-HHHhhcceEEcccc----cCCcccHHHHhccCCC-CCCHH-HHHHHHHHhchHHHHHhccccccccccCCCCCCChhH
Q 000909 1063 V-HWYRKHTALVSQEP----VIYAGNIRDNIVFGKL-DASEN-EVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQ 1135 (1230)
Q Consensus 1063 ~-~~lR~~i~~VpQdp----~Lf~gTIreNl~~g~~-~~sd~-ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 1135 (1230)
+ +..+..|+|||-|- .+...+|++|+.+... ..+.. -+..+.++....+++.+|.-.-.. ....-.+||||.
T Consensus 328 p~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s-~~~~v~~LSGGN 406 (500)
T COG1129 328 PRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS-PEQPIGTLSGGN 406 (500)
T ss_pred HHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCC-ccchhhcCCchh
Confidence 5 57888999999775 3556799999987621 11111 244555666667777776322111 113345799999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCcEEEEe
Q 000909 1136 RQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIK-KLDSIALVADGRVVER 1209 (1230)
Q Consensus 1136 rQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~ 1209 (1230)
+|+++|||+|..+|+||||||||.++|..+.+.|.+.|+++. +|++||+||-.+..+. .||||+||.+|+|+..
T Consensus 407 QQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e 482 (500)
T COG1129 407 QQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGE 482 (500)
T ss_pred hhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999975 5899999999999986 7899999999999974
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-63 Score=609.20 Aligned_cols=436 Identities=23% Similarity=0.307 Sum_probs=321.5
Q ss_pred EEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEE-----------ECCeecCCCCHH
Q 000909 359 HVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVR-----------IDGVDIRRLQLK 427 (1230)
Q Consensus 359 ~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~-----------~~g~~i~~~~~~ 427 (1230)
+++++|+. +..+|++++ .+++||++||+||||||||||+++|+|+++|++|+|. ++|.++.++..+
T Consensus 78 ~~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 78 EPVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred CceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 48899963 235899999 9999999999999999999999999999999999997 899988654321
Q ss_pred H--HhhheE----EEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHH
Q 000909 428 W--VRREMG----LVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQR 501 (1230)
Q Consensus 428 ~--~r~~i~----~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 501 (1230)
. .+.+++ |++|.|.+|.+|++||+.... ..+ .+.+.++.+ |++........+||||||||
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~---~~~---------~~~~~l~~l--~l~~~~~~~~~~LSgGe~qr 220 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD---ERG---------KLDEVVERL--GLENILDRDISELSGGELQR 220 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhhh---HHH---------HHHHHHHHc--CCchhhcCChhhCCHHHHHH
Confidence 1 112344 555567778889999997421 011 223445555 66666777888999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 502 IAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 502 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
++||||++++|++||||||||+||+.+...+.+.|+++.+|+|+|+|||+++.+.. ||+|++|++|. |.+
T Consensus 221 v~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~~----g~~----- 291 (590)
T PRK13409 221 VAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGEP----GAY----- 291 (590)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCc----ccc-----
Confidence 99999999999999999999999999999999999987558999999999999976 99999997631 100
Q ss_pred hcCcHHHHHHHHhhcccCCCCCCCcccccccccccCCCCccccCCCCcccCCCCCCCCCCCCCCCCchHHHHHHhhhhhh
Q 000909 581 RIDGHYAKMAKLQRQFSCDDQETIPETHVSSVTRSSGGRLSAARSSPAIFASPLPVIDSPQPVTYLPPSFFRLLSLNAPE 660 (1230)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (1230)
+.+.. . . . .
T Consensus 292 ---g~~~~---------------~--~-----------------~------------------------~---------- 300 (590)
T PRK13409 292 ---GVVSK---------------P--K-----------------G------------------------V---------- 300 (590)
T ss_pred ---ceecc---------------h--h-----------------H------------------------H----------
Confidence 00000 0 0 0 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 661 WKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNFAYMGGRLTKRI 740 (1230)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 740 (1230)
......|. ..
T Consensus 301 ----------------------------------------~~~i~~~~----------------~~-------------- 310 (590)
T PRK13409 301 ----------------------------------------RVGINEYL----------------KG-------------- 310 (590)
T ss_pred ----------------------------------------HHhHHHHH----------------Hh--------------
Confidence 00000000 00
Q ss_pred HHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 741 RLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLT 820 (1230)
Q Consensus 741 ~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~ 820 (1230)
|.
T Consensus 311 ---------------~~--------------------------------------------------------------- 312 (590)
T PRK13409 311 ---------------YL--------------------------------------------------------------- 312 (590)
T ss_pred ---------------cc---------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 821 ILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCL 900 (1230)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 900 (1230)
. . |. +
T Consensus 313 -----------~---~--------------e~------~----------------------------------------- 317 (590)
T PRK13409 313 -----------P---E--------------EN------M----------------------------------------- 317 (590)
T ss_pred -----------h---h--------------hh------h-----------------------------------------
Confidence 0 0 00 0
Q ss_pred HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCC
Q 000909 901 TFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGT 980 (1230)
Q Consensus 901 ~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~ 980 (1230)
|+ .+.+...+..+. ...
T Consensus 318 ----------------------------------------------------------~~---~~~~~~~~~~~~--~~~ 334 (590)
T PRK13409 318 ----------------------------------------------------------RI---RPEPIEFEERPP--RDE 334 (590)
T ss_pred ----------------------------------------------------------hc---cccCcceecCCC--ccc
Confidence 00 000000000000 000
Q ss_pred CCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCC
Q 000909 981 RGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRE 1060 (1230)
Q Consensus 981 ~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~ 1060 (1230)
. ....-++++|++++|++ ..|+++||+|++||++||+|+||||||||+++|.|+.+|++|+|.++ +
T Consensus 335 --~---~~~~~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~-- 400 (590)
T PRK13409 335 --S---ERETLVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---L-- 400 (590)
T ss_pred --c---CCceEEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---e--
Confidence 0 00124899999999953 25999999999999999999999999999999999999999999986 1
Q ss_pred CChHHHhhcceEEcccccC-CcccHHHHhccCCCCCC-HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHH
Q 000909 1061 LDVHWYRKHTALVSQEPVI-YAGNIRDNIVFGKLDAS-ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQR 1138 (1230)
Q Consensus 1061 i~~~~lR~~i~~VpQdp~L-f~gTIreNl~~g~~~~s-d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 1138 (1230)
+++|+||++.+ ++.|+++|+.++..... +..+.++++..++.+.. ......||||||||
T Consensus 401 --------~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~-----------~~~~~~LSGGe~QR 461 (590)
T PRK13409 401 --------KISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLL-----------DKNVKDLSGGELQR 461 (590)
T ss_pred --------eEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHH-----------hCCcccCCHHHHHH
Confidence 59999999875 56799999986532222 33445666666665432 23345799999999
Q ss_pred HHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCcEEEEecC
Q 000909 1139 IAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKK-LDSIALVADGRVVERGT 1211 (1230)
Q Consensus 1139 lalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt 1211 (1230)
++|||||+++|+||||||||++||+++...+.+.|+++.+ ++|+|+|||+++.+.. ||||++|++ ++...|+
T Consensus 462 vaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 462 VAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 9999999999999999999999999999999999998743 7899999999999875 799999964 8877665
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-61 Score=573.16 Aligned_cols=490 Identities=25% Similarity=0.348 Sum_probs=346.5
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhhe
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREM 433 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i 433 (1230)
.|+++|++++|+ ++++|+|+||++.+|+++||||+||||||||+|+|+|...|++|+|..++. -++
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 488999999996 346999999999999999999999999999999999999999999998762 269
Q ss_pred EEEccCccccch-hHHHHHhcCCCCCC--HHHHHHHHH-------------------------HHhHHHHHHhCCCcccc
Q 000909 434 GLVSQEHALFGT-SIKDNIMFGKLDAT--MDEVIAAAT-------------------------AANAHNFIRQLPEGYET 485 (1230)
Q Consensus 434 ~~v~Q~~~l~~~-ti~~Ni~~~~~~~~--~~~~~~~~~-------------------------~~~~~~~i~~l~~g~~t 485 (1230)
+|++|++.+.+. ||.+.+.-+..... ..+...+.. .+.+...+..+ |+..
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~ 146 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPD 146 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCc
Confidence 999999999865 99999987643210 001111100 12233334444 4444
Q ss_pred hhcCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEE
Q 000909 486 KVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVV 564 (1230)
Q Consensus 486 ~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l 564 (1230)
. .....+||||||-|++|||||+.+|++|||||||++||.++..++.+.|.+.. | |+|+||||.+++.. |++|+.+
T Consensus 147 ~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~-g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 147 E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP-G-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC-C-cEEEEeCCHHHHHHHhhheEEe
Confidence 4 55667899999999999999999999999999999999999999999998654 5 99999999999988 9999999
Q ss_pred eCCeEEE-ecChhHHHhhcCcHHHHHHHHhhcccCCCCCCCcccccccccccCCCCccccCCCCcccCCCCCCCCCCCCC
Q 000909 565 DNGCLVE-IGTHNDLINRIDGHYAKMAKLQRQFSCDDQETIPETHVSSVTRSSGGRLSAARSSPAIFASPLPVIDSPQPV 643 (1230)
Q Consensus 565 ~~G~i~~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (1230)
++|++.. .|+++..++. .......+.
T Consensus 224 d~g~l~~y~Gny~~~~~~-----------r~~~~~~~~------------------------------------------ 250 (530)
T COG0488 224 DRGKLTPYKGNYSSYLEQ-----------KAERLRQEA------------------------------------------ 250 (530)
T ss_pred cCCceeEecCCHHHHHHH-----------HHHHHHHHH------------------------------------------
Confidence 9998754 3444444332 110000000
Q ss_pred CCCchHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHH
Q 000909 644 TYLPPSFFRLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNL 723 (1230)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1230)
....+.
T Consensus 251 -----------~~~~~~--------------------------------------------------------------- 256 (530)
T COG0488 251 -----------AAYEKQ--------------------------------------------------------------- 256 (530)
T ss_pred -----------HHHHHH---------------------------------------------------------------
Confidence 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 724 LQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGL 803 (1230)
Q Consensus 724 ~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~ 803 (1230)
.+..+
T Consensus 257 ------------------~~~~~--------------------------------------------------------- 261 (530)
T COG0488 257 ------------------QKELA--------------------------------------------------------- 261 (530)
T ss_pred ------------------HHHHH---------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHH
Q 000909 804 VVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQA 883 (1230)
Q Consensus 804 ~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~ 883 (1230)
.+..+.+++........++
T Consensus 262 ------------------------------------------------------------~~~~~i~r~~~~~~~~k~a- 280 (530)
T COG0488 262 ------------------------------------------------------------KEQEWIRRGKAAASKAKKA- 280 (530)
T ss_pred ------------------------------------------------------------HHHHHHHHHHhccchHHHH-
Confidence 0000000000000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 884 RKKSWLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKI 963 (1230)
Q Consensus 884 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~ 963 (1230)
......++++.+-
T Consensus 281 -------------------------------------------------------------------~sr~k~l~k~~~~ 293 (530)
T COG0488 281 -------------------------------------------------------------------KSRIKRLEKLEAR 293 (530)
T ss_pred -------------------------------------------------------------------HHHHHHHHHHHhh
Confidence 0000111111110
Q ss_pred -HccCCCCCCCCCCCCCCCCCCc-ccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHh
Q 000909 964 -LDRQSLIPGSSQAGDGTRGSKL-QKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQ 1041 (1230)
Q Consensus 964 -~~~~~~~~~~~~~~~~~~~~~~-~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~ 1041 (1230)
....+.....+.. -...++. ...+--++++|++++|++. +++++++||.|.+|++||||||||+|||||+++|.
T Consensus 294 ~~~~~~~~~~~~~~--~~f~~~~~~~g~~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~ 369 (530)
T COG0488 294 LAEERPVEEGKPLA--FRFPPPGKRLGKLVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLA 369 (530)
T ss_pred hhhcccccccccce--eeccCCcccCCCeeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHh
Confidence 0000000000000 0000000 0112358999999999643 56999999999999999999999999999999999
Q ss_pred ccccCCCCeEEECCeecCCCChHHHhhcceEEcccc-cCC-cccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhcccc
Q 000909 1042 RFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEP-VIY-AGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDG 1119 (1230)
Q Consensus 1042 rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp-~Lf-~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~g 1119 (1230)
|-..|.+|+|.+.-. -++||.+|+. .++ +.|+-|++.-..|+..+.++...|...+...--
T Consensus 370 g~~~~~~G~v~~g~~-----------v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~------ 432 (530)
T COG0488 370 GELGPLSGTVKVGET-----------VKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGED------ 432 (530)
T ss_pred hhcccCCceEEeCCc-----------eEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHH------
Confidence 999999999999731 2589999998 444 348999997555555577788887777664321
Q ss_pred ccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEE
Q 000909 1120 YETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSI 1198 (1230)
Q Consensus 1120 ldt~vge~G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I 1198 (1230)
..++ ...||||||-|+.||+.++.+|++|||||||.+||.+|...+.++|.++ ..|||+|||+.+.+.. |++|
T Consensus 433 ~~~~----v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i 506 (530)
T COG0488 433 QEKP----VGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRI 506 (530)
T ss_pred HhCc----hhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceE
Confidence 2233 3469999999999999999999999999999999999999999999886 6699999999999986 5999
Q ss_pred EEEeCcEEEEe-cCHhHHhhccc
Q 000909 1199 ALVADGRVVER-GTYAQLTHMRG 1220 (1230)
Q Consensus 1199 ~vl~~G~Ive~-Gt~~eLl~~~g 1220 (1230)
+++++ ++.++ |++++..+..+
T Consensus 507 ~~~~~-~~~~~~g~y~~y~~~~~ 528 (530)
T COG0488 507 WLVED-KVEEFEGGYEDYLEQKK 528 (530)
T ss_pred EEEcC-ceeEcCCCHHHHHHhhc
Confidence 99999 88887 89998877643
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-60 Score=533.22 Aligned_cols=461 Identities=25% Similarity=0.412 Sum_probs=361.3
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCC-HHHHhhh
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQ-LKWVRRE 432 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~-~~~~r~~ 432 (1230)
.++++++++.|| ...+++||||++++||+.||+|+||+|||||+++|.|+|+|++|+|++||++++--+ .+..|..
T Consensus 4 ~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 589999999998 346899999999999999999999999999999999999999999999999998554 5678889
Q ss_pred eEEEccCccccch-hHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccC
Q 000909 433 MGLVSQEHALFGT-SIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKN 511 (1230)
Q Consensus 433 i~~v~Q~~~l~~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 511 (1230)
||+|.|++.|++. |+.|||.+|.+......+........+.+..+++ |++-...+....||-||||||.|-+|||++
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlKaLyr~ 158 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERY--GLPVDPDAKVADLSVGEQQRVEILKALYRG 158 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHh--CCCCCccceeecCCcchhHHHHHHHHHhcC
Confidence 9999999999976 9999999997642111111122223344555555 777777888889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhhcCcHHHHH
Q 000909 512 PVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRIDGHYAKM 589 (1230)
Q Consensus 512 ~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 589 (1230)
|++||||||||-|-|...+.+++.++.+. .|+|||+|||++.++.. |||+-||.+|+++..-++ . +
T Consensus 159 a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~--~-~--------- 226 (501)
T COG3845 159 ARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDP--V-A--------- 226 (501)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeecC--C-C---------
Confidence 99999999999999999999999998864 69999999999999987 999999999998753211 0 0
Q ss_pred HHHhhcccCCCCCCCcccccccccccCCCCccccCCCCcccCCCCCCCCCCCCCCCCchHHHHHHhhhhhhhHHHHHHHH
Q 000909 590 AKLQRQFSCDDQETIPETHVSSVTRSSGGRLSAARSSPAIFASPLPVIDSPQPVTYLPPSFFRLLSLNAPEWKQGLIGSL 669 (1230)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (1230)
+... . ...++
T Consensus 227 ------------~~t~-~-----------------------------------------ela~l---------------- 236 (501)
T COG3845 227 ------------ETTE-E-----------------------------------------ELAEL---------------- 236 (501)
T ss_pred ------------CCCH-H-----------------------------------------HHHHH----------------
Confidence 0000 0 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 670 SAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYNFAYMGGRLTKRIRLRMLEKIL 749 (1230)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l 749 (1230)
T Consensus 237 -------------------------------------------------------------------------------- 236 (501)
T COG3845 237 -------------------------------------------------------------------------------- 236 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 750 TFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKV 829 (1230)
Q Consensus 750 ~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~ 829 (1230)
T Consensus 237 -------------------------------------------------------------------------------- 236 (501)
T COG3845 237 -------------------------------------------------------------------------------- 236 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 830 LLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMSWALDF 909 (1230)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 909 (1230)
T Consensus 237 -------------------------------------------------------------------------------- 236 (501)
T COG3845 237 -------------------------------------------------------------------------------- 236 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCcccc
Q 000909 910 WYGGTLVQKG-QISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKI 988 (1230)
Q Consensus 910 ~~g~~lv~~g-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 988 (1230)
+-| .+. . ..+. .+..+-
T Consensus 237 -------MvG~~v~-------------------------------------------~--~~~~----------~~~~pg 254 (501)
T COG3845 237 -------MVGREVV-------------------------------------------L--RVVK----------PPSTPG 254 (501)
T ss_pred -------hcCCccc-------------------------------------------c--cccc----------CCCCCC
Confidence 000 000 0 0000 000011
Q ss_pred cCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeec-CCCChHHHh
Q 000909 989 SGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDV-RELDVHWYR 1067 (1230)
Q Consensus 989 ~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di-~~i~~~~lR 1067 (1230)
.--++++|++..=+ + +.+.+++|||+|++||.+||.|-.|-|-+.|+.+|.|+..|.+|+|.++|.|+ ...+....|
T Consensus 255 ~~vL~V~~L~v~~~-~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r 332 (501)
T COG3845 255 EVVLEVEDLSVKDR-R-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR 332 (501)
T ss_pred CeEEEEeeeEeecC-C-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHH
Confidence 22489999998643 2 34589999999999999999999999999999999999999999999999997 677887766
Q ss_pred h-cceEEccccc----CCcccHHHHhccCCCC---------CCHHHHHHHHHHhchHHHHHhc---cccccccccCCCCC
Q 000909 1068 K-HTALVSQEPV----IYAGNIRDNIVFGKLD---------ASENEVVEAARAANAHEFISSL---KDGYETECGERGVQ 1130 (1230)
Q Consensus 1068 ~-~i~~VpQdp~----Lf~gTIreNl~~g~~~---------~sd~ei~~al~~a~l~~~i~~l---p~gldt~vge~G~~ 1130 (1230)
+ .++|||.|.+ ....|+.||+.++..+ .+..++.+.+ .+.++++ +.+-+++ -.+
T Consensus 333 ~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a-----~~li~~fdVr~~~~~~~----a~~ 403 (501)
T COG3845 333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFA-----RELIEEFDVRAPSPDAP----ARS 403 (501)
T ss_pred hcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHH-----HHHHHHcCccCCCCCcc----hhh
Confidence 5 6999999984 5677999999765422 1122333222 2334333 1233333 357
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCcEEEE
Q 000909 1131 LSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIK-KLDSIALVADGRVVE 1208 (1230)
Q Consensus 1131 LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive 1208 (1230)
||||+.||+-+||-|.++|++||..+||-+||..+.+.|.+.|.+.. +|+.|++||-+|+.+. -||||.||.+|+|+.
T Consensus 404 LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~ 483 (501)
T COG3845 404 LSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVG 483 (501)
T ss_pred cCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceec
Confidence 99999999999999999999999999999999999999999988875 5899999999999985 579999999999998
Q ss_pred ecCHhH
Q 000909 1209 RGTYAQ 1214 (1230)
Q Consensus 1209 ~Gt~~e 1214 (1230)
..++++
T Consensus 484 ~~~~~~ 489 (501)
T COG3845 484 IVPPEE 489 (501)
T ss_pred cccccc
Confidence 877765
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-54 Score=477.82 Aligned_cols=236 Identities=24% Similarity=0.448 Sum_probs=222.8
Q ss_pred CcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhc
Q 000909 990 GKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKH 1069 (1230)
Q Consensus 990 g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~ 1069 (1230)
|+|+|+||+++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|++||+|+.+++...+|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 579999999999642 3469999999999999999999999999999999999998 78999999999999999999999
Q ss_pred ceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccCC
Q 000909 1070 TALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNP 1149 (1230)
Q Consensus 1070 i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p 1149 (1230)
++||||+|.+|++|+++|+++.. ..++++++++++.+++.+++.++|+++|+.++++|.+||||||||+|||||++++|
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG-KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc-CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999997432 35788999999999999999999999999999999999999999999999999999
Q ss_pred CEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEEEEecCHhHHhhcccccHHHhhh
Q 000909 1150 TILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLATL 1228 (1230)
Q Consensus 1150 ~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~g~y~~l~~~ 1228 (1230)
+||||||||++||+++++.+++.|++.++++|+|+||||++++..||||+||++|++++.|+|++|+++++.|++++..
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 236 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISP 236 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhh
Confidence 9999999999999999999999999888899999999999999999999999999999999999999988888888764
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-52 Score=419.45 Aligned_cols=220 Identities=32% Similarity=0.527 Sum_probs=194.7
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCC-CCHHHHhhh
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRR-LQLKWVRRE 432 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~-~~~~~~r~~ 432 (1230)
-|+++|++++|++ ..||+|||++|++||+++|+||||||||||+++|.|+-+|++|+|.+||.++.. .+...+|++
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 3899999999973 459999999999999999999999999999999999999999999999988743 378889999
Q ss_pred eEEEccCccccch-hHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHh
Q 000909 433 MGLVSQEHALFGT-SIKDNIMFGKL---DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAI 508 (1230)
Q Consensus 433 i~~v~Q~~~l~~~-ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 508 (1230)
+|+|+|+..||+. |+.||+.++.- ..+.++.. ..+.+.++++ |+.......+.+|||||||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~-----~~A~~lL~~V--GL~~ka~~yP~qLSGGQqQRVAIARAL 151 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAR-----EKALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 151 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHH-----HHHHHHHHHc--CchhhhhhCccccCcHHHHHHHHHHHH
Confidence 9999999999976 99999998742 12223222 2233556666 888888889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhhcC
Q 000909 509 IKNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRID 583 (1230)
Q Consensus 509 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 583 (1230)
+.+|+++++|||||||||+...++.+.++++. .|.|.|+|||.+.+++. ||||++||+|+|+++|+++++..++.
T Consensus 152 aM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~ 228 (240)
T COG1126 152 AMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228 (240)
T ss_pred cCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC
Confidence 99999999999999999999999999999864 68999999999999988 99999999999999999999988644
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-51 Score=409.42 Aligned_cols=215 Identities=29% Similarity=0.488 Sum_probs=191.1
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecC-CCChHHHhhc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVR-ELDVHWYRKH 1069 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~-~i~~~~lR~~ 1069 (1230)
-|+++||+.+|. +..||+|||++|++||+++|+||||||||||+++|.+|-+|++|+|.+||.++. +.++..+|++
T Consensus 2 mi~i~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 389999999996 346999999999999999999999999999999999999999999999998773 3378999999
Q ss_pred ceEEcccccCCc-ccHHHHhccCCC---CCCHH----HHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHH
Q 000909 1070 TALVSQEPVIYA-GNIRDNIVFGKL---DASEN----EVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAI 1141 (1230)
Q Consensus 1070 i~~VpQdp~Lf~-gTIreNl~~g~~---~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlal 1141 (1230)
+|+|+|...||. -|+-||+.++.- ..+.+ .-.+.|+++|+.|..+..| .+||||||||+||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHH
Confidence 999999999997 499999987621 22322 3345677788877766554 5799999999999
Q ss_pred HHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhc-CEEEEEeCcEEEEecCHhHHhhcc
Q 000909 1142 ARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQLTHMR 1219 (1230)
Q Consensus 1142 ARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~-D~I~vl~~G~Ive~Gt~~eLl~~~ 1219 (1230)
||||..+|+++++||||||||||.-..+.+.++++. .|.|.|+|||.+...+++ |||+.||+|+|+|+|+|+++..++
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999999999986 488999999999999875 999999999999999999999874
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=454.83 Aligned_cols=228 Identities=27% Similarity=0.441 Sum_probs=201.7
Q ss_pred cccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCCCeEEECCeecC
Q 000909 985 LQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD-----VEQGSVRVDGMDVR 1059 (1230)
Q Consensus 985 ~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~ 1059 (1230)
.|+..+.|+|+||+++|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+|++
T Consensus 74 ~~~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 74 DFNHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred CCCcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 36667889999999999642 3469999999999999999999999999999999999997 57999999999997
Q ss_pred --CCChHHHhhcceEEcccccCCcccHHHHhccCCC--CCCHHHH-----HHHHHHhchHHHHHhccccccccccCCCCC
Q 000909 1060 --ELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKL--DASENEV-----VEAARAANAHEFISSLKDGYETECGERGVQ 1130 (1230)
Q Consensus 1060 --~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~--~~sd~ei-----~~al~~a~l~~~i~~lp~gldt~vge~G~~ 1130 (1230)
++++..+|++++||||+|.+|++|+++||.|+.. ..++++. .++++.+++ ++++++.++++|.+
T Consensus 153 ~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~ 225 (329)
T PRK14257 153 SKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNA 225 (329)
T ss_pred ccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCccc
Confidence 4566789999999999999999999999997632 2445544 344555554 34566788999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCcEEEEe
Q 000909 1131 LSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRVVER 1209 (1230)
Q Consensus 1131 LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~ 1209 (1230)
||||||||+|||||++++|+|||||||||+||+++.+.+++.|++.++++|+|+|||+++++.. ||||+||++|+|+|.
T Consensus 226 LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~ 305 (329)
T PRK14257 226 LSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEA 305 (329)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999999889999999999999988 899999999999999
Q ss_pred cCHhHHhhccc
Q 000909 1210 GTYAQLTHMRG 1220 (1230)
Q Consensus 1210 Gt~~eLl~~~g 1220 (1230)
|+|+++.....
T Consensus 306 g~~~~l~~~~~ 316 (329)
T PRK14257 306 GETKTIFIHPK 316 (329)
T ss_pred CCHHHHhcCCC
Confidence 99999987643
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-49 Score=408.37 Aligned_cols=224 Identities=32% Similarity=0.529 Sum_probs=195.3
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheE
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
|+|+|||++|. ++.+++|+||+|++||+++++|||||||||++|+|.|+++|++|+|++||+++++++...+|++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 78999999997 346999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCccccch-hHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHHhCCCcccc--hhcCCCCCCChhHHHHHHHHHHhc
Q 000909 435 LVSQEHALFGT-SIKDNIMFGKLDA--TMDEVIAAATAANAHNFIRQLPEGYET--KVGERGALLSGGQKQRIAIARAII 509 (1230)
Q Consensus 435 ~v~Q~~~l~~~-ti~~Ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t--~~~~~g~~LSgGqkqri~iARal~ 509 (1230)
||-|..-||+. ||.|||++-..-. +.+++. ..+.+.+..+ |++- ...+.+.+|||||+|||.+||||+
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~-----~r~~ELl~lv--gL~p~~~~~RyP~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIK-----KRADELLDLV--GLDPSEYADRYPHELSGGQQQRVGVARALA 151 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHH-----HHHHHHHHHh--CCCHHHHhhcCchhcCcchhhHHHHHHHHh
Confidence 99999999975 9999999753212 222222 2233444444 6653 567888999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhhcCcHH
Q 000909 510 KNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRIDGHY 586 (1230)
Q Consensus 510 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 586 (1230)
.+|+|+++|||++||||.+++.+++.+.++. -++|+|+|||++++.-+ ||||.+|++|+++..++|++++.++...|
T Consensus 152 adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~F 231 (309)
T COG1125 152 ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDF 231 (309)
T ss_pred cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHH
Confidence 9999999999999999999999999998764 48999999999999755 99999999999999999999998765555
Q ss_pred HH
Q 000909 587 AK 588 (1230)
Q Consensus 587 ~~ 588 (1230)
-+
T Consensus 232 V~ 233 (309)
T COG1125 232 VE 233 (309)
T ss_pred HH
Confidence 43
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=420.54 Aligned_cols=223 Identities=34% Similarity=0.525 Sum_probs=193.6
Q ss_pred EEEEEEEEECCCC--CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCH---HHH
Q 000909 355 IEFEHVKFSYPSR--PDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQL---KWV 429 (1230)
Q Consensus 355 i~~~~v~~~y~~~--~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~---~~~ 429 (1230)
|+++|||+.|+.. +...+|+||||+|++||+.||||+||+|||||++++.++-.|++|+|.+||+|+..++. ...
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999852 12468999999999999999999999999999999999999999999999999988764 456
Q ss_pred hhheEEEccCccccc-hhHHHHHhcCCCCCC--HHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHH
Q 000909 430 RREMGLVSQEHALFG-TSIKDNIMFGKLDAT--MDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIAR 506 (1230)
Q Consensus 430 r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 506 (1230)
|++||++||++.|++ .||.+|++|+..-+. .+++ ..+. .+.++-. |+....+..+.+|||||||||+|||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei--~~RV---~elLelV--gL~dk~~~yP~qLSGGQKQRVaIAR 154 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEI--KQRV---AELLELV--GLSDKADRYPAQLSGGQKQRVAIAR 154 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHH--HHHH---HHHHHHc--CChhhhccCchhcCcchhhHHHHHH
Confidence 789999999999997 699999999754322 2222 1222 2333333 8888888899999999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhhcC
Q 000909 507 AIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRID 583 (1230)
Q Consensus 507 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 583 (1230)
||+.+|+||+.|||||||||+|.+.|.+.|++.. .|-|+++|||.++.++. |||+.||++|+++|+|+..++..++.
T Consensus 155 ALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk 234 (339)
T COG1135 155 ALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPK 234 (339)
T ss_pred HHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcc
Confidence 9999999999999999999999999999998753 48999999999999988 99999999999999999999987654
Q ss_pred c
Q 000909 584 G 584 (1230)
Q Consensus 584 ~ 584 (1230)
.
T Consensus 235 ~ 235 (339)
T COG1135 235 H 235 (339)
T ss_pred h
Confidence 3
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=438.58 Aligned_cols=197 Identities=24% Similarity=0.380 Sum_probs=161.5
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1070 (1230)
-|.|+||+|+|++.+ ..+++++|-|.++++||+|||||+|||||++++.+...|+.|.+.-.-.. ++
T Consensus 389 vi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~~ 455 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------KL 455 (614)
T ss_pred eEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------cc
Confidence 499999999997543 69999999999999999999999999999999999999999998765322 22
Q ss_pred eEEcc---cccCCcccHHHHhccCCC-CCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHc
Q 000909 1071 ALVSQ---EPVIYAGNIRDNIVFGKL-DASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAII 1146 (1230)
Q Consensus 1071 ~~VpQ---dp~Lf~gTIreNl~~g~~-~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll 1146 (1230)
++..| |...++-|.-|++..--+ .-+.+++...+.+.|+...... .++ .+||+|||.|++.||.++
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~------~p~----~~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQV------VPM----SQLSDGQRRRVLFARLAV 525 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccc------cch----hhcccccchhHHHHHHHh
Confidence 33333 334567788888753223 3456778888888888643332 233 479999999999999999
Q ss_pred cCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhc-CEEEEEeCcEEEEe-cCH
Q 000909 1147 RNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVER-GTY 1212 (1230)
Q Consensus 1147 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~-D~I~vl~~G~Ive~-Gt~ 1212 (1230)
++|.||||||||++||.+|-..+.++|+++ ..+||+|||+...|... ++|++.+||.+... |+.
T Consensus 526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 526 KQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred cCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccH
Confidence 999999999999999999999999999986 66899999999999875 99999999998754 444
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=433.48 Aligned_cols=236 Identities=24% Similarity=0.436 Sum_probs=218.5
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhh
Q 000909 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRRE 432 (1230)
Q Consensus 353 ~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~ 432 (1230)
|.|+++|++++|++. ..++|+|+||+|++||+++|+|+||||||||+++|.|+++ ++|+|++||.++..++...+|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 469999999999742 3469999999999999999999999999999999999998 79999999999999999999999
Q ss_pred eEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCC
Q 000909 433 MGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNP 512 (1230)
Q Consensus 433 i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 512 (1230)
|+||||+|.+|++|+++|+.... ..++++++++++..++.+++.++|+|+++.++++|.+||||||||++||||++++|
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG-KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc-CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999997432 24567899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEeCCeEEEecChhHHHhhcCcHHHHHHHH
Q 000909 513 VILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKL 592 (1230)
Q Consensus 513 ~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 592 (1230)
+|+||||||++||+.+++.+++.|++..+++|+|+||||++++..||+|++|++|++++.|+++++++. .+.|++++..
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 236 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISP 236 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhh
Confidence 999999999999999999999999987778999999999999989999999999999999999999984 5777776653
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=395.96 Aligned_cols=218 Identities=30% Similarity=0.487 Sum_probs=198.1
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCC-----CeEEECCeecCC--CCh
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQ-----GSVRVDGMDVRE--LDV 1063 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~-----G~I~idG~di~~--i~~ 1063 (1230)
.++++|+++.|. +..+|+|||++|++++.+|++|||||||||++++|.|+.|... |+|.+||.||-+ ++.
T Consensus 7 ~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 7 AIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred eeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 589999999996 3459999999999999999999999999999999999999876 999999999976 578
Q ss_pred HHHhhcceEEcccccCCcccHHHHhccCCC--C----CCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHH
Q 000909 1064 HWYRKHTALVSQEPVIYAGNIRDNIVFGKL--D----ASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQ 1137 (1230)
Q Consensus 1064 ~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~--~----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 1137 (1230)
-.||+++|+|+|.|.-|..||+||++||.. + .-||-++++|+.|.+||-+.. .| .+.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD---rL----~~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD---RL----HKSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH---Hh----hCCccCCChhHHH
Confidence 999999999999999999999999999832 1 224557889999999998753 33 4567789999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHh
Q 000909 1138 RIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLT 1216 (1230)
Q Consensus 1138 rlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl 1216 (1230)
||||||||.-+|+|||||||||||||-+-..|.+.|.++.++-|+++|||.+.-..+ +|+..++-.|+++|+|.-+++.
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 999999999999999999999999999999999999999999999999999998765 5999999999999999999988
Q ss_pred hc
Q 000909 1217 HM 1218 (1230)
Q Consensus 1217 ~~ 1218 (1230)
.+
T Consensus 237 ~~ 238 (253)
T COG1117 237 TN 238 (253)
T ss_pred cC
Confidence 76
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-49 Score=416.07 Aligned_cols=217 Identities=34% Similarity=0.513 Sum_probs=189.6
Q ss_pred EEEEEEEEECCCC--CCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCC---hHHH
Q 000909 992 IEMRRVDFAYPSR--PDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELD---VHWY 1066 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~--~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~---~~~l 1066 (1230)
|+|+||++.|+.. ...++|+||||+|++||+.||+|+||+|||||++++.||-+|++|+|.+||.|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999752 1245999999999999999999999999999999999999999999999999988776 5566
Q ss_pred hhcceEEcccccCCc-ccHHHHhccCCC--CCCHHH----HHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHH
Q 000909 1067 RKHTALVSQEPVIYA-GNIRDNIVFGKL--DASENE----VVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRI 1139 (1230)
Q Consensus 1067 R~~i~~VpQdp~Lf~-gTIreNl~~g~~--~~sd~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 1139 (1230)
|++||+|+|++.|++ .||.+|++|+-. ..+.++ +.+.|+.+|+.|+-. .-+.+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~-----------~yP~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKAD-----------RYPAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhc-----------cCchhcCcchhhHH
Confidence 789999999999998 799999998642 233443 455666666666544 34568999999999
Q ss_pred HHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHh
Q 000909 1140 AIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLT 1216 (1230)
Q Consensus 1140 alARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl 1216 (1230)
+|||||..+|+||+.|||||||||+|-+.|.+.|++.- -|-|+++|||-++.+++ |||+.||++|+|+|.|+-.++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999998763 38899999999999986 7999999999999999999988
Q ss_pred hcc
Q 000909 1217 HMR 1219 (1230)
Q Consensus 1217 ~~~ 1219 (1230)
.++
T Consensus 231 ~~P 233 (339)
T COG1135 231 ANP 233 (339)
T ss_pred cCc
Confidence 763
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-49 Score=393.41 Aligned_cols=221 Identities=32% Similarity=0.453 Sum_probs=198.6
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC-----ceEEECCeecCC--CC
Q 000909 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADD-----GIVRIDGVDIRR--LQ 425 (1230)
Q Consensus 353 ~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~-----G~i~~~g~~i~~--~~ 425 (1230)
..++++|+++.|+ ++.+|+|||++|++++++|++|||||||||+++++.|+.+... |+|.++|+||.+ ++
T Consensus 6 ~~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 3689999999997 3459999999999999999999999999999999999999875 999999999976 57
Q ss_pred HHHHhhheEEEccCccccchhHHHHHhcCCCC------CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHH
Q 000909 426 LKWVRREMGLVSQEHALFGTSIKDNIMFGKLD------ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQK 499 (1230)
Q Consensus 426 ~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 499 (1230)
...+|++||+|+|.|.-|+.||+||++||..- .-++.++++++.+.+++-++. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 88999999999999999999999999998431 112346778888888876643 36677889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHH
Q 000909 500 QRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDL 578 (1230)
Q Consensus 500 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 578 (1230)
||+||||||.-+|+|||||||||||||.+..+|.+.|.++.++-|+|+|||.+....+ +|+..++..|+++|.|+.+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 9999999999999999999999999999999999999999999999999999999866 999999999999999999999
Q ss_pred HhhcC
Q 000909 579 INRID 583 (1230)
Q Consensus 579 ~~~~~ 583 (1230)
..++.
T Consensus 236 F~~P~ 240 (253)
T COG1117 236 FTNPK 240 (253)
T ss_pred hcCcc
Confidence 87543
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-47 Score=419.54 Aligned_cols=237 Identities=48% Similarity=0.770 Sum_probs=220.3
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcce
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1071 (1230)
|+++||+++|+.. ..++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5789999999642 346999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 000909 1072 LVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTI 1151 (1230)
Q Consensus 1072 ~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p~I 1151 (1230)
|+||++.+|+.|++||+.++.+..+.+++.++++..++.+++..+|.|+++.....+.+||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999986555566677888888999999999999999998889999999999999999999999999
Q ss_pred EEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEEEEecCHhHHhhcccccHHHhhhc
Q 000909 1152 LLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLATLQ 1229 (1230)
Q Consensus 1152 LlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~g~y~~l~~~q 1229 (1230)
|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|++++++++.+.|..+++++
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 237 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQLQ 237 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHHhcC
Confidence 999999999999999999999999877899999999999998899999999999999999999999889998887653
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-46 Score=417.32 Aligned_cols=242 Identities=30% Similarity=0.521 Sum_probs=223.6
Q ss_pred cccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHH
Q 000909 987 KISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWY 1066 (1230)
Q Consensus 987 ~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~l 1066 (1230)
...|.|+++|++++|+.. ..++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+
T Consensus 15 ~~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 15 GLGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred cCCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 356889999999999742 2469999999999999999999999999999999999999999999999999999998899
Q ss_pred hhcceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHc
Q 000909 1067 RKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAII 1146 (1230)
Q Consensus 1067 R~~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll 1146 (1230)
|++++|+||+|.+|++|+++|+.+.. ...+++++++++.+++.+++..+|.|+++.+++.+.+||||||||++||||++
T Consensus 94 ~~~i~~v~q~~~l~~~tv~~nl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 94 RSRLSIILQDPILFSGSIRFNLDPEC-KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred hhhEEEECCCCcccccHHHHhcCcCC-CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999997543 23466788899999999999999999999999999999999999999999999
Q ss_pred cCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEEEEecCHhHHhhc-ccccHHH
Q 000909 1147 RNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHM-RGAFFNL 1225 (1230)
Q Consensus 1147 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~-~g~y~~l 1225 (1230)
++|++|||||||++||+++...+.+.+++..+++|+|++||+++.+..||+|++|++|++++.|+++++++. ++.|+++
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 252 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASL 252 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHH
Confidence 999999999999999999999999999987778999999999999999999999999999999999999986 5778888
Q ss_pred hhhcC
Q 000909 1226 ATLQS 1230 (1230)
Q Consensus 1226 ~~~q~ 1230 (1230)
+..|+
T Consensus 253 ~~~~~ 257 (257)
T cd03288 253 VRTDK 257 (257)
T ss_pred HhccC
Confidence 87664
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-44 Score=383.03 Aligned_cols=471 Identities=20% Similarity=0.229 Sum_probs=350.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChhHHHHHHHHhHHHHHHHHhhhHHHH
Q 000909 78 YFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIF 157 (1230)
Q Consensus 78 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g~l~~r~~~D~~~i~~~~~~~~~~~ 157 (1230)
+++++.++..+.+.+........+++...++|.++.++++..|+.-+++ -+++ .++.++++|+..|. +-...++.+
T Consensus 53 ~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier-~~~~--rlla~L~~Dvr~IS-f~~s~lp~~ 128 (546)
T COG4615 53 EFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIER-LGSA--RLLAGLTSDVRNIS-FAFSRLPEL 128 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-hccc--chhhhhccccccee-ehHhhhHHH
Confidence 3444444445566677777788999999999999999999999999996 4455 99999999999998 545567889
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHH--
Q 000909 158 VMNASVFISGLAFSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAER-- 235 (1230)
Q Consensus 158 ~~~~~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~-- 235 (1230)
.++.+..+++++.+.++++++.++.++++.+.++...+...+..+......+..+++.+..+..++|.|+.+...--.
T Consensus 129 ~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~ 208 (546)
T COG4615 129 VQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEY 208 (546)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHH
Confidence 999999999999999999999888888888888888888888888888889999999999999999999999875322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 236 RIIDRYEAILDSTTKLGIKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPE 314 (1230)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~ 314 (1230)
...+.|...-+..++..............+. .+.+....+++|.... .+..+.....++......+..|+.++...
T Consensus 209 ~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~---~~w~st~~a~tivlvlLflr~pL~s~vgi 285 (546)
T COG4615 209 VHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALS---LGWASTNVAATIVLVLLFLRTPLLSAVGI 285 (546)
T ss_pred HHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hccchhhHHHHHHHHHHHHhhHHHHHHhh
Confidence 2223332222222221111111111111111 1222223333333221 12223333334444455566789999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcccCCccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCC
Q 000909 315 LKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGS 394 (1230)
Q Consensus 315 ~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGs 394 (1230)
++.+..+.++.++|.++-..++..+- .. ....++ -..||++||.|+|+.. ..-+..||++|++||++-|+|.|||
T Consensus 286 lP~l~~AqvA~~kiakle~~~~~a~~-~~-~q~~p~-~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGs 360 (546)
T COG4615 286 LPTLLTAQVAFNKIAKLELAPYKADF-PR-PQAFPD-WKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGS 360 (546)
T ss_pred hhHHHHHHHHHHHHHHhhcCCccccC-CC-CCcCCc-ccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCC
Confidence 99999999999999886543322111 11 111122 3479999999999743 2468899999999999999999999
Q ss_pred cHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheEEEccCccccchhHHHHHhcCCCC-CCHHHHHHHHHHHhHH
Q 000909 395 GKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLD-ATMDEVIAAATAANAH 473 (1230)
Q Consensus 395 GKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~-~~~~~~~~~~~~~~~~ 473 (1230)
||||++++|.|+|+|++|+|++||.+++.-+++++|+-++-|+-|.|||+.++ |.+. ++.+.+...++.-.+.
T Consensus 361 GKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~ 434 (546)
T COG4615 361 GKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELA 434 (546)
T ss_pred cHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998765 3333 5555555444433332
Q ss_pred HHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCCeEEEEecC
Q 000909 474 NFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQA--SLGRTTLVVAHK 551 (1230)
Q Consensus 474 ~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~--~~~~t~i~itH~ 551 (1230)
... ++.+|--+ ...||-|||.|+|+--|++-+.||++|||=-+--||.=++.+.+.+... ..|||++.||||
T Consensus 435 ~kt-sl~d~~fs-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHD 508 (546)
T COG4615 435 HKT-SLNDGRFS-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHD 508 (546)
T ss_pred hhh-cccCCccc-----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecC
Confidence 211 22222111 1469999999999999999999999999999999999988887776543 359999999999
Q ss_pred chhhhccCEEEEEeCCeEEEe
Q 000909 552 LSTVRNADLIAVVDNGCLVEI 572 (1230)
Q Consensus 552 l~~~~~~d~i~~l~~G~i~~~ 572 (1230)
-.+...|||++.|++|+++|.
T Consensus 509 d~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 509 DHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred chhhhhHHHHHHHhcCceeec
Confidence 999999999999999999985
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-47 Score=390.07 Aligned_cols=214 Identities=28% Similarity=0.456 Sum_probs=189.4
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcce
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1071 (1230)
|+|+|||++|. +..+++|+||+|++||.+.++|||||||||+++++.|+.+|++|+|+|||.||++++..+||++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 79999999996 346999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccccCCc-ccHHHHhccCC--CCCCH----HHHHHHHHHhchH--HHHHhccccccccccCCCCCCChhHHHHHHHH
Q 000909 1072 LVSQEPVIYA-GNIRDNIVFGK--LDASE----NEVVEAARAANAH--EFISSLKDGYETECGERGVQLSGGQRQRIAIA 1142 (1230)
Q Consensus 1072 ~VpQdp~Lf~-gTIreNl~~g~--~~~sd----~ei~~al~~a~l~--~~i~~lp~gldt~vge~G~~LSgGQrQrlalA 1142 (1230)
||-|..-||. -||.|||++-. ..-+. +++.+-++.+++. +|..+. +..|||||+||+.+|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----------P~eLSGGQQQRVGv~ 147 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRY-----------PHELSGGQQQRVGVA 147 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----------chhcCcchhhHHHHH
Confidence 9999999996 59999998521 12233 3455566666664 354444 457999999999999
Q ss_pred HHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhh-hhcCEEEEEeCcEEEEecCHhHHhhcc
Q 000909 1143 RAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTI-KKLDSIALVADGRVVERGTYAQLTHMR 1219 (1230)
Q Consensus 1143 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti-~~~D~I~vl~~G~Ive~Gt~~eLl~~~ 1219 (1230)
|||..+|+||++|||.+||||-|...+|+-+.+..+ ++|+|+|||+++.. +-+|||.||++|+|+.+|+|+++++++
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999987653 89999999999875 567999999999999999999999873
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-46 Score=425.86 Aligned_cols=228 Identities=28% Similarity=0.435 Sum_probs=195.2
Q ss_pred ccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCeecCC--
Q 000909 351 VRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD-----ADDGIVRIDGVDIRR-- 423 (1230)
Q Consensus 351 ~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~i~~-- 423 (1230)
..+.|+++|++++|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++..
T Consensus 77 ~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 77 HANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred cCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 34679999999999642 3469999999999999999999999999999999999997 579999999999974
Q ss_pred CCHHHHhhheEEEccCccccchhHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHH
Q 000909 424 LQLKWVRREMGLVSQEHALFGTSIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQR 501 (1230)
Q Consensus 424 ~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 501 (1230)
.+...+|+.++||||+|++|++|++|||.|+.. ..++++.++......++. ..+++++++.++++|.+||||||||
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~--~~L~~~l~~~~~~~~~~LSgGqkqR 233 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKS--AALWDEVKDDLDKAGNALSGGQQQR 233 (329)
T ss_pred cchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHH--cCCcchhhhhhhCCcccCCHHHHHH
Confidence 455678999999999999999999999998642 122333322211111111 1245567788999999999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 502 IAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 502 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
++||||++++|+|||||||||+||+++.+.+.+.|+++.+++|+|+|||+++++.. ||+|++|++|++++.|+++++..
T Consensus 234 l~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~ 313 (329)
T PRK14257 234 LCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFI 313 (329)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999988788999999999999987 99999999999999999999986
Q ss_pred h
Q 000909 581 R 581 (1230)
Q Consensus 581 ~ 581 (1230)
.
T Consensus 314 ~ 314 (329)
T PRK14257 314 H 314 (329)
T ss_pred C
Confidence 4
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=406.08 Aligned_cols=236 Identities=48% Similarity=0.777 Sum_probs=219.8
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcce
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1071 (1230)
|+++|++++|++ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++++.+...+|+.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 478999999963 235999999999999999999999999999999999999999999999999999988888999999
Q ss_pred EEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 000909 1072 LVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTI 1151 (1230)
Q Consensus 1072 ~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p~I 1151 (1230)
|+||+|.+|++|+++|+.++.+..+++++.++++.+++.+.+..+|.|+++.+.....+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655667778888999999999999999999999988999999999999999999999999
Q ss_pred EEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEEEEecCHhHHhhcccccHHHhhhc
Q 000909 1152 LLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLATLQ 1229 (1230)
Q Consensus 1152 LlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~g~y~~l~~~q 1229 (1230)
|||||||++||+++...+.+.|.+..++.|+|++||+++.+..||++++|++|++++.|+++++.++.+.|..++..|
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 236 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMWKAQ 236 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHHHHhcC
Confidence 999999999999999999999998766889999999999999999999999999999999999998888888777653
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=405.52 Aligned_cols=233 Identities=52% Similarity=0.858 Sum_probs=216.3
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcce
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1071 (1230)
|+++|++++|+++ +.++|+|+||++++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999643 236999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 000909 1072 LVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTI 1151 (1230)
Q Consensus 1072 ~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p~I 1151 (1230)
|+||+|.+|+.|++||+.++....+.+++.+.++..++.++++.+|.|+++.++.....||||||||++|||||+++|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655566677788888899999999999999999988999999999999999999999999
Q ss_pred EEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEEEEecCHhHHhhcccccHHH
Q 000909 1152 LLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNL 1225 (1230)
Q Consensus 1152 LlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~g~y~~l 1225 (1230)
|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++.+..+.|+.+
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 233 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcchhhh
Confidence 99999999999999999999999987889999999999999999999999999999999999999887777654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-45 Score=405.21 Aligned_cols=237 Identities=58% Similarity=0.960 Sum_probs=217.5
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcce
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1071 (1230)
|+++|++++|+...+.++|+|+||++++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999997433346999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 000909 1072 LVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTI 1151 (1230)
Q Consensus 1072 ~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p~I 1151 (1230)
|+||+|.+|+.|++||+.++.+....+++.+.++..++.+++..+|.|+++..+....+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987555556677788888899999999999999999988999999999999999999999999
Q ss_pred EEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEEEEecCHhHHhhcccccHHHhhh
Q 000909 1152 LLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLATL 1228 (1230)
Q Consensus 1152 LlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~g~y~~l~~~ 1228 (1230)
|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++.+..+.++.++..
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 237 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLVKA 237 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHHHHhhc
Confidence 99999999999999999999999876789999999999999989999999999999999999998877777766654
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-45 Score=403.72 Aligned_cols=234 Identities=50% Similarity=0.832 Sum_probs=213.3
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheE
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
|+++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5789999999642 346999999999999999999999999999999999999999999999999998888778889999
Q ss_pred EEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCCCE
Q 000909 435 LVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVI 514 (1230)
Q Consensus 435 ~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~i 514 (1230)
|++|++++|+.|++||+.++.+....+++.+.++..++.++++.+|.|+++..+..+.+||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999987544445566667777788899999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEeCCeEEEecChhHHHhhcCcHHHHHH
Q 000909 515 LLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMA 590 (1230)
Q Consensus 515 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 590 (1230)
+||||||++||+.+...+.+.|++..+|+|+|++||+++.+..||++++|++|++++.|+++++.+. .+.|..++
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~ 234 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLY 234 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHH
Confidence 9999999999999999999999987778999999999999988999999999999999999999875 67777654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=378.48 Aligned_cols=223 Identities=32% Similarity=0.506 Sum_probs=191.4
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHH---HH
Q 000909 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLK---WV 429 (1230)
Q Consensus 353 ~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~---~~ 429 (1230)
..|++++|+++|++ +.+++|+||+|++||+++|+||||||||||+++|.|+..|++|+|.++|+|+.+++.+ .+
T Consensus 7 ~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 46999999999963 5699999999999999999999999999999999999999999999999999988754 57
Q ss_pred hhheEEEccCccccch-hHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHHhCCCcccch-hcCCCCCCChhHHHHHHH
Q 000909 430 RREMGLVSQEHALFGT-SIKDNIMFGKLD---ATMDEVIAAATAANAHNFIRQLPEGYETK-VGERGALLSGGQKQRIAI 504 (1230)
Q Consensus 430 r~~i~~v~Q~~~l~~~-ti~~Ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~-~~~~g~~LSgGqkqri~i 504 (1230)
|+++|+++|...||+. ||+||+.|...+ .+.+.+.+.+ .. .++.. |+... ....+++||||++.|+||
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv-~~----KL~~V--GL~~~~~~~~PsELSGGM~KRvaL 156 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV-LM----KLELV--GLRGAAADLYPSELSGGMRKRVAL 156 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHH-HH----HHHhc--CCChhhhhhCchhhcchHHHHHHH
Confidence 8999999999999976 999999986432 2233332222 11 13333 66665 455678999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhh
Q 000909 505 ARAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 505 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 581 (1230)
|||+..||+|+++|||||+|||.+...+.+.|+++. -|.|+++|||+++++.. ||+|+++.+|+|+..|+++|+.+.
T Consensus 157 ARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~s 236 (263)
T COG1127 157 ARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS 236 (263)
T ss_pred HHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999998765 38999999999999977 999999999999999999999985
Q ss_pred cCcHH
Q 000909 582 IDGHY 586 (1230)
Q Consensus 582 ~~~~~ 586 (1230)
+..|
T Consensus 237 -d~P~ 240 (263)
T COG1127 237 -DDPW 240 (263)
T ss_pred -CCHH
Confidence 4433
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-45 Score=402.24 Aligned_cols=229 Identities=45% Similarity=0.821 Sum_probs=213.5
Q ss_pred CcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhc
Q 000909 990 GKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKH 1069 (1230)
Q Consensus 990 g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~ 1069 (1230)
|+|+++|++++|+. ..++++|+||++++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 46999999999963 2359999999999999999999999999999999999999999999999999998888889999
Q ss_pred ceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccCC
Q 000909 1070 TALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNP 1149 (1230)
Q Consensus 1070 i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p 1149 (1230)
++|+||+|.+|++|++||+.++.+....+++.++++..++.++++.+|.|+++.++....+||||||||++|||||+++|
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876555667788889999999999999999999999889999999999999999999999
Q ss_pred CEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEEEEecCHhHHhhccc
Q 000909 1150 TILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRG 1220 (1230)
Q Consensus 1150 ~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~g 1220 (1230)
++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+..||+|++|++|++++.|++++++++.|
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~~~ 229 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKKG 229 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhhCC
Confidence 99999999999999999999999998877899999999999999999999999999999999999887643
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-46 Score=396.43 Aligned_cols=223 Identities=29% Similarity=0.456 Sum_probs=188.6
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhhe
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREM 433 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i 433 (1230)
.++++|++|+|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+.+|.+|+|++||+++.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 4789999999973 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCcc-ccchhHHHHHhcCCCCC-CHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccC
Q 000909 434 GLVSQEHA-LFGTSIKDNIMFGKLDA-TMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKN 511 (1230)
Q Consensus 434 ~~v~Q~~~-l~~~ti~~Ni~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 511 (1230)
|||||++. -|.-||+|-+.+|+... +.-..+...+...+.+.++.+ |+.....+.-.+||||||||+.|||||+++
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~--~~~~la~r~~~~LSGGerQrv~iArALaQ~ 156 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELL--GLEHLADRPVDELSGGERQRVLIARALAQE 156 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHh--CcHHHhcCcccccChhHHHHHHHHHHHhcC
Confidence 99999975 45669999999996421 100000001111112223333 555556667788999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhh-hccCEEEEEeCCeEEEecChhHHHhh
Q 000909 512 PVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 512 ~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~ 581 (1230)
|+||+||||||+||...+.++++.++++. +|+|+|+|.|++... +.||++++|++|+++.+|+++|.+..
T Consensus 157 ~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~ 229 (258)
T COG1120 157 TPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTE 229 (258)
T ss_pred CCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCH
Confidence 99999999999999999999999999865 589999999999886 56999999999999999999998863
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-45 Score=398.93 Aligned_cols=221 Identities=35% Similarity=0.615 Sum_probs=207.3
Q ss_pred CcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhc
Q 000909 990 GKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKH 1069 (1230)
Q Consensus 990 g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~ 1069 (1230)
|.|+++|++++|+.. +.++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 469999999999743 2469999999999999999999999999999999999999999999999999999898899999
Q ss_pred ceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccCC
Q 000909 1070 TALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNP 1149 (1230)
Q Consensus 1070 i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p 1149 (1230)
++|+||+|.+|++|++||+.+.. ..+.+++.++++..++.+++.++|.|+++.+++.+.+||||||||++||||++++|
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFG-EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEEECCCCccccchHHHHhCcCC-CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998654 35677889999999999999999999999999999999999999999999999999
Q ss_pred CEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEEEEecCH
Q 000909 1150 TILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTY 1212 (1230)
Q Consensus 1150 ~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~ 1212 (1230)
++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence 999999999999999999999999988778999999999999999999999999999998863
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=377.08 Aligned_cols=222 Identities=34% Similarity=0.553 Sum_probs=192.3
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCC---HHHHh
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQ---LKWVR 430 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~---~~~~r 430 (1230)
.|+++||+..||+ ++.+|+||||+|++||++|||||||||||||+++|.|+.+|++|+|.++|.++...+ ...+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 5899999999984 457999999999999999999999999999999999999999999999999998876 56778
Q ss_pred hheEEEccCccccch-hHHHHHhcCCCCCC--HHHH---HHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHH
Q 000909 431 REMGLVSQEHALFGT-SIKDNIMFGKLDAT--MDEV---IAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAI 504 (1230)
Q Consensus 431 ~~i~~v~Q~~~l~~~-ti~~Ni~~~~~~~~--~~~~---~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 504 (1230)
++|||++|++.|.+. |+.+|+..|..... ...+ ....++..+.+.++++ |+......+..+|||||+|||+|
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLerv--gi~~~A~qra~~LSGGQQQRVaI 158 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERV--GILDKAYQRASTLSGGQQQRVAI 158 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHc--CcHHHHHHHhccCCcchhHHHHH
Confidence 899999999999876 99999998864321 1100 1112233344556666 77777778889999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHH
Q 000909 505 ARAIIKNPVILLLDEATSALDSESETLVQNALDQA--SLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLI 579 (1230)
Q Consensus 505 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~--~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 579 (1230)
||||+++|+|+|-|||+|+|||.+.+.+++.|++. ..|.|+|+.-|.++.+++ ||||+-|++|+|+..|+.+|+-
T Consensus 159 ARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~ 236 (258)
T COG3638 159 ARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELT 236 (258)
T ss_pred HHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhh
Confidence 99999999999999999999999999999999875 468999999999999876 9999999999999999999964
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=407.64 Aligned_cols=221 Identities=34% Similarity=0.537 Sum_probs=190.6
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhhe
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREM 433 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i 433 (1230)
.|+++||+++|++. .+++|+||+|++||+++|+|||||||||++++|+|+.+|++|+|.|||.+++++++++ ++|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999742 1899999999999999999999999999999999999999999999999999999875 789
Q ss_pred EEEccCccccch-hHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhcc
Q 000909 434 GLVSQEHALFGT-SIKDNIMFGKLDA--TMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIK 510 (1230)
Q Consensus 434 ~~v~Q~~~l~~~-ti~~Ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 510 (1230)
|+|||+..||+. ||+|||+||.... ..+++.+..+ +..+.| +++..+..++.+|||||||||||||||++
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~-----eva~~L--~l~~lL~r~P~~LSGGQrQRVAlaRAlVr 150 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVK-----EVAKLL--GLEHLLNRKPLQLSGGQRQRVALARALVR 150 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHH-----HHHHHc--CChhHHhcCcccCChhhHHHHHHHHHHhc
Confidence 999999999976 9999999986532 2333322111 112233 66667777788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhhcCcHH
Q 000909 511 NPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRIDGHY 586 (1230)
Q Consensus 511 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 586 (1230)
+|++++||||+|+||++.+..+...|+++. .+.|+|+||||..++.. ||||.||++|+|.+.|++.|+.+++...+
T Consensus 151 ~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n~f 229 (338)
T COG3839 151 KPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLF 229 (338)
T ss_pred CCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccchh
Confidence 999999999999999999999988888754 37899999999999876 99999999999999999999998655443
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-45 Score=382.75 Aligned_cols=210 Identities=35% Similarity=0.518 Sum_probs=175.7
Q ss_pred EEEEEEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHH---H-
Q 000909 355 IEFEHVKFSYPSRP-DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKW---V- 429 (1230)
Q Consensus 355 i~~~~v~~~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~---~- 429 (1230)
++++||++.|.... ...+|+++||+|++||++||+||||||||||+++|.|+..|++|.|.++|.|+..++.+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996432 246999999999999999999999999999999999999999999999999999887533 3
Q ss_pred hhheEEEccCccccch-hHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCcccchhc-CCCCCCChhHHHHHHHH
Q 000909 430 RREMGLVSQEHALFGT-SIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYETKVG-ERGALLSGGQKQRIAIA 505 (1230)
Q Consensus 430 r~~i~~v~Q~~~l~~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~-~~g~~LSgGqkqri~iA 505 (1230)
|++||||+|+..|++. |++|||.++.. .....+. .....+.++.+ |+..... ..+.+||||||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~-----~~~~~~l~~~l--gl~~~~~~~~p~eLSGGqqQRVAIA 154 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRR-----KRAAEELLEVL--GLEDRLLKKKPSELSGGQQQRVAIA 154 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHH-----HHHHHHHHHhc--CChhhhccCCchhcCHHHHHHHHHH
Confidence 5679999999999976 99999995321 1111111 11122334444 7765554 77889999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhccCEEEEEeCCeEEE
Q 000909 506 RAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRNADLIAVVDNGCLVE 571 (1230)
Q Consensus 506 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~ 571 (1230)
|||+.+|+|++.||||++||+++.+.+.+.+.+.. .|+|+|+|||+......|||++.|+||++.+
T Consensus 155 RAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 155 RALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 99999999999999999999999999999999873 4899999999999999999999999999543
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=402.55 Aligned_cols=195 Identities=24% Similarity=0.325 Sum_probs=161.7
Q ss_pred CcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhc
Q 000909 990 GKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKH 1069 (1230)
Q Consensus 990 g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~ 1069 (1230)
..+++.+|+|.|+..+. +.++++++.+..-+++++||++|+||||+++++.+-..|..|.+-+.+ |.+
T Consensus 361 p~l~i~~V~f~y~p~~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CeeEEEeeeccCCCcch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 35999999999974422 699999999999999999999999999999999999999999998876 788
Q ss_pred ceEEcccccCC-cccHHH--HhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHc
Q 000909 1070 TALVSQEPVIY-AGNIRD--NIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAII 1146 (1230)
Q Consensus 1070 i~~VpQdp~Lf-~gTIre--Nl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll 1146 (1230)
|+|-.|..+=| +-.+.. -+.-..|+.+++|+++.|...|+..-+..- .-..||||||=|+++|-+..
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~----------si~~LSGGQKsrvafA~~~~ 498 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQ----------SIASLSGGQKSRVAFAACTW 498 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhc----------cccccCCcchhHHHHHHHhc
Confidence 99999977543 212111 111113556899999998888775544321 12469999999999999999
Q ss_pred cCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCcEEEE
Q 000909 1147 RNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRVVE 1208 (1230)
Q Consensus 1147 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive 1208 (1230)
.+|.+|||||||..||.++-..+-++|+.. +.-||+|||+.+.+.. |+.++|.++|+|..
T Consensus 499 ~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 499 NNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 999999999999999999999999999875 4479999999999985 69999999999975
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=400.25 Aligned_cols=240 Identities=34% Similarity=0.518 Sum_probs=217.0
Q ss_pred CccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHH
Q 000909 350 EVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWV 429 (1230)
Q Consensus 350 ~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~ 429 (1230)
...+.|+++|++++|++. ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+
T Consensus 15 ~~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 15 GLGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred cCCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 346789999999999742 2469999999999999999999999999999999999999999999999999998888888
Q ss_pred hhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhc
Q 000909 430 RREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAII 509 (1230)
Q Consensus 430 r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 509 (1230)
++.|+|++|++++|++|++||+..... ...+++.++.+..++.+.+..+|.|+++.+++.+.+||||||||++||||++
T Consensus 94 ~~~i~~v~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 94 RSRLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred hhhEEEECCCCcccccHHHHhcCcCCC-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999976432 2345566777777888999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEeCCeEEEecChhHHHhhcCcHHHHH
Q 000909 510 KNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKM 589 (1230)
Q Consensus 510 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 589 (1230)
++|+++||||||++||+++++.+.+.+++..+++|+|++||+++.+..||+|++|++|++++.|+++++.+..++.|+++
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 252 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASL 252 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHH
Confidence 99999999999999999999999999988777899999999999998899999999999999999999987545667766
Q ss_pred HH
Q 000909 590 AK 591 (1230)
Q Consensus 590 ~~ 591 (1230)
+.
T Consensus 253 ~~ 254 (257)
T cd03288 253 VR 254 (257)
T ss_pred Hh
Confidence 54
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-45 Score=409.38 Aligned_cols=223 Identities=32% Similarity=0.524 Sum_probs=190.9
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhh
Q 000909 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRRE 432 (1230)
Q Consensus 353 ~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~ 432 (1230)
..|+++||+++|+ +..+++|+||+|++||+++++|||||||||++++|+||.+|++|+|.+||+++.+++++ ++.
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 3699999999997 35699999999999999999999999999999999999999999999999999999886 578
Q ss_pred eEEEccCccccch-hHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHh
Q 000909 433 MGLVSQEHALFGT-SIKDNIMFGKLD---ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAI 508 (1230)
Q Consensus 433 i~~v~Q~~~l~~~-ti~~Ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 508 (1230)
||+|+|+..||+. ||+|||+||... ...+++.+ .+.+.++.+ |++..-.+++.+|||||+|||||||||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~-----rv~e~L~lV--~L~~~~~R~p~qLSGGQqQRVALARAL 151 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKA-----RVEEALELV--GLEGFADRKPHQLSGGQQQRVALARAL 151 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHH-----HHHHHHHHc--CchhhhhhChhhhChHHHHHHHHHHHh
Confidence 9999999999975 999999999651 12222211 112223333 555566777889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhh-ccCEEEEEeCCeEEEecChhHHHhhcCcH
Q 000909 509 IKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVR-NADLIAVVDNGCLVEIGTHNDLINRIDGH 585 (1230)
Q Consensus 509 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 585 (1230)
..+|++||||||.||||.+-+..++..++++. .|.|.|+|||+-++.. .+|||.||++|+|...|+++|+...+...
T Consensus 152 ~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~~ 231 (352)
T COG3842 152 VPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATR 231 (352)
T ss_pred hcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcchH
Confidence 99999999999999999999999998888753 4899999999999875 59999999999999999999999865544
Q ss_pred HH
Q 000909 586 YA 587 (1230)
Q Consensus 586 ~~ 587 (1230)
|-
T Consensus 232 fV 233 (352)
T COG3842 232 FV 233 (352)
T ss_pred HH
Confidence 43
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=410.97 Aligned_cols=220 Identities=21% Similarity=0.428 Sum_probs=186.1
Q ss_pred cEEEEEEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCC-------
Q 000909 991 KIEMRRVDFAYPSRP--DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVREL------- 1061 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i------- 1061 (1230)
.|+++||+|+|+... ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 599999999997421 23699999999999999999999999999999999999999999999999998653
Q ss_pred ---------ChHHHhhcceEEcccc--cCCcccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHHhcccccc-ccccCC
Q 000909 1062 ---------DVHWYRKHTALVSQEP--VIYAGNIRDNIVFGKL--DASENEVVEAARAANAHEFISSLKDGYE-TECGER 1127 (1230)
Q Consensus 1062 ---------~~~~lR~~i~~VpQdp--~Lf~gTIreNl~~g~~--~~sd~ei~~al~~a~l~~~i~~lp~gld-t~vge~ 1127 (1230)
+...+|++++||+|+| .+|++|++||+.++.. +.+.++..+ .+ .++++.+ |++ ...+..
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~~--~~~l~~~--gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK---LA--KFYLNKM--GLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH---HH--HHHHHHc--CCChhHhcCC
Confidence 3567899999999998 6999999999988632 234433322 11 2334443 443 345677
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhh-hhcCEEEEEeCcE
Q 000909 1128 GVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTI-KKLDSIALVADGR 1205 (1230)
Q Consensus 1128 G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti-~~~D~I~vl~~G~ 1205 (1230)
+.+||||||||++|||||+++|+|||||||||+||+.+++.+.+.|++.. +++|+|+|||+++.+ ..||+|++|++|+
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~ 253 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 88999999999999999999999999999999999999999999998764 589999999999987 4689999999999
Q ss_pred EEEecCHhHHhh
Q 000909 1206 VVERGTYAQLTH 1217 (1230)
Q Consensus 1206 Ive~Gt~~eLl~ 1217 (1230)
+++.|+|+++.+
T Consensus 254 i~~~g~~~~~~~ 265 (320)
T PRK13631 254 ILKTGTPYEIFT 265 (320)
T ss_pred EEEeCCHHHHhc
Confidence 999999997643
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=395.26 Aligned_cols=480 Identities=16% Similarity=0.156 Sum_probs=358.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccc---CChhHHHHHHhhhHHHHHHHHH
Q 000909 706 TYSLIFCSLSLISLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQ---NSSGALCSRLSNEASMVKSLVA 782 (1230)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~~fd~~~---~~~G~l~~r~s~D~~~i~~~~~ 782 (1230)
....+|.+++.+...+...+.|+......++-.-+-+.+..+-+...-.|+.... +..-..=+|+.+|+...-....
T Consensus 87 ~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~ 166 (604)
T COG4178 87 QQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTL 166 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHH
Confidence 3356677777777888888888888888888888888888888877744443211 1112345799999988877666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000909 783 DRVSLLVQTTSAVAIAMIMGL---------------VVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQ 847 (1230)
Q Consensus 783 ~~l~~~~~~~~~~~~~~~~~~---------------~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (1230)
.....++.++.+++...+++. .++..+.++++..+++..+..++..+.+.+..-+..+.++....
T Consensus 167 ~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~ 246 (604)
T COG4178 167 DLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRY 246 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHH
Confidence 666666777666665555544 22333344444445555555555556666666666667777777
Q ss_pred HHHHHHhchHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHH
Q 000909 848 IAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVF 927 (1230)
Q Consensus 848 ~~~e~l~g~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~ 927 (1230)
...-.-++.+.|..|+.|+...++.++..+.......+..........+.....++...+-+..++-....|.++.|.++
T Consensus 247 ~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lm 326 (604)
T COG4178 247 SLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLM 326 (604)
T ss_pred HHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHH
Confidence 77777788899999999988877766666655554444433333334444444444445555566667889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--CCCCCCCCCCCCCCCCcccccCcEEEEEEEEECCCCC
Q 000909 928 KTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQS--LIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRP 1005 (1230)
Q Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~ 1005 (1230)
.+..++......++.+....+.+..-.....|+.++.+.-. +.+.+.....+..-.........|+|+|++..-|+.
T Consensus 327 qa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~- 405 (604)
T COG4178 327 QAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG- 405 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC-
Confidence 99999999999999999999999999999999988874322 111110000000000001014679999999999853
Q ss_pred CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcceEEcccccCCcccHH
Q 000909 1006 DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIR 1085 (1230)
Q Consensus 1006 ~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIr 1085 (1230)
.+.|+++||.|+|||.+-|.|+||||||||+++|.|+++--+|+|..-. -..+-++||.|++-.||+|
T Consensus 406 -~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtLr 473 (604)
T COG4178 406 -QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTLR 473 (604)
T ss_pred -CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCccHH
Confidence 3689999999999999999999999999999999999999999987751 1346899999999999999
Q ss_pred HHhccCCCC--CCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCH
Q 000909 1086 DNIVFGKLD--ASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDV 1163 (1230)
Q Consensus 1086 eNl~~g~~~--~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~ 1163 (1230)
|-|.|+++. .+|+++.++|.+|++.++++++.+ .+. -..-||+|||||||+||.++++|++++|||||||||+
T Consensus 474 e~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~-~~~----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe 548 (604)
T COG4178 474 EALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE-EDR----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDE 548 (604)
T ss_pred HHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc-cCc----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccCh
Confidence 999998754 899999999999999999998743 222 3457999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeC
Q 000909 1164 QSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVAD 1203 (1230)
Q Consensus 1164 ~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~ 1203 (1230)
++|..+.+.+++...++|+|.|+||.....-.++.+-+++
T Consensus 549 ~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 549 ETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred HHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeecc
Confidence 9999999999999999999999999888777777666543
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-45 Score=358.28 Aligned_cols=207 Identities=30% Similarity=0.468 Sum_probs=179.2
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCH---HHHhh
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQL---KWVRR 431 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~---~~~r~ 431 (1230)
|+|+||++.|++. +++|+||||+|++||++-++||||||||||+|+|.+...|+.|+|.++|.|+..+.. .-+|+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7899999999864 569999999999999999999999999999999999999999999999999988754 46899
Q ss_pred heEEEccCccccch-hHHHHHhcCCCC--CCH----HHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHH
Q 000909 432 EMGLVSQEHALFGT-SIKDNIMFGKLD--ATM----DEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAI 504 (1230)
Q Consensus 432 ~i~~v~Q~~~l~~~-ti~~Ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 504 (1230)
+||+|+||..|... ||+||++|...- .+. +++.++++.+++.+-. ..-+.+|||||+||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~-----------~~lP~~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKA-----------RALPSQLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhh-----------hcCccccCchHHHHHHH
Confidence 99999999998755 999999986431 122 2344555555444444 44457899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecC
Q 000909 505 ARAIIKNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGT 574 (1230)
Q Consensus 505 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~ 574 (1230)
|||++.+|++||-||||.+|||++...|++.+.+.. .|.||++.||+.+.+.. --|++.+++|+++....
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999998864 59999999999999977 57999999999987644
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-45 Score=354.05 Aligned_cols=209 Identities=35% Similarity=0.549 Sum_probs=185.0
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheE
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
|.+++|.|+|...+ -.++++|++||++||+||||||||||+++|+||..|.+|+|.|+|+|....++. ++-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 56789999996432 357899999999999999999999999999999999999999999999887765 46799
Q ss_pred EEccCccccch-hHHHHHhcCCCC------CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHH
Q 000909 435 LVSQEHALFGT-SIKDNIMFGKLD------ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARA 507 (1230)
Q Consensus 435 ~v~Q~~~l~~~-ti~~Ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 507 (1230)
+++||..||.. ||++||.+|... ...+++..++...++..+.+++| .+||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHH
Confidence 99999999975 999999999531 12356778888888888888887 4799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhh
Q 000909 508 IIKNPVILLLDEATSALDSESETLVQNALDQA--SLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 508 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~--~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 581 (1230)
|+++-+|++||||+|+|||.-+.++...+.++ .++.|+++|||.++.+.. +|+++++++|+|.++|+.+++...
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 99999999999999999999999998888775 358899999999999876 999999999999999999998764
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-45 Score=388.07 Aligned_cols=214 Identities=31% Similarity=0.487 Sum_probs=192.2
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1070 (1230)
.++++||+|+|+ ++++|+|+||+|++||.++|+||||||||||+++|.|+..|.+|+|++||.|+.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 378999999996 34699999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEcccc-cCCcccHHHHhccCCCC-------CC--H-HHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHH
Q 000909 1071 ALVSQEP-VIYAGNIRDNIVFGKLD-------AS--E-NEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRI 1139 (1230)
Q Consensus 1071 ~~VpQdp-~Lf~gTIreNl~~g~~~-------~s--d-~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 1139 (1230)
+||||++ .-|.-||+|=+.+|+-. .+ | +.+.+|++..++.++..+ .-..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----------~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----------PVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----------cccccChhHHHHH
Confidence 9999996 45677999999988521 12 3 357789999999988653 2346999999999
Q ss_pred HHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhh-hhcCEEEEEeCcEEEEecCHhHHh
Q 000909 1140 AIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTI-KKLDSIALVADGRVVERGTYAQLT 1216 (1230)
Q Consensus 1140 alARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti-~~~D~I~vl~~G~Ive~Gt~~eLl 1216 (1230)
.|||||.++|+||+||||||+||...+-.|.+.+++.. +|+|+|+|.|+++.. +.||++++|++|+|+..|+|+|.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999875 479999999999875 567999999999999999999887
Q ss_pred hc
Q 000909 1217 HM 1218 (1230)
Q Consensus 1217 ~~ 1218 (1230)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 54
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-45 Score=379.10 Aligned_cols=199 Identities=34% Similarity=0.454 Sum_probs=172.5
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhhe
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREM 433 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i 433 (1230)
.+++++|+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++..- ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4889999999974 4699999999999999999999999999999999999999999999999988443 3479
Q ss_pred EEEccCccccc-hhHHHHHhcCCCCCC--HHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhcc
Q 000909 434 GLVSQEHALFG-TSIKDNIMFGKLDAT--MDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIK 510 (1230)
Q Consensus 434 ~~v~Q~~~l~~-~ti~~Ni~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 510 (1230)
+||+|++.||+ -||+||+.+|..... .++- .+.+.+.++.. |+...-+..+.+||||||||+||||||+.
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~-----~~~a~~~L~~V--gL~~~~~~~P~qLSGGMrQRVaiARAL~~ 147 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEA-----RERAKELLELV--GLAGFEDKYPHQLSGGMRQRVAIARALAT 147 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhH-----HHHHHHHHHHc--CCcchhhcCccccChHHHHHHHHHHHHhc
Confidence 99999999997 599999999865321 2211 11334555555 77777788889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCC
Q 000909 511 NPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNG 567 (1230)
Q Consensus 511 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G 567 (1230)
+|+||+||||++|||+.|+..+++.+.++. .++|+++|||++++.-. +|||++|.++
T Consensus 148 ~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 148 RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 999999999999999999999999998753 47999999999999765 9999999984
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=388.99 Aligned_cols=216 Identities=33% Similarity=0.568 Sum_probs=196.1
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecC-CCChHHHhhc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVR-ELDVHWYRKH 1069 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~-~i~~~~lR~~ 1069 (1230)
.|+++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|++.|++|.|.+||.+++ +.+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48999999999865 57999999999999999999999999999999999999999999999999998 4889999999
Q ss_pred ceEEcccc--cCCcccHHHHhccCCC--CCCHHH----HHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHH
Q 000909 1070 TALVSQEP--VIYAGNIRDNIVFGKL--DASENE----VVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAI 1141 (1230)
Q Consensus 1070 i~~VpQdp--~Lf~gTIreNl~~g~~--~~sd~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlal 1141 (1230)
+|+|+|+| ++|..||.+.++||.. ..+.++ +.++++.+++.++.+ ....+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~-----------r~p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLD-----------RPPFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhcc-----------CCccccCCcceeeHHh
Confidence 99999999 8999999999999854 344444 667788888877633 3456899999999999
Q ss_pred HHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHhhc
Q 000909 1142 ARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1142 ARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1218 (1230)
|.+|..+|++||||||||+||+...+.+.+.++++.+ ++|+|+|||+++.+.. |||++||++|+++.+|+|+++.++
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999999999999999999864 4799999999999988 899999999999999999999876
Q ss_pred c
Q 000909 1219 R 1219 (1230)
Q Consensus 1219 ~ 1219 (1230)
.
T Consensus 230 ~ 230 (235)
T COG1122 230 A 230 (235)
T ss_pred h
Confidence 4
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=413.57 Aligned_cols=216 Identities=31% Similarity=0.467 Sum_probs=189.0
Q ss_pred EEEEEEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHH---Hh
Q 000909 992 IEMRRVDFAYPSRP-DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW---YR 1067 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---lR 1067 (1230)
|+++||+++|+... ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+.+++... +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996321 246999999999999999999999999999999999999999999999999999887654 57
Q ss_pred hcceEEcccccCCc-ccHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHH
Q 000909 1068 KHTALVSQEPVIYA-GNIRDNIVFGKL--DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIA 1140 (1230)
Q Consensus 1068 ~~i~~VpQdp~Lf~-gTIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 1140 (1230)
++|+||||++.+|. .|++||+.++.. ..+ ++++.++++.+++.++.++ .+..||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~-----------~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDS-----------YPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence 89999999999995 799999987521 222 2345677777777665443 34579999999999
Q ss_pred HHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHhh
Q 000909 1141 IARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTH 1217 (1230)
Q Consensus 1141 lARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~ 1217 (1230)
|||||+.+|+|||||||||+||+++...+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|+|+|.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998753 7999999999999965 89999999999999999999986
Q ss_pred c
Q 000909 1218 M 1218 (1230)
Q Consensus 1218 ~ 1218 (1230)
.
T Consensus 231 ~ 231 (343)
T TIGR02314 231 H 231 (343)
T ss_pred C
Confidence 5
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-44 Score=390.27 Aligned_cols=220 Identities=38% Similarity=0.703 Sum_probs=203.1
Q ss_pred CcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhc
Q 000909 990 GKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKH 1069 (1230)
Q Consensus 990 g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~ 1069 (1230)
|+|+++|++++|+.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 468999999999642 2469999999999999999999999999999999999999999999999999988888788899
Q ss_pred ceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccCC
Q 000909 1070 TALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNP 1149 (1230)
Q Consensus 1070 i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p 1149 (1230)
++|+||+|.+|..|++||+.++.+..+.+++.++++..++.+.+..+|.|++|.+.....+||||||||++||||++.+|
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998765444566788889999999999999999999998888999999999999999999999
Q ss_pred CEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEEEEec
Q 000909 1150 TILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERG 1210 (1230)
Q Consensus 1150 ~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~G 1210 (1230)
++|||||||++||+++...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999986668999999999998888999999999998765
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-45 Score=357.27 Aligned_cols=208 Identities=30% Similarity=0.456 Sum_probs=187.9
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCCh---HHHhh
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDV---HWYRK 1068 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~---~~lR~ 1068 (1230)
|+|+||+.+|+.. +++|+||||+|++||.+=++|||||||||++++|++...|++|+|.++|.|++.++- ..||+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 8999999999854 569999999999999999999999999999999999999999999999999988864 46899
Q ss_pred cceEEcccccCCc-ccHHHHhccCCC--CC----CHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHH
Q 000909 1069 HTALVSQEPVIYA-GNIRDNIVFGKL--DA----SENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAI 1141 (1230)
Q Consensus 1069 ~i~~VpQdp~Lf~-gTIreNl~~g~~--~~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlal 1141 (1230)
+||+|+||.-|.. -|+.||++|.-. +. -.+++.++|+.+|+.+....||. .|||||+||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHH
Confidence 9999999998775 599999997532 22 24567889999999999988874 699999999999
Q ss_pred HHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhc-CEEEEEeCcEEEEecCH
Q 000909 1142 ARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTY 1212 (1230)
Q Consensus 1142 ARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~-D~I~vl~~G~Ive~Gt~ 1212 (1230)
|||+..+|++||-||||-+||+++...|.+.+++.- .|.||++.||+.+.+..+ -|++.+++|+++....+
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 999999999999999999999999999999999864 599999999999999988 78999999999987654
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-44 Score=391.04 Aligned_cols=226 Identities=50% Similarity=0.842 Sum_probs=208.7
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhh
Q 000909 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRRE 432 (1230)
Q Consensus 353 ~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~ 432 (1230)
++|+++|++++|++ .+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.
T Consensus 1 ~~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 36899999999963 2359999999999999999999999999999999999999999999999999988888888899
Q ss_pred eEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCC
Q 000909 433 MGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNP 512 (1230)
Q Consensus 433 i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 512 (1230)
++|++|++.+|++|++||+.++.+....+++.++++..++.++++.+|.|+++.++....+||||||||++|||||+.+|
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876555556677777788888999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEeCCeEEEecChhHHHh
Q 000909 513 VILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 513 ~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
+++||||||++||+.+.+.+.+.+.+..+++|+|++||+++.+..||+|++|++|++++.|+.+++.+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999999999998777899999999999998899999999999999999888765
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-44 Score=392.73 Aligned_cols=233 Identities=55% Similarity=0.836 Sum_probs=211.7
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheE
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
|+++|++++|++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 478999999963 235999999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCCCE
Q 000909 435 LVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVI 514 (1230)
Q Consensus 435 ~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~i 514 (1230)
|++|++.+|+.|++||+.++.+..+.+++.+.++..++.+.+..+|.|+++.++.++.+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655555666677777788888999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEeCCeEEEecChhHHHhhcCcHHHHHH
Q 000909 515 LLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMA 590 (1230)
Q Consensus 515 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 590 (1230)
+||||||++||+++...+.+.|.+..+|+|+|++||+++.+..||++++|++|++++.|+.+++.+. ...|+..+
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~~ 233 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMW 233 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHHH
Confidence 9999999999999999999999887668999999999999988999999999999999999998774 55555443
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=410.32 Aligned_cols=225 Identities=32% Similarity=0.498 Sum_probs=191.1
Q ss_pred EEEEEEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHH---Hh
Q 000909 355 IEFEHVKFSYPSRP-DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKW---VR 430 (1230)
Q Consensus 355 i~~~~v~~~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~---~r 430 (1230)
|+++||+++|+..+ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++..++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996322 246999999999999999999999999999999999999999999999999998876544 57
Q ss_pred hheEEEccCccccc-hhHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHH
Q 000909 431 REMGLVSQEHALFG-TSIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARA 507 (1230)
Q Consensus 431 ~~i~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 507 (1230)
++|||+||++.+|+ .|++||+.++.. ..+.++..+ .+.+.++.+ |+.......+.+||||||||++||||
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~v~e~l~~v--gL~~~~~~~~~~LSgGqkQRV~IARA 154 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKR-----KVTELLALV--GLGDKHDSYPSNLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 89999999999996 699999998532 122222211 223344444 67666778888999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhhcCc
Q 000909 508 IIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRIDG 584 (1230)
Q Consensus 508 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 584 (1230)
|+.+|++||||||||+||+.+...+.+.|++.. .|.|+|+|||+++.+.. ||+|++|++|++++.|++++++..+..
T Consensus 155 L~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p~~ 234 (343)
T TIGR02314 155 LASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKT 234 (343)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCc
Confidence 999999999999999999999999999999864 38999999999999966 999999999999999999999865443
Q ss_pred HH
Q 000909 585 HY 586 (1230)
Q Consensus 585 ~~ 586 (1230)
.+
T Consensus 235 ~~ 236 (343)
T TIGR02314 235 PL 236 (343)
T ss_pred HH
Confidence 33
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=363.68 Aligned_cols=475 Identities=18% Similarity=0.208 Sum_probs=357.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccCChhHHHHHHhhhHHHHHHHHHHHHH
Q 000909 707 YSLIFCSLSLISLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVS 786 (1230)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~~fd~~~~~~G~l~~r~s~D~~~i~~~~~~~l~ 786 (1230)
+...++++.++..+...+.......++++...++|.++.++++..|+.-++ +-.+++++.++++|+..+. +-...++
T Consensus 50 ~l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerie--r~~~~rlla~L~~Dvr~IS-f~~s~lp 126 (546)
T COG4615 50 VLPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIE--RLGSARLLAGLTSDVRNIS-FAFSRLP 126 (546)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH--Hhcccchhhhhccccccee-ehHhhhH
Confidence 344455555566666777778888999999999999999999999999997 6789999999999999998 4455677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhchHHHHHHchHH
Q 000909 787 LLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAG 866 (1230)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~a~~~~~ 866 (1230)
.+.++....+++.....++++++.++.++.+.+.++..++......+......+...+.....+.-++|.+..+....-.
T Consensus 127 ~~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~ 206 (546)
T COG4615 127 ELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERA 206 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHH
Confidence 78888888888999999999988887777777776666665555555555666677778888899999999988765322
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH
Q 000909 867 --KVLQIFDEAQEEPRKQARKKSWLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAG 944 (1230)
Q Consensus 867 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~ 944 (1230)
.+.+.|....+...+..............+++.+.+....+.+|+..... .-+.....+..+.+.+...|+.+.+
T Consensus 207 ~~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~---w~st~~a~tivlvlLflr~pL~s~v 283 (546)
T COG4615 207 EYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLG---WASTNVAATIVLVLLFLRTPLLSAV 283 (546)
T ss_pred HHHHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchhhHHHHHHHHHHHHhhHHHHHH
Confidence 22233332222222211111111122334445555555556666554432 2233334445566677788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCCcccccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEE
Q 000909 945 SMTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVG 1024 (1230)
Q Consensus 945 ~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~va 1024 (1230)
...+.+.++.+|.+++.++-..++..... .....+.| ..||++||.|+|++. .--+.-||++|++||.|=
T Consensus 284 gilP~l~~AqvA~~kiakle~~~~~a~~~-----~~q~~p~~---~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvF 353 (546)
T COG4615 284 GILPTLLTAQVAFNKIAKLELAPYKADFP-----RPQAFPDW---KTLELRNVRFAYQDN--AFHVGPINLTIKRGELVF 353 (546)
T ss_pred hhhhHHHHHHHHHHHHHHhhcCCccccCC-----CCCcCCcc---cceeeeeeeeccCcc--cceecceeeEEecCcEEE
Confidence 99999999999999999887633322111 11111112 359999999999743 234778999999999999
Q ss_pred EEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcceEEcccccCCcccHHHHhccCCCC-CCHHHHHHH
Q 000909 1025 LVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLD-ASENEVVEA 1103 (1230)
Q Consensus 1025 IVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~~-~sd~ei~~a 1103 (1230)
|+|.|||||||++++|.|+|.|++|+|++||.+++.=+++++|+-++-|+-|.+||+.++ |..+ ++.+.+...
T Consensus 354 liG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~ 427 (546)
T COG4615 354 LIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKW 427 (546)
T ss_pred EECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998764 3223 778877777
Q ss_pred HHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCe
Q 000909 1104 ARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRT 1181 (1230)
Q Consensus 1104 l~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~T 1181 (1230)
+++..+..... +.+|-=+ ...||-|||.|+|+--|++.+.||++|||=.+--||.=.+...+.+--.. +|||
T Consensus 428 LqrLel~~kts-l~d~~fs-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKT 501 (546)
T COG4615 428 LQRLELAHKTS-LNDGRFS-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKT 501 (546)
T ss_pred HHHHHHhhhhc-ccCCccc-----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCe
Confidence 76665544332 2222111 24699999999999999999999999999999999999999888765433 5999
Q ss_pred EEEEccCchhhhhcCEEEEEeCcEEEEe
Q 000909 1182 TIVVAHRLNTIKKLDSIALVADGRVVER 1209 (1230)
Q Consensus 1182 vI~IaHrl~ti~~~D~I~vl~~G~Ive~ 1209 (1230)
++.|||+-.-...+||++.|++|+++|.
T Consensus 502 I~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 502 IFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred EEEEecCchhhhhHHHHHHHhcCceeec
Confidence 9999999999999999999999999986
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=372.58 Aligned_cols=224 Identities=29% Similarity=0.447 Sum_probs=186.3
Q ss_pred cEEEEEEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCC-ChHHHhh
Q 000909 991 KIEMRRVDFAYPSRP-DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVREL-DVHWYRK 1068 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i-~~~~lR~ 1068 (1230)
.++++|+++.|+.+. -.++|+||||+|.+||++||||+||||||||.++|.|+.+|++|+|.+||.+.... ..+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 388999999997432 11499999999999999999999999999999999999999999999999776553 3446788
Q ss_pred cceEEcccccC-Cc--ccHHHHhc----cCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHH
Q 000909 1069 HTALVSQEPVI-YA--GNIRDNIV----FGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAI 1141 (1230)
Q Consensus 1069 ~i~~VpQdp~L-f~--gTIreNl~----~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlal 1141 (1230)
.+.+|+|||.- ++ -||++-|. ....+...++++++++.+|+.+-.. ...+..||||||||+||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l----------~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFL----------DRRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHH----------hcCchhcChhHHHHHHH
Confidence 99999999952 22 36666654 1111234556899999999865332 23345799999999999
Q ss_pred HHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCC--eEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHhhc
Q 000909 1142 ARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGR--TTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1142 ARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~--TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1218 (1230)
||||.-+|++||||||||+||.-.++.|++.+.+..+++ |.|+|||+++.+.. ||||+||++|+++|.++-.++...
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 999999999999999999999999999999999987654 99999999999975 799999999999999999999887
Q ss_pred -ccccHH
Q 000909 1219 -RGAFFN 1224 (1230)
Q Consensus 1219 -~g~y~~ 1224 (1230)
...|-+
T Consensus 233 ~~h~ytr 239 (252)
T COG1124 233 PSHPYTR 239 (252)
T ss_pred CccHHHH
Confidence 444544
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-44 Score=392.66 Aligned_cols=230 Identities=56% Similarity=0.885 Sum_probs=209.2
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheE
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
|+++|++++|++. ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999743 235999999999999999999999999999999999999999999999999998887778889999
Q ss_pred EEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCCCE
Q 000909 435 LVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVI 514 (1230)
Q Consensus 435 ~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~i 514 (1230)
|++|++.+|+.|++||+.++......+++.+.++..++.++++.+|.|+++..+..+.+||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987654455566667777788899999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEeCCeEEEecChhHHHhhcCcHH
Q 000909 515 LLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHY 586 (1230)
Q Consensus 515 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 586 (1230)
+||||||++||+.+...+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+.+++... .+.|
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~ 230 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVY 230 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc-Ccch
Confidence 9999999999999999999999988778999999999999988999999999999999999998764 4433
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-43 Score=430.91 Aligned_cols=199 Identities=27% Similarity=0.440 Sum_probs=167.4
Q ss_pred CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC--CCCeEEECCeecCCCChHHHhhcceEEcccc-cCCcc
Q 000909 1006 DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV--EQGSVRVDGMDVRELDVHWYRKHTALVSQEP-VIYAG 1082 (1230)
Q Consensus 1006 ~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p--~~G~I~idG~di~~i~~~~lR~~i~~VpQdp-~Lf~g 1082 (1230)
.+..|+|||=-++||--+|++|.||||||||++.|.+=-.- .+|+|+|||.+..+ +..++++|||.|++ ++=.-
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence 34589999999999999999999999999999999986432 47999999999865 78999999999877 56566
Q ss_pred cHHHHhccCC----C-CCCHHH----HHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccCC-CEE
Q 000909 1083 NIRDNIVFGK----L-DASENE----VVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNP-TIL 1152 (1230)
Q Consensus 1083 TIreNl~~g~----~-~~sd~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p-~IL 1152 (1230)
||||-|.|.. | +.+++| ++++.+..++.++- |..||..|..||..||.||.||--|+.|| .||
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~il 952 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSIL 952 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCceeE
Confidence 9999998742 2 344433 45566666665543 45688888999999999999999999999 899
Q ss_pred EeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchh--hhhcCEEEEEe-CcEEEEecCHhH
Q 000909 1153 LLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNT--IKKLDSIALVA-DGRVVERGTYAQ 1214 (1230)
Q Consensus 1153 lLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~t--i~~~D~I~vl~-~G~Ive~Gt~~e 1214 (1230)
.||||||+||+++...|.+.+++.. .|+||++.=|.++. .+..|+++.|+ .|+.|-.|+..+
T Consensus 953 FLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 953 FLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 9999999999999999999999975 69999999999986 35679999997 589998887643
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=391.98 Aligned_cols=227 Identities=63% Similarity=0.979 Sum_probs=206.4
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheE
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
|+++|+++.|++..++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999997533346999999999999999999999999999999999999999999999999998777777788999
Q ss_pred EEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCCCE
Q 000909 435 LVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVI 514 (1230)
Q Consensus 435 ~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~i 514 (1230)
|++|++.+|+.|++||+.++......+++.+.++..++.+++..+|.|+++..+....+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999989999999987554445556666666778888999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEeCCeEEEecChhHHHhh
Q 000909 515 LLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 515 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 581 (1230)
+||||||++||+.+.+.+.+.|++..+|+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 9999999999999999999999887678999999999999988999999999999999999888764
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-44 Score=369.09 Aligned_cols=229 Identities=31% Similarity=0.437 Sum_probs=184.8
Q ss_pred cEEEEEEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCC-CHHHHhh
Q 000909 354 EIEFEHVKFSYPSRP-DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRL-QLKWVRR 431 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~-~~~~~r~ 431 (1230)
-++++|+++.|+.+. ..++|+||||+|.+||++||||+||||||||.++|+|+.+|++|+|.++|.++... ..+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 488999999997432 12499999999999999999999999999999999999999999999999877654 3446788
Q ss_pred heEEEccCcc--ccc-hhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCccc-chhcCCCCCCChhHHHHHHHHHH
Q 000909 432 EMGLVSQEHA--LFG-TSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYE-TKVGERGALLSGGQKQRIAIARA 507 (1230)
Q Consensus 432 ~i~~v~Q~~~--l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri~iARa 507 (1230)
.|-+|||||. |-+ -||++-|.=+.......+..+. +.+.++.+ |+. ....+.+.+||||||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~-----i~~~L~~V--gL~~~~l~R~P~eLSGGQ~QRiaIARA 155 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQR-----IAELLDQV--GLPPSFLDRRPHELSGGQRQRIAIARA 155 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHH-----HHHHHHHc--CCCHHHHhcCchhcChhHHHHHHHHHH
Confidence 9999999996 333 2777776532211111111111 22333333 554 44677889999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhhcCc
Q 000909 508 IIKNPVILLLDEATSALDSESETLVQNALDQASL--GRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRIDG 584 (1230)
Q Consensus 508 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 584 (1230)
|.-+|++||||||||+||+...+.|.+.+.++.+ +-|.|+|||+++.+.+ ||||+||++|+++|.++.+++......
T Consensus 156 L~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~~~h 235 (252)
T COG1124 156 LIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSH 235 (252)
T ss_pred hccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcCCcc
Confidence 9999999999999999999999999999988764 5699999999999988 999999999999999999999876455
Q ss_pred HHHHH
Q 000909 585 HYAKM 589 (1230)
Q Consensus 585 ~~~~~ 589 (1230)
.|.+.
T Consensus 236 ~ytr~ 240 (252)
T COG1124 236 PYTRE 240 (252)
T ss_pred HHHHH
Confidence 56543
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-44 Score=365.75 Aligned_cols=221 Identities=30% Similarity=0.489 Sum_probs=191.4
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChH---HHh
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVH---WYR 1067 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~lR 1067 (1230)
.|++++|+++|.+ +.||+||||+|++||.+||+|+||||||||++++.|+..|++|+|+++|.|+.+++-+ .+|
T Consensus 8 ~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 8 LIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred eEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 5999999999963 4699999999999999999999999999999999999999999999999999999864 569
Q ss_pred hcceEEcccccCCcc-cHHHHhccCCC---CCCHHHHHH----HHHHhchHHHHHhccccccccccCCCCCCChhHHHHH
Q 000909 1068 KHTALVSQEPVIYAG-NIRDNIVFGKL---DASENEVVE----AARAANAHEFISSLKDGYETECGERGVQLSGGQRQRI 1139 (1230)
Q Consensus 1068 ~~i~~VpQdp~Lf~g-TIreNl~~g~~---~~sd~ei~~----al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 1139 (1230)
+++|+++|.-.||+. ||+||+.|.-. +.+++++.+ .++.+|+..-+.. .-++.||||.+.|.
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~----------~~PsELSGGM~KRv 154 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAAD----------LYPSELSGGMRKRV 154 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhh----------hCchhhcchHHHHH
Confidence 999999999999986 99999998532 344554443 3555665544221 23467999999999
Q ss_pred HHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhc-CEEEEEeCcEEEEecCHhHHh
Q 000909 1140 AIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQLT 1216 (1230)
Q Consensus 1140 alARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~-D~I~vl~~G~Ive~Gt~~eLl 1216 (1230)
|||||+.-+|+||++|||||+|||-+...+-+.|+++.. |.|+++|||+++++..+ |||+++.+|+|+..|+++|+.
T Consensus 155 aLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~ 234 (263)
T COG1127 155 ALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELL 234 (263)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999888653 88999999999999765 999999999999999999999
Q ss_pred hcccccHH
Q 000909 1217 HMRGAFFN 1224 (1230)
Q Consensus 1217 ~~~g~y~~ 1224 (1230)
+.+..|-+
T Consensus 235 ~sd~P~v~ 242 (263)
T COG1127 235 ASDDPWVR 242 (263)
T ss_pred hCCCHHHH
Confidence 98665443
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-44 Score=383.89 Aligned_cols=219 Identities=35% Similarity=0.571 Sum_probs=193.4
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecC-CCCHHHHhhh
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIR-RLQLKWVRRE 432 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~-~~~~~~~r~~ 432 (1230)
-++++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||++++.|++.|++|+|.++|.++. +.+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 47899999999854 57999999999999999999999999999999999999999999999999998 4788899999
Q ss_pred eEEEccCc--cccchhHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHh
Q 000909 433 MGLVSQEH--ALFGTSIKDNIMFGKLDA--TMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAI 508 (1230)
Q Consensus 433 i~~v~Q~~--~l~~~ti~~Ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 508 (1230)
+|||+|+| .+|..||.|.++||..+. +.+++.+..+ +.++.. |+.....+...+||||||||+|||.+|
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~-----~~l~~v--gl~~~~~r~p~~LSGGqkqRvaIA~vL 153 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVA-----EALELV--GLEELLDRPPFNLSGGQKQRVAIAGVL 153 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHH-----HHHHHc--CchhhccCCccccCCcceeeHHhhHHH
Confidence 99999999 789999999999996542 3333333222 223333 666667788899999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhh
Q 000909 509 IKNPVILLLDEATSALDSESETLVQNALDQASL--GRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 509 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 581 (1230)
+.+|+++|||||||+||+...+.+.+.++++.+ |+|+|++||+++.+.. ||++++|++|+++.+|+++++.++
T Consensus 154 a~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 154 AMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred HcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 999999999999999999999999999998753 5899999999999977 999999999999999999998874
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-44 Score=348.50 Aligned_cols=212 Identities=29% Similarity=0.494 Sum_probs=189.8
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcce
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1071 (1230)
|.+++|.|+|...+ =.++++|++||+|||+||||||||||++++.||..|.+|+|.|+|+|...-++. ++-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 56889999996432 357899999999999999999999999999999999999999999999887764 57799
Q ss_pred EEcccccCCcc-cHHHHhccCC-CC-----CCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHH
Q 000909 1072 LVSQEPVIYAG-NIRDNIVFGK-LD-----ASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARA 1144 (1230)
Q Consensus 1072 ~VpQdp~Lf~g-TIreNl~~g~-~~-----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARA 1144 (1230)
+++||..||.- ||++|+.+|. |. ...+.+..++.++|+.+|..+||. .||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 99999999975 9999999984 32 234678899999999999999983 699999999999999
Q ss_pred HccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHhhcccc
Q 000909 1145 IIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTHMRGA 1221 (1230)
Q Consensus 1145 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~~g~ 1221 (1230)
|+|+.|||+||||.|+|||.-...+...+.+.. ++.|+++|||.++-++. +|+++++++|||++.|+-+++++.++.
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~~ 223 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKAS 223 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCCh
Confidence 999999999999999999999999999998875 47899999999998865 699999999999999999999987543
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-44 Score=396.42 Aligned_cols=213 Identities=33% Similarity=0.529 Sum_probs=192.8
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1070 (1230)
.|+++||+.+|.+. .+|+|+||+|+.||.++|+|||||||||++++|+||.+|++|+|.|||.|+.++++++ +.|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999632 2899999999999999999999999999999999999999999999999999999875 899
Q ss_pred eEEcccccCCcc-cHHHHhccCCCC------CCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHH
Q 000909 1071 ALVSQEPVIYAG-NIRDNIVFGKLD------ASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIAR 1143 (1230)
Q Consensus 1071 ~~VpQdp~Lf~g-TIreNl~~g~~~------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalAR 1143 (1230)
++|+|++.||.- ||+|||+|+... ..++++.++++..++.+.+++.| ..||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHH
Confidence 999999999975 999999998431 23567888999999988877655 579999999999999
Q ss_pred HHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhHHhhcc
Q 000909 1144 AIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQLTHMR 1219 (1230)
Q Consensus 1144 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eLl~~~ 1219 (1230)
||+++|++++||||.|+||++....+...|.++.+ +.|+|.|||+...+. .+|||+||++|+|.+.|+|.|+.+++
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 99999999999999999999999999999988653 689999999988765 57999999999999999999999873
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-44 Score=389.21 Aligned_cols=219 Identities=49% Similarity=0.811 Sum_probs=200.2
Q ss_pred ccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHh
Q 000909 988 ISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYR 1067 (1230)
Q Consensus 988 ~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR 1067 (1230)
..|.|+++|++++|+++.+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45789999999999753234699999999999999999999999999999999999999999999999999888888888
Q ss_pred hcceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHcc
Q 000909 1068 KHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIR 1147 (1230)
Q Consensus 1068 ~~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~ 1147 (1230)
++++|+||+|.+|++|++||+.++......+++++..+..++.++++.+|.|+++.+.....+||||||||++||||+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999987654444556666667778899999999999998999999999999999999999999
Q ss_pred CCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEE
Q 000909 1148 NPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRV 1206 (1230)
Q Consensus 1148 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~I 1206 (1230)
+|++|||||||++||+++.+.+.+.+++..+++|+|+|||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999998778899999999999988999999999975
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-44 Score=393.00 Aligned_cols=218 Identities=30% Similarity=0.482 Sum_probs=186.7
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCCh---HHHhh
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDV---HWYRK 1068 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~---~~lR~ 1068 (1230)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 478999999963 359999999999999999999999999999999999999999999999999988764 56789
Q ss_pred cceEEcccccCCcc-cHHHHhccCCC---CCCHH----HHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHH
Q 000909 1069 HTALVSQEPVIYAG-NIRDNIVFGKL---DASEN----EVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIA 1140 (1230)
Q Consensus 1069 ~i~~VpQdp~Lf~g-TIreNl~~g~~---~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 1140 (1230)
+++||||++.+|.+ |++||+.++.. ..+.+ ++.++++..++.++. .....+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-----------DLYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHH
Confidence 99999999999986 99999986521 22322 344455555554432 2334579999999999
Q ss_pred HHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHhh
Q 000909 1141 IARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTH 1217 (1230)
Q Consensus 1141 lARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~ 1217 (1230)
|||||+++|+||||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++++
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999999998753 7899999999998875 89999999999999999999987
Q ss_pred cccccH
Q 000909 1218 MRGAFF 1223 (1230)
Q Consensus 1218 ~~g~y~ 1223 (1230)
....|.
T Consensus 227 ~~~~~~ 232 (235)
T cd03261 227 SDDPLV 232 (235)
T ss_pred CCChhh
Confidence 655454
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=385.27 Aligned_cols=220 Identities=35% Similarity=0.575 Sum_probs=203.8
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhh
Q 000909 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRRE 432 (1230)
Q Consensus 353 ~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~ 432 (1230)
+.|+++|++++|+.. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 468999999999743 3469999999999999999999999999999999999999999999999999988888888999
Q ss_pred eEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCC
Q 000909 433 MGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNP 512 (1230)
Q Consensus 433 i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 512 (1230)
++|++|++.+++.|++||+.+... ...+++.++++..++.+++..+|.|+++..++.+.+||||||||++||||++.+|
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEEECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999986543 4566778888888899999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEeCCeEEEecC
Q 000909 513 VILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGT 574 (1230)
Q Consensus 513 ~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~ 574 (1230)
+++||||||++||+.+++.+.+.+++..+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999998777899999999999998899999999999998875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=398.34 Aligned_cols=218 Identities=30% Similarity=0.466 Sum_probs=192.0
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1070 (1230)
.|+++||+++|+.....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 38999999999642224599999999999999999999999999999999999999999999999999988888899999
Q ss_pred eEEcccc--cCCcccHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHH
Q 000909 1071 ALVSQEP--VIYAGNIRDNIVFGKL--DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIA 1142 (1230)
Q Consensus 1071 ~~VpQdp--~Lf~gTIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalA 1142 (1230)
+||||+| .++..||+|||.++.. +.+ ++.+.++++..++.++.+.. ..+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKERE-----------PARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 9999998 4667899999987632 222 24567777888877665443 357999999999999
Q ss_pred HHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCcEEEEecCHhHHhhcc
Q 000909 1143 RAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMR 1219 (1230)
Q Consensus 1143 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~ 1219 (1230)
|||+++|++|||||||++||+.+.+.+.+.|++..+ |+|+|+|||+++.+..||+|++|++|++++.|+++++.+..
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRG 231 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcCh
Confidence 999999999999999999999999999999998753 89999999999999889999999999999999999987653
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=362.45 Aligned_cols=215 Identities=30% Similarity=0.511 Sum_probs=191.5
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCC---hHHHh
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELD---VHWYR 1067 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~---~~~lR 1067 (1230)
.|+++||+.+||+ +..+|+||||+|++||.|||+||||||||||+++|.|+.+|++|+|.++|.++...+ ++.+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999984 457999999999999999999999999999999999999999999999999999887 67788
Q ss_pred hcceEEcccccCCcc-cHHHHhccCCCC-----------CCH---HHHHHHHHHhchHHHHHhccccccccccCCCCCCC
Q 000909 1068 KHTALVSQEPVIYAG-NIRDNIVFGKLD-----------ASE---NEVVEAARAANAHEFISSLKDGYETECGERGVQLS 1132 (1230)
Q Consensus 1068 ~~i~~VpQdp~Lf~g-TIreNl~~g~~~-----------~sd---~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LS 1132 (1230)
+++|+|+|+|.|-.. |+-+|+..|+.+ .+. ....+||+++|+.++.- .+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhccCC
Confidence 999999999998764 999999877532 233 34667888888877643 3456899
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCcEEEEe
Q 000909 1133 GGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKK-LDSIALVADGRVVER 1209 (1230)
Q Consensus 1133 gGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~ 1209 (1230)
|||+||++|||||..+|+|+|-|||+|+|||++.+.|.+.|++.. .|.|+|+.-|.++..++ ||||+=|++|+|+-.
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999999864 58999999999999976 599999999999999
Q ss_pred cCHhHHhhc
Q 000909 1210 GTYAQLTHM 1218 (1230)
Q Consensus 1210 Gt~~eLl~~ 1218 (1230)
|++.||-+.
T Consensus 230 g~~~el~~~ 238 (258)
T COG3638 230 GPASELTDE 238 (258)
T ss_pred CChhhhhHH
Confidence 999997653
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=368.96 Aligned_cols=207 Identities=31% Similarity=0.461 Sum_probs=174.9
Q ss_pred EEEEEEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChH---HH-
Q 000909 992 IEMRRVDFAYPSRP-DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVH---WY- 1066 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~l- 1066 (1230)
++++||+..|.... ..++|+++||+|++||.|||+||||||||||+++|.++..|++|.|.++|.|+..++.+ .+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67899999996432 23699999999999999999999999999999999999999999999999999999853 34
Q ss_pred hhcceEEcccccCCcc-cHHHHhccC----CCCC--CHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHH
Q 000909 1067 RKHTALVSQEPVIYAG-NIRDNIVFG----KLDA--SENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRI 1139 (1230)
Q Consensus 1067 R~~i~~VpQdp~Lf~g-TIreNl~~g----~~~~--sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 1139 (1230)
|++||+|+|+..|++. |++||+.++ .... ..+...+.++..|+.+... ...+.+||||||||+
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHHH
Confidence 4679999999998875 999999842 1111 1334455555556655433 133568999999999
Q ss_pred HHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCcEEEE
Q 000909 1140 AIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKKLDSIALVADGRVVE 1208 (1230)
Q Consensus 1140 alARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive 1208 (1230)
||||||+.+|+|++.||||.+||.+|.+.|.+.+++.. .|+|+|+|||+......|||++.|.||++.+
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 99999999999999999999999999999999999874 3789999999999999999999999999543
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-44 Score=389.71 Aligned_cols=212 Identities=35% Similarity=0.585 Sum_probs=184.0
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccc-----cCCCCeEEECCeecCCCC--hH
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFY-----DVEQGSVRVDGMDVRELD--VH 1064 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~-----~p~~G~I~idG~di~~i~--~~ 1064 (1230)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|++ +|++|+|.+||.++.+.+ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999964 35999999999999999999999999999999999999 999999999999998876 66
Q ss_pred HHhhcceEEcccccCCcccHHHHhccCCC--CC-----CHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHH
Q 000909 1065 WYRKHTALVSQEPVIYAGNIRDNIVFGKL--DA-----SENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQ 1137 (1230)
Q Consensus 1065 ~lR~~i~~VpQdp~Lf~gTIreNl~~g~~--~~-----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 1137 (1230)
.+|++++|+||++.+|..|++||+.++.. .. .++++.++++..++.+...+.++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 78899999999999998899999986521 11 12445666777776554433211 4689999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHH
Q 000909 1138 RIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQL 1215 (1230)
Q Consensus 1138 rlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1215 (1230)
|++||||++++|++|||||||++||+++.+.+.+.|++..+.+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 999999999999999999999999999999999999988655899999999998864 899999999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=375.77 Aligned_cols=210 Identities=27% Similarity=0.494 Sum_probs=185.9
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1070 (1230)
.|+++|++|+|.++ +||+||||+|++||.+||+||||||||||+++++|+..|++|+|.++|.++++... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 59999999999632 59999999999999999999999999999999999999999999999998876543 5789
Q ss_pred eEEcccc---cCCcccHHHHhccCCCC----------CCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHH
Q 000909 1071 ALVSQEP---VIYAGNIRDNIVFGKLD----------ASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQ 1137 (1230)
Q Consensus 1071 ~~VpQdp---~Lf~gTIreNl~~g~~~----------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 1137 (1230)
|||||.. .-|.-||+|=+.+|... .+.+++.+||+.+++.++.. -++| .|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~-------r~i~----~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-------RQIG----ELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC-------Cccc----ccCcHHHH
Confidence 9999965 35788999999887432 12478999999999998854 3454 59999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHH
Q 000909 1138 RIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM-GRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQL 1215 (1230)
Q Consensus 1138 rlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1215 (1230)
|+.|||||+.+|++|+|||||+++|+.++..+.+.|.++.+ |||||+|+|+++.+.. +|+|+.|+ ++++..|++++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 99999999999999999999999999999999999999875 9999999999999976 69999995 678899999998
Q ss_pred hhc
Q 000909 1216 THM 1218 (1230)
Q Consensus 1216 l~~ 1218 (1230)
+..
T Consensus 226 ~~~ 228 (254)
T COG1121 226 LTE 228 (254)
T ss_pred cCH
Confidence 764
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=375.70 Aligned_cols=209 Identities=31% Similarity=0.499 Sum_probs=179.2
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhhe
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREM 433 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i 433 (1230)
.|+++|++++|.++ ++|+||||++++|++++|+||||||||||+|+|+|+.+|++|+|.++|.+++.... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 58999999999742 49999999999999999999999999999999999999999999999988765432 4689
Q ss_pred EEEccCc---cccchhHHHHHhcCCCCC----------CHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHH
Q 000909 434 GLVSQEH---ALFGTSIKDNIMFGKLDA----------TMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQ 500 (1230)
Q Consensus 434 ~~v~Q~~---~l~~~ti~~Ni~~~~~~~----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 500 (1230)
|||||.. |-|+-||+|-+.+|.... +.+++.++++.++ +.....+.-.+|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vg-----------m~~~~~r~i~~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVG-----------MEDLRDRQIGELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcC-----------chhhhCCcccccCcHHHH
Confidence 9999965 568899999999885421 1244555555554 444455666789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHH
Q 000909 501 RIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDL 578 (1230)
Q Consensus 501 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 578 (1230)
|+.|||||+++|++|+|||||+++|+.++..+.+.|+++. +|+||++|||+++.+.. +|+|+.|+ ++++..|++++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 9999999999999999999999999999999999999875 49999999999999865 99999995 568889999998
Q ss_pred Hh
Q 000909 579 IN 580 (1230)
Q Consensus 579 ~~ 580 (1230)
.+
T Consensus 226 ~~ 227 (254)
T COG1121 226 LT 227 (254)
T ss_pred cC
Confidence 76
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-43 Score=378.13 Aligned_cols=206 Identities=33% Similarity=0.601 Sum_probs=184.6
Q ss_pred cccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHH
Q 000909 987 KISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWY 1066 (1230)
Q Consensus 987 ~~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~l 1066 (1230)
+..+.|+++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+
T Consensus 2 ~~~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 2 PEHGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 445789999999999742 2369999999999999999999999999999999999999999999999999998888889
Q ss_pred hhcceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHc
Q 000909 1067 RKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAII 1146 (1230)
Q Consensus 1067 R~~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll 1146 (1230)
|++++||||+|.+|++|+++|+.+.+ ..+++++.++++ +......|||||+||++||||++
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~-~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~ 141 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFD-EYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALL 141 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccC-CCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999997653 234444444433 23567789999999999999999
Q ss_pred cCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEEEEecCH
Q 000909 1147 RNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTY 1212 (1230)
Q Consensus 1147 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~ 1212 (1230)
++|++|||||||++||+++...+.+.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 142 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 142 KRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 999999999999999999999999999998778999999999999988999999999999998874
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-43 Score=380.88 Aligned_cols=220 Identities=40% Similarity=0.669 Sum_probs=199.7
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhh
Q 000909 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRRE 432 (1230)
Q Consensus 353 ~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~ 432 (1230)
++|+++|++++|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 358999999999642 2469999999999999999999999999999999999999999999999999987777777889
Q ss_pred eEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCC
Q 000909 433 MGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNP 512 (1230)
Q Consensus 433 i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 512 (1230)
++|++|++.+|..|++||+.++......+++.+.++..++.+.+...|.|++|.+.....+||||||||++||||++.+|
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999889999999875444455667777888888889999999999999899999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEeCCeEEEec
Q 000909 513 VILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIG 573 (1230)
Q Consensus 513 ~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 573 (1230)
+++||||||++||+.+...+.+.|++..+++|+|++||+++.+..||++++|++|++++.|
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999876568999999999988779999999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-43 Score=398.81 Aligned_cols=222 Identities=26% Similarity=0.431 Sum_probs=190.5
Q ss_pred ccEEEEEEEEECCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCC------
Q 000909 353 GEIEFEHVKFSYPSRP--DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRL------ 424 (1230)
Q Consensus 353 ~~i~~~~v~~~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~------ 424 (1230)
.-|+++|++|+|++.. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 3599999999997421 24699999999999999999999999999999999999999999999999998653
Q ss_pred ----------CHHHHhhheEEEccCc--cccchhHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCccc-chhcC
Q 000909 425 ----------QLKWVRREMGLVSQEH--ALFGTSIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYE-TKVGE 489 (1230)
Q Consensus 425 ----------~~~~~r~~i~~v~Q~~--~l~~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~ 489 (1230)
+...+|++|+||+|+| .+|+.|++|||.++.. ..+.++..+ .+.+.++.+ |++ ...++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK-----LAKFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHHc--CCChhHhcC
Confidence 3457889999999998 6899999999998742 122332211 223556666 775 56788
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEecCchhhh-ccCEEEEEeCC
Q 000909 490 RGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQA-SLGRTTLVVAHKLSTVR-NADLIAVVDNG 567 (1230)
Q Consensus 490 ~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~-~~~~t~i~itH~l~~~~-~~d~i~~l~~G 567 (1230)
.+.+||||||||++|||||+++|++|||||||++||+.+++.+.+.|.++ .+|+|+|+|||+++.+. .||+|++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 89999999999999999999999999999999999999999999999876 35899999999999875 59999999999
Q ss_pred eEEEecChhHHHhh
Q 000909 568 CLVEIGTHNDLINR 581 (1230)
Q Consensus 568 ~i~~~g~~~~l~~~ 581 (1230)
++++.|+++++...
T Consensus 253 ~i~~~g~~~~~~~~ 266 (320)
T PRK13631 253 KILKTGTPYEIFTD 266 (320)
T ss_pred EEEEeCCHHHHhcC
Confidence 99999999998763
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-43 Score=389.18 Aligned_cols=218 Identities=32% Similarity=0.476 Sum_probs=191.8
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc---CCCCeEEECCeecCCCChHHHh
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD---VEQGSVRVDGMDVRELDVHWYR 1067 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~idG~di~~i~~~~lR 1067 (1230)
.|+++||+++|++ .++|+|+||++++||.+||+|+||||||||+++|+|+++ |++|+|.+||.|+.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999963 359999999999999999999999999999999999985 6899999999999988888889
Q ss_pred hcceEEcccccCCcccHHHHhccCCC--------CCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHH
Q 000909 1068 KHTALVSQEPVIYAGNIRDNIVFGKL--------DASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRI 1139 (1230)
Q Consensus 1068 ~~i~~VpQdp~Lf~gTIreNl~~g~~--------~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 1139 (1230)
++++|+||+|.+|..|++||+.++.. ...++++.++++..++.+++..+ ..+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCHHHHHHH
Confidence 99999999999999999999986521 11223466677777776554332 3456678999999999
Q ss_pred HHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhHHhhc
Q 000909 1140 AIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1140 alARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eLl~~ 1218 (1230)
+||||++++|++|||||||++||+++...+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999998877899999999999886 5799999999999999999999864
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-44 Score=375.21 Aligned_cols=221 Identities=33% Similarity=0.506 Sum_probs=181.7
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCe---ecCCCCHHHHh
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGV---DIRRLQLKWVR 430 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~---~i~~~~~~~~r 430 (1230)
.|+++|+++.|+. ..+++|||++|+.||.+|+.||||||||||+++|+|+..|++|+|.++|. |.++.. .-.
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRD 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhh
Confidence 4788999999974 45899999999999999999999999999999999999999999999999 555533 334
Q ss_pred hheEEEccCccccc-hhHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHH
Q 000909 431 REMGLVSQEHALFG-TSIKDNIMFGKLDA--TMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARA 507 (1230)
Q Consensus 431 ~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 507 (1230)
++||+|+|+..||. .||++||+||.+-. ...+. ..+..+.+.++-+ .++..-...+.+||||||||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~---~~r~rv~elL~lv--qL~~la~ryP~QLSGGQrQRVALARA 151 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEA---EIRARVEELLRLV--QLEGLADRYPAQLSGGQRQRVALARA 151 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChh---hHHHHHHHHHHHh--cccchhhcCchhcChHHHHHHHHHHH
Confidence 68999999999995 59999999996311 11111 1111222222222 34444456778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhhcCc
Q 000909 508 IIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRIDG 584 (1230)
Q Consensus 508 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 584 (1230)
|..+|++|+||||+++||++-.+.+.+.+++.. -|.|+++|||+.+++.. ||||++|++|+|...|+++|+...+..
T Consensus 152 LA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s 231 (345)
T COG1118 152 LAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPAS 231 (345)
T ss_pred hhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCc
Confidence 999999999999999999999999999988753 38999999999999755 999999999999999999999876443
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=381.04 Aligned_cols=220 Identities=50% Similarity=0.806 Sum_probs=197.6
Q ss_pred CccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHH
Q 000909 350 EVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWV 429 (1230)
Q Consensus 350 ~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~ 429 (1230)
...+.|+++|++++|+++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+
T Consensus 7 ~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 86 (226)
T cd03248 7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYL 86 (226)
T ss_pred CcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHH
Confidence 34578999999999975323469999999999999999999999999999999999999999999999999987777778
Q ss_pred hhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhc
Q 000909 430 RREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAII 509 (1230)
Q Consensus 430 r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 509 (1230)
++.++|++|++.+|+.|++||+.++.......++.+.+....+.++++.+|.|+++.+++.+.+||||||||++||||++
T Consensus 87 ~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 87 HSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred HhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 88999999999999999999999875444444555555556678889999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEeCCeE
Q 000909 510 KNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCL 569 (1230)
Q Consensus 510 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i 569 (1230)
++|+++||||||++||+.+...+.+.++++.+++|+|++||+++.+..||+|++|++|++
T Consensus 167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999987667999999999999988999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=366.51 Aligned_cols=198 Identities=31% Similarity=0.464 Sum_probs=174.7
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1070 (1230)
.+++++|+.+|+. ..||+|+||+|++||.|+|+||||||||||++++.|+..|++|+|.+||.++..- ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4899999999974 4699999999999999999999999999999999999999999999999988543 3569
Q ss_pred eEEcccccCCc-ccHHHHhccCCCCC------CHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHH
Q 000909 1071 ALVSQEPVIYA-GNIRDNIVFGKLDA------SENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIAR 1143 (1230)
Q Consensus 1071 ~~VpQdp~Lf~-gTIreNl~~g~~~~------sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalAR 1143 (1230)
+||+|++.||. -||++|+.++-... ..+.+.++++.+|+.+|-+..| .+||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHH
Confidence 99999999998 69999999875421 2345778888999988866654 579999999999999
Q ss_pred HHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeC--cEEE
Q 000909 1144 AIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIK-KLDSIALVAD--GRVV 1207 (1230)
Q Consensus 1144 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~D~I~vl~~--G~Iv 1207 (1230)
||+.+|+||+||||.+|||+.|...+|+-+.+.. .++||++|||+++... -+|||+||.+ |+|.
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 9999999999999999999999999999998875 3699999999998764 5799999999 5553
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-43 Score=394.26 Aligned_cols=218 Identities=28% Similarity=0.490 Sum_probs=185.8
Q ss_pred EEEEEEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCC--hHHHh
Q 000909 992 IEMRRVDFAYPSRP--DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELD--VHWYR 1067 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~--~~~lR 1067 (1230)
|+++||+++|+... ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++++.+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997421 136999999999999999999999999999999999999999999999999998754 45788
Q ss_pred hcceEEcccc--cCCcccHHHHhccCCC--CCCHH----HHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHH
Q 000909 1068 KHTALVSQEP--VIYAGNIRDNIVFGKL--DASEN----EVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRI 1139 (1230)
Q Consensus 1068 ~~i~~VpQdp--~Lf~gTIreNl~~g~~--~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 1139 (1230)
++++||||+| .+|+.|++||+.++.. +.+.+ ++.++++.+++. +.+........||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 9999999998 5788999999987531 23333 344555555553 01223455678999999999
Q ss_pred HHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhHHh
Q 000909 1140 AIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQLT 1216 (1230)
Q Consensus 1140 alARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eLl 1216 (1230)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||||++|++|++++.|++++++
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999998753 789999999999985 58999999999999999999987
Q ss_pred hc
Q 000909 1217 HM 1218 (1230)
Q Consensus 1217 ~~ 1218 (1230)
+.
T Consensus 234 ~~ 235 (287)
T PRK13637 234 KE 235 (287)
T ss_pred hC
Confidence 53
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=382.50 Aligned_cols=216 Identities=35% Similarity=0.512 Sum_probs=185.5
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCH---HHHhh
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQL---KWVRR 431 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~---~~~r~ 431 (1230)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 478999999963 359999999999999999999999999999999999999999999999999987664 56788
Q ss_pred heEEEccCccccch-hHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHH
Q 000909 432 EMGLVSQEHALFGT-SIKDNIMFGKL---DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARA 507 (1230)
Q Consensus 432 ~i~~v~Q~~~l~~~-ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 507 (1230)
.|+||+|++.+|+. |++||+.++.. ..+.++..+ .+.+.++.+ |+.........+||||||||++||||
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIRE-----IVLEKLEAV--GLRGAEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 99999999999986 99999987532 122222221 122344555 66656677778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 508 IIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 508 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
|+.+|+++||||||++||+.+++.+.+.+++.. .|+|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 999999999999999999999999999998864 38999999999999876 99999999999999999998865
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=382.63 Aligned_cols=215 Identities=33% Similarity=0.541 Sum_probs=188.2
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1070 (1230)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999963 3599999999999999999999999999999999999999999999999999888888889999
Q ss_pred eEEcccccCCcccHHHHhccCCC--CCCHHHHHHHHHHhchH-HHHHhccccccccccCCCCCCChhHHHHHHHHHHHcc
Q 000909 1071 ALVSQEPVIYAGNIRDNIVFGKL--DASENEVVEAARAANAH-EFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIR 1147 (1230)
Q Consensus 1071 ~~VpQdp~Lf~gTIreNl~~g~~--~~sd~ei~~al~~a~l~-~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~ 1147 (1230)
+|+||+|.+|+.|+++|+.++.. ...++++.+.++..++. ++ .......||||||||++||||+++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~~LS~G~~qrl~la~al~~ 148 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY-----------ATRDVKNLSGGEAQRVSIARTLAN 148 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH-----------hhCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999987532 11233455555555552 22 234566899999999999999999
Q ss_pred CCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHhhcc
Q 000909 1148 NPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTHMR 1219 (1230)
Q Consensus 1148 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~~ 1219 (1230)
+|++|||||||++||+++.+.+.+.|++.. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++...+
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 223 (241)
T PRK14250 149 NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNP 223 (241)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCC
Confidence 999999999999999999999999999864 38999999999999875 8999999999999999999998653
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=393.06 Aligned_cols=213 Identities=31% Similarity=0.525 Sum_probs=192.5
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1070 (1230)
.|+++||+.+|. +..+++|+||+|++||.++++|||||||||++++|.||..|++|+|.+||.|+.+++++ ++.|
T Consensus 5 ~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 5 ALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred eEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 599999999996 45699999999999999999999999999999999999999999999999999999886 6899
Q ss_pred eEEcccccCCc-ccHHHHhccCCC---CCCH----HHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHH
Q 000909 1071 ALVSQEPVIYA-GNIRDNIVFGKL---DASE----NEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIA 1142 (1230)
Q Consensus 1071 ~~VpQdp~Lf~-gTIreNl~~g~~---~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalA 1142 (1230)
++|+|+..||. .||+||++||.. ...+ +.+.++++.+++.++-.+.| ..|||||+||+|||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHH
Confidence 99999999997 599999999853 1232 36788999999988765544 57999999999999
Q ss_pred HHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhh-hhcCEEEEEeCcEEEEecCHhHHhhcc
Q 000909 1143 RAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTI-KKLDSIALVADGRVVERGTYAQLTHMR 1219 (1230)
Q Consensus 1143 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti-~~~D~I~vl~~G~Ive~Gt~~eLl~~~ 1219 (1230)
|||..+|++||||||-||||.+-...++.-+++.. .|.|.|.|||+-+.. ..+|||+||++|+|...|+|+|+..++
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999999999999988764 388999999998875 567999999999999999999999874
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=389.70 Aligned_cols=213 Identities=31% Similarity=0.553 Sum_probs=188.0
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1070 (1230)
-|+++||+++|+. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 4899999999963 23599999999999999999999999999999999999999999999999999988888889999
Q ss_pred eEEcccc--cCCcccHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHH
Q 000909 1071 ALVSQEP--VIYAGNIRDNIVFGKL--DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIA 1142 (1230)
Q Consensus 1071 ~~VpQdp--~Lf~gTIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalA 1142 (1230)
+||||+| .+|..|+++|+.++.. +.+ ++++.++++..++.++..+.| ..||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999998 6888999999987632 222 245667777778776654433 47999999999999
Q ss_pred HHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhHHh
Q 000909 1143 RAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQLT 1216 (1230)
Q Consensus 1143 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eLl 1216 (1230)
|||+++|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 99999999999999999999999999999999874 4899999999999985 58999999999999999987653
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-43 Score=384.42 Aligned_cols=217 Identities=28% Similarity=0.486 Sum_probs=184.1
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHH-hhcc
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWY-RKHT 1070 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~l-R~~i 1070 (1230)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+...+ |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 478999999963 359999999999999999999999999999999999999999999999999988877654 5679
Q ss_pred eEEcccccCCcc-cHHHHhccCCCCC------------CHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHH
Q 000909 1071 ALVSQEPVIYAG-NIRDNIVFGKLDA------------SENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQ 1137 (1230)
Q Consensus 1071 ~~VpQdp~Lf~g-TIreNl~~g~~~~------------sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 1137 (1230)
+|+||+|.+|.+ |++||+.++.... ..++.. ..+.+.++.+ |++.........|||||||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~q 150 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREAR-----ERAEELLERV--GLADLADRPAGELSYGQQR 150 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHH-----HHHHHHHHHc--CccchhhCChhhCCHHHHH
Confidence 999999999986 9999998653211 011111 1123344443 4544455666789999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHH
Q 000909 1138 RIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQL 1215 (1230)
Q Consensus 1138 rlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1215 (1230)
|++||||++++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 9999999999999999999999999999999999999875 68999999999999866 899999999999999999998
Q ss_pred hhc
Q 000909 1216 THM 1218 (1230)
Q Consensus 1216 l~~ 1218 (1230)
++.
T Consensus 231 ~~~ 233 (236)
T cd03219 231 RNN 233 (236)
T ss_pred ccC
Confidence 754
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=378.19 Aligned_cols=471 Identities=16% Similarity=0.130 Sum_probs=351.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccCCCChh---HHHHHHHHhHHHHHHHHhh
Q 000909 76 SLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTS---EVINSISKDTSLIQELLSE 152 (1230)
Q Consensus 76 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~f~~~~~~g~g---~l~~r~~~D~~~i~~~~~~ 152 (1230)
...+..++.+..++...+.|+...+..+.-..+-+.+.++-++...-|+.. ...|.+ ..=+|+..|+..+.+...+
T Consensus 89 l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~-~~~~~~~~dNpDQRi~eDi~~~t~~t~~ 167 (604)
T COG4178 89 LQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLA-QAGGIGLIDNPDQRIQEDIRNFTETTLD 167 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH-hcccccCCCChHHhHHHHHHHHHhhHHH
Confidence 334444444445555566666666666666666667777777777444443 111101 2237999999998888777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000909 153 KVPIFVMNASVFISGLAFSTYFSW---------------RLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAI 217 (1230)
Q Consensus 153 ~~~~~~~~~~~~i~~~~~~~~~~~---------------~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (1230)
....++.++++++...++++..+- .+..++++.+++..++..+++|...+..-+.++..+..-..
T Consensus 168 l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~ 247 (604)
T COG4178 168 LSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYS 247 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHH
Confidence 777788888777776666663322 23334444555556666678888888888888888888888
Q ss_pred HHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccHHHHHH
Q 000909 218 VEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLGIKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYA 296 (1230)
Q Consensus 218 ~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~ 296 (1230)
+.-.-++...|-.|+.|+.+.++.++......+...+......-...+. ....++.++-...++-....|.++.|.++.
T Consensus 248 Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmq 327 (604)
T COG4178 248 LVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQ 327 (604)
T ss_pred HHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHH
Confidence 8899999999999999999988877766665554433322222111111 222222233333445556789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----CCCCCCCCCc--ccCCccccEEEEEEEEECCCCCC
Q 000909 297 AGISFILSGLSLGSALPELKYFTEASIAASRIFDRIDRVP-----EIDGEDTKGL--VLDEVRGEIEFEHVKFSYPSRPD 369 (1230)
Q Consensus 297 ~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~-----~~~~~~~~~~--~~~~~~~~i~~~~v~~~y~~~~~ 369 (1230)
....+......++.+...+..+..-.+...|+.++.+... .......... ..+..+..|+++|++..-|+.
T Consensus 328 a~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~-- 405 (604)
T COG4178 328 AVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG-- 405 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--
Confidence 8888888888999999999999999999999988764321 1111110000 001114689999999998753
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheEEEccCccccchhHHH
Q 000909 370 SIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKD 449 (1230)
Q Consensus 370 ~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 449 (1230)
...+++.||++++||.+-|.||||||||||++.|+|+++--+|+|.+... ..+-|+||.|++-.||.||
T Consensus 406 ~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-----------~~~lflpQ~PY~p~GtLre 474 (604)
T COG4178 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-----------SALLFLPQRPYLPQGTLRE 474 (604)
T ss_pred CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC-----------CceEEecCCCCCCCccHHH
Confidence 36899999999999999999999999999999999999999999977621 3589999999999999999
Q ss_pred HHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 000909 450 NIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSE 527 (1230)
Q Consensus 450 Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~ 527 (1230)
-|+|.+.. .+++++.+++.++++.++++++.+- ..-...||+|||||+|+||.++++|++++|||+|||||++
T Consensus 475 ~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~-----~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~ 549 (604)
T COG4178 475 ALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEE-----DRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEE 549 (604)
T ss_pred HHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhcc-----CcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChH
Confidence 99998654 6889999999999999999987432 2234579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEe
Q 000909 528 SETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVD 565 (1230)
Q Consensus 528 ~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~ 565 (1230)
+|..+.+.+++...+.|+|-|.||.......++.+-++
T Consensus 550 ~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 550 TEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred HHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 99999999999888999999999998877766665554
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=390.28 Aligned_cols=217 Identities=30% Similarity=0.511 Sum_probs=191.3
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1070 (1230)
-|+++||+++|+.. .+++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+++
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 38999999999642 34699999999999999999999999999999999999999999999999999988888889999
Q ss_pred eEEcccc--cCCcccHHHHhccCCC--CCCH----HHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHH
Q 000909 1071 ALVSQEP--VIYAGNIRDNIVFGKL--DASE----NEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIA 1142 (1230)
Q Consensus 1071 ~~VpQdp--~Lf~gTIreNl~~g~~--~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalA 1142 (1230)
+|+||+| .+++.|++|||.++.. ..+. +++.++++..++.+++...| ..||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 5677899999987521 1222 34666777777776655443 47999999999999
Q ss_pred HHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCcEEEEecCHhHHhhcc
Q 000909 1143 RAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMR 1219 (1230)
Q Consensus 1143 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~ 1219 (1230)
|||+.+|+||||||||++||+.+...+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+..
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSG 231 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcCH
Confidence 999999999999999999999999999999998763 78999999999999989999999999999999999987653
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=396.80 Aligned_cols=221 Identities=28% Similarity=0.454 Sum_probs=189.1
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhhe
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREM 433 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i 433 (1230)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. +++|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5899999999963 4589999999999999999999999999999999999999999999999999877653 5789
Q ss_pred EEEccCccccch-hHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhcc
Q 000909 434 GLVSQEHALFGT-SIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIK 510 (1230)
Q Consensus 434 ~~v~Q~~~l~~~-ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 510 (1230)
|||+|++.+|+. |++|||.|+... .+.++..+ .+.+.++.+ |+.......+.+||||||||++|||||+.
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~-----~v~~~l~~~--gl~~~~~r~~~~LSgGq~QRVaLARaL~~ 153 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQ-----RVKEALELV--DLAGFEDRYVDQISGGQQQRVALARALIL 153 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 999999999975 999999987431 12222221 223334444 66666677788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhhcCcHH
Q 000909 511 NPVILLLDEATSALDSESETLVQNALDQASL--GRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRIDGHY 586 (1230)
Q Consensus 511 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 586 (1230)
+|++||||||||+||+.+.+.+.+.|+++.+ |+|+|+|||+++.+.. ||+|++|++|++++.|+++++..++...|
T Consensus 154 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~~~~ 232 (351)
T PRK11432 154 KPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRF 232 (351)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCchH
Confidence 9999999999999999999999999988643 8999999999999855 99999999999999999999987544333
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=398.90 Aligned_cols=220 Identities=29% Similarity=0.458 Sum_probs=188.6
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhhe
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREM 433 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i 433 (1230)
.|+++|++++|++ +..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.+||.++.+.++. +++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999942 24599999999999999999999999999999999999999999999999999887764 4789
Q ss_pred EEEccCccccc-hhHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhcc
Q 000909 434 GLVSQEHALFG-TSIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIK 510 (1230)
Q Consensus 434 ~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 510 (1230)
|||+|++.+|+ .||+|||.|+... .+..+.. ..+.+.++.+ |++........+||||||||++|||||++
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~~~LSgGq~QRvalARAL~~ 151 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIE-----ERVAEAARIL--ELEPLLDRKPRELSGGQRQRVAMGRAIVR 151 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHH-----HHHHHHHHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999996 4999999987431 1222221 1223445555 67667777888999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhhcCc
Q 000909 511 NPVILLLDEATSALDSESETLVQNALDQASL--GRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRIDG 584 (1230)
Q Consensus 511 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 584 (1230)
+|++||||||||+||+.++..+.+.++++.+ |.|+|+|||+++.+.. ||+|++|++|++++.|+++++.+++..
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (356)
T PRK11650 152 EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPAS 228 (356)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCcc
Confidence 9999999999999999999999999987643 8999999999998865 999999999999999999999875443
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=400.86 Aligned_cols=216 Identities=32% Similarity=0.493 Sum_probs=185.6
Q ss_pred EEEEEEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHH---Hh
Q 000909 992 IEMRRVDFAYPSRP-DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW---YR 1067 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---lR 1067 (1230)
|+++||+++|+... +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996211 346999999999999999999999999999999999999999999999999999887654 47
Q ss_pred hcceEEcccccCCc-ccHHHHhccCCC--CCCH----HHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHH
Q 000909 1068 KHTALVSQEPVIYA-GNIRDNIVFGKL--DASE----NEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIA 1140 (1230)
Q Consensus 1068 ~~i~~VpQdp~Lf~-gTIreNl~~g~~--~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 1140 (1230)
++++||||++.+|. .|++||+.++.. ..+. +++.+.++..++.++. .....+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKA-----------DRYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHHH
Confidence 89999999999986 699999986521 2222 2344555555554433 3345689999999999
Q ss_pred HHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHhh
Q 000909 1141 IARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTH 1217 (1230)
Q Consensus 1141 lARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~ 1217 (1230)
|||||+++|+||||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998753 7899999999999875 89999999999999999999986
Q ss_pred c
Q 000909 1218 M 1218 (1230)
Q Consensus 1218 ~ 1218 (1230)
.
T Consensus 231 ~ 231 (343)
T PRK11153 231 H 231 (343)
T ss_pred C
Confidence 6
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=399.37 Aligned_cols=213 Identities=27% Similarity=0.469 Sum_probs=188.2
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1070 (1230)
.|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+.++. ++++
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5999999999963 4599999999999999999999999999999999999999999999999999887753 6889
Q ss_pred eEEcccccCCcc-cHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHH
Q 000909 1071 ALVSQEPVIYAG-NIRDNIVFGKL--DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIAR 1143 (1230)
Q Consensus 1071 ~~VpQdp~Lf~g-TIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalAR 1143 (1230)
+||+|++.+|.. |++||+.|+.. ..+ ++++.++++..++.++..+ ....||||||||+||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r-----------~~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDR-----------YVDQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHHH
Confidence 999999999975 99999998632 122 3456677777777665433 34579999999999999
Q ss_pred HHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhHHhhcc
Q 000909 1144 AIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQLTHMR 1219 (1230)
Q Consensus 1144 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eLl~~~ 1219 (1230)
||+++|++||||||||+||+.+...+++.|++..+ ++|+|+|||+++.+. -||+|+||++|+|++.|+|+++.++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p 228 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999999998754 799999999999875 57999999999999999999998763
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=389.29 Aligned_cols=221 Identities=28% Similarity=0.486 Sum_probs=186.0
Q ss_pred EEEEEEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCC----ChHH
Q 000909 992 IEMRRVDFAYPSRP--DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVREL----DVHW 1065 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i----~~~~ 1065 (1230)
|+++||+++|++.+ ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 89999999996422 23699999999999999999999999999999999999999999999999999754 3467
Q ss_pred HhhcceEEcccc--cCCcccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHHhccccccc-cccCCCCCCChhHHHHHH
Q 000909 1066 YRKHTALVSQEP--VIYAGNIRDNIVFGKL--DASENEVVEAARAANAHEFISSLKDGYET-ECGERGVQLSGGQRQRIA 1140 (1230)
Q Consensus 1066 lR~~i~~VpQdp--~Lf~gTIreNl~~g~~--~~sd~ei~~al~~a~l~~~i~~lp~gldt-~vge~G~~LSgGQrQrla 1140 (1230)
+|++|+||||+| .+|..|++||+.++.. +.+.++..+. +.+.++.+ |+++ .....+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 899999999998 6888999999987632 2333333221 12233332 4543 234567889999999999
Q ss_pred HHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhHHhh
Q 000909 1141 IARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQLTH 1217 (1230)
Q Consensus 1141 lARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eLl~ 1217 (1230)
|||||+.+|+||||||||++||+.+...+.+.++++. .|+|+|+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999874 4899999999999985 579999999999999999999876
Q ss_pred cc
Q 000909 1218 MR 1219 (1230)
Q Consensus 1218 ~~ 1219 (1230)
+.
T Consensus 236 ~~ 237 (286)
T PRK13646 236 DK 237 (286)
T ss_pred CH
Confidence 53
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=385.67 Aligned_cols=218 Identities=31% Similarity=0.489 Sum_probs=188.8
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCCCeEEECCeecCC--CCh
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD-----VEQGSVRVDGMDVRE--LDV 1063 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~~ 1063 (1230)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 4999999999963 359999999999999999999999999999999999975 589999999999875 345
Q ss_pred HHHhhcceEEcccccCCcccHHHHhccCCC--CC-----CHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHH
Q 000909 1064 HWYRKHTALVSQEPVIYAGNIRDNIVFGKL--DA-----SENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQR 1136 (1230)
Q Consensus 1064 ~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~--~~-----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 1136 (1230)
..+|++++|+||++.+|..|++||+.++.. .. .++++.++++.+++.+.+.. .......+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHH
Confidence 678899999999999999999999986421 11 13456667777777554332 23455678999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhHH
Q 000909 1137 QRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQL 1215 (1230)
Q Consensus 1137 QrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eL 1215 (1230)
||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|++||+++.+. .||+|++|++|+|++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999999867899999999999986 4899999999999999999999
Q ss_pred hhc
Q 000909 1216 THM 1218 (1230)
Q Consensus 1216 l~~ 1218 (1230)
.+.
T Consensus 236 ~~~ 238 (253)
T PRK14242 236 FTR 238 (253)
T ss_pred HcC
Confidence 865
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=388.07 Aligned_cols=219 Identities=28% Similarity=0.458 Sum_probs=191.2
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1070 (1230)
-|+++||+++|+.....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743334699999999999999999999999999999999999999999999999999888888889999
Q ss_pred eEEcccc--cCCcccHHHHhccCCC--CCCHH----HHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHH
Q 000909 1071 ALVSQEP--VIYAGNIRDNIVFGKL--DASEN----EVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIA 1142 (1230)
Q Consensus 1071 ~~VpQdp--~Lf~gTIreNl~~g~~--~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalA 1142 (1230)
+|+||+| .++..|+.+||.++.. ..+++ .+.++++.+++.++... ....||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTR-----------EPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 9999998 4778899999986521 23333 34566677777655432 3467999999999999
Q ss_pred HHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCcEEEEecCHhHHhhccc
Q 000909 1143 RAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRG 1220 (1230)
Q Consensus 1143 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~g 1220 (1230)
|||+++|+||||||||++||+.+.+.+.+.|++..+ |+|+|+|||+++.+..||+|++|++|++++.|+++++++..+
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 232 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSE 232 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHH
Confidence 999999999999999999999999999999998754 799999999999998899999999999999999999886543
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=384.92 Aligned_cols=220 Identities=30% Similarity=0.496 Sum_probs=190.3
Q ss_pred cCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCCCeEEECCeecCC--C
Q 000909 989 SGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD-----VEQGSVRVDGMDVRE--L 1061 (1230)
Q Consensus 989 ~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i 1061 (1230)
.+.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++ |++|+|.+||.++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 467999999999963 359999999999999999999999999999999999986 589999999999863 4
Q ss_pred ChHHHhhcceEEcccccCCcccHHHHhccCCC---CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChh
Q 000909 1062 DVHWYRKHTALVSQEPVIYAGNIRDNIVFGKL---DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGG 1134 (1230)
Q Consensus 1062 ~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~---~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG 1134 (1230)
+...+|++++|+||+|.+|..|+++|+.++.. ..+ +++++++++.+++.+.+. ....+...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHH
Confidence 56678999999999999999999999986521 122 244666777777644332 2234566789999
Q ss_pred HHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHh
Q 000909 1135 QRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYA 1213 (1230)
Q Consensus 1135 QrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~ 1213 (1230)
||||++||||++++|+||||||||++||+++.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998778899999999999864 7999999999999999999
Q ss_pred HHhhc
Q 000909 1214 QLTHM 1218 (1230)
Q Consensus 1214 eLl~~ 1218 (1230)
++.+.
T Consensus 241 ~~~~~ 245 (260)
T PRK10744 241 TIFTK 245 (260)
T ss_pred HHHhC
Confidence 99865
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=390.18 Aligned_cols=216 Identities=26% Similarity=0.465 Sum_probs=184.5
Q ss_pred EEEEEEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCC----CChHH
Q 000909 992 IEMRRVDFAYPSRP--DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRE----LDVHW 1065 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~----i~~~~ 1065 (1230)
|+++||+|+|+... ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997321 1259999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhhcceEEcccc--cCCcccHHHHhccCCC--CCCHH----HHHHHHHHhchH-HHHHhccccccccccCCCCCCChhHH
Q 000909 1066 YRKHTALVSQEP--VIYAGNIRDNIVFGKL--DASEN----EVVEAARAANAH-EFISSLKDGYETECGERGVQLSGGQR 1136 (1230)
Q Consensus 1066 lR~~i~~VpQdp--~Lf~gTIreNl~~g~~--~~sd~----ei~~al~~a~l~-~~i~~lp~gldt~vge~G~~LSgGQr 1136 (1230)
+|++++||+|+| .+|..|+.+|+.++.. ..+.+ ++.++++..++. ++ ......+||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~~LSgGqk 150 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEF-----------WEKSPFELSGGQM 150 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhh-----------ccCCcccCCHHHH
Confidence 899999999998 7999999999987632 22333 244445555552 22 2345578999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhH
Q 000909 1137 QRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQ 1214 (1230)
Q Consensus 1137 QrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~e 1214 (1230)
||++|||||+.+|+||||||||++||+.+.+.+.+.++++. .++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998865 4899999999999885 589999999999999999999
Q ss_pred Hhhc
Q 000909 1215 LTHM 1218 (1230)
Q Consensus 1215 Ll~~ 1218 (1230)
+..+
T Consensus 231 ~~~~ 234 (288)
T PRK13643 231 VFQE 234 (288)
T ss_pred HHcC
Confidence 8754
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=384.13 Aligned_cols=218 Identities=28% Similarity=0.459 Sum_probs=188.4
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CCCeEEECCeecCC--CCh
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV-----EQGSVRVDGMDVRE--LDV 1063 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i~~ 1063 (1230)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 5999999999963 3599999999999999999999999999999999999997 48999999999863 345
Q ss_pred HHHhhcceEEcccccCCcccHHHHhccCCC--C-C----CHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHH
Q 000909 1064 HWYRKHTALVSQEPVIYAGNIRDNIVFGKL--D-A----SENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQR 1136 (1230)
Q Consensus 1064 ~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~--~-~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 1136 (1230)
..+|++++|+||+|.+|+.|++||+.++.. . . .++.+.++++.+++.+.+ ++.+++ ...+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~----~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNT----NALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhC----CcccCCHHHH
Confidence 678899999999999999999999987531 1 1 134456677777764433 233444 4568999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHH
Q 000909 1137 QRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQL 1215 (1230)
Q Consensus 1137 QrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1215 (1230)
||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 799999999999999999999
Q ss_pred hhc
Q 000909 1216 THM 1218 (1230)
Q Consensus 1216 l~~ 1218 (1230)
.++
T Consensus 237 ~~~ 239 (254)
T PRK14273 237 FFN 239 (254)
T ss_pred HhC
Confidence 865
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=382.47 Aligned_cols=213 Identities=33% Similarity=0.538 Sum_probs=183.0
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCC---hHHHhh
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELD---VHWYRK 1068 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~---~~~lR~ 1068 (1230)
|+++||+++|++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+ ...+|+
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 478999999963 146999999999999999999999999999999999999999999999999998876 466889
Q ss_pred cceEEcccccCCc-ccHHHHhccCCCC--------------CCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCCh
Q 000909 1069 HTALVSQEPVIYA-GNIRDNIVFGKLD--------------ASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSG 1133 (1230)
Q Consensus 1069 ~i~~VpQdp~Lf~-gTIreNl~~g~~~--------------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSg 1133 (1230)
+++|+||++.+|. .|+++|+.++... ..++++.++++..++.+ .....+.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD-----------KAYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChh-----------hhCCCcccCCH
Confidence 9999999998887 6999999864321 11223444455554433 23445678999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeCcEEEEec
Q 000909 1134 GQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIK-KLDSIALVADGRVVERG 1210 (1230)
Q Consensus 1134 GQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~G 1210 (1230)
|||||++||||++++|+||||||||++||+.+...+.+.|++.. .++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999999874 3899999999999998 57999999999999999
Q ss_pred CHhHHhh
Q 000909 1211 TYAQLTH 1217 (1230)
Q Consensus 1211 t~~eLl~ 1217 (1230)
+++++.+
T Consensus 228 ~~~~~~~ 234 (241)
T cd03256 228 PPAELTD 234 (241)
T ss_pred CHHHhhH
Confidence 9999754
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=377.87 Aligned_cols=203 Identities=31% Similarity=0.491 Sum_probs=175.5
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChH---HHhh
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVH---WYRK 1068 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~lR~ 1068 (1230)
|+++||+++|++. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999632 23599999999999999999999999999999999999999999999999999876543 4788
Q ss_pred cceEEcccccCCc-ccHHHHhccCCC------CCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHH
Q 000909 1069 HTALVSQEPVIYA-GNIRDNIVFGKL------DASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAI 1141 (1230)
Q Consensus 1069 ~i~~VpQdp~Lf~-gTIreNl~~g~~------~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlal 1141 (1230)
+++|+||+|.+|. .|++||+.++.. ...++++.++++..++.++..+. ..+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHAL-----------PMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHHHHH
Confidence 9999999999887 599999986421 11234567777777776654433 34799999999999
Q ss_pred HHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCcEE
Q 000909 1142 ARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGRV 1206 (1230)
Q Consensus 1142 ARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~I 1206 (1230)
||||+++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999864 47899999999999875 799999999985
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=382.65 Aligned_cols=217 Identities=31% Similarity=0.512 Sum_probs=187.4
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCC-----CCeEEECCeecCCC--ChH
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVE-----QGSVRVDGMDVREL--DVH 1064 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~-----~G~I~idG~di~~i--~~~ 1064 (1230)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999963 35999999999999999999999999999999999999998 99999999999763 456
Q ss_pred HHhhcceEEcccccCCcccHHHHhccCCC--C-CC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHH
Q 000909 1065 WYRKHTALVSQEPVIYAGNIRDNIVFGKL--D-AS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQ 1137 (1230)
Q Consensus 1065 ~lR~~i~~VpQdp~Lf~gTIreNl~~g~~--~-~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 1137 (1230)
.+|++++|+||++.+|..|++||+.++.. . .+ ++++.++++..++.+++. ........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 77899999999999999999999986421 1 12 234566677777653332 1223455689999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHh
Q 000909 1138 RIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLT 1216 (1230)
Q Consensus 1138 rlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl 1216 (1230)
|++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++++++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988767999999999998865 7999999999999999999998
Q ss_pred hc
Q 000909 1217 HM 1218 (1230)
Q Consensus 1217 ~~ 1218 (1230)
+.
T Consensus 232 ~~ 233 (247)
T TIGR00972 232 TN 233 (247)
T ss_pred hC
Confidence 65
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=381.86 Aligned_cols=212 Identities=29% Similarity=0.446 Sum_probs=181.7
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcce
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1071 (1230)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. .|++++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999963 469999999999999999999999999999999999999999999999999876653 367899
Q ss_pred EEcccccCCc-ccHHHHhccCCCC--C----C----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHH
Q 000909 1072 LVSQEPVIYA-GNIRDNIVFGKLD--A----S----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIA 1140 (1230)
Q Consensus 1072 ~VpQdp~Lf~-gTIreNl~~g~~~--~----s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 1140 (1230)
||||+|.+|. .|++||+.++... . . .+++.++++..++.++. .....+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA-----------DRYPAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHHH
Confidence 9999999986 5999999875321 1 1 12344555555554433 3344679999999999
Q ss_pred HHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHhh
Q 000909 1141 IARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTH 1217 (1230)
Q Consensus 1141 lARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~ 1217 (1230)
|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999998753 7899999999998765 89999999999999999999986
Q ss_pred cc
Q 000909 1218 MR 1219 (1230)
Q Consensus 1218 ~~ 1219 (1230)
..
T Consensus 227 ~~ 228 (239)
T cd03296 227 HP 228 (239)
T ss_pred CC
Confidence 53
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=377.31 Aligned_cols=211 Identities=25% Similarity=0.430 Sum_probs=181.1
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcce
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1071 (1230)
|+++||+++|++. ..++|+|+||++++||.+||+||||||||||+++|.|+++|++|+|.+||.++.... ..+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 5789999999642 146999999999999999999999999999999999999999999999999987643 66788999
Q ss_pred EEcccccCC-cccHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHH
Q 000909 1072 LVSQEPVIY-AGNIRDNIVFGKL--DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARA 1144 (1230)
Q Consensus 1072 ~VpQdp~Lf-~gTIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARA 1144 (1230)
|+||+|.+| ..|+++|+.++.. ..+ ++++.++++..++.+.. + ....+||||||||++||||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LS~G~~qrv~la~a 147 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-------N----KRARTLSGGMKRKLSLAIA 147 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-------h----ChhhhCCHHHHHHHHHHHH
Confidence 999999998 5799999976421 112 23345555655554432 2 2345799999999999999
Q ss_pred HccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHH
Q 000909 1145 IIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQL 1215 (1230)
Q Consensus 1145 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1215 (1230)
++++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999998778999999999999875 799999999999999999875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=397.81 Aligned_cols=201 Identities=26% Similarity=0.418 Sum_probs=178.9
Q ss_pred cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHH----hhcceEEcccccCCc-
Q 000909 1007 ALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWY----RKHTALVSQEPVIYA- 1081 (1230)
Q Consensus 1007 ~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~l----R~~i~~VpQdp~Lf~- 1081 (1230)
.++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.|+...+...+ |++++||||++.+|+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 458999999999999999999999999999999999999999999999999999998887 789999999999997
Q ss_pred ccHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q 000909 1082 GNIRDNIVFGKL--DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLD 1155 (1230)
Q Consensus 1082 gTIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p~ILlLD 1155 (1230)
.||+||+.++.. ..+ .+++.++++.+++.++..+ .+.+||||||||++|||||+++|+|||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~-----------~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHR-----------YPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhC-----------ChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 599999987532 122 3456677777777655443 44579999999999999999999999999
Q ss_pred cccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhh-hhcCEEEEEeCcEEEEecCHhHHhhc
Q 000909 1156 EATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTI-KKLDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1156 EaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti-~~~D~I~vl~~G~Ive~Gt~~eLl~~ 1218 (1230)
||||+||+.+.+.+++.+.+.. .++|+|+|||+++.+ ..||+|++|++|++++.|+|++++++
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 9999999999999999998874 389999999999986 45899999999999999999999876
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=397.34 Aligned_cols=214 Identities=29% Similarity=0.483 Sum_probs=188.9
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1070 (1230)
.|+++||+++|+. +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+++.. +++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 3899999999942 24599999999999999999999999999999999999999999999999999988764 4789
Q ss_pred eEEcccccCCc-ccHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHH
Q 000909 1071 ALVSQEPVIYA-GNIRDNIVFGKL--DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIAR 1143 (1230)
Q Consensus 1071 ~~VpQdp~Lf~-gTIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalAR 1143 (1230)
+||||++.+|. .|++||+.|+.. ..+ .+++.++++..++.++..+.| .+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 599999998632 122 245667788888877765544 479999999999999
Q ss_pred HHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhHHhhcc
Q 000909 1144 AIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQLTHMR 1219 (1230)
Q Consensus 1144 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eLl~~~ 1219 (1230)
||+++|++||||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++.++.
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 99999999999999999999999999999998754 789999999999775 58999999999999999999998763
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=397.17 Aligned_cols=211 Identities=30% Similarity=0.471 Sum_probs=182.5
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHH----hhheEEEccCccccch
Q 000909 370 SIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWV----RREMGLVSQEHALFGT 445 (1230)
Q Consensus 370 ~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~----r~~i~~v~Q~~~l~~~ 445 (1230)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++...+..++ |++|+||+|++++|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 459999999999999999999999999999999999999999999999999999988777 7899999999999975
Q ss_pred -hHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCC
Q 000909 446 -SIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATS 522 (1230)
Q Consensus 446 -ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts 522 (1230)
||+|||.++... .+.++..+ .+.+.++.+ |++...++.+.+||||||||++|||||+.+|+|+|||||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~v--gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~s 158 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKE-----KALELLKLV--GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFS 158 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhc--CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 999999986432 11222211 223444444 77777888889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhhcCcHHH
Q 000909 523 ALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRIDGHYA 587 (1230)
Q Consensus 523 ~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 587 (1230)
+||+.+.+.+++.+.++. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++++++...|.
T Consensus 159 aLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 159 ALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 999999999999998764 38999999999998755 999999999999999999999875444443
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=398.03 Aligned_cols=213 Identities=28% Similarity=0.432 Sum_probs=186.3
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1070 (1230)
.|+++||+++|++ .++|+|+||++++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.++. ++++
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 3589999999999999999999999999999999999999999999999999887764 6789
Q ss_pred eEEcccccCCc-ccHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHH
Q 000909 1071 ALVSQEPVIYA-GNIRDNIVFGKL--DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIAR 1143 (1230)
Q Consensus 1071 ~~VpQdp~Lf~-gTIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalAR 1143 (1230)
+||||++.+|. .|++||+.|+.. ..+ ++++.++++..++.++. .....+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~-----------~~~~~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSE-----------RKYPGQLSGGQQQRVALAR 147 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchh-----------hCChhhCCHHHHHHHHHHH
Confidence 99999999996 699999998632 122 23455566666655443 3445689999999999999
Q ss_pred HHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhHHhhcc
Q 000909 1144 AIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQLTHMR 1219 (1230)
Q Consensus 1144 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eLl~~~ 1219 (1230)
||+++|++||||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+. -||+|++|++|++++.|+|+++.++.
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999999998754 789999999999875 58999999999999999999999863
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=379.44 Aligned_cols=220 Identities=28% Similarity=0.474 Sum_probs=195.9
Q ss_pred ccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHh
Q 000909 988 ISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYR 1067 (1230)
Q Consensus 988 ~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR 1067 (1230)
..+.|+++||+++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||
T Consensus 36 ~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------------ 98 (282)
T cd03291 36 DDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------ 98 (282)
T ss_pred CCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------
Confidence 34579999999952 3599999999999999999999999999999999999999999999998
Q ss_pred hcceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHcc
Q 000909 1068 KHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIR 1147 (1230)
Q Consensus 1068 ~~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~ 1147 (1230)
+++|+||++.+|++|+++|+.++.. ..+.++.++++.+++.+.+..+|.++++.+++.+.+||||||||++|||||++
T Consensus 99 -~i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~ 176 (282)
T cd03291 99 -RISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYK 176 (282)
T ss_pred -EEEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 3999999999999999999987632 23445677788889999999999999999999999999999999999999999
Q ss_pred CCCEEEeecccCCcCHHHHHHHHHH-HHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEEEEecCHhHHhhcccccHHHh
Q 000909 1148 NPTILLLDEATSALDVQSEQVVQEA-LDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLA 1226 (1230)
Q Consensus 1148 ~p~ILlLDEaTSaLD~~te~~I~~~-l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~g~y~~l~ 1226 (1230)
+|++|||||||++||+++...+.+. +++..+++|+|+|||+++.+..||+|++|++|++++.|+++++.+....|.+.+
T Consensus 177 ~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 256 (282)
T cd03291 177 DADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSKL 256 (282)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcchHHHHHH
Confidence 9999999999999999999988775 455556899999999999999999999999999999999999987555555433
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=396.68 Aligned_cols=221 Identities=32% Similarity=0.517 Sum_probs=192.0
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhhe
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREM 433 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i 433 (1230)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.+||+++.+.++. ++.|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999973 3589999999999999999999999999999999999999999999999999877654 5789
Q ss_pred EEEccCccccc-hhHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhcc
Q 000909 434 GLVSQEHALFG-TSIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIK 510 (1230)
Q Consensus 434 ~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 510 (1230)
|||+|++.+|+ .|++|||.|+... .+.++. ...+++.++.+ |++......+.+||||||||++|||||+.
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~-----~~~~~~~l~~l--~L~~~~~~~~~~LSgGq~QRvaLARaL~~ 151 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEV-----AERVAELLDLV--GLPGSERKYPGQLSGGQQQRVALARALAT 151 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999996 5999999987432 122222 12344556666 78777888899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhhcCcHH
Q 000909 511 NPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRIDGHY 586 (1230)
Q Consensus 511 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 586 (1230)
+|+++|||||||+||+.+++.+.+.|++.. .|.|+|+|||+++.+.. ||+|++|++|++++.|+++++.+++...+
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~~~ 230 (353)
T TIGR03265 152 SPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF 230 (353)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence 999999999999999999999999998764 38999999999999865 99999999999999999999987644333
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=388.13 Aligned_cols=215 Identities=22% Similarity=0.434 Sum_probs=186.5
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecC--CCChHHHhh
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVR--ELDVHWYRK 1068 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~--~i~~~~lR~ 1068 (1230)
-|+++||+++|+. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.|+. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999962 245999999999999999999999999999999999999999999999999984 345667899
Q ss_pred cceEEcccc--cCCcccHHHHhccCCC--CCCH----HHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHH
Q 000909 1069 HTALVSQEP--VIYAGNIRDNIVFGKL--DASE----NEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIA 1140 (1230)
Q Consensus 1069 ~i~~VpQdp--~Lf~gTIreNl~~g~~--~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 1140 (1230)
+++|+||+| .+|+.|++||+.++.. +.+. +.+.++++..++.++. .....+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-----------DKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hCCcccCCHHHHHHHH
Confidence 999999998 5788999999986422 2232 3345556666665442 3456789999999999
Q ss_pred HHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhHHhh
Q 000909 1141 IARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQLTH 1217 (1230)
Q Consensus 1141 lARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eLl~ 1217 (1230)
|||||+.+|+||||||||++||+++...+.+.|++..+ |+|+|++||+++.+. .||+|++|++|++++.|+++++++
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998753 899999999999987 589999999999999999999886
Q ss_pred c
Q 000909 1218 M 1218 (1230)
Q Consensus 1218 ~ 1218 (1230)
.
T Consensus 232 ~ 232 (283)
T PRK13636 232 E 232 (283)
T ss_pred C
Confidence 4
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-42 Score=385.98 Aligned_cols=221 Identities=30% Similarity=0.496 Sum_probs=189.4
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhhe
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREM 433 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i 433 (1230)
-|+++||+++|++...+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743224599999999999999999999999999999999999999999999999999887887888999
Q ss_pred EEEccCcc--ccchhHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhc
Q 000909 434 GLVSQEHA--LFGTSIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAII 509 (1230)
Q Consensus 434 ~~v~Q~~~--l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 509 (1230)
+||+|+|. ++..||+|||.++... .+.++..+ .+.+.++.+ |++........+||||||||++|||||+
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~qrv~lAral~ 156 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKE-----RVNEALELV--GMQDFKEREPARLSGGQKQRVAIAGAVA 156 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHH-----HHHHHHHHC--CCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999984 5567999999987432 22222211 122334444 6666677778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhccCEEEEEeCCeEEEecChhHHHhh
Q 000909 510 KNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 510 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 581 (1230)
.+|++|||||||++||+.+.+.+.+.++++. .|+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 157 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 157 MRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 9999999999999999999999999998864 38999999999999978999999999999999999988653
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=378.55 Aligned_cols=216 Identities=32% Similarity=0.489 Sum_probs=184.6
Q ss_pred EEEEEEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChH---HHh
Q 000909 992 IEMRRVDFAYPSRP-DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVH---WYR 1067 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~lR 1067 (1230)
|+++|++++|+++. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996431 12699999999999999999999999999999999999999999999999999877654 357
Q ss_pred hcceEEcccccCCc-ccHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHH
Q 000909 1068 KHTALVSQEPVIYA-GNIRDNIVFGKL--DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIA 1140 (1230)
Q Consensus 1068 ~~i~~VpQdp~Lf~-gTIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 1140 (1230)
++++|+||+|.+|. .|++||+.++.. ..+ .+++.++++..++.+... ....+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKAD-----------AYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------cChhhCCHHHHHHHH
Confidence 89999999999997 699999976421 112 234555666666654433 344679999999999
Q ss_pred HHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHhh
Q 000909 1141 IARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTH 1217 (1230)
Q Consensus 1141 lARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~ 1217 (1230)
||||++++|++|||||||++||+.+...+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|+++++++
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999999875 38899999999999875 79999999999999999999875
Q ss_pred c
Q 000909 1218 M 1218 (1230)
Q Consensus 1218 ~ 1218 (1230)
.
T Consensus 231 ~ 231 (233)
T cd03258 231 N 231 (233)
T ss_pred C
Confidence 3
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=390.20 Aligned_cols=217 Identities=25% Similarity=0.431 Sum_probs=184.3
Q ss_pred EEEEEEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCC----CChHH
Q 000909 992 IEMRRVDFAYPSRP--DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRE----LDVHW 1065 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~----i~~~~ 1065 (1230)
|+++||+++|+... ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 89999999996421 1369999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhhcceEEcccc--cCCcccHHHHhccCCC--CCCHHH----HHHHHHHhchHHHHHhccccccccccCCCCCCChhHHH
Q 000909 1066 YRKHTALVSQEP--VIYAGNIRDNIVFGKL--DASENE----VVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQ 1137 (1230)
Q Consensus 1066 lR~~i~~VpQdp--~Lf~gTIreNl~~g~~--~~sd~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 1137 (1230)
.|++++||||+| .+|+.|++||+.++.. ..+.++ +.++++.+++.+. ........|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEE----------LLARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChh----------hhhCCcccCCHHHHH
Confidence 888999999998 6888999999987632 223332 3445555555321 123445689999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhH
Q 000909 1138 RIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQ 1214 (1230)
Q Consensus 1138 rlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~e 1214 (1230)
|++|||||+.+|++|||||||++||+.+...+.+.|++..+ |.|||+|||+++.+. .||||++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998753 789999999999986 589999999999999999999
Q ss_pred Hhhc
Q 000909 1215 LTHM 1218 (1230)
Q Consensus 1215 Ll~~ 1218 (1230)
+.+.
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8754
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=395.75 Aligned_cols=225 Identities=34% Similarity=0.521 Sum_probs=191.2
Q ss_pred EEEEEEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHH---Hh
Q 000909 355 IEFEHVKFSYPSRP-DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKW---VR 430 (1230)
Q Consensus 355 i~~~~v~~~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~---~r 430 (1230)
|+++|++|+|+... ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997311 346999999999999999999999999999999999999999999999999998876543 47
Q ss_pred hheEEEccCccccc-hhHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHH
Q 000909 431 REMGLVSQEHALFG-TSIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARA 507 (1230)
Q Consensus 431 ~~i~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 507 (1230)
++||||+|++.+|. .|++||+.++.. ..+.++.. ..+.+.++.+ |++........+||||||||++||||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIK-----ARVTELLELV--GLSDKADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 88999999999986 599999987532 11222221 1234456666 77777778888999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhhcCc
Q 000909 508 IIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRIDG 584 (1230)
Q Consensus 508 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 584 (1230)
|+.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++...+..
T Consensus 155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~ 234 (343)
T PRK11153 155 LASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKH 234 (343)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCc
Confidence 999999999999999999999999999999864 38999999999999876 999999999999999999999764333
Q ss_pred HH
Q 000909 585 HY 586 (1230)
Q Consensus 585 ~~ 586 (1230)
.+
T Consensus 235 ~~ 236 (343)
T PRK11153 235 PL 236 (343)
T ss_pred HH
Confidence 33
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=380.81 Aligned_cols=213 Identities=29% Similarity=0.497 Sum_probs=181.9
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCCh---HHHhh
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDV---HWYRK 1068 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~---~~lR~ 1068 (1230)
|+++||+++|+. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+++. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 789999999961 2459999999999999999999999999999999999999999999999999987764 44788
Q ss_pred cceEEcccccCCc-ccHHHHhccCCCC--------------CCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCCh
Q 000909 1069 HTALVSQEPVIYA-GNIRDNIVFGKLD--------------ASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSG 1133 (1230)
Q Consensus 1069 ~i~~VpQdp~Lf~-gTIreNl~~g~~~--------------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSg 1133 (1230)
+++|+||++.+|. .|+++|+.++... ..++++.++++..++.++ ......+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADK-----------AYQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCH
Confidence 9999999998886 5999999865321 012234455555555433 3345668999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeCcEEEEec
Q 000909 1134 GQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIK-KLDSIALVADGRVVERG 1210 (1230)
Q Consensus 1134 GQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~G 1210 (1230)
|||||++|||||+++|++|||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999874 3789999999999985 48999999999999999
Q ss_pred CHhHHhh
Q 000909 1211 TYAQLTH 1217 (1230)
Q Consensus 1211 t~~eLl~ 1217 (1230)
+++++.+
T Consensus 229 ~~~~~~~ 235 (243)
T TIGR02315 229 APSELDD 235 (243)
T ss_pred CHHHhCh
Confidence 9998743
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=379.78 Aligned_cols=221 Identities=28% Similarity=0.449 Sum_probs=188.2
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHH-hhhe
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWV-RREM 433 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~-r~~i 433 (1230)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999963 359999999999999999999999999999999999999999999999999988776554 5679
Q ss_pred EEEccCccccch-hHHHHHhcCCCCCCHHHH-------HHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHH
Q 000909 434 GLVSQEHALFGT-SIKDNIMFGKLDATMDEV-------IAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIA 505 (1230)
Q Consensus 434 ~~v~Q~~~l~~~-ti~~Ni~~~~~~~~~~~~-------~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 505 (1230)
+|++|++.+|++ |++||+.++........+ ........+.+.++.+ |++...+....+||||||||++||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 155 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIA 155 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHH
Confidence 999999999986 999999876421110000 0011122345566666 787778888899999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 506 RAIIKNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 506 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
||++.+|+++||||||++||+.+.+.+.+.|++.. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 99999999999999999999999999999998764 68999999999999866 99999999999999999988864
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=375.76 Aligned_cols=217 Identities=27% Similarity=0.413 Sum_probs=180.3
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHH-hhcc
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWY-RKHT 1070 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~l-R~~i 1070 (1230)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+ |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 578999999963 359999999999999999999999999999999999999999999999999988877654 6779
Q ss_pred eEEcccccCCcc-cHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccCC
Q 000909 1071 ALVSQEPVIYAG-NIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNP 1149 (1230)
Q Consensus 1071 ~~VpQdp~Lf~g-TIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p 1149 (1230)
+|+||++.+|.+ |+++|+.++.......+..+.+ .+.++.++ +++.........||||||||++||||++++|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARL-----ERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHH-----HHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999986 9999998764322111111111 11122221 1223334556689999999999999999999
Q ss_pred CEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHhh
Q 000909 1150 TILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTH 1217 (1230)
Q Consensus 1150 ~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~ 1217 (1230)
++|||||||++||+++...+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999999875 57899999999998765 79999999999999999988764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=399.45 Aligned_cols=214 Identities=29% Similarity=0.475 Sum_probs=191.7
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1070 (1230)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.+++...+|+++
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 3899999999963 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEcccccC-CcccHHHHhccCCCC----------CCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHH
Q 000909 1071 ALVSQEPVI-YAGNIRDNIVFGKLD----------ASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRI 1139 (1230)
Q Consensus 1071 ~~VpQdp~L-f~gTIreNl~~g~~~----------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 1139 (1230)
+||||++.+ |+.|++||+.++... .+.+.+.++++.+++.++.++ ...+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHH
Confidence 999999987 678999999876421 123457788888888766532 3457999999999
Q ss_pred HHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhHHhh
Q 000909 1140 AIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQLTH 1217 (1230)
Q Consensus 1140 alARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eLl~ 1217 (1230)
+|||||+++|+||||||||++||+.+...+.+.|+++. +++|+|+++|+++.+. .||||++|++|++++.|+|++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999999875 4889999999999995 589999999999999999999875
Q ss_pred c
Q 000909 1218 M 1218 (1230)
Q Consensus 1218 ~ 1218 (1230)
.
T Consensus 229 ~ 229 (402)
T PRK09536 229 A 229 (402)
T ss_pred c
Confidence 4
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=379.54 Aligned_cols=218 Identities=33% Similarity=0.503 Sum_probs=185.9
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC---CCCceEEECCeecCCCCHHHHh
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD---ADDGIVRIDGVDIRRLQLKWVR 430 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~---~~~G~i~~~g~~i~~~~~~~~r 430 (1230)
.|+++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999973 359999999999999999999999999999999999985 6999999999999888877888
Q ss_pred hheEEEccCccccchhHHHHHhcCCCC--C--CHHHHHHHHHHHhHHHHHHhCCCcc----cchhcCCCCCCChhHHHHH
Q 000909 431 REMGLVSQEHALFGTSIKDNIMFGKLD--A--TMDEVIAAATAANAHNFIRQLPEGY----ETKVGERGALLSGGQKQRI 502 (1230)
Q Consensus 431 ~~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~--~~~~~~~~~~~~~~~~~i~~l~~g~----~t~~~~~g~~LSgGqkqri 502 (1230)
+.++|++|++.+|+.|++||+.++... . ..++. ...+.+.++.+ |+ .+...+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEE-----EALVVDCLQKV--GLFEEVKDKLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHH-----HHHHHHHHHHc--CCChhhhHHhcCCcccCCHHHHHHH
Confidence 999999999999999999999875311 0 00111 11122233333 33 2446777889999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhh
Q 000909 503 AIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 503 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 581 (1230)
+||||++++|+++||||||++||+.+...+.+.|.+..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999987678999999999998865 999999999999999999998764
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=387.04 Aligned_cols=218 Identities=28% Similarity=0.454 Sum_probs=190.0
Q ss_pred cEEEEEEEEECCCCC---CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCC-hHHH
Q 000909 991 KIEMRRVDFAYPSRP---DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELD-VHWY 1066 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~---~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~-~~~l 1066 (1230)
-|+++||+++|++.. ++++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997421 246999999999999999999999999999999999999999999999999997654 4567
Q ss_pred hhcceEEccccc--CCcccHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHH
Q 000909 1067 RKHTALVSQEPV--IYAGNIRDNIVFGKL--DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQR 1138 (1230)
Q Consensus 1067 R~~i~~VpQdp~--Lf~gTIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 1138 (1230)
|++++|+||+|. +|..|+.+|+.++.. ..+ ++++.++++.+++.++..+. ..+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHA-----------PHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHH
Confidence 899999999984 777799999987521 122 34567777777887765543 35799999999
Q ss_pred HHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCcEEEEecCHhHHh
Q 000909 1139 IAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLT 1216 (1230)
Q Consensus 1139 lalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl 1216 (1230)
++|||||+++|++|||||||++||+.+...+.+.|++.. .++|+|+|||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999874 389999999999999889999999999999999999997
Q ss_pred hcc
Q 000909 1217 HMR 1219 (1230)
Q Consensus 1217 ~~~ 1219 (1230)
.+.
T Consensus 233 ~~~ 235 (280)
T PRK13633 233 KEV 235 (280)
T ss_pred cCh
Confidence 653
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=377.62 Aligned_cols=214 Identities=36% Similarity=0.532 Sum_probs=180.5
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC-----CCCCceEEECCeecCCCC--HH
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFY-----DADDGIVRIDGVDIRRLQ--LK 427 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~-----~~~~G~i~~~g~~i~~~~--~~ 427 (1230)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999964 35999999999999999999999999999999999999 999999999999998776 56
Q ss_pred HHhhheEEEccCccccchhHHHHHhcCCCCC--CH-HHHHHHHHHHhHHHHHHhCCCcccchhcCC--CCCCChhHHHHH
Q 000909 428 WVRREMGLVSQEHALFGTSIKDNIMFGKLDA--TM-DEVIAAATAANAHNFIRQLPEGYETKVGER--GALLSGGQKQRI 502 (1230)
Q Consensus 428 ~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~--~~-~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~--g~~LSgGqkqri 502 (1230)
.++++++|++|++.+|+.|++||+.++.... .. ++.. ..+.+.++.+ |++...... +.+||||||||+
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~LSgG~~qrv 150 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD-----ERVEEALRKA--ALWDEVKDRLHALGLSGGQQQRL 150 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHH-----HHHHHHHHHc--CCChHHhccCCcccCCHHHHHHH
Confidence 6788999999999999779999998753211 11 1111 1122334444 555444444 589999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHH
Q 000909 503 AIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDL 578 (1230)
Q Consensus 503 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 578 (1230)
+||||++.+|+++||||||++||+.++..+.+.|++..+.+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 9999999999999999999999999999999999987545899999999999865 999999999999999987653
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=384.81 Aligned_cols=219 Identities=31% Similarity=0.495 Sum_probs=186.6
Q ss_pred EEEEEEEEECCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCC--HHHHh
Q 000909 355 IEFEHVKFSYPSRP--DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQ--LKWVR 430 (1230)
Q Consensus 355 i~~~~v~~~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~--~~~~r 430 (1230)
|+++||+++|+... .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997421 146999999999999999999999999999999999999999999999999998754 45678
Q ss_pred hheEEEccCc--cccchhHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCccc--chhcCCCCCCChhHHHHHHH
Q 000909 431 REMGLVSQEH--ALFGTSIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYE--TKVGERGALLSGGQKQRIAI 504 (1230)
Q Consensus 431 ~~i~~v~Q~~--~l~~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~--t~~~~~g~~LSgGqkqri~i 504 (1230)
++||||||+| .+|+.|++|||.++.. ..+.++..+. +.+.++.+ |++ +.....+.+||||||||++|
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~~LSgGq~qrv~i 155 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR-----VKRAMNIV--GLDYEDYKDKSPFELSGGQKRRVAI 155 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHH-----HHHHHHHc--CCCchhhccCCcccCCHHHHHHHHH
Confidence 8999999998 5788899999998632 1233332222 22334444 664 55678889999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhh-ccCEEEEEeCCeEEEecChhHHHh
Q 000909 505 ARAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVR-NADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 505 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
||||+.+|++|||||||++||+.+...+.+.++++. .|+|+|+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 156 AraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 156 AGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999998864 3899999999999985 599999999999999999999865
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-42 Score=383.58 Aligned_cols=221 Identities=31% Similarity=0.473 Sum_probs=190.7
Q ss_pred ccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CCCeEEECCeecCC--
Q 000909 988 ISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV-----EQGSVRVDGMDVRE-- 1060 (1230)
Q Consensus 988 ~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~-- 1060 (1230)
..+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++..
T Consensus 16 ~~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 16 TEIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred CCceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 3467999999999963 3599999999999999999999999999999999999975 89999999999975
Q ss_pred CChHHHhhcceEEcccccCCcccHHHHhccCCC--CC--C----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCC
Q 000909 1061 LDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKL--DA--S----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLS 1132 (1230)
Q Consensus 1061 i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~--~~--s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LS 1132 (1230)
.+...+|++++|+||+|.+|..|++||+.++.. +. + ++++.++++..++.+++.. .....+.+||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS 165 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKD-------RLHEPGTGLS 165 (267)
T ss_pred cchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCC
Confidence 356678899999999999999999999986421 11 1 2345677777777554321 2234567899
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecC
Q 000909 1133 GGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGT 1211 (1230)
Q Consensus 1133 gGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt 1211 (1230)
||||||++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 166 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~ 245 (267)
T PRK14235 166 GGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGD 245 (267)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999988778899999999999965 79999999999999999
Q ss_pred HhHHhhc
Q 000909 1212 YAQLTHM 1218 (1230)
Q Consensus 1212 ~~eLl~~ 1218 (1230)
+++++..
T Consensus 246 ~~~~~~~ 252 (267)
T PRK14235 246 TEKMFTN 252 (267)
T ss_pred HHHHHhC
Confidence 9999854
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=375.72 Aligned_cols=223 Identities=34% Similarity=0.563 Sum_probs=190.4
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhhe
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREM 433 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i 433 (1230)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999963 3599999999999999999999999999999999999999999999999999887777888899
Q ss_pred EEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCccc-chhcCCCCCCChhHHHHHHHHHHhccCC
Q 000909 434 GLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYE-TKVGERGALLSGGQKQRIAIARAIIKNP 512 (1230)
Q Consensus 434 ~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri~iARal~~~~ 512 (1230)
+|++|++.+|+.|++||+.++....... ...+.+.++.+ |++ ........+||||||||++||||++++|
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~-------~~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEK-------NVDVEYYLSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcH-------HHHHHHHHHHc--CCCHHHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999998764211111 11223445554 564 3456778899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhhcCcHHHH
Q 000909 513 VILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRIDGHYAK 588 (1230)
Q Consensus 513 ~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 588 (1230)
+++||||||++||+.+.+.+.+.|++.. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++.......|..
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 229 (241)
T PRK14250 151 EVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTK 229 (241)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHH
Confidence 9999999999999999999999998864 38999999999999875 9999999999999999999987643333443
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=374.73 Aligned_cols=203 Identities=34% Similarity=0.570 Sum_probs=174.0
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcce
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1071 (1230)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++++.+. .+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 478999999963 469999999999999999999999999999999999999999999999999986543 577899
Q ss_pred EEcccccCCc-ccHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHH
Q 000909 1072 LVSQEPVIYA-GNIRDNIVFGKL--DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARA 1144 (1230)
Q Consensus 1072 ~VpQdp~Lf~-gTIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARA 1144 (1230)
|+||+|.+|. .|++||+.++.. ..+ ++++.++++..++.++.. ....+||||||||++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN-----------RYPHELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHHHHHH
Confidence 9999998886 599999986522 111 234555666666654433 3345799999999999999
Q ss_pred HccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCcEEEEec
Q 000909 1145 IIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERG 1210 (1230)
Q Consensus 1145 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~G 1210 (1230)
|+++|++|||||||++||+++.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999864 38899999999998765 7999999999999876
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=382.91 Aligned_cols=219 Identities=28% Similarity=0.429 Sum_probs=187.4
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CCCeEEECCeecC--CCCh
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV-----EQGSVRVDGMDVR--ELDV 1063 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~--~i~~ 1063 (1230)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999963 3599999999999999999999999999999999999987 4999999999997 4566
Q ss_pred HHHhhcceEEcccccCCcc-cHHHHhccCCC--C--CC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChh
Q 000909 1064 HWYRKHTALVSQEPVIYAG-NIRDNIVFGKL--D--AS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGG 1134 (1230)
Q Consensus 1064 ~~lR~~i~~VpQdp~Lf~g-TIreNl~~g~~--~--~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG 1134 (1230)
..+|++++|+||+|.+|.+ |++||+.++.. . .+ ++++.++++..++.+.+.. .......+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD-------RLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh-------hhccChhhCCHH
Confidence 6788999999999999976 99999986421 1 11 2345566666665443321 234456789999
Q ss_pred HHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHh
Q 000909 1135 QRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYA 1213 (1230)
Q Consensus 1135 QrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~ 1213 (1230)
||||++||||++++|++|||||||++||+++.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998778999999999999865 8999999999999999999
Q ss_pred HHhhcc
Q 000909 1214 QLTHMR 1219 (1230)
Q Consensus 1214 eLl~~~ 1219 (1230)
++++.+
T Consensus 234 ~~~~~~ 239 (253)
T PRK14267 234 KVFENP 239 (253)
T ss_pred HHHhCC
Confidence 998653
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-42 Score=395.24 Aligned_cols=213 Identities=29% Similarity=0.456 Sum_probs=185.8
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1070 (1230)
.|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+.+.+. .|+++
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 3889999999963 359999999999999999999999999999999999999999999999999987654 46789
Q ss_pred eEEcccccCCc-ccHHHHhccCCC------CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHH
Q 000909 1071 ALVSQEPVIYA-GNIRDNIVFGKL------DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRI 1139 (1230)
Q Consensus 1071 ~~VpQdp~Lf~-gTIreNl~~g~~------~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 1139 (1230)
+||||++.+|. .|++||+.++.. ..+ ++++.++++..++.++.++ ....||||||||+
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGq~QRv 145 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR-----------YPAQLSGGQKQRV 145 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHH
Confidence 99999999997 499999998632 122 2345566677766554433 3457999999999
Q ss_pred HHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHh
Q 000909 1140 AIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLT 1216 (1230)
Q Consensus 1140 alARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl 1216 (1230)
+|||||+++|++||||||||+||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+|+++.
T Consensus 146 alArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 146 ALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999998754 7899999999998765 7999999999999999999998
Q ss_pred hcc
Q 000909 1217 HMR 1219 (1230)
Q Consensus 1217 ~~~ 1219 (1230)
+++
T Consensus 226 ~~p 228 (353)
T PRK10851 226 REP 228 (353)
T ss_pred hCc
Confidence 763
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=386.21 Aligned_cols=212 Identities=29% Similarity=0.446 Sum_probs=181.9
Q ss_pred EEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHH----hh
Q 000909 993 EMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWY----RK 1068 (1230)
Q Consensus 993 ~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~l----R~ 1068 (1230)
.++||+++|. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+...+ ++
T Consensus 26 ~~~~~~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTG---QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcC---CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 4567777775 3358999999999999999999999999999999999999999999999999988776543 46
Q ss_pred cceEEcccccCCc-ccHHHHhccCCC--CC----CHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHH
Q 000909 1069 HTALVSQEPVIYA-GNIRDNIVFGKL--DA----SENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAI 1141 (1230)
Q Consensus 1069 ~i~~VpQdp~Lf~-gTIreNl~~g~~--~~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlal 1141 (1230)
+++|+||++.+|. .|++||+.++.. .. .++++.++++..++.+++...| .+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence 8999999999885 699999986421 11 1244666777777766654433 4799999999999
Q ss_pred HHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHhhc
Q 000909 1142 ARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1142 ARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1218 (1230)
|||++++|+||||||||++||+.+.+.+.+.|++.. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999999874 37999999999998864 799999999999999999999865
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-42 Score=385.79 Aligned_cols=219 Identities=29% Similarity=0.482 Sum_probs=186.1
Q ss_pred EEEEEEEEECCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCC----CCHHH
Q 000909 355 IEFEHVKFSYPSRP--DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRR----LQLKW 428 (1230)
Q Consensus 355 i~~~~v~~~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~----~~~~~ 428 (1230)
|+++||+|+|+... .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997421 1359999999999999999999999999999999999999999999999999863 33567
Q ss_pred HhhheEEEccCc--cccchhHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCccc-chhcCCCCCCChhHHHHHH
Q 000909 429 VRREMGLVSQEH--ALFGTSIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYE-TKVGERGALLSGGQKQRIA 503 (1230)
Q Consensus 429 ~r~~i~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri~ 503 (1230)
+|+.+|||+|+| .+|+.|+.||+.|+... .+.++..+ .+.+.++.+ |++ ....+...+||||||||++
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~LSgGqkqrva 154 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEK-----IAAEKLEMV--GLADEFWEKSPFELSGGQMRRVA 154 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhhccCCcccCCHHHHHHHH
Confidence 888999999998 78889999999987432 22222221 123344444 664 3457788899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-ccCEEEEEeCCeEEEecChhHHHh
Q 000909 504 IARAIIKNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVR-NADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 504 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
|||||+.+|+++||||||++||+.+...+.+.++++. +|+|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 155 iA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 155 IAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 9999999999999999999999999999999998764 5899999999999985 499999999999999999999865
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-42 Score=367.56 Aligned_cols=200 Identities=36% Similarity=0.576 Sum_probs=181.8
Q ss_pred EEEEEEEEECCCCCC--cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhc
Q 000909 992 IEMRRVDFAYPSRPD--ALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKH 1069 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~--~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~ 1069 (1230)
|+++||+++|++..+ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 579999999964311 3699999999999999999999999999999999999999999999999 6
Q ss_pred ceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccCC
Q 000909 1070 TALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNP 1149 (1230)
Q Consensus 1070 i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p 1149 (1230)
++|+||+|.+|++|++||+.++. ..++++.+++++.+++.+++..+|.|+++.+++.+.+||+|||||++||||++.+|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGK-PFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCC-CcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999864 34566788888999999999999999999999999999999999999999999999
Q ss_pred CEEEeecccCCcCHHHHHHHHH-HHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCcE
Q 000909 1150 TILLLDEATSALDVQSEQVVQE-ALDRIM-MGRTTIVVAHRLNTIKKLDSIALVADGR 1205 (1230)
Q Consensus 1150 ~ILlLDEaTSaLD~~te~~I~~-~l~~~~-~~~TvI~IaHrl~ti~~~D~I~vl~~G~ 1205 (1230)
+++||||||++||+++.+.+.+ .+++.. +++|+|++||+++.+..||+|++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999888877 566553 4789999999999999999999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=392.62 Aligned_cols=221 Identities=33% Similarity=0.489 Sum_probs=188.7
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhhe
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREM 433 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i 433 (1230)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+. .+++|
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 3789999999963 359999999999999999999999999999999999999999999999999987654 35689
Q ss_pred EEEccCccccch-hHHHHHhcCCCC------CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHH
Q 000909 434 GLVSQEHALFGT-SIKDNIMFGKLD------ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIAR 506 (1230)
Q Consensus 434 ~~v~Q~~~l~~~-ti~~Ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 506 (1230)
+||+|++.+|+. |++||+.|+... .+.++.. ..+.+.++.+ |++........+||||||||++|||
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~L~~~~~~~~~~LSgGq~QRvalAr 149 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIK-----AKVTQLLEMV--QLAHLADRYPAQLSGGQKQRVALAR 149 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHH-----HHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHH
Confidence 999999999975 999999987431 1222211 1233445555 6666677888899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhhcC
Q 000909 507 AIIKNPVILLLDEATSALDSESETLVQNALDQASL--GRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRID 583 (1230)
Q Consensus 507 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 583 (1230)
||+.+|++||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++.
T Consensus 150 AL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p~ 229 (353)
T PRK10851 150 ALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPA 229 (353)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999988643 7899999999999866 99999999999999999999987544
Q ss_pred cHH
Q 000909 584 GHY 586 (1230)
Q Consensus 584 ~~~ 586 (1230)
..|
T Consensus 230 ~~~ 232 (353)
T PRK10851 230 TRF 232 (353)
T ss_pred chH
Confidence 333
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-42 Score=386.91 Aligned_cols=216 Identities=22% Similarity=0.412 Sum_probs=183.4
Q ss_pred EEEEEEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCC---------
Q 000909 992 IEMRRVDFAYPSRP--DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRE--------- 1060 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~--------- 1060 (1230)
|+++||+++|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 89999999997432 1359999999999999999999999999999999999999999999999987632
Q ss_pred ---------------CChHHHhhcceEEcccc--cCCcccHHHHhccCCC--CCCHH----HHHHHHHHhchH-HHHHhc
Q 000909 1061 ---------------LDVHWYRKHTALVSQEP--VIYAGNIRDNIVFGKL--DASEN----EVVEAARAANAH-EFISSL 1116 (1230)
Q Consensus 1061 ---------------i~~~~lR~~i~~VpQdp--~Lf~gTIreNl~~g~~--~~sd~----ei~~al~~a~l~-~~i~~l 1116 (1230)
.+...+|++++||||+| .+|..|++|||.++.. +.+.+ ++.++++.+++. ++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~---- 158 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY---- 158 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh----
Confidence 13467889999999986 6888999999987632 23333 345555555553 22
Q ss_pred cccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-h
Q 000909 1117 KDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIK-K 1194 (1230)
Q Consensus 1117 p~gldt~vge~G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~ 1194 (1230)
......+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .|+|+|+|||+++.+. .
T Consensus 159 -------~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 159 -------LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred -------hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 234567899999999999999999999999999999999999999999998874 4899999999999875 5
Q ss_pred cCEEEEEeCcEEEEecCHhHHhhc
Q 000909 1195 LDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1195 ~D~I~vl~~G~Ive~Gt~~eLl~~ 1218 (1230)
||||++|++|++++.|+++++.++
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcC
Confidence 899999999999999999998765
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-42 Score=384.12 Aligned_cols=215 Identities=28% Similarity=0.451 Sum_probs=188.3
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcce
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1071 (1230)
++++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...++++++
T Consensus 4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 7899999999632 35999999999999999999999999999999999999999999999999998878888899999
Q ss_pred EEcccc--cCCcccHHHHhccCCC--CCCH----HHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHH
Q 000909 1072 LVSQEP--VIYAGNIRDNIVFGKL--DASE----NEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIAR 1143 (1230)
Q Consensus 1072 ~VpQdp--~Lf~gTIreNl~~g~~--~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalAR 1143 (1230)
||||+| .+|+.|+++|+.++.. ..+. +.+.++++..++.++..+ ....||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDR-----------VPHHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcC-----------CcccCCHHHHHHHHHHH
Confidence 999998 4788899999986431 2222 345666777777665443 34579999999999999
Q ss_pred HHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhHHhhcc
Q 000909 1144 AIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQLTHMR 1219 (1230)
Q Consensus 1144 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eLl~~~ 1219 (1230)
||+.+|++|||||||++||+.+.+.+.+.+++..+ ++|+|++||+++.+. .||||++|++|++++.|+++++++..
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 229 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcCH
Confidence 99999999999999999999999999999998753 789999999999985 68999999999999999999998653
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-42 Score=383.08 Aligned_cols=217 Identities=24% Similarity=0.521 Sum_probs=188.0
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1070 (1230)
.|+++|++++|++. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 48999999999632 34699999999999999999999999999999999999999999999999999888888899999
Q ss_pred eEEcccc--cCCcccHHHHhccCCC--CCCHH----HHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHH
Q 000909 1071 ALVSQEP--VIYAGNIRDNIVFGKL--DASEN----EVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIA 1142 (1230)
Q Consensus 1071 ~~VpQdp--~Lf~gTIreNl~~g~~--~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalA 1142 (1230)
+|+||+| .++..|++||+.++.. ..+.+ .+.++++..++.++.. ....+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLD-----------KEPQNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CCcccCCHHHHHHHHHH
Confidence 9999998 4567899999987521 12333 2445566666655543 34468999999999999
Q ss_pred HHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCcEEEEecCHhHHhhcc
Q 000909 1143 RAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMR 1219 (1230)
Q Consensus 1143 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~ 1219 (1230)
|||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+..
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 233 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcCH
Confidence 999999999999999999999999999999998753 48999999999999889999999999999999999887643
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=376.48 Aligned_cols=210 Identities=26% Similarity=0.406 Sum_probs=178.9
Q ss_pred cEEEEEEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHH---H
Q 000909 991 KIEMRRVDFAYPSRP-DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW---Y 1066 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---l 1066 (1230)
-++++||+++|+++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999997422 146999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-hcceEEcccccCCcc-cHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHH
Q 000909 1067 R-KHTALVSQEPVIYAG-NIRDNIVFGKL--DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQR 1138 (1230)
Q Consensus 1067 R-~~i~~VpQdp~Lf~g-TIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 1138 (1230)
| ++++|+||+|.+|.. |++||+.++.. ..+ ++++.++++..++.++ ......+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHR-----------ANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHH
Confidence 3 679999999998875 99999976311 112 2334555555555433 334456899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCcEEEEecC
Q 000909 1139 IAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKKLDSIALVADGRVVERGT 1211 (1230)
Q Consensus 1139 lalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt 1211 (1230)
++||||++.+|+||||||||++||+++...+.+.|++.. +|+|+|+|||+++.+..+|++++|++|+|++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999874 4899999999999999999999999999998775
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=383.45 Aligned_cols=217 Identities=26% Similarity=0.475 Sum_probs=190.3
Q ss_pred CcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCC---CeEEECCeecCCCChHHH
Q 000909 990 GKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQ---GSVRVDGMDVRELDVHWY 1066 (1230)
Q Consensus 990 g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~---G~I~idG~di~~i~~~~l 1066 (1230)
+.|+++|++++|++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++ |+|.+||.++...+...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 359999999999642 2359999999999999999999999999999999999999987 899999999988887788
Q ss_pred hhcceEEcccc--cCCcccHHHHhccCCC--CCCH----HHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHH
Q 000909 1067 RKHTALVSQEP--VIYAGNIRDNIVFGKL--DASE----NEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQR 1138 (1230)
Q Consensus 1067 R~~i~~VpQdp--~Lf~gTIreNl~~g~~--~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 1138 (1230)
|++++|+||+| .+++.|++|||.++.. ..+. +++.++++..++.++.... ..+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSE-----------PANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCC-----------cccCCHHHHHH
Confidence 99999999998 4678899999987532 2333 3356677777776654433 35899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCcEEEEecCHhHHh
Q 000909 1139 IAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLT 1216 (1230)
Q Consensus 1139 lalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl 1216 (1230)
++|||||+++|++|||||||++||+.+...+.+.|++..+ ++|||++||+++.+..||+|++|++|++++.|++++++
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999998753 78999999999999889999999999999999999887
Q ss_pred hc
Q 000909 1217 HM 1218 (1230)
Q Consensus 1217 ~~ 1218 (1230)
..
T Consensus 232 ~~ 233 (282)
T PRK13640 232 SK 233 (282)
T ss_pred cC
Confidence 53
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=376.45 Aligned_cols=217 Identities=32% Similarity=0.464 Sum_probs=185.5
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-----CceEEECCeecCCC--CHH
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAD-----DGIVRIDGVDIRRL--QLK 427 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~i~~~g~~i~~~--~~~ 427 (1230)
|+++||+++|++ ..+++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999973 35999999999999999999999999999999999999998 99999999998763 355
Q ss_pred HHhhheEEEccCccccchhHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHHhCCCccc----chhcCCCCCCChhHHH
Q 000909 428 WVRREMGLVSQEHALFGTSIKDNIMFGKLD---ATMDEVIAAATAANAHNFIRQLPEGYE----TKVGERGALLSGGQKQ 500 (1230)
Q Consensus 428 ~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~----t~~~~~g~~LSgGqkq 500 (1230)
.+++.++|+||++.+|+.|++||+.++... .+.++..+ .+.+.++.+ |+. ........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDE-----IVEESLKKA--ALWDEVKDRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHH-----HHHHHHHHc--CCCcchhhHhhCCcccCCHHHHH
Confidence 678899999999999999999999875311 11122111 123334444 554 5567788899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHH
Q 000909 501 RIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLI 579 (1230)
Q Consensus 501 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 579 (1230)
|++||||++.+|+++||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999865 9999999999999999999987
Q ss_pred hh
Q 000909 580 NR 581 (1230)
Q Consensus 580 ~~ 581 (1230)
..
T Consensus 232 ~~ 233 (247)
T TIGR00972 232 TN 233 (247)
T ss_pred hC
Confidence 64
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-42 Score=394.45 Aligned_cols=213 Identities=32% Similarity=0.530 Sum_probs=188.8
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1070 (1230)
.|+++|++++|++ .++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. ++++
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5999999999963 3599999999999999999999999999999999999999999999999999887764 5789
Q ss_pred eEEcccccCCcc-cHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHH
Q 000909 1071 ALVSQEPVIYAG-NIRDNIVFGKL--DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIAR 1143 (1230)
Q Consensus 1071 ~~VpQdp~Lf~g-TIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalAR 1143 (1230)
+||+|++.+|.. ||+|||.|+.. ..+ ++++.++++..++.++.++.| .+||||||||+||||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999965 99999998632 122 235667777778877665544 479999999999999
Q ss_pred HHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhHHhhcc
Q 000909 1144 AIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQLTHMR 1219 (1230)
Q Consensus 1144 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eLl~~~ 1219 (1230)
||+++|++||||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+. .||+|++|++|+|++.|+|+++.++.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999999998754 789999999999875 58999999999999999999998763
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-42 Score=376.37 Aligned_cols=216 Identities=30% Similarity=0.517 Sum_probs=182.6
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcce
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1071 (1230)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+... +++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 789999999963 46999999999999999999999999999999999999999999999999998776544 46899
Q ss_pred EEcccccC-CcccHHHHhccCCC--CCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccC
Q 000909 1072 LVSQEPVI-YAGNIRDNIVFGKL--DASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRN 1148 (1230)
Q Consensus 1072 ~VpQdp~L-f~gTIreNl~~g~~--~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~ 1148 (1230)
|+||++.+ +..|+++|+.++.. +.+.++..+ .+.++++.+ |++........+||||||||++||||++++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999987 56799999976421 122221111 112333332 444444556678999999999999999999
Q ss_pred CCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCcEEEEecCHhHHhhc
Q 000909 1149 PTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1149 p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~ 1218 (1230)
|+||||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999875 48999999999999988999999999999999999999875
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-42 Score=379.98 Aligned_cols=218 Identities=29% Similarity=0.418 Sum_probs=188.3
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CCCeEEECCeecCCCChHH
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV-----EQGSVRVDGMDVRELDVHW 1065 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i~~~~ 1065 (1230)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999963 3599999999999999999999999999999999999974 6999999999999888888
Q ss_pred HhhcceEEcccccCC-cccHHHHhccCCC--C--CC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHH
Q 000909 1066 YRKHTALVSQEPVIY-AGNIRDNIVFGKL--D--AS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQR 1136 (1230)
Q Consensus 1066 lR~~i~~VpQdp~Lf-~gTIreNl~~g~~--~--~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 1136 (1230)
+|++++|+||+|.+| +.|++||+.++.. . .. ++++.++++..++.+.+.. .++ ....+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~----~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKD---RLD----APAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhh---hhc----CCcccCCHHHH
Confidence 999999999999755 6799999976421 1 11 2456677777776543321 223 34567999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhHH
Q 000909 1137 QRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQL 1215 (1230)
Q Consensus 1137 QrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eL 1215 (1230)
||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 999999999999999999999999999999999999999877899999999999985 5899999999999999999999
Q ss_pred hhc
Q 000909 1216 THM 1218 (1230)
Q Consensus 1216 l~~ 1218 (1230)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14247 233 FTN 235 (250)
T ss_pred HcC
Confidence 865
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=381.52 Aligned_cols=219 Identities=28% Similarity=0.413 Sum_probs=189.7
Q ss_pred CcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCCCeEEECCeecCC--CC
Q 000909 990 GKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD-----VEQGSVRVDGMDVRE--LD 1062 (1230)
Q Consensus 990 g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~ 1062 (1230)
..|+++||+++|++ +++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 46999999999963 469999999999999999999999999999999999997 579999999999864 34
Q ss_pred hHHHhhcceEEcccccCCcccHHHHhccCCC--CC-C----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhH
Q 000909 1063 VHWYRKHTALVSQEPVIYAGNIRDNIVFGKL--DA-S----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQ 1135 (1230)
Q Consensus 1063 ~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~--~~-s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 1135 (1230)
...+|+.++||||+|.+|..|++||+.++.. .. + ++++.++++..++.+++. +..+..+..|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCHHH
Confidence 6678899999999999999999999987521 11 1 234556677777654442 23456677899999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhH
Q 000909 1136 RQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQ 1214 (1230)
Q Consensus 1136 rQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~e 1214 (1230)
|||++||||++++|++|||||||++||+.+...+.+.|++..++.|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998778999999999998854 89999999999999999999
Q ss_pred Hhhc
Q 000909 1215 LTHM 1218 (1230)
Q Consensus 1215 Ll~~ 1218 (1230)
+.+.
T Consensus 249 ~~~~ 252 (267)
T PRK14237 249 IFTN 252 (267)
T ss_pred HhcC
Confidence 9865
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=383.06 Aligned_cols=219 Identities=29% Similarity=0.481 Sum_probs=186.2
Q ss_pred EEEEEEEEECCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCC----CCHHH
Q 000909 355 IEFEHVKFSYPSRP--DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRR----LQLKW 428 (1230)
Q Consensus 355 i~~~~v~~~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~----~~~~~ 428 (1230)
|+++|++|+|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997421 1459999999999999999999999999999999999999999999999999863 34556
Q ss_pred HhhheEEEccCc--cccchhHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCccc-chhcCCCCCCChhHHHHHH
Q 000909 429 VRREMGLVSQEH--ALFGTSIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYE-TKVGERGALLSGGQKQRIA 503 (1230)
Q Consensus 429 ~r~~i~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri~ 503 (1230)
+++.||||+|+| .+|+.|++|||.++... .+.++..+ .+.+.++.+ |++ ......+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQ-----KAREMIELV--GLPEELLARSPFELSGGQMRRVA 155 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCChhhhhCCcccCCHHHHHHHH
Confidence 788999999998 68888999999987422 22332222 123445555 665 3457778899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 504 IARAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 504 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
|||||+.+|++|||||||++||+.+...+.+.++++. .|.|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999998864 38999999999999865 99999999999999999998865
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=394.35 Aligned_cols=214 Identities=30% Similarity=0.482 Sum_probs=186.7
Q ss_pred CcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCC--CeEEECCeecCCCChHHHh
Q 000909 990 GKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQ--GSVRVDGMDVRELDVHWYR 1067 (1230)
Q Consensus 990 g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~--G~I~idG~di~~i~~~~lR 1067 (1230)
|.|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++ |+|.+||.++.+.+. .+
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 67999999999963 359999999999999999999999999999999999999999 999999999987765 36
Q ss_pred hcceEEcccccCCcc-cHHHHhccCCC--CCCH----HHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHH
Q 000909 1068 KHTALVSQEPVIYAG-NIRDNIVFGKL--DASE----NEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIA 1140 (1230)
Q Consensus 1068 ~~i~~VpQdp~Lf~g-TIreNl~~g~~--~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 1140 (1230)
++++||+|++.+|.. |++|||.|+.. ..+. +++.++++..++.++..+ ...+||||||||+|
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~-----------~~~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAH-----------LPAQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhC-----------ChhhCCHHHHHHHH
Confidence 789999999999975 99999987532 2232 345556666666555443 34589999999999
Q ss_pred HHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC---CCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhHHh
Q 000909 1141 IARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM---GRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQLT 1216 (1230)
Q Consensus 1141 lARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~---~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eLl 1216 (1230)
|||||+++|++||||||||+||+.+...+.+.|++..+ |.|+|+|||+++.+. .||+|+||++|++++.|+|+++.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999988654 689999999999875 58999999999999999999998
Q ss_pred hcc
Q 000909 1217 HMR 1219 (1230)
Q Consensus 1217 ~~~ 1219 (1230)
++.
T Consensus 228 ~~p 230 (362)
T TIGR03258 228 DAP 230 (362)
T ss_pred hCc
Confidence 763
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=392.68 Aligned_cols=222 Identities=31% Similarity=0.470 Sum_probs=190.8
Q ss_pred cccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC--ceEEECCeecCCCCHHHH
Q 000909 352 RGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADD--GIVRIDGVDIRRLQLKWV 429 (1230)
Q Consensus 352 ~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~--G~i~~~g~~i~~~~~~~~ 429 (1230)
.+.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++.+.+. .
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~ 77 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--H 77 (362)
T ss_pred ceEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--H
Confidence 367999999999963 359999999999999999999999999999999999999999 999999999987665 3
Q ss_pred hhheEEEccCccccch-hHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHH
Q 000909 430 RREMGLVSQEHALFGT-SIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIAR 506 (1230)
Q Consensus 430 r~~i~~v~Q~~~l~~~-ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 506 (1230)
++.|+||+|++.+|+. ||+|||.|+... .+.++..+ .+.+.++.+ |++........+||||||||++|||
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~~~~~~LSgGq~QRvaLAR 150 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE-----RVADALKLV--GLGDAAAHLPAQLSGGMQQRIAIAR 150 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhc--CCCchhhCChhhCCHHHHHHHHHHH
Confidence 5689999999999976 999999986421 12222221 233445555 7777778888999999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC---CCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhhc
Q 000909 507 AIIKNPVILLLDEATSALDSESETLVQNALDQASL---GRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRI 582 (1230)
Q Consensus 507 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~---~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 582 (1230)
||+.+|++||||||||+||+.+...+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|++++.|+++++.+++
T Consensus 151 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p 230 (362)
T TIGR03258 151 AIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230 (362)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999999987643 7899999999999865 9999999999999999999998754
Q ss_pred CcH
Q 000909 583 DGH 585 (1230)
Q Consensus 583 ~~~ 585 (1230)
...
T Consensus 231 ~~~ 233 (362)
T TIGR03258 231 ADG 233 (362)
T ss_pred CcH
Confidence 333
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=383.88 Aligned_cols=221 Identities=31% Similarity=0.532 Sum_probs=188.8
Q ss_pred cEEEEEEEEECCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCC----CHH
Q 000909 354 EIEFEHVKFSYPSRP--DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRL----QLK 427 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~----~~~ 427 (1230)
.|+++||+|+|++.. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996422 23699999999999999999999999999999999999999999999999999653 345
Q ss_pred HHhhheEEEccCc--cccchhHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCcccc-hhcCCCCCCChhHHHHH
Q 000909 428 WVRREMGLVSQEH--ALFGTSIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYET-KVGERGALLSGGQKQRI 502 (1230)
Q Consensus 428 ~~r~~i~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgGqkqri 502 (1230)
.+|++||||+|+| .+|+.|++|||.++... .+.++..+ .+.+.++.+ |+++ .....+.+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKN-----YAHRLLMDL--GFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHHc--CCChhhhhCCcccCCHHHHHHH
Confidence 6888999999997 58888999999986422 22223222 233456665 8874 56778899999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhh-ccCEEEEEeCCeEEEecChhHHH
Q 000909 503 AIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVR-NADLIAVVDNGCLVEIGTHNDLI 579 (1230)
Q Consensus 503 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 579 (1230)
+|||||+.+|+++||||||++||+.+...+.+.++++. .|+|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999864 4899999999999985 59999999999999999999987
Q ss_pred hh
Q 000909 580 NR 581 (1230)
Q Consensus 580 ~~ 581 (1230)
+.
T Consensus 235 ~~ 236 (286)
T PRK13646 235 KD 236 (286)
T ss_pred hC
Confidence 63
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=382.10 Aligned_cols=220 Identities=31% Similarity=0.499 Sum_probs=190.3
Q ss_pred cCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CCCeEEECCeecCC--C
Q 000909 989 SGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV-----EQGSVRVDGMDVRE--L 1061 (1230)
Q Consensus 989 ~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i 1061 (1230)
.+.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|+|+++| ++|+|.+||.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 456999999999963 3599999999999999999999999999999999999984 89999999999875 4
Q ss_pred ChHHHhhcceEEcccccCCcccHHHHhccCCC--CC-C----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChh
Q 000909 1062 DVHWYRKHTALVSQEPVIYAGNIRDNIVFGKL--DA-S----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGG 1134 (1230)
Q Consensus 1062 ~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~--~~-s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG 1134 (1230)
+...+|++++|+||++.+|++|++||+.++.. .. . ++++.++++.+++.+.+.. ..+..+..||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD-------RLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHH-------HhhCCcccCCHH
Confidence 45678999999999999999999999986421 11 1 2346666777776554332 334567789999
Q ss_pred HHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHh
Q 000909 1135 QRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYA 1213 (1230)
Q Consensus 1135 QrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~ 1213 (1230)
||||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 99999999999999999999999999999999999999999877899999999999986 48999999999999999999
Q ss_pred HHhhc
Q 000909 1214 QLTHM 1218 (1230)
Q Consensus 1214 eLl~~ 1218 (1230)
++.+.
T Consensus 253 ~~~~~ 257 (272)
T PRK14236 253 TLFTS 257 (272)
T ss_pred HHhcC
Confidence 99865
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-42 Score=369.65 Aligned_cols=203 Identities=25% Similarity=0.455 Sum_probs=177.7
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcce
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1071 (1230)
|+++||+++|++ .++|+|+||++++| ++||+||||||||||+++|.|+++|++|+|.++|.++.+.+ ..+|++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 579999999963 36999999999999 99999999999999999999999999999999999998777 77899999
Q ss_pred EEcccccCCcc-cHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHH
Q 000909 1072 LVSQEPVIYAG-NIRDNIVFGKL--DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARA 1144 (1230)
Q Consensus 1072 ~VpQdp~Lf~g-TIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARA 1144 (1230)
|+||+|.+|.+ |++||+.+... +.+ ++++.++++..++.++.+ + ...+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~----~~~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-------K----KIGSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-------C----chhhCCHHHHHHHHHHHH
Confidence 99999999886 99999975311 111 345666777777765432 2 335799999999999999
Q ss_pred HccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCcEEEEec
Q 000909 1145 IIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRVVERG 1210 (1230)
Q Consensus 1145 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~G 1210 (1230)
++++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999998778999999999999865 7999999999999875
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=393.02 Aligned_cols=220 Identities=31% Similarity=0.484 Sum_probs=188.0
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhh
Q 000909 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRRE 432 (1230)
Q Consensus 353 ~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~ 432 (1230)
..|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...++. ++.
T Consensus 13 ~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ 87 (375)
T PRK09452 13 PLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRH 87 (375)
T ss_pred ceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCC
Confidence 35999999999963 3589999999999999999999999999999999999999999999999999877654 468
Q ss_pred eEEEccCccccch-hHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhc
Q 000909 433 MGLVSQEHALFGT-SIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAII 509 (1230)
Q Consensus 433 i~~v~Q~~~l~~~-ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 509 (1230)
||||+|++.+|+. ||+|||.|+... .+..+..+ .+.+.++.+ |++........+||||||||++|||||+
T Consensus 88 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~p~~LSgGq~QRVaLARaL~ 160 (375)
T PRK09452 88 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITP-----RVMEALRMV--QLEEFAQRKPHQLSGGQQQRVAIARAVV 160 (375)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHh
Confidence 9999999999966 999999987431 12222111 122334444 6666677778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhhcCc
Q 000909 510 KNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRIDG 584 (1230)
Q Consensus 510 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 584 (1230)
.+|++||||||||+||+.++..+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|++++.|++++++.++..
T Consensus 161 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~~ 238 (375)
T PRK09452 161 NKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKN 238 (375)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999998864 38999999999999765 999999999999999999999875443
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=375.40 Aligned_cols=215 Identities=32% Similarity=0.505 Sum_probs=184.1
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheE
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999963 459999999999999999999999999999999999999999999999999876543 256899
Q ss_pred EEccCccccc-hhHHHHHhcCCCCC------CHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHH
Q 000909 435 LVSQEHALFG-TSIKDNIMFGKLDA------TMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARA 507 (1230)
Q Consensus 435 ~v~Q~~~l~~-~ti~~Ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 507 (1230)
|++|+|.+|. .|++||+.++.... ..++. ...+.+.++.+ |++........+||||||||++||||
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~a 150 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEI-----RAKVHELLKLV--QLDWLADRYPAQLSGGQRQRVALARA 150 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHH-----HHHHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 9999999986 59999999763211 11111 11233445555 67666777888999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhh
Q 000909 508 IIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 508 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 581 (1230)
|+.+|+++||||||++||+++.+.+.+.|.+.. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 151 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 151 LAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 999999999999999999999999999998864 37899999999998765 999999999999999999998753
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=389.13 Aligned_cols=224 Identities=27% Similarity=0.382 Sum_probs=186.9
Q ss_pred cEEEEEEEEECCCCC----------CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCC
Q 000909 991 KIEMRRVDFAYPSRP----------DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRE 1060 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~----------~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~ 1060 (1230)
-|+++||+++|+.+. ..++++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.|+.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996321 2469999999999999999999999999999999999999999999999999998
Q ss_pred CChH---HHhhcceEEcccc--cCC-cccHHHHhccCC----CCCCHHH----HHHHHHHhchHHHHHhccccccccccC
Q 000909 1061 LDVH---WYRKHTALVSQEP--VIY-AGNIRDNIVFGK----LDASENE----VVEAARAANAHEFISSLKDGYETECGE 1126 (1230)
Q Consensus 1061 i~~~---~lR~~i~~VpQdp--~Lf-~gTIreNl~~g~----~~~sd~e----i~~al~~a~l~~~i~~lp~gldt~vge 1126 (1230)
++.. .+|++++||+|+| .|+ ..||.+|+.++. +..+.++ +.++++.+++.+ .....
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~----------~~~~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP----------NLINR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh----------HHhcC
Confidence 8754 4678999999999 477 479999986431 1233333 334455555421 11234
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeC
Q 000909 1127 RGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKK-LDSIALVAD 1203 (1230)
Q Consensus 1127 ~G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~ 1203 (1230)
...+||||||||++|||||+.+|++||+||||++||..+...|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 4568999999999999999999999999999999999999999999998753 8899999999999975 899999999
Q ss_pred cEEEEecCHhHHhhc-ccccHH
Q 000909 1204 GRVVERGTYAQLTHM-RGAFFN 1224 (1230)
Q Consensus 1204 G~Ive~Gt~~eLl~~-~g~y~~ 1224 (1230)
|+|+|.|++++++++ ...|.+
T Consensus 238 G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 238 GHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CEEEEEcCHHHHHcCCCCHHHH
Confidence 999999999999876 334544
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=370.98 Aligned_cols=207 Identities=28% Similarity=0.483 Sum_probs=177.3
Q ss_pred EEEEEEEEECCCCCC-cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcc
Q 000909 992 IEMRRVDFAYPSRPD-ALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~-~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1070 (1230)
|+++||+++|+++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 789999999974311 269999999999999999999999999999999999999999999999999976 456778999
Q ss_pred eEEcccccCCcc-cHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHH
Q 000909 1071 ALVSQEPVIYAG-NIRDNIVFGKL--DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIAR 1143 (1230)
Q Consensus 1071 ~~VpQdp~Lf~g-TIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalAR 1143 (1230)
+|+||+|.+|.+ |++||+.+... ..+ ++++.++++..++.+.. .....+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELL-----------DRRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hhhhhhcCHHHHHHHHHHH
Confidence 999999999985 99999975321 112 23455566666665443 3345689999999999999
Q ss_pred HHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCcEEEEec
Q 000909 1144 AIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERG 1210 (1230)
Q Consensus 1144 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~G 1210 (1230)
|++++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999874 48999999999998865 7999999999998865
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-42 Score=369.52 Aligned_cols=199 Identities=26% Similarity=0.506 Sum_probs=173.5
Q ss_pred EEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcceE
Q 000909 993 EMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTAL 1072 (1230)
Q Consensus 993 ~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~ 1072 (1230)
+++||+++|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. ...|++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 468999999631 469999999999999999999999999999999999999999999999999864 456788999
Q ss_pred Ecccc--cCCcccHHHHhccCCCC--CCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccC
Q 000909 1073 VSQEP--VIYAGNIRDNIVFGKLD--ASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRN 1148 (1230)
Q Consensus 1073 VpQdp--~Lf~gTIreNl~~g~~~--~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~ 1148 (1230)
+||+| .+|..|++||+.++.+. ..++++.++++..++.++..+. ...||||||||++||||++++
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERH-----------PLSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCC-----------chhCCHHHHHHHHHHHHHHhC
Confidence 99998 46788999999875432 2235677888888876664433 347999999999999999999
Q ss_pred CCEEEeecccCCcCHHHHHHHHHHHHHh-cCCCeEEEEccCchhhhh-cCEEEEEeCcEEE
Q 000909 1149 PTILLLDEATSALDVQSEQVVQEALDRI-MMGRTTIVVAHRLNTIKK-LDSIALVADGRVV 1207 (1230)
Q Consensus 1149 p~ILlLDEaTSaLD~~te~~I~~~l~~~-~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Iv 1207 (1230)
|++|||||||++||+++.+.+.+.|++. .+++|+|++||+++.+.. ||+|++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999987 358899999999999875 8999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=380.70 Aligned_cols=214 Identities=29% Similarity=0.444 Sum_probs=187.9
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1070 (1230)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 4999999999963 3699999999999999999999999999999999999999999999999999888888899999
Q ss_pred eEEcccccCCcc-cHHHHhccCCC----------CCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHH
Q 000909 1071 ALVSQEPVIYAG-NIRDNIVFGKL----------DASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRI 1139 (1230)
Q Consensus 1071 ~~VpQdp~Lf~g-TIreNl~~g~~----------~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 1139 (1230)
+|+||++.++.+ |+++|+.++.. ...++++.++++.+++.+++... ..+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----------VDSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----------cccCCHHHHHHH
Confidence 999999877665 99999986521 01234567777777776554332 347999999999
Q ss_pred HHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhHHh
Q 000909 1140 AIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQLT 1216 (1230)
Q Consensus 1140 alARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eLl 1216 (1230)
+||||++.+|+||||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999999999999874 3799999999999986 58999999999999999999987
Q ss_pred hc
Q 000909 1217 HM 1218 (1230)
Q Consensus 1217 ~~ 1218 (1230)
+.
T Consensus 237 ~~ 238 (265)
T PRK10575 237 RG 238 (265)
T ss_pred CH
Confidence 53
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=380.35 Aligned_cols=217 Identities=31% Similarity=0.506 Sum_probs=186.0
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCCCeEEECCeecCCCC--hH
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD-----VEQGSVRVDGMDVRELD--VH 1064 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~i~--~~ 1064 (1230)
=+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|++. |++|+|.++|.++.+.+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 468999999963 469999999999999999999999999999999999986 47999999999987653 34
Q ss_pred HHhhcceEEcccccCCcccHHHHhccCCC--CC------CHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHH
Q 000909 1065 WYRKHTALVSQEPVIYAGNIRDNIVFGKL--DA------SENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQR 1136 (1230)
Q Consensus 1065 ~lR~~i~~VpQdp~Lf~gTIreNl~~g~~--~~------sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 1136 (1230)
.+|++++|+||++.+|.+|+++|+.++.. +. .++++.++++..++.+.+. +.++..+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHH
Confidence 67899999999999999999999986521 11 1234556666666644321 223455678999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHH
Q 000909 1137 QRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQL 1215 (1230)
Q Consensus 1137 QrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1215 (1230)
||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999875 899999999999999999999
Q ss_pred hhc
Q 000909 1216 THM 1218 (1230)
Q Consensus 1216 l~~ 1218 (1230)
++.
T Consensus 236 ~~~ 238 (251)
T PRK14244 236 FKN 238 (251)
T ss_pred hcC
Confidence 876
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=376.14 Aligned_cols=221 Identities=34% Similarity=0.551 Sum_probs=185.8
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCC---HHHHhh
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQ---LKWVRR 431 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~---~~~~r~ 431 (1230)
++++|++++|++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ...+++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 478999999964 145999999999999999999999999999999999999999999999999998776 456788
Q ss_pred heEEEccCccccc-hhHHHHHhcCCCCCC--HHHH---HHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHH
Q 000909 432 EMGLVSQEHALFG-TSIKDNIMFGKLDAT--MDEV---IAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIA 505 (1230)
Q Consensus 432 ~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~--~~~~---~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 505 (1230)
.++|++|++.+|. .|++||+.++..... ...+ ........+.+.++.+ |++......+.+||||||||++||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la 156 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV--GLLDKAYQRADQLSGGQQQRVAIA 156 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHc--CChhhhCCCcccCCHHHHHHHHHH
Confidence 9999999998886 599999987532110 0000 0011112234455555 676667888899999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHH
Q 000909 506 RAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLI 579 (1230)
Q Consensus 506 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 579 (1230)
||++.+|++|||||||++||+.+...+.+.|++.. .|+|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 157 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 157 RALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 99999999999999999999999999999998864 48999999999999984 9999999999999999998863
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=378.71 Aligned_cols=213 Identities=27% Similarity=0.444 Sum_probs=183.4
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCC---------
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELD--------- 1062 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~--------- 1062 (1230)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 579999999963 35999999999999999999999999999999999999999999999999997653
Q ss_pred ----hHHHhhcceEEcccccCCc-ccHHHHhccCCC---CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCC
Q 000909 1063 ----VHWYRKHTALVSQEPVIYA-GNIRDNIVFGKL---DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQ 1130 (1230)
Q Consensus 1063 ----~~~lR~~i~~VpQdp~Lf~-gTIreNl~~g~~---~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~ 1130 (1230)
...+|++++|+||++.+|. .|+++|+.++.. ... ++++.++++..++.++. ......
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKA-----------DHMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHh-----------hcChhh
Confidence 2467889999999999885 799999986421 112 23445555555555443 344568
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCcEEE
Q 000909 1131 LSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIK-KLDSIALVADGRVV 1207 (1230)
Q Consensus 1131 LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~vl~~G~Iv 1207 (1230)
||||||||++||||++++|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+. .||++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998753 789999999999985 58999999999999
Q ss_pred EecCHhHHhhc
Q 000909 1208 ERGTYAQLTHM 1218 (1230)
Q Consensus 1208 e~Gt~~eLl~~ 1218 (1230)
+.|+++++.+.
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99999999865
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-42 Score=377.40 Aligned_cols=216 Identities=28% Similarity=0.450 Sum_probs=183.9
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcce
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1071 (1230)
++++||+++|++. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4789999999641 45999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEcccccCCc-ccHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHH
Q 000909 1072 LVSQEPVIYA-GNIRDNIVFGKL--DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARA 1144 (1230)
Q Consensus 1072 ~VpQdp~Lf~-gTIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARA 1144 (1230)
|+||+|.+|. .|++||+.++.. ..+ ++++.++++..++.+ +......+.+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 9999999986 699999976421 111 123344444444421 012344567899999999999999
Q ss_pred HccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHhhc
Q 000909 1145 IIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1145 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1218 (1230)
++++|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999999998753 8999999999998754 799999999999999999999765
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=379.45 Aligned_cols=218 Identities=32% Similarity=0.496 Sum_probs=186.0
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CCCeEEECCeecCCCC--h
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV-----EQGSVRVDGMDVRELD--V 1063 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i~--~ 1063 (1230)
.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++...+ .
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5999999999963 3599999999999999999999999999999999999985 7999999999986533 4
Q ss_pred HHHhhcceEEcccccCCcccHHHHhccCCC--CCCH----HHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHH
Q 000909 1064 HWYRKHTALVSQEPVIYAGNIRDNIVFGKL--DASE----NEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQ 1137 (1230)
Q Consensus 1064 ~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~--~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 1137 (1230)
..+|+.++|+||++.+|..|++||+.++.. ..+. +++.++++.+++.+.+. .........|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChhhCCHHHHH
Confidence 567889999999999999999999986421 1222 23555666666543221 1223445689999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHh
Q 000909 1138 RIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLT 1216 (1230)
Q Consensus 1138 rlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl 1216 (1230)
|++|||||+.+|+||||||||++||+++...+.+.|++..+++|+|+|||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988678999999999999865 8999999999999999999998
Q ss_pred hc
Q 000909 1217 HM 1218 (1230)
Q Consensus 1217 ~~ 1218 (1230)
++
T Consensus 242 ~~ 243 (258)
T PRK14268 242 HN 243 (258)
T ss_pred cC
Confidence 65
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=377.38 Aligned_cols=219 Identities=31% Similarity=0.528 Sum_probs=187.7
Q ss_pred CcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CCCeEEECCeecCC--CC
Q 000909 990 GKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV-----EQGSVRVDGMDVRE--LD 1062 (1230)
Q Consensus 990 g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i~ 1062 (1230)
|.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+ .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 56999999999963 3599999999999999999999999999999999999863 68999999999875 45
Q ss_pred hHHHhhcceEEcccccCCcccHHHHhccCCC--CC-----CHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhH
Q 000909 1063 VHWYRKHTALVSQEPVIYAGNIRDNIVFGKL--DA-----SENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQ 1135 (1230)
Q Consensus 1063 ~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~--~~-----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 1135 (1230)
...+|++++|+||+|.+|+.|+++|+.++.. .. .++++.++++.+++.+.+. ........+|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHH
Confidence 5678999999999999999999999987521 11 1334555666666544332 22344567899999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhH
Q 000909 1136 RQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQ 1214 (1230)
Q Consensus 1136 rQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~e 1214 (1230)
|||++||||++.+|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999998865 79999999999999999999
Q ss_pred Hhhc
Q 000909 1215 LTHM 1218 (1230)
Q Consensus 1215 Ll~~ 1218 (1230)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14240 232 LFTN 235 (250)
T ss_pred HHhC
Confidence 8765
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=378.35 Aligned_cols=218 Identities=28% Similarity=0.422 Sum_probs=185.8
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc--C---CCCeEEECCeecCCC--Ch
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD--V---EQGSVRVDGMDVREL--DV 1063 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~--p---~~G~I~idG~di~~i--~~ 1063 (1230)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++ | ++|+|.+||.+++.. +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999963 359999999999999999999999999999999999954 6 489999999998653 34
Q ss_pred HHHhhcceEEcccccCCcccHHHHhccCCC--CC-----CHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHH
Q 000909 1064 HWYRKHTALVSQEPVIYAGNIRDNIVFGKL--DA-----SENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQR 1136 (1230)
Q Consensus 1064 ~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~--~~-----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 1136 (1230)
..+|+.++||||+|.+|+.|++||+.++.. .. .++++.++++.+++.+.+. +.......+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 567889999999999999999999986421 11 1234555666666644332 223455678999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHH
Q 000909 1137 QRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQL 1215 (1230)
Q Consensus 1137 QrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1215 (1230)
||++||||++++|++|||||||++||+++...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998864 899999999999999999999
Q ss_pred hhc
Q 000909 1216 THM 1218 (1230)
Q Consensus 1216 l~~ 1218 (1230)
++.
T Consensus 235 ~~~ 237 (252)
T PRK14239 235 FMN 237 (252)
T ss_pred HhC
Confidence 865
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=357.67 Aligned_cols=178 Identities=32% Similarity=0.646 Sum_probs=166.4
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcce
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1071 (1230)
|+++|++++|+.+ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5789999999743 23699999999999999999999999999999999999999999999999998776 667889999
Q ss_pred EEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 000909 1072 LVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTI 1151 (1230)
Q Consensus 1072 ~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p~I 1151 (1230)
|+||+|.+|+.|++||+ ..+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999997 457999999999999999999999
Q ss_pred EEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCcEEEEec
Q 000909 1152 LLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERG 1210 (1230)
Q Consensus 1152 LlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~G 1210 (1230)
|||||||++||+++.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999887789999999999999989999999999999865
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=378.88 Aligned_cols=219 Identities=30% Similarity=0.472 Sum_probs=185.6
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCCCeEEECCeecCC--CCh
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD-----VEQGSVRVDGMDVRE--LDV 1063 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~~ 1063 (1230)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999963 359999999999999999999999999999999999997 479999999999864 345
Q ss_pred HHHhhcceEEcccccCCcccHHHHhccCCC--CC-----CHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHH
Q 000909 1064 HWYRKHTALVSQEPVIYAGNIRDNIVFGKL--DA-----SENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQR 1136 (1230)
Q Consensus 1064 ~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~--~~-----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 1136 (1230)
..+|+.++|++|++.+|+.|++||+.++.. .. .++++.++++..+++... +.. ......+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~----~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET---KDN----LDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch---HHH----hccChhhCCHHHH
Confidence 667889999999999999999999986521 11 123445555665553211 111 2345678999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHH
Q 000909 1137 QRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQL 1215 (1230)
Q Consensus 1137 QrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1215 (1230)
||++||||++++|++|||||||++||+++...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 799999999999999999999
Q ss_pred hhcc
Q 000909 1216 THMR 1219 (1230)
Q Consensus 1216 l~~~ 1219 (1230)
....
T Consensus 234 ~~~~ 237 (251)
T PRK14251 234 FIAP 237 (251)
T ss_pred HhCC
Confidence 7653
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=370.93 Aligned_cols=217 Identities=28% Similarity=0.440 Sum_probs=181.9
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHH-hhhe
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWV-RREM 433 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~-r~~i 433 (1230)
|+++||+++|++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... ++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 578999999963 359999999999999999999999999999999999999999999999999988776554 6689
Q ss_pred EEEccCccccch-hHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCC
Q 000909 434 GLVSQEHALFGT-SIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNP 512 (1230)
Q Consensus 434 ~~v~Q~~~l~~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 512 (1230)
+|++|++.+|+. |++||+.++.......+.. ..+.+.++.++ +++......+.+||||||||++||||++.+|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~-----~~~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRK-----ARLERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHH-----HHHHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999986 9999999764322111111 11122233331 2444556777899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 513 VILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 513 ~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
+++||||||++||+.++..+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999998764 58999999999999866 99999999999999999887653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-42 Score=372.21 Aligned_cols=204 Identities=30% Similarity=0.453 Sum_probs=172.8
Q ss_pred EEEEEEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHH----H
Q 000909 992 IEMRRVDFAYPSRP-DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW----Y 1066 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~----l 1066 (1230)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999996421 146999999999999999999999999999999999999999999999999998876432 4
Q ss_pred hhcceEEcccccCCcc-cHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHH
Q 000909 1067 RKHTALVSQEPVIYAG-NIRDNIVFGKL--DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRI 1139 (1230)
Q Consensus 1067 R~~i~~VpQdp~Lf~g-TIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 1139 (1230)
|++++|+||+|.+|.+ |++||+.++.. ... ++++.++++..++.+. ......+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDR-----------LNHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchh-----------hhcChhhcCHHHHHHH
Confidence 6789999999999986 99999987532 111 2234455555554433 3344568999999999
Q ss_pred HHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCcEE
Q 000909 1140 AIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKKLDSIALVADGRV 1206 (1230)
Q Consensus 1140 alARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~vl~~G~I 1206 (1230)
+|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998754 7999999999999988899999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=379.85 Aligned_cols=214 Identities=27% Similarity=0.465 Sum_probs=185.4
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCC-hHHHhhcc
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELD-VHWYRKHT 1070 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~-~~~lR~~i 1070 (1230)
|+++||+++|++ ..++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++...+ ...+|+++
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 789999999963 235999999999999999999999999999999999999999999999999998775 46788999
Q ss_pred eEEccccc--CCcccHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHH
Q 000909 1071 ALVSQEPV--IYAGNIRDNIVFGKL--DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIA 1142 (1230)
Q Consensus 1071 ~~VpQdp~--Lf~gTIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalA 1142 (1230)
+|+||+|. +++.|+++|+.++.. ..+ ++++.++++..++.++. ...+..||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYR-----------HRSPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHh-----------cCCcccCCHHHHHHHHHH
Confidence 99999985 677899999987532 122 23345556666665443 334568999999999999
Q ss_pred HHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCcEEEEecCHhHHhhc
Q 000909 1143 RAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1143 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~ 1218 (1230)
||++.+|+||||||||++||+.+...+.+.+++.. +|+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999998865 48999999999999988999999999999999999998754
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=370.00 Aligned_cols=209 Identities=26% Similarity=0.406 Sum_probs=180.4
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcce
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1071 (1230)
|+++||+++|++ .++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 578999999963 3599999999999999999999999999999999999999999999999998763 356788999
Q ss_pred EEcccccCCcc-cHHHHhccCCC--CC----CHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHH
Q 000909 1072 LVSQEPVIYAG-NIRDNIVFGKL--DA----SENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARA 1144 (1230)
Q Consensus 1072 ~VpQdp~Lf~g-TIreNl~~g~~--~~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARA 1144 (1230)
|+||++.+|.. |+++|+.++.. .. .++++.++++..++.++... ....||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADR-----------LVKTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------ChhhCCHHHHHHHHHHHH
Confidence 99999998875 99999976311 11 23345667777777655432 235799999999999999
Q ss_pred HccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHH
Q 000909 1145 IIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQL 1215 (1230)
Q Consensus 1145 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1215 (1230)
++.+|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999999998653 7899999999999875 799999999999999998874
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=379.96 Aligned_cols=216 Identities=29% Similarity=0.483 Sum_probs=185.0
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhhe
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREM 433 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i 433 (1230)
-|+++|++++|+. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+..+++++|
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 4899999999963 23599999999999999999999999999999999999999999999999999888888888899
Q ss_pred EEEccCc--cccchhHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhc
Q 000909 434 GLVSQEH--ALFGTSIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAII 509 (1230)
Q Consensus 434 ~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 509 (1230)
+|++|+| .++..|++||+.++... .+.++..+ .+.+.++.+ |+.........+||||||||++|||||+
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgG~~qrv~laraL~ 154 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVER-----RVEEALKAV--RMWDFRDKPPYHLSYGQKKRVAIAGVLA 154 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHHC--CCHHHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999998 57788999999986321 12222111 122334444 5655566677899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-ccCEEEEEeCCeEEEecChhHH
Q 000909 510 KNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVR-NADLIAVVDNGCLVEIGTHNDL 578 (1230)
Q Consensus 510 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~g~~~~l 578 (1230)
.+|++|||||||++||+.+...+.+.+++.. +|+|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 155 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 155 MDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999998764 4899999999999985 5999999999999999998764
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=374.72 Aligned_cols=217 Identities=27% Similarity=0.426 Sum_probs=181.9
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHH-hhcc
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWY-RKHT 1070 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~l-R~~i 1070 (1230)
|+++||+++|++ .++|+|+||++++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+ |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 578999999963 359999999999999999999999999999999999999999999999999988776554 5679
Q ss_pred eEEcccccCCcc-cHHHHhccCCC--CCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHcc
Q 000909 1071 ALVSQEPVIYAG-NIRDNIVFGKL--DASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIR 1147 (1230)
Q Consensus 1071 ~~VpQdp~Lf~g-TIreNl~~g~~--~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~ 1147 (1230)
+|+||++.+|.+ |++||+.++.+ ....++..+ .+.+.++.+ |++........+||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999987 99999986432 112221111 122333333 34444455667899999999999999999
Q ss_pred CCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHhhc
Q 000909 1148 NPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1148 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1218 (1230)
+|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 223 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAAN 223 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhcC
Confidence 999999999999999999999999998875 47899999999987765 799999999999999999998753
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=379.68 Aligned_cols=217 Identities=28% Similarity=0.438 Sum_probs=187.8
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1070 (1230)
.|+++|++++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999743 24599999999999999999999999999999999999999999999999999988888899999
Q ss_pred eEEccccc--CCcccHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHH
Q 000909 1071 ALVSQEPV--IYAGNIRDNIVFGKL--DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIA 1142 (1230)
Q Consensus 1071 ~~VpQdp~--Lf~gTIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalA 1142 (1230)
+|+||+|. ++..|+++|+.++.. ... ++++.++++..++.++. .....+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERA-----------DYEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCCcccCCHHHHHHHHHH
Confidence 99999994 455689999987532 122 23445556666654432 234568999999999999
Q ss_pred HHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCcEEEEecCHhHHhhcc
Q 000909 1143 RAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMR 1219 (1230)
Q Consensus 1143 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eLl~~~ 1219 (1230)
||++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+..
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 233 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcCH
Confidence 999999999999999999999999999999998753 78999999999999889999999999999999999987653
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=377.83 Aligned_cols=218 Identities=32% Similarity=0.496 Sum_probs=186.3
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc---ccC--CCCeEEECCeecCCC--Ch
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRF---YDV--EQGSVRVDGMDVREL--DV 1063 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl---~~p--~~G~I~idG~di~~i--~~ 1063 (1230)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+ ++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4899999999963 3599999999999999999999999999999999997 454 589999999999764 34
Q ss_pred HHHhhcceEEcccccCCcccHHHHhccCCC--CC-----CHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHH
Q 000909 1064 HWYRKHTALVSQEPVIYAGNIRDNIVFGKL--DA-----SENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQR 1136 (1230)
Q Consensus 1064 ~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~--~~-----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 1136 (1230)
..+|++++|+||+|.+|..|+++|+.++.. .. .+++++++++..++.+++. +.....+.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 677889999999999999999999986421 11 1234556666666644332 223455678999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhHH
Q 000909 1137 QRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQL 1215 (1230)
Q Consensus 1137 QrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eL 1215 (1230)
||++||||++++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999999877899999999999985 4899999999999999999999
Q ss_pred hhc
Q 000909 1216 THM 1218 (1230)
Q Consensus 1216 l~~ 1218 (1230)
.++
T Consensus 233 ~~~ 235 (250)
T PRK14245 233 FTN 235 (250)
T ss_pred hcC
Confidence 865
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=377.93 Aligned_cols=218 Identities=25% Similarity=0.417 Sum_probs=186.3
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc--C---CCCeEEECCeecCC--CCh
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD--V---EQGSVRVDGMDVRE--LDV 1063 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~--p---~~G~I~idG~di~~--i~~ 1063 (1230)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.+||.++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 4899999999963 359999999999999999999999999999999999997 3 58999999999864 445
Q ss_pred HHHhhcceEEcccccCCcccHHHHhccCCC--C-CCH----HHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHH
Q 000909 1064 HWYRKHTALVSQEPVIYAGNIRDNIVFGKL--D-ASE----NEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQR 1136 (1230)
Q Consensus 1064 ~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~--~-~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 1136 (1230)
..+|++++|+||+|.+|.+|++||+.++.. . .++ +++.++++..++.+++. +.....+.+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHH
Confidence 678899999999999999999999986521 1 122 23444556666644432 223455678999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHH
Q 000909 1137 QRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQL 1215 (1230)
Q Consensus 1137 QrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1215 (1230)
||++||||++++|+||||||||++||+++...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 799999999999999999998
Q ss_pred hhc
Q 000909 1216 THM 1218 (1230)
Q Consensus 1216 l~~ 1218 (1230)
+++
T Consensus 242 ~~~ 244 (259)
T PRK14274 242 FSN 244 (259)
T ss_pred hhC
Confidence 765
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=394.66 Aligned_cols=212 Identities=29% Similarity=0.498 Sum_probs=184.7
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1070 (1230)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+.. ++++
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 4899999999963 3599999999999999999999999999999999999999999999999999877653 5789
Q ss_pred eEEcccccCCcc-cHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHH
Q 000909 1071 ALVSQEPVIYAG-NIRDNIVFGKL--DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIAR 1143 (1230)
Q Consensus 1071 ~~VpQdp~Lf~g-TIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalAR 1143 (1230)
+||||++.+|.. |++||+.++.. ..+ ++++.++++..++.++..+ ...+||||||||++|||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~-----------~~~~LSgGq~QRvaLAr 146 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDR-----------KPKALSGGQRQRVAIGR 146 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcC-----------ChhhCCHHHHHHHHHHH
Confidence 999999999965 99999987632 122 2345666777776554433 34579999999999999
Q ss_pred HHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhHHhhc
Q 000909 1144 AIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1144 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eLl~~ 1218 (1230)
||+++|++||||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999988743 789999999999876 5899999999999999999999875
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=367.00 Aligned_cols=203 Identities=25% Similarity=0.421 Sum_probs=179.0
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcce
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1071 (1230)
|+++||+++|++ .++|+|+||++++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.+. ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 578999999963 4699999999999999999999999999999999999999999999999998764 56788999
Q ss_pred EEcccccCC-cccHHHHhccCC--CCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccC
Q 000909 1072 LVSQEPVIY-AGNIRDNIVFGK--LDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRN 1148 (1230)
Q Consensus 1072 ~VpQdp~Lf-~gTIreNl~~g~--~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~ 1148 (1230)
|+||++.+| +.|++||+.++. ...+++++.++++..++.+...+ ....||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKK-----------KVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhh-----------hHhhCCHHHHHHHHHHHHHhcC
Confidence 999999887 579999997642 12346677888888888765433 3457999999999999999999
Q ss_pred CCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCcEEEEec
Q 000909 1149 PTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERG 1210 (1230)
Q Consensus 1149 p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~G 1210 (1230)
|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999865 48999999999999865 8999999999999875
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=374.17 Aligned_cols=218 Identities=32% Similarity=0.539 Sum_probs=187.2
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheE
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
++++||+++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4789999999741 45999999999999999999999999999999999999999999999999998887777888999
Q ss_pred EEccCccccc-hhHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCcccc--hhcCCCCCCChhHHHHHHHHHHhc
Q 000909 435 LVSQEHALFG-TSIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYET--KVGERGALLSGGQKQRIAIARAII 509 (1230)
Q Consensus 435 ~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t--~~~~~g~~LSgGqkqri~iARal~ 509 (1230)
|++|++.+|. .|++||+.++... ...++ ....+.+.++.+ |+.. ...+.+.+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~-----~~~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEK-----IRERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHH-----HHHHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 9999999986 5999999875311 11111 112234556665 6654 567788999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhh
Q 000909 510 KNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 510 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 581 (1230)
++|+++||||||++||+.+.+.+.+.|++.. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999998864 38999999999998765 999999999999999999988653
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=377.91 Aligned_cols=216 Identities=28% Similarity=0.435 Sum_probs=184.7
Q ss_pred CcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCC--------
Q 000909 990 GKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVREL-------- 1061 (1230)
Q Consensus 990 g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i-------- 1061 (1230)
+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 56999999999963 4599999999999999999999999999999999999999999999999998642
Q ss_pred -----ChHHHhhcceEEcccccCCcc-cHHHHhccCC---CCCC----HHHHHHHHHHhchHHHHHhccccccccccCCC
Q 000909 1062 -----DVHWYRKHTALVSQEPVIYAG-NIRDNIVFGK---LDAS----ENEVVEAARAANAHEFISSLKDGYETECGERG 1128 (1230)
Q Consensus 1062 -----~~~~lR~~i~~VpQdp~Lf~g-TIreNl~~g~---~~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G 1128 (1230)
....+|++++||||+|.+|.. |++||+.++. .... ++++.++++..++.+.. .....
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCCc
Confidence 135678899999999999975 9999997531 1112 22344555555554332 13456
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCcEE
Q 000909 1129 VQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGRV 1206 (1230)
Q Consensus 1129 ~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~I 1206 (1230)
..||||||||++|||||+++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||||++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 6899999999999999999999999999999999999999999999875 48999999999999986 799999999999
Q ss_pred EEecCHhHHhhc
Q 000909 1207 VERGTYAQLTHM 1218 (1230)
Q Consensus 1207 ve~Gt~~eLl~~ 1218 (1230)
++.|+++++.+.
T Consensus 231 ~~~~~~~~~~~~ 242 (257)
T PRK10619 231 EEEGAPEQLFGN 242 (257)
T ss_pred EEeCCHHHhhhC
Confidence 999999999865
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=377.30 Aligned_cols=225 Identities=30% Similarity=0.484 Sum_probs=189.9
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CCCeEEECCeecCCC--Ch
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV-----EQGSVRVDGMDVREL--DV 1063 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i--~~ 1063 (1230)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4899999999963 3599999999999999999999999999999999999984 899999999998753 34
Q ss_pred HHHhhcceEEcccccCCcccHHHHhccCCC--C-C----CHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHH
Q 000909 1064 HWYRKHTALVSQEPVIYAGNIRDNIVFGKL--D-A----SENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQR 1136 (1230)
Q Consensus 1064 ~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~--~-~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 1136 (1230)
..+|++++|+||+|.+|..|++||+.++.. . . .++++.++++..++.+.+.. .......+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-------ELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHH-------HHhCChhhcCHHHH
Confidence 567889999999999999999999986421 1 1 12345566666666543322 23456678999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhHH
Q 000909 1137 QRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQL 1215 (1230)
Q Consensus 1137 QrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eL 1215 (1230)
||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999999999877899999999999875 4899999999999999999999
Q ss_pred hhcc-cccHHH
Q 000909 1216 THMR-GAFFNL 1225 (1230)
Q Consensus 1216 l~~~-g~y~~l 1225 (1230)
.+.. ..|.+.
T Consensus 233 ~~~~~~~~~~~ 243 (250)
T PRK14262 233 VERPKNKLTEE 243 (250)
T ss_pred HhCCCChHHHH
Confidence 8753 234443
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=373.96 Aligned_cols=212 Identities=29% Similarity=0.471 Sum_probs=179.8
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHH-Hhhcc
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW-YRKHT 1070 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~-lR~~i 1070 (1230)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+... .++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 578999999963 36999999999999999999999999999999999999999999999999998887654 46789
Q ss_pred eEEcccccCCcc-cHHHHhccCCCC--CCHHH-HHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHc
Q 000909 1071 ALVSQEPVIYAG-NIRDNIVFGKLD--ASENE-VVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAII 1146 (1230)
Q Consensus 1071 ~~VpQdp~Lf~g-TIreNl~~g~~~--~sd~e-i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll 1146 (1230)
+|+||++.+|.. |+++|+.++... ...++ ..++++..+ +++........+||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999986 999999865321 11122 122222221 2223334556689999999999999999
Q ss_pred cCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHh
Q 000909 1147 RNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLT 1216 (1230)
Q Consensus 1147 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl 1216 (1230)
++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 99999999999999999999999999998753 7899999999999985 8999999999999999999973
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=372.90 Aligned_cols=219 Identities=34% Similarity=0.514 Sum_probs=186.7
Q ss_pred EEEEEEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHH---HHh
Q 000909 355 IEFEHVKFSYPSRP-DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLK---WVR 430 (1230)
Q Consensus 355 i~~~~v~~~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~---~~r 430 (1230)
|+++|++++|+++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .++
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68999999997431 12699999999999999999999999999999999999999999999999999876543 347
Q ss_pred hheEEEccCccccc-hhHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHH
Q 000909 431 REMGLVSQEHALFG-TSIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARA 507 (1230)
Q Consensus 431 ~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 507 (1230)
+.++|++|++.+|. .|++||+.++... ....+. ...+.+.++.+ |++........+||||||||++||||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~a 154 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEI-----EERVLELLELV--GLEDKADAYPAQLSGGQKQRVGIARA 154 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHC--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 88999999999997 5999999875321 111111 12334556666 77777777888999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 508 IIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 508 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
++.+|+++||||||++||+.+...+.+.+++.. .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 155 LANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999998864 38999999999999865 99999999999999999888764
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=374.53 Aligned_cols=221 Identities=30% Similarity=0.518 Sum_probs=185.2
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCH---HHHhh
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQL---KWVRR 431 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~---~~~r~ 431 (1230)
|+++||+++|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 2459999999999999999999999999999999999999999999999999887654 34678
Q ss_pred heEEEccCccccc-hhHHHHHhcCCCCCC--HHHH---HHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHH
Q 000909 432 EMGLVSQEHALFG-TSIKDNIMFGKLDAT--MDEV---IAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIA 505 (1230)
Q Consensus 432 ~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~--~~~~---~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 505 (1230)
+++|++|++.+|. .|++||+.++..... .... ........+.+.++.+ |++......+.+||||||||++||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV--GLADKAYQRADQLSGGQQQRVAIA 157 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHH
Confidence 9999999999886 599999987642110 0000 0001112334455665 777777888899999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHH
Q 000909 506 RAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLI 579 (1230)
Q Consensus 506 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 579 (1230)
|||+.+|+++||||||++||+.+...+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (243)
T TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD 234 (243)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHhC
Confidence 99999999999999999999999999999998863 37999999999999865 9999999999999999998863
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=380.11 Aligned_cols=218 Identities=28% Similarity=0.448 Sum_probs=185.6
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCCCeEEECCeecCC--CCh
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD-----VEQGSVRVDGMDVRE--LDV 1063 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~~ 1063 (1230)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 4999999999963 359999999999999999999999999999999999875 789999999999865 344
Q ss_pred HHHhhcceEEcccccCCcccHHHHhccCCC---CC----CHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHH
Q 000909 1064 HWYRKHTALVSQEPVIYAGNIRDNIVFGKL---DA----SENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQR 1136 (1230)
Q Consensus 1064 ~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~---~~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 1136 (1230)
..+|++++|+||+|.+|++|+++|+.++.. .. .++.+.++++..++.+.+. ........+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHHHH
Confidence 567889999999999999999999986421 11 1233555666665532221 123455678999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhHH
Q 000909 1137 QRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQL 1215 (1230)
Q Consensus 1137 QrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eL 1215 (1230)
||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999999877789999999999876 5799999999999999999999
Q ss_pred hhc
Q 000909 1216 THM 1218 (1230)
Q Consensus 1216 l~~ 1218 (1230)
..+
T Consensus 251 ~~~ 253 (268)
T PRK14248 251 FTS 253 (268)
T ss_pred HhC
Confidence 865
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=378.09 Aligned_cols=219 Identities=30% Similarity=0.449 Sum_probs=187.8
Q ss_pred CcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCCCeEEECCeecCC--CC
Q 000909 990 GKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD-----VEQGSVRVDGMDVRE--LD 1062 (1230)
Q Consensus 990 g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~ 1062 (1230)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 35999999999963 359999999999999999999999999999999999987 689999999999863 56
Q ss_pred hHHHhhcceEEcccccCCcccHHHHhccCCC--CC---CHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHH
Q 000909 1063 VHWYRKHTALVSQEPVIYAGNIRDNIVFGKL--DA---SENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQ 1137 (1230)
Q Consensus 1063 ~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~--~~---sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 1137 (1230)
...+|++++|+||+|.+|..|++||+.++.. .. .++++.++++.+++.+.+ +........+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC-------KDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchh-------hhhhCCCcccCCHHHHH
Confidence 6788999999999999999999999987532 11 134455666666654332 22334556789999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeC-----------cE
Q 000909 1138 RIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIK-KLDSIALVAD-----------GR 1205 (1230)
Q Consensus 1138 rlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~D~I~vl~~-----------G~ 1205 (1230)
|++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+. .||+|++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 99999999999999999999999999999999999998877899999999999886 5799999996 77
Q ss_pred EEEecCHhHHhhc
Q 000909 1206 VVERGTYAQLTHM 1218 (1230)
Q Consensus 1206 Ive~Gt~~eLl~~ 1218 (1230)
++|.|+++++.+.
T Consensus 242 ~~~~~~~~~~~~~ 254 (269)
T PRK14259 242 LVEFNETKKIFNS 254 (269)
T ss_pred EEEeCCHHHHHhC
Confidence 9999999999864
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=383.10 Aligned_cols=220 Identities=25% Similarity=0.444 Sum_probs=185.6
Q ss_pred EEEEEEEEECCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCC---------
Q 000909 355 IEFEHVKFSYPSRP--DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRR--------- 423 (1230)
Q Consensus 355 i~~~~v~~~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~--------- 423 (1230)
|+++|++++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999997432 1359999999999999999999999999999999999999999999999887632
Q ss_pred ---------------CCHHHHhhheEEEccCc--cccchhHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCccc
Q 000909 424 ---------------LQLKWVRREMGLVSQEH--ALFGTSIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYE 484 (1230)
Q Consensus 424 ---------------~~~~~~r~~i~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~ 484 (1230)
.+...+++.||||+|+| .+|..||+|||.|+... ...++..+ .+.+.++.+ |++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~ 155 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKK-----RAAKYIELV--GLD 155 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHHc--CCC
Confidence 13456788999999986 67888999999987432 22333322 123445555 675
Q ss_pred -chhcCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-ccCEE
Q 000909 485 -TKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVR-NADLI 561 (1230)
Q Consensus 485 -t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~d~i 561 (1230)
........+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+. .||+|
T Consensus 156 ~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv 235 (305)
T PRK13651 156 ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRT 235 (305)
T ss_pred hhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEE
Confidence 45778889999999999999999999999999999999999999999999998764 5899999999999875 49999
Q ss_pred EEEeCCeEEEecChhHHHhh
Q 000909 562 AVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 562 ~~l~~G~i~~~g~~~~l~~~ 581 (1230)
++|++|++++.|+++++.+.
T Consensus 236 ~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 236 IFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred EEEECCEEEEECCHHHHhcC
Confidence 99999999999999998753
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=374.75 Aligned_cols=212 Identities=22% Similarity=0.402 Sum_probs=183.0
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHH-hhcc
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWY-RKHT 1070 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~l-R~~i 1070 (1230)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |+.+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999963 359999999999999999999999999999999999999999999999999988876654 5579
Q ss_pred eEEcccccCCcc-cHHHHhccCCCCC--------------CHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhH
Q 000909 1071 ALVSQEPVIYAG-NIRDNIVFGKLDA--------------SENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQ 1135 (1230)
Q Consensus 1071 ~~VpQdp~Lf~g-TIreNl~~g~~~~--------------sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 1135 (1230)
+|+||++.+|.+ |++||+.++.... .++++.++++.. |++.........|||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Ge 148 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI-----------GLADEADRLAGLLSHGQ 148 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHH
Confidence 999999999986 9999998753210 112233333333 34434445667899999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhH
Q 000909 1136 RQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQ 1214 (1230)
Q Consensus 1136 rQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~e 1214 (1230)
|||++||||++++|++|||||||++||+++.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~ 228 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQ 228 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHH
Confidence 99999999999999999999999999999999999999998778999999999999975 89999999999999999999
Q ss_pred Hhh
Q 000909 1215 LTH 1217 (1230)
Q Consensus 1215 Ll~ 1217 (1230)
+..
T Consensus 229 ~~~ 231 (242)
T TIGR03411 229 VQA 231 (242)
T ss_pred Hhc
Confidence 875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=370.20 Aligned_cols=205 Identities=28% Similarity=0.447 Sum_probs=173.2
Q ss_pred EEEEEEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHH---Hh
Q 000909 992 IEMRRVDFAYPSRP-DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW---YR 1067 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---lR 1067 (1230)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996421 246999999999999999999999999999999999999999999999999998887654 34
Q ss_pred -hcceEEcccccCCc-ccHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHH
Q 000909 1068 -KHTALVSQEPVIYA-GNIRDNIVFGKL--DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRI 1139 (1230)
Q Consensus 1068 -~~i~~VpQdp~Lf~-gTIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 1139 (1230)
++++|+||+|.+|. .|++||+.++.. ..+ .+++.++++..++.+ ........||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEH-----------RINHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHH
Confidence 68999999999986 599999976321 111 123444455444433 33344568999999999
Q ss_pred HHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCcEEE
Q 000909 1140 AIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKKLDSIALVADGRVV 1207 (1230)
Q Consensus 1140 alARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~D~I~vl~~G~Iv 1207 (1230)
+||||++++|+||||||||++||+++...+.+.|++.. .++|+|+|||+++.+..+|+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999999874 378999999999999989999999999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=374.10 Aligned_cols=213 Identities=30% Similarity=0.496 Sum_probs=182.2
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCC--ChHHHhhc
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVREL--DVHWYRKH 1069 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i--~~~~lR~~ 1069 (1230)
|+++|++++|++ .++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 789999999963 3599999999999999999999999999999999999999999999999999864 34577889
Q ss_pred ceEEcccccCCc-ccHHHHhccCCC---CCCHH----HHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHH
Q 000909 1070 TALVSQEPVIYA-GNIRDNIVFGKL---DASEN----EVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAI 1141 (1230)
Q Consensus 1070 i~~VpQdp~Lf~-gTIreNl~~g~~---~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlal 1141 (1230)
++|+||++.+|. .|+++|+.++.. ..+.+ ++.++++..++ +.........||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGL-----------AERAHHYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hHHHhcChhhcCHHHHHHHHH
Confidence 999999998886 599999987521 12222 23334444444 333344556899999999999
Q ss_pred HHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHhhc
Q 000909 1142 ARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1142 ARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1218 (1230)
|||++++|++|||||||++||+++...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999999999875 48999999999999865 899999999999999999998765
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=362.31 Aligned_cols=203 Identities=36% Similarity=0.579 Sum_probs=179.8
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhh
Q 000909 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRRE 432 (1230)
Q Consensus 353 ~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~ 432 (1230)
+.++++|++++|+.. +.++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 569999999999742 2369999999999999999999999999999999999999999999999999988888888899
Q ss_pred eEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCC
Q 000909 433 MGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNP 512 (1230)
Q Consensus 433 i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 512 (1230)
|+||+|+|.+|++|++||+.+... ...+++.++++ +++++.+|||||+||++||||++.+|
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p 144 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRP 144 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCC-CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCC
Confidence 999999999999999999986532 23333222211 35677899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEeCCeEEEecCh
Q 000909 513 VILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTH 575 (1230)
Q Consensus 513 ~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~ 575 (1230)
+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 999999999999999999999999987778999999999999988999999999999988763
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=370.21 Aligned_cols=215 Identities=28% Similarity=0.484 Sum_probs=182.3
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheE
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
|+++||+++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 5789999999642 246999999999999999999999999999999999999999999999999987643 56778899
Q ss_pred EEccCcccc-chhHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccC
Q 000909 435 LVSQEHALF-GTSIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKN 511 (1230)
Q Consensus 435 ~v~Q~~~l~-~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 511 (1230)
|++|++.++ ..|++||+.++.. ....++.. ..+.+.++.+ |++........+||||||||++||||++.+
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIK-----EEVELLLRVL--GLTDKANKRARTLSGGMKRKLSLAIALIGG 151 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCHHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence 999999988 4699999986421 11111111 1233445555 565556667789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHH
Q 000909 512 PVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDL 578 (1230)
Q Consensus 512 ~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 578 (1230)
|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 152 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 152 PSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999987777999999999999865 999999999999999998775
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=376.60 Aligned_cols=220 Identities=29% Similarity=0.458 Sum_probs=183.0
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCeecCC--CCH
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD-----ADDGIVRIDGVDIRR--LQL 426 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~i~~--~~~ 426 (1230)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 5899999999963 359999999999999999999999999999999999975 689999999999865 345
Q ss_pred HHHhhheEEEccCccccchhHHHHHhcCCC--CC-CHHHHHHHHHHHhHHHHHHhC--CCcccchhcCCCCCCChhHHHH
Q 000909 427 KWVRREMGLVSQEHALFGTSIKDNIMFGKL--DA-TMDEVIAAATAANAHNFIRQL--PEGYETKVGERGALLSGGQKQR 501 (1230)
Q Consensus 427 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~--~~-~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGqkqr 501 (1230)
..+|+.++|++|++.+|+.|++||+.++.. .. ..++..+ .+.+.++.+ .+.+.+..++.+.+||||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 157 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAE-----RVERSLRHAALWDEVKDRLHESALGLSGGQQQR 157 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHH-----HHHHHHHHcCCchhhhHHhhCCcccCCHHHHHH
Confidence 567889999999999998899999987521 11 1111111 111222222 1112334577788999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 502 IAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 502 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
++||||++.+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 237 (253)
T PRK14242 158 LCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFT 237 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999987668999999999999865 99999999999999999999876
Q ss_pred h
Q 000909 581 R 581 (1230)
Q Consensus 581 ~ 581 (1230)
.
T Consensus 238 ~ 238 (253)
T PRK14242 238 R 238 (253)
T ss_pred C
Confidence 4
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-42 Score=359.88 Aligned_cols=230 Identities=31% Similarity=0.480 Sum_probs=193.2
Q ss_pred cEEEEEEEEECCCCCC---------------------CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 000909 354 EIEFEHVKFSYPSRPD---------------------SIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDG 412 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~---------------------~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G 412 (1230)
.|+++||++-|+.+++ ..-++|+||+|+.||+..|.|-||||||||++++.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 5888999988864321 1357899999999999999999999999999999999999999
Q ss_pred eEEECCeecCCCCHHHHh----hheEEEccCccccch-hHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHHhCCCcccc
Q 000909 413 IVRIDGVDIRRLQLKWVR----REMGLVSQEHALFGT-SIKDNIMFGKLDA--TMDEVIAAATAANAHNFIRQLPEGYET 485 (1230)
Q Consensus 413 ~i~~~g~~i~~~~~~~~r----~~i~~v~Q~~~l~~~-ti~~Ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t 485 (1230)
+|++||.|+..++.+++| +++++|+|+..|++- ||.||..||.+-. ..+|- ...+.+.++.. |++.
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er-----~~~a~~~l~~V--gL~~ 156 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAER-----EERALEALELV--GLEG 156 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHH-----HHHHHHHHHHc--Cchh
Confidence 999999999999977654 589999999999975 9999999996522 22221 12223334444 6666
Q ss_pred hhcCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEE
Q 000909 486 KVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIA 562 (1230)
Q Consensus 486 ~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~ 562 (1230)
.-...+.+||||+||||.|||||..+|+||++|||+|||||--+..+|+.+.++. -+||+++|||++++.-+ .|||.
T Consensus 157 ~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIa 236 (386)
T COG4175 157 YADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIA 236 (386)
T ss_pred hhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEE
Confidence 6666778999999999999999999999999999999999999999999987754 47999999999999754 99999
Q ss_pred EEeCCeEEEecChhHHHhhcCcHHHHHH
Q 000909 563 VVDNGCLVEIGTHNDLINRIDGHYAKMA 590 (1230)
Q Consensus 563 ~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 590 (1230)
.|++|+|+..|||+|++.++...|-.-+
T Consensus 237 imkdG~ivQ~Gtp~eIl~~PAndYV~~F 264 (386)
T COG4175 237 IMKDGEIVQVGTPEEILLNPANDYVRDF 264 (386)
T ss_pred EecCCeEEEeCCHHHHHcCccHHHHHHH
Confidence 9999999999999999987766665433
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=368.84 Aligned_cols=207 Identities=36% Similarity=0.564 Sum_probs=176.6
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheE
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 478999999963 459999999999999999999999999999999999999999999999999876543 467899
Q ss_pred EEccCccccc-hhHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccC
Q 000909 435 LVSQEHALFG-TSIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKN 511 (1230)
Q Consensus 435 ~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 511 (1230)
|++|++.+|. .|++||+.++... ...++.. ..+.+.++.+ |++........+||||||||++|||||+++
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~~ 148 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIR-----ARVRELLELV--GLEGLLNRYPHELSGGQQQRVALARALARE 148 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 9999998886 5999999875321 1111111 1233455555 777667777889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEec
Q 000909 512 PVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIG 573 (1230)
Q Consensus 512 ~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 573 (1230)
|+++||||||++||+.+...+.+.|.+.. .|+|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 149 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 149 PSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998864 38999999999999865 9999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=379.35 Aligned_cols=214 Identities=25% Similarity=0.389 Sum_probs=182.7
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChH---HHh
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVH---WYR 1067 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~lR 1067 (1230)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+.. .+|
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999877643 457
Q ss_pred hcceEEcccccCCcc-cHHHHhccCCC---CCCH----HHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHH
Q 000909 1068 KHTALVSQEPVIYAG-NIRDNIVFGKL---DASE----NEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRI 1139 (1230)
Q Consensus 1068 ~~i~~VpQdp~Lf~g-TIreNl~~g~~---~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 1139 (1230)
++++|+||++.+|.+ |++||+.++.. ..+. +.+.++++..++.+. ......+||||||||+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq~qrv 152 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGA-----------AKLMPSELSGGMARRA 152 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHH
Confidence 889999999999986 99999976421 1122 233344555544332 2234467999999999
Q ss_pred HHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHh
Q 000909 1140 AIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLT 1216 (1230)
Q Consensus 1140 alARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl 1216 (1230)
+||||++++|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998743 7899999999999876 7999999999999999999998
Q ss_pred hc
Q 000909 1217 HM 1218 (1230)
Q Consensus 1217 ~~ 1218 (1230)
++
T Consensus 233 ~~ 234 (269)
T PRK11831 233 AN 234 (269)
T ss_pred cC
Confidence 65
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=384.96 Aligned_cols=229 Identities=28% Similarity=0.386 Sum_probs=191.4
Q ss_pred cEEEEEEEEECCCCC----------CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCC
Q 000909 354 EIEFEHVKFSYPSRP----------DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRR 423 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~----------~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~ 423 (1230)
-|+++|++++|+.+. ...+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 589999999996321 2468999999999999999999999999999999999999999999999999988
Q ss_pred CCHH---HHhhheEEEccCc--cccc-hhHHHHHhcCC----CCCCHHHHHHHHHHHhHHHHHHhCCCccc-chhcCCCC
Q 000909 424 LQLK---WVRREMGLVSQEH--ALFG-TSIKDNIMFGK----LDATMDEVIAAATAANAHNFIRQLPEGYE-TKVGERGA 492 (1230)
Q Consensus 424 ~~~~---~~r~~i~~v~Q~~--~l~~-~ti~~Ni~~~~----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~ 492 (1230)
.+.. .+|++|+||+|+| .+++ .||.|||.++. +..+.++..+. +.+.++.+ |++ ......+.
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~-----~~~~l~~v--gl~~~~~~~~p~ 160 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDR-----VKAMMLKV--GLLPNLINRYPH 160 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHH-----HHHHHHHc--CCChHHhcCCcc
Confidence 8754 3577899999998 4774 69999997532 11233332222 22345554 553 34677888
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeE
Q 000909 493 LLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCL 569 (1230)
Q Consensus 493 ~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i 569 (1230)
+||||||||++|||||+.+|++||+||||++||+.++..+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|+|
T Consensus 161 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~i 240 (331)
T PRK15079 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHA 240 (331)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998864 38999999999999976 999999999999
Q ss_pred EEecChhHHHhhcCcHHHHH
Q 000909 570 VEIGTHNDLINRIDGHYAKM 589 (1230)
Q Consensus 570 ~~~g~~~~l~~~~~~~~~~~ 589 (1230)
++.|+++++.+++...|.+.
T Consensus 241 ve~g~~~~i~~~~~~py~~~ 260 (331)
T PRK15079 241 VELGTYDEVYHNPLHPYTKA 260 (331)
T ss_pred EEEcCHHHHHcCCCCHHHHH
Confidence 99999999987655566553
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=374.88 Aligned_cols=223 Identities=30% Similarity=0.410 Sum_probs=184.6
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecCC--CCH
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDA-----DDGIVRIDGVDIRR--LQL 426 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~i~~--~~~ 426 (1230)
-|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 5899999999963 3599999999999999999999999999999999999997 48999999999853 344
Q ss_pred HHHhhheEEEccCccccchhHHHHHhcCCCC---CCHH----HHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHH
Q 000909 427 KWVRREMGLVSQEHALFGTSIKDNIMFGKLD---ATMD----EVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQK 499 (1230)
Q Consensus 427 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~---~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 499 (1230)
..+|+.|+|++|++.+|+.|++|||.++... ...+ ++.++++..++. +++.......+.+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~l~~~~~~~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALW-------NEVKDKLNTNALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCc-------hhhHHHHhCCcccCCHHHH
Confidence 5678899999999999989999999976321 1111 122222222211 1112334557789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHH
Q 000909 500 QRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDL 578 (1230)
Q Consensus 500 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 578 (1230)
||++|||||+++|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999999
Q ss_pred HhhcCcHH
Q 000909 579 INRIDGHY 586 (1230)
Q Consensus 579 ~~~~~~~~ 586 (1230)
.++....|
T Consensus 237 ~~~~~~~~ 244 (254)
T PRK14273 237 FFNPKNTK 244 (254)
T ss_pred HhCCCChH
Confidence 76434333
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=368.75 Aligned_cols=203 Identities=33% Similarity=0.556 Sum_probs=174.4
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcce
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1071 (1230)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 578999999963 3599999999999999999999999999999999999999999999999999776543 57899
Q ss_pred EEcccccCCc-ccHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHH
Q 000909 1072 LVSQEPVIYA-GNIRDNIVFGKL--DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARA 1144 (1230)
Q Consensus 1072 ~VpQdp~Lf~-gTIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARA 1144 (1230)
|+||++.+|. .|++||+.++.. ..+ ++++.++++..++.++.. .....||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr~~lara 144 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLD-----------RKPKQLSGGQRQRVALGRA 144 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHh-----------CChhhCCHHHHHHHHHHHH
Confidence 9999999885 599999986421 112 223455566666655433 3345799999999999999
Q ss_pred HccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCcEEEEec
Q 000909 1145 IIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERG 1210 (1230)
Q Consensus 1145 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~G 1210 (1230)
++++|++|||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999874 37999999999999876 7999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=375.59 Aligned_cols=220 Identities=27% Similarity=0.440 Sum_probs=187.6
Q ss_pred cCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc--C---CCCeEEECCeecCCC--
Q 000909 989 SGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD--V---EQGSVRVDGMDVREL-- 1061 (1230)
Q Consensus 989 ~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~--p---~~G~I~idG~di~~i-- 1061 (1230)
+|.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++...
T Consensus 2 ~~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 2 NNKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred CcEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 367999999999963 359999999999999999999999999999999999986 4 689999999999753
Q ss_pred ChHHHhhcceEEcccccCCc-ccHHHHhccCCC--C-CC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCCh
Q 000909 1062 DVHWYRKHTALVSQEPVIYA-GNIRDNIVFGKL--D-AS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSG 1133 (1230)
Q Consensus 1062 ~~~~lR~~i~~VpQdp~Lf~-gTIreNl~~g~~--~-~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSg 1133 (1230)
....+|++++|+||++.+|. .|++||+.++.. . .+ ++++.++++..++.+++.. .....+.+|||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~ 151 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSG 151 (252)
T ss_pred ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCH
Confidence 44577899999999999998 599999986421 1 11 2345566666666544322 22345678999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCH
Q 000909 1134 GQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTY 1212 (1230)
Q Consensus 1134 GQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~ 1212 (1230)
|||||++||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+. .||++++|++|+|++.|++
T Consensus 152 G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14256 152 GQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGET 231 (252)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999999877889999999999986 4899999999999999999
Q ss_pred hHHhhc
Q 000909 1213 AQLTHM 1218 (1230)
Q Consensus 1213 ~eLl~~ 1218 (1230)
+++...
T Consensus 232 ~~~~~~ 237 (252)
T PRK14256 232 KKIFTT 237 (252)
T ss_pred HHHHhC
Confidence 999765
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=383.80 Aligned_cols=214 Identities=26% Similarity=0.450 Sum_probs=183.1
Q ss_pred CcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhc
Q 000909 990 GKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKH 1069 (1230)
Q Consensus 990 g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~ 1069 (1230)
..|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+...+ ...|++
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ 81 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQR 81 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhc
Confidence 35999999999963 45999999999999999999999999999999999999999999999999997755 457899
Q ss_pred ceEEcccccCCc-ccHHHHhccCCC--CCCHHH----HHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHH
Q 000909 1070 TALVSQEPVIYA-GNIRDNIVFGKL--DASENE----VVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIA 1142 (1230)
Q Consensus 1070 i~~VpQdp~Lf~-gTIreNl~~g~~--~~sd~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalA 1142 (1230)
++|+||+|.+|. .|++||+.+... ..+..+ +.++++..++. +..++.+ .+||||||||++||
T Consensus 82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~----~~LS~G~~qrl~la 150 (306)
T PRK13537 82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE-------NKADAKV----GELSGGMKRRLTLA 150 (306)
T ss_pred EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-------hHhcCch----hhCCHHHHHHHHHH
Confidence 999999999886 699999975221 223222 33344444433 3344444 47999999999999
Q ss_pred HHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHhhc
Q 000909 1143 RAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1143 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1218 (1230)
|||+++|++|+|||||++||+.+.+.+++.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 151 ~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 151 RALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999999999875 48899999999999965 899999999999999999999765
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=374.53 Aligned_cols=218 Identities=30% Similarity=0.506 Sum_probs=187.7
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCC-----CCeEEECCeecCCC--Ch
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVE-----QGSVRVDGMDVREL--DV 1063 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~-----~G~I~idG~di~~i--~~ 1063 (1230)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|+ +|+|.+||.++.+. +.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999963 35999999999999999999999999999999999999997 69999999998653 45
Q ss_pred HHHhhcceEEcccccCCcccHHHHhccCCC--CC-C----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHH
Q 000909 1064 HWYRKHTALVSQEPVIYAGNIRDNIVFGKL--DA-S----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQR 1136 (1230)
Q Consensus 1064 ~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~--~~-s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 1136 (1230)
..+|+.++||||+|.+|+.|++||+.++.. .. . ++.+.++++..++++.+. ......+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHH
Confidence 678999999999999999999999987531 11 1 223444555566654433 224456778999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHH
Q 000909 1137 QRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQL 1215 (1230)
Q Consensus 1137 QrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1215 (1230)
||++||||++++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987668999999999999876 599999999999999999998
Q ss_pred hhc
Q 000909 1216 THM 1218 (1230)
Q Consensus 1216 l~~ 1218 (1230)
...
T Consensus 234 ~~~ 236 (251)
T PRK14249 234 FSR 236 (251)
T ss_pred HhC
Confidence 765
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=391.34 Aligned_cols=221 Identities=24% Similarity=0.415 Sum_probs=189.0
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhhe
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREM 433 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i 433 (1230)
-|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.+++...++++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4889999999963 4699999999999999999999999999999999999999999999999999998888899999
Q ss_pred EEEccCccc-cchhHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhcc
Q 000909 434 GLVSQEHAL-FGTSIKDNIMFGKLDA--TMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIK 510 (1230)
Q Consensus 434 ~~v~Q~~~l-~~~ti~~Ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 510 (1230)
|||+|++.+ ++.|++||+.++.... .... ........+.+.++.+ |+.........+||||||||++|||||++
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~-~~~~~~~~v~~~le~v--gl~~~~~~~~~~LSgGerQRv~IArAL~~ 156 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDT-WTETDRAAVERAMERT--GVAQFADRPVTSLSGGERQRVLLARALAQ 156 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccC-CCHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 999999987 5679999999875311 0000 0001112223344444 66656677788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 511 NPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 511 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
+|++|||||||++||+.++..+.+.|+++. +|+|+|++||+++.+.. ||++++|++|++++.|++++++.
T Consensus 157 ~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 157 ATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 999999999999999999999999999874 58899999999999955 99999999999999999999876
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=368.94 Aligned_cols=207 Identities=33% Similarity=0.531 Sum_probs=174.0
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHH---HHhh
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLK---WVRR 431 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~---~~r~ 431 (1230)
|+++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6899999999642 23599999999999999999999999999999999999999999999999999776543 4678
Q ss_pred heEEEccCccccc-hhHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHh
Q 000909 432 EMGLVSQEHALFG-TSIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAI 508 (1230)
Q Consensus 432 ~i~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 508 (1230)
+++|++|++.+|. .|++||+.++... ...++. ...+.+.++.+ |++........+||||||||++|||||
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral 153 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDA-----NERVSAALEKV--GLEGKAHALPMQLSGGEQQRVAIARAI 153 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 9999999999886 4999999875211 111111 11223445555 666666677789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeE
Q 000909 509 IKNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCL 569 (1230)
Q Consensus 509 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i 569 (1230)
+.+|+++||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 154 VHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999998764 48999999999999875 999999999975
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=375.11 Aligned_cols=222 Identities=30% Similarity=0.474 Sum_probs=186.4
Q ss_pred cccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCeecCC--C
Q 000909 352 RGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD-----ADDGIVRIDGVDIRR--L 424 (1230)
Q Consensus 352 ~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~i~~--~ 424 (1230)
.+.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 356999999999963 359999999999999999999999999999999999986 589999999999863 4
Q ss_pred CHHHHhhheEEEccCccccchhHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhC--CCcccchhcCCCCCCChhHH
Q 000909 425 QLKWVRREMGLVSQEHALFGTSIKDNIMFGKL---DATMDEVIAAATAANAHNFIRQL--PEGYETKVGERGALLSGGQK 499 (1230)
Q Consensus 425 ~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGqk 499 (1230)
+...+|++|+|++|++.+|+.|++||+.++.. ..+.++..+ .+.+.++.+ +.++.+..++...+||||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~ 162 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDE-----RVEWALTKAALWNEVKDKLHQSGYSLSGGQQ 162 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHH-----HHHHHHHHcCCChhhHHHHhcCCCCCCHHHH
Confidence 55678889999999999999999999987532 112222111 112223332 11234556778889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHH
Q 000909 500 QRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDL 578 (1230)
Q Consensus 500 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 578 (1230)
||++||||++.+|+++||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 163 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (260)
T PRK10744 163 QRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTI 242 (260)
T ss_pred HHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987668899999999999865 999999999999999999998
Q ss_pred Hhh
Q 000909 579 INR 581 (1230)
Q Consensus 579 ~~~ 581 (1230)
...
T Consensus 243 ~~~ 245 (260)
T PRK10744 243 FTK 245 (260)
T ss_pred HhC
Confidence 764
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=376.03 Aligned_cols=213 Identities=25% Similarity=0.461 Sum_probs=186.8
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcce
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1071 (1230)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+++...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 46999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEcccccCCcc-cHHHHhccCCCC----------CCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHH
Q 000909 1072 LVSQEPVIYAG-NIRDNIVFGKLD----------ASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIA 1140 (1230)
Q Consensus 1072 ~VpQdp~Lf~g-TIreNl~~g~~~----------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 1140 (1230)
|+||++.+|.+ |++||+.++... ..++++.++++..++.++.+ .....||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-----------RRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-----------CCcccCCHHHHHHHH
Confidence 99999998876 999999875311 11234556666666654432 345679999999999
Q ss_pred HHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHhhc
Q 000909 1141 IARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1141 lARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1218 (1230)
||||++++|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 228 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP 228 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCH
Confidence 9999999999999999999999999999999998865 48999999999999865 799999999999999999998753
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=379.04 Aligned_cols=217 Identities=27% Similarity=0.464 Sum_probs=182.7
Q ss_pred EEEEEEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCC----ChHH
Q 000909 992 IEMRRVDFAYPSRP--DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVREL----DVHW 1065 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i----~~~~ 1065 (1230)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997421 13699999999999999999999999999999999999999999999999999764 3567
Q ss_pred HhhcceEEcccc--cCCcccHHHHhccCCC--CCCHHHH----HHHHHHhchHHHHHhccccccccccCCCCCCChhHHH
Q 000909 1066 YRKHTALVSQEP--VIYAGNIRDNIVFGKL--DASENEV----VEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQ 1137 (1230)
Q Consensus 1066 lR~~i~~VpQdp--~Lf~gTIreNl~~g~~--~~sd~ei----~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 1137 (1230)
+|++++|+||+| .+|+.|+++|+.++.. ..+.++. .++++..++.+ .........|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHHH
Confidence 889999999998 6888999999986421 2233332 23333333321 1224456789999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHH
Q 000909 1138 RIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQL 1215 (1230)
Q Consensus 1138 rlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1215 (1230)
|++||||++++|++|||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999875 47899999999998864 799999999999999999998
Q ss_pred hhc
Q 000909 1216 THM 1218 (1230)
Q Consensus 1216 l~~ 1218 (1230)
++.
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 764
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=391.85 Aligned_cols=218 Identities=29% Similarity=0.467 Sum_probs=187.3
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhhe
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREM 433 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i 433 (1230)
.|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. +++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 4899999999963 3599999999999999999999999999999999999999999999999999876653 4689
Q ss_pred EEEccCccccch-hHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhcc
Q 000909 434 GLVSQEHALFGT-SIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIK 510 (1230)
Q Consensus 434 ~~v~Q~~~l~~~-ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 510 (1230)
+||+|++.+|+. |++|||.|+... .+.++.. ..+.+.++.+ |++........+||||||||++|||||+.
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~-----~~~~~~l~~l--gL~~~~~~~~~~LSgGq~QRvaLAraL~~ 150 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEIN-----QRVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHH-----HHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999975 999999986421 1222211 1233445555 77766778888999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhhcC
Q 000909 511 NPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRID 583 (1230)
Q Consensus 511 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 583 (1230)
+|++||||||||+||+.+++.+.+.|+++. .|+|+|+|||+++.+.. ||+|++|++|++++.|+++++...+.
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~ 226 (369)
T PRK11000 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226 (369)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 999999999999999999999999998764 38999999999998865 99999999999999999999976533
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=392.17 Aligned_cols=199 Identities=32% Similarity=0.497 Sum_probs=174.7
Q ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHH----hhcceEEcccccCCc-cc
Q 000909 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWY----RKHTALVSQEPVIYA-GN 1083 (1230)
Q Consensus 1009 vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~l----R~~i~~VpQdp~Lf~-gT 1083 (1230)
+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.|+.+.+...+ |++++||||++.+|. .|
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T 122 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence 7999999999999999999999999999999999999999999999999998887654 357999999999997 59
Q ss_pred HHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecc
Q 000909 1084 IRDNIVFGKL--DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEA 1157 (1230)
Q Consensus 1084 IreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p~ILlLDEa 1157 (1230)
++||+.++.. ..+ ++++.++++..++.++..+. ..+||||||||++|||||+.+|+|||||||
T Consensus 123 v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~-----------~~~LSgGq~QRv~LArAL~~~P~iLLLDEP 191 (400)
T PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSY-----------PDELSGGMRQRVGLARALAINPDILLMDEA 191 (400)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcC-----------cccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 9999987521 112 24456667777776554433 357999999999999999999999999999
Q ss_pred cCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHhhc
Q 000909 1158 TSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1158 TSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1218 (1230)
||+||+.+.+.+++.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|++++++.+
T Consensus 192 ts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 192 FSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence 99999999999999999874 48999999999999864 799999999999999999999876
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=373.27 Aligned_cols=213 Identities=29% Similarity=0.462 Sum_probs=181.2
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCC--------h
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELD--------V 1063 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~--------~ 1063 (1230)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .
T Consensus 4 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 899999999963 35999999999999999999999999999999999999999999999999987542 3
Q ss_pred HHHhhcceEEcccccCCc-ccHHHHhccCC---CCCCHH----HHHHHHHHhchHHHHHhccccccccccCCCCCCChhH
Q 000909 1064 HWYRKHTALVSQEPVIYA-GNIRDNIVFGK---LDASEN----EVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQ 1135 (1230)
Q Consensus 1064 ~~lR~~i~~VpQdp~Lf~-gTIreNl~~g~---~~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 1135 (1230)
..+|++++||||+|.+|. .|++||+.++. .....+ .+.++++..+ ++........+|||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LS~Gq 149 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVG-----------LAGKETSYPRRLSGGQ 149 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------CcchhhCChhhCChHH
Confidence 567889999999999886 69999997641 112222 2233333333 3333345567899999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHh
Q 000909 1136 RQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYA 1213 (1230)
Q Consensus 1136 rQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~ 1213 (1230)
|||++||||++.+|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 229 (250)
T PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999875 48899999999999865 7999999999999999999
Q ss_pred HHhhc
Q 000909 1214 QLTHM 1218 (1230)
Q Consensus 1214 eLl~~ 1218 (1230)
++.+.
T Consensus 230 ~~~~~ 234 (250)
T PRK11264 230 ALFAD 234 (250)
T ss_pred HHhcC
Confidence 98765
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=378.45 Aligned_cols=213 Identities=28% Similarity=0.442 Sum_probs=182.3
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecC--CCChHHHhhc
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVR--ELDVHWYRKH 1069 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~--~i~~~~lR~~ 1069 (1230)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. +.+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 789999999963 35999999999999999999999999999999999999999999999999985 3445678899
Q ss_pred ceEEccccc--CCcccHHHHhccCC--CCCCH----HHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHH
Q 000909 1070 TALVSQEPV--IYAGNIRDNIVFGK--LDASE----NEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAI 1141 (1230)
Q Consensus 1070 i~~VpQdp~--Lf~gTIreNl~~g~--~~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlal 1141 (1230)
++||||+|. ++..|+.+|+.++. ...+. +++.++++..++.++. .....+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-----------HQPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-----------cCCchhCCHHHHHHHHH
Confidence 999999985 67789999997641 12222 2344556666665442 23356799999999999
Q ss_pred HHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHhhc
Q 000909 1142 ARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1142 ARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1218 (1230)
||||+.+|+||||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999999874 48899999999999865 899999999999999999998764
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=374.24 Aligned_cols=218 Identities=28% Similarity=0.449 Sum_probs=187.3
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CCCeEEECCeecCCC--Ch
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV-----EQGSVRVDGMDVREL--DV 1063 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i--~~ 1063 (1230)
.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5899999999963 3599999999999999999999999999999999999985 799999999999653 34
Q ss_pred HHHhhcceEEcccccCCcccHHHHhccCCC--CC-C----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHH
Q 000909 1064 HWYRKHTALVSQEPVIYAGNIRDNIVFGKL--DA-S----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQR 1136 (1230)
Q Consensus 1064 ~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~--~~-s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 1136 (1230)
..+|++++|+||++.+|..|+++|+.++.. .. + .+++.++++.+++.+.+.. ........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 567899999999999999999999986521 11 1 2345566777766443322 23345678999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHH
Q 000909 1137 QRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQL 1215 (1230)
Q Consensus 1137 QrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1215 (1230)
||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777999999999999865 799999999999999999999
Q ss_pred hhc
Q 000909 1216 THM 1218 (1230)
Q Consensus 1216 l~~ 1218 (1230)
...
T Consensus 234 ~~~ 236 (251)
T PRK14270 234 FLE 236 (251)
T ss_pred hcC
Confidence 765
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=371.07 Aligned_cols=216 Identities=25% Similarity=0.424 Sum_probs=186.1
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHH-Hhhhe
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKW-VRREM 433 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~-~r~~i 433 (1230)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 578999999963 35999999999999999999999999999999999999999999999999998776654 35679
Q ss_pred EEEccCccccch-hHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhcc
Q 000909 434 GLVSQEHALFGT-SIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIK 510 (1230)
Q Consensus 434 ~~v~Q~~~l~~~-ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 510 (1230)
+|++|++.+|++ |++||+.++.+. ...++. ...+.+.++.+ |++........+||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKER-----EEKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999986 999999875321 111111 12234556666 77777788889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 511 NPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 511 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
+|++|||||||++||+.+.+.+.+.+++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999998764 58999999999988765 99999999999999999988754
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=376.86 Aligned_cols=222 Identities=31% Similarity=0.473 Sum_probs=183.9
Q ss_pred EEEEEEEEECCCC------CCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHH
Q 000909 992 IEMRRVDFAYPSR------PDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW 1065 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~------~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~ 1065 (1230)
|+++||+++|+.. .+.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999631 1346999999999999999999999999999999999999999999999999998876543
Q ss_pred ---HhhcceEEccccc--CC-cccHHHHhccCCC---CC----CHHHHHHHHHHhchHHHHHhccccccccccCCCCCCC
Q 000909 1066 ---YRKHTALVSQEPV--IY-AGNIRDNIVFGKL---DA----SENEVVEAARAANAHEFISSLKDGYETECGERGVQLS 1132 (1230)
Q Consensus 1066 ---lR~~i~~VpQdp~--Lf-~gTIreNl~~g~~---~~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LS 1132 (1230)
+|++++|+||+|. ++ ..|++||+.++.. .. .++++.++++..++.+ ......+..||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhCC
Confidence 6788999999983 44 3699999964311 11 1233444444444421 12344567899
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCcEEEEe
Q 000909 1133 GGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKK-LDSIALVADGRVVER 1209 (1230)
Q Consensus 1133 gGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~ 1209 (1230)
||||||++||||++++|++|||||||++||+++...+.+.|++..+ ++|+|+|||+++.+.. ||++++|++|++++.
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999999999998753 7899999999999975 799999999999999
Q ss_pred cCHhHHhhcccccH
Q 000909 1210 GTYAQLTHMRGAFF 1223 (1230)
Q Consensus 1210 Gt~~eLl~~~g~y~ 1223 (1230)
|++++++.....|.
T Consensus 233 g~~~~~~~~~~~~~ 246 (265)
T TIGR02769 233 CDVAQLLSFKHPAG 246 (265)
T ss_pred CCHHHHcCCCCHHH
Confidence 99999987544333
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=370.12 Aligned_cols=219 Identities=23% Similarity=0.365 Sum_probs=181.7
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHH-Hhhc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW-YRKH 1069 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~-lR~~ 1069 (1230)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+... +|++
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 3899999999963 35999999999999999999999999999999999999999999999999998887654 6788
Q ss_pred ceEEcccccCCcc-cHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccC
Q 000909 1070 TALVSQEPVIYAG-NIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRN 1148 (1230)
Q Consensus 1070 i~~VpQdp~Lf~g-TIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~ 1148 (1230)
++|+||++.+|.+ |+++|+.++....+.++..+.+ .+.++.++. ++.........||||||||++||||++++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~~-l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFPR-LHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHH-----HHHHHHHHH-HHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999985 9999998753222222222211 111222211 11112234568999999999999999999
Q ss_pred CCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhHHhhc
Q 000909 1149 PTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1149 p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eLl~~ 1218 (1230)
|+||||||||++||+++.+.+.+.|++.. +++|+|++||+++.+. .||++++|++|++++.|+++++.+.
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999865 4899999999999765 5799999999999999999999754
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=377.65 Aligned_cols=218 Identities=25% Similarity=0.431 Sum_probs=185.4
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCCCeEEECCeecCC--CCh
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD-----VEQGSVRVDGMDVRE--LDV 1063 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~~ 1063 (1230)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999963 359999999999999999999999999999999999987 699999999999853 455
Q ss_pred HHHhhcceEEcccccCCcccHHHHhccCCC--CCCH-----HHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHH
Q 000909 1064 HWYRKHTALVSQEPVIYAGNIRDNIVFGKL--DASE-----NEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQR 1136 (1230)
Q Consensus 1064 ~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~--~~sd-----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 1136 (1230)
..+|++++|+||+|.+|..|++||+.++.. +.++ +.+.++++..++.+ ++.......+..||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-------ELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-------hHHHHHhcCcccCCHHHH
Confidence 678899999999999999999999986421 2222 12334444443322 222334456778999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHH
Q 000909 1137 QRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQL 1215 (1230)
Q Consensus 1137 QrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1215 (1230)
||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 799999999999999999999
Q ss_pred hhc
Q 000909 1216 THM 1218 (1230)
Q Consensus 1216 l~~ 1218 (1230)
...
T Consensus 254 ~~~ 256 (271)
T PRK14238 254 FSN 256 (271)
T ss_pred HcC
Confidence 865
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=376.64 Aligned_cols=221 Identities=28% Similarity=0.456 Sum_probs=188.1
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhhe
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREM 433 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i 433 (1230)
-|+++||+++|++....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743234599999999999999999999999999999999999999999999999999877777788999
Q ss_pred EEEccCcc--ccchhHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhc
Q 000909 434 GLVSQEHA--LFGTSIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAII 509 (1230)
Q Consensus 434 ~~v~Q~~~--l~~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 509 (1230)
+|++|+|. ++..|+.|||.++.. ..+.++..+. +.+.++.+ |+..........||||||||++|||||+
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lAraL~ 156 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR-----VDEALLAV--NMLDFKTREPARLSGGQKQRVAVAGIIA 156 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHC--CCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999983 567899999987532 1223332221 12233333 5555566677899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhccCEEEEEeCCeEEEecChhHHHhh
Q 000909 510 KNPVILLLDEATSALDSESETLVQNALDQASL--GRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 510 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 581 (1230)
++|+++||||||++||+.+.+.+.+.++++.+ |+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 157 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 157 LRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999987643 8999999999999988999999999999999999998763
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=372.77 Aligned_cols=213 Identities=23% Similarity=0.441 Sum_probs=180.3
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecC------CCChHH
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVR------ELDVHW 1065 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~------~i~~~~ 1065 (1230)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. ..+...
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 789999999963 35999999999999999999999999999999999999999999999999873 123457
Q ss_pred HhhcceEEcccccCCcc-cHHHHhccCC---CCCCH----HHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHH
Q 000909 1066 YRKHTALVSQEPVIYAG-NIRDNIVFGK---LDASE----NEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQ 1137 (1230)
Q Consensus 1066 lR~~i~~VpQdp~Lf~g-TIreNl~~g~---~~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 1137 (1230)
+|++++|+||+|.+|.+ |++||+.++. .+... +++.++++..++.++ ......+|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPY-----------ADRFPLHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHH
Confidence 78899999999999975 9999996421 11222 223334444444333 34445689999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHH
Q 000909 1138 RIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQL 1215 (1230)
Q Consensus 1138 rlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1215 (1230)
|++||||++++|++|||||||++||+++...+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999999999999875 48999999999999865 899999999999999999998
Q ss_pred hhc
Q 000909 1216 THM 1218 (1230)
Q Consensus 1216 l~~ 1218 (1230)
.+.
T Consensus 229 ~~~ 231 (242)
T PRK11124 229 TQP 231 (242)
T ss_pred cCc
Confidence 654
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=385.20 Aligned_cols=224 Identities=26% Similarity=0.413 Sum_probs=186.2
Q ss_pred cEEEEEEEEECCCCC-------CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCCh
Q 000909 991 KIEMRRVDFAYPSRP-------DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDV 1063 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~-------~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~ 1063 (1230)
-|+++|++++|+.+. ..++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.+||.|+.+++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 389999999996321 2369999999999999999999999999999999999999999999999999998875
Q ss_pred H---HHhhcceEEccccc--CCc-ccHHHHhccC---CCCCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCC
Q 000909 1064 H---WYRKHTALVSQEPV--IYA-GNIRDNIVFG---KLDAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQ 1130 (1230)
Q Consensus 1064 ~---~lR~~i~~VpQdp~--Lf~-gTIreNl~~g---~~~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~ 1130 (1230)
. .+|++++||||||. |+. -|+.+|+..+ ..... .+++.++++.+++.+ ..++. ....
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~----~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYDR----YPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhcC----CCcc
Confidence 3 56789999999993 554 4899888531 11112 234566666666632 12333 3467
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCcEEE
Q 000909 1131 LSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKK-LDSIALVADGRVV 1207 (1230)
Q Consensus 1131 LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Iv 1207 (1230)
||||||||++|||||+.+|++||+||||++||..+.+.|.+.|++..+ |.|+|+|||+++.+.. ||+|+||++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998753 8999999999999975 8999999999999
Q ss_pred EecCHhHHhhcc-cccHH
Q 000909 1208 ERGTYAQLTHMR-GAFFN 1224 (1230)
Q Consensus 1208 e~Gt~~eLl~~~-g~y~~ 1224 (1230)
|.|++++++++. ..|.+
T Consensus 235 e~g~~~~~~~~p~hpyt~ 252 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQ 252 (327)
T ss_pred EECCHHHHhcCCCCHHHH
Confidence 999999999763 34544
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=380.79 Aligned_cols=220 Identities=25% Similarity=0.426 Sum_probs=182.6
Q ss_pred cCcEEEEEEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCC----C-
Q 000909 989 SGKIEMRRVDFAYPSRP--DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRE----L- 1061 (1230)
Q Consensus 989 ~g~I~f~~Vsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~----i- 1061 (1230)
.|.|+++||+++|++++ ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 46799999999997432 1359999999999999999999999999999999999999999999999999852 2
Q ss_pred ChHHHhhcceEEcccc--cCCcccHHHHhccCCC--CCCHHHHH----HHHHHhchHHHHHhccccccccccCCCCCCCh
Q 000909 1062 DVHWYRKHTALVSQEP--VIYAGNIRDNIVFGKL--DASENEVV----EAARAANAHEFISSLKDGYETECGERGVQLSG 1133 (1230)
Q Consensus 1062 ~~~~lR~~i~~VpQdp--~Lf~gTIreNl~~g~~--~~sd~ei~----~al~~a~l~~~i~~lp~gldt~vge~G~~LSg 1133 (1230)
+...+|++++|+||+| .+|..|++||+.++.. ....++.. +.++..++ |.+ ........|||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~---~~~~~~~~LS~ 153 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL-------PED---YVKRSPFELSG 153 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------Chh---HhcCChhhCCH
Confidence 4567888999999998 4778899999987532 22333322 22222222 211 22345678999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeCcEEEEec
Q 000909 1134 GQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIK-KLDSIALVADGRVVERG 1210 (1230)
Q Consensus 1134 GQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~G 1210 (1230)
|||||++|||||+++|++|||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999875 3789999999999875 57999999999999999
Q ss_pred CHhHHhhc
Q 000909 1211 TYAQLTHM 1218 (1230)
Q Consensus 1211 t~~eLl~~ 1218 (1230)
+++++++.
T Consensus 234 ~~~~~~~~ 241 (289)
T PRK13645 234 SPFEIFSN 241 (289)
T ss_pred CHHHHhcC
Confidence 99988653
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=367.54 Aligned_cols=201 Identities=31% Similarity=0.490 Sum_probs=174.7
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChH---HHhh
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVH---WYRK 1068 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~lR~ 1068 (1230)
|+++|++++|+. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 24699999999999999999999999999999999999999999999999999887643 4688
Q ss_pred cceEEcccccCCc-ccHHHHhccCCC------CCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHH
Q 000909 1069 HTALVSQEPVIYA-GNIRDNIVFGKL------DASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAI 1141 (1230)
Q Consensus 1069 ~i~~VpQdp~Lf~-gTIreNl~~g~~------~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlal 1141 (1230)
+++|+||+|.+|. .|++||+.++.. ...+++++++++..++.++..+. ..+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAF-----------PEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHHHHH
Confidence 9999999999986 699999986421 11234567777777776654433 34799999999999
Q ss_pred HHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCcE
Q 000909 1142 ARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGR 1205 (1230)
Q Consensus 1142 ARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~ 1205 (1230)
||||+++|++|||||||++||+++...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999874 48999999999999986 79999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=374.25 Aligned_cols=219 Identities=24% Similarity=0.442 Sum_probs=187.5
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CCCeEEECCeecCCC--Ch
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV-----EQGSVRVDGMDVREL--DV 1063 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i--~~ 1063 (1230)
.|+++||+++|++ .++|+|+||+|++||.+||+||||||||||+++|.|+.+| ++|+|.+||.++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999963 3599999999999999999999999999999999999763 489999999999876 45
Q ss_pred HHHhhcceEEcccccCCcccHHHHhccCCC--CC-C----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHH
Q 000909 1064 HWYRKHTALVSQEPVIYAGNIRDNIVFGKL--DA-S----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQR 1136 (1230)
Q Consensus 1064 ~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~--~~-s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 1136 (1230)
...|+.++|+||+|.+|+.|++||+.++.. +. . ++.+.++++..++.+.+ .+..+..+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV-------KDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh-------HHHhhcChhhCCHHHH
Confidence 677889999999999999999999987521 11 1 22345555555554332 2334566778999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHH
Q 000909 1137 QRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQL 1215 (1230)
Q Consensus 1137 QrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1215 (1230)
||++||||++.+|+++||||||++||+++...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 9999999999999999999999999999999999999988777999999999999964 899999999999999999999
Q ss_pred hhcc
Q 000909 1216 THMR 1219 (1230)
Q Consensus 1216 l~~~ 1219 (1230)
.++.
T Consensus 236 ~~~~ 239 (253)
T PRK14261 236 FENP 239 (253)
T ss_pred HhCC
Confidence 8653
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=369.93 Aligned_cols=216 Identities=28% Similarity=0.489 Sum_probs=186.4
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheE
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+... ++.++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 689999999963 45999999999999999999999999999999999999999999999999998766544 45899
Q ss_pred EEccCcccc-chhHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccC
Q 000909 435 LVSQEHALF-GTSIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKN 511 (1230)
Q Consensus 435 ~v~Q~~~l~-~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 511 (1230)
|++|++.++ ..|++||+.++.. ....++. ...+.+.++.+ |++...+..+.+||||||||++||||++++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEA-----RERIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999875 5699999986532 1112211 12234556666 777778888899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhccCEEEEEeCCeEEEecChhHHHhh
Q 000909 512 PVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 512 ~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 581 (1230)
|+++||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999998864 48999999999999988999999999999999999988763
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=366.59 Aligned_cols=201 Identities=33% Similarity=0.560 Sum_probs=172.5
Q ss_pred EEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcceE
Q 000909 993 EMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTAL 1072 (1230)
Q Consensus 993 ~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~ 1072 (1230)
+++||+++|++. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|++++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 468999999642 2469999999999999999999999999999999999999999999999999988888888999999
Q ss_pred Ecccc--cCCcccHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHH
Q 000909 1073 VSQEP--VIYAGNIRDNIVFGKL--DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARA 1144 (1230)
Q Consensus 1073 VpQdp--~Lf~gTIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARA 1144 (1230)
+||+| .++..|+++|+.++.. ..+ ++++.+.++..++.+++ ......||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLR-----------DRSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCHHHHHHHHHHHH
Confidence 99998 3678899999986421 122 22344555555554443 33456899999999999999
Q ss_pred HccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCcE
Q 000909 1145 IIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGR 1205 (1230)
Q Consensus 1145 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~ 1205 (1230)
|+++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999875 47999999999999987 89999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=375.43 Aligned_cols=220 Identities=30% Similarity=0.458 Sum_probs=185.1
Q ss_pred cccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecCC--C
Q 000909 352 RGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDA-----DDGIVRIDGVDIRR--L 424 (1230)
Q Consensus 352 ~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~i~~--~ 424 (1230)
.+.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 357999999999963 4599999999999999999999999999999999999975 89999999999865 3
Q ss_pred CHHHHhhheEEEccCccccchhHHHHHhcCCC--CC--CHHHHHHHHHHHhHHHHHHhCCCcc----cchhcCCCCCCCh
Q 000909 425 QLKWVRREMGLVSQEHALFGTSIKDNIMFGKL--DA--TMDEVIAAATAANAHNFIRQLPEGY----ETKVGERGALLSG 496 (1230)
Q Consensus 425 ~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~--~~--~~~~~~~~~~~~~~~~~i~~l~~g~----~t~~~~~g~~LSg 496 (1230)
+...+|+.++|++|++.+|+.|++||+.++.. .. ...+..+ .+.+.++.+ |+ .+..++.+.+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDE-----IVETSLRKA--GLWEEVKDRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHH-----HHHHHHHHc--CCchhhhHHhhCCcccCCH
Confidence 45667889999999999998899999987531 10 1111111 112223333 33 2345677889999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecCh
Q 000909 497 GQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTH 575 (1230)
Q Consensus 497 Gqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~ 575 (1230)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999987668899999999999965 999999999999999999
Q ss_pred hHHHhh
Q 000909 576 NDLINR 581 (1230)
Q Consensus 576 ~~l~~~ 581 (1230)
+++...
T Consensus 247 ~~~~~~ 252 (267)
T PRK14235 247 EKMFTN 252 (267)
T ss_pred HHHHhC
Confidence 998753
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=385.00 Aligned_cols=225 Identities=24% Similarity=0.361 Sum_probs=184.1
Q ss_pred EEEEEEEEECCCCCC-cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc----CCCCeEEECCeecCCCChHHH
Q 000909 992 IEMRRVDFAYPSRPD-ALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD----VEQGSVRVDGMDVRELDVHWY 1066 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~-~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~----p~~G~I~idG~di~~i~~~~l 1066 (1230)
|+++||+++|+.+.. .++|+||||+|++||.+||||+||||||||+++|+|+++ |++|+|.+||.|+.+++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 799999999974322 359999999999999999999999999999999999998 489999999999999987766
Q ss_pred hh----cceEEccccc--CCc-ccHHHHhc----cCCC---CCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCC
Q 000909 1067 RK----HTALVSQEPV--IYA-GNIRDNIV----FGKL---DASENEVVEAARAANAHEFISSLKDGYETECGERGVQLS 1132 (1230)
Q Consensus 1067 R~----~i~~VpQdp~--Lf~-gTIreNl~----~g~~---~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LS 1132 (1230)
|+ +++||||+|. ++. -|+.+|+. .... ....+++.++++.+++.+... .....+.+||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPAS--------RLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhCCchhCC
Confidence 54 6999999995 433 35655543 2111 112344666777777643211 1234567899
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeCcEEEEe
Q 000909 1133 GGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIK-KLDSIALVADGRVVER 1209 (1230)
Q Consensus 1133 gGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~ 1209 (1230)
||||||++|||||+.+|++||+||||++||+.+...+.+.|+++. .|.|+|+|||+++.+. .||||+||++|+|+|.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999875 3789999999999985 5899999999999999
Q ss_pred cCHhHHhhc-ccccHH
Q 000909 1210 GTYAQLTHM-RGAFFN 1224 (1230)
Q Consensus 1210 Gt~~eLl~~-~g~y~~ 1224 (1230)
|++++++++ ...|.+
T Consensus 236 g~~~~~~~~p~hpyt~ 251 (326)
T PRK11022 236 GKAHDIFRAPRHPYTQ 251 (326)
T ss_pred CCHHHHhhCCCChHHH
Confidence 999999976 334543
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=369.70 Aligned_cols=205 Identities=33% Similarity=0.474 Sum_probs=174.5
Q ss_pred EEEEEEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcc
Q 000909 992 IEMRRVDFAYPSRP-DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1070 (1230)
|+++|++++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. +++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 47899999996311 1469999999999999999999999999999999999999999999999999863 46789
Q ss_pred eEEcccccCCc-ccHHHHhccCCC--CC----CHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHH
Q 000909 1071 ALVSQEPVIYA-GNIRDNIVFGKL--DA----SENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIAR 1143 (1230)
Q Consensus 1071 ~~VpQdp~Lf~-gTIreNl~~g~~--~~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalAR 1143 (1230)
+||||+|.+|. .|++||+.++.. .. .++++.++++..++.++..+ ...+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENA-----------YPHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------CcccCCHHHHHHHHHHH
Confidence 99999999987 699999976421 11 12345666666666554433 33579999999999999
Q ss_pred HHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEe--CcEEEEecCH
Q 000909 1144 AIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIK-KLDSIALVA--DGRVVERGTY 1212 (1230)
Q Consensus 1144 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~D~I~vl~--~G~Ive~Gt~ 1212 (1230)
||+++|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+. .||+|++|+ +|++++.++-
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999999864 3789999999999876 479999999 7999998764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=389.01 Aligned_cols=222 Identities=29% Similarity=0.473 Sum_probs=189.4
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhh
Q 000909 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRRE 432 (1230)
Q Consensus 353 ~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~ 432 (1230)
..|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.+||.++.+.+. .++.
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999963 358999999999999999999999999999999999999999999999999987664 4678
Q ss_pred eEEEccCccccch-hHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhc
Q 000909 433 MGLVSQEHALFGT-SIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAII 509 (1230)
Q Consensus 433 i~~v~Q~~~l~~~-ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 509 (1230)
||||+|++.+|+. |++|||.|+... .+..+..+ .+.+.++.+ |+.........+||||||||++|||||+
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~v~~~l~~l--~L~~~~~~~~~~LSgGq~QRVaLARAL~ 165 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS-----RVNEMLGLV--HMQEFAKRKPHQLSGGQRQRVALARSLA 165 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 9999999999976 999999987431 12222211 223445555 6766677888899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhhcCcHH
Q 000909 510 KNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRIDGHY 586 (1230)
Q Consensus 510 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 586 (1230)
.+|++||||||||+||+.+++.+.+.++++. .|.|+|+|||+++.+.. ||+|++|++|++++.|+++|+..++...|
T Consensus 166 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~~~~ 245 (377)
T PRK11607 166 KRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRY 245 (377)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCccHH
Confidence 9999999999999999999999988887653 47999999999999755 99999999999999999999987544333
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=366.68 Aligned_cols=202 Identities=31% Similarity=0.459 Sum_probs=173.5
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCCh---HHHhh
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDV---HWYRK 1068 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~---~~lR~ 1068 (1230)
|+++||+++|+++ +++|+|+||++++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999632 359999999999999999999999999999999999999999999999999987754 35788
Q ss_pred cceEEcccccCCc-ccHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHH
Q 000909 1069 HTALVSQEPVIYA-GNIRDNIVFGKL--DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAI 1141 (1230)
Q Consensus 1069 ~i~~VpQdp~Lf~-gTIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlal 1141 (1230)
+++||||+|.+|. .|++||+.++.. ..+ ++++.++++..++.+.... ...+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRA-----------LPAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------ChhhcCHHHHHHHHH
Confidence 9999999999998 499999986421 112 2345566666666554332 335799999999999
Q ss_pred HHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCcEE
Q 000909 1142 ARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGRV 1206 (1230)
Q Consensus 1142 ARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~I 1206 (1230)
|||++++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999874 58999999999999986 799999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=377.61 Aligned_cols=218 Identities=28% Similarity=0.471 Sum_probs=186.7
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecC--CCCHHHHhh
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIR--RLQLKWVRR 431 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~--~~~~~~~r~ 431 (1230)
-|+++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+++
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999963 245999999999999999999999999999999999999999999999999985 334567888
Q ss_pred heEEEccCc--cccchhHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHH
Q 000909 432 EMGLVSQEH--ALFGTSIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARA 507 (1230)
Q Consensus 432 ~i~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 507 (1230)
.++|++|++ .+++.|++||+.++... .+.++..+ .+.+.++.+ |+.......+.+||||||||++||||
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LS~G~~qrl~lara 155 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRK-----RVDNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGV 155 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHC--CChhhhhCCcccCCHHHHHHHHHHHH
Confidence 999999998 56788999999875321 22222211 122334555 67666778889999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-ccCEEEEEeCCeEEEecChhHHHh
Q 000909 508 IIKNPVILLLDEATSALDSESETLVQNALDQASL--GRTTLVVAHKLSTVR-NADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 508 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
|+.+|++|||||||++||+.+...+.+.++++.+ |+|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999988643 899999999999987 499999999999999999999876
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=336.65 Aligned_cols=219 Identities=28% Similarity=0.468 Sum_probs=187.2
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheE
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
+++.+++++|++ ...+++||||+++.||+++|.|||||||||++++|..++.|++|+|++||.|....+ ...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p-~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP-SFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh-HHHhhhcc
Confidence 678999999975 334899999999999999999999999999999999999999999999999987654 56788999
Q ss_pred EEccCccccch-hHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCCC
Q 000909 435 LVSQEHALFGT-SIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPV 513 (1230)
Q Consensus 435 ~v~Q~~~l~~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ 513 (1230)
+++-+..++.. |++|||.|... ...+...--++...+..+.| +++..+..+..++|-|+||||+|||||++||+
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~---L~~l~~~~~kari~~l~k~l--~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~ 153 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFAR---LNGLSRKEIKARIAELSKRL--QLLEYLDRRVGEFSTGMKQKVAIARALVHDPS 153 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHH---HhhhhhhHHHHHHHHHHHHh--ChHHHHHHHHhhhchhhHHHHHHHHHHhcCCC
Confidence 99988888865 99999996421 11111111123333445555 77777778888899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhh
Q 000909 514 ILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 514 illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 581 (1230)
+++||||||+||..+.+.+.+.+.+.+ .|+++|+.||.++.++. ||+++++.+|+++..|+.+++.+.
T Consensus 154 i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 154 ILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred eEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 999999999999999999999999876 49999999999999985 999999999999999999998764
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=372.04 Aligned_cols=204 Identities=28% Similarity=0.434 Sum_probs=178.5
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1070 (1230)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. .+|+++
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 4999999999963 35999999999999999999999999999999999999999999999998763 467899
Q ss_pred eEEcccccCCc-ccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccCC
Q 000909 1071 ALVSQEPVIYA-GNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNP 1149 (1230)
Q Consensus 1071 ~~VpQdp~Lf~-gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p 1149 (1230)
+|+||+|.+|. .|++||+.++.....++++.++++..++.++. .....+||||||||++|||||+++|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRA-----------NEWPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999987 69999998753222345666777777765543 3345689999999999999999999
Q ss_pred CEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHh
Q 000909 1150 TILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYA 1213 (1230)
Q Consensus 1150 ~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~ 1213 (1230)
++|||||||++||+.+...+.+.|++.. .++|+|+|||+++.+. .||+|++|++|++++.|+.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999998864 3799999999999985 47999999999999988754
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=367.18 Aligned_cols=214 Identities=28% Similarity=0.437 Sum_probs=182.1
Q ss_pred cEEEEEEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHH---H
Q 000909 354 EIEFEHVKFSYPSRP-DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKW---V 429 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~---~ 429 (1230)
-++++||+|+|+++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997422 146999999999999999999999999999999999999999999999999998877643 3
Q ss_pred h-hheEEEccCccccch-hHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHH
Q 000909 430 R-REMGLVSQEHALFGT-SIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIA 505 (1230)
Q Consensus 430 r-~~i~~v~Q~~~l~~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 505 (1230)
+ +.++|++|++.+|+. |++||+.++.. ....++.. ..+.+.++.+ |++....+...+||||||||++||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrl~la 157 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEIN-----SRALEMLAAV--GLEHRANHRPSELSGGERQRVAIA 157 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHH
Confidence 3 679999999998875 99999987421 11122211 1233455555 777777888899999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhccCEEEEEeCCeEEEecC
Q 000909 506 RAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGT 574 (1230)
Q Consensus 506 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~ 574 (1230)
||++.+|+++||||||++||+.+...+.+.|++.. +|+|+|++||+++.+..+|++++|++|++++.|+
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999998863 4899999999999998889999999999998775
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=368.43 Aligned_cols=208 Identities=35% Similarity=0.508 Sum_probs=176.7
Q ss_pred EEEEEEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHH----HH
Q 000909 355 IEFEHVKFSYPSRP-DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLK----WV 429 (1230)
Q Consensus 355 i~~~~v~~~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~----~~ 429 (1230)
|+++||+++|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999996421 14699999999999999999999999999999999999999999999999999877643 24
Q ss_pred hhheEEEccCccccch-hHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHH
Q 000909 430 RREMGLVSQEHALFGT-SIKDNIMFGKLDA--TMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIAR 506 (1230)
Q Consensus 430 r~~i~~v~Q~~~l~~~-ti~~Ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 506 (1230)
+++++|++|++.+|.. |++||+.++.... ...+. ...+.+.++.+ |++......+.+||||||||++|||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~ 153 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER-----RERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIAR 153 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHH-----HHHHHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHH
Confidence 5789999999999876 9999999863211 11111 12334556666 7777778888899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhccCEEEEEeCCeE
Q 000909 507 AIIKNPVILLLDEATSALDSESETLVQNALDQASL--GRTTLVVAHKLSTVRNADLIAVVDNGCL 569 (1230)
Q Consensus 507 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~~l~~G~i 569 (1230)
|++.+|+++||||||++||+.+.+.+.+.+++..+ ++|+|++||+++.+..||++++|++|++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999998653 8999999999999888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=382.09 Aligned_cols=217 Identities=25% Similarity=0.444 Sum_probs=184.0
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhhe
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREM 433 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i 433 (1230)
.|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|++|
T Consensus 7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 5999999999963 45999999999999999999999999999999999999999999999999997654 3578899
Q ss_pred EEEccCccccc-hhHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhcc
Q 000909 434 GLVSQEHALFG-TSIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIK 510 (1230)
Q Consensus 434 ~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 510 (1230)
|||||++.++. .|++||+.+... ..+..+..+ .+.+.++.+ |+.........+||||||||++|||||+.
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~aL~~ 155 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARA-----LVPPLLEFA--KLENKADAKVGELSGGMKRRLTLARALVN 155 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchHhcCchhhCCHHHHHHHHHHHHHhC
Confidence 99999999886 599999985321 112222221 122334443 55444555667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhh
Q 000909 511 NPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 511 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 581 (1230)
+|++|+|||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 156 ~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 156 DPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999999864 48999999999999976 999999999999999999998753
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=375.12 Aligned_cols=219 Identities=28% Similarity=0.416 Sum_probs=187.0
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CCCeEEECCeecCCCC-hH
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV-----EQGSVRVDGMDVRELD-VH 1064 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i~-~~ 1064 (1230)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999963 4699999999999999999999999999999999999986 6999999999998763 45
Q ss_pred HHhhcceEEcccccCCcccHHHHhccCCC---CCCHHHHH----HHHHHhchHHHHHhccccccccccCCCCCCChhHHH
Q 000909 1065 WYRKHTALVSQEPVIYAGNIRDNIVFGKL---DASENEVV----EAARAANAHEFISSLKDGYETECGERGVQLSGGQRQ 1137 (1230)
Q Consensus 1065 ~lR~~i~~VpQdp~Lf~gTIreNl~~g~~---~~sd~ei~----~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 1137 (1230)
.+|++++|+||+|.+|+.|+++|+.++.. ..++++.. +.++..++.+. +++.+...+.+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDA-------VKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCch-------hhhHhhCCcccCCHHHHH
Confidence 67899999999999999999999986521 12444432 33344444322 223345667789999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHh
Q 000909 1138 RIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLT 1216 (1230)
Q Consensus 1138 rlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl 1216 (1230)
|++||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988767899999999999865 7999999999999999999998
Q ss_pred hcc
Q 000909 1217 HMR 1219 (1230)
Q Consensus 1217 ~~~ 1219 (1230)
+.+
T Consensus 251 ~~~ 253 (276)
T PRK14271 251 SSP 253 (276)
T ss_pred hCc
Confidence 753
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=374.85 Aligned_cols=219 Identities=28% Similarity=0.463 Sum_probs=188.3
Q ss_pred CcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CCCeEEECCeecCC--CC
Q 000909 990 GKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV-----EQGSVRVDGMDVRE--LD 1062 (1230)
Q Consensus 990 g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i~ 1062 (1230)
+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||+++.+ .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 36999999999963 3599999999999999999999999999999999999985 48999999999864 45
Q ss_pred hHHHhhcceEEcccccCCcccHHHHhccCCC------CCC-HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhH
Q 000909 1063 VHWYRKHTALVSQEPVIYAGNIRDNIVFGKL------DAS-ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQ 1135 (1230)
Q Consensus 1063 ~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~------~~s-d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 1135 (1230)
...+|++++|+||+|.+|+.|++||+.++.. +.. ++.+.++++.+++.+++..+ ....+..|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK-------LNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH-------hcCCcccCCHHH
Confidence 5678899999999999999999999986421 111 23355677777776554322 234567899999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEe-----CcEEEEe
Q 000909 1136 RQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVA-----DGRVVER 1209 (1230)
Q Consensus 1136 rQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~-----~G~Ive~ 1209 (1230)
|||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||++++|+ +|++++.
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 99999999999999999999999999999999999999998778999999999999875 79999998 5999999
Q ss_pred cCHhHHhhc
Q 000909 1210 GTYAQLTHM 1218 (1230)
Q Consensus 1210 Gt~~eLl~~ 1218 (1230)
|+++++.+.
T Consensus 236 ~~~~~~~~~ 244 (259)
T PRK14260 236 GVTTQIFSN 244 (259)
T ss_pred CCHHHHhcC
Confidence 999999765
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-41 Score=378.24 Aligned_cols=218 Identities=25% Similarity=0.456 Sum_probs=182.5
Q ss_pred cEEEEEEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCC----ChH
Q 000909 991 KIEMRRVDFAYPSRP--DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVREL----DVH 1064 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i----~~~ 1064 (1230)
.|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996321 14699999999999999999999999999999999999999999999999998653 345
Q ss_pred HHhhcceEEcccc--cCCcccHHHHhccCCC--CCCHHH----HHHHHHHhchHHHHHhccccccccccCCCCCCChhHH
Q 000909 1065 WYRKHTALVSQEP--VIYAGNIRDNIVFGKL--DASENE----VVEAARAANAHEFISSLKDGYETECGERGVQLSGGQR 1136 (1230)
Q Consensus 1065 ~lR~~i~~VpQdp--~Lf~gTIreNl~~g~~--~~sd~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 1136 (1230)
..|+.++|+||+| .+|..|++||+.++.. ..+.++ +.++++..++.. ........+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSE----------DLISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hHhhCCcccCCHHHH
Confidence 6788999999998 5888899999986421 222222 334444444421 122345668999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhH
Q 000909 1137 QRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQ 1214 (1230)
Q Consensus 1137 QrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~e 1214 (1230)
||++|||||+.+|++|||||||++||+++...+.+.|++.. +|.|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999875 4789999999999985 589999999999999999999
Q ss_pred Hhhc
Q 000909 1215 LTHM 1218 (1230)
Q Consensus 1215 Ll~~ 1218 (1230)
+.+.
T Consensus 232 ~~~~ 235 (287)
T PRK13641 232 IFSD 235 (287)
T ss_pred HhcC
Confidence 8754
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=368.99 Aligned_cols=211 Identities=29% Similarity=0.461 Sum_probs=182.4
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcce
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1071 (1230)
|+++|++++|++ .++|+|+||+|.+||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+. .|+.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 578999999963 359999999999999999999999999999999999999999999999999987653 478899
Q ss_pred EEcccccCCcc-cHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHH
Q 000909 1072 LVSQEPVIYAG-NIRDNIVFGKL--DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARA 1144 (1230)
Q Consensus 1072 ~VpQdp~Lf~g-TIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARA 1144 (1230)
|+||+|.+|.+ |++||+.++.. ..+ ++++.++++..++.++.+ ....+||+||+||++||||
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrl~lara 144 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGD-----------RYPNQLSGGQRQRVALARA 144 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHHHHHHHHHH
Confidence 99999999975 99999986532 111 234455556665544433 3345799999999999999
Q ss_pred HccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHhhc
Q 000909 1145 IIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1145 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1218 (1230)
++++|+++||||||++||+++...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999999998654 7999999999999865 799999999999999999999864
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=374.09 Aligned_cols=218 Identities=28% Similarity=0.442 Sum_probs=188.3
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCCCeEEECCeecCC--CCh
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD-----VEQGSVRVDGMDVRE--LDV 1063 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~~ 1063 (1230)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|++. |++|+|.+||.++.. .+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4899999999963 359999999999999999999999999999999999986 479999999999853 456
Q ss_pred HHHhhcceEEcccccCCcccHHHHhccCCC--CC---CHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHH
Q 000909 1064 HWYRKHTALVSQEPVIYAGNIRDNIVFGKL--DA---SENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQR 1138 (1230)
Q Consensus 1064 ~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~--~~---sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 1138 (1230)
..+|++++|+||+|.+|+.|+++|+.++.. .. .++++.++++.+++.+++.. .....+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence 678899999999999998999999987532 11 13345566777777655532 2345567899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEe---------CcEEEE
Q 000909 1139 IAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVA---------DGRVVE 1208 (1230)
Q Consensus 1139 lalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~---------~G~Ive 1208 (1230)
++||||++++|+||||||||++||+++...+.+.|++..+++|+|++||+++.+.. ||+|++|+ +|+|++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999998777899999999998864 69999998 899999
Q ss_pred ecCHhHHhhc
Q 000909 1209 RGTYAQLTHM 1218 (1230)
Q Consensus 1209 ~Gt~~eLl~~ 1218 (1230)
.|+++|+.+.
T Consensus 240 ~~~~~~~~~~ 249 (264)
T PRK14243 240 FDRTEKIFNS 249 (264)
T ss_pred eCCHHHHHhC
Confidence 9999999865
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=390.31 Aligned_cols=214 Identities=28% Similarity=0.491 Sum_probs=185.5
Q ss_pred CcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhc
Q 000909 990 GKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKH 1069 (1230)
Q Consensus 990 g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~ 1069 (1230)
..|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+.+. .|++
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999963 359999999999999999999999999999999999999999999999999987764 4789
Q ss_pred ceEEcccccCCcc-cHHHHhccCCC--CCCH----HHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHH
Q 000909 1070 TALVSQEPVIYAG-NIRDNIVFGKL--DASE----NEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIA 1142 (1230)
Q Consensus 1070 i~~VpQdp~Lf~g-TIreNl~~g~~--~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalA 1142 (1230)
++||+|++.+|.. |++||+.|+.. ..+. +++.++++..++.++.+ ....+||||||||+|||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRVaLA 161 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAK-----------RKPHQLSGGQRQRVALA 161 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHH
Confidence 9999999999975 99999998632 2222 34556666666655433 33457999999999999
Q ss_pred HHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhHHhhcc
Q 000909 1143 RAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQLTHMR 1219 (1230)
Q Consensus 1143 RAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eLl~~~ 1219 (1230)
|||+++|++||||||||+||+.+...+.+.|++.. .+.|+|+|||+++.+. .||+|++|++|++++.|+|+++..+.
T Consensus 162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999998887764 3789999999999865 58999999999999999999998763
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-41 Score=375.48 Aligned_cols=219 Identities=34% Similarity=0.545 Sum_probs=187.9
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhhe
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREM 433 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i 433 (1230)
-++++||+++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 48999999999642 34699999999999999999999999999999999999999999999999999888877788899
Q ss_pred EEEccCc--cccchhHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhc
Q 000909 434 GLVSQEH--ALFGTSIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAII 509 (1230)
Q Consensus 434 ~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 509 (1230)
+|++|++ .+++.|++|||.++... .+.++..+ .+.+.+..+ |++..+.....+||||||||++|||||+
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LS~G~~qrv~laral~ 156 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVE-----RVDQALRQV--GMEDFLNREPHRLSGGQKQRVAIAGVLA 156 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHH-----HHHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 9999998 45677999999986321 12222211 122334444 6666667777899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhccCEEEEEeCCeEEEecChhHHHh
Q 000909 510 KNPVILLLDEATSALDSESETLVQNALDQASL--GRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 510 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
.+|++|||||||++||+.+...+.+.|+++.+ |+|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 157 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 157 LQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999988653 899999999999998899999999999999999998875
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=376.89 Aligned_cols=222 Identities=31% Similarity=0.458 Sum_probs=184.3
Q ss_pred EEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHH----hh
Q 000909 356 EFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWV----RR 431 (1230)
Q Consensus 356 ~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~----r~ 431 (1230)
.++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 45678888853 458999999999999999999999999999999999999999999999999987765443 46
Q ss_pred heEEEccCccccc-hhHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHh
Q 000909 432 EMGLVSQEHALFG-TSIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAI 508 (1230)
Q Consensus 432 ~i~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 508 (1230)
+++|++|++.+|. .|++||+.++... ....+.. ..+.+.++.+ |++..+.....+||||||||++||||+
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrv~lAral 175 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAERE-----ERAAEALELV--GLEGWEHKYPDELSGGMQQRVGLARAL 175 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 8999999999885 5999999875211 1111111 1223445555 666666777789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhhcCcH
Q 000909 509 IKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRIDGH 585 (1230)
Q Consensus 509 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 585 (1230)
+.+|++|||||||++||+.+.+.+.+.|.+.. .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+.....
T Consensus 176 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~ 255 (269)
T cd03294 176 AVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPAND 255 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCcCcH
Confidence 99999999999999999999999999998864 38999999999999865 9999999999999999999997654444
Q ss_pred HH
Q 000909 586 YA 587 (1230)
Q Consensus 586 ~~ 587 (1230)
|.
T Consensus 256 ~~ 257 (269)
T cd03294 256 YV 257 (269)
T ss_pred HH
Confidence 43
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=375.16 Aligned_cols=220 Identities=30% Similarity=0.431 Sum_probs=185.0
Q ss_pred EEEEEEEEECCCC------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHH-
Q 000909 355 IEFEHVKFSYPSR------PDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLK- 427 (1230)
Q Consensus 355 i~~~~v~~~y~~~------~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~- 427 (1230)
|+++||+|+|++. .++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 135699999999999999999999999999999999999999999999999999877654
Q ss_pred --HHhhheEEEccCcc--cc-chhHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCccc-chhcCCCCCCChhH
Q 000909 428 --WVRREMGLVSQEHA--LF-GTSIKDNIMFGKL---DATMDEVIAAATAANAHNFIRQLPEGYE-TKVGERGALLSGGQ 498 (1230)
Q Consensus 428 --~~r~~i~~v~Q~~~--l~-~~ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGq 498 (1230)
.+|+.|+|++|++. ++ ..|++||+.++.. ....++ ....+.+.++.+ |++ ...+..+.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~--gl~~~~~~~~~~~LSgGe 155 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESE-----QKARIAELLDMV--GLRSEDADKLPRQLSGGQ 155 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHH-----HHHHHHHHHHHc--CCChhhhhCChhhCCHHH
Confidence 36778999999983 44 3699999975421 111111 112234556666 775 45677888999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecCh
Q 000909 499 KQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTH 575 (1230)
Q Consensus 499 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~ 575 (1230)
|||++||||++.+|++|||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 156 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 235 (265)
T TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDV 235 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCH
Confidence 999999999999999999999999999999999999998864 38999999999999975 999999999999999999
Q ss_pred hHHHhh
Q 000909 576 NDLINR 581 (1230)
Q Consensus 576 ~~l~~~ 581 (1230)
+++...
T Consensus 236 ~~~~~~ 241 (265)
T TIGR02769 236 AQLLSF 241 (265)
T ss_pred HHHcCC
Confidence 999864
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-41 Score=375.89 Aligned_cols=227 Identities=25% Similarity=0.371 Sum_probs=189.0
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHH---HHh
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLK---WVR 430 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~---~~r 430 (1230)
-|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 5899999999963 4599999999999999999999999999999999999999999999999999876543 357
Q ss_pred hheEEEccCccccch-hHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHH
Q 000909 431 REMGLVSQEHALFGT-SIKDNIMFGKLD---ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIAR 506 (1230)
Q Consensus 431 ~~i~~v~Q~~~l~~~-ti~~Ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 506 (1230)
++++|++|++.+|+. |++||+.++... .+.++. ...+.+.++.+ |++........+||||||||++|||
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrv~lar 156 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLL-----HSTVMMKLEAV--GLRGAAKLMPSELSGGMARRAALAR 156 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHH-----HHHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 789999999999976 999999864211 111111 11223344555 6666667778899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhhcC
Q 000909 507 AIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRID 583 (1230)
Q Consensus 507 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 583 (1230)
|++.+|+++||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+...
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 236 (269)
T PRK11831 157 AIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPD 236 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcCCc
Confidence 9999999999999999999999999999998864 37999999999999876 99999999999999999999876433
Q ss_pred cHHHHHH
Q 000909 584 GHYAKMA 590 (1230)
Q Consensus 584 ~~~~~~~ 590 (1230)
..+..++
T Consensus 237 ~~~~~~~ 243 (269)
T PRK11831 237 PRVRQFL 243 (269)
T ss_pred HHHHHHH
Confidence 3334433
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-41 Score=371.95 Aligned_cols=217 Identities=29% Similarity=0.513 Sum_probs=188.6
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCCCeEEECCeecCC--CChH
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD-----VEQGSVRVDGMDVRE--LDVH 1064 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~~~ 1064 (1230)
|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|+|+.+ |++|+|.+||.+++. .+..
T Consensus 4 l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 4 IEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 789999999963 459999999999999999999999999999999999975 489999999999875 3466
Q ss_pred HHhhcceEEcccccCCcccHHHHhccCC--CCC-C----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHH
Q 000909 1065 WYRKHTALVSQEPVIYAGNIRDNIVFGK--LDA-S----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQ 1137 (1230)
Q Consensus 1065 ~lR~~i~~VpQdp~Lf~gTIreNl~~g~--~~~-s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 1137 (1230)
.+|++++|+||+|.+|.+|+++|+.++. .+. + ++++.++++.+++.+++..+ ....+.+|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq~q 153 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHHHHH
Confidence 7899999999999999999999998642 111 1 23456677777876665432 23456789999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHh
Q 000909 1138 RIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLT 1216 (1230)
Q Consensus 1138 rlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl 1216 (1230)
|+|||||++++|+||||||||++||+.+...+.+.|++..+++|+|++||+++.+.. +|+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998778999999999998876 5999999999999999999997
Q ss_pred hc
Q 000909 1217 HM 1218 (1230)
Q Consensus 1217 ~~ 1218 (1230)
..
T Consensus 234 ~~ 235 (250)
T PRK14266 234 IN 235 (250)
T ss_pred hC
Confidence 65
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=365.74 Aligned_cols=211 Identities=27% Similarity=0.477 Sum_probs=179.6
Q ss_pred EEEEEEEEECCCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhhe
Q 000909 355 IEFEHVKFSYPSRPD-SIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREM 433 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~-~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i 433 (1230)
|+++||+++|++... .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. ...++++++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999974311 159999999999999999999999999999999999999999999999999875 345678899
Q ss_pred EEEccCccccch-hHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhcc
Q 000909 434 GLVSQEHALFGT-SIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIK 510 (1230)
Q Consensus 434 ~~v~Q~~~l~~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 510 (1230)
+|++|++.+|+. |++||+.+... ....++.. ..+.+.++.+ |++......+.+||||||||++||||++.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~ 153 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELT-----ARLEELADRL--GMEELLDRRVGGFSTGMRQKVAIARALVH 153 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCHHHHhhhhhhcCHHHHHHHHHHHHHhc
Confidence 999999999985 99999986421 11122211 1233455555 77777788889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEec
Q 000909 511 NPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIG 573 (1230)
Q Consensus 511 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 573 (1230)
+|+++||||||++||+.+.+.+.+.+++.. +++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 154 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 154 DPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999998864 58999999999999865 9999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=369.96 Aligned_cols=211 Identities=32% Similarity=0.499 Sum_probs=183.9
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcce
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1071 (1230)
|+++|++++|+. .++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||+++.+.+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 478999999963 359999999999999999999999999999999999999999999999999987664 368899
Q ss_pred EEcccccCCcc-cHHHHhccCCC--C----CCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHH
Q 000909 1072 LVSQEPVIYAG-NIRDNIVFGKL--D----ASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARA 1144 (1230)
Q Consensus 1072 ~VpQdp~Lf~g-TIreNl~~g~~--~----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARA 1144 (1230)
|+||+|.+|.+ |+++|+.++.. . ..++++.++++..++.+++... ..+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRK-----------PSQLSGGQQQRVAIARA 144 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHH
Confidence 99999999975 99999975421 1 1234556666767776655443 35899999999999999
Q ss_pred HccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHhhc
Q 000909 1145 IIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1145 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1218 (1230)
++++|++|||||||++||+.+.+.+.+.+++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 9999999999999999999999999999998753 8999999999999865 799999999999999999999865
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=373.53 Aligned_cols=220 Identities=30% Similarity=0.426 Sum_probs=183.4
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecC--CCCH
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDA-----DDGIVRIDGVDIR--RLQL 426 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~i~--~~~~ 426 (1230)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.+||.++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999963 3599999999999999999999999999999999999987 4999999999987 4455
Q ss_pred HHHhhheEEEccCccccch-hHHHHHhcCCC--C--CCHHHHHHHHHHHhHHHHHHhC--CCcccchhcCCCCCCChhHH
Q 000909 427 KWVRREMGLVSQEHALFGT-SIKDNIMFGKL--D--ATMDEVIAAATAANAHNFIRQL--PEGYETKVGERGALLSGGQK 499 (1230)
Q Consensus 427 ~~~r~~i~~v~Q~~~l~~~-ti~~Ni~~~~~--~--~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGqk 499 (1230)
..+|++++|++|++.+|+. |++||+.++.. . ...++..+. +.+.++.+ ...+.......+.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 155 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDER-----VEWALKKAALWDEVKDRLNDYPSNLSGGQR 155 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHH-----HHHHHHHcCCccchhhhhccChhhCCHHHH
Confidence 6678899999999999976 99999987531 1 012221111 12223332 11122345677889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHH
Q 000909 500 QRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDL 578 (1230)
Q Consensus 500 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 578 (1230)
||++||||++++|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (253)
T PRK14267 156 QRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKV 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667999999999999865 999999999999999999998
Q ss_pred Hhh
Q 000909 579 INR 581 (1230)
Q Consensus 579 ~~~ 581 (1230)
.+.
T Consensus 236 ~~~ 238 (253)
T PRK14267 236 FEN 238 (253)
T ss_pred HhC
Confidence 764
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=363.85 Aligned_cols=210 Identities=30% Similarity=0.447 Sum_probs=187.0
Q ss_pred EEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCCh----HHHhh
Q 000909 993 EMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDV----HWYRK 1068 (1230)
Q Consensus 993 ~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~----~~lR~ 1068 (1230)
.+.|+.|+|+.+ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 567999999743 469999999999999999999999999999999999999999999999999876543 34567
Q ss_pred cceEEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccC
Q 000909 1069 HTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRN 1148 (1230)
Q Consensus 1069 ~i~~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~ 1148 (1230)
.++|+||+|.+|+.|++||+.++.+ ..+++..++++..++.+++..+|.|+++.++....+||||||||++||||++++
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 8999999999999999999987643 345667788899999999999999999999888999999999999999999999
Q ss_pred CCEEEeecccCCcCHHHHHHHHH--HHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCcE
Q 000909 1149 PTILLLDEATSALDVQSEQVVQE--ALDRIM-MGRTTIVVAHRLNTIKKLDSIALVADGR 1205 (1230)
Q Consensus 1149 p~ILlLDEaTSaLD~~te~~I~~--~l~~~~-~~~TvI~IaHrl~ti~~~D~I~vl~~G~ 1205 (1230)
|++|||||||++||+.+...+.+ .++... .+.|+|++||+++.+..||++++|++|+
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999888877 454443 3789999999999999999999999984
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=371.21 Aligned_cols=213 Identities=28% Similarity=0.451 Sum_probs=185.9
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcce
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1071 (1230)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+++...++++++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999963 35999999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEcccccC-CcccHHHHhccCCC-C-C----CHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHH
Q 000909 1072 LVSQEPVI-YAGNIRDNIVFGKL-D-A----SENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARA 1144 (1230)
Q Consensus 1072 ~VpQdp~L-f~gTIreNl~~g~~-~-~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARA 1144 (1230)
|+||++.+ +..|++||+.++.. . . .++++.++++..++.+.. ......||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLA-----------GRDYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHh-----------cCCcccCCHHHHHHHHHHHH
Confidence 99999987 67899999987532 1 1 123455666666665433 23456899999999999999
Q ss_pred Hc------cCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhHH
Q 000909 1145 II------RNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQL 1215 (1230)
Q Consensus 1145 ll------~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eL 1215 (1230)
|+ .+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999999875 4789999999999987 5899999999999999999998
Q ss_pred hhc
Q 000909 1216 THM 1218 (1230)
Q Consensus 1216 l~~ 1218 (1230)
.+.
T Consensus 229 ~~~ 231 (258)
T PRK13548 229 LTP 231 (258)
T ss_pred hCh
Confidence 764
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=371.49 Aligned_cols=218 Identities=28% Similarity=0.475 Sum_probs=187.4
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CCCeEEECCeecC-CCChH
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV-----EQGSVRVDGMDVR-ELDVH 1064 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~-~i~~~ 1064 (1230)
.++++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4899999999963 4599999999999999999999999999999999999986 5999999999985 45667
Q ss_pred HHhhcceEEcccccCCcccHHHHhccCCC--CCC-----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHH
Q 000909 1065 WYRKHTALVSQEPVIYAGNIRDNIVFGKL--DAS-----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQ 1137 (1230)
Q Consensus 1065 ~lR~~i~~VpQdp~Lf~gTIreNl~~g~~--~~s-----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 1137 (1230)
.+|+.++|+||+|.+|..|+++|+.++.. ... ++++.++++.+++.+.+. +........|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 88999999999999999999999986521 111 223445566666654332 2234456789999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHh
Q 000909 1138 RIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLT 1216 (1230)
Q Consensus 1138 rlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl 1216 (1230)
|++||||++.+|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998777999999999999876 7999999999999999999987
Q ss_pred hc
Q 000909 1217 HM 1218 (1230)
Q Consensus 1217 ~~ 1218 (1230)
.+
T Consensus 233 ~~ 234 (249)
T PRK14253 233 SN 234 (249)
T ss_pred cC
Confidence 54
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=370.89 Aligned_cols=218 Identities=29% Similarity=0.417 Sum_probs=184.7
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecCCCCHHH
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDA-----DDGIVRIDGVDIRRLQLKW 428 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~i~~~~~~~ 428 (1230)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999963 3599999999999999999999999999999999999984 6999999999998888778
Q ss_pred HhhheEEEccCcccc-chhHHHHHhcCCCC----CCHHHHHHHHHHHhHHHHHHhCCCcc----cchhcCCCCCCChhHH
Q 000909 429 VRREMGLVSQEHALF-GTSIKDNIMFGKLD----ATMDEVIAAATAANAHNFIRQLPEGY----ETKVGERGALLSGGQK 499 (1230)
Q Consensus 429 ~r~~i~~v~Q~~~l~-~~ti~~Ni~~~~~~----~~~~~~~~~~~~~~~~~~i~~l~~g~----~t~~~~~g~~LSgGqk 499 (1230)
+|+.|+|++|++.++ +.|++||+.++... ...++.. ..+.+.++.+ |+ +........+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQ-----ERVRWALEKA--QLWDEVKDRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHH-----HHHHHHHHHc--CCCcchhhhhcCCcccCCHHHH
Confidence 889999999999766 56999999875321 0111111 1122334443 33 2345677789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHH
Q 000909 500 QRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDL 578 (1230)
Q Consensus 500 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 578 (1230)
||++||||++++|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 9999999999999999999999999999999999999987678999999999999864 999999999999999999998
Q ss_pred Hhh
Q 000909 579 INR 581 (1230)
Q Consensus 579 ~~~ 581 (1230)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14247 233 FTN 235 (250)
T ss_pred HcC
Confidence 764
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=372.82 Aligned_cols=213 Identities=28% Similarity=0.456 Sum_probs=185.4
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcce
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1071 (1230)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 789999999963 46999999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEccccc-CCcccHHHHhccCCCC----------CCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHH
Q 000909 1072 LVSQEPV-IYAGNIRDNIVFGKLD----------ASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIA 1140 (1230)
Q Consensus 1072 ~VpQdp~-Lf~gTIreNl~~g~~~----------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 1140 (1230)
|+||+|. .+..|+++|+.++... ..++++.++++..++.+.. ......||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLA-----------DRDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCHHHHHHHH
Confidence 9999995 4567999999875310 0122455666666665432 2345679999999999
Q ss_pred HHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhHHhhc
Q 000909 1141 IARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1141 lARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eLl~~ 1218 (1230)
||||++.+|+++||||||++||+++...+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTP 227 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhCH
Confidence 9999999999999999999999999999999999875 3789999999999995 5899999999999999999998653
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=377.36 Aligned_cols=214 Identities=28% Similarity=0.484 Sum_probs=183.4
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCC--CChHHHhhc
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRE--LDVHWYRKH 1069 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~--i~~~~lR~~ 1069 (1230)
|+++||+++|+. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .+...+|++
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 789999999963 2359999999999999999999999999999999999999999999999999853 234567899
Q ss_pred ceEEcccc--cCCcccHHHHhccCCC--CCCH----HHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHH
Q 000909 1070 TALVSQEP--VIYAGNIRDNIVFGKL--DASE----NEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAI 1141 (1230)
Q Consensus 1070 i~~VpQdp--~Lf~gTIreNl~~g~~--~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlal 1141 (1230)
++|+||+| .+|..|++||+.++.. ..+. +++.++++..++.++. ......||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE-----------NKPPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhh-----------cCChhhCCHHHHHHHHH
Confidence 99999998 5788999999986531 1222 3355566666664432 22345799999999999
Q ss_pred HHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhHHhhc
Q 000909 1142 ARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1142 ARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eLl~~ 1218 (1230)
|||++.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999999875 4899999999999987 4899999999999999999998764
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=374.16 Aligned_cols=218 Identities=31% Similarity=0.494 Sum_probs=185.1
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CCCeEEECCeecCC--CCh
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV-----EQGSVRVDGMDVRE--LDV 1063 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i~~ 1063 (1230)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999963 3599999999999999999999999999999999999974 69999999999853 455
Q ss_pred HHHhhcceEEcccccCCc-ccHHHHhccCCC--C-CC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhH
Q 000909 1064 HWYRKHTALVSQEPVIYA-GNIRDNIVFGKL--D-AS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQ 1135 (1230)
Q Consensus 1064 ~~lR~~i~~VpQdp~Lf~-gTIreNl~~g~~--~-~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 1135 (1230)
..+|+.++|+||++.+|. .|+++|+.++.. . .+ ++.+.++++..++.+.+. ........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHH
Confidence 678899999999999987 599999975421 1 11 234455666666644332 22344567899999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEe------CcEEEE
Q 000909 1136 RQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIK-KLDSIALVA------DGRVVE 1208 (1230)
Q Consensus 1136 rQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~D~I~vl~------~G~Ive 1208 (1230)
|||++||||++++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+. .||+|++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 9999999999999999999999999999999999999998877799999999999986 579999997 899999
Q ss_pred ecCHhHHhhc
Q 000909 1209 RGTYAQLTHM 1218 (1230)
Q Consensus 1209 ~Gt~~eLl~~ 1218 (1230)
.|++++++..
T Consensus 234 ~~~~~~~~~~ 243 (258)
T PRK14241 234 IDDTEKIFSN 243 (258)
T ss_pred cCCHHHHHhC
Confidence 9999999764
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-41 Score=375.99 Aligned_cols=218 Identities=29% Similarity=0.495 Sum_probs=187.1
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCCCeEEECCeecCC--CCh
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD-----VEQGSVRVDGMDVRE--LDV 1063 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~~ 1063 (1230)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.++|.++.+ .+.
T Consensus 39 ~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 39 VIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred eEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 5899999999963 359999999999999999999999999999999999997 689999999999865 345
Q ss_pred HHHhhcceEEcccccCCcccHHHHhccCCC-----CCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHH
Q 000909 1064 HWYRKHTALVSQEPVIYAGNIRDNIVFGKL-----DASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQR 1138 (1230)
Q Consensus 1064 ~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~-----~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 1138 (1230)
..+|++++||||++.+|..|++||+.++.. ...++++.++++..++...+.. .......+||||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-------QLDSSGLDLSGGQQQR 188 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-------HHhCCcccCCHHHHHH
Confidence 678899999999999999999999986421 1123456677777766443321 2245567899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEE-EEeCcEEEEecCHhHHh
Q 000909 1139 IAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIA-LVADGRVVERGTYAQLT 1216 (1230)
Q Consensus 1139 lalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~-vl~~G~Ive~Gt~~eLl 1216 (1230)
++|||||+++|+||||||||++||+++.+.+.+.|++..+++|+|++||+++.+.. |||++ +|++|+|++.|+++++.
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998777899999999999876 79975 57999999999999997
Q ss_pred hc
Q 000909 1217 HM 1218 (1230)
Q Consensus 1217 ~~ 1218 (1230)
++
T Consensus 269 ~~ 270 (285)
T PRK14254 269 EN 270 (285)
T ss_pred hC
Confidence 65
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=373.12 Aligned_cols=214 Identities=24% Similarity=0.408 Sum_probs=187.4
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1070 (1230)
.|+++||+++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+++++
T Consensus 7 ~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 7 RLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred EEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 5999999999963 3599999999999999999999999999999999999999999999999999988888888999
Q ss_pred eEEcccccCCc-ccHHHHhccCC-CC---------CCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHH
Q 000909 1071 ALVSQEPVIYA-GNIRDNIVFGK-LD---------ASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRI 1139 (1230)
Q Consensus 1071 ~~VpQdp~Lf~-gTIreNl~~g~-~~---------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 1139 (1230)
+|+||++.+|. .|+++|+.++. +. ..++++.++++..++.++. ......||||||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLA-----------DQSVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHh-----------cCCcccCChHHHHHH
Confidence 99999998875 69999998652 11 1123456667776665543 234568999999999
Q ss_pred HHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHh
Q 000909 1140 AIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLT 1216 (1230)
Q Consensus 1140 alARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl 1216 (1230)
+||||++++|++|||||||++||+++...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998753 7899999999998865 7999999999999999999987
Q ss_pred hc
Q 000909 1217 HM 1218 (1230)
Q Consensus 1217 ~~ 1218 (1230)
..
T Consensus 233 ~~ 234 (265)
T PRK10253 233 TA 234 (265)
T ss_pred hH
Confidence 53
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-41 Score=372.18 Aligned_cols=219 Identities=33% Similarity=0.521 Sum_probs=187.2
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCC---------
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQ--------- 425 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~--------- 425 (1230)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 578999999963 35999999999999999999999999999999999999999999999999987543
Q ss_pred ----HHHHhhheEEEccCccccc-hhHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChh
Q 000909 426 ----LKWVRREMGLVSQEHALFG-TSIKDNIMFGKL---DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGG 497 (1230)
Q Consensus 426 ----~~~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 497 (1230)
...+++.++|++|++.+|. .|++||+.++.. ....++.. ..+.+.++.+ |++....+.+.+||||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAE-----KRAMELLDMV--GLADKADHMPAQLSGG 150 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhHhhcChhhcCHH
Confidence 2456889999999999885 699999987521 11122111 2234556666 7777778888999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecC
Q 000909 498 QKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGT 574 (1230)
Q Consensus 498 qkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~ 574 (1230)
||||++||||++++|+++||||||++||+.++..+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK 230 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998864 38999999999999865 99999999999999999
Q ss_pred hhHHHhhcC
Q 000909 575 HNDLINRID 583 (1230)
Q Consensus 575 ~~~l~~~~~ 583 (1230)
++++.+...
T Consensus 231 ~~~~~~~~~ 239 (252)
T TIGR03005 231 PDEIFRQPK 239 (252)
T ss_pred HHHHhcCCC
Confidence 999876433
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=365.54 Aligned_cols=213 Identities=25% Similarity=0.427 Sum_probs=179.9
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheE
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
|+++|++++|++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 578999999963 3599999999999999999999999999999999999999999999999988653 356678899
Q ss_pred EEccCccccch-hHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccC
Q 000909 435 LVSQEHALFGT-SIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKN 511 (1230)
Q Consensus 435 ~v~Q~~~l~~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 511 (1230)
|++|++.+++. |++||+.++.. ....++.. ..+.+.++.+ |++........+||||||||++||||++.+
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~la~al~~~ 149 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERR-----ERIDELLDFV--GLLEAADRLVKTYSGGMRRRLEIARSLVHR 149 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCHHHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999998875 99999987421 11111111 1223445555 665556667789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHH
Q 000909 512 PVILLLDEATSALDSESETLVQNALDQAS-L-GRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDL 578 (1230)
Q Consensus 512 ~~illlDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 578 (1230)
|+++||||||++||+++.+.+.+.|.+.. + ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 150 PEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999999998764 3 7899999999999876 999999999999999987764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-41 Score=387.72 Aligned_cols=210 Identities=36% Similarity=0.530 Sum_probs=178.6
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHH----hhheEEEccCccccch-
Q 000909 371 IVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWV----RREMGLVSQEHALFGT- 445 (1230)
Q Consensus 371 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~----r~~i~~v~Q~~~l~~~- 445 (1230)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.+.+...+ +++++||+|++.+|+.
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999988776543 4589999999999964
Q ss_pred hHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCC
Q 000909 446 SIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSA 523 (1230)
Q Consensus 446 ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~ 523 (1230)
|++||+.++... .+.++.. ..+.+.++.+ |++........+||||||||++|||||+.+|++||||||||+
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~-----~~~~e~L~~~--gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~ 194 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERR-----EKALDALRQV--GLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSA 194 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 999999986321 1112111 1233445555 776667778889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhhcCcHHH
Q 000909 524 LDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRIDGHYA 587 (1230)
Q Consensus 524 lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 587 (1230)
||+.+++.+++.|.++. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++...+...|.
T Consensus 195 LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~v 261 (400)
T PRK10070 195 LDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYV 261 (400)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHHH
Confidence 99999999999998863 48999999999999865 999999999999999999999875444443
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=367.76 Aligned_cols=220 Identities=27% Similarity=0.415 Sum_probs=192.0
Q ss_pred CccccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHH
Q 000909 350 EVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWV 429 (1230)
Q Consensus 350 ~~~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~ 429 (1230)
...+.|+++|+++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 35 ~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g----------- 98 (282)
T cd03291 35 SDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG----------- 98 (282)
T ss_pred CCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-----------
Confidence 344679999999962 3499999999999999999999999999999999999999999999998
Q ss_pred hhheEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhc
Q 000909 430 RREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAII 509 (1230)
Q Consensus 430 r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 509 (1230)
.|+|++|++.+|+.|++||+.++... ...++.+.++..++.+.+..+|.++++.+++.+.+||||||||++||||++
T Consensus 99 --~i~yv~q~~~l~~~tv~enl~~~~~~-~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~ 175 (282)
T cd03291 99 --RISFSSQFSWIMPGTIKENIIFGVSY-DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVY 175 (282)
T ss_pred --EEEEEeCcccccccCHHHHhhccccc-CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 49999999999999999999986432 233445556666777888899999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhcCCCeEEEEecCchhhhccCEEEEEeCCeEEEecChhHHHhhcCcHHHH
Q 000909 510 KNPVILLLDEATSALDSESETLVQNAL-DQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAK 588 (1230)
Q Consensus 510 ~~~~illlDE~ts~lD~~~~~~i~~~l-~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 588 (1230)
.+|++|||||||++||+.+...+.+.+ +...+++|+|++||+++.+..||++++|++|++++.|+++++... ...|.+
T Consensus 176 ~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~~ 254 (282)
T cd03291 176 KDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL-RPDFSS 254 (282)
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-chHHHH
Confidence 999999999999999999999888754 555568999999999999988999999999999999999998763 344443
Q ss_pred H
Q 000909 589 M 589 (1230)
Q Consensus 589 ~ 589 (1230)
.
T Consensus 255 ~ 255 (282)
T cd03291 255 K 255 (282)
T ss_pred H
Confidence 3
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=365.88 Aligned_cols=198 Identities=33% Similarity=0.520 Sum_probs=169.6
Q ss_pred EEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcceE
Q 000909 993 EMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTAL 1072 (1230)
Q Consensus 993 ~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~ 1072 (1230)
+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. .+|++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999963 35999999999999999999999999999999999999999999999998874 47889999
Q ss_pred EcccccC---CcccHHHHhccCCCC----------CCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHH
Q 000909 1073 VSQEPVI---YAGNIRDNIVFGKLD----------ASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRI 1139 (1230)
Q Consensus 1073 VpQdp~L---f~gTIreNl~~g~~~----------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 1139 (1230)
+||+|.+ |+.|++||+.++... ..++++.++++..++.++.. ....+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-----------RQIGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHH
Confidence 9999976 668999999865321 11234666777777765543 23457999999999
Q ss_pred HHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCcEEEEec
Q 000909 1140 AIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERG 1210 (1230)
Q Consensus 1140 alARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~G 1210 (1230)
+|||||+++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++| +++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999999875 68899999999999875 7999999986 56654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=372.83 Aligned_cols=221 Identities=21% Similarity=0.389 Sum_probs=183.8
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHH-hhc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWY-RKH 1069 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~l-R~~ 1069 (1230)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999988876554 456
Q ss_pred ceEEcccccCCcc-cHHHHhccCCCCCC--------------HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChh
Q 000909 1070 TALVSQEPVIYAG-NIRDNIVFGKLDAS--------------ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGG 1134 (1230)
Q Consensus 1070 i~~VpQdp~Lf~g-TIreNl~~g~~~~s--------------d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG 1134 (1230)
++|+||+|.+|.+ |+++|+.++..... +.+..+. ...+.++++.+ |++........+||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~--gl~~~~~~~~~~LS~G 157 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEA--LDRAATWLERV--GLLEHANRQAGNLAYG 157 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHH--HHHHHHHHHhC--ChhhhhhCChhhCCHH
Confidence 9999999999986 99999987531100 0000000 01122334433 4544555667789999
Q ss_pred HHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCcEEEEecC
Q 000909 1135 QRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKK-LDSIALVADGRVVERGT 1211 (1230)
Q Consensus 1135 QrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt 1211 (1230)
||||++||||++.+|++|||||||++||+.+.+.+.+.|.+..+ ++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 158 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~ 237 (255)
T PRK11300 158 QQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGT 237 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999999999998743 7899999999999865 89999999999999999
Q ss_pred HhHHhhc
Q 000909 1212 YAQLTHM 1218 (1230)
Q Consensus 1212 ~~eLl~~ 1218 (1230)
++++.+.
T Consensus 238 ~~~~~~~ 244 (255)
T PRK11300 238 PEEIRNN 244 (255)
T ss_pred HHHHhhC
Confidence 9998754
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=365.81 Aligned_cols=211 Identities=30% Similarity=0.481 Sum_probs=184.2
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcce
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1071 (1230)
|+++||+++|+. . ..|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. .+++++
T Consensus 2 l~~~~l~~~~~~---~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVS 74 (232)
T ss_pred eEEEEEEEEECC---c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEE
Confidence 789999999963 2 249999999999999999999999999999999999999999999999987654 367899
Q ss_pred EEcccccCCcc-cHHHHhccCC-CC-----CCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHH
Q 000909 1072 LVSQEPVIYAG-NIRDNIVFGK-LD-----ASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARA 1144 (1230)
Q Consensus 1072 ~VpQdp~Lf~g-TIreNl~~g~-~~-----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARA 1144 (1230)
|+||+|.+|.+ |++||+.++. +. ..++++.++++..++.+++.+.| ..||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999985 9999998642 11 12445777888888877665543 3799999999999999
Q ss_pred HccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHhhccc
Q 000909 1145 IIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTHMRG 1220 (1230)
Q Consensus 1145 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~~g 1220 (1230)
++++|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.....
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~~ 222 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGKA 222 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhChh
Confidence 9999999999999999999999999999998753 7899999999999875 79999999999999999999986543
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=381.13 Aligned_cols=213 Identities=25% Similarity=0.436 Sum_probs=180.7
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1070 (1230)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...+|+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999963 3599999999999999999999999999999999999999999999999998764 35678999
Q ss_pred eEEcccccCCc-ccHHHHhccC-C-CCCCHHHH----HHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHH
Q 000909 1071 ALVSQEPVIYA-GNIRDNIVFG-K-LDASENEV----VEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIAR 1143 (1230)
Q Consensus 1071 ~~VpQdp~Lf~-gTIreNl~~g-~-~~~sd~ei----~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalAR 1143 (1230)
+|+||++.+|. .|++||+.+. . ...+.++. .++++..++.+ .+++. ...||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-------~~~~~----~~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-------KADVR----VALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-------HhcCc----hhhCCHHHHHHHHHHH
Confidence 99999999885 6999999742 1 12233332 23333343322 23333 4579999999999999
Q ss_pred HHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHhhc
Q 000909 1144 AIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1144 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1218 (1230)
||+++|++|||||||++||+.+...+.+.|++.. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999999999874 48899999999999865 899999999999999999999764
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=368.56 Aligned_cols=217 Identities=32% Similarity=0.544 Sum_probs=187.1
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCC--CHHHHhhh
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRL--QLKWVRRE 432 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~--~~~~~r~~ 432 (1230)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +..+++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999963 3599999999999999999999999999999999999999999999999998764 34567889
Q ss_pred eEEEccCccccc-hhHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHh
Q 000909 433 MGLVSQEHALFG-TSIKDNIMFGKL---DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAI 508 (1230)
Q Consensus 433 i~~v~Q~~~l~~-~ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 508 (1230)
++|++|++.++. .|++||+.++.. ..+.++.. ..+.+.++.+ |++.........||||||||++||||+
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAE-----KQARELLAKV--GLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHH-----HHHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 999999998886 599999987531 11222211 1234556666 777777888899999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhh
Q 000909 509 IKNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 509 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 581 (1230)
+.+|+++||||||++||+++...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999998764 48999999999999965 999999999999999999988653
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=368.79 Aligned_cols=217 Identities=34% Similarity=0.534 Sum_probs=185.7
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCC--------H
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQ--------L 426 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~--------~ 426 (1230)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ .
T Consensus 4 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 889999999963 35999999999999999999999999999999999999999999999999986542 3
Q ss_pred HHHhhheEEEccCccccc-hhHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHH
Q 000909 427 KWVRREMGLVSQEHALFG-TSIKDNIMFGKL---DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRI 502 (1230)
Q Consensus 427 ~~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri 502 (1230)
..+++.++||+|++.+|+ .|++||+.++.. ....++.. ..+.+.++.+ |++......+.+||||||||+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv 153 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEAT-----ARARELLAKV--GLAGKETSYPRRLSGGQQQRV 153 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCcchhhCChhhCChHHHHHH
Confidence 456789999999999886 599999986421 11111111 1233455655 776667778899999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 503 AIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 503 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
+||||++.+|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 233 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998764 48999999999999866 99999999999999999999875
Q ss_pred h
Q 000909 581 R 581 (1230)
Q Consensus 581 ~ 581 (1230)
.
T Consensus 234 ~ 234 (250)
T PRK11264 234 D 234 (250)
T ss_pred C
Confidence 4
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=372.38 Aligned_cols=217 Identities=29% Similarity=0.505 Sum_probs=186.8
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCC-HHHHhhhe
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQ-LKWVRREM 433 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~-~~~~r~~i 433 (1230)
++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 689999999963 245999999999999999999999999999999999999999999999999998765 35678899
Q ss_pred EEEccCcc--ccchhHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhc
Q 000909 434 GLVSQEHA--LFGTSIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAII 509 (1230)
Q Consensus 434 ~~v~Q~~~--l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 509 (1230)
+|++|+|. +++.|++|||.++... .+.++..+ .+.+.++.+ |++......+..||||||||++||||++
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~laral~ 152 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRK-----RVDRALAEI--GLEKYRHRSPKTLSGGQGQCVALAGILT 152 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHHC--CCHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence 99999985 5677999999886321 12222221 123345555 7777777888999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhccCEEEEEeCCeEEEecChhHHHh
Q 000909 510 KNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 510 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
.+|+++||||||++||+.+...+.+.++++. +|+|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999998764 5899999999999998899999999999999999998865
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=349.97 Aligned_cols=172 Identities=42% Similarity=0.720 Sum_probs=162.5
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcce
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1071 (1230)
|+++|++++|++. +.++++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 5789999999742 246999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EEcccccCCcccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 000909 1072 LVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTI 1151 (1230)
Q Consensus 1072 ~VpQdp~Lf~gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p~I 1151 (1230)
|++|+|.+|++|++||+ ||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999997 999999999999999999999
Q ss_pred EEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCcEE
Q 000909 1152 LLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKKLDSIALVADGRV 1206 (1230)
Q Consensus 1152 LlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D~I~vl~~G~I 1206 (1230)
|||||||++||+.+.+.+.+.+++.. +++|+|++||+++.+..||+|++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999999875 48899999999999988999999999975
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=385.50 Aligned_cols=212 Identities=26% Similarity=0.410 Sum_probs=178.2
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCe----ecCCCCHHHH---h-hheEEEccCcc
Q 000909 370 SIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGV----DIRRLQLKWV---R-REMGLVSQEHA 441 (1230)
Q Consensus 370 ~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~----~i~~~~~~~~---r-~~i~~v~Q~~~ 441 (1230)
..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||. ++...+...+ | ++|+||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 35899999999999999999999999999999999999999999999996 5666655443 3 58999999999
Q ss_pred ccc-hhHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000909 442 LFG-TSIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLD 518 (1230)
Q Consensus 442 l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlD 518 (1230)
+|+ .|++||+.++... .+.++. ...+.+.++.+ |++........+||||||||++|||||+.+|+|||||
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~-----~~~a~e~le~v--gL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlD 189 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAER-----RKRVDEQLELV--GLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMD 189 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 997 6999999987421 112211 12233445555 6766667778899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhhcCcHHHH
Q 000909 519 EATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRIDGHYAK 588 (1230)
Q Consensus 519 E~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 588 (1230)
||||+||+.+.+.+++.+.++. .++|+|+|||+++.+.. ||+|++|++|++++.|++++++.++...|.+
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~ 262 (382)
T TIGR03415 190 EPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVA 262 (382)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHH
Confidence 9999999999999999998864 38999999999999854 9999999999999999999998754444543
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=367.40 Aligned_cols=218 Identities=26% Similarity=0.409 Sum_probs=182.9
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHH-Hhhh
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKW-VRRE 432 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~-~r~~ 432 (1230)
-|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +++.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999963 45999999999999999999999999999999999999999999999999998877643 6778
Q ss_pred eEEEccCccccch-hHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccC
Q 000909 433 MGLVSQEHALFGT-SIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKN 511 (1230)
Q Consensus 433 i~~v~Q~~~l~~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 511 (1230)
++|++|++.+|+. |++||+.++......++..+. +.+.++.++ +++........+||||||||++||||++.+
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQER-----IKWVYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHH-----HHHHHHHHH-HHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999975 999999986432222222211 122233332 122334456788999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 512 PVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 512 ~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
|+|+||||||++||+.+.+.+.+.++++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999998764 58999999999998755 99999999999999999999864
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=371.23 Aligned_cols=225 Identities=29% Similarity=0.434 Sum_probs=185.6
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecCCC--CH
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDA-----DDGIVRIDGVDIRRL--QL 426 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~i~~~--~~ 426 (1230)
.|+++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5999999999963 3599999999999999999999999999999999999985 799999999998653 23
Q ss_pred HHHhhheEEEccCccccchhHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhC--CCcccchhcCCCCCCChhHHHHH
Q 000909 427 KWVRREMGLVSQEHALFGTSIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQL--PEGYETKVGERGALLSGGQKQRI 502 (1230)
Q Consensus 427 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGqkqri 502 (1230)
..+++.++|++|++.+|+.|++||+.++.. ..+.++..+ .+.+.++.+ .+...........+||||||||+
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv 163 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDG-----VVENALRSAALWDETSDRLKSPALSLSGGQQQRL 163 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHH
Confidence 456788999999999999999999987531 112222111 122233333 11113445677789999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhh
Q 000909 503 AIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 503 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 581 (1230)
+|||||+.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 164 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 243 (258)
T PRK14268 164 CIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHN 243 (258)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999987668999999999999865 999999999999999999998764
Q ss_pred cCcHH
Q 000909 582 IDGHY 586 (1230)
Q Consensus 582 ~~~~~ 586 (1230)
+...|
T Consensus 244 ~~~~~ 248 (258)
T PRK14268 244 PREKS 248 (258)
T ss_pred CCCHH
Confidence 33333
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-41 Score=366.11 Aligned_cols=208 Identities=27% Similarity=0.394 Sum_probs=177.9
Q ss_pred cEEEEEEEEECCCCCC-cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHH---H
Q 000909 991 KIEMRRVDFAYPSRPD-ALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW---Y 1066 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~-~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---l 1066 (1230)
.|+++||+++|++... .++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+.+... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999964211 35999999999999999999999999999999999999999999999999998887653 3
Q ss_pred -hhcceEEcccccCCcc-cHHHHhccCC--CCC----CHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHH
Q 000909 1067 -RKHTALVSQEPVIYAG-NIRDNIVFGK--LDA----SENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQR 1138 (1230)
Q Consensus 1067 -R~~i~~VpQdp~Lf~g-TIreNl~~g~--~~~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 1138 (1230)
+++++|+||+|.+|.+ |++||+.++. ... ..+++.++++..++.++.... ...||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHL-----------PAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHH
Confidence 3689999999999885 9999997531 111 133556667777776554432 34799999999
Q ss_pred HHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCcEEEEe
Q 000909 1139 IAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKKLDSIALVADGRVVER 1209 (1230)
Q Consensus 1139 lalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~ 1209 (1230)
++|||||+++|++|||||||++||+++...+.+.|++.. .++|+|+|||+++.+..||++++|++|+++|.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999999874 27899999999999988999999999999874
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=373.41 Aligned_cols=221 Identities=30% Similarity=0.451 Sum_probs=190.0
Q ss_pred ccCcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CCCeEEECCeecC---
Q 000909 988 ISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV-----EQGSVRVDGMDVR--- 1059 (1230)
Q Consensus 988 ~~g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~--- 1059 (1230)
..+.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 13 ~~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 13 TQQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred CCceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 3567999999999963 3599999999999999999999999999999999999875 7999999998874
Q ss_pred -CCChHHHhhcceEEcccccCCcccHHHHhccCCC--C-----CCHHHHHHHHHHhchHHHHHhccccccccccCCCCCC
Q 000909 1060 -ELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKL--D-----ASENEVVEAARAANAHEFISSLKDGYETECGERGVQL 1131 (1230)
Q Consensus 1060 -~i~~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~--~-----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~L 1131 (1230)
......+|++++|+||+|.+|.+|++||+.++.. . ..++++.++++.+++.+.+. +..+.....|
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~L 162 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNL 162 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccC
Confidence 3345678899999999999999999999986421 1 12355667777776654332 2334556789
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCcEEEEec
Q 000909 1132 SGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRVVERG 1210 (1230)
Q Consensus 1132 SgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~G 1210 (1230)
|||||||++||||++++|++|||||||++||+++...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999988778999999999999964 8999999999999999
Q ss_pred CHhHHhhc
Q 000909 1211 TYAQLTHM 1218 (1230)
Q Consensus 1211 t~~eLl~~ 1218 (1230)
+++++...
T Consensus 243 ~~~~~~~~ 250 (265)
T PRK14252 243 ATDTIFIK 250 (265)
T ss_pred CHHHHHhC
Confidence 99999754
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=361.74 Aligned_cols=207 Identities=26% Similarity=0.478 Sum_probs=175.2
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheE
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
|+++|++|+|++ +++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..+++.++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 578999999963 35999999999999 99999999999999999999999999999999999988766 67788999
Q ss_pred EEccCccccch-hHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccC
Q 000909 435 LVSQEHALFGT-SIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKN 511 (1230)
Q Consensus 435 ~v~Q~~~l~~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 511 (1230)
|++|++.+|.. |++||+.+... ....++..+ .+.+.++.+ |++........+||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 148 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKA-----RVDEVLELV--NLGDRAKKKIGSLSGGMRRRVGIAQALVGD 148 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHH-----HHHHHHHHC--CCHHHHhCchhhCCHHHHHHHHHHHHHhcC
Confidence 99999999876 99999986421 111111111 122334444 554445566788999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEec
Q 000909 512 PVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIG 573 (1230)
Q Consensus 512 ~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 573 (1230)
|+++||||||++||+.+.+.+.+.+++..+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 149 PSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999987667999999999999865 9999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=358.44 Aligned_cols=200 Identities=36% Similarity=0.518 Sum_probs=179.1
Q ss_pred EEEEEEEEECCCCCC--CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhh
Q 000909 355 IEFEHVKFSYPSRPD--SIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRRE 432 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~--~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~ 432 (1230)
|+++||+++|++..+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 578999999974311 3699999999999999999999999999999999999999999999998 6
Q ss_pred eEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCC
Q 000909 433 MGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNP 512 (1230)
Q Consensus 433 i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 512 (1230)
|+|++|+|.+|+.|++||+.++.. ...++..++++..++.+++..+|.|+++.+++.+.+||||||||++||||++.+|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998643 3345566777777888899999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHH-HHHHh-cCCCeEEEEecCchhhhccCEEEEEeCCe
Q 000909 513 VILLLDEATSALDSESETLVQN-ALDQA-SLGRTTLVVAHKLSTVRNADLIAVVDNGC 568 (1230)
Q Consensus 513 ~illlDE~ts~lD~~~~~~i~~-~l~~~-~~~~t~i~itH~l~~~~~~d~i~~l~~G~ 568 (1230)
+++||||||++||+++.+.+.+ .+++. .+++|+|++||+++.+..||++++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999888877 45554 34799999999999998899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=365.63 Aligned_cols=210 Identities=25% Similarity=0.442 Sum_probs=181.0
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1070 (1230)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 4999999999963 3599999999999999999999999999999999999999999999999999988888889999
Q ss_pred eEEcccccCCcccHHHHhccCC---CC-CCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHc
Q 000909 1071 ALVSQEPVIYAGNIRDNIVFGK---LD-ASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAII 1146 (1230)
Q Consensus 1071 ~~VpQdp~Lf~gTIreNl~~g~---~~-~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll 1146 (1230)
+|+||+|.+|+.|++||+.++. .. ..++++.++++..++.+ +.......+||||||||++|||||+
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999997631 11 12233444444444421 2234556789999999999999999
Q ss_pred cCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEe-CcEEEEecCHh
Q 000909 1147 RNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKKLDSIALVA-DGRVVERGTYA 1213 (1230)
Q Consensus 1147 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~D~I~vl~-~G~Ive~Gt~~ 1213 (1230)
++|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+..||+|++|+ ++..+++|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999999999999874 3789999999999999899999995 67777889885
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-41 Score=364.17 Aligned_cols=204 Identities=26% Similarity=0.415 Sum_probs=174.2
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHH---Hhh
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW---YRK 1068 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---lR~ 1068 (1230)
|+++||+++|+. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+++... +|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999952 246999999999999999999999999999999999999999999999999998876543 688
Q ss_pred cceEEcccccC-CcccHHHHhccCC--CCCCHH----HHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHH
Q 000909 1069 HTALVSQEPVI-YAGNIRDNIVFGK--LDASEN----EVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAI 1141 (1230)
Q Consensus 1069 ~i~~VpQdp~L-f~gTIreNl~~g~--~~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlal 1141 (1230)
+++|+||+|.+ +..|++||+.++. ...+++ ++.++++..++.+... ....+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAK-----------NFPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCchhCCHHHHHHHHH
Confidence 99999999987 4679999998752 122332 3445566666554433 3346899999999999
Q ss_pred HHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCcEEEE
Q 000909 1142 ARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGRVVE 1208 (1230)
Q Consensus 1142 ARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive 1208 (1230)
|||++++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999999874 47899999999999976 79999999999864
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-41 Score=360.93 Aligned_cols=201 Identities=28% Similarity=0.507 Sum_probs=169.9
Q ss_pred EEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheEE
Q 000909 356 EFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGL 435 (1230)
Q Consensus 356 ~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~~ 435 (1230)
+++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 368999999641 459999999999999999999999999999999999999999999999998854 456778999
Q ss_pred EccCc--cccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCCC
Q 000909 436 VSQEH--ALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPV 513 (1230)
Q Consensus 436 v~Q~~--~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ 513 (1230)
++|++ .+++.|++||+.++.+....++ ..+.+.++.+ |++........+||||||||++||||++.+|+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~-------~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 146 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGN-------EQAETVLKDL--DLYALKERHPLSLSGGQKQRLAIAAALLSGKD 146 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccH-------HHHHHHHHHc--CCchhcCCCchhCCHHHHHHHHHHHHHHhCCC
Confidence 99997 4677899999998643221110 1122344444 55555666778999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEecCchhhhc-cCEEEEEeCCeEE
Q 000909 514 ILLLDEATSALDSESETLVQNALDQA-SLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLV 570 (1230)
Q Consensus 514 illlDE~ts~lD~~~~~~i~~~l~~~-~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~ 570 (1230)
++||||||++||+.+.+.+.+.+++. .+|+|+|++||+++.+.. ||+|++|++|+++
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 147 LLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999886 468999999999999875 9999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-41 Score=369.29 Aligned_cols=218 Identities=25% Similarity=0.420 Sum_probs=183.2
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHH-Hhhc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW-YRKH 1069 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~-lR~~ 1069 (1230)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+... .|++
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3889999999963 46999999999999999999999999999999999999999999999999998877644 5788
Q ss_pred ceEEcccccCCcc-cHHHHhccCCC---CCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHH
Q 000909 1070 TALVSQEPVIYAG-NIRDNIVFGKL---DASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAI 1145 (1230)
Q Consensus 1070 i~~VpQdp~Lf~g-TIreNl~~g~~---~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAl 1145 (1230)
++|+||++.+|.+ |++||+.++.. ..+.++.. ..+.+.++.+ |++.........||||||||++||||+
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE-----DRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHH-----HHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 9999999998875 99999986421 11222111 1223344443 344444556678999999999999999
Q ss_pred ccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhHHhhc
Q 000909 1146 IRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1146 l~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eLl~~ 1218 (1230)
+++|++|||||||++||+.+...+.+.+++.. +++|+|++||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 99999999999999999999999999998865 4899999999998775 5799999999999999999998754
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=371.14 Aligned_cols=219 Identities=33% Similarity=0.463 Sum_probs=184.3
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCeecCC--CC
Q 000909 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD-----ADDGIVRIDGVDIRR--LQ 425 (1230)
Q Consensus 353 ~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~i~~--~~ 425 (1230)
..|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 46999999999963 359999999999999999999999999999999999987 689999999999863 45
Q ss_pred HHHHhhheEEEccCccccchhHHHHHhcCCCCC--CH---HHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHH
Q 000909 426 LKWVRREMGLVSQEHALFGTSIKDNIMFGKLDA--TM---DEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQ 500 (1230)
Q Consensus 426 ~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~--~~---~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 500 (1230)
...+|+.++|++|++.+|..|++||+.++.... .. +++.++++..+ +..++++.......+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAA-------VWDECKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhC-------CcchhhhhhCCCcccCCHHHHH
Confidence 667888999999999999889999999764211 11 11112222111 1223445567778899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeC-----------Ce
Q 000909 501 RIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDN-----------GC 568 (1230)
Q Consensus 501 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~-----------G~ 568 (1230)
|++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999987668999999999999865 999999996 67
Q ss_pred EEEecChhHHHhh
Q 000909 569 LVEIGTHNDLINR 581 (1230)
Q Consensus 569 i~~~g~~~~l~~~ 581 (1230)
+++.|+++++.+.
T Consensus 242 ~~~~~~~~~~~~~ 254 (269)
T PRK14259 242 LVEFNETKKIFNS 254 (269)
T ss_pred EEEeCCHHHHHhC
Confidence 9999999999764
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=361.20 Aligned_cols=201 Identities=26% Similarity=0.468 Sum_probs=174.9
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcce
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1071 (1230)
|+++|++++|++. . .|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. .|++++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 5789999999632 2 39999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEcccccCCcc-cHHHHhccCCC-C-----CCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHH
Q 000909 1072 LVSQEPVIYAG-NIRDNIVFGKL-D-----ASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARA 1144 (1230)
Q Consensus 1072 ~VpQdp~Lf~g-TIreNl~~g~~-~-----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARA 1144 (1230)
|+||+|.+|.+ |++||+.++.. . ..++++.++++..++.+...+. ..+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRL-----------PGELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHHHHHHH
Confidence 99999999975 99999986532 1 1244577778888876665443 34799999999999999
Q ss_pred HccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCcEEEEec
Q 000909 1145 IIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERG 1210 (1230)
Q Consensus 1145 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~G 1210 (1230)
++++|++|||||||++||+++...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999875 38999999999999966 8999999999998865
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=367.54 Aligned_cols=221 Identities=23% Similarity=0.400 Sum_probs=188.5
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHH-Hhhhe
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKW-VRREM 433 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~-~r~~i 433 (1230)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999963 35999999999999999999999999999999999999999999999999998776654 35579
Q ss_pred EEEccCccccch-hHHHHHhcCCCCCC-H-HH---HHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHH
Q 000909 434 GLVSQEHALFGT-SIKDNIMFGKLDAT-M-DE---VIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARA 507 (1230)
Q Consensus 434 ~~v~Q~~~l~~~-ti~~Ni~~~~~~~~-~-~~---~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARa 507 (1230)
+|++|++.+|++ |++||+.++..... . .. .........+.+.++.+ |++........+||||||||++||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 999999999986 99999987532100 0 00 00011122345566666 77777788889999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 508 IIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 508 l~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
++.+|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 99999999999999999999999999999987768999999999999976 99999999999999999998864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=380.29 Aligned_cols=230 Identities=27% Similarity=0.381 Sum_probs=190.1
Q ss_pred cEEEEEEEEECCCCC-------CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCH
Q 000909 354 EIEFEHVKFSYPSRP-------DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQL 426 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~-------~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~ 426 (1230)
-|+++|++++|+.+. ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++...+.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999996321 2468999999999999999999999999999999999999999999999999988764
Q ss_pred H---HHhhheEEEccCcc--ccc-hhHHHHHhcCC---CCCCHHHHHHHHHHHhHHHHHHhCCCccc-chhcCCCCCCCh
Q 000909 427 K---WVRREMGLVSQEHA--LFG-TSIKDNIMFGK---LDATMDEVIAAATAANAHNFIRQLPEGYE-TKVGERGALLSG 496 (1230)
Q Consensus 427 ~---~~r~~i~~v~Q~~~--l~~-~ti~~Ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSg 496 (1230)
. .+|++|+||+|+|. +++ .|+.+|+..+. .....++. ...+.+.++.+ |++ ......+.+|||
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gL~~~~~~~~p~~LSg 157 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAER-----REKALAMMAKV--GLRPEHYDRYPHMFSG 157 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHH-----HHHHHHHHHHC--CCChHHhcCCCccCCH
Confidence 3 46788999999983 555 39999986421 11122211 12234555555 554 245677889999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEec
Q 000909 497 GQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIG 573 (1230)
Q Consensus 497 Gqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 573 (1230)
|||||++|||||+.+|++||+||||++||+.+...+.+.|.++. .|.|+|+|||+++.+.. ||+|++|++|+|+|.|
T Consensus 158 Gq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g 237 (327)
T PRK11308 158 GQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG 237 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999998864 38999999999999976 9999999999999999
Q ss_pred ChhHHHhhcCcHHHHHH
Q 000909 574 THNDLINRIDGHYAKMA 590 (1230)
Q Consensus 574 ~~~~l~~~~~~~~~~~~ 590 (1230)
+.+++++++...|.+..
T Consensus 238 ~~~~~~~~p~hpyt~~l 254 (327)
T PRK11308 238 TKEQIFNNPRHPYTQAL 254 (327)
T ss_pred CHHHHhcCCCCHHHHHH
Confidence 99999886555666543
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=372.85 Aligned_cols=227 Identities=23% Similarity=0.386 Sum_probs=188.7
Q ss_pred cEEEEEEEEECCCC------CCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChH
Q 000909 991 KIEMRRVDFAYPSR------PDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVH 1064 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~------~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~ 1064 (1230)
.|+++||+++|+.. .+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 38999999999631 124699999999999999999999999999999999999999999999999999766666
Q ss_pred HHhhcceEEccccc--CCcc-cHHHHhccC---CCCC----CHHHHHHHHHHhchH-HHHHhccccccccccCCCCCCCh
Q 000909 1065 WYRKHTALVSQEPV--IYAG-NIRDNIVFG---KLDA----SENEVVEAARAANAH-EFISSLKDGYETECGERGVQLSG 1133 (1230)
Q Consensus 1065 ~lR~~i~~VpQdp~--Lf~g-TIreNl~~g---~~~~----sd~ei~~al~~a~l~-~~i~~lp~gldt~vge~G~~LSg 1133 (1230)
..|++++|+||+|. ++.. |+.+|+.++ +... .++++.++++..++. +... ....+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHAS-----------YYPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHh-----------cCchhcCH
Confidence 66778999999985 4443 889998642 1111 124566777777773 3221 23357999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCcEEEEec
Q 000909 1134 GQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERG 1210 (1230)
Q Consensus 1134 GQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~G 1210 (1230)
|||||++||||++++|+||||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999875 37899999999999986 8999999999999999
Q ss_pred CHhHHhhcc--cccHHHhhh
Q 000909 1211 TYAQLTHMR--GAFFNLATL 1228 (1230)
Q Consensus 1211 t~~eLl~~~--g~y~~l~~~ 1228 (1230)
+++++.+.. ..+++++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~ 252 (267)
T PRK15112 233 STADVLASPLHELTKRLIAG 252 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHh
Confidence 999998763 445666653
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=374.14 Aligned_cols=219 Identities=31% Similarity=0.494 Sum_probs=185.4
Q ss_pred EEEEEEEEECCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCC----CHHH
Q 000909 355 IEFEHVKFSYPSRP--DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRL----QLKW 428 (1230)
Q Consensus 355 i~~~~v~~~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~----~~~~ 428 (1230)
|+++||+++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997421 13599999999999999999999999999999999999999999999999998764 3466
Q ss_pred HhhheEEEccCc--cccchhHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCccc-chhcCCCCCCChhHHHHHH
Q 000909 429 VRREMGLVSQEH--ALFGTSIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYE-TKVGERGALLSGGQKQRIA 503 (1230)
Q Consensus 429 ~r~~i~~v~Q~~--~l~~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri~ 503 (1230)
+|+.|+|++|++ .+|+.|++||+.++.. ..+.++..+ .+.+.++.+ |++ ........+||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEA-----LAREKLALV--GISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 788999999998 5788899999987531 122222222 123445554 665 3457778899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 504 IARAIIKNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 504 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
||||++.+|++|||||||++||+.+...+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999998764 48999999999999865 99999999999999999998865
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=372.48 Aligned_cols=217 Identities=30% Similarity=0.471 Sum_probs=186.2
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheE
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
++++|++++|+++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.++
T Consensus 4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 7899999999632 35999999999999999999999999999999999999999999999999998777777888999
Q ss_pred EEccCc--cccchhHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhcc
Q 000909 435 LVSQEH--ALFGTSIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIK 510 (1230)
Q Consensus 435 ~v~Q~~--~l~~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 510 (1230)
||+|++ .+|+.|++||+.++.. ..+.++..+ .+.+.++.+ |+.......+..||||||||++|||||+.
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrl~laraL~~ 154 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAH-----RVSSALHML--GLEELRDRVPHHLSGGEKKRVAIAGVIAM 154 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHC--CChhHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 999997 3677899999987532 122222211 123444444 56555677778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhh-ccCEEEEEeCCeEEEecChhHHHh
Q 000909 511 NPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVR-NADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 511 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
+|+++||||||++||+.+.+.+.+.++++. .|+|+|++||+++.+. .||+|++|++|++++.|+++++++
T Consensus 155 ~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 155 EPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 999999999999999999999999998764 3899999999999985 599999999999999999999876
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=355.36 Aligned_cols=213 Identities=31% Similarity=0.481 Sum_probs=184.0
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCe---ecCCCChHHHh
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGM---DVRELDVHWYR 1067 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~---di~~i~~~~lR 1067 (1230)
.|+++|++..|+. .++++|||++|+.||.+|+.||||||||||++++.|+..|++|+|.+||. |.++++.+ .
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~--~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR--D 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchh--h
Confidence 3788999999963 45899999999999999999999999999999999999999999999999 77774443 4
Q ss_pred hcceEEcccccCCc-ccHHHHhccCCC----CC----CHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHH
Q 000909 1068 KHTALVSQEPVIYA-GNIRDNIVFGKL----DA----SENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQR 1138 (1230)
Q Consensus 1068 ~~i~~VpQdp~Lf~-gTIreNl~~g~~----~~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 1138 (1230)
++||+|+|+..||. .||++||+||-. .+ ...++.+-++.+++..+-++ .+.+||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~r-----------yP~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADR-----------YPAQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhc-----------CchhcChHHHHH
Confidence 78999999999885 699999999952 12 23445556667766555433 346899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhHH
Q 000909 1139 IAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQL 1215 (1230)
Q Consensus 1139 lalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eL 1215 (1230)
+||||||...|++|+||||.++||.+-.+.+++-|++.. -|.|+++|||+.+.+. -||||+||++|+|...|+|+|.
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 999999999999999999999999999999999998865 3899999999998875 5799999999999999999999
Q ss_pred hhcc
Q 000909 1216 THMR 1219 (1230)
Q Consensus 1216 l~~~ 1219 (1230)
...+
T Consensus 226 ~~~P 229 (345)
T COG1118 226 YDHP 229 (345)
T ss_pred hcCC
Confidence 8764
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=383.24 Aligned_cols=226 Identities=21% Similarity=0.369 Sum_probs=184.8
Q ss_pred cEEEEEEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCC---CCeEEECCeecCCCChHHH
Q 000909 991 KIEMRRVDFAYPSRP-DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVE---QGSVRVDGMDVRELDVHWY 1066 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~idG~di~~i~~~~l 1066 (1230)
-++++|++++|+.+. ..++|+||||+|++||++||||+||||||||+++|+|+++|+ +|+|.+||.|+.+++.+.+
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 489999999996421 246999999999999999999999999999999999999996 9999999999999987766
Q ss_pred h----hcceEEcccc--cCCc-ccHHHHhccC---CCCCCHHH----HHHHHHHhchHHHHHhccccccccccCCCCCCC
Q 000909 1067 R----KHTALVSQEP--VIYA-GNIRDNIVFG---KLDASENE----VVEAARAANAHEFISSLKDGYETECGERGVQLS 1132 (1230)
Q Consensus 1067 R----~~i~~VpQdp--~Lf~-gTIreNl~~g---~~~~sd~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LS 1132 (1230)
| ++|+|||||| .++. .|+.+|+... ....+.++ +.+.++.+++ |++.+ .++..+.+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~~-~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEARK-RMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChHH-HhcCCcccCC
Confidence 4 4799999999 4554 4777776421 01123222 3334444433 33222 2456678899
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCcEEEEe
Q 000909 1133 GGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIK-KLDSIALVADGRVVER 1209 (1230)
Q Consensus 1133 gGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~ 1209 (1230)
||||||++|||||+.+|++||+|||||+||..+...|.+.|+++.+ +.|+|+|||+++.+. .||+|+||++|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998754 789999999999997 5899999999999999
Q ss_pred cCHhHHhhc-ccccHH
Q 000909 1210 GTYAQLTHM-RGAFFN 1224 (1230)
Q Consensus 1210 Gt~~eLl~~-~g~y~~ 1224 (1230)
|+++++.++ ...|.+
T Consensus 244 g~~~~i~~~p~~pyt~ 259 (330)
T PRK09473 244 GNARDVFYQPSHPYSI 259 (330)
T ss_pred CCHHHHHhCCCCHHHH
Confidence 999999876 334544
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=376.66 Aligned_cols=222 Identities=27% Similarity=0.456 Sum_probs=184.4
Q ss_pred cccEEEEEEEEECCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCC----C-
Q 000909 352 RGEIEFEHVKFSYPSRP--DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRR----L- 424 (1230)
Q Consensus 352 ~~~i~~~~v~~~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~----~- 424 (1230)
.+.|+++|++++|+++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 36799999999997432 1359999999999999999999999999999999999999999999999999852 2
Q ss_pred CHHHHhhheEEEccCc--cccchhHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCccc-chhcCCCCCCChhHH
Q 000909 425 QLKWVRREMGLVSQEH--ALFGTSIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYE-TKVGERGALLSGGQK 499 (1230)
Q Consensus 425 ~~~~~r~~i~~v~Q~~--~l~~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqk 499 (1230)
+...+|+.|+|++|++ .+|+.|++||+.++.. ....++..+. +.+.++.+ |+. ...+..+.+||||||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~ll~~~--~L~~~~~~~~~~~LS~Gq~ 156 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKK-----VPELLKLV--QLPEDYVKRSPFELSGGQK 156 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhHhcCChhhCCHHHH
Confidence 3456788999999998 4677899999987632 1222222221 12333333 452 345677889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChh
Q 000909 500 QRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHN 576 (1230)
Q Consensus 500 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~ 576 (1230)
||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .|+|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 157 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (289)
T PRK13645 157 RRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPF 236 (289)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999998764 38999999999998865 9999999999999999998
Q ss_pred HHHh
Q 000909 577 DLIN 580 (1230)
Q Consensus 577 ~l~~ 580 (1230)
++.+
T Consensus 237 ~~~~ 240 (289)
T PRK13645 237 EIFS 240 (289)
T ss_pred HHhc
Confidence 8865
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=375.89 Aligned_cols=218 Identities=29% Similarity=0.458 Sum_probs=185.1
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCCCeEEECCeecCCC--Ch
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD-----VEQGSVRVDGMDVREL--DV 1063 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~i--~~ 1063 (1230)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++... +.
T Consensus 39 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 39 HVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred EEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 5899999999963 359999999999999999999999999999999999865 4999999999998653 33
Q ss_pred HHHhhcceEEcccccCCcccHHHHhccCCC--CC-C----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHH
Q 000909 1064 HWYRKHTALVSQEPVIYAGNIRDNIVFGKL--DA-S----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQR 1136 (1230)
Q Consensus 1064 ~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~--~~-s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 1136 (1230)
..+|++++||||+|.+|..|++||+.++.. .. + ++++.++++..++.+.+. + ........||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~----~~~~~~~~LSgGq~ 188 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS---D----RLDKNALGLSGGQQ 188 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh---h----HhhCChhhCCHHHH
Confidence 467889999999999999999999987521 11 1 223455666665543221 1 22345678999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHH
Q 000909 1137 QRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQL 1215 (1230)
Q Consensus 1137 QrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1215 (1230)
||++|||||+.+|++|||||||++||+++.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777899999999999865 799999999999999999999
Q ss_pred hhc
Q 000909 1216 THM 1218 (1230)
Q Consensus 1216 l~~ 1218 (1230)
.++
T Consensus 269 ~~~ 271 (286)
T PRK14275 269 FTN 271 (286)
T ss_pred HhC
Confidence 876
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=370.52 Aligned_cols=219 Identities=31% Similarity=0.452 Sum_probs=190.1
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CCCeEEECCeecCCC--Ch
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV-----EQGSVRVDGMDVREL--DV 1063 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i--~~ 1063 (1230)
.+.+++++++|.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 3889999999953 4699999999999999999999999999999999999987 799999999998653 44
Q ss_pred HHHhhcceEEcccccCCcccHHHHhccCCC-----CCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHH
Q 000909 1064 HWYRKHTALVSQEPVIYAGNIRDNIVFGKL-----DASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQR 1138 (1230)
Q Consensus 1064 ~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~-----~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 1138 (1230)
..+|++++|+||+|.+|..|++||+.++.. ....+++.++++.+++.+.+.. ..++...+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHH
Confidence 567889999999999999999999987531 1123467778888887655432 2245667899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEe--------CcEEEEe
Q 000909 1139 IAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVA--------DGRVVER 1209 (1230)
Q Consensus 1139 lalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~--------~G~Ive~ 1209 (1230)
++||||++++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 99999999999999999999999999999999999998778999999999998865 79999996 8999999
Q ss_pred cCHhHHhhcc
Q 000909 1210 GTYAQLTHMR 1219 (1230)
Q Consensus 1210 Gt~~eLl~~~ 1219 (1230)
|+++++++..
T Consensus 238 g~~~~~~~~~ 247 (261)
T PRK14263 238 GPTAQIFQNP 247 (261)
T ss_pred CCHHHHHhCC
Confidence 9999998653
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=377.62 Aligned_cols=212 Identities=25% Similarity=0.424 Sum_probs=184.0
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcce
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1071 (1230)
++++|++++|+ +..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+ +...+|++++
T Consensus 3 l~~~~l~~~~~---~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYG---TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEEC---CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 78999999996 3459999999999999999999999999999999999999999999999999977 4467889999
Q ss_pred EEcccccCCcc-cHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHH
Q 000909 1072 LVSQEPVIYAG-NIRDNIVFGKL--DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARA 1144 (1230)
Q Consensus 1072 ~VpQdp~Lf~g-TIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARA 1144 (1230)
|+||+|.+|.+ |++||+.+... +.+ .+++.++++..++. .........||||||||++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR-----------PEQHKKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-----------hHhcCchhhCCHHHHHHHHHHHH
Confidence 99999999976 99999975321 122 22344444444443 33344566899999999999999
Q ss_pred HccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHhhc
Q 000909 1145 IIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1145 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1218 (1230)
|+++|++|||||||++||+.+.+.+++.+++..+++|+|++||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999998778999999999998876 899999999999999999999765
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=363.75 Aligned_cols=209 Identities=30% Similarity=0.512 Sum_probs=177.0
Q ss_pred EEEEEEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHH---Hh
Q 000909 355 IEFEHVKFSYPSRP-DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKW---VR 430 (1230)
Q Consensus 355 i~~~~v~~~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~---~r 430 (1230)
|+++||+++|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996421 246999999999999999999999999999999999999999999999999998776543 33
Q ss_pred -hheEEEccCccccc-hhHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHH
Q 000909 431 -REMGLVSQEHALFG-TSIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIAR 506 (1230)
Q Consensus 431 -~~i~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 506 (1230)
+.++|++|++.+|+ .|++||+.++.. .....+.. ..+.+.++.+ |++........+||||||||++|||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAK-----ERAYEMLEKV--GLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 67999999999986 599999987421 11111111 1223455655 7777777888899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhccCEEEEEeCCeEE
Q 000909 507 AIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRNADLIAVVDNGCLV 570 (1230)
Q Consensus 507 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~~l~~G~i~ 570 (1230)
|++.+|++|||||||++||+.++..+.+.|.++. .++|+|++||+++.+..+|+|++|++|+++
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999999999998764 379999999999999889999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=372.67 Aligned_cols=219 Identities=30% Similarity=0.548 Sum_probs=188.5
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhhe
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREM 433 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i 433 (1230)
.|+++|++++|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 58999999999632 34699999999999999999999999999999999999999999999999999877777888999
Q ss_pred EEEccCcc--ccchhHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhc
Q 000909 434 GLVSQEHA--LFGTSIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAII 509 (1230)
Q Consensus 434 ~~v~Q~~~--l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 509 (1230)
+|++|++. ++..|++||+.++... .+.++.. ..+.+.++.+ |++........+||||||||++|||||+
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMK-----DIIDDLAKKV--GMEDYLDKEPQNLSGGQKQRVAIASVLA 158 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHHc--CCHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999983 4567999999875321 1222221 1233445555 6766677888999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEecCchhhhccCEEEEEeCCeEEEecChhHHHh
Q 000909 510 KNPVILLLDEATSALDSESETLVQNALDQAS-L-GRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 510 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
.+|++|||||||++||+.+.+.+.+.+++.. + ++|+|++||+++.+..||+|++|++|++++.|+.+++.+
T Consensus 159 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 159 LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999998864 3 589999999999988899999999999999999988765
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=374.85 Aligned_cols=220 Identities=29% Similarity=0.490 Sum_probs=186.2
Q ss_pred cEEEEEEEEECCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCC----CHH
Q 000909 354 EIEFEHVKFSYPSRP--DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRL----QLK 427 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~----~~~ 427 (1230)
.|+++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996321 14699999999999999999999999999999999999999999999999998653 245
Q ss_pred HHhhheEEEccCc--cccchhHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCccc-chhcCCCCCCChhHHHHH
Q 000909 428 WVRREMGLVSQEH--ALFGTSIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYE-TKVGERGALLSGGQKQRI 502 (1230)
Q Consensus 428 ~~r~~i~~v~Q~~--~l~~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri 502 (1230)
..++.|+|++|+| .+|+.|++|||.++.. ....++..+ .+.+.++.+ |++ ........+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl 154 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKE-----KALKWLKKV--GLSEDLISKSPFELSGGQMRRV 154 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhHhhCCcccCCHHHHHHH
Confidence 6778999999998 5777899999987532 122222211 233455555 776 356778889999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 503 AIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 503 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
+|||||+.+|++|||||||++||+.+...+.+.|+++. +|.|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 155 ~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 155 AIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998864 58999999999999865 99999999999999999998865
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=367.39 Aligned_cols=217 Identities=28% Similarity=0.466 Sum_probs=187.3
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHH-Hhhh
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKW-VRRE 432 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~-~r~~ 432 (1230)
-|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3789999999963 45999999999999999999999999999999999999999999999999998777544 5778
Q ss_pred eEEEccCccccch-hHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHh
Q 000909 433 MGLVSQEHALFGT-SIKDNIMFGKL---DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAI 508 (1230)
Q Consensus 433 i~~v~Q~~~l~~~-ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 508 (1230)
++|++|++.+|.. |++||+.++.. ..+.++ ....+.+.++.+ |++........+||||||||++||||+
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQ-----REDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHH-----HHHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 9999999998875 99999987531 111111 122344566666 777777888899999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 509 IKNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 509 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
+.+|++|||||||++||+.+.+.+.+.+.+.. +|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999999998764 58999999999988765 99999999999999999998865
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=370.41 Aligned_cols=219 Identities=29% Similarity=0.497 Sum_probs=186.5
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCC--------
Q 000909 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRL-------- 424 (1230)
Q Consensus 353 ~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~-------- 424 (1230)
+.|+++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 56999999999963 4599999999999999999999999999999999999999999999999988642
Q ss_pred -----CHHHHhhheEEEccCccccch-hHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCcccchh-cCCCCCC
Q 000909 425 -----QLKWVRREMGLVSQEHALFGT-SIKDNIMFGKL---DATMDEVIAAATAANAHNFIRQLPEGYETKV-GERGALL 494 (1230)
Q Consensus 425 -----~~~~~r~~i~~v~Q~~~l~~~-ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~-~~~g~~L 494 (1230)
....+++.++|++|++.+|+. |++||+.++.. .....+. ...+.+.++.+ |+.... .....+|
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~~L 153 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEA-----RERAVKYLAKV--GIDERAQGKYPVHL 153 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHc--CCChhhhhCCcccC
Confidence 134667899999999999975 99999986421 1111111 12233455665 676654 6778899
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEe
Q 000909 495 SGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEI 572 (1230)
Q Consensus 495 SgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~ 572 (1230)
|||||||++|||||+++|+++||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 233 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 233 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999998864 48999999999999986 999999999999999
Q ss_pred cChhHHHhh
Q 000909 573 GTHNDLINR 581 (1230)
Q Consensus 573 g~~~~l~~~ 581 (1230)
|+++++...
T Consensus 234 ~~~~~~~~~ 242 (257)
T PRK10619 234 GAPEQLFGN 242 (257)
T ss_pred CCHHHhhhC
Confidence 999998754
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=380.47 Aligned_cols=229 Identities=25% Similarity=0.349 Sum_probs=185.9
Q ss_pred EEEEEEEEECCCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC----CCCceEEECCeecCCCCHHHH
Q 000909 355 IEFEHVKFSYPSRPD-SIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD----ADDGIVRIDGVDIRRLQLKWV 429 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~-~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~----~~~G~i~~~g~~i~~~~~~~~ 429 (1230)
++++|++++|+.... ..+|+||||+|++||++||||+||||||||+++|+|+++ |++|+|.++|+++.+++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 789999999974321 359999999999999999999999999999999999998 489999999999998887655
Q ss_pred h----hheEEEccCcc--ccc-hhHHHHHhcCC---CCCCHHHHHHHHHHHhHHHHHHhCCCccc---chhcCCCCCCCh
Q 000909 430 R----REMGLVSQEHA--LFG-TSIKDNIMFGK---LDATMDEVIAAATAANAHNFIRQLPEGYE---TKVGERGALLSG 496 (1230)
Q Consensus 430 r----~~i~~v~Q~~~--l~~-~ti~~Ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~---t~~~~~g~~LSg 496 (1230)
+ +.|+||+|+|. +.+ .|+.+|+.... .....++. ...+.+.++.+ |++ ...+..+.+|||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~-----~~~~~~~L~~~--gL~~~~~~l~~~p~~LSg 156 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTR-----RQRAIDLLNQV--GIPDPASRLDVYPHQLSG 156 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHC--CCCChHHHHhCCchhCCH
Confidence 4 36999999985 443 26666554211 01111111 12233445555 553 346788899999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEec
Q 000909 497 GQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIG 573 (1230)
Q Consensus 497 Gqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 573 (1230)
|||||++|||||+.+|++||+||||++||+.++..+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|+|+|.|
T Consensus 157 Gq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g 236 (326)
T PRK11022 157 GMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETG 236 (326)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999998864 48999999999999865 9999999999999999
Q ss_pred ChhHHHhhcCcHHHHHH
Q 000909 574 THNDLINRIDGHYAKMA 590 (1230)
Q Consensus 574 ~~~~l~~~~~~~~~~~~ 590 (1230)
+++++.+++...|.+..
T Consensus 237 ~~~~~~~~p~hpyt~~l 253 (326)
T PRK11022 237 KAHDIFRAPRHPYTQAL 253 (326)
T ss_pred CHHHHhhCCCChHHHHH
Confidence 99999886666676543
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=369.83 Aligned_cols=219 Identities=31% Similarity=0.501 Sum_probs=183.5
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCC-----CCeEEECCeecCC--CCh
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVE-----QGSVRVDGMDVRE--LDV 1063 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~-----~G~I~idG~di~~--i~~ 1063 (1230)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++.+ .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 3789999999963 46999999999999999999999999999999999999874 8999999999875 345
Q ss_pred HHHhhcceEEcccccCCcc-cHHHHhccCCC--CC-CHHHHHH----HHHHhchHHHHHhccccccccccCCCCCCChhH
Q 000909 1064 HWYRKHTALVSQEPVIYAG-NIRDNIVFGKL--DA-SENEVVE----AARAANAHEFISSLKDGYETECGERGVQLSGGQ 1135 (1230)
Q Consensus 1064 ~~lR~~i~~VpQdp~Lf~g-TIreNl~~g~~--~~-sd~ei~~----al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 1135 (1230)
..+|++++|+||+|.+|.. |++||+.++.. .. .+++..+ .++..++++.+ +..++ ....+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~----~~~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLK----TPATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhc----CCcccCCHHH
Confidence 5778999999999999985 99999975421 11 2333322 23334443322 22233 3456899999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhH
Q 000909 1136 RQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQ 1214 (1230)
Q Consensus 1136 rQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~e 1214 (1230)
|||++||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999999985 79999999999999999999
Q ss_pred Hhhcc
Q 000909 1215 LTHMR 1219 (1230)
Q Consensus 1215 Ll~~~ 1219 (1230)
+++.+
T Consensus 234 ~~~~~ 238 (252)
T PRK14272 234 LFTNP 238 (252)
T ss_pred HHhCc
Confidence 98763
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=367.85 Aligned_cols=221 Identities=31% Similarity=0.471 Sum_probs=183.7
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecCC--CC
Q 000909 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDA-----DDGIVRIDGVDIRR--LQ 425 (1230)
Q Consensus 353 ~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~i~~--~~ 425 (1230)
+.|+++||+++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46899999999973 3599999999999999999999999999999999999863 69999999999874 34
Q ss_pred HHHHhhheEEEccCccccchhHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHHhC--CCcccchhcCCCCCCChhHHH
Q 000909 426 LKWVRREMGLVSQEHALFGTSIKDNIMFGKLD--A-TMDEVIAAATAANAHNFIRQL--PEGYETKVGERGALLSGGQKQ 500 (1230)
Q Consensus 426 ~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~-~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGqkq 500 (1230)
...+|+.++|++|++.+|+.|++||+.++... . ..++..+ .+.+.++.+ .+++....+..+.+|||||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 153 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDE-----IVEKSLKGAALWDEVKDRLKKSALGLSGGQQQ 153 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHH-----HHHHHHHHcCCchhhHHHHhcCCCCCCHHHHH
Confidence 55678899999999999989999999875311 1 1111111 111222222 112334556778899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHH
Q 000909 501 RIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLI 579 (1230)
Q Consensus 501 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 579 (1230)
|++||||++.+|+++||||||++||+.++..+.+.+++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 154 RLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987678999999999998865 9999999999999999999987
Q ss_pred hh
Q 000909 580 NR 581 (1230)
Q Consensus 580 ~~ 581 (1230)
..
T Consensus 234 ~~ 235 (250)
T PRK14240 234 TN 235 (250)
T ss_pred hC
Confidence 64
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=369.37 Aligned_cols=220 Identities=28% Similarity=0.411 Sum_probs=184.0
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC--C---CCceEEECCeecCC--CCH
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD--A---DDGIVRIDGVDIRR--LQL 426 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~--~---~~G~i~~~g~~i~~--~~~ 426 (1230)
-|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 4899999999963 359999999999999999999999999999999999997 3 59999999999864 345
Q ss_pred HHHhhheEEEccCccccchhHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHHhC--CCcccchhcCCCCCCChhHHHH
Q 000909 427 KWVRREMGLVSQEHALFGTSIKDNIMFGKLD---ATMDEVIAAATAANAHNFIRQL--PEGYETKVGERGALLSGGQKQR 501 (1230)
Q Consensus 427 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGqkqr 501 (1230)
..+|+.++|++|++.+|+.|++||+.++... ...++..+ .+.+.++.+ .+.+.+.....+.+||||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qr 163 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQE-----IVEKSLKDVALWDEVKDRLHTQALSLSGGQQQR 163 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHH-----HHHHHHHHcCCchhhhhhhhCCcccCCHHHHHH
Confidence 5678899999999999989999999875321 11122111 112233333 1112344567888999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 502 IAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 502 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
++||||++++|+++||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 164 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 243 (259)
T PRK14274 164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFS 243 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhh
Confidence 99999999999999999999999999999999999988778999999999999865 99999999999999999999876
Q ss_pred h
Q 000909 581 R 581 (1230)
Q Consensus 581 ~ 581 (1230)
+
T Consensus 244 ~ 244 (259)
T PRK14274 244 N 244 (259)
T ss_pred C
Confidence 4
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=363.67 Aligned_cols=212 Identities=32% Similarity=0.493 Sum_probs=173.3
Q ss_pred EEEEEEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCCh---HHHh
Q 000909 992 IEMRRVDFAYPSRP-DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDV---HWYR 1067 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~---~~lR 1067 (1230)
|+++||+++|+++. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 1269999999999999999999999999999999999999999999999999988774 5778
Q ss_pred hcceEEcccc--cCC-cccHHHHhccCC----CCCCHHHHHHHHHHhchHHHHHhcccccc-ccccCCCCCCChhHHHHH
Q 000909 1068 KHTALVSQEP--VIY-AGNIRDNIVFGK----LDASENEVVEAARAANAHEFISSLKDGYE-TECGERGVQLSGGQRQRI 1139 (1230)
Q Consensus 1068 ~~i~~VpQdp--~Lf-~gTIreNl~~g~----~~~sd~ei~~al~~a~l~~~i~~lp~gld-t~vge~G~~LSgGQrQrl 1139 (1230)
++++|+||+| .++ ..|+++|+.++. +...+++...+. .+.++.+ |++ ........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 8999999999 344 479999997531 111111111110 1222222 232 233455678999999999
Q ss_pred HHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCcEEEEec
Q 000909 1140 AIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIK-KLDSIALVADGRVVERG 1210 (1230)
Q Consensus 1140 alARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~G 1210 (1230)
+||||++.+|++|||||||++||+++...+.+.|++..+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999998754 799999999999987 58999999999998865
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=371.19 Aligned_cols=219 Identities=27% Similarity=0.486 Sum_probs=188.2
Q ss_pred CcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCC-----CCeEEECCeecCC--CC
Q 000909 990 GKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVE-----QGSVRVDGMDVRE--LD 1062 (1230)
Q Consensus 990 g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~-----~G~I~idG~di~~--i~ 1062 (1230)
+.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.|++. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 46999999999963 35999999999999999999999999999999999999985 8999999999853 34
Q ss_pred hHHHhhcceEEcccccCCcccHHHHhccCC------CCCC-HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhH
Q 000909 1063 VHWYRKHTALVSQEPVIYAGNIRDNIVFGK------LDAS-ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQ 1135 (1230)
Q Consensus 1063 ~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~------~~~s-d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 1135 (1230)
...+|+.++|+||++.+|..|++||+.++. +... ++.+.++++..++.+++.. ..+..+..|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHH
Confidence 567889999999999999999999997642 1111 2345667777777555442 2345567899999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeC-----cEEE
Q 000909 1136 RQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKK-LDSIALVAD-----GRVV 1207 (1230)
Q Consensus 1136 rQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~vl~~-----G~Iv 1207 (1230)
|||++||||++++|++|||||||++||+++...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999999853 48999999999999865 699999999 9999
Q ss_pred EecCHhHHhhc
Q 000909 1208 ERGTYAQLTHM 1218 (1230)
Q Consensus 1208 e~Gt~~eLl~~ 1218 (1230)
+.|+++++.+.
T Consensus 236 ~~~~~~~~~~~ 246 (261)
T PRK14258 236 EFGLTKKIFNS 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 99999999865
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=366.10 Aligned_cols=214 Identities=27% Similarity=0.455 Sum_probs=180.6
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHH-Hhhhe
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKW-VRREM 433 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~-~r~~i 433 (1230)
|+++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 578999999973 35999999999999999999999999999999999999999999999999998877654 46789
Q ss_pred EEEccCccccch-hHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCC
Q 000909 434 GLVSQEHALFGT-SIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNP 512 (1230)
Q Consensus 434 ~~v~Q~~~l~~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 512 (1230)
+|++|++.+|+. |++||+.++.......+ .+ ...+.++.+ ++++........+||||||||++||||++++|
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~-~~-----~~~~~l~~~-~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRS-RK-----IPDEIYELF-PVLKEMLGRRGGDLSGGQQQQLAIARALVTRP 150 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcch-HH-----HHHHHHHHH-HhHHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999976 99999987632211110 00 011222222 12444566777899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHH
Q 000909 513 VILLLDEATSALDSESETLVQNALDQASL--GRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDL 578 (1230)
Q Consensus 513 ~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 578 (1230)
+++||||||++||+.+...+.+.|.+..+ ++|+|++||+++.+.. ||+|+++++|++++.|+++++
T Consensus 151 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 151 KLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999988643 7999999999999986 999999999999999999887
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-41 Score=363.84 Aligned_cols=209 Identities=32% Similarity=0.436 Sum_probs=176.3
Q ss_pred EEEEEEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhhe
Q 000909 355 IEFEHVKFSYPSRP-DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREM 433 (1230)
Q Consensus 355 i~~~~v~~~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i 433 (1230)
|+++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 47899999997411 1469999999999999999999999999999999999999999999999998863 35789
Q ss_pred EEEccCccccc-hhHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhcc
Q 000909 434 GLVSQEHALFG-TSIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIK 510 (1230)
Q Consensus 434 ~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 510 (1230)
+||+|++.+|+ .|++||+.++.. ....++. ...+.+.++.+ |++........+||||||||++||||++.
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEA-----RERAEELLELV--GLSGFENAYPHQLSGGMRQRVALARALAV 148 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 99999999987 599999987531 1111111 12234455665 67666777788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEe--CCeEEEecCh
Q 000909 511 NPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVD--NGCLVEIGTH 575 (1230)
Q Consensus 511 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~--~G~i~~~g~~ 575 (1230)
+|+++||||||++||+.+...+.+.|++.. .++|+|++||+++.+.. ||+|++|+ +|++++.++.
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999999998763 48999999999998765 99999999 7999998764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=365.13 Aligned_cols=210 Identities=29% Similarity=0.502 Sum_probs=183.4
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcce
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1071 (1230)
|+++|++++|++ ++|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+. .|++++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 578999999962 28999999999999999999999999999999999999999999999999987654 378999
Q ss_pred EEcccccCCc-ccHHHHhccCCC--CC----CHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHH
Q 000909 1072 LVSQEPVIYA-GNIRDNIVFGKL--DA----SENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARA 1144 (1230)
Q Consensus 1072 ~VpQdp~Lf~-gTIreNl~~g~~--~~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARA 1144 (1230)
++||++.+|. .|++||+.++.. .. .++++.++++..++.+++.+. ..+||||||||++||||
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~lara 143 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRK-----------PETLSGGEQQRVAIARA 143 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcC-----------cccCCHHHHHHHHHHHH
Confidence 9999999985 699999986422 11 233456677777776655433 35799999999999999
Q ss_pred HccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHhhc
Q 000909 1145 IIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1145 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1218 (1230)
++++|++|+|||||++||+.+.+.+.+.+++... ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 9999999999999999999999999999998653 8999999999999875 899999999999999999999875
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=372.60 Aligned_cols=220 Identities=30% Similarity=0.512 Sum_probs=188.9
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC---ceEEECCeecCCCCHHHH
Q 000909 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADD---GIVRIDGVDIRRLQLKWV 429 (1230)
Q Consensus 353 ~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~---G~i~~~g~~i~~~~~~~~ 429 (1230)
..|+++|++|+|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 358999999999642 2459999999999999999999999999999999999999998 899999999987777778
Q ss_pred hhheEEEccCcc--ccchhHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHH
Q 000909 430 RREMGLVSQEHA--LFGTSIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIA 505 (1230)
Q Consensus 430 r~~i~~v~Q~~~--l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 505 (1230)
++++||++|+|. +++.|++|||.++... .+.++..+ .+.+.++.+ |++........+||||||||++||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LS~G~~qrv~la 155 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIK-----IVRDVLADV--GMLDYIDSEPANLSGGQKQRVAIA 155 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHH-----HHHHHHHHC--CChhHhcCCcccCCHHHHHHHHHH
Confidence 889999999984 5678999999976322 22222211 223344555 666667778889999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhccCEEEEEeCCeEEEecChhHHHh
Q 000909 506 RAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 506 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
|||+.+|+++||||||++||+.+...+.+.|+++. .|+|+|++||+++.+..||++++|++|++++.|+++++..
T Consensus 156 ral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 156 GILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999998864 3899999999999998899999999999999999998865
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=383.95 Aligned_cols=207 Identities=27% Similarity=0.404 Sum_probs=176.7
Q ss_pred cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCe----ecCCCChHHHh----hcceEEccccc
Q 000909 1007 ALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGM----DVRELDVHWYR----KHTALVSQEPV 1078 (1230)
Q Consensus 1007 ~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~----di~~i~~~~lR----~~i~~VpQdp~ 1078 (1230)
..+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||. |+.+.+...+| ++++||||++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 35899999999999999999999999999999999999999999999996 67777665543 57999999999
Q ss_pred CCc-ccHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 000909 1079 IYA-GNIRDNIVFGKL--DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTI 1151 (1230)
Q Consensus 1079 Lf~-gTIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p~I 1151 (1230)
+|+ .|++||+.++.. ..+ .+.+.++++..++.++.+. ...+||||||||++|||||+++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~-----------~~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADK-----------KPGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 997 699999987631 122 2345666777776655433 3457999999999999999999999
Q ss_pred EEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhHHhhc-ccccHH
Q 000909 1152 LLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQLTHM-RGAFFN 1224 (1230)
Q Consensus 1152 LlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eLl~~-~g~y~~ 1224 (1230)
||||||||+||+.+.+.+++.|.+..+ ++|+|+|||+++.+. .||+|++|++|++++.|++++++.+ .+.|.+
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~ 262 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVA 262 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHH
Confidence 999999999999999999999998753 799999999999975 5899999999999999999999876 344443
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=379.99 Aligned_cols=213 Identities=26% Similarity=0.443 Sum_probs=181.3
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1070 (1230)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+.+.+ ...|+++
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 4999999999963 35999999999999999999999999999999999999999999999999997654 5678999
Q ss_pred eEEcccccCC-cccHHHHhccCCC--CCCHHHH----HHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHH
Q 000909 1071 ALVSQEPVIY-AGNIRDNIVFGKL--DASENEV----VEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIAR 1143 (1230)
Q Consensus 1071 ~~VpQdp~Lf-~gTIreNl~~g~~--~~sd~ei----~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalAR 1143 (1230)
+|+||++.+| ..|++||+.+... ..+.++. .++++..+ +++..++.+ .+||||||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~-------L~~~~~~~~----~~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR-------LESKADARV----SDLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-------CchhhCCCh----hhCCHHHHHHHHHHH
Confidence 9999999886 4699999975211 2222222 23333333 333344444 579999999999999
Q ss_pred HHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHhhc
Q 000909 1144 AIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1144 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1218 (1230)
||+.+|++|||||||++||+.+...+.+.|++.. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999999999875 48999999999999965 899999999999999999999764
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=367.80 Aligned_cols=218 Identities=30% Similarity=0.445 Sum_probs=182.7
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCeecCC--CCH
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD-----ADDGIVRIDGVDIRR--LQL 426 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~i~~--~~~ 426 (1230)
.|+++|++|+|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999963 359999999999999999999999999999999999997 479999999999864 344
Q ss_pred HHHhhheEEEccCccccchhHHHHHhcCCCC--CC-HHHHHHHHHHHhHHHHHHhCCCcc----cchhcCCCCCCChhHH
Q 000909 427 KWVRREMGLVSQEHALFGTSIKDNIMFGKLD--AT-MDEVIAAATAANAHNFIRQLPEGY----ETKVGERGALLSGGQK 499 (1230)
Q Consensus 427 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~~-~~~~~~~~~~~~~~~~i~~l~~g~----~t~~~~~g~~LSgGqk 499 (1230)
..+++.++|++|++.+|+.|++||+.++... .. .+...+ .+.+.++.+ |+ ....+..+.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQ-----RVEESLKQA--AIWKETKDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHH-----HHHHHHHHc--CCCcchHHHhccChhhCCHHHH
Confidence 5678899999999999999999999875321 11 111111 112223333 33 2335677789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHH
Q 000909 500 QRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDL 578 (1230)
Q Consensus 500 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 578 (1230)
||++||||++++|+++||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667999999999999866 999999999999999999998
Q ss_pred Hhh
Q 000909 579 INR 581 (1230)
Q Consensus 579 ~~~ 581 (1230)
...
T Consensus 234 ~~~ 236 (251)
T PRK14251 234 FIA 236 (251)
T ss_pred HhC
Confidence 764
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=369.35 Aligned_cols=220 Identities=26% Similarity=0.404 Sum_probs=182.4
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCeecCC--CCH
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD-----ADDGIVRIDGVDIRR--LQL 426 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~i~~--~~~ 426 (1230)
-|+++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 5899999999963 459999999999999999999999999999999999865 799999999999865 334
Q ss_pred HHHhhheEEEccCccccchhHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHHhC--CCcccchhcCCCCCCChhHHHH
Q 000909 427 KWVRREMGLVSQEHALFGTSIKDNIMFGKLD--A-TMDEVIAAATAANAHNFIRQL--PEGYETKVGERGALLSGGQKQR 501 (1230)
Q Consensus 427 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~-~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGqkqr 501 (1230)
..++++++|++|++.+|+.|++||+.++... . ......+ .+.+.+..+ ..++....+..+.+||||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 172 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDE-----IVEESLTKAALWDEVKDRLHSSALSLSGGQQQR 172 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHH-----HHHHHHHHcCCCcchHHHHhcCcccCCHHHHHH
Confidence 5678899999999999989999999875211 1 1111111 111222222 1112244567788999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 502 IAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 502 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
++|||||+.+|+++||||||++||+.+...+.+.++++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 173 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 252 (268)
T PRK14248 173 LCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFT 252 (268)
T ss_pred HHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999988667899999999998865 99999999999999999999876
Q ss_pred h
Q 000909 581 R 581 (1230)
Q Consensus 581 ~ 581 (1230)
+
T Consensus 253 ~ 253 (268)
T PRK14248 253 S 253 (268)
T ss_pred C
Confidence 4
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=412.04 Aligned_cols=221 Identities=24% Similarity=0.343 Sum_probs=152.2
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHh------ccc---cCCCCe-----------
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQ------RFY---DVEQGS----------- 1050 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~------rl~---~p~~G~----------- 1050 (1230)
.|+++|++. ..|+|+||+|++||.+||+|+||||||||+.-++ ++. .+..+.
T Consensus 614 ~L~v~~l~~--------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 685 (943)
T PRK00349 614 FLKLKGARE--------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETLYKALARKLNGAKKVPGKHKEIEGLEHLDK 685 (943)
T ss_pred eEEecCCcc--------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHhcccccCCCCCcccccccCCCc
Confidence 478888851 1599999999999999999999999999998654 222 122233
Q ss_pred -EEECCeecCCC---------C-hHHHhhcce---------EEcccccCCc-----------ccHHHHhccCCC------
Q 000909 1051 -VRVDGMDVREL---------D-VHWYRKHTA---------LVSQEPVIYA-----------GNIRDNIVFGKL------ 1093 (1230)
Q Consensus 1051 -I~idG~di~~i---------~-~~~lR~~i~---------~VpQdp~Lf~-----------gTIreNl~~g~~------ 1093 (1230)
|.||..++..- + .+.+|.-.+ +-++.-.+.+ |+++.|+.|...
T Consensus 686 ~v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~g~~~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~ 765 (943)
T PRK00349 686 VIDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCD 765 (943)
T ss_pred eEEEecCCCCCCCCCCceeeccccHHHHHHhccCccccccCCCcccCCCCCCCCCCCcccccceEEEEeccCCCccccCc
Confidence 34444333210 1 133444332 3333322222 455555554211
Q ss_pred -----------------CCCHHH-----HHHHHHHh----c---hHHHHHhccccccc-cccCCCCCCChhHHHHHHHHH
Q 000909 1094 -----------------DASENE-----VVEAARAA----N---AHEFISSLKDGYET-ECGERGVQLSGGQRQRIAIAR 1143 (1230)
Q Consensus 1094 -----------------~~sd~e-----i~~al~~a----~---l~~~i~~lp~gldt-~vge~G~~LSgGQrQrlalAR 1143 (1230)
+.+-.| +.++++.. . ..+.+..+ |++. .++.....||||||||++|||
T Consensus 766 ~C~G~R~~~e~l~v~~~g~~i~dvl~ltv~E~l~~f~~~~~i~~~l~~L~~v--gL~~l~l~~~~~tLSgGEkQRl~LAr 843 (943)
T PRK00349 766 VCKGKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIPKIARKLQTLVDV--GLGYIKLGQPATTLSGGEAQRVKLAK 843 (943)
T ss_pred cccCccccccceEEEECCCCHHHHhcCcHHHHHHHHHhchhhhHHHHHHHHC--CCCcccccCCcccCCHHHHHHHHHHH
Confidence 001111 12222111 0 11222222 5543 357778899999999999999
Q ss_pred HHccCC---CEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEE------eCcEEEEecCHh
Q 000909 1144 AIIRNP---TILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKKLDSIALV------ADGRVVERGTYA 1213 (1230)
Q Consensus 1144 All~~p---~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D~I~vl------~~G~Ive~Gt~~ 1213 (1230)
||+++| +++||||||++||+++...+.+.|+++. +|.|+|+|+|+++.+..||+|++| ++|+|++.|+++
T Consensus 844 aL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~ 923 (943)
T PRK00349 844 ELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPE 923 (943)
T ss_pred HHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHH
Confidence 999999 9999999999999999999999999875 589999999999999999999999 799999999999
Q ss_pred HHhhcccc
Q 000909 1214 QLTHMRGA 1221 (1230)
Q Consensus 1214 eLl~~~g~ 1221 (1230)
++.+.++.
T Consensus 924 el~~~~~s 931 (943)
T PRK00349 924 EVAKVEAS 931 (943)
T ss_pred HHHhCccc
Confidence 99976543
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=378.23 Aligned_cols=216 Identities=28% Similarity=0.461 Sum_probs=183.0
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhhe
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREM 433 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i 433 (1230)
.|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...+|+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999963 3599999999999999999999999999999999999999999999999998654 35568899
Q ss_pred EEEccCccccc-hhHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhcc
Q 000909 434 GLVSQEHALFG-TSIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIK 510 (1230)
Q Consensus 434 ~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 510 (1230)
||++|++.++. .|++||+.+... ..+..+..+. +.+.++.+ |++........+||||||||++|||||+.
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~ 152 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAV-----IPSLLEFA--RLESKADVRVALLSGGMKRRLTLARALIN 152 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 99999999885 599999975211 1222222221 12334444 55555666778899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 511 NPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 511 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
+|+++||||||++||+.+...+.+.+++.. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 153 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999998863 58999999999999975 99999999999999999999865
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=360.94 Aligned_cols=201 Identities=25% Similarity=0.444 Sum_probs=171.2
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcce
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1071 (1230)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. .+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 478999999963 459999999999999999999999999999999999999999999999998753 5678999
Q ss_pred EEcccccCCcc-cHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHH
Q 000909 1072 LVSQEPVIYAG-NIRDNIVFGKL--DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARA 1144 (1230)
Q Consensus 1072 ~VpQdp~Lf~g-TIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARA 1144 (1230)
|+||++.+|.+ |++||+.++.. ..+ ++++.++++..++.+. ......+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~a 142 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEY-----------ANKRVEELSKGNQQKVQFIAA 142 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHH-----------HhCcHhhCCHHHHHHHHHHHH
Confidence 99999999875 99999976421 111 2234444454444433 334456899999999999999
Q ss_pred HccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCcEEEEec
Q 000909 1145 IIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERG 1210 (1230)
Q Consensus 1145 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~G 1210 (1230)
++.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999999999999864 47899999999999865 7999999999998865
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=370.53 Aligned_cols=219 Identities=30% Similarity=0.474 Sum_probs=186.8
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhhe
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREM 433 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i 433 (1230)
.|+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 58999999999742 24589999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEEccCcc-cc-chhHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhc
Q 000909 434 GLVSQEHA-LF-GTSIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAII 509 (1230)
Q Consensus 434 ~~v~Q~~~-l~-~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 509 (1230)
+|++|+|. +| ..|+++|+.++... ...++..+ .+.+.++.+ |+.......+.+||||||||++||||++
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHR-----RVSEALKQV--DMLERADYEPNALSGGQKQRVAIAGVLA 158 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999985 44 56899999886321 12222211 122334444 5555566777899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhccCEEEEEeCCeEEEecChhHHHh
Q 000909 510 KNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 510 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
.+|+++||||||++||+.+.+.+.+.+++.. .|+|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 159 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 159 LNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999998864 3789999999999988899999999999999999999865
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=379.79 Aligned_cols=231 Identities=23% Similarity=0.387 Sum_probs=188.0
Q ss_pred cEEEEEEEEECCCC-CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEECCeecCCCCHHHH
Q 000909 354 EIEFEHVKFSYPSR-PDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAD---DGIVRIDGVDIRRLQLKWV 429 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~-~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~---~G~i~~~g~~i~~~~~~~~ 429 (1230)
-++++|++++|+.. ....+++|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.++..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 58999999999642 2246999999999999999999999999999999999999996 9999999999998887655
Q ss_pred h----hheEEEccCc--cccc-hhHHHHHhcCC---CCCCHHHHHHHHHHHhHHHHHHh--CCCcccchhcCCCCCCChh
Q 000909 430 R----REMGLVSQEH--ALFG-TSIKDNIMFGK---LDATMDEVIAAATAANAHNFIRQ--LPEGYETKVGERGALLSGG 497 (1230)
Q Consensus 430 r----~~i~~v~Q~~--~l~~-~ti~~Ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~--l~~g~~t~~~~~g~~LSgG 497 (1230)
+ +.|+||+|+| .+++ .|+.+|+.... ...+.++..+. +.+.++. +|++. ..++..+.+||||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~-----~~~~L~~vgL~~~~-~~~~~~p~~LSgG 165 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEE-----SVRMLDAVKMPEAR-KRMKMYPHEFSGG 165 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHcCCCChH-HHhcCCcccCCHH
Confidence 3 4799999998 4554 37888775321 11222222211 1222333 34332 3367888999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhc-cCEEEEEeCCeEEEecC
Q 000909 498 QKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASL--GRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGT 574 (1230)
Q Consensus 498 qkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~ 574 (1230)
||||++|||||+.+|++||+|||||+||+.+...+.+.|+++.+ |.|+|+|||+++.+.. ||+|+||++|+|+|.|+
T Consensus 166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~ 245 (330)
T PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN 245 (330)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999988643 8999999999999975 99999999999999999
Q ss_pred hhHHHhhcCcHHHHHH
Q 000909 575 HNDLINRIDGHYAKMA 590 (1230)
Q Consensus 575 ~~~l~~~~~~~~~~~~ 590 (1230)
++++.+++...|.+..
T Consensus 246 ~~~i~~~p~~pyt~~l 261 (330)
T PRK09473 246 ARDVFYQPSHPYSIGL 261 (330)
T ss_pred HHHHHhCCCCHHHHHH
Confidence 9999987666676643
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-41 Score=362.22 Aligned_cols=201 Identities=29% Similarity=0.498 Sum_probs=170.7
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCC--CChHHHhhc
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRE--LDVHWYRKH 1069 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~--i~~~~lR~~ 1069 (1230)
|+++||+++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .+...+|++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 478999999963 359999999999999999999999999999999999999999999999999853 455678899
Q ss_pred ceEEcccccCCc-ccHHHHhccCCC---CCCHH----HHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHH
Q 000909 1070 TALVSQEPVIYA-GNIRDNIVFGKL---DASEN----EVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAI 1141 (1230)
Q Consensus 1070 i~~VpQdp~Lf~-gTIreNl~~g~~---~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlal 1141 (1230)
++|+||+|.+|. .|++||+.++.. +.+.+ ++.++++..++.+. +.....+||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADK-----------ADAYPAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhH-----------hhhCccccCHHHHHHHHH
Confidence 999999999886 699999986521 22222 23444444444333 334456899999999999
Q ss_pred HHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCcEE
Q 000909 1142 ARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGRV 1206 (1230)
Q Consensus 1142 ARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~I 1206 (1230)
|||++++|++|||||||++||+++.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|+|
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999875 47899999999999965 899999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=371.03 Aligned_cols=222 Identities=30% Similarity=0.448 Sum_probs=184.8
Q ss_pred cccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecCC--C
Q 000909 352 RGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDA-----DDGIVRIDGVDIRR--L 424 (1230)
Q Consensus 352 ~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~i~~--~ 424 (1230)
.+.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 346999999999963 3599999999999999999999999999999999999984 89999999999864 3
Q ss_pred CHHHHhhheEEEccCccccchhHHHHHhcCCC--CC-CHHHHHHHHHHHhHHHHHHhC--CCcccchhcCCCCCCChhHH
Q 000909 425 QLKWVRREMGLVSQEHALFGTSIKDNIMFGKL--DA-TMDEVIAAATAANAHNFIRQL--PEGYETKVGERGALLSGGQK 499 (1230)
Q Consensus 425 ~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~--~~-~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGqk 499 (1230)
+...+|+.++|++|++.+|+.|++||+.++.. .. ..++..+ .+.+.++.+ ++.+.+..+..+.+||||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~ 174 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDE-----AVERSLRGAALWDEVKDRLHENAFGLSGGQQ 174 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHH-----HHHHHHHHcCCChhHHHHhhCCcccCCHHHH
Confidence 45677889999999999998899999987521 11 1111111 111222222 22223456778899999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHH
Q 000909 500 QRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDL 578 (1230)
Q Consensus 500 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 578 (1230)
||++||||++++|+++||||||++||+.++..+.+.++++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 175 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 175 QRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999999999999987668999999999999865 999999999999999999998
Q ss_pred Hhh
Q 000909 579 INR 581 (1230)
Q Consensus 579 ~~~ 581 (1230)
.+.
T Consensus 255 ~~~ 257 (272)
T PRK14236 255 FTS 257 (272)
T ss_pred hcC
Confidence 753
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=359.47 Aligned_cols=203 Identities=25% Similarity=0.427 Sum_probs=173.8
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheE
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ..+++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 578999999963 4699999999999999999999999999999999999999999999999988754 45678899
Q ss_pred EEccCccccc-hhHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccC
Q 000909 435 LVSQEHALFG-TSIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKN 511 (1230)
Q Consensus 435 ~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 511 (1230)
|++|++.++. .|++||+.++.. ..+.+++.+ .++.+ |++......+.+||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDE---------VLDVV--GLKDSAKKKVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHH---------HHHHc--CCHHHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 9999998885 699999987532 112222322 33443 555556667788999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEec
Q 000909 512 PVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIG 573 (1230)
Q Consensus 512 ~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 573 (1230)
|+++||||||++||+.+.+.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998764 58999999999999875 9999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=348.71 Aligned_cols=178 Identities=33% Similarity=0.588 Sum_probs=165.1
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheE
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
|+++|++++|++. ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5789999999743 23599999999999999999999999999999999999999999999999988766 566788999
Q ss_pred EEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCCCE
Q 000909 435 LVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVI 514 (1230)
Q Consensus 435 ~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~i 514 (1230)
|++|++.+|+.|++||+ +.+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 468999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhccCEEEEEeCCeEEEec
Q 000909 515 LLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIG 573 (1230)
Q Consensus 515 lllDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 573 (1230)
+||||||++||+.+++.+.+.+++..+++|+|++||+++.+..||++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999998876789999999999999889999999999998764
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=369.37 Aligned_cols=225 Identities=26% Similarity=0.452 Sum_probs=188.2
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECC------eecCCCChH
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDG------MDVRELDVH 1064 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG------~di~~i~~~ 1064 (1230)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| .++.+.+..
T Consensus 10 ~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 4999999999963 3599999999999999999999999999999999999999997666654 677777778
Q ss_pred HHhhcceEEcccccCCcc-cHHHHhccCCC--CC-CHHH----HHHHHHHhchHHHHHhccccccccccCCCCCCChhHH
Q 000909 1065 WYRKHTALVSQEPVIYAG-NIRDNIVFGKL--DA-SENE----VVEAARAANAHEFISSLKDGYETECGERGVQLSGGQR 1136 (1230)
Q Consensus 1065 ~lR~~i~~VpQdp~Lf~g-TIreNl~~g~~--~~-sd~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 1136 (1230)
.+|++++|+||+|.+|.+ |+++|+.++.. .. .+++ +.++++..++.+++. ......+..||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY-------DRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-------hhhcCCcccCCHHHH
Confidence 889999999999999976 99999986522 11 2222 345555556543321 122345678999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhHH
Q 000909 1137 QRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQL 1215 (1230)
Q Consensus 1137 QrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eL 1215 (1230)
||++||||++++|++|||||||++||+.+++.+.+.|++..+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999998877899999999999995 5899999999999999999999
Q ss_pred hhcc-cccHHH
Q 000909 1216 THMR-GAFFNL 1225 (1230)
Q Consensus 1216 l~~~-g~y~~l 1225 (1230)
.+.+ ..|.+.
T Consensus 240 ~~~~~~~~~~~ 250 (257)
T PRK14246 240 FTSPKNELTEK 250 (257)
T ss_pred HhCCCcHHHHH
Confidence 8763 335443
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=369.56 Aligned_cols=218 Identities=28% Similarity=0.433 Sum_probs=185.0
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc--C---CCCeEEECCeecCC--CCh
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD--V---EQGSVRVDGMDVRE--LDV 1063 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~--p---~~G~I~idG~di~~--i~~ 1063 (1230)
.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999963 359999999999999999999999999999999999975 4 58999999999864 344
Q ss_pred HHHhhcceEEcccccCCcccHHHHhccCC--CCC-C----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHH
Q 000909 1064 HWYRKHTALVSQEPVIYAGNIRDNIVFGK--LDA-S----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQR 1136 (1230)
Q Consensus 1064 ~~lR~~i~~VpQdp~Lf~gTIreNl~~g~--~~~-s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 1136 (1230)
..+|++++|+||+|.+|..|+++|+.++. .+. . ++++.++++.+++.+.+. ........+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccCCHHHH
Confidence 56788999999999999999999998642 111 1 234455556665543322 223455678999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHH
Q 000909 1137 QRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQL 1215 (1230)
Q Consensus 1137 QrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL 1215 (1230)
||++||||++++|++|||||||++||+++.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++.+.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988767899999999999865 799999999999999999998
Q ss_pred hhc
Q 000909 1216 THM 1218 (1230)
Q Consensus 1216 l~~ 1218 (1230)
...
T Consensus 235 ~~~ 237 (252)
T PRK14255 235 FLN 237 (252)
T ss_pred hcC
Confidence 865
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=368.21 Aligned_cols=213 Identities=26% Similarity=0.424 Sum_probs=184.0
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCC--------CCeEEECCeecCCCCh
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVE--------QGSVRVDGMDVRELDV 1063 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~--------~G~I~idG~di~~i~~ 1063 (1230)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|+ +|+|.+||.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999953 36999999999999999999999999999999999999998 9999999999998888
Q ss_pred HHHhhcceEEccccc-CCcccHHHHhccCCC-C------CC---HHHHHHHHHHhchHHHHHhccccccccccCCCCCCC
Q 000909 1064 HWYRKHTALVSQEPV-IYAGNIRDNIVFGKL-D------AS---ENEVVEAARAANAHEFISSLKDGYETECGERGVQLS 1132 (1230)
Q Consensus 1064 ~~lR~~i~~VpQdp~-Lf~gTIreNl~~g~~-~------~s---d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LS 1132 (1230)
..+|+.++|+||++. +|..|++||+.++.. . .+ ++.++++++..++. +.++.....||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT-----------ALVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcH-----------hhhcCCcccCC
Confidence 888899999999986 578899999987521 1 11 12344455555543 33445567899
Q ss_pred hhHHHHHHHHHHHc---------cCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEE
Q 000909 1133 GGQRQRIAIARAII---------RNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIK-KLDSIAL 1200 (1230)
Q Consensus 1133 gGQrQrlalARAll---------~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~v 1200 (1230)
||||||++|||||+ .+|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+. .||++++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 59999999999999999999999999998753 789999999999986 5899999
Q ss_pred EeCcEEEEecCHhHHhhc
Q 000909 1201 VADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1201 l~~G~Ive~Gt~~eLl~~ 1218 (1230)
|++|+|++.|+++++++.
T Consensus 228 l~~G~i~~~g~~~~~~~~ 245 (272)
T PRK13547 228 LADGAIVAHGAPADVLTP 245 (272)
T ss_pred EECCeEEEecCHHHHcCH
Confidence 999999999999998753
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=337.97 Aligned_cols=220 Identities=27% Similarity=0.437 Sum_probs=191.1
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHH-Hhhh
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKW-VRRE 432 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~-~r~~ 432 (1230)
-++++|++-.|+. ..+|++|||++++||+++++|+||+||||++++|+|+.+|.+|+|.++|+|+...+++. .|..
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 3789999999974 45999999999999999999999999999999999999999999999999999998765 5678
Q ss_pred eEEEccCccccch-hHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccC
Q 000909 433 MGLVSQEHALFGT-SIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKN 511 (1230)
Q Consensus 433 i~~v~Q~~~l~~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 511 (1230)
|+||||.-.+|+. ||+||+.+|......++. .....++..+-+| -+....+.++.+|||||+|-+||||||+.+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~----~~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEA----QERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhccccccc----ccccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 9999999999976 999999987432221111 1111334455566 467778899999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhh
Q 000909 512 PVILLLDEATSALDSESETLVQNALDQASL--GRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 512 ~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 581 (1230)
|++|+|||||.+|-|.-.+.|.+.|+++.+ +.||++|.++...... |||.+||++|+|+.+|+.+||.++
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999998764 6799999999998765 999999999999999999999874
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=365.63 Aligned_cols=220 Identities=30% Similarity=0.465 Sum_probs=184.3
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-----CceEEECCeecCCC--CH
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAD-----DGIVRIDGVDIRRL--QL 426 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~i~~~g~~i~~~--~~ 426 (1230)
.|+++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999963 35999999999999999999999999999999999999997 69999999998643 44
Q ss_pred HHHhhheEEEccCccccchhHHHHHhcCCCC--CC-HHHHHHHHHHHhHHHHHH--hCCCcccchhcCCCCCCChhHHHH
Q 000909 427 KWVRREMGLVSQEHALFGTSIKDNIMFGKLD--AT-MDEVIAAATAANAHNFIR--QLPEGYETKVGERGALLSGGQKQR 501 (1230)
Q Consensus 427 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~~-~~~~~~~~~~~~~~~~i~--~l~~g~~t~~~~~g~~LSgGqkqr 501 (1230)
..+|+.++||+|++.+|+.|++||+.++... .. .++..+.+. +.++ .+.+++....+..+.+||||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVE-----KSLRQAALWDEVKDNLHKSGLALSGGQQQR 155 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHH-----HHHHHhCCchhhhhHhhCCcccCCHHHHHH
Confidence 5778899999999999988999999876321 11 111111111 1122 122223445678889999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 502 IAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 502 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
++||||++.+|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14249 156 LCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFS 235 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999887668999999999999876 89999999999999999999865
Q ss_pred h
Q 000909 581 R 581 (1230)
Q Consensus 581 ~ 581 (1230)
.
T Consensus 236 ~ 236 (251)
T PRK14249 236 R 236 (251)
T ss_pred C
Confidence 3
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=359.08 Aligned_cols=207 Identities=33% Similarity=0.544 Sum_probs=176.2
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheE
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 578999999974 3599999999999999999999999999999999999999999999999998765543 46899
Q ss_pred EEccCccccc-hhHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccC
Q 000909 435 LVSQEHALFG-TSIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKN 511 (1230)
Q Consensus 435 ~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 511 (1230)
|++|++.+|. .|++||+.++... ...++..+ .+.+.++.+ |++........+||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~laral~~~ 148 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDE-----RVREVAELL--QIEHLLDRKPKQLSGGQRQRVALGRAIVRE 148 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHHHHhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999886 5999999875221 12222111 223345555 676667778889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEec
Q 000909 512 PVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIG 573 (1230)
Q Consensus 512 ~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 573 (1230)
|+++||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 149 PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999998864 38999999999999876 9999999999999875
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=367.17 Aligned_cols=223 Identities=26% Similarity=0.420 Sum_probs=184.7
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC--C---CCceEEECCeecCCC--C
Q 000909 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD--A---DDGIVRIDGVDIRRL--Q 425 (1230)
Q Consensus 353 ~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~--~---~~G~i~~~g~~i~~~--~ 425 (1230)
+.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++... +
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 56999999999963 359999999999999999999999999999999999986 4 689999999998653 3
Q ss_pred HHHHhhheEEEccCccccc-hhHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHHhCCCcc----cchhcCCCCCCChh
Q 000909 426 LKWVRREMGLVSQEHALFG-TSIKDNIMFGKLD---ATMDEVIAAATAANAHNFIRQLPEGY----ETKVGERGALLSGG 497 (1230)
Q Consensus 426 ~~~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~----~t~~~~~g~~LSgG 497 (1230)
...+|+.++|++|++.+|. .|++||+.++... .+.++..+ .+.+.++.+ |+ ....+..+.+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADE-----IVESSLKRV--ALWDEVKDRLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHH-----HHHHHHHHc--CCchhhhHHhhCCcCcCCHH
Confidence 4567889999999999987 5999999864211 11111111 122333333 33 23456678899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChh
Q 000909 498 QKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHN 576 (1230)
Q Consensus 498 qkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~ 576 (1230)
||||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988777899999999999865 9999999999999999999
Q ss_pred HHHhhcCcH
Q 000909 577 DLINRIDGH 585 (1230)
Q Consensus 577 ~l~~~~~~~ 585 (1230)
++.......
T Consensus 233 ~~~~~~~~~ 241 (252)
T PRK14256 233 KIFTTPEKK 241 (252)
T ss_pred HHHhCCCcH
Confidence 987643333
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=363.25 Aligned_cols=211 Identities=26% Similarity=0.400 Sum_probs=183.1
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhhe
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREM 433 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i 433 (1230)
-|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 5899999999963 3599999999999999999999999999999999999999999999999999888887788899
Q ss_pred EEEccCccccchhHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCccc-chhcCCCCCCChhHHHHHHHHHHhcc
Q 000909 434 GLVSQEHALFGTSIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYE-TKVGERGALLSGGQKQRIAIARAIIK 510 (1230)
Q Consensus 434 ~~v~Q~~~l~~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri~iARal~~ 510 (1230)
+|++|++.+|+.|++||+.++.. ....+ ...+.+.++.+ |+. +.....+.+||||||||++|||||++
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~-------~~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPD-------PAIFLDDLERF--ALPDTILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChH-------HHHHHHHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999998899999986421 01111 01223455666 664 56788889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhccCEEEEEe-CCeEEEecChh
Q 000909 511 NPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRNADLIAVVD-NGCLVEIGTHN 576 (1230)
Q Consensus 511 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~~l~-~G~i~~~g~~~ 576 (1230)
+|+++||||||++||+.+...+.+.+.+.. .++|+|++||+++.++.||++++|+ ++..+++|+|+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999998864 3889999999999998899999995 77777888886
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=366.24 Aligned_cols=220 Identities=30% Similarity=0.435 Sum_probs=183.6
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC---CCC--CCceEEECCeecCCC--CH
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRF---YDA--DDGIVRIDGVDIRRL--QL 426 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~---~~~--~~G~i~~~g~~i~~~--~~ 426 (1230)
.|+++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+ ++| ++|+|.+||+++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 5899999999963 4599999999999999999999999999999999997 454 589999999998754 34
Q ss_pred HHHhhheEEEccCccccchhHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHHhC--CCcccchhcCCCCCCChhHHHH
Q 000909 427 KWVRREMGLVSQEHALFGTSIKDNIMFGKLD--A-TMDEVIAAATAANAHNFIRQL--PEGYETKVGERGALLSGGQKQR 501 (1230)
Q Consensus 427 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~-~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGqkqr 501 (1230)
..+++.++|++|++.+|+.|++||+.++... . ..++..+ .+.+.++.+ ++.+++...+.+.+||||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQ-----RVEETLKGAALWDEVKDKLKESAFALSGGQQQR 154 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHH-----HHHHHHHHcCCCcchhhhhhCCcccCCHHHHHH
Confidence 5678899999999999988999999875321 1 1111111 122333333 2222345678888999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 502 IAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 502 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~ 234 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT 234 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999999988778999999999999865 99999999999999999999976
Q ss_pred h
Q 000909 581 R 581 (1230)
Q Consensus 581 ~ 581 (1230)
.
T Consensus 235 ~ 235 (250)
T PRK14245 235 N 235 (250)
T ss_pred C
Confidence 4
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=369.48 Aligned_cols=221 Identities=25% Similarity=0.400 Sum_probs=185.1
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCeecCC--CCH
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD-----ADDGIVRIDGVDIRR--LQL 426 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~i~~--~~~ 426 (1230)
-++++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999963 359999999999999999999999999999999999997 699999999999853 345
Q ss_pred HHHhhheEEEccCccccchhHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhC--CCcccchhcCCCCCCChhHHHHH
Q 000909 427 KWVRREMGLVSQEHALFGTSIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQL--PEGYETKVGERGALLSGGQKQRI 502 (1230)
Q Consensus 427 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGqkqri 502 (1230)
..++++++|++|++.+|..|++||+.++.. ....++..+ ..+.+.++.+ .+++....+..+.+||||||||+
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv 176 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLD----EIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRL 176 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHH----HHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHH
Confidence 667889999999999998899999987531 111111111 1111222222 12444556778899999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhh
Q 000909 503 AIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 503 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 581 (1230)
+|||||+++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 177 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~ 256 (271)
T PRK14238 177 CIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSN 256 (271)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 9999999999999999999999999999999999988778999999999999865 999999999999999999998764
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=368.56 Aligned_cols=218 Identities=29% Similarity=0.433 Sum_probs=187.8
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CCCeEEECCeecCC--CCh
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV-----EQGSVRVDGMDVRE--LDV 1063 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i~~ 1063 (1230)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+ .+.
T Consensus 20 ~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 20 VFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred eEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 5999999999963 3599999999999999999999999999999999999864 58999999999864 344
Q ss_pred HHHhhcceEEcccccCCcccHHHHhccCCCC-----CCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHH
Q 000909 1064 HWYRKHTALVSQEPVIYAGNIRDNIVFGKLD-----ASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQR 1138 (1230)
Q Consensus 1064 ~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~~-----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 1138 (1230)
..+|++++|+||++.+|+.|+++|+.++... ..++++.++++.+++.+.+.. ........||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHHHH
Confidence 5678999999999999999999999875311 123445666777777554432 2334567899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEe---------CcEEEE
Q 000909 1139 IAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIK-KLDSIALVA---------DGRVVE 1208 (1230)
Q Consensus 1139 lalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~D~I~vl~---------~G~Ive 1208 (1230)
++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+. .||++++|+ +|++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 9999999999999999999999999999999999999877899999999999986 479999997 899999
Q ss_pred ecCHhHHhhc
Q 000909 1209 RGTYAQLTHM 1218 (1230)
Q Consensus 1209 ~Gt~~eLl~~ 1218 (1230)
.|+++++...
T Consensus 250 ~g~~~~~~~~ 259 (274)
T PRK14265 250 FSPTEQMFGS 259 (274)
T ss_pred eCCHHHHHhC
Confidence 9999999865
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=367.70 Aligned_cols=220 Identities=26% Similarity=0.373 Sum_probs=182.6
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC--C---CCceEEECCeecCCC--CH
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD--A---DDGIVRIDGVDIRRL--QL 426 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~--~---~~G~i~~~g~~i~~~--~~ 426 (1230)
-++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999963 359999999999999999999999999999999999954 6 499999999998643 34
Q ss_pred HHHhhheEEEccCccccchhHHHHHhcCCC--CCC-HHHHHHHHHHHhHHHHHHhC--CCcccchhcCCCCCCChhHHHH
Q 000909 427 KWVRREMGLVSQEHALFGTSIKDNIMFGKL--DAT-MDEVIAAATAANAHNFIRQL--PEGYETKVGERGALLSGGQKQR 501 (1230)
Q Consensus 427 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~--~~~-~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGqkqr 501 (1230)
..+|+.++||+|++.+|+.|++||+.++.. ... .++..+ .+.+.++.+ ..++.+..+..+.+||||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDE-----AVEKSLKGASIWDEVKDRLHDSALGLSGGQQQR 156 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHH-----HHHHHHHHcCCchhHHHHHhcCcccCCHHHHHH
Confidence 567889999999999999999999987521 111 111111 112223333 1122345677888999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 502 IAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 502 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
++||||++.+|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 236 (252)
T PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFM 236 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987667999999999998865 99999999999999999999876
Q ss_pred h
Q 000909 581 R 581 (1230)
Q Consensus 581 ~ 581 (1230)
.
T Consensus 237 ~ 237 (252)
T PRK14239 237 N 237 (252)
T ss_pred C
Confidence 4
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=379.60 Aligned_cols=217 Identities=27% Similarity=0.447 Sum_probs=183.7
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhhe
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREM 433 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i 433 (1230)
-|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...++.|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 5999999999963 45999999999999999999999999999999999999999999999999997654 4678899
Q ss_pred EEEccCccccc-hhHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhcc
Q 000909 434 GLVSQEHALFG-TSIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIK 510 (1230)
Q Consensus 434 ~~v~Q~~~l~~-~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 510 (1230)
||+||++.++. .|++||+.+... ..+..+..+. +.+.++.+ |++........+||||||||++|||||+.
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~~--~L~~~~~~~~~~LS~G~kqrv~lA~aL~~ 189 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAV-----IPSLLEFA--RLESKADARVSDLSGGMKRRLTLARALIN 189 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchhhCCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999875 599999985211 1122222221 12333333 55555566667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhh
Q 000909 511 NPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 511 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 581 (1230)
+|+++||||||++||+.+...+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|+++..|+++++.+.
T Consensus 190 ~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 190 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999998864 58999999999999976 999999999999999999998753
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=363.54 Aligned_cols=213 Identities=32% Similarity=0.453 Sum_probs=176.5
Q ss_pred EEEEEEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCH---HHHh
Q 000909 355 IEFEHVKFSYPSRP-DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQL---KWVR 430 (1230)
Q Consensus 355 i~~~~v~~~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~---~~~r 430 (1230)
|+++||+++|++.. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999996421 1259999999999999999999999999999999999999999999999999987763 5678
Q ss_pred hheEEEccCc--ccc-chhHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHHhCCCccc-chhcCCCCCCChhHHHHHH
Q 000909 431 REMGLVSQEH--ALF-GTSIKDNIMFGKLD---ATMDEVIAAATAANAHNFIRQLPEGYE-TKVGERGALLSGGQKQRIA 503 (1230)
Q Consensus 431 ~~i~~v~Q~~--~l~-~~ti~~Ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkqri~ 503 (1230)
++++|++|++ .++ ..|++||+.++... ...++..+. ...+.++.+ |+. ........+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~----~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~ 155 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKE----AVLLLLVGV--GLPEEVLNRYPHELSGGQRQRVA 155 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHH----HHHHHHHHC--CCChhHhhCCchhcCHHHHHHHH
Confidence 8999999998 344 46999999864211 111111111 012345555 663 4567888999999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhc-cCEEEEEeCCeEEEec
Q 000909 504 IARAIIKNPVILLLDEATSALDSESETLVQNALDQASL--GRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIG 573 (1230)
Q Consensus 504 iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 573 (1230)
||||++.+|+++||||||++||+.++..+.+.|++..+ |+|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 156 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 156 IARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999988643 8999999999999874 9999999999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=366.00 Aligned_cols=216 Identities=28% Similarity=0.469 Sum_probs=184.8
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecC------CCCHHH
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIR------RLQLKW 428 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~------~~~~~~ 428 (1230)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 789999999963 35999999999999999999999999999999999999999999999999873 123456
Q ss_pred HhhheEEEccCccccch-hHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHH
Q 000909 429 VRREMGLVSQEHALFGT-SIKDNIMFGKL---DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAI 504 (1230)
Q Consensus 429 ~r~~i~~v~Q~~~l~~~-ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 504 (1230)
+|++|+|++|++.+|.+ |++||+.++.. ....++. ...+.+.++.+ |++..+.....+||||||||++|
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~l 152 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQA-----LARAEKLLERL--RLKPYADRFPLHLSGGQQQRVAI 152 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHH
Confidence 78899999999999875 99999975311 1112221 12334556666 77777788889999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 505 ARAIIKNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 505 ARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
|||++.+|+++||||||++||+++...+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 153 aral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 999999999999999999999999999999998864 48999999999999865 99999999999999999888653
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=368.01 Aligned_cols=222 Identities=22% Similarity=0.400 Sum_probs=188.1
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHH-hhh
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWV-RRE 432 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~-r~~ 432 (1230)
-++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999988776544 456
Q ss_pred eEEEccCccccch-hHHHHHhcCCCCCCH----------HHH--HHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHH
Q 000909 433 MGLVSQEHALFGT-SIKDNIMFGKLDATM----------DEV--IAAATAANAHNFIRQLPEGYETKVGERGALLSGGQK 499 (1230)
Q Consensus 433 i~~v~Q~~~l~~~-ti~~Ni~~~~~~~~~----------~~~--~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 499 (1230)
++|++|++.+|.. |++||+.++...... ... ........+.+.++.+ |++...+..+.+||||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLEHANRQAGNLAYGQQ 159 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--ChhhhhhCChhhCCHHHH
Confidence 9999999999986 999999986321000 000 0001112334556666 787788889999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChh
Q 000909 500 QRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS-L-GRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHN 576 (1230)
Q Consensus 500 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~ 576 (1230)
||++||||++.+|++|||||||++||+.+.+.+.+.|.+.. + |+|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 239 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPE 239 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHH
Confidence 99999999999999999999999999999999999998764 3 7899999999999866 9999999999999999998
Q ss_pred HHHh
Q 000909 577 DLIN 580 (1230)
Q Consensus 577 ~l~~ 580 (1230)
++.+
T Consensus 240 ~~~~ 243 (255)
T PRK11300 240 EIRN 243 (255)
T ss_pred HHhh
Confidence 8764
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=371.67 Aligned_cols=221 Identities=29% Similarity=0.483 Sum_probs=187.6
Q ss_pred cEEEEEEEEECCCCC---CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCC-HHHH
Q 000909 354 EIEFEHVKFSYPSRP---DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQ-LKWV 429 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~---~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~-~~~~ 429 (1230)
-|+++|++++|++.. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997421 246999999999999999999999999999999999999999999999999987653 3567
Q ss_pred hhheEEEccCcc--ccchhHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHH
Q 000909 430 RREMGLVSQEHA--LFGTSIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIA 505 (1230)
Q Consensus 430 r~~i~~v~Q~~~--l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 505 (1230)
++.+||++|+|. ++..|+.+|+.|+... .+..+..+ .+.+.++.+ |++........+||||||||++||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LS~G~~qrv~la 156 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRE-----RVDESLKKV--GMYEYRRHAPHLLSGGQKQRVAIA 156 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHH-----HHHHHHHHC--CCHhHhhCCcccCCHHHHHHHHHH
Confidence 889999999984 6667999999986321 12222211 123344444 666667777889999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhccCEEEEEeCCeEEEecChhHHHhh
Q 000909 506 RAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 506 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 581 (1230)
|||+.+|+++||||||++||+.+...+.+.++++. .|+|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 157 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 157 GILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999998864 38999999999999988999999999999999999998763
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=367.32 Aligned_cols=218 Identities=30% Similarity=0.439 Sum_probs=183.2
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCeecCC--CCH
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD-----ADDGIVRIDGVDIRR--LQL 426 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~i~~--~~~ 426 (1230)
-|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|++. |++|+|.++|.++.. .+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4899999999963 359999999999999999999999999999999999986 479999999999853 345
Q ss_pred HHHhhheEEEccCccccchhHHHHHhcCCCCC--C---HHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHH
Q 000909 427 KWVRREMGLVSQEHALFGTSIKDNIMFGKLDA--T---MDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQR 501 (1230)
Q Consensus 427 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~--~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 501 (1230)
..++++++|++|++.+|+.|++||+.++.... . .+++.++++..++.+. ++...+..+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDE-------VKDKLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhh-------HHHHhcCCcccCCHHHHHH
Confidence 67788999999999999889999999764211 1 1112222233322222 2234567788999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEe---------CCeEEE
Q 000909 502 IAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVD---------NGCLVE 571 (1230)
Q Consensus 502 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~---------~G~i~~ 571 (1230)
++||||++++|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+.. ||+|++|+ +|++++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999987767899999999999866 99999998 899999
Q ss_pred ecChhHHHhh
Q 000909 572 IGTHNDLINR 581 (1230)
Q Consensus 572 ~g~~~~l~~~ 581 (1230)
.|+++|+.+.
T Consensus 240 ~~~~~~~~~~ 249 (264)
T PRK14243 240 FDRTEKIFNS 249 (264)
T ss_pred eCCHHHHHhC
Confidence 9999999764
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=366.72 Aligned_cols=227 Identities=23% Similarity=0.380 Sum_probs=187.0
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecCCC--CH
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDA-----DDGIVRIDGVDIRRL--QL 426 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~i~~~--~~ 426 (1230)
-|+++|++|+|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999963 4599999999999999999999999999999999999763 489999999999765 45
Q ss_pred HHHhhheEEEccCccccchhHHHHHhcCCCCC---CHHHHHHHHHHHhHHHHHHhC--CCcccchhcCCCCCCChhHHHH
Q 000909 427 KWVRREMGLVSQEHALFGTSIKDNIMFGKLDA---TMDEVIAAATAANAHNFIRQL--PEGYETKVGERGALLSGGQKQR 501 (1230)
Q Consensus 427 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~---~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGqkqr 501 (1230)
...++.++|++|++.+|+.|++||+.++.... ...+..+ .+.+.++.+ .+++.+..++.+.+||||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 157 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDT-----IVEKSLKGAALWDEVKDRLHDSALSLSGGQQQR 157 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHH-----HHHHHHHHhcCchhhHHHhhcChhhCCHHHHHH
Confidence 56788999999999999899999999863211 1111111 111222222 2234455778889999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 502 IAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 502 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 158 v~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 237 (253)
T PRK14261 158 LCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFE 237 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHh
Confidence 99999999999999999999999999999999999987667999999999999965 99999999999999999999876
Q ss_pred hcCcHHHH
Q 000909 581 RIDGHYAK 588 (1230)
Q Consensus 581 ~~~~~~~~ 588 (1230)
+....+.+
T Consensus 238 ~~~~~~~~ 245 (253)
T PRK14261 238 NPHEELTE 245 (253)
T ss_pred CCCcHHHH
Confidence 43333433
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=374.86 Aligned_cols=219 Identities=29% Similarity=0.488 Sum_probs=187.6
Q ss_pred CcEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCCCeEEECCeecCCC--C
Q 000909 990 GKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD-----VEQGSVRVDGMDVREL--D 1062 (1230)
Q Consensus 990 g~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~i--~ 1062 (1230)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++... +
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35999999999963 359999999999999999999999999999999999986 6899999999998753 4
Q ss_pred hHHHhhcceEEcccccCCcccHHHHhccCCCC-------------------CCHHHHHHHHHHhchHHHHHhcccccccc
Q 000909 1063 VHWYRKHTALVSQEPVIYAGNIRDNIVFGKLD-------------------ASENEVVEAARAANAHEFISSLKDGYETE 1123 (1230)
Q Consensus 1063 ~~~lR~~i~~VpQdp~Lf~gTIreNl~~g~~~-------------------~sd~ei~~al~~a~l~~~i~~lp~gldt~ 1123 (1230)
...+|++++|+||++.+|++|++||+.++... ..++++.++++.+++.+. +++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDE-------VNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchh-------hhHH
Confidence 56788999999999999999999999865210 012345555665555333 3344
Q ss_pred ccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEE-EEE
Q 000909 1124 CGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK-LDSI-ALV 1201 (1230)
Q Consensus 1124 vge~G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I-~vl 1201 (1230)
+...+.+||||||||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+| ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 55667899999999999999999999999999999999999999999999998777899999999999865 8997 578
Q ss_pred eCcEEEEecCHhHHhhc
Q 000909 1202 ADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1202 ~~G~Ive~Gt~~eLl~~ 1218 (1230)
++|++++.|+++++.+.
T Consensus 274 ~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 274 TGGELVEYDDTDKIFEN 290 (305)
T ss_pred cCCEEEEeCCHHHHHhC
Confidence 99999999999999764
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=359.75 Aligned_cols=205 Identities=35% Similarity=0.577 Sum_probs=174.7
Q ss_pred EEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheEE
Q 000909 356 EFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGL 435 (1230)
Q Consensus 356 ~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~~ 435 (1230)
+++|++++|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.|+|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999742 2459999999999999999999999999999999999999999999999999988777788899999
Q ss_pred EccCcc--ccchhHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccC
Q 000909 436 VSQEHA--LFGTSIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKN 511 (1230)
Q Consensus 436 v~Q~~~--l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 511 (1230)
++|++. +++.|++||+.++... ....+.. ..+.+.++.+ |++........+||||||||++|||||+.+
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~ 152 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIE-----ERVEEALELV--GLEGLRDRSPFTLSGGQKQRVAIAGVLAMD 152 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999984 5678999999875321 1222111 1223445555 676667778889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCe
Q 000909 512 PVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGC 568 (1230)
Q Consensus 512 ~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~ 568 (1230)
|+++||||||++||+.+++.+.+.|.+.. +|+|+|++||+++.+.. ||+|++|++|+
T Consensus 153 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999998864 48999999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=379.46 Aligned_cols=225 Identities=21% Similarity=0.334 Sum_probs=185.3
Q ss_pred EEEEEEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc----CCCCeEEECCeecCCCChHHH
Q 000909 992 IEMRRVDFAYPSRP-DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD----VEQGSVRVDGMDVRELDVHWY 1066 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~----p~~G~I~idG~di~~i~~~~l 1066 (1230)
|+++||+++|+.+. ..++|+||||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||+|+.+++.+.+
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 79999999996421 2459999999999999999999999999999999999986 589999999999998887765
Q ss_pred h----hcceEEcccccC--C-cccHHHHhccCC------C----C--CCHHHHHHHHHHhchHHHHHhccccccccccCC
Q 000909 1067 R----KHTALVSQEPVI--Y-AGNIRDNIVFGK------L----D--ASENEVVEAARAANAHEFISSLKDGYETECGER 1127 (1230)
Q Consensus 1067 R----~~i~~VpQdp~L--f-~gTIreNl~~g~------~----~--~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~ 1127 (1230)
+ ++|+||||+|.. + ..||.+|+.... . . ...+++.++++.+++.+.-. .....
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~~~~~ 155 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--------AMRSF 155 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--------HHhCC
Confidence 4 479999999963 3 358999985310 0 0 01234566777777753211 11234
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCc
Q 000909 1128 GVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKK-LDSIALVADG 1204 (1230)
Q Consensus 1128 G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G 1204 (1230)
...||||||||++|||||+.+|+|||||||||+||+.+...+.+.|+++.+ |.|+|+|||+++.+.. ||+|+||++|
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G 235 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG 235 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 568999999999999999999999999999999999999999999998753 7999999999999965 8999999999
Q ss_pred EEEEecCHhHHhhc-ccccHH
Q 000909 1205 RVVERGTYAQLTHM-RGAFFN 1224 (1230)
Q Consensus 1205 ~Ive~Gt~~eLl~~-~g~y~~ 1224 (1230)
+|+|.|+++++.++ ...|.+
T Consensus 236 ~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 236 QTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred EEEEECCHHHHHhCCCCHHHH
Confidence 99999999999876 344544
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=369.94 Aligned_cols=222 Identities=25% Similarity=0.375 Sum_probs=185.4
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhhe
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREM 433 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i 433 (1230)
.|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5899999999963 3599999999999999999999999999999999999999999999999999888888888899
Q ss_pred EEEccCccccch-hHHHHHhcCCCCCC-HHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccC
Q 000909 434 GLVSQEHALFGT-SIKDNIMFGKLDAT-MDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKN 511 (1230)
Q Consensus 434 ~~v~Q~~~l~~~-ti~~Ni~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 511 (1230)
+|++|++.++.. |+.||+.++..... ............+.+.++.+ |++........+||||||||++||||++.+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~ 165 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLV--GLKPLAHRLVDSLSGGERQRAWIAMLVAQD 165 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHc--CCHHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999877655 99999997632110 00000000011223344444 555556667779999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 512 PVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 512 ~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
|+++||||||++||+.+.+.+.+.|.++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 166 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 166 SRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 99999999999999999999999998864 38999999999999865 99999999999999999988865
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=369.10 Aligned_cols=218 Identities=29% Similarity=0.477 Sum_probs=182.6
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCeecCCCC--HH
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD-----ADDGIVRIDGVDIRRLQ--LK 427 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~i~~~~--~~ 427 (1230)
-+++|++|+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 468999999963 459999999999999999999999999999999999986 47999999999986543 33
Q ss_pred HHhhheEEEccCccccchhHHHHHhcCCC--CC--CHHHHHHHHHHHhHHHHHHhCCCccc----chhcCCCCCCChhHH
Q 000909 428 WVRREMGLVSQEHALFGTSIKDNIMFGKL--DA--TMDEVIAAATAANAHNFIRQLPEGYE----TKVGERGALLSGGQK 499 (1230)
Q Consensus 428 ~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~--~~--~~~~~~~~~~~~~~~~~i~~l~~g~~----t~~~~~g~~LSgGqk 499 (1230)
.+|+.++|++|++.+|+.|++||+.++.. .. ..++.. ..+.+.++.+ |+. +.++..+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLD-----EIVEKSLTSV--GLWEELGDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHH-----HHHHHHHHHc--CCCchhhhHhhcChhhCCHHHH
Confidence 56889999999999998999999987521 11 111111 1122334444 442 345677889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHH
Q 000909 500 QRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDL 578 (1230)
Q Consensus 500 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 578 (1230)
||++||||++++|+++||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987778999999999999875 999999999999999999998
Q ss_pred Hhhc
Q 000909 579 INRI 582 (1230)
Q Consensus 579 ~~~~ 582 (1230)
.+.+
T Consensus 236 ~~~~ 239 (251)
T PRK14244 236 FKNP 239 (251)
T ss_pred hcCC
Confidence 7643
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=366.03 Aligned_cols=216 Identities=28% Similarity=0.415 Sum_probs=185.4
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheE
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999973 35999999999999999999999999999999999999999999999999998888777888999
Q ss_pred EEccCccc-cchhHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhc--
Q 000909 435 LVSQEHAL-FGTSIKDNIMFGKLDA--TMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAII-- 509 (1230)
Q Consensus 435 ~v~Q~~~l-~~~ti~~Ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~-- 509 (1230)
|++|++.+ +..|++||+.++.... ..++.. ..+.+.++.+ |++........+||||||||++|||||+
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGe~qrv~la~al~~~ 152 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDD-----ALVAAALAQV--DLAHLAGRDYPQLSGGEQQRVQLARVLAQL 152 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHH-----HHHHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhcc
Confidence 99999987 5679999998763211 111111 1123344444 6666667778899999999999999999
Q ss_pred ----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 510 ----KNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 510 ----~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
.+|+++||||||++||+.+...+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 153 ~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 153 WEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred cccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 5999999999999999999999999998864 58999999999999875 99999999999999999988865
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=366.76 Aligned_cols=222 Identities=28% Similarity=0.403 Sum_probs=185.5
Q ss_pred cccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCeecCC--C
Q 000909 352 RGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD-----ADDGIVRIDGVDIRR--L 424 (1230)
Q Consensus 352 ~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~i~~--~ 424 (1230)
...|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.+||.++.. .
T Consensus 18 ~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 18 EIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 346999999999963 469999999999999999999999999999999999997 589999999999864 3
Q ss_pred CHHHHhhheEEEccCccccchhHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHHhC--CCcccchhcCCCCCCChhHH
Q 000909 425 QLKWVRREMGLVSQEHALFGTSIKDNIMFGKLD--A-TMDEVIAAATAANAHNFIRQL--PEGYETKVGERGALLSGGQK 499 (1230)
Q Consensus 425 ~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~-~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGqk 499 (1230)
+...+++.|+|++|++.+|..|++||+.++... . ..++.. ..+.+.++.+ .+++++..+..+.+||||||
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~ 169 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLD-----EIVETSLKQAALWDQVKDDLHKSALTLSGGQQ 169 (267)
T ss_pred ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHH-----HHHHHHHHHcCCCchhhhhhcCCcccCCHHHH
Confidence 455678899999999999989999999875321 1 111111 1112223332 11223556788899999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHH
Q 000909 500 QRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDL 578 (1230)
Q Consensus 500 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 578 (1230)
||++||||++++|+++||||||++||+.+.+.+.+.|+++.++.|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999998
Q ss_pred Hhh
Q 000909 579 INR 581 (1230)
Q Consensus 579 ~~~ 581 (1230)
...
T Consensus 250 ~~~ 252 (267)
T PRK14237 250 FTN 252 (267)
T ss_pred hcC
Confidence 753
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=374.74 Aligned_cols=215 Identities=22% Similarity=0.426 Sum_probs=187.9
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheE
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
++++|++++|++ +.+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. +...+++++|
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999963 459999999999999999999999999999999999999999999999999876 3456788999
Q ss_pred EEccCccccch-hHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccC
Q 000909 435 LVSQEHALFGT-SIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKN 511 (1230)
Q Consensus 435 ~v~Q~~~l~~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 511 (1230)
|+||++.+++. |++||+.+... ....++..+ .+.+.++.+ |++........+||||||||++|||||+.+
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-----RVEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 99999999976 99999986321 111222211 233456666 777777888899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 512 PVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 512 ~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||+|++|++|+++..|+++++.+
T Consensus 152 p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999999988778999999999999876 99999999999999999999865
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=368.00 Aligned_cols=221 Identities=25% Similarity=0.407 Sum_probs=185.6
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheE
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+..++++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 45999999999999999999999999999999999999999999999999998888778888999
Q ss_pred EEccCccccch-hHHHHHhcCCCCCC-HHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCC
Q 000909 435 LVSQEHALFGT-SIKDNIMFGKLDAT-MDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNP 512 (1230)
Q Consensus 435 ~v~Q~~~l~~~-ti~~Ni~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 512 (1230)
|++|++.++.+ |+.||+.++..... ............+.+.++.+ |++......+..||||||||++||||++.+|
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p 157 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQT--RINHLADRRLTDLSGGQRQRAFLAMVLAQDT 157 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHc--CCHHHHcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99999988876 99999998632100 00000000011122334443 6665667778899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 513 VILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 513 ~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
++|||||||++||+++...+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 158 ~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 158 PVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999998764 48999999999999865 99999999999999999998865
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=365.03 Aligned_cols=205 Identities=31% Similarity=0.416 Sum_probs=177.1
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhh
Q 000909 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRRE 432 (1230)
Q Consensus 353 ~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~ 432 (1230)
..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.
T Consensus 11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~ 82 (257)
T PRK11247 11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EARED 82 (257)
T ss_pred CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCc
Confidence 35999999999963 35999999999999999999999999999999999999999999999998763 45778
Q ss_pred eEEEccCccccc-hhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccC
Q 000909 433 MGLVSQEHALFG-TSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKN 511 (1230)
Q Consensus 433 i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 511 (1230)
++|++|++.+|+ .|++||+.++......+ .+.+.++.+ |++......+.+||||||||++|||||+++
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~---------~~~~~l~~~--gl~~~~~~~~~~LSgGqkqrl~laraL~~~ 151 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGLKGQWRD---------AALQALAAV--GLADRANEWPAALSGGQKQRVALARALIHR 151 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhcccchHHH---------HHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999999987 59999999863211111 223444555 666667778889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChh
Q 000909 512 PVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHN 576 (1230)
Q Consensus 512 ~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~ 576 (1230)
|+++||||||++||+.+...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 152 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 152 PGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999998753 47999999999999865 9999999999999988754
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=369.90 Aligned_cols=216 Identities=25% Similarity=0.368 Sum_probs=181.9
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecC--CCCHHHHhhh
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIR--RLQLKWVRRE 432 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~--~~~~~~~r~~ 432 (1230)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++. ..+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 689999999963 35999999999999999999999999999999999999999999999999985 3344567889
Q ss_pred eEEEccCcc--ccchhHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHh
Q 000909 433 MGLVSQEHA--LFGTSIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAI 508 (1230)
Q Consensus 433 i~~v~Q~~~--l~~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 508 (1230)
|+||+|++. ++..|+.+|+.++.. ..+.++..+ .+.+.++.+ |++........+||||||||++|||||
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~laraL 151 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITR-----RVDEALTLV--DAQHFRHQPIQCLSHGQKKRVAIAGAL 151 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHhHhcCCchhCCHHHHHHHHHHHHH
Confidence 999999985 567799999987421 112222211 122334444 555555667789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 509 IKNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 509 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
+.+|+++||||||++||+.+...+.+.|++.. +|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999998864 58999999999999865 99999999999999999998865
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=382.39 Aligned_cols=211 Identities=20% Similarity=0.372 Sum_probs=184.0
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCC----ChHHHh
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVREL----DVHWYR 1067 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i----~~~~lR 1067 (1230)
|++ ||+++|++ . .+ |+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+. +....|
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 667 99999953 2 23 99999999999999999999999999999999999999999999998653 245568
Q ss_pred hcceEEcccccCCc-ccHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHc
Q 000909 1068 KHTALVSQEPVIYA-GNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAII 1146 (1230)
Q Consensus 1068 ~~i~~VpQdp~Lf~-gTIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll 1146 (1230)
++++||||++.+|. .|++||+.++.....++++.++++..++.++.++ ...+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDR-----------YPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhC-----------CcccCCHHHHHHHHHHHHHH
Confidence 89999999999996 5999999987544445667777777777655443 34589999999999999999
Q ss_pred cCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHhhcc
Q 000909 1147 RNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTHMR 1219 (1230)
Q Consensus 1147 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~~ 1219 (1230)
++|++||||||||+||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+++
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 99999999999999999999999999998753 7899999999998865 7999999999999999999998764
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=366.99 Aligned_cols=213 Identities=22% Similarity=0.334 Sum_probs=175.9
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc--ccCCCCeEEECCeecCCCChHHH-hh
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRF--YDVEQGSVRVDGMDVRELDVHWY-RK 1068 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl--~~p~~G~I~idG~di~~i~~~~l-R~ 1068 (1230)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.+||.++...+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 578999999963 4599999999999999999999999999999999999 47999999999999988877654 45
Q ss_pred cceEEcccccCCcc-cHHHHhccCCC---C------CC----HHHHHHHHHHhchHHHHHhccccccccccCCCC-CCCh
Q 000909 1069 HTALVSQEPVIYAG-NIRDNIVFGKL---D------AS----ENEVVEAARAANAHEFISSLKDGYETECGERGV-QLSG 1133 (1230)
Q Consensus 1069 ~i~~VpQdp~Lf~g-TIreNl~~g~~---~------~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~-~LSg 1133 (1230)
.++|+||+|.+|.+ |+++|+.+... . .+ ++++.++++..++.+. ....... .|||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~~LS~ 147 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEE----------FLNRSVNEGFSG 147 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchh----------hcccccccCcCH
Confidence 59999999999886 89999865311 0 11 1223344444443211 1112222 5999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh--cCEEEEEeCcEEEEec
Q 000909 1134 GQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK--LDSIALVADGRVVERG 1210 (1230)
Q Consensus 1134 GQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~--~D~I~vl~~G~Ive~G 1210 (1230)
|||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999999875 47899999999999986 7999999999999999
Q ss_pred CHhHHhh
Q 000909 1211 TYAQLTH 1217 (1230)
Q Consensus 1211 t~~eLl~ 1217 (1230)
++++.-.
T Consensus 228 ~~~~~~~ 234 (243)
T TIGR01978 228 DVELAKE 234 (243)
T ss_pred CHHHhcc
Confidence 9986543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=356.98 Aligned_cols=202 Identities=32% Similarity=0.546 Sum_probs=175.8
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcce
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1071 (1230)
++++||+++|+. +++|+||++++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+.+ .+|++++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999952 468999999999999999999999999999999999999999999999997654 4678899
Q ss_pred EEcccccCCcc-cHHHHhccCC-CC-----CCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHH
Q 000909 1072 LVSQEPVIYAG-NIRDNIVFGK-LD-----ASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARA 1144 (1230)
Q Consensus 1072 ~VpQdp~Lf~g-TIreNl~~g~-~~-----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARA 1144 (1230)
||||+|.+|.+ |++||+.++. +. ..++++.++++..++.+...+.| .+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999875 9999997531 11 12345667788888776655443 4799999999999999
Q ss_pred HccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCcEEEEecC
Q 000909 1145 IIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKK-LDSIALVADGRVVERGT 1211 (1230)
Q Consensus 1145 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt 1211 (1230)
++++|+++||||||++||+++...+.+.|++..+ ++|+|+|||+++.+.. ||++++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999998753 7899999999999865 79999999999999874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=366.58 Aligned_cols=220 Identities=27% Similarity=0.400 Sum_probs=186.2
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecCCCC-HH
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDA-----DDGIVRIDGVDIRRLQ-LK 427 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~i~~~~-~~ 427 (1230)
.++++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999973 4699999999999999999999999999999999999986 7999999999987653 45
Q ss_pred HHhhheEEEccCccccchhHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhC--CCcccchhcCCCCCCChhHHHHH
Q 000909 428 WVRREMGLVSQEHALFGTSIKDNIMFGKL---DATMDEVIAAATAANAHNFIRQL--PEGYETKVGERGALLSGGQKQRI 502 (1230)
Q Consensus 428 ~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGqkqri 502 (1230)
.+++.++|++|++.+|+.|++||+.++.. ..+.++..+.+ .+.++.+ ++.+.+.+.+.+.+||||||||+
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl 172 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVA-----QARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL 172 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHcCCCchhhhHhhCCcccCCHHHHHHH
Confidence 67889999999999999999999987532 12233322211 2223333 22223456778889999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhh
Q 000909 503 AIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 503 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 581 (1230)
+||||++.+|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252 (276)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999987667899999999999865 999999999999999999999764
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=367.56 Aligned_cols=224 Identities=23% Similarity=0.375 Sum_probs=183.1
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCee-----cCCCChHH
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMD-----VRELDVHW 1065 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~d-----i~~i~~~~ 1065 (1230)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999963 359999999999999999999999999999999999999999999999999 87776654
Q ss_pred ----HhhcceEEccccc--CCc-ccHHHHhccCC---CCCCHHHHHHHHHHhchHHHHHhcccccc-ccccCCCCCCChh
Q 000909 1066 ----YRKHTALVSQEPV--IYA-GNIRDNIVFGK---LDASENEVVEAARAANAHEFISSLKDGYE-TECGERGVQLSGG 1134 (1230)
Q Consensus 1066 ----lR~~i~~VpQdp~--Lf~-gTIreNl~~g~---~~~sd~ei~~al~~a~l~~~i~~lp~gld-t~vge~G~~LSgG 1134 (1230)
+|+.++||||+|. ++. .|+++|+.+.. ......++.+ ...++++.++ ++ +.....+.+||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~--l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVE--IDAARIDDLPTTFSGG 155 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcC--CChhHHhCCCccCCHH
Confidence 3567999999984 333 48888885321 0111122211 1244555542 32 3455677899999
Q ss_pred HHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCcEEEEecC
Q 000909 1135 QRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIK-KLDSIALVADGRVVERGT 1211 (1230)
Q Consensus 1135 QrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt 1211 (1230)
||||++||||++++|+||||||||++||+++.+.+.+.|++..+ +.|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~ 235 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL 235 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998653 789999999999997 489999999999999999
Q ss_pred HhHHhhcc-cccHH
Q 000909 1212 YAQLTHMR-GAFFN 1224 (1230)
Q Consensus 1212 ~~eLl~~~-g~y~~ 1224 (1230)
++++..++ ..|.+
T Consensus 236 ~~~~~~~~~~~~~~ 249 (258)
T PRK11701 236 TDQVLDDPQHPYTQ 249 (258)
T ss_pred HHHHhcCCCCHHHH
Confidence 99998653 33543
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=358.83 Aligned_cols=206 Identities=33% Similarity=0.512 Sum_probs=174.0
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCH---HHHhh
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQL---KWVRR 431 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~---~~~r~ 431 (1230)
|+++|++++|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999642 359999999999999999999999999999999999999999999999999987654 34678
Q ss_pred heEEEccCccccch-hHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHh
Q 000909 432 EMGLVSQEHALFGT-SIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAI 508 (1230)
Q Consensus 432 ~i~~v~Q~~~l~~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 508 (1230)
.++|++|++.+|+. |++||+.++.. ..+.++..+ .+.+.++.+ |++........+||||||||++||||+
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 151 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRK-----RVPAALELV--GLSHKHRALPAELSGGEQQRVAIARAI 151 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence 89999999999975 99999987531 112222111 223344444 666556677789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeE
Q 000909 509 IKNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCL 569 (1230)
Q Consensus 509 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i 569 (1230)
+.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999998863 58999999999999976 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=367.68 Aligned_cols=219 Identities=24% Similarity=0.387 Sum_probs=187.4
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhh
Q 000909 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRRE 432 (1230)
Q Consensus 353 ~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~ 432 (1230)
..|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 46999999999973 359999999999999999999999999999999999999999999999999988888888889
Q ss_pred eEEEccCccccc-hhHHHHHhcCCCCC-----CHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHH
Q 000909 433 MGLVSQEHALFG-TSIKDNIMFGKLDA-----TMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIAR 506 (1230)
Q Consensus 433 i~~v~Q~~~l~~-~ti~~Ni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 506 (1230)
++|++|++.+|. .|++||+.++.... ...+ .....+.+.++.+ |++......+.+||||||||++|||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrv~lar 156 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRK----EDEEAVTKAMQAT--GITHLADQSVDTLSGGQRQRAWIAM 156 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCH----HHHHHHHHHHHHc--CCHHHhcCCcccCChHHHHHHHHHH
Confidence 999999998875 59999998753111 0001 0111223344444 6666667788899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 507 AIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 507 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
|++++|+++||||||++||+.+...+.+.|.++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 157 al~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 157 VLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 9999999999999999999999999999998864 37899999999998865 99999999999999999998865
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=363.79 Aligned_cols=220 Identities=29% Similarity=0.427 Sum_probs=183.7
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecC-CCCHH
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDA-----DDGIVRIDGVDIR-RLQLK 427 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~i~-~~~~~ 427 (1230)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4889999999963 4599999999999999999999999999999999999986 5999999999985 44566
Q ss_pred HHhhheEEEccCccccchhHHHHHhcCCCC--CC-HHHHHHHHHHHhHHHHHHh--CCCcccchhcCCCCCCChhHHHHH
Q 000909 428 WVRREMGLVSQEHALFGTSIKDNIMFGKLD--AT-MDEVIAAATAANAHNFIRQ--LPEGYETKVGERGALLSGGQKQRI 502 (1230)
Q Consensus 428 ~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~~-~~~~~~~~~~~~~~~~i~~--l~~g~~t~~~~~g~~LSgGqkqri 502 (1230)
.+|+.++|++|++.+|+.|++||+.++... .. .++..+. +.+.++. +++++.+.....+.+||||||||+
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv 154 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEV-----VERSLRGAALWDEVKDRLKSHAFGLSGGQQQRL 154 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHH-----HHHHHHHcCCchhhhHHhhcCcccCCHHHHHHH
Confidence 788899999999999999999999876321 11 1111111 1111221 222233456677889999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhh
Q 000909 503 AIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 503 ~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 581 (1230)
+||||++.+|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 155 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 234 (249)
T PRK14253 155 CIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSN 234 (249)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 9999999999999999999999999999999999988767999999999999876 999999999999999999888653
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=368.84 Aligned_cols=217 Identities=32% Similarity=0.511 Sum_probs=183.7
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCC--CCHHHHhhh
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRR--LQLKWVRRE 432 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~--~~~~~~r~~ 432 (1230)
|+++|++++|++ .+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 689999999963 2359999999999999999999999999999999999999999999999999853 234567889
Q ss_pred eEEEccCc--cccchhHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHh
Q 000909 433 MGLVSQEH--ALFGTSIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAI 508 (1230)
Q Consensus 433 i~~v~Q~~--~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 508 (1230)
|+|++|++ .+|+.|++||+.++... .+.++..+ .+.+.++.+ |++......+.+||||||||++||||+
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LS~Gq~qrv~laral 152 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEK-----RVKEALKAV--GMEGFENKPPHHLSGGQKKRVAIAGIL 152 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999997 47788999999875321 12222211 123344444 565555667789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 509 IKNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 509 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
+.+|+++||||||++||+.+...+.+.+.++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999998864 48999999999999875 99999999999999999999865
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=376.34 Aligned_cols=200 Identities=26% Similarity=0.417 Sum_probs=173.3
Q ss_pred cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcceEEcccccCCcc-cHH
Q 000909 1007 ALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAG-NIR 1085 (1230)
Q Consensus 1007 ~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~~VpQdp~Lf~g-TIr 1085 (1230)
.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. ....+|++++|+||++.+|.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 469999999999999999999999999999999999999999999999999976 445678999999999999876 999
Q ss_pred HHhccCCC--CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccC
Q 000909 1086 DNIVFGKL--DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATS 1159 (1230)
Q Consensus 1086 eNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~p~ILlLDEaTS 1159 (1230)
||+.+... ..+ ++++.++++..++.+.. .....+||||||||++|||||+++|++|||||||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAA-----------DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------CCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99976321 122 23455566666654432 23345799999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHhhc
Q 000909 1160 ALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1160 aLD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1218 (1230)
+||+.+.+.+.+.|++.. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999875 47999999999999875 899999999999999999999765
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=376.48 Aligned_cols=230 Identities=21% Similarity=0.303 Sum_probs=188.2
Q ss_pred cEEEEEEEEECCCC-CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC----CCCceEEECCeecCCCCHHH
Q 000909 354 EIEFEHVKFSYPSR-PDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD----ADDGIVRIDGVDIRRLQLKW 428 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~-~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~----~~~G~i~~~g~~i~~~~~~~ 428 (1230)
-|+++|++++|+.+ ....+++|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.+||+++.+.+...
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 37899999999632 12469999999999999999999999999999999999986 58999999999998887655
Q ss_pred Hh----hheEEEccCcc--ccc-hhHHHHHhcCCC---C-----CCHHHHHHHHHHHhHHHHHHhCCCccc---chhcCC
Q 000909 429 VR----REMGLVSQEHA--LFG-TSIKDNIMFGKL---D-----ATMDEVIAAATAANAHNFIRQLPEGYE---TKVGER 490 (1230)
Q Consensus 429 ~r----~~i~~v~Q~~~--l~~-~ti~~Ni~~~~~---~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~---t~~~~~ 490 (1230)
++ +.|+||+|+|. +++ .||.+|+..... . ...++. ...+.+.++.+ |++ ......
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~L~~~--gL~~~~~~~~~~ 155 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWR-----KRRAIELLHRV--GIKDHKDAMRSF 155 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHH-----HHHHHHHHHHC--CCCChHHHHhCC
Confidence 43 47999999996 333 489999874210 0 000111 12234556665 654 235677
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCC
Q 000909 491 GALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNG 567 (1230)
Q Consensus 491 g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G 567 (1230)
+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .|.|+|+|||+++.+.. ||+|++|++|
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G 235 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG 235 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 88999999999999999999999999999999999999999999999865 38999999999999976 9999999999
Q ss_pred eEEEecChhHHHhhcCcHHHHHH
Q 000909 568 CLVEIGTHNDLINRIDGHYAKMA 590 (1230)
Q Consensus 568 ~i~~~g~~~~l~~~~~~~~~~~~ 590 (1230)
+|++.|+.+++.+++...|.+.+
T Consensus 236 ~ive~g~~~~i~~~p~~~y~~~l 258 (330)
T PRK15093 236 QTVETAPSKELVTTPHHPYTQAL 258 (330)
T ss_pred EEEEECCHHHHHhCCCCHHHHHH
Confidence 99999999999876556676543
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=366.12 Aligned_cols=221 Identities=25% Similarity=0.409 Sum_probs=186.4
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheE
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 689999999963 45999999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEccCccc-cchhHHHHHhcCCCCCCH-HHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCC
Q 000909 435 LVSQEHAL-FGTSIKDNIMFGKLDATM-DEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNP 512 (1230)
Q Consensus 435 ~v~Q~~~l-~~~ti~~Ni~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 512 (1230)
|++|++.+ +..|++||+.++...... ...........+.+.++.+ |+.......+..||||||||++||||++.+|
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALART--ELSHLADRDMSTLSGGERQRVHVARALAQEP 156 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99999865 457999999886321100 0000000112234455555 6666667788899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 513 VILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 513 ~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
+++||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 157 KLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999998864 47899999999999954 99999999999999999988764
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=365.39 Aligned_cols=225 Identities=24% Similarity=0.370 Sum_probs=186.5
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCee-----cCCCCHHH
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVD-----IRRLQLKW 428 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~-----i~~~~~~~ 428 (1230)
-|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999964 359999999999999999999999999999999999999999999999998 77766543
Q ss_pred ----HhhheEEEccCcc--ccc-hhHHHHHhcCC---CCCCHHHHHHHHHHHhHHHHHHhCCCccc-chhcCCCCCCChh
Q 000909 429 ----VRREMGLVSQEHA--LFG-TSIKDNIMFGK---LDATMDEVIAAATAANAHNFIRQLPEGYE-TKVGERGALLSGG 497 (1230)
Q Consensus 429 ----~r~~i~~v~Q~~~--l~~-~ti~~Ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgG 497 (1230)
+++.++|++|++. ++. .|+.+|+.+.. ......+.. ..+.++++.+ |++ +..++.+.+||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIR-----ATAGDWLERV--EIDAARIDDLPTTFSGG 155 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHH-----HHHHHHHHHc--CCChhHHhCCCccCCHH
Confidence 3567999999984 443 48899986421 011112221 2245667777 554 4678889999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecC
Q 000909 498 QKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGT 574 (1230)
Q Consensus 498 qkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~ 574 (1230)
||||++||||++.+|++|||||||++||+.+.+.+.+.+++.. .|.|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~ 235 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL 235 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998764 38899999999999975 99999999999999999
Q ss_pred hhHHHhhcCcHHHH
Q 000909 575 HNDLINRIDGHYAK 588 (1230)
Q Consensus 575 ~~~l~~~~~~~~~~ 588 (1230)
++++.......|.+
T Consensus 236 ~~~~~~~~~~~~~~ 249 (258)
T PRK11701 236 TDQVLDDPQHPYTQ 249 (258)
T ss_pred HHHHhcCCCCHHHH
Confidence 99987643334443
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=357.80 Aligned_cols=205 Identities=34% Similarity=0.539 Sum_probs=172.1
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHH---HHhh
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLK---WVRR 431 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~---~~r~ 431 (1230)
|+++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 689999999952 24699999999999999999999999999999999999999999999999999877543 4678
Q ss_pred heEEEccCccccc-hhHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHh
Q 000909 432 EMGLVSQEHALFG-TSIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAI 508 (1230)
Q Consensus 432 ~i~~v~Q~~~l~~-~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 508 (1230)
.++|++|++.+|. .|++||+.++... ...++.. ..+.+.++.+ |+.........+||||||||++|||||
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al 152 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQ-----RRVGAALRQV--GLEHKADAFPEQLSGGEQQRVAIARAI 152 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 9999999999986 5999999875211 1111111 1223344444 555445566679999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCe
Q 000909 509 IKNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGC 568 (1230)
Q Consensus 509 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~ 568 (1230)
+.+|+++||||||++||+.+...+.+.+++.. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 153 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 153 VNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999998864 58999999999999976 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=366.46 Aligned_cols=211 Identities=26% Similarity=0.414 Sum_probs=180.3
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCC---CCeEEECCeecCCC-----C
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVE---QGSVRVDGMDVREL-----D 1062 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~idG~di~~i-----~ 1062 (1230)
-|+++||+++|++ .++|+|+||++++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999963 46999999999999999999999999999999999999986 49999999998654 3
Q ss_pred hHHHhhcceEEcccccCCc-ccHHHHhccCCCCC--------------CHHHHHHHHHHhchHHHHHhccccccccccCC
Q 000909 1063 VHWYRKHTALVSQEPVIYA-GNIRDNIVFGKLDA--------------SENEVVEAARAANAHEFISSLKDGYETECGER 1127 (1230)
Q Consensus 1063 ~~~lR~~i~~VpQdp~Lf~-gTIreNl~~g~~~~--------------sd~ei~~al~~a~l~~~i~~lp~gldt~vge~ 1127 (1230)
...+|++++|+||++.+|. .|+++|+.++.... ..+++.++++..++.+.. ...
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFA-----------HQR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHH-----------hCC
Confidence 4567889999999999887 59999998653210 122345555555554433 334
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeCc
Q 000909 1128 GVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIK-KLDSIALVADG 1204 (1230)
Q Consensus 1128 G~~LSgGQrQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~D~I~vl~~G 1204 (1230)
...||||||||++||||++.+|++|||||||++||+++.+.+.+.|++.. +|+|+|++||+++.+. .||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 56799999999999999999999999999999999999999999999875 3799999999999865 58999999999
Q ss_pred EEEEecCHhHH
Q 000909 1205 RVVERGTYAQL 1215 (1230)
Q Consensus 1205 ~Ive~Gt~~eL 1215 (1230)
++++.|+++++
T Consensus 230 ~i~~~g~~~~~ 240 (262)
T PRK09984 230 HVFYDGSSQQF 240 (262)
T ss_pred EEEEeCCHHHh
Confidence 99999999997
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=356.27 Aligned_cols=208 Identities=28% Similarity=0.495 Sum_probs=175.4
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHH---HHhh
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLK---WVRR 431 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~---~~r~ 431 (1230)
|+++|++++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 689999999952 24599999999999999999999999999999999999999999999999999876543 3678
Q ss_pred heEEEccCcccc-chhHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHh
Q 000909 432 EMGLVSQEHALF-GTSIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAI 508 (1230)
Q Consensus 432 ~i~~v~Q~~~l~-~~ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 508 (1230)
.++|++|++.++ +.|++||+.++.. ..+.++..+. +.+.++.+ |++........+||||||||++||||+
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRR-----VSAALDKV--GLLDKAKNFPIQLSGGEQQRVGIARAV 152 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHH-----HHHHHHHc--CChhhhhCCchhCCHHHHHHHHHHHHH
Confidence 999999999875 5699999987531 1222222221 12334444 565556677789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEE
Q 000909 509 IKNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVE 571 (1230)
Q Consensus 509 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~ 571 (1230)
+.+|+++||||||++||+.+.+.+.+.+++.. +++|+|++||+++.+.. ||+|++|++|+++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999998864 47899999999999976 99999999999864
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=361.69 Aligned_cols=214 Identities=24% Similarity=0.436 Sum_probs=170.5
Q ss_pred EEEEEEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc---CCCCeEEECCeecCCCChHHHh
Q 000909 992 IEMRRVDFAYPSRP-DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD---VEQGSVRVDGMDVRELDVHWYR 1067 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~idG~di~~i~~~~lR 1067 (1230)
++|+||+|+|+... .+++|+|+||+|++||++||+||||||||||+++|.|+++ |++|+|.+||.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999997542 3579999999999999999999999999999999999999 99999999999875 34678
Q ss_pred hcceEEcccccCCcc-cHHHHhccCCCCCCHHHHHHHHHHhchHH-HHHhccccccccccCCCCCCChhHHHHHHHHHHH
Q 000909 1068 KHTALVSQEPVIYAG-NIRDNIVFGKLDASENEVVEAARAANAHE-FISSLKDGYETECGERGVQLSGGQRQRIAIARAI 1145 (1230)
Q Consensus 1068 ~~i~~VpQdp~Lf~g-TIreNl~~g~~~~sd~ei~~al~~a~l~~-~i~~lp~gldt~vge~G~~LSgGQrQrlalARAl 1145 (1230)
++++|+||++.+|.+ |++||+.++...........+.+....++ .++.+ +++.........||||||||++||||+
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHH
Confidence 899999999999987 99999986421100000000000001111 22221 233233345678999999999999999
Q ss_pred ccCCCEEEeecccCCcCHHHHHHHHHHHHHhc-CCCeEEEEccCc-hhh-hhcCEEEEEeCcEEEEec
Q 000909 1146 IRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRL-NTI-KKLDSIALVADGRVVERG 1210 (1230)
Q Consensus 1146 l~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~TvI~IaHrl-~ti-~~~D~I~vl~~G~Ive~G 1210 (1230)
+++|++|||||||++||+.+.+.+.+.+++.. +++|+|++||++ +.+ ..||+|++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999864 478999999998 354 568999999999999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-40 Score=363.68 Aligned_cols=220 Identities=30% Similarity=0.472 Sum_probs=182.3
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecCCC--CH
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDA-----DDGIVRIDGVDIRRL--QL 426 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~i~~~--~~ 426 (1230)
-|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4899999999963 4599999999999999999999999999999999999984 899999999998653 33
Q ss_pred HHHhhheEEEccCccccchhHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHHhC--CCcccchhcCCCCCCChhHHHH
Q 000909 427 KWVRREMGLVSQEHALFGTSIKDNIMFGKLD--A-TMDEVIAAATAANAHNFIRQL--PEGYETKVGERGALLSGGQKQR 501 (1230)
Q Consensus 427 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~-~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGqkqr 501 (1230)
..+++.++|++|++.+|+.|++||+.++... . ..++..+. +.+.++.+ .+.++...++.+.+||||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 154 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRI-----VEESLKKAALWDEVKSELNKPGTRLSGGQQQR 154 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHH-----HHHHHHHcCCCchhHHHHhCChhhcCHHHHHH
Confidence 4667899999999999999999999875211 1 11111111 11222222 1111234677888999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 502 IAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 502 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
++||||++.+|+++||||||++||+.+...+.+.|.+..+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 155 ~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14262 155 LCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVE 234 (250)
T ss_pred HHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999999999999987778999999999998755 99999999999999999999876
Q ss_pred h
Q 000909 581 R 581 (1230)
Q Consensus 581 ~ 581 (1230)
.
T Consensus 235 ~ 235 (250)
T PRK14262 235 R 235 (250)
T ss_pred C
Confidence 4
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=362.95 Aligned_cols=220 Identities=29% Similarity=0.404 Sum_probs=183.4
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecCCC--CH
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDA-----DDGIVRIDGVDIRRL--QL 426 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~i~~~--~~ 426 (1230)
.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5899999999963 3599999999999999999999999999999999999885 799999999998653 34
Q ss_pred HHHhhheEEEccCccccchhHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHHhC--CCcccchhcCCCCCCChhHHHH
Q 000909 427 KWVRREMGLVSQEHALFGTSIKDNIMFGKLD--A-TMDEVIAAATAANAHNFIRQL--PEGYETKVGERGALLSGGQKQR 501 (1230)
Q Consensus 427 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~-~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGqkqr 501 (1230)
..+++.++|++|++.+|+.|++||+.++... . +.++..+ .+.+.++.+ .+++.........+||||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 155 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDK-----IVEWALKKAALWDEVKDDLKKSALKLSGGQQQR 155 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHH-----HHHHHHHHcCCchhhhhHhhCCcccCCHHHHHH
Confidence 5678899999999999999999999875321 1 1111111 111222222 1123344567788999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 502 IAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 502 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
++||||++.+|+|+||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 156 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14270 156 LCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFL 235 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999987667999999999999876 99999999999999999999876
Q ss_pred h
Q 000909 581 R 581 (1230)
Q Consensus 581 ~ 581 (1230)
.
T Consensus 236 ~ 236 (251)
T PRK14270 236 E 236 (251)
T ss_pred C
Confidence 4
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-40 Score=364.01 Aligned_cols=225 Identities=31% Similarity=0.438 Sum_probs=183.9
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-----CceEEECCeecCC--CCH
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAD-----DGIVRIDGVDIRR--LQL 426 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~i~~~g~~i~~--~~~ 426 (1230)
-++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 3789999999963 46999999999999999999999999999999999999874 8999999999875 344
Q ss_pred HHHhhheEEEccCccccch-hHHHHHhcCCC--CC-CHHHHHHHHHHHhHHHHHHhC--CCcccchhcCCCCCCChhHHH
Q 000909 427 KWVRREMGLVSQEHALFGT-SIKDNIMFGKL--DA-TMDEVIAAATAANAHNFIRQL--PEGYETKVGERGALLSGGQKQ 500 (1230)
Q Consensus 427 ~~~r~~i~~v~Q~~~l~~~-ti~~Ni~~~~~--~~-~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGqkq 500 (1230)
..+|+.++|++|++.+|.. |++||+.++.. .. ..++..+.+. +.+..+ ..++.......+.+|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 155 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAE-----RSLRGAALWDEVKDRLKTPATGLSGGQQQ 155 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHH-----HHHHHcCcchhhhhhhcCCcccCCHHHHH
Confidence 5678899999999999875 99999986432 11 2222222211 112222 112223345667889999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHH
Q 000909 501 RIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLI 579 (1230)
Q Consensus 501 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 579 (1230)
|++||||++++|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 156 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 156 RLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987668999999999999976 9999999999999999999987
Q ss_pred hhcCcHH
Q 000909 580 NRIDGHY 586 (1230)
Q Consensus 580 ~~~~~~~ 586 (1230)
..+...+
T Consensus 236 ~~~~~~~ 242 (252)
T PRK14272 236 TNPRDER 242 (252)
T ss_pred hCcCcHH
Confidence 6433333
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=357.64 Aligned_cols=205 Identities=24% Similarity=0.454 Sum_probs=175.6
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheE
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. .+++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 578999999963 459999999999999999999999999999999999999999999999988753 4577899
Q ss_pred EEccCccccch-hHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccC
Q 000909 435 LVSQEHALFGT-SIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKN 511 (1230)
Q Consensus 435 ~v~Q~~~l~~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 511 (1230)
|++|++.++.+ |++||+.++.. .....+. ...+.+.++.+ |++........+||||||||++||||++.+
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEA-----RRRIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHH-----HHHHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 99999999875 99999986421 1111111 12334556666 777777788889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEec
Q 000909 512 PVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIG 573 (1230)
Q Consensus 512 ~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 573 (1230)
|+++||||||++||+.+.+.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999998764 57899999999999865 9999999999998764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=343.21 Aligned_cols=172 Identities=40% Similarity=0.671 Sum_probs=161.5
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheE
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
|+++|++++|++. +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...++++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 5789999999742 245999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCCCE
Q 000909 435 LVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVI 514 (1230)
Q Consensus 435 ~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~i 514 (1230)
|++|++.+|+.|++||+ ||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999997 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhccCEEEEEeCCeE
Q 000909 515 LLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRNADLIAVVDNGCL 569 (1230)
Q Consensus 515 lllDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~i 569 (1230)
+||||||++||+.+...+.+.+++.. +|+|+|++||+++.+..||++++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999998864 48999999999999988999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=380.37 Aligned_cols=235 Identities=30% Similarity=0.421 Sum_probs=191.7
Q ss_pred ccEEEEEEEEECCCC--------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCee--cC
Q 000909 353 GEIEFEHVKFSYPSR--------PDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVD--IR 422 (1230)
Q Consensus 353 ~~i~~~~v~~~y~~~--------~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~--i~ 422 (1230)
.-++++|+++.|..+ ....+++||||++++||++||||+||||||||.++|+|+.+|++|+|.++|.+ ++
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~ 358 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT 358 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence 357899999999742 12468999999999999999999999999999999999999999999999987 23
Q ss_pred CCCHHHHhhheEEEccCcc--ccc-hhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccc-hhcCCCCCCChhH
Q 000909 423 RLQLKWVRREMGLVSQEHA--LFG-TSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYET-KVGERGALLSGGQ 498 (1230)
Q Consensus 423 ~~~~~~~r~~i~~v~Q~~~--l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~~LSgGq 498 (1230)
.-+....|+++-+|+|||+ |-+ .||+++|.-......... .+.+.+.+.+.++.. |+.. ..+..+.+|||||
T Consensus 359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~--~~~~~~rv~~ll~~V--gL~~~~l~ryP~elSGGQ 434 (539)
T COG1123 359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGS--GAERRARVAELLELV--GLPPEFLDRYPHELSGGQ 434 (539)
T ss_pred cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccc--hHHHHHHHHHHHHHc--CCCHHHHhcCchhcCcch
Confidence 2235567889999999996 443 499999974321000000 112222333334433 5554 5788999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecCh
Q 000909 499 KQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTH 575 (1230)
Q Consensus 499 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~ 575 (1230)
||||||||||..+|+++|+|||||+||+-+...+.+.|+++. .|.|.|+|||+++.++. ||||.||++|+|||.|+.
T Consensus 435 rQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~ 514 (539)
T COG1123 435 RQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPT 514 (539)
T ss_pred hHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCH
Confidence 999999999999999999999999999999999999998864 48999999999999988 999999999999999999
Q ss_pred hHHHhhcCcHHHHHHH
Q 000909 576 NDLINRIDGHYAKMAK 591 (1230)
Q Consensus 576 ~~l~~~~~~~~~~~~~ 591 (1230)
+++.+++...|.+...
T Consensus 515 ~~v~~~p~h~Ytr~L~ 530 (539)
T COG1123 515 EKVFENPQHPYTRKLL 530 (539)
T ss_pred HHHhcCCCChHHHHHH
Confidence 9999887888876543
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=365.62 Aligned_cols=219 Identities=29% Similarity=0.443 Sum_probs=182.9
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecCC--CC
Q 000909 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDA-----DDGIVRIDGVDIRR--LQ 425 (1230)
Q Consensus 353 ~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~i~~--~~ 425 (1230)
+.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 36999999999963 3599999999999999999999999999999999999985 48999999999864 34
Q ss_pred HHHHhhheEEEccCccccchhHHHHHhcCCCC---CCHH----HHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhH
Q 000909 426 LKWVRREMGLVSQEHALFGTSIKDNIMFGKLD---ATMD----EVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQ 498 (1230)
Q Consensus 426 ~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~---~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 498 (1230)
...++++++|++|++.+|+.|++||+.++... .... .+.++++..++.+ ++....+..+.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQ-------EVKDKLNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcc-------hhhhHhcCCcccCCHHH
Confidence 56678899999999999999999999875211 1111 1222222222211 12234567778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEe-----CCeEEEe
Q 000909 499 KQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVD-----NGCLVEI 572 (1230)
Q Consensus 499 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~-----~G~i~~~ 572 (1230)
|||++||||++++|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|+ +|++++.
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 99999999999999999999999999999999999999987767999999999999876 99999998 5999999
Q ss_pred cChhHHHhh
Q 000909 573 GTHNDLINR 581 (1230)
Q Consensus 573 g~~~~l~~~ 581 (1230)
|+++++.+.
T Consensus 236 ~~~~~~~~~ 244 (259)
T PRK14260 236 GVTTQIFSN 244 (259)
T ss_pred CCHHHHhcC
Confidence 999998754
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=365.42 Aligned_cols=221 Identities=24% Similarity=0.397 Sum_probs=186.8
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC--------CceEEECCeecCCCCH
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAD--------DGIVRIDGVDIRRLQL 426 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~--------~G~i~~~g~~i~~~~~ 426 (1230)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 689999999963 35999999999999999999999999999999999999998 9999999999988887
Q ss_pred HHHhhheEEEccCcc-ccchhHHHHHhcCCCCC-CHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHH
Q 000909 427 KWVRREMGLVSQEHA-LFGTSIKDNIMFGKLDA-TMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAI 504 (1230)
Q Consensus 427 ~~~r~~i~~v~Q~~~-l~~~ti~~Ni~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~i 504 (1230)
..+++.++|++|++. +|..|++||+.++.... .............+.+.++.+ |+++..+....+||||||||++|
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~l 156 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA--GATALVGRDVTTLSGGELARVQF 156 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHH
Confidence 788888999999986 56789999998763211 000000000112233455555 78888888899999999999999
Q ss_pred HHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhc-cCEEEEEeCCeEEEe
Q 000909 505 ARAII---------KNPVILLLDEATSALDSESETLVQNALDQASL--GRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEI 572 (1230)
Q Consensus 505 ARal~---------~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~ 572 (1230)
||||+ .+|++|||||||++||+.+.+.+.+.+++..+ ++|+|+|||+++.+.. ||++++|++|++++.
T Consensus 157 aral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~ 236 (272)
T PRK13547 157 ARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAH 236 (272)
T ss_pred HHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEe
Confidence 99999 59999999999999999999999999988643 7999999999999865 999999999999999
Q ss_pred cChhHHHh
Q 000909 573 GTHNDLIN 580 (1230)
Q Consensus 573 g~~~~l~~ 580 (1230)
|+++++.+
T Consensus 237 g~~~~~~~ 244 (272)
T PRK13547 237 GAPADVLT 244 (272)
T ss_pred cCHHHHcC
Confidence 99998865
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=358.49 Aligned_cols=212 Identities=30% Similarity=0.430 Sum_probs=177.8
Q ss_pred cEEEEEEEEECCCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHH---H
Q 000909 354 EIEFEHVKFSYPSRPD-SIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKW---V 429 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~-~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~---~ 429 (1230)
-|+++|++++|++... .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999974221 25899999999999999999999999999999999999999999999999998876543 2
Q ss_pred -hhheEEEccCccccch-hHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHH
Q 000909 430 -RREMGLVSQEHALFGT-SIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIA 505 (1230)
Q Consensus 430 -r~~i~~v~Q~~~l~~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iA 505 (1230)
++.++|++|++.++.. |++||+.++.. .....+. ...+.+.++.+ |++........+||||||||++||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrl~la 158 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQS-----RNGAKALLEQL--GLGKRLDHLPAQLSGGEQQRVALA 158 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHH
Confidence 3579999999999875 99999986421 1111111 12233455555 666556677789999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhccCEEEEEeCCeEEEe
Q 000909 506 RAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRNADLIAVVDNGCLVEI 572 (1230)
Q Consensus 506 Ral~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~ 572 (1230)
|||+.+|+++||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+..||++++|++|++++.
T Consensus 159 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 159 RAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999998863 37899999999999888999999999999864
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=367.26 Aligned_cols=226 Identities=27% Similarity=0.440 Sum_probs=186.1
Q ss_pred EEEEEEEEECCCC------CCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCCh--
Q 000909 992 IEMRRVDFAYPSR------PDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDV-- 1063 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~------~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~-- 1063 (1230)
|+++||+++|+.. .++++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+++.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 8999999999631 03469999999999999999999999999999999999999999999999999988765
Q ss_pred -HHHhhcceEEccccc--CC-cccHHHHhccCCC---CCCHHHHHHHHHHhchHHHHHhccccccc-cccCCCCCCChhH
Q 000909 1064 -HWYRKHTALVSQEPV--IY-AGNIRDNIVFGKL---DASENEVVEAARAANAHEFISSLKDGYET-ECGERGVQLSGGQ 1135 (1230)
Q Consensus 1064 -~~lR~~i~~VpQdp~--Lf-~gTIreNl~~g~~---~~sd~ei~~al~~a~l~~~i~~lp~gldt-~vge~G~~LSgGQ 1135 (1230)
..+|+.++|+||++. ++ ..|+++|+.+... +.+.+ .....+.+.++.+ |+++ ........|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~-----~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge 156 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKA-----ERLARASEMLRAV--DLDDSVLDKRPPQLSGGQ 156 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHH-----HHHHHHHHHHHHc--CCChhHhhCCCccCChHH
Confidence 357889999999983 43 4699999864210 11111 1112234444443 4543 3456677899999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCH
Q 000909 1136 RQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTY 1212 (1230)
Q Consensus 1136 rQrlalARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~ 1212 (1230)
|||++|||||+++|+||||||||++||+++...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~ 236 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPV 236 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCCh
Confidence 9999999999999999999999999999999999999998753 7899999999999975 799999999999999999
Q ss_pred hHHhhcccccHH
Q 000909 1213 AQLTHMRGAFFN 1224 (1230)
Q Consensus 1213 ~eLl~~~g~y~~ 1224 (1230)
+++...++.|..
T Consensus 237 ~~~~~~~~~~~~ 248 (268)
T PRK10419 237 GDKLTFSSPAGR 248 (268)
T ss_pred hhccCCCCHHHH
Confidence 999876665543
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=354.95 Aligned_cols=210 Identities=30% Similarity=0.417 Sum_probs=183.7
Q ss_pred EEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCH----HHHhh
Q 000909 356 EFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQL----KWVRR 431 (1230)
Q Consensus 356 ~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~----~~~r~ 431 (1230)
.+.|+.|+|+.+ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 568999999743 469999999999999999999999999999999999999999999999998876542 34567
Q ss_pred heEEEccCccccchhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccC
Q 000909 432 EMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKN 511 (1230)
Q Consensus 432 ~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 511 (1230)
.++|++|++.+|+.|++||+.++.+ ...++..++++..++.+.+..+|.|+++.++....+||||||||++||||++.+
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 8999999999998899999998643 234455667777777778888999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHH--HHHHhc-CCCeEEEEecCchhhhccCEEEEEeCCe
Q 000909 512 PVILLLDEATSALDSESETLVQN--ALDQAS-LGRTTLVVAHKLSTVRNADLIAVVDNGC 568 (1230)
Q Consensus 512 ~~illlDE~ts~lD~~~~~~i~~--~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~ 568 (1230)
|+++||||||++||+.+...+.+ .++... .++|+|++||+++.+..||++++|++|.
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999888877 454443 4789999999999998899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=364.16 Aligned_cols=224 Identities=23% Similarity=0.337 Sum_probs=184.1
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC----CCCeEEECCeecCCCChHHH
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDV----EQGSVRVDGMDVRELDVHWY 1066 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p----~~G~I~idG~di~~i~~~~l 1066 (1230)
.|+++||+++| + .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.+++.. +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 48999999999 2 2599999999999999999999999999999999999999 999999999998632 223
Q ss_pred hhcceEEccccc-CCc--ccHHHHhccC----CCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHH
Q 000909 1067 RKHTALVSQEPV-IYA--GNIRDNIVFG----KLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRI 1139 (1230)
Q Consensus 1067 R~~i~~VpQdp~-Lf~--gTIreNl~~g----~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 1139 (1230)
++.++||||+|. .|. .|+.+|+.+. .....+++++++++..++.++ ++.++.....||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHH
Confidence 467999999985 343 4888886431 112334566777777766432 1233455678999999999
Q ss_pred HHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhHHh
Q 000909 1140 AIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQLT 1216 (1230)
Q Consensus 1140 alARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eLl 1216 (1230)
+|||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999998743 789999999999986 48999999999999999999998
Q ss_pred hcc-c-ccHHHhhh
Q 000909 1217 HMR-G-AFFNLATL 1228 (1230)
Q Consensus 1217 ~~~-g-~y~~l~~~ 1228 (1230)
+.. . .++.++..
T Consensus 230 ~~~~~~~~~~~~~~ 243 (254)
T PRK10418 230 NAPKHAVTRSLVSA 243 (254)
T ss_pred hCCCCHHHHHHHHh
Confidence 763 2 23435543
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=358.27 Aligned_cols=202 Identities=30% Similarity=0.495 Sum_probs=169.0
Q ss_pred EEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheEE
Q 000909 356 EFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGL 435 (1230)
Q Consensus 356 ~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~~ 435 (1230)
+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .++++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999963 35999999999999999999999999999999999999999999999998764 46778999
Q ss_pred EccCccc---cchhHHHHHhcCCCCC------CHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHH
Q 000909 436 VSQEHAL---FGTSIKDNIMFGKLDA------TMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIAR 506 (1230)
Q Consensus 436 v~Q~~~l---~~~ti~~Ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iAR 506 (1230)
++|++.+ ++.|++||+.++.... ..++. ...+.+.++.+ |++........+||||||||++|||
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 145 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKAD-----KAKVDEALERV--GLSELADRQIGELSGGQQQRVLLAR 145 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHH-----HHHHHHHHHHc--CCHHHHhCCcccCCHHHHHHHHHHH
Confidence 9999876 5679999998764311 00111 11233445555 6665566777899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEec
Q 000909 507 AIIKNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIG 573 (1230)
Q Consensus 507 al~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 573 (1230)
||+.+|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++| +++.|
T Consensus 146 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 146 ALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999998864 68999999999999866 9999999886 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=355.53 Aligned_cols=205 Identities=35% Similarity=0.547 Sum_probs=175.5
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCC--CCHHHHhhh
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRR--LQLKWVRRE 432 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~--~~~~~~r~~ 432 (1230)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 478999999964 359999999999999999999999999999999999999999999999999853 345567889
Q ss_pred eEEEccCccccc-hhHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHh
Q 000909 433 MGLVSQEHALFG-TSIKDNIMFGKL---DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAI 508 (1230)
Q Consensus 433 i~~v~Q~~~l~~-~ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 508 (1230)
++|++|++.+|. .|++||+.++.. ....++.. ..+.+.++.+ |++..+.....+||||||||++||||+
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAE-----ERALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 999999999986 599999987531 11222211 1233455665 777777888899999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeE
Q 000909 509 IKNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCL 569 (1230)
Q Consensus 509 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i 569 (1230)
+.+|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999864 47999999999999965 999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=334.57 Aligned_cols=222 Identities=28% Similarity=0.423 Sum_probs=186.5
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHH-Hhhc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW-YRKH 1069 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~-lR~~ 1069 (1230)
-++++||+..|.. .++|++|||++++||.|+++||||+||||++++|+|+.+|.+|+|.++|.||...+++. .|..
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 3789999999963 46999999999999999999999999999999999999999999999999999998865 4778
Q ss_pred ceEEcccccCCcc-cHHHHhccCCCCCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHccC
Q 000909 1070 TALVSQEPVIYAG-NIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRN 1148 (1230)
Q Consensus 1070 i~~VpQdp~Lf~g-TIreNl~~g~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll~~ 1148 (1230)
|+||||...+|.. ||.|||.+|.....+++-++ ..+++.-+-+|. +.......+.+|||||+|-+||||||+.+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~----~~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQE----RDLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhccccccccc----ccHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 9999999999975 99999987632211111111 001122222342 33444567889999999999999999999
Q ss_pred CCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhHHhhccc
Q 000909 1149 PTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQLTHMRG 1220 (1230)
Q Consensus 1149 p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eLl~~~g 1220 (1230)
|++|+|||||.+|-|.--+.|.++|+++.+ +.||+.|-++..... -+||.+||++|+|+.+|+.+||.+++.
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~ 229 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHH
Confidence 999999999999999999999999999874 569999999999875 579999999999999999999998754
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=367.31 Aligned_cols=221 Identities=27% Similarity=0.410 Sum_probs=182.5
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCeecCCC--C
Q 000909 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD-----ADDGIVRIDGVDIRRL--Q 425 (1230)
Q Consensus 353 ~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~i~~~--~ 425 (1230)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||.++... +
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 45899999999963 359999999999999999999999999999999999864 4999999999998643 3
Q ss_pred HHHHhhheEEEccCccccchhHHHHHhcCCC--CC-CHHHHHHHHHHHhHHHHHHhC--CCcccchhcCCCCCCChhHHH
Q 000909 426 LKWVRREMGLVSQEHALFGTSIKDNIMFGKL--DA-TMDEVIAAATAANAHNFIRQL--PEGYETKVGERGALLSGGQKQ 500 (1230)
Q Consensus 426 ~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~--~~-~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGqkq 500 (1230)
...+|++++|++|++.+|+.|++||+.++.. .. +..+..+. +.+.++.+ .+++.......+..|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q 189 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEI-----VEKSLRKAALWDEVSDRLDKNALGLSGGQQQ 189 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHH-----HHHHHHHhCCccchhhHhhCChhhCCHHHHH
Confidence 3457889999999999998899999997632 11 11111111 11222222 111233456778899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHH
Q 000909 501 RIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLI 579 (1230)
Q Consensus 501 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 579 (1230)
|++|||||+.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 190 rv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 190 RLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999865 9999999999999999999987
Q ss_pred hh
Q 000909 580 NR 581 (1230)
Q Consensus 580 ~~ 581 (1230)
++
T Consensus 270 ~~ 271 (286)
T PRK14275 270 TN 271 (286)
T ss_pred hC
Confidence 64
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=362.26 Aligned_cols=221 Identities=31% Similarity=0.468 Sum_probs=184.1
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCeecCCC--CH
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD-----ADDGIVRIDGVDIRRL--QL 426 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~i~~~--~~ 426 (1230)
.++++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||.++... +.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999963 459999999999999999999999999999999999874 4899999999998753 45
Q ss_pred HHHhhheEEEccCccccchhHHHHHhcCCC--CC-CHH----HHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHH
Q 000909 427 KWVRREMGLVSQEHALFGTSIKDNIMFGKL--DA-TMD----EVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQK 499 (1230)
Q Consensus 427 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~--~~-~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 499 (1230)
..++++++|+||++.+|+.|++||+.++.. .. +.+ ++.++++..++.+++ ....++.+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEV-------KDKLDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhH-------HHHHhCCcccCCHHHH
Confidence 677889999999999999999999987531 11 111 122233333332222 2234677889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHH
Q 000909 500 QRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDL 578 (1230)
Q Consensus 500 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 578 (1230)
||++||||++++|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987778999999999999876 999999999999999999998
Q ss_pred HhhcCc
Q 000909 579 INRIDG 584 (1230)
Q Consensus 579 ~~~~~~ 584 (1230)
...+..
T Consensus 233 ~~~~~~ 238 (250)
T PRK14266 233 FINPKD 238 (250)
T ss_pred HhCCCC
Confidence 754333
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=358.76 Aligned_cols=215 Identities=34% Similarity=0.505 Sum_probs=183.7
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheE
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
|+++|++++|++ +++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 578999999973 359999999999999999999999999999999999999999999999999876543 467899
Q ss_pred EEccCccccch-hHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccC
Q 000909 435 LVSQEHALFGT-SIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKN 511 (1230)
Q Consensus 435 ~v~Q~~~l~~~-ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 511 (1230)
|+||++.+|++ |++||+.++... .+..+. ...+.+.++.+ |+.........+|||||+||++||||++++
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKI-----KARVEELLELV--QLEGLGDRYPNQLSGGQRQRVALARALAVE 148 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHH-----HHHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999975 999999875421 111111 12234556666 555556667789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhh
Q 000909 512 PVILLLDEATSALDSESETLVQNALDQASL--GRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 512 ~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 581 (1230)
|+++||||||++||+++++.+.+.+.+..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 149 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 149 PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999987643 7999999999999866 999999999999999999998753
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-40 Score=367.86 Aligned_cols=218 Identities=28% Similarity=0.497 Sum_probs=184.0
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhhe
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREM 433 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i 433 (1230)
.++++|++++|+. ++.+|+||||+|++||++|++||||||||||+|+|+|+..|++|+|.++|.+...- ....+++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4788999999973 24699999999999999999999999999999999999999999999999998765 67788999
Q ss_pred EEEccCccccch-hHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhcc
Q 000909 434 GLVSQEHALFGT-SIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIK 510 (1230)
Q Consensus 434 ~~v~Q~~~l~~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 510 (1230)
||+||+|.+++. |++||+.|... ....+. ....+.+.++.+ |++.....+..+||+|||||++||+||+.
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~-----~~~~~~~~l~~~--~L~~~~~~~~~~lS~G~kqrl~ia~aL~~ 153 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEE-----AEERIEELLELF--GLEDKANKKVRTLSGGMKQRLSIALALLH 153 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhH-----HHHHHHHHHHHc--CCchhhCcchhhcCHHHHHHHHHHHHHhc
Confidence 999999998876 99999986321 011011 111222334444 55543356678899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-C-CeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhh
Q 000909 511 NPVILLLDEATSALDSESETLVQNALDQASL-G-RTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 511 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~~-~-~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 581 (1230)
+|++|||||||++|||.+...+.+.|+++.+ | +||+++||.++.+.. ||+|++|++|+++..|+.+++...
T Consensus 154 ~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 154 DPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999998754 5 799999999999987 999999999999999999987653
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=330.23 Aligned_cols=223 Identities=25% Similarity=0.432 Sum_probs=192.9
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHH-Hhh
Q 000909 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKW-VRR 431 (1230)
Q Consensus 353 ~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~-~r~ 431 (1230)
+.+..+|+.++|.. ++|.+||||++++||+|++.||||+||||.+.++.|+.+|++|+|.+||.||+.++... -|-
T Consensus 3 ~~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArl 79 (243)
T COG1137 3 STLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79 (243)
T ss_pred cEEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhc
Confidence 35788999999974 46999999999999999999999999999999999999999999999999999999765 456
Q ss_pred heEEEccCccccch-hHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhcc
Q 000909 432 EMGLVSQEHALFGT-SIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIK 510 (1230)
Q Consensus 432 ~i~~v~Q~~~l~~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~ 510 (1230)
.|||+||||.+|.+ ||+|||..-.+ ..........++..+++.++.+ .+.......+..||||||.|+.|||||..
T Consensus 80 GigYLpQE~SIFr~LtV~dNi~~vlE-~~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~ 156 (243)
T COG1137 80 GIGYLPQEASIFRKLTVEDNIMAVLE-IREKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAA 156 (243)
T ss_pred CcccccccchHhhcCcHHHHHHHHHh-hhhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhc
Confidence 89999999999976 99999985432 1111222233444455566666 78888899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchh-hhccCEEEEEeCCeEEEecChhHHHhh
Q 000909 511 NPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLST-VRNADLIAVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 511 ~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~~~~d~i~~l~~G~i~~~g~~~~l~~~ 581 (1230)
+|+.++||||++++||.+-..|++.++.+. +|--|++.-|+..+ +.-|||.+++.+|++..+|+++|+.++
T Consensus 157 ~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 157 NPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred CCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 999999999999999999999999998865 57889999999865 566999999999999999999999874
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=363.94 Aligned_cols=220 Identities=30% Similarity=0.427 Sum_probs=184.7
Q ss_pred cccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecCC---
Q 000909 352 RGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDA-----DDGIVRIDGVDIRR--- 423 (1230)
Q Consensus 352 ~~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~i~~--- 423 (1230)
.+.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 457999999999973 3599999999999999999999999999999999999985 79999999988742
Q ss_pred -CCHHHHhhheEEEccCccccchhHHHHHhcCCC--CCCH-----HHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCC
Q 000909 424 -LQLKWVRREMGLVSQEHALFGTSIKDNIMFGKL--DATM-----DEVIAAATAANAHNFIRQLPEGYETKVGERGALLS 495 (1230)
Q Consensus 424 -~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~--~~~~-----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 495 (1230)
.+...+++.++|++|++.+|.+|++||+.++.. .... +++.++++.++ +.+++.+..++...+||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~l~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAA-------LWDEVKDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcC-------CchhhhHHHhCCcccCC
Confidence 344567889999999999998999999987521 1111 12222222221 11234456677888999
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecC
Q 000909 496 GGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGT 574 (1230)
Q Consensus 496 gGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~ 574 (1230)
||||||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999987767899999999999965 99999999999999999
Q ss_pred hhHHHhh
Q 000909 575 HNDLINR 581 (1230)
Q Consensus 575 ~~~l~~~ 581 (1230)
++++...
T Consensus 244 ~~~~~~~ 250 (265)
T PRK14252 244 TDTIFIK 250 (265)
T ss_pred HHHHHhC
Confidence 9998753
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=362.81 Aligned_cols=220 Identities=30% Similarity=0.453 Sum_probs=182.1
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecCC--CCH
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDA-----DDGIVRIDGVDIRR--LQL 426 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~i~~--~~~ 426 (1230)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999963 3599999999999999999999999999999999999974 69999999999853 345
Q ss_pred HHHhhheEEEccCccccc-hhHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHHhC--CCcccchhcCCCCCCChhHHH
Q 000909 427 KWVRREMGLVSQEHALFG-TSIKDNIMFGKLD---ATMDEVIAAATAANAHNFIRQL--PEGYETKVGERGALLSGGQKQ 500 (1230)
Q Consensus 427 ~~~r~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGqkq 500 (1230)
..+++.++|++|++.+|. .|++||+.++... ...++..+ .+.+.++.+ +.++.......+.+|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 155 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDE-----LVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQ 155 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHH-----HHHHHHHHcCCchhhhhHhhCCcccCCHHHHH
Confidence 567889999999999987 4999999865211 11111111 122233333 111234567778899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEe------CCeEEEec
Q 000909 501 RIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVD------NGCLVEIG 573 (1230)
Q Consensus 501 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~------~G~i~~~g 573 (1230)
|++||||++.+|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|+ +|++++.|
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~ 235 (258)
T PRK14241 156 RLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEID 235 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecC
Confidence 999999999999999999999999999999999999987667999999999999865 99999997 89999999
Q ss_pred ChhHHHhh
Q 000909 574 THNDLINR 581 (1230)
Q Consensus 574 ~~~~l~~~ 581 (1230)
+++++...
T Consensus 236 ~~~~~~~~ 243 (258)
T PRK14241 236 DTEKIFSN 243 (258)
T ss_pred CHHHHHhC
Confidence 99998753
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=365.15 Aligned_cols=220 Identities=27% Similarity=0.439 Sum_probs=182.6
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEECCeecCC--CC
Q 000909 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD-----ADDGIVRIDGVDIRR--LQ 425 (1230)
Q Consensus 353 ~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~i~~--~~ 425 (1230)
..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 45899999999963 359999999999999999999999999999999999997 689999999999864 34
Q ss_pred HHHHhhheEEEccCccccchhHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhC--CCcccchhcCCCCCCChhHHHH
Q 000909 426 LKWVRREMGLVSQEHALFGTSIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQL--PEGYETKVGERGALLSGGQKQR 501 (1230)
Q Consensus 426 ~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGqkqr 501 (1230)
...++++++|++|++.+|+.|++||+.++... ... +.. ..+.+.++.+ ...+....++++.+||||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~-~~~-----~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDG-DID-----ERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQR 188 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcH-HHH-----HHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHH
Confidence 55678899999999999988999999875211 111 111 1122333333 1112234677788999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEE-EEeCCeEEEecChhHHH
Q 000909 502 IAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIA-VVDNGCLVEIGTHNDLI 579 (1230)
Q Consensus 502 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~-~l~~G~i~~~g~~~~l~ 579 (1230)
++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+++ +|++|++++.|+++++.
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999988666899999999999876 99975 57999999999999886
Q ss_pred hh
Q 000909 580 NR 581 (1230)
Q Consensus 580 ~~ 581 (1230)
.+
T Consensus 269 ~~ 270 (285)
T PRK14254 269 EN 270 (285)
T ss_pred hC
Confidence 54
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=377.01 Aligned_cols=211 Identities=26% Similarity=0.411 Sum_probs=181.0
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCC----CHHHHh
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRL----QLKWVR 430 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~----~~~~~r 430 (1230)
|++ |++++|++ . .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +....+
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 99999963 2 23 89999999999999999999999999999999999999999999998653 234467
Q ss_pred hheEEEccCccccc-hhHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhc
Q 000909 431 REMGLVSQEHALFG-TSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAII 509 (1230)
Q Consensus 431 ~~i~~v~Q~~~l~~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~ 509 (1230)
++++||+|++.+|+ .|++||+.++......++ +.+.++.+ |++........+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~---------~~~~l~~~--gl~~~~~~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQ---------FDKIVALL--GIEPLLDRYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHH---------HHHHHHHc--CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 89999999999996 499999998743221222 23445555 6766677788899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhhc
Q 000909 510 KNPVILLLDEATSALDSESETLVQNALDQASL--GRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRI 582 (1230)
Q Consensus 510 ~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 582 (1230)
.+|+++|||||||+||+.+++.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 99999999999999999999999999987643 7899999999998866 9999999999999999999998753
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=365.97 Aligned_cols=214 Identities=30% Similarity=0.504 Sum_probs=188.2
Q ss_pred cEEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcc
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i 1070 (1230)
.|+++||+.+|.. +..+|+||||+|++||.+|++||||||||||+++|+|+..|++|+|.++|.|...- ...+|+++
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4788999999962 24699999999999999999999999999999999999999999999999998765 77889999
Q ss_pred eEEcccccCCcc-cHHHHhccC-----CC-CCCHHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHH
Q 000909 1071 ALVSQEPVIYAG-NIRDNIVFG-----KL-DASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIAR 1143 (1230)
Q Consensus 1071 ~~VpQdp~Lf~g-TIreNl~~g-----~~-~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalAR 1143 (1230)
|||||+|.++.. |++|||.|. .+ ...++.+.+.++..++.+.- ......||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHH
Confidence 999999998875 999999863 22 12345677888888876521 2234579999999999999
Q ss_pred HHccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC-C-CeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHhhc
Q 000909 1144 AIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM-G-RTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1144 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~-~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~ 1218 (1230)
||+.+|++|||||||++||+.+...+.+.|+++.+ + +||++.||.++.+.. ||+|++|++|+++..|+++++...
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999999865 4 799999999999987 899999999999999999998765
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=378.30 Aligned_cols=208 Identities=25% Similarity=0.401 Sum_probs=177.6
Q ss_pred EEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCC----hHHHhhcce
Q 000909 996 RVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELD----VHWYRKHTA 1071 (1230)
Q Consensus 996 ~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~----~~~lR~~i~ 1071 (1230)
|++++|++ .. + |+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+ ...+|++++
T Consensus 4 ~l~~~~~~---~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 89999963 23 4 999999999999999999999999999999999999999999999987542 345788999
Q ss_pred EEcccccCCcc-cHHHHhccCCCCCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHHHc
Q 000909 1072 LVSQEPVIYAG-NIRDNIVFGKLDAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAII 1146 (1230)
Q Consensus 1072 ~VpQdp~Lf~g-TIreNl~~g~~~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARAll 1146 (1230)
||||++.+|.. |++||+.++..... ++++.+.++..++.++ ......+||||||||++|||||+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHL-----------LGRLPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHH
Confidence 99999999975 99999987643222 1234555555555443 33445689999999999999999
Q ss_pred cCCCEEEeecccCCcCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCcEEEEecCHhHHhhcc
Q 000909 1147 RNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTHMR 1219 (1230)
Q Consensus 1147 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eLl~~~ 1219 (1230)
++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..+.
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 99999999999999999999999999998753 7899999999999865 7999999999999999999998764
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-40 Score=357.53 Aligned_cols=214 Identities=23% Similarity=0.374 Sum_probs=174.0
Q ss_pred EEEEEEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC---CCCceEEECCeecCCCCHHHHh
Q 000909 355 IEFEHVKFSYPSRP-DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD---ADDGIVRIDGVDIRRLQLKWVR 430 (1230)
Q Consensus 355 i~~~~v~~~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~---~~~G~i~~~g~~i~~~~~~~~r 430 (1230)
++++||+|+|++.+ .+++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999997542 3579999999999999999999999999999999999999 99999999999875 34678
Q ss_pred hheEEEccCccccch-hHHHHHhcCCCCCCHHHHHHHHHHHhHHH-HHHhCCCcccchhcCCCCCCChhHHHHHHHHHHh
Q 000909 431 REMGLVSQEHALFGT-SIKDNIMFGKLDATMDEVIAAATAANAHN-FIRQLPEGYETKVGERGALLSGGQKQRIAIARAI 508 (1230)
Q Consensus 431 ~~i~~v~Q~~~l~~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal 508 (1230)
+.++|++|++.+|++ |++||+.++..........+........+ .++.+ |++....+...+||||||||++||||+
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHH
Confidence 899999999999987 99999987521110000001111111122 34333 555555667789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCc-hhh-hccCEEEEEeCCeEEEec
Q 000909 509 IKNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKL-STV-RNADLIAVVDNGCLVEIG 573 (1230)
Q Consensus 509 ~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l-~~~-~~~d~i~~l~~G~i~~~g 573 (1230)
+++|+++||||||++||+.+...+.+.+++.. +++|+|++||++ +.+ ..||+|++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998764 478999999998 455 559999999999999875
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=354.96 Aligned_cols=204 Identities=29% Similarity=0.450 Sum_probs=174.5
Q ss_pred EEEEEEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChH---HHh
Q 000909 992 IEMRRVDFAYPSRP-DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVH---WYR 1067 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~lR 1067 (1230)
++++||+++|++.. +.++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996321 24699999999999999999999999999999999999999999999999999877653 468
Q ss_pred hcceEEcccccCCc-ccHHHHhccCCC---CCCHH----HHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHH
Q 000909 1068 KHTALVSQEPVIYA-GNIRDNIVFGKL---DASEN----EVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRI 1139 (1230)
Q Consensus 1068 ~~i~~VpQdp~Lf~-gTIreNl~~g~~---~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 1139 (1230)
+.++|+||+|.+|. .|+.+|+.++.. ..+.+ ++.++++..++.+++.+ ...+||+|||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDY-----------YPHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhc-----------ChhhCCHHHHHHH
Confidence 89999999999987 699999986431 12222 34555555555554443 3457999999999
Q ss_pred HHHHHHccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCcEE
Q 000909 1140 AIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKKLDSIALVADGRV 1206 (1230)
Q Consensus 1140 alARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~D~I~vl~~G~I 1206 (1230)
+||||++++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999875 37999999999998878899999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=339.51 Aligned_cols=220 Identities=28% Similarity=0.438 Sum_probs=191.2
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHH-hhhe
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWV-RREM 433 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~-r~~i 433 (1230)
++.++++++|++ -.+++||||++++||+++|+|||||||||++|+|.|+|+|++|+|.++|+||...++..+ |..|
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 678999999974 459999999999999999999999999999999999999999999999999999987664 5679
Q ss_pred EEEccCccccch-hHHHHHhcCCCCC-----------CHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHH
Q 000909 434 GLVSQEHALFGT-SIKDNIMFGKLDA-----------TMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQR 501 (1230)
Q Consensus 434 ~~v~Q~~~l~~~-ti~~Ni~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 501 (1230)
+--||.+.+|++ ||.||+..+.... ...+..++ ...+.+.++.+ |++...++...+||+||+.|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~--~e~A~~~Le~v--gL~~~a~~~A~~LsyG~qR~ 157 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREA--RERARELLEFV--GLGELADRPAGNLSYGQQRR 157 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHH--HHHHHHHHHHc--CCchhhcchhhcCChhHhHH
Confidence 999999999976 9999998763211 00111111 22334556666 89989999999999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHH
Q 000909 502 IAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASL--GRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDL 578 (1230)
Q Consensus 502 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l 578 (1230)
+.|||||+.+|++|+||||.+++.+.....+.+.|+++.+ |.|+++|.||++.+.. ||||+||+.|+++.+|+|+|+
T Consensus 158 LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV 237 (250)
T COG0411 158 LEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEV 237 (250)
T ss_pred HHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHH
Confidence 9999999999999999999999999999999999998764 5899999999999977 999999999999999999999
Q ss_pred Hhh
Q 000909 579 INR 581 (1230)
Q Consensus 579 ~~~ 581 (1230)
.++
T Consensus 238 ~~d 240 (250)
T COG0411 238 RNN 240 (250)
T ss_pred hcC
Confidence 875
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=361.77 Aligned_cols=202 Identities=29% Similarity=0.465 Sum_probs=171.9
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcce
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1071 (1230)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... +.+++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 789999999963 3599999999999999999999999999999999999999999999999998653 34689
Q ss_pred EEcccccCCc-ccHHHHhccCCC--CCC----HHHHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHH
Q 000909 1072 LVSQEPVIYA-GNIRDNIVFGKL--DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARA 1144 (1230)
Q Consensus 1072 ~VpQdp~Lf~-gTIreNl~~g~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARA 1144 (1230)
|+||++.+|. .|+++|+.++.. ... ++++.++++..++.+.. .....+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qrl~lara 142 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAE-----------KRYIWQLSGGQRQRVGIARA 142 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------hCChhhCCHHHHHHHHHHHH
Confidence 9999999887 599999986421 112 22345555555554432 23456899999999999999
Q ss_pred HccCCCEEEeecccCCcCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEe--CcEEEEecCH
Q 000909 1145 IIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKK-LDSIALVA--DGRVVERGTY 1212 (1230)
Q Consensus 1145 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~vl~--~G~Ive~Gt~ 1212 (1230)
|+++|++|||||||++||+.+...+.+.|++.. .|+|+|+|||+++.+.. ||+|++|+ +|+|++.++.
T Consensus 143 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999999999999999999863 38999999999999865 79999998 5999998754
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=361.66 Aligned_cols=220 Identities=27% Similarity=0.426 Sum_probs=183.7
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEECCeecCCC-----C
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAD---DGIVRIDGVDIRRL-----Q 425 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~---~G~i~~~g~~i~~~-----~ 425 (1230)
-|+++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999963 45999999999999999999999999999999999999986 49999999998653 2
Q ss_pred HHHHhhheEEEccCccccch-hHHHHHhcCCCCCCH--H---HHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHH
Q 000909 426 LKWVRREMGLVSQEHALFGT-SIKDNIMFGKLDATM--D---EVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQK 499 (1230)
Q Consensus 426 ~~~~r~~i~~v~Q~~~l~~~-ti~~Ni~~~~~~~~~--~---~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqk 499 (1230)
...+++.++|++|++.+|.. |++||+.++...... . ..........+.+.++.+ |++........+||||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~ 158 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRV--GMVHFAHQRVSTLSGGQQ 158 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHc--CCHHHHhCCccccCHHHH
Confidence 35567889999999998874 999999976421100 0 000011122344556665 676667778889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChh
Q 000909 500 QRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHN 576 (1230)
Q Consensus 500 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~ 576 (1230)
||++||||++.+|++|||||||++||+++.+.+.+.|++.. .|+|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~ 238 (262)
T PRK09984 159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQ 238 (262)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999864 38999999999998755 9999999999999999999
Q ss_pred HH
Q 000909 577 DL 578 (1230)
Q Consensus 577 ~l 578 (1230)
++
T Consensus 239 ~~ 240 (262)
T PRK09984 239 QF 240 (262)
T ss_pred Hh
Confidence 86
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=371.70 Aligned_cols=204 Identities=26% Similarity=0.450 Sum_probs=175.6
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheEEEccCccccch-hHH
Q 000909 370 SIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGT-SIK 448 (1230)
Q Consensus 370 ~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~ 448 (1230)
+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+++||++|++.++.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 459999999999999999999999999999999999999999999999999876 345678899999999999876 999
Q ss_pred HHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 000909 449 DNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDS 526 (1230)
Q Consensus 449 ~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~illlDE~ts~lD~ 526 (1230)
||+.+... ..+.++.. ..+.+.++.+ |++........+||||||||++|||||+.+|++|||||||++||+
T Consensus 85 e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~ 157 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAE-----ERAEELLELF--ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157 (302)
T ss_pred HHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 99986421 11222211 1233455665 666666777889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc-CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhh
Q 000909 527 ESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 527 ~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 581 (1230)
.+.+.+.+.+++.. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 158 ~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 158 RTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999999998864 58999999999999976 999999999999999999998653
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=362.25 Aligned_cols=221 Identities=28% Similarity=0.439 Sum_probs=182.9
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-----CceEEECCeecCC--CC
Q 000909 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAD-----DGIVRIDGVDIRR--LQ 425 (1230)
Q Consensus 353 ~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~i~~~g~~i~~--~~ 425 (1230)
+.|+++|++++|++ +.+|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 46999999999963 35899999999999999999999999999999999999985 8999999999853 34
Q ss_pred HHHHhhheEEEccCccccchhHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHHhC--CCcccchhcCCCCCCChhHHH
Q 000909 426 LKWVRREMGLVSQEHALFGTSIKDNIMFGKLD--A-TMDEVIAAATAANAHNFIRQL--PEGYETKVGERGALLSGGQKQ 500 (1230)
Q Consensus 426 ~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~--~-~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGqkq 500 (1230)
...+++.++|++|++.+|+.|++||+.++... . +..+..+ .+.+.++.+ .+.++...++.+.+|||||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 157 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDD-----IVESALKDADLWDEIKHKIHKSALDLSGGQQQ 157 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHH-----HHHHHHHHcCCcchhhhHhcCCcccCCHHHHH
Confidence 45678899999999999999999999865211 0 1111111 111222222 112233467788899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeC-----CeEEEe
Q 000909 501 RIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDN-----GCLVEI 572 (1230)
Q Consensus 501 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~-----G~i~~~ 572 (1230)
|++||||++++|+++||||||++||+.+...+.+.++++. .++|+|+|||+++.+.. ||+|++|++ |++++.
T Consensus 158 rv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 237 (261)
T PRK14258 158 RLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEF 237 (261)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEe
Confidence 9999999999999999999999999999999999998753 48999999999999875 999999999 999999
Q ss_pred cChhHHHhh
Q 000909 573 GTHNDLINR 581 (1230)
Q Consensus 573 g~~~~l~~~ 581 (1230)
|+++++.+.
T Consensus 238 ~~~~~~~~~ 246 (261)
T PRK14258 238 GLTKKIFNS 246 (261)
T ss_pred CCHHHHHhC
Confidence 999998764
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=360.96 Aligned_cols=218 Identities=32% Similarity=0.429 Sum_probs=183.1
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecCCC--CH
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDA-----DDGIVRIDGVDIRRL--QL 426 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~i~~~--~~ 426 (1230)
.+.+++.+++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 4889999999963 4599999999999999999999999999999999999987 799999999998643 34
Q ss_pred HHHhhheEEEccCccccchhHHHHHhcCCCCC--C---HHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHH
Q 000909 427 KWVRREMGLVSQEHALFGTSIKDNIMFGKLDA--T---MDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQR 501 (1230)
Q Consensus 427 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~--~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqr 501 (1230)
..+++.++|++|++.+|..|++||+.++.... . .+++.++++..++.+ .+....++.+.+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~i~~~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWD-------EVKDKLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCch-------hhhhhhhCCcccCCHHHHHH
Confidence 46788899999999999899999999763211 0 122233333332211 12234466778999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEe--------CCeEEEe
Q 000909 502 IAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVD--------NGCLVEI 572 (1230)
Q Consensus 502 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~--------~G~i~~~ 572 (1230)
++||||++++|+++||||||++||+.+...+.+.+++..+++|+|++||+++.+.. ||+|++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 99999999999999999999999999999999999988778999999999999865 99999996 8999999
Q ss_pred cChhHHHhh
Q 000909 573 GTHNDLINR 581 (1230)
Q Consensus 573 g~~~~l~~~ 581 (1230)
|+++++.+.
T Consensus 238 g~~~~~~~~ 246 (261)
T PRK14263 238 GPTAQIFQN 246 (261)
T ss_pred CCHHHHHhC
Confidence 999998764
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=361.05 Aligned_cols=219 Identities=33% Similarity=0.431 Sum_probs=183.0
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEECCeecCC--CC
Q 000909 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDA-----DDGIVRIDGVDIRR--LQ 425 (1230)
Q Consensus 353 ~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~i~~--~~ 425 (1230)
.-|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 19 SVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred ceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 36999999999963 3599999999999999999999999999999999999864 69999999999864 33
Q ss_pred HHHHhhheEEEccCccccchhHHHHHhcCCCCCC-----HHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHH
Q 000909 426 LKWVRREMGLVSQEHALFGTSIKDNIMFGKLDAT-----MDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQ 500 (1230)
Q Consensus 426 ~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~-----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkq 500 (1230)
...+++.|+|++|++.+|+.|++||+.++..... .+++.++++.+++.+ ++.......+.+|||||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LSgGq~q 168 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWE-------EVKDKLKEKGTALSGGQQQ 168 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccch-------hhHHHhcCCcccCCHHHHH
Confidence 4567889999999999998899999987632111 111222222222211 2233456777899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEe---------CCeEE
Q 000909 501 RIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVD---------NGCLV 570 (1230)
Q Consensus 501 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~---------~G~i~ 570 (1230)
|++|||||+.+|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+.. ||++++|+ +|+++
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 999999999999999999999999999999999999988778999999999999865 99999998 89999
Q ss_pred EecChhHHHhh
Q 000909 571 EIGTHNDLINR 581 (1230)
Q Consensus 571 ~~g~~~~l~~~ 581 (1230)
+.|+++++...
T Consensus 249 ~~g~~~~~~~~ 259 (274)
T PRK14265 249 EFSPTEQMFGS 259 (274)
T ss_pred EeCCHHHHHhC
Confidence 99999998764
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=324.80 Aligned_cols=213 Identities=28% Similarity=0.516 Sum_probs=182.9
Q ss_pred EEEEEEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCCCeEEECCeecCCCChHHHhhcce
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~lR~~i~ 1071 (1230)
+++.+++.+|++ ...+++||||+++.||.+||.|+|||||||+++.|..|+.|++|.|.|||+|+.+ .+...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcc
Confidence 688999999974 3348999999999999999999999999999999999999999999999999987 4567899999
Q ss_pred EEcccccCCc-ccHHHHhccCCC--CCCHH----HHHHHHHHhchHHHHHhccccccccccCCCCCCChhHHHHHHHHHH
Q 000909 1072 LVSQEPVIYA-GNIRDNIVFGKL--DASEN----EVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARA 1144 (1230)
Q Consensus 1072 ~VpQdp~Lf~-gTIreNl~~g~~--~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlalARA 1144 (1230)
+++-+.-|+. -|.||||.|... +.++. ++.+.-+..++.+. +|..+| +||-|+|||++||||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~-------~~rRv~----~~S~G~kqkV~iARA 147 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEY-------LDRRVG----EFSTGMKQKVAIARA 147 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHH-------HHHHHh----hhchhhHHHHHHHHH
Confidence 9997766765 599999985421 33333 33333344444444 344554 599999999999999
Q ss_pred HccCCCEEEeecccCCcCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhh-hcCEEEEEeCcEEEEecCHhHHhhc
Q 000909 1145 IIRNPTILLLDEATSALDVQSEQVVQEALDRIMM-GRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1145 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eLl~~ 1218 (1230)
|+++|+|+|||||||+||..+.+.+++-+.+... |++||.-||-++.++ -||+|+++.+|++|..|+++++.++
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 9999999999999999999999999999998765 999999999999998 7999999999999999999999876
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=350.32 Aligned_cols=206 Identities=28% Similarity=0.469 Sum_probs=171.5
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheE
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
|+++|++++|++. . .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 5789999999632 2 39999999999999999999999999999999999999999999999976654 357899
Q ss_pred EEccCccccch-hHHHHHhcCCC-CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCC
Q 000909 435 LVSQEHALFGT-SIKDNIMFGKL-DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNP 512 (1230)
Q Consensus 435 ~v~Q~~~l~~~-ti~~Ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 512 (1230)
|++|++.+|.+ |++||+.++.. .....+ .....+.+.++.+ |++........+||||||||++||||++.+|
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~----~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p 147 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTA----EDRQAIEVALARV--GLAGLEKRLPGELSGGERQRVALARVLVRDK 147 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccH----HHHHHHHHHHHHc--CCHHHHhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99999999975 99999987642 111000 0011223334444 5555566677899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEec
Q 000909 513 VILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIG 573 (1230)
Q Consensus 513 ~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 573 (1230)
+++||||||++||++++..+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 148 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 148 PVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999998864 38999999999999966 9999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=355.60 Aligned_cols=215 Identities=33% Similarity=0.478 Sum_probs=183.1
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheE
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 478999999973 359999999999999999999999999999999999999999999999999987654 367899
Q ss_pred EEccCccccch-hHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccC
Q 000909 435 LVSQEHALFGT-SIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKN 511 (1230)
Q Consensus 435 ~v~Q~~~l~~~-ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~ 511 (1230)
|++|++.+|.+ |++||+.++... .+.+... ..+.+.++.+ |++..+.....+||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIK-----ERVAEALDLV--QLEGYANRKPSQLSGGQQQRVAIARALVNE 148 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999965 999999865211 1111111 1223344444 666667777789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhh
Q 000909 512 PVILLLDEATSALDSESETLVQNALDQASL--GRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 512 ~~illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 581 (1230)
|+++||||||++||+.+.+.+.+.+++..+ |+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 149 p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 149 PKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999999999999988653 8999999999999865 999999999999999999888653
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=360.61 Aligned_cols=231 Identities=22% Similarity=0.344 Sum_probs=186.2
Q ss_pred cEEEEEEEEECCCC------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHH
Q 000909 354 EIEFEHVKFSYPSR------PDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLK 427 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~------~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~ 427 (1230)
-|+++||+++|+.. .++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999631 124699999999999999999999999999999999999999999999999999765555
Q ss_pred HHhhheEEEccCcc--ccch-hHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCccc-chhcCCCCCCChhHHH
Q 000909 428 WVRREMGLVSQEHA--LFGT-SIKDNIMFGKL---DATMDEVIAAATAANAHNFIRQLPEGYE-TKVGERGALLSGGQKQ 500 (1230)
Q Consensus 428 ~~r~~i~~v~Q~~~--l~~~-ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~~~~g~~LSgGqkq 500 (1230)
..++.++|++|++. +++. |+.+|+.++.. .....+.. ..+.+.++.+ |++ ........+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~q 156 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQRE-----KQIIETLRQV--GLLPDHASYYPHMLAPGQKQ 156 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHH-----HHHHHHHHHc--CCChHHHhcCchhcCHHHHH
Confidence 66678999999985 4443 89999875321 11111111 1223444554 553 2345566789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhH
Q 000909 501 RIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHND 577 (1230)
Q Consensus 501 ri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~ 577 (1230)
|++||||++.+|+++||||||++||+.+...+.+.|.++. .|+|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 157 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 236 (267)
T PRK15112 157 RLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTAD 236 (267)
T ss_pred HHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 9999999999999999999999999999999999999864 38899999999999986 99999999999999999999
Q ss_pred HHhhcC-cHHHHHHH
Q 000909 578 LINRID-GHYAKMAK 591 (1230)
Q Consensus 578 l~~~~~-~~~~~~~~ 591 (1230)
+..... ..+.+++.
T Consensus 237 ~~~~~~~~~~~~~~~ 251 (267)
T PRK15112 237 VLASPLHELTKRLIA 251 (267)
T ss_pred HhcCCCCHHHHHHHH
Confidence 876432 33444543
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=360.21 Aligned_cols=215 Identities=22% Similarity=0.280 Sum_probs=177.6
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC--CCCCceEEECCeecCCCCHHHH-hh
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFY--DADDGIVRIDGVDIRRLQLKWV-RR 431 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~--~~~~G~i~~~g~~i~~~~~~~~-r~ 431 (1230)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+.... +.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 578999999963 45999999999999999999999999999999999994 7999999999999988776554 45
Q ss_pred heEEEccCccccch-hHHHHHhcCCCC---------CCHHHHHHHHHHHhHHHHHHhCCCcccc-hhcCCCC-CCChhHH
Q 000909 432 EMGLVSQEHALFGT-SIKDNIMFGKLD---------ATMDEVIAAATAANAHNFIRQLPEGYET-KVGERGA-LLSGGQK 499 (1230)
Q Consensus 432 ~i~~v~Q~~~l~~~-ti~~Ni~~~~~~---------~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~~~~g~-~LSgGqk 499 (1230)
.++|++|++.+|++ |++||+.+.... .+.++. ...+.+.++.+ |++. ....... +||||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~ 150 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDF-----LKLLKAKLALL--GMDEEFLNRSVNEGFSGGEK 150 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHH-----HHHHHHHHHHc--CCchhhcccccccCcCHHHH
Confidence 69999999999876 999999764210 011111 11233445554 5543 3344444 5999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhc--cCEEEEEeCCeEEEecChh
Q 000909 500 QRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN--ADLIAVVDNGCLVEIGTHN 576 (1230)
Q Consensus 500 qri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~--~d~i~~l~~G~i~~~g~~~ 576 (1230)
||++|||||+.+|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (243)
T TIGR01978 151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230 (243)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHH
Confidence 99999999999999999999999999999999999998864 47999999999999975 7999999999999999987
Q ss_pred HHH
Q 000909 577 DLI 579 (1230)
Q Consensus 577 ~l~ 579 (1230)
++.
T Consensus 231 ~~~ 233 (243)
T TIGR01978 231 LAK 233 (243)
T ss_pred Hhc
Confidence 653
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=357.52 Aligned_cols=227 Identities=28% Similarity=0.451 Sum_probs=187.1
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECC------eecCCCCH
Q 000909 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDG------VDIRRLQL 426 (1230)
Q Consensus 353 ~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g------~~i~~~~~ 426 (1230)
..|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++...+.
T Consensus 9 ~~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~ 85 (257)
T PRK14246 9 DVFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85 (257)
T ss_pred hheeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCH
Confidence 45999999999963 4599999999999999999999999999999999999999997666655 66666677
Q ss_pred HHHhhheEEEccCccccch-hHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHHhCCCccc----chhcCCCCCCChhH
Q 000909 427 KWVRREMGLVSQEHALFGT-SIKDNIMFGKLD--A-TMDEVIAAATAANAHNFIRQLPEGYE----TKVGERGALLSGGQ 498 (1230)
Q Consensus 427 ~~~r~~i~~v~Q~~~l~~~-ti~~Ni~~~~~~--~-~~~~~~~~~~~~~~~~~i~~l~~g~~----t~~~~~g~~LSgGq 498 (1230)
..+|++++|++|++.+|.+ |++||+.++... . ..++..+ .+.+.++.+ |++ ...++.+..|||||
T Consensus 86 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~~~~~--~l~~~~~~~~~~~~~~LS~G~ 158 (257)
T PRK14246 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKK-----IVEECLRKV--GLWKEVYDRLNSPASQLSGGQ 158 (257)
T ss_pred HHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHH-----HHHHHHHHc--CCCccchhhhcCCcccCCHHH
Confidence 7788999999999999875 999999975321 1 1222211 122233333 332 34567788999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-ccCEEEEEeCCeEEEecChhH
Q 000909 499 KQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVR-NADLIAVVDNGCLVEIGTHND 577 (1230)
Q Consensus 499 kqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~g~~~~ 577 (1230)
|||++||||++.+|+++||||||++||+.++..+.+.+.++.+++|+|++||+++.+. .||++++|++|++++.|++++
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~ 238 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNE 238 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999998766799999999999995 499999999999999999999
Q ss_pred HHhhcCcHHHHH
Q 000909 578 LINRIDGHYAKM 589 (1230)
Q Consensus 578 l~~~~~~~~~~~ 589 (1230)
+.+.+...|.+.
T Consensus 239 ~~~~~~~~~~~~ 250 (257)
T PRK14246 239 IFTSPKNELTEK 250 (257)
T ss_pred HHhCCCcHHHHH
Confidence 987544445443
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=353.89 Aligned_cols=214 Identities=31% Similarity=0.481 Sum_probs=180.0
Q ss_pred EEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCCHHHHhhheE
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
|+++||+++|++ . ..|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ++.++
T Consensus 2 l~~~~l~~~~~~---~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVS 74 (232)
T ss_pred eEEEEEEEEECC---c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEE
Confidence 689999999963 2 2499999999999999999999999999999999999999999999998766542 56899
Q ss_pred EEccCccccch-hHHHHHhcCCC-CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCC
Q 000909 435 LVSQEHALFGT-SIKDNIMFGKL-DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNP 512 (1230)
Q Consensus 435 ~v~Q~~~l~~~-ti~~Ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~ 512 (1230)
|++|++.+|.+ |++||+.++.. .....+ .....+.+.++.+ |++..+......||||||||++||||++++|
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~----~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p 148 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNA----AQREKLHAIARQM--GIEDLLARLPGQLSGGQRQRVALARCLVREQ 148 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCH----HHHHHHHHHHHHc--CcHHHHhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99999999975 99999987531 111000 1112233445554 6666667777899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhh
Q 000909 513 VILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 513 ~illlDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 581 (1230)
+++||||||++||+.+.+.+.+.+++.. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 149 ~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 149 PILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999998864 38899999999999865 999999999999999999988763
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=360.47 Aligned_cols=220 Identities=30% Similarity=0.401 Sum_probs=181.5
Q ss_pred cEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC--C---CCceEEECCeecCC--CCH
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD--A---DDGIVRIDGVDIRR--LQL 426 (1230)
Q Consensus 354 ~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~--~---~~G~i~~~g~~i~~--~~~ 426 (1230)
-|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999973 459999999999999999999999999999999999975 5 59999999999864 334
Q ss_pred HHHhhheEEEccCccccchhHHHHHhcCCC--CC-CHHHHHHHHHHHhHHHHHHhC--CCcccchhcCCCCCCChhHHHH
Q 000909 427 KWVRREMGLVSQEHALFGTSIKDNIMFGKL--DA-TMDEVIAAATAANAHNFIRQL--PEGYETKVGERGALLSGGQKQR 501 (1230)
Q Consensus 427 ~~~r~~i~~v~Q~~~l~~~ti~~Ni~~~~~--~~-~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGqkqr 501 (1230)
..+++.++|++|++.+|+.|+++|+.++.. .. ..+...+. +.+.++.+ .+++.......+.+||||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qr 156 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEA-----VETSLKQAAIWDEVKDHLHESALSLSGGQQQR 156 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHH-----HHHHHHHcCCccchhhHHhcCcccCCHHHHHH
Confidence 567789999999999998999999987521 11 11111111 11112222 1223345667788999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHh
Q 000909 502 IAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 502 i~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
++||||++.+|+++||||||++||+.+++.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14255 157 VCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFL 236 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999987667899999999999865 99999999999999999988876
Q ss_pred h
Q 000909 581 R 581 (1230)
Q Consensus 581 ~ 581 (1230)
.
T Consensus 237 ~ 237 (252)
T PRK14255 237 N 237 (252)
T ss_pred C
Confidence 4
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=375.51 Aligned_cols=213 Identities=30% Similarity=0.436 Sum_probs=181.9
Q ss_pred EEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCCC----HHHHhhheE
Q 000909 359 HVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQ----LKWVRREMG 434 (1230)
Q Consensus 359 ~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~----~~~~r~~i~ 434 (1230)
|++++|++ . .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ....+++++
T Consensus 4 ~l~~~~~~---~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 89999963 2 35 999999999999999999999999999999999999999999999986532 235678899
Q ss_pred EEccCccccch-hHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCChhHHHHHHHHHHhccCCC
Q 000909 435 LVSQEHALFGT-SIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPV 513 (1230)
Q Consensus 435 ~v~Q~~~l~~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGqkqri~iARal~~~~~ 513 (1230)
|++|++.+|+. |++||+.++.......+. ...+.+.++.+ |++...+..+.+||||||||++|||||+.+|+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~-----~~~~~~~l~~~--gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~ 151 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSER-----RISFERVIELL--GIGHLLGRLPGRLSGGEKQRVAIGRALLSSPR 151 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHH-----HHHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999999975 999999987432221111 12234556666 78777888889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhc-cCEEEEEeCCeEEEecChhHHHhhcC
Q 000909 514 ILLLDEATSALDSESETLVQNALDQASL--GRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRID 583 (1230)
Q Consensus 514 illlDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 583 (1230)
+|||||||++||+.+++.+.+.|+++.+ |+|+|+|||+++.+.. ||+|++|++|++++.|+++++...+.
T Consensus 152 lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 224 (354)
T TIGR02142 152 LLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD 224 (354)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcC
Confidence 9999999999999999999999988643 7999999999999865 99999999999999999999876533
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-40 Score=316.82 Aligned_cols=222 Identities=31% Similarity=0.511 Sum_probs=190.1
Q ss_pred ccEEEEEEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEECCeecCCC--------
Q 000909 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRL-------- 424 (1230)
Q Consensus 353 ~~i~~~~v~~~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~-------- 424 (1230)
..++++|+.++|+.. .+|++||++-++|+.+.|+|.|||||||+++||.=+-.|+.|.|.++|..|+-.
T Consensus 5 ~~l~v~dlHK~~G~~---eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~ 81 (256)
T COG4598 5 NALEVEDLHKRYGEH---EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLK 81 (256)
T ss_pred cceehhHHHhhcccc---hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCee
Confidence 368899999999743 499999999999999999999999999999999999999999999999988532
Q ss_pred --C---HHHHhhheEEEccCccccch-hHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCcccchhcCCCCCCC
Q 000909 425 --Q---LKWVRREMGLVSQEHALFGT-SIKDNIMFGKL---DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLS 495 (1230)
Q Consensus 425 --~---~~~~r~~i~~v~Q~~~l~~~-ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 495 (1230)
+ .+.+|.+.|+|+|+..|++. |+.||+.-+.- ..+..+.. ..+..++.+. |+.......+..||
T Consensus 82 ~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~-----e~Ae~~L~kV--Gi~ek~~~YP~~LS 154 (256)
T COG4598 82 PADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAI-----ERAEKYLAKV--GIAEKADAYPAHLS 154 (256)
T ss_pred eCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHH-----HHHHHHHHHh--CchhhhhcCccccC
Confidence 1 34678899999999999965 99999974421 11222222 2233456666 88888888899999
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEecCchhhhc-cCEEEEEeCCeEEEec
Q 000909 496 GGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQA-SLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIG 573 (1230)
Q Consensus 496 gGqkqri~iARal~~~~~illlDE~ts~lD~~~~~~i~~~l~~~-~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g 573 (1230)
|||+||+||||||..+|+++++|||||||||+---++.+.+.++ ..|+|.++|||.+.+.++ +.+++++.+|.|-|+|
T Consensus 155 GGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G 234 (256)
T COG4598 155 GGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEG 234 (256)
T ss_pred chHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccC
Confidence 99999999999999999999999999999999998999999886 469999999999999998 8999999999999999
Q ss_pred ChhHHHhhcCc
Q 000909 574 THNDLINRIDG 584 (1230)
Q Consensus 574 ~~~~l~~~~~~ 584 (1230)
+|+++..++..
T Consensus 235 ~P~qvf~nP~S 245 (256)
T COG4598 235 PPEQVFGNPQS 245 (256)
T ss_pred ChHHHhcCCCC
Confidence 99999886543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1230 | ||||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 0.0 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 0.0 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-165 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-88 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 4e-77 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 3e-65 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 1e-76 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-64 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 6e-61 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 8e-60 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-56 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 8e-51 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-56 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 8e-55 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 4e-54 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 6e-49 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 1e-41 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 6e-46 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 6e-40 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 6e-46 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 6e-40 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 8e-46 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 7e-40 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-45 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 2e-39 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-45 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-39 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 4e-45 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 4e-38 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 9e-45 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-38 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 9e-45 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-38 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-44 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-41 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 2e-39 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 3e-39 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 4e-34 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 6e-36 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-33 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 9e-35 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-31 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-33 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-30 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-15 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-12 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 6e-12 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-12 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-11 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 3e-12 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 1e-07 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 5e-12 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 2e-07 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 5e-12 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 2e-07 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-11 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-10 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 2e-11 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 2e-11 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 2e-11 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 5e-11 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 2e-09 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 8e-11 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 1e-06 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 3e-10 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 3e-10 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-10 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-10 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 5e-10 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 9e-10 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-09 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-09 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 3e-05 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-09 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 3e-05 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 4e-09 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 5e-09 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 6e-09 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 7e-05 | ||
| 1g29_1 | 372 | Malk Length = 372 | 7e-09 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-04 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 8e-09 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 9e-09 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 1e-08 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-08 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-04 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 2e-08 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 3e-08 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-08 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 3e-08 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 2e-04 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 6e-08 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 7e-08 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 9e-08 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 1e-07 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 1e-07 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-07 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 3e-07 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 1e-06 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 1e-06 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 6e-05 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 6e-05 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 7e-05 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 2e-04 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 7e-04 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 6e-04 |
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 1536 bits (3980), Expect = 0.0
Identities = 459/1256 (36%), Positives = 721/1256 (57%), Gaps = 36/1256 (2%)
Query: 2 RREKNKNNIGI--IFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQ 59
+++ K + + +FR+A D L M++GT+ AI G++ +++ + +S
Sbjct: 25 EKKEKKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNV 84
Query: 60 SQQNH----------HENFLDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIR 109
S+ + +E+ + Y+ +G V++VA+++ W + RQ+ KIR
Sbjct: 85 SKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIR 144
Query: 110 YKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLA 169
K+ A++ QE+G+FD E+ ++ D S I E + +K+ +F + F G
Sbjct: 145 QKFFHAIMNQEIGWFDVH---DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFI 201
Query: 170 FSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVY 229
W+L+LV +L + I+ K L + K Y KA A+ E+ L++I+TV
Sbjct: 202 IGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVI 261
Query: 230 SFSAERRIIDRYEAILDSTTKLGIKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKG 288
+F +++ ++RY L+ +LGIK+ +++G+ L +A +A WYG+ LV+ K
Sbjct: 262 AFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKE 321
Query: 289 ETGGKIYAAGISFILSGLSLGSALPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVL 348
+ G++ S ++ S+G A P ++ F A AA +F ID P ID G
Sbjct: 322 YSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKP 381
Query: 349 DEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD 408
D ++G +EF+++ FSYPSR + +LK NLKVK+G++VALVG SG GKST + L+QR YD
Sbjct: 382 DNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD 441
Query: 409 ADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAAT 468
DG+V IDG DIR + ++++R +G+VSQE LF T+I +NI +G+ D TMDE+ A
Sbjct: 442 PLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVK 501
Query: 469 AANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSES 528
ANA++FI +LP ++T VGERGA LSGGQKQRIAIARA+++NP ILLLDEATSALD+ES
Sbjct: 502 EANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 561
Query: 529 ETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAK 588
E +VQ ALD+A GRTT+V+AH+LSTVRNAD+IA D G +VE G H++L+ G Y K
Sbjct: 562 EAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE-KGIYFK 620
Query: 589 MAKLQR-----QFSCDDQETIPETHVSSVTRSSGGRLSAARSSPAIFASPLPVIDSPQPV 643
+ Q + + ++ E ++ G R S D
Sbjct: 621 LVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLST 680
Query: 644 T------YLPPSFFRLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSH 697
P SF+R+L LN+ EW ++G AI G +QP +++ ++ F
Sbjct: 681 KEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGP 740
Query: 698 SE-MQSRIRTYSLIFCSLSLISLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWF 756
E + +SL+F L +IS LQ + F G LTKR+R + + +L + +WF
Sbjct: 741 PETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWF 800
Query: 757 DEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAV 816
D+ +N++GAL +RL+N+A+ VK R++++ Q + + +I+ L+ W+L ++++A+
Sbjct: 801 DDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAI 860
Query: 817 QPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQ 876
P+ + +LS + K S +IA EA+ N R V S K ++ ++
Sbjct: 861 VPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSL 920
Query: 877 EEPRKQARKKSWLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVST 936
+ P + A KK+ + GI Q + + S+A F +G LV + ++ +V F +V
Sbjct: 921 QIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFG 980
Query: 937 GKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRR 996
+ + S D AK + + + + +I+++ I S T+G K + G ++
Sbjct: 981 AMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYS-----TQGLKPNMLEGNVQFSG 1035
Query: 997 VDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGM 1056
V F YP+RP VL+ S+EVK G ++ LVG SGCGKSTV+ L++RFYD GSV +DG
Sbjct: 1036 VVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGK 1095
Query: 1057 DVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGK--LDASENEVVEAARAANAHEFIS 1114
++++L+V W R +VSQEP+++ +I +NI +G S E+V AA+ AN H+FI
Sbjct: 1096 EIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFID 1155
Query: 1115 SLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALD 1174
SL D Y T G++G QLSGGQ+QRIAIARA++R P ILLLDEATSALD +SE+VVQEALD
Sbjct: 1156 SLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALD 1215
Query: 1175 RIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLATLQS 1230
+ GRT IV+AHRL+TI+ D I ++ +G+V E GT+ QL +G +F++ ++Q+
Sbjct: 1216 KAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQA 1271
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 669 bits (1727), Expect = 0.0
Identities = 198/605 (32%), Positives = 330/605 (54%), Gaps = 12/605 (1%)
Query: 1 MRREKNKNNIGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQS 60
+ + + I + T+ V+G AI +G V S+++ +
Sbjct: 684 LDEDVPPASFWRILKLN-STEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVF------T 736
Query: 61 QQNHHENFLDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQE 120
E SL F+ LG+ + FL+G+ + K E ++RY +++LRQ+
Sbjct: 737 NGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQD 796
Query: 121 VGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSL 180
V +FD TT + ++ D + ++ ++ + N + +G+ S + W+L+L
Sbjct: 797 VSWFD-DPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTL 855
Query: 181 VAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDR 240
+ + ++ I G++ K L + K KE + I +A+ + +TV S + E++
Sbjct: 856 LLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETM 915
Query: 241 YEAILDSTTKLGIKQGTAKGLAVG-STGLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGI 299
Y L + +K+ G+ + + + +A +G++LV + T +
Sbjct: 916 YAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFS 975
Query: 300 SFILSGLSLGSALPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEH 359
+ + +++G + +A+++AS I I++ PEID T+GL + + G ++F
Sbjct: 976 AIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSG 1035
Query: 360 VKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGV 419
V F+YP+RP VL+ +L+VK G+++ALVG+SG GKST + L++RFYD G V +DG
Sbjct: 1036 VVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGK 1095
Query: 420 DIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGK--LDATMDEVIAAATAANAHNFIR 477
+I++L ++W+R ++G+VSQE LF SI +NI +G + +E++ AA AN H FI
Sbjct: 1096 EIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFID 1155
Query: 478 QLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALD 537
LP+ Y T+VG++G LSGGQKQRIAIARA+++ P ILLLDEATSALD+ESE +VQ ALD
Sbjct: 1156 SLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALD 1215
Query: 538 QASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQFS 597
+A GRT +V+AH+LST++NADLI V+ NG + E GTH L+ + G Y M +Q
Sbjct: 1216 KAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ-KGIYFSMVSVQAGAK 1274
Query: 598 CDDQE 602
Sbjct: 1275 RSYVH 1279
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 508 bits (1311), Expect = e-167
Identities = 188/609 (30%), Positives = 304/609 (49%), Gaps = 46/609 (7%)
Query: 1 MRREKNKNNIGIIFRFAD--RTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQT 58
M +K+ + R +++ + I + S +L +++ GFG+T
Sbjct: 1 MHNDKDLSTWQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDD-GFGKT 59
Query: 59 QSQQNHHENFLDEVEKCSLYFVYLGLAVMVVAFLEG-------YCWSKTSERQVVKIRYK 111
+++ L V+ + L G YC S S + V+ +R +
Sbjct: 60 DRS----------------VLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRR 103
Query: 112 YLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFS 171
++ V FFD +T +++ I+ D+ + S + V + I
Sbjct: 104 LFGHMMGMPVAFFDK---QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMM 160
Query: 172 TYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSF 231
Y+SW+LS++ ++ I + K +SK G+ EQ L K V F
Sbjct: 161 FYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIF 220
Query: 232 SAERRIIDRYEAILDSTTKLGIKQGTAKGLAVGSTGL--SFAIWAFLAWYGSHLVMFKGE 289
+ R++ + + G+K +A ++ L S A+ AF+ + S +
Sbjct: 221 GGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLAL-AFVLYAASFPSVMDSL 279
Query: 290 TGGKIYAAGISFILSGLSLGSALPEL----KYFTEASIAASRIFDRIDRVPEIDGEDTKG 345
T G I S ++L L L F A +F +D E D
Sbjct: 280 TAGTI----TVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKD---EGK 332
Query: 346 LVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQR 405
V+D G++EF +V F+YP R + L++ NLK+ AGK+VALVG SGSGKST +L+ R
Sbjct: 333 RVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITR 391
Query: 406 FYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDA-TMDEVI 464
FYD D+G + +DG D+R L +R ++ LVSQ LF ++ +NI + + + + +++
Sbjct: 392 FYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIE 451
Query: 465 AAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSAL 524
AA A A +FI ++ G +T +GE G LLSGGQ+QRIAIARA++++ IL+LDEATSAL
Sbjct: 452 EAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSAL 511
Query: 525 DSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDG 584
D+ESE +Q ALD+ RT+LV+AH+LST+ AD I VV++G +VE GTH++L+ + G
Sbjct: 512 DTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HG 570
Query: 585 HYAKMAKLQ 593
YA++ K+Q
Sbjct: 571 VYAQLHKMQ 579
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 490 bits (1264), Expect = e-160
Identities = 169/584 (28%), Positives = 305/584 (52%), Gaps = 19/584 (3%)
Query: 649 SFFRLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYS 708
+F RL AP ++ ++ I + + ++ F K+ + +
Sbjct: 12 TFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSV---LLWMP 68
Query: 709 LIFCSLSLISLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCS 768
L+ L ++ + + Y +++ G++ +R R+ ++ A+FD + S+G L S
Sbjct: 69 LVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFD--KQSTGTLLS 126
Query: 769 RLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILC--FYT 826
R++ ++ V S + + +V+ +++ IM +W+L+++++ + P+ + +
Sbjct: 127 RITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVS 186
Query: 827 RKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKK 886
++ S+S N + T A + + H+ V FG + FD+ + R Q K
Sbjct: 187 KR--FRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKM 244
Query: 887 SWLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSM 946
+ I Q + ++ A + ++AG + F +++ + + ++
Sbjct: 245 VSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNV 304
Query: 947 TSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPD 1006
+ +G A ++F ILD + +G R + + +G +E R V F YP R +
Sbjct: 305 NAQFQRGMAACQTLFAILDSEQEKD------EGKR--VIDRATGDLEFRNVTFTYPGR-E 355
Query: 1007 ALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWY 1066
LR ++++ G +V LVG+SG GKST+ LI RFYD+++G + +DG D+RE +
Sbjct: 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL 415
Query: 1067 RKHTALVSQEPVIYAGNIRDNIVFGKLDA-SENEVVEAARAANAHEFISSLKDGYETECG 1125
R ALVSQ ++ + +NI + + + S ++ EAAR A A +FI+ + +G +T G
Sbjct: 416 RNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIG 475
Query: 1126 ERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVV 1185
E GV LSGGQRQRIAIARA++R+ IL+LDEATSALD +SE+ +Q ALD + RT++V+
Sbjct: 476 ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVI 535
Query: 1186 AHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLATLQ 1229
AHRL+TI++ D I +V DG +VERGT+++L G + L +Q
Sbjct: 536 AHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ 579
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 495 bits (1276), Expect = e-162
Identities = 169/542 (31%), Positives = 266/542 (49%), Gaps = 29/542 (5%)
Query: 68 FLDEV--EKCSLYFVYLGLAVMVVAFLEG-------YCWSKTSERQVVKIRYKYLEAVLR 118
LDE S + L ++ + F+ G YC S S V+++R + +
Sbjct: 51 LLDEGFGNAESNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMH 110
Query: 119 QEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRL 178
V FFD + +T +++ I+ D+ + S + V + I L + SW+L
Sbjct: 111 MPVRFFDQE---STGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQL 167
Query: 179 SLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRII 238
SLV ++ K +S+ G + EQ L K V S+ +
Sbjct: 168 SLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVER 227
Query: 239 DRYEAILDSTTKLGIKQGTAKGLAVGSTGL--SFAIWAFLAWYGSHLVMFKGETGGKIYA 296
R++ + +S + +K +A+ +A + S A+ + + S + T G
Sbjct: 228 KRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLAL-FAVLFLASVDSIRAELTPGTF-- 284
Query: 297 AGISFILSGLSLGSALPEL----KYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVR 352
+ L L L F A +F +D E D + V
Sbjct: 285 --TVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD-NGKY--EAERVN 339
Query: 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDG 412
GE++ + V F+Y + + L + + GK+VALVG SGSGKST L RFYD D G
Sbjct: 340 GEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSG 398
Query: 413 IVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFG-KLDATMDEVIAAATAAN 471
+ +DG D+R +L +RR LVSQ LF +I +NI + + + T +++ AA A+
Sbjct: 399 SICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAH 458
Query: 472 AHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETL 531
A FI +P+G +T +GE G LSGGQ+QR+AIARA++++ +L+LDEATSALD+ESE
Sbjct: 459 AMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERA 518
Query: 532 VQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAK 591
+Q ALD+ +T LV+AH+LST+ AD I VVD G ++E G H DL+ + DG YA++ +
Sbjct: 519 IQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQ-DGAYAQLHR 577
Query: 592 LQ 593
+Q
Sbjct: 578 IQ 579
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 478 bits (1234), Expect = e-156
Identities = 158/584 (27%), Positives = 295/584 (50%), Gaps = 19/584 (3%)
Query: 649 SFFRLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYS 708
+F RL + ++ +++ + + + ++ F + S +R
Sbjct: 12 TFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNF---LRILP 68
Query: 709 LIFCSLSLISLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCS 768
+ L + Y +++ G + ++R R+ + +FD Q S+G L S
Sbjct: 69 FMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFD--QESTGGLLS 126
Query: 769 RLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILC--FYT 826
R++ ++ V + + +V+ +++ + + +W+L++V+I V P+ F +
Sbjct: 127 RITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVS 186
Query: 827 RKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKK 886
++ +S N A T A + + H++V S+G + FD+ R+Q K
Sbjct: 187 KR--FRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKL 244
Query: 887 SWLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSM 946
I Q + ++ + + +++ G F + + + S+
Sbjct: 245 VSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSV 304
Query: 947 TSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPD 1006
TS+ +G A ++F ++D ++ +G + ++++G+++++ V F Y + +
Sbjct: 305 TSEFQRGMAACQTLFGLMDLETERD------NGKY--EAERVNGEVDVKDVTFTYQGK-E 355
Query: 1007 ALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWY 1066
L S + G +V LVG+SG GKST+ L RFYDV+ GS+ +DG DVR+ +
Sbjct: 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNL 415
Query: 1067 RKHTALVSQEPVIYAGNIRDNIVFG-KLDASENEVVEAARAANAHEFISSLKDGYETECG 1125
R+H ALVSQ ++ I +NI + + + + ++ +AAR A+A EFI ++ G +T G
Sbjct: 416 RRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIG 475
Query: 1126 ERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVV 1185
E G LSGGQRQR+AIARA++R+ +L+LDEATSALD +SE+ +Q ALD + +T +V+
Sbjct: 476 ENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVI 535
Query: 1186 AHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLATLQ 1229
AHRL+TI++ D I +V +G ++ERG +A L GA+ L +Q
Sbjct: 536 AHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQ 579
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 478 bits (1234), Expect = e-156
Identities = 167/579 (28%), Positives = 278/579 (48%), Gaps = 27/579 (4%)
Query: 21 DILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFV 80
I++ ++ ++ I ++ E +
Sbjct: 19 TIIVGIIKFG----------IPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALF 68
Query: 81 YLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSIS 140
+ + F+ Y TS + + IR K + F+ + +VI+ +
Sbjct: 69 IFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYAN---NQVGQVISRVI 125
Query: 141 KDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLIIPGMIYGKYL 200
D ++ + + ++ I L+ + +L+L A I+ ++ L
Sbjct: 126 NDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRL 185
Query: 201 IYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLGIKQGTAKG 260
L+++ + + + + + I V SF+ E ++ + +K
Sbjct: 186 RKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNA 245
Query: 261 LAVGSTGLSFAI-WAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFT 319
+ + I + G++L + T G + +F+ L L L
Sbjct: 246 YSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTL----AAFVGYLELLFGPLRRLVASF 301
Query: 320 E----ASIAASRIFDRIDRVPEI-DGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLK 374
+ + R+F ID +I +G + ++ +G I+ +HV F Y ++ +LK
Sbjct: 302 TTLTQSFASMDRVFQLIDEDYDIKNGVGAQ--PIEIKQGRIDIDHVSFQYNDN-EAPILK 358
Query: 375 DFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434
D NL ++ G++VA VG SG GKST I L+ RFYD G + IDG +I+ +R ++G
Sbjct: 359 DINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIG 418
Query: 435 LVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALL 494
LV Q++ LF ++K+NI+ G+ AT +EV+ AA ANAH+FI LP+GY+T+VGERG L
Sbjct: 419 LVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKL 478
Query: 495 SGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLST 554
SGGQKQR++IAR + NP IL+LDEATSALD ESE+++Q ALD S RTTL+VAH+LST
Sbjct: 479 SGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLST 538
Query: 555 VRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQ 593
+ +AD I V++NG +VE GTH +LI + G Y + +Q
Sbjct: 539 ITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLYSIQ 576
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 467 bits (1205), Expect = e-152
Identities = 159/583 (27%), Positives = 276/583 (47%), Gaps = 15/583 (2%)
Query: 652 RLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAK----SHSEMQSRIRTY 707
R L P + + I + L I I + ++
Sbjct: 4 RYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAI 63
Query: 708 SLIFCSLSLISLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALC 767
+ ++ ++ Y + ++ IR ++ + A ++ N G +
Sbjct: 64 GIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYA--NNQVGQVI 121
Query: 768 SRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTR 827
SR+ N+ K + + + + IA+ + + KL + + + P IL Y
Sbjct: 122 SRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Query: 828 KVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKS 887
L ++ +A E V +V SF + FD+ +A K +
Sbjct: 182 FGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241
Query: 888 WLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVST-GKVIAEAGSM 946
+ +T + + G L G I+ G + F + + +
Sbjct: 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLA-AFVGYLELLFGPLRRLVAS 300
Query: 947 TSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPD 1006
+ L + ++ VF+++D I A ++ G+I++ V F Y +
Sbjct: 301 FTTLTQSFASMDRVFQLIDEDYDIKNGVGAQP------IEIKQGRIDIDHVSFQYNDN-E 353
Query: 1007 ALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWY 1066
A +L+ ++ ++ G +V VG SG GKST+I LI RFYDV G + +DG ++++
Sbjct: 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSL 413
Query: 1067 RKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGE 1126
R LV Q+ ++++ +++NI+ G+ A++ EVVEAA+ ANAH+FI +L GY+TE GE
Sbjct: 414 RNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGE 473
Query: 1127 RGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVA 1186
RGV+LSGGQ+QR++IAR + NP IL+LDEATSALD++SE ++QEALD + RTT++VA
Sbjct: 474 RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVA 533
Query: 1187 HRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLATLQ 1229
HRL+TI D I ++ +G +VE GT+ +L +GA+ +L ++Q
Sbjct: 534 HRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQ 576
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 457 bits (1179), Expect = e-152
Identities = 98/255 (38%), Positives = 147/255 (57%), Gaps = 4/255 (1%)
Query: 342 DTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIA 401
+ L ++G ++F+ V F+YP+ P+ VL+ + GK ALVG +GSGKST A
Sbjct: 4 LSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAA 63
Query: 402 LVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLD-ATM 460
L+Q Y G V +DG + + ++ ++ V QE LFG S ++NI +G TM
Sbjct: 64 LLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTM 123
Query: 461 DEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEA 520
+E+ A A + AH+FI P+GY+T+VGE G LSGGQ+Q +A+ARA+I+ P +L+LD A
Sbjct: 124 EEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNA 183
Query: 521 TSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDL 578
TSALD+ ++ VQ L ++ RT L++ +LS A I + G + E GTH L
Sbjct: 184 TSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQL 243
Query: 579 INRIDGHYAKMAKLQ 593
+ R G Y M +
Sbjct: 244 MER-GGCYRSMVEAL 257
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 426 bits (1098), Expect = e-140
Identities = 91/252 (36%), Positives = 139/252 (55%), Gaps = 3/252 (1%)
Query: 982 GSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQ 1041
+ G ++ + V FAYP+ P+ VL+ + + PG LVG +G GKSTV L+Q
Sbjct: 7 SLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ 66
Query: 1042 RFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLD-ASENEV 1100
Y G V +DG + + D H+ A V QEP+++ + R+NI +G + E+
Sbjct: 67 NLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEI 126
Query: 1101 VEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSA 1160
A + AH+FIS GY+TE GE G QLSGGQRQ +A+ARA+IR P +L+LD ATSA
Sbjct: 127 TAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSA 186
Query: 1161 LDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHM 1218
LD ++ VQ L RT +++ +L+ ++ I + +G V E+GT+ QL
Sbjct: 187 LDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER 246
Query: 1219 RGAFFNLATLQS 1230
G + ++ +
Sbjct: 247 GGCYRSMVEALA 258
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 435 bits (1121), Expect = e-144
Identities = 111/244 (45%), Positives = 162/244 (66%), Gaps = 1/244 (0%)
Query: 350 EVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDA 409
+I F +++F Y ++L + NL +K G+ + +VG SGSGKST L+QRFY
Sbjct: 3 HHHHDITFRNIRFRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP 61
Query: 410 DDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATA 469
++G V IDG D+ W+RR++G+V Q++ L SI DNI ++++VI AA
Sbjct: 62 ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKL 121
Query: 470 ANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESE 529
A AH+FI +L EGY T VGE+GA LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE
Sbjct: 122 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 181
Query: 530 TLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKM 589
++ + + GRT +++AH+LSTV+NAD I V++ G +VE G H +L++ + Y+ +
Sbjct: 182 HVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Query: 590 AKLQ 593
+LQ
Sbjct: 242 YQLQ 245
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 394 bits (1014), Expect = e-129
Identities = 106/246 (43%), Positives = 151/246 (61%), Gaps = 2/246 (0%)
Query: 986 QKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD 1045
I R + F Y ++L ++ +K G +G+VG+SG GKST+ LIQRFY
Sbjct: 2 HHHHHDITFRNIRFRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60
Query: 1046 VEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAAR 1105
E G V +DG D+ D +W R+ +V Q+ V+ +I DNI S +V+ AA+
Sbjct: 61 PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAK 120
Query: 1106 AANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQS 1165
A AH+FIS L++GY T GE+G LSGGQRQRIAIARA++ NP IL+ DEATSALD +S
Sbjct: 121 LAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES 180
Query: 1166 EQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQL-THMRGAFFN 1224
E V+ + +I GRT I++AHRL+T+K D I ++ G++VE+G + +L + +
Sbjct: 181 EHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 240
Query: 1225 LATLQS 1230
L LQS
Sbjct: 241 LYQLQS 246
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 406 bits (1047), Expect = e-133
Identities = 99/242 (40%), Positives = 150/242 (61%), Gaps = 4/242 (1%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+ HV F+Y +L+D + + + +A G SG GKST +L++RFY G +
Sbjct: 2 LSARHVDFAYDDSEQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFG-KLDATMDEVIAAATAANAH 473
IDG I + L+ R ++G VSQ+ A+ +I++N+ +G + D T +++ A A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 474 NFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQ 533
+F+ +P+ T+VGERG +SGGQ+QR+AIARA ++NP IL+LDEAT++LDSESE++VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 534 NALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQ 593
ALD GRTTLV+AH+LST+ +AD I ++ G + G HN+L+ YAK Q
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238
Query: 594 RQ 595
Sbjct: 239 LT 240
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 380 bits (979), Expect = e-124
Identities = 97/239 (40%), Positives = 145/239 (60%), Gaps = 3/239 (1%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
+ R VDFAY +LR S E +P + + G SG GKST+ L++RFY G +
Sbjct: 2 LSARHVDFAYDDSEQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFG-KLDASENEVVEAARAANAH 1110
+DG + + + +R VSQ+ I AG IR+N+ +G + D ++ ++ + A A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 1111 EFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQ 1170
F+ ++ D TE GERGV++SGGQRQR+AIARA +RNP IL+LDEAT++LD +SE +VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 1171 EALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLATLQ 1229
+ALD +M GRTT+V+AHRL+TI D I + G++ G + +L + + Q
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 400 bits (1031), Expect = e-131
Identities = 108/258 (41%), Positives = 166/258 (64%), Gaps = 3/258 (1%)
Query: 338 IDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKS 397
++ + IEF V FSYP + + LK N + +G + ALVG +GSGKS
Sbjct: 2 LESFSLTSH-EKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKS 60
Query: 398 TAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLD 457
T L+ RFYDA+ G ++I G ++ + +R +G+V Q+ LF +IK NI++GKLD
Sbjct: 61 TIAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLD 119
Query: 458 ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLL 517
AT +EVI A +A ++FI LP+ ++T VG +G LSGG++QRIAIAR ++K+P I++
Sbjct: 120 ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIF 179
Query: 518 DEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHND 577
DEATS+LDS++E L Q A++ RT +++AH+LST+ +A+ I +++ G +VE GTH D
Sbjct: 180 DEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKD 239
Query: 578 LINRIDGHYAKMAKLQRQ 595
L+ +G YA+M +Q
Sbjct: 240 LLKL-NGEYAEMWNMQSG 256
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 360 bits (926), Expect = e-116
Identities = 93/248 (37%), Positives = 163/248 (65%), Gaps = 1/248 (0%)
Query: 983 SKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQR 1042
S +K IE V+F+YP + + L+ + + GT+ LVG +G GKST+ L+ R
Sbjct: 9 SHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYR 68
Query: 1043 FYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVE 1102
FYD +G +++ G +V + + + R +V Q+ +++ I+ NI++GKLDA++ EV++
Sbjct: 69 FYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIK 127
Query: 1103 AARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALD 1162
A ++A ++FI +L ++T G +G++LSGG+RQRIAIAR ++++P I++ DEATS+LD
Sbjct: 128 ATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLD 187
Query: 1163 VQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAF 1222
++E + Q+A++ + RT I++AHRL+TI +SI L+ G++VE+GT+ L + G +
Sbjct: 188 SKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEY 247
Query: 1223 FNLATLQS 1230
+ +QS
Sbjct: 248 AEMWNMQS 255
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 403 bits (1037), Expect = e-127
Identities = 173/546 (31%), Positives = 290/546 (53%), Gaps = 51/546 (9%)
Query: 77 LYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVI 136
L +Y +++ +L+G S+ V ++R + E + R VGFFD ++I
Sbjct: 83 LGTIYALTSLL--FWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRT---PHGDII 137
Query: 137 NSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLIIPGMIY 196
+ + D I +L + F + + LSLV L I+P +
Sbjct: 138 SRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVT-----LSIVPLTVL 192
Query: 197 G-KYLIYLSKKAYKEY----GKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKL 251
+ + ++K + E G+ N I+E+ +S + + F+ E + +++++ + +S K+
Sbjct: 193 ITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKV 252
Query: 252 GIKQGTAKGLAVGSTG-LSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFI-------- 302
G K G+ ++ +A ++ +G L + T G I +FI
Sbjct: 253 GTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTI----ATFIGYSRQFTR 308
Query: 303 ----LSGL--SLGSALPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIE 356
LS + AL AS A RIF+ +D E D D L EVRGEIE
Sbjct: 309 PLNELSNQFNMIQMAL--------AS--AERIFEILDLEEEKDDPDAV--ELREVRGEIE 356
Query: 357 FEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRI 416
F++V FSY VLKD +K G+ VALVG +GSGK+T + L+ RFYD D G + +
Sbjct: 357 FKNVWFSY--DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILV 414
Query: 417 DGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFI 476
DG+DIR+++ +R +G+V Q+ LF T++K+N+ +G AT +E+ AA ++ +FI
Sbjct: 415 DGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFI 474
Query: 477 RQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNAL 536
+ LPEGYET + + G LS GQ+Q +AI RA + NP IL+LDEATS +D+++E +Q A+
Sbjct: 475 KHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAM 534
Query: 537 DQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQF 596
+ G+T++++AH+L+T++NADLI V+ +G +VE+G H++LI + G Y ++ Q+
Sbjct: 535 WKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK-RGFYYEL--FTSQY 591
Query: 597 SCDDQE 602
++
Sbjct: 592 GLVVEK 597
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 393 bits (1013), Expect = e-123
Identities = 170/592 (28%), Positives = 291/592 (49%), Gaps = 34/592 (5%)
Query: 648 PSFFRLLSLNAPEWKQGLIGSLSAIAVGSVQPTYA-LTIGGMISAFFAKSHSEMQSRIRT 706
+ RLL P LI + V S+ + IG I F +
Sbjct: 23 ATLRRLLGYLRPHTFT-LIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRF---DLLPR 78
Query: 707 YSLIFCSLSLISLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGAL 766
Y LI ++ ++ LQ + + R+R + EK+ +FD + G +
Sbjct: 79 YMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFD--RTPHGDI 136
Query: 767 CSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYT 826
SR+ N+ + +++ + + +A A+IM V L++V +++ PLT+ T
Sbjct: 137 ISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTV--LIT 194
Query: 827 RKVLLSSVSTNFVKAQNRST-----QIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRK 881
+ V SS + + R I E + ++ F K ++ FD E RK
Sbjct: 195 QIV--SSQTRKYFYENQRVLGQLNGIIE-EDISGLTVIKLFTREEKEMEKFDRVNESLRK 251
Query: 882 QARKKSWLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVST-GKVI 940
K +G+ + + +AL +GG L K I+ G + TF + +
Sbjct: 252 VGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIA-TFIGYSRQFTRPL 310
Query: 941 AEAGSMTSDLAKGSTAVAS---VFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRV 997
E + + + A+AS +F+ILD + +L+++ G+IE + V
Sbjct: 311 NELSNQFNMIQ---MALASAERIFEILDLEEEKDDPDAV-------ELREVRGEIEFKNV 360
Query: 998 DFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMD 1057
F+Y VL+ + +KPG V LVG +G GK+T++ L+ RFYDV++G + VDG+D
Sbjct: 361 WFSY--DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGID 418
Query: 1058 VRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLK 1117
+R++ R +V Q+ ++++ +++N+ +G A++ E+ EAA+ ++ FI L
Sbjct: 419 IRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLP 478
Query: 1118 DGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM 1177
+GYET + G LS GQRQ +AI RA + NP IL+LDEATS +D ++E+ +Q A+ ++M
Sbjct: 479 EGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM 538
Query: 1178 MGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLATLQ 1229
G+T+I++AHRLNTIK D I ++ DG +VE G + +L RG ++ L T Q
Sbjct: 539 EGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQ 590
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 387 bits (997), Expect = e-125
Identities = 135/292 (46%), Positives = 183/292 (62%), Gaps = 8/292 (2%)
Query: 319 TEASIAASRIFDRIDRVPEI-DGEDTKGLVLDEVRGEIEFEHVKFSY-PSRPDSIVLKDF 376
+ I +FD + E+ D L +G IEFE+V FSY R L+D
Sbjct: 19 SHMFIDMENMFDLLKEETEVKDLPGAG--PLRFQKGRIEFENVHFSYADGRE---TLQDV 73
Query: 377 NLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLV 436
+ V G+++ALVG SG+GKST + L+ RFYD G +RIDG DI ++ +R +G+V
Sbjct: 74 SFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVV 133
Query: 437 SQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSG 496
Q+ LF +I DNI +G++ A DEV AAA AA H+ I PEGY T+VGERG LSG
Sbjct: 134 PQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSG 193
Query: 497 GQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVR 556
G+KQR+AIAR I+K P I+LLDEATSALD+ +E +Q +L + RTT+VVAH+LSTV
Sbjct: 194 GEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVV 253
Query: 557 NADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQFSCDDQETIPETH 608
NAD I V+ +GC+VE G H L++R G YA M +LQ+ ++T P+T
Sbjct: 254 NADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQQGQEETSEDTKPQTM 304
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 338 bits (869), Expect = e-107
Identities = 111/271 (40%), Positives = 167/271 (61%), Gaps = 10/271 (3%)
Query: 960 VFKILDRQSLIPGSSQAGDGTRGSKLQKISGKIEMRRVDFAY-PSRPDALVLRQFSMEVK 1018
+F +L ++ + AG L+ G+IE V F+Y R L+ S V
Sbjct: 28 MFDLLKEETEVKDLPGAGP------LRFQKGRIEFENVHFSYADGRE---TLQDVSFTVM 78
Query: 1019 PGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPV 1078
PG ++ LVG SG GKST++ L+ RFYD+ G +R+DG D+ ++ R H +V Q+ V
Sbjct: 79 PGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTV 138
Query: 1079 IYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQR 1138
++ I DNI +G++ A +EV AA+AA H+ I + +GY T+ GERG++LSGG++QR
Sbjct: 139 LFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQR 198
Query: 1139 IAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSI 1198
+AIAR I++ P I+LLDEATSALD +E+ +Q +L ++ RTTIVVAHRL+T+ D I
Sbjct: 199 VAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQI 258
Query: 1199 ALVADGRVVERGTYAQLTHMRGAFFNLATLQ 1229
++ DG +VERG + L G + ++ LQ
Sbjct: 259 LVIKDGCIVERGRHEALLSRGGVYADMWQLQ 289
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 330 bits (848), Expect = e-100
Identities = 148/509 (29%), Positives = 253/509 (49%), Gaps = 24/509 (4%)
Query: 82 LGLAV--MVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGF-FDSQDATTTSEVINS 138
L +A+ V S S+ +R + R+ + F + + TS +I
Sbjct: 70 LIVALIGAVGGIGCTVFASYASQNFGADLR----RDLFRKVLSFSISNVNRFHTSSLITR 125
Query: 139 ISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLIIPGMIYGK 198
++ D + +Q L+ + I V +F+ G+ + + +LS V + +++ + K
Sbjct: 126 LTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTK 185
Query: 199 YLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLGIKQGTA 258
L +K + + N +V + L ++ V +F E + + +S + I +
Sbjct: 186 KGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSL 245
Query: 259 KGLAVGSTGL--SFAIWAFLAWYGSHLVMFKGETGGKIYAAGISF------ILSGLSLGS 310
A+ + + A L W+G LV G I +++ I+ L +
Sbjct: 246 IVFALPLFIFIVNMGMIAVL-WFGGVLVRNNQMEIGSI----MAYTNYLMQIMFSLMMIG 300
Query: 311 ALPELKYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDS 370
+ L + AS +A R+ + ++ P I+ E L L V G + FE+V+F Y
Sbjct: 301 NI--LNFIVRASASAKRVLEVLNEKPAIE-EADNALALPNVEGSVSFENVEFRYFE-NTD 356
Query: 371 IVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVR 430
VL N VK G VA++G +GSGKST + L+ R D + G V +D +D+R ++LK +R
Sbjct: 357 PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLR 416
Query: 431 REMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGER 490
+ V QE LF +IK+N+ +G+ DAT DE++ AA A H+FI LPEGY+++V
Sbjct: 417 GHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERG 476
Query: 491 GALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAH 550
G SGGQKQR++IARA++K P +L+LD+ TS++D +E + + L + + G TT ++
Sbjct: 477 GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQ 536
Query: 551 KLSTVRNADLIAVVDNGCLVEIGTHNDLI 579
K+ T AD I V+ G + GTH +L+
Sbjct: 537 KIPTALLADKILVLHEGKVAGFGTHKELL 565
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 317 bits (815), Expect = 1e-95
Identities = 140/524 (26%), Positives = 261/524 (49%), Gaps = 29/524 (5%)
Query: 702 SRIRTYSLIFCSLSLISLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQN 761
S + ++ ++LI + +Y +R + K+L+F + + +
Sbjct: 60 SLVLKTGILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVN--RF 117
Query: 762 SSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTI 821
+ +L +RL+N+ + +++LV + ++V+ ++M + + KL+ V+I + P +
Sbjct: 118 HTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIV 177
Query: 822 LCFYTRKVLLSSVSTNFVKAQ------NRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEA 875
L F L + F K Q NR + E ++ R+V +F + F +A
Sbjct: 178 LLFV---WLTKKGNPLFRKIQESTDEVNRVVR---ENLLGVRVVRAFRREEYENENFRKA 231
Query: 876 QEEPRKQARKKSWLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFK----TFF 931
E R+ L + + M W+GG LV+ Q+ G +
Sbjct: 232 NESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQ 291
Query: 932 ILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRGSKLQKISGK 991
I+ S + G++ + + + S + V ++L+ + I + L + G
Sbjct: 292 IMFS----LMMIGNILNFIVRASASAKRVLEVLNEKPAIE------EADNALALPNVEGS 341
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
+ V+F Y VL + VKPG+ V ++G++G GKST++ LI R D E+G V
Sbjct: 342 VSFENVEFRYFE-NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRV 400
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHE 1111
VD +DVR + + R H + V QE V+++G I++N+ +G+ DA+++E+VEAA+ A H+
Sbjct: 401 EVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHD 460
Query: 1112 FISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQE 1171
FI SL +GY++ G SGGQ+QR++IARA+++ P +L+LD+ TS++D +E+ + +
Sbjct: 461 FIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILD 520
Query: 1172 ALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQL 1215
L R G TT ++ ++ T D I ++ +G+V GT+ +L
Sbjct: 521 GLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKEL 564
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 194 bits (494), Expect = 2e-54
Identities = 58/239 (24%), Positives = 112/239 (46%), Gaps = 13/239 (5%)
Query: 990 GKIEMRRVDFAYPSRPDA-LVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQ 1048
G++ ++ + Y +L S + PG VGL+G++G GKST++ R + E
Sbjct: 18 GQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE- 74
Query: 1049 GSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDA----SENEVVEAA 1104
G +++DG+ + + +RK ++ Q+ I++G R N LD S+ E+ + A
Sbjct: 75 GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKN-----LDPNAAHSDQEIWKVA 129
Query: 1105 RAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQ 1164
I + + G LS G +Q + +AR+++ ILLLDE ++ LD
Sbjct: 130 DEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPV 189
Query: 1165 SEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFF 1223
+ Q+++ L + T I+ R+ + + D ++ + +V + + +L H F
Sbjct: 190 TYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRF 248
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 192 bits (489), Expect = 9e-54
Identities = 55/245 (22%), Positives = 113/245 (46%), Gaps = 13/245 (5%)
Query: 352 RGEIEFEHVKFSYPSRPDS-IVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDAD 410
G++ + + Y +L++ + + G+ V L+G +GSGKST ++ R + +
Sbjct: 17 GGQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE 74
Query: 411 DGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDA----TMDEVIAA 466
G ++IDGV + L+ R+ G++ Q+ +F + + N LD + E+
Sbjct: 75 -GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKN-----LDPNAAHSDQEIWKV 128
Query: 467 ATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDS 526
A + I Q P + + + G +LS G KQ + +AR+++ ILLLDE ++ LD
Sbjct: 129 ADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDP 188
Query: 527 ESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHY 586
+ +++ L QA T ++ ++ + D V++ + + + +L + +
Sbjct: 189 VTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRF 248
Query: 587 AKMAK 591
Sbjct: 249 VAGFI 253
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 171 bits (435), Expect = 2e-48
Identities = 58/240 (24%), Positives = 116/240 (48%), Gaps = 20/240 (8%)
Query: 989 SGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQ 1048
+ ++ M V + VL+ + +++ G + + G +G GK++++ +I + +
Sbjct: 4 TTEVVMENVTAFW-EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 1049 GSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGK-LDASE-NEVVEAARA 1106
G ++ G + SQ I G I++NI+FG D V++A
Sbjct: 63 GKIKHSG-------------RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKAC-- 107
Query: 1107 ANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQ-S 1165
+ S + GE G+ LSGGQR RI++ARA+ ++ + LLD LDV
Sbjct: 108 QLEEDI-SKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE 166
Query: 1166 EQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNL 1225
+++ + + ++M +T I+V ++ +KK D I ++ +G GT+++L +++ F +
Sbjct: 167 KEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSK 226
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 3e-44
Identities = 61/244 (25%), Positives = 115/244 (47%), Gaps = 27/244 (11%)
Query: 352 RGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADD 411
E+ E+V + + VLKD N K++ G+ +A+ G++G+GK++ + ++ + +
Sbjct: 4 TTEVVMENVTAFW-EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 412 GIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDE-----VIAA 466
G ++ G + SQ + +IK+NI+FG + DE VI A
Sbjct: 63 GKIKHSG-------------RISFCSQFSWIMPGTIKENIIFGV---SYDEYRYRSVIKA 106
Query: 467 ATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDS 526
+ + E +GE G LSGGQ+ RI++ARA+ K+ + LLD LD
Sbjct: 107 C--QLEEDI-SKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 163
Query: 527 E-SETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGH 585
+ + ++ + + +T ++V K+ ++ AD I ++ G GT ++L N
Sbjct: 164 LTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL-QPD 222
Query: 586 YAKM 589
++
Sbjct: 223 FSSK 226
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 164 bits (418), Expect = 6e-46
Identities = 71/241 (29%), Positives = 121/241 (50%), Gaps = 22/241 (9%)
Query: 990 GKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQG 1049
I +R F + +R D L + + G V +VG+ GCGKS+++ + D +G
Sbjct: 2 NSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 1050 SVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGK-LDASE-NEVVEAARAA 1107
V + G A V Q+ I ++R+NI+FG L+ V++A A
Sbjct: 61 HVAIKG-------------SVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQAC--A 105
Query: 1108 NAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQ-SE 1166
+ L G TE GE+GV LSGGQ+QR+++ARA+ N I L D+ SA+D +
Sbjct: 106 LLPDL-EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 164
Query: 1167 QVVQEALDR--IMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFN 1224
+ + + ++ +T I+V H ++ + ++D I +++ G++ E G+Y +L GAF
Sbjct: 165 HIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAE 224
Query: 1225 L 1225
Sbjct: 225 F 225
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 6e-43
Identities = 72/247 (29%), Positives = 124/247 (50%), Gaps = 29/247 (11%)
Query: 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDG 412
I + F++ +R D L + G VA+VG G GKS+ ++ + D +G
Sbjct: 2 NSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 413 IVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDE-----VIAAA 467
V I G + V Q+ + S+++NI+FG ++E VI A
Sbjct: 61 HVAIKG-------------SVAYVPQQAWIQNDSLRENILFGC---QLEEPYYRSVIQAC 104
Query: 468 TAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSE 527
A + LP G T++GE+G LSGGQKQR+++ARA+ N I L D+ SA+D+
Sbjct: 105 --ALLPDL-EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH 161
Query: 528 -SETLVQNALDQASL--GRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDG 584
+ + +N + + +T ++V H +S + D+I V+ G + E+G++ +L+ R DG
Sbjct: 162 VGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DG 220
Query: 585 HYAKMAK 591
+A+ +
Sbjct: 221 AFAEFLR 227
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 163 bits (415), Expect = 5e-45
Identities = 57/231 (24%), Positives = 112/231 (48%), Gaps = 18/231 (7%)
Query: 997 VDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGM 1056
+ F+ S VL+ + +++ G + + G +G GK++++ +I + +G ++ G
Sbjct: 41 LSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG- 99
Query: 1057 DVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASE-NEVVEAARAANAHEFISS 1115
+ SQ I G I++NI+ D V++A + S
Sbjct: 100 ------------RISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKAC--QLEEDI-SK 144
Query: 1116 LKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQ-SEQVVQEALD 1174
+ GE G+ LSGGQR RI++ARA+ ++ + LLD LDV +++ + +
Sbjct: 145 FAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVC 204
Query: 1175 RIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNL 1225
++M +T I+V ++ +KK D I ++ +G GT+++L ++R F +
Sbjct: 205 KLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSK 255
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 1e-42
Identities = 66/312 (21%), Positives = 129/312 (41%), Gaps = 25/312 (8%)
Query: 319 TEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNL 378
+ + + + E K + + + + FS S + VLKD N
Sbjct: 1 STTEVVMENVTAFWEEGFGELFEKAKQNN-NNRKTSNGDDSLSFSNFSLLGTPVLKDINF 59
Query: 379 KVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQ 438
K++ G+ +A+ G++G+GK++ + ++ + +G ++ G + SQ
Sbjct: 60 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQ 106
Query: 439 EHALFGTSIKDNIMFGKLDATM-DEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGG 497
+ +IK+NI+ D VI A + + E +GE G LSGG
Sbjct: 107 NSWIMPGTIKENIIGVSYDEYRYRSVIKAC--QLEEDI-SKFAEKDNIVLGEGGITLSGG 163
Query: 498 QKQRIAIARAIIKNPVILLLDEATSALDSE-SETLVQNALDQASLGRTTLVVAHKLSTVR 556
Q+ RI++ARA+ K+ + LLD LD + + ++ + + +T ++V K+ ++
Sbjct: 164 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 223
Query: 557 NADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQFSCDDQETIPETHVSSVTRSS 616
AD I ++ G GT ++L N ++ CD + +S+ +
Sbjct: 224 KADKILILHEGSSYFYGTFSELQNL-RPDFSSKLM-----GCDSFDQFSAERRNSILTET 277
Query: 617 GGRLSAARSSPA 628
R S +P
Sbjct: 278 LHRFSLEGDAPV 289
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 1e-40
Identities = 43/233 (18%), Positives = 98/233 (42%), Gaps = 24/233 (10%)
Query: 355 IEFEHVKFSYPSRP-DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI 413
I+ ++V + + + L++ NL+V G+ V ++G +GSGK+T + + G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLP-YSGN 59
Query: 414 VRIDGVDIRRLQLKWVRREMGLVSQ--EHALFGTSIKDNIMFGKLDATMDEVIAAATAAN 471
+ I+G+++R++ R + + E G ++ D + + +D +
Sbjct: 60 IFINGMEVRKI-----RNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114
Query: 472 AHNFIRQLPEGYETK-VGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESET 530
+L E + + + LS GQ + + A+ P I+ LDE +D+
Sbjct: 115 L-----KLGEEILRRKLYK----LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRH 165
Query: 531 LVQNALDQASLGRTTLVVAHKLSTV-RNADLIAVV-DNGCLVEIGTHNDLINR 581
++ + + G+ ++V H+L + + A L + ++L+
Sbjct: 166 VISRYIKE--YGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 3e-38
Identities = 45/224 (20%), Positives = 90/224 (40%), Gaps = 27/224 (12%)
Query: 992 IEMRRVDFAYPSRP-DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
I+++ V + + L ++EV G V ++G +G GK+T++ I G+
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYS-GN 59
Query: 1051 VRVDGMDVRELDVHWYRKHTALVSQEPVIYAG--NIRDNIVFGK--LDASENEVVEAARA 1106
+ ++GM+VR++ R + + P Y + D + + + +E +A
Sbjct: 60 IFINGMEVRKI-----RNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114
Query: 1107 ANAHEFISSLKDGYETECGERGV-QLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQS 1165
L + R + +LS GQ + + A+ P I+ LDE +D
Sbjct: 115 LK-------LGEEIL----RRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR 163
Query: 1166 EQVVQEALDRIMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVE 1208
V+ + G+ I+V H L+ + + A G ++
Sbjct: 164 RHVISRYIKEY--GKEGILVTHELDMLNLYKEYKAYFLVGNRLQ 205
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 5e-38
Identities = 58/233 (24%), Positives = 101/233 (43%), Gaps = 26/233 (11%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
++ E + ++Y + LK N+ +K G+ A++G +G GKST G +
Sbjct: 8 LKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 415 RIDGVDI--RRLQLKWVRREMGLVSQ--EHALFGTSIKDNIMFGKLDATMDE------VI 464
D I R + +R +G+V Q ++ LF S+ ++ FG ++ + E V
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125
Query: 465 AAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSAL 524
A + + LS GQK+R+AIA ++ P +L+LDE T+ L
Sbjct: 126 NALKRTGIEHLKDKPT-----------HCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 525 DSESETLVQNALD--QASLGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIGT 574
D + + L Q LG T ++ H + V D + V+ G ++ G
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 2e-30
Identities = 53/230 (23%), Positives = 107/230 (46%), Gaps = 20/230 (8%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
+++ +++ Y AL + +M +K G ++G +G GKST+ G +
Sbjct: 8 LKVEELNYNYSDGTHAL--KGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 1052 RVDGMDV--RELDVHWYRKHTALVSQEPV--IYAGNIRDNIVFG--KLDASENEVVEAAR 1105
D + + R+ +V Q+P +++ ++ ++ FG + E+E+ +
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125
Query: 1106 AANAHEFISSLKDGYETECGERGV-QLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQ 1164
A I LKD + LS GQ++R+AIA ++ P +L+LDE T+ LD
Sbjct: 126 NALKRTGIEHLKD--------KPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPM 177
Query: 1165 SEQVVQEALDRIM--MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGT 1211
+ + L + +G T I+ H ++ + D++ ++ +GRV+ +G
Sbjct: 178 GVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 5e-38
Identities = 64/252 (25%), Positives = 115/252 (45%), Gaps = 27/252 (10%)
Query: 355 IEFEHVKFSYPSRP--DSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDG 412
IE +V + + L++ +L + G+ + + G +GSGKST + +V + G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 413 IVRIDGVDIRRLQLKWVRREMGLVSQ--EHALFGTSIKDNIMFG----KLDATMDEVIAA 466
V DG + +RR +G+ Q E F + D + F D ++
Sbjct: 63 DVLYDGERKK---GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKK 119
Query: 467 ATAA---NAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSA 523
A + +F ++P LSGG+K+R+AIA I+ P IL+LDE
Sbjct: 120 AMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVAIASVIVHEPDILILDEPLVG 168
Query: 524 LDSESETLVQNALDQ-ASLGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIGTHNDLINR 581
LD E +T + +++ +LG+T ++++H + TV + D + V++ G V GT + + +
Sbjct: 169 LDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228
Query: 582 IDGHYAKMAKLQ 593
D + L
Sbjct: 229 YDPRFFTSKMLV 240
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 2e-29
Identities = 55/230 (23%), Positives = 106/230 (46%), Gaps = 19/230 (8%)
Query: 991 KIEMRRVDFAYPSRP--DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQ 1048
+IE+ V + + L S+ + G + + G +G GKST++ ++ +
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 1049 GSVRVDGMDVRELDVHWYRKHTALVSQEPV--IYAGNIRDNIVFG--KLDASENEVVEAA 1104
G V DG + ++ R++ + Q P +A + D + F + V
Sbjct: 62 GDVLYDGERKKGYEI---RRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPV---P 115
Query: 1105 RAANAHEFISSLKDGYETECGERGV-QLSGGQRQRIAIARAIIRNPTILLLDEATSALDV 1163
A EF+ D ++ +R LSGG+++R+AIA I+ P IL+LDE LD
Sbjct: 116 LVKKAMEFVGLDFDSFK----DRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDR 171
Query: 1164 QSEQVVQEALDRI-MMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGT 1211
+ + + +++ +G+T I+++H + T+ D + ++ G+ V GT
Sbjct: 172 EGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGT 221
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 8e-35
Identities = 77/231 (33%), Positives = 115/231 (49%), Gaps = 24/231 (10%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
I+ +K S+ VLK N+ ++ G+ V ++G SGSGKST + + D D+G +
Sbjct: 25 IDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81
Query: 415 RIDGVDI--RRLQLKWVRREMGLVSQEHALFG-TSIKDNIMFGKLDAT-MDEVIAAATAA 470
IDG+++ + L VR E+G+V Q LF ++ +NI + A A A
Sbjct: 82 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKA- 140
Query: 471 NAHNFIRQLPE--GYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSES 528
+L + G + K LSGGQ QR+AIARA+ P I+L DE TSALD E
Sbjct: 141 ------MELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPE- 193
Query: 529 ETLVQNALDQ----ASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGT 574
+V L A+ G T +VV H++ R D + +D G ++E G
Sbjct: 194 --MVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGK 242
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 1e-25
Identities = 58/218 (26%), Positives = 101/218 (46%), Gaps = 29/218 (13%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDV--RELDVHWY 1066
VL+ ++ ++ G V ++G SG GKST + + D ++G + +DG+++ ++ +++
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 1067 RKHTALVSQE----PVIYAGNIRDNIVFGK---LDASENEVVEAARAANAHEFISSLKDG 1119
R+ +V Q P + + +NI + A +
Sbjct: 99 REEVGMVFQRFNLFPHM---TVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHA 155
Query: 1120 YETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM- 1178
Y LSGGQ QR+AIARA+ P I+L DE TSALD ++V E L +M
Sbjct: 156 YPD-------SLSGGQAQRVAIARALAMEPKIMLFDEPTSALD---PEMVGEVLS-VMKQ 204
Query: 1179 ----GRTTIVVAHRLNTIKKL-DSIALVADGRVVERGT 1211
G T +VV H + +++ D + + G ++E G
Sbjct: 205 LANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGK 242
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 1e-34
Identities = 72/234 (30%), Positives = 118/234 (50%), Gaps = 17/234 (7%)
Query: 355 IEFEHVKFSYPSRPDSI-VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI 413
I+ ++ + +I L + +L V AG+ ++GASG+GKST I V +G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 414 VRIDGVDIRRL---QLKWVRREMGLVSQEHALFGT-SIKDNIMFGKLDATMDEVIAAATA 469
V +DG ++ L +L RR++G++ Q L + ++ N+ L+ +
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP-LE------LDNTPK 137
Query: 470 ANAHNFIRQLPE--GYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSE 527
+ +L G K + LSGGQKQR+AIARA+ NP +LL D+ATSALD
Sbjct: 138 DEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPA 197
Query: 528 SETLVQNALDQ--ASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDL 578
+ + L LG T L++ H++ V+ D +AV+ NG L+E T +++
Sbjct: 198 TTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 8e-30
Identities = 66/263 (25%), Positives = 114/263 (43%), Gaps = 37/263 (14%)
Query: 973 SSQAGDGTRGSKLQKISGKIEMRRVDFAYPSRPDAL-VLRQFSMEVKPGTSVGLVGKSGC 1031
+ G I++ + + + L S+ V G G++G SG
Sbjct: 6 HHHHHHHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGA 65
Query: 1032 GKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK----------HTALVSQEPVIYA 1081
GKST+I + +GSV VDG ++ L K H L+S
Sbjct: 66 GKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR----- 120
Query: 1082 GNIRDNIVF----GKLDASENEVVEAARAANAHEF--ISSLKDGYETECGERGVQLSGGQ 1135
+ N+ E + R + D Y + LSGGQ
Sbjct: 121 -TVFGNVALPLELDNTPKDEVK----RRVTELLSLVGLGDKHDSYPS-------NLSGGQ 168
Query: 1136 RQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRI--MMGRTTIVVAHRLNTIK 1193
+QR+AIARA+ NP +LL D+ATSALD + + + E L I +G T +++ H ++ +K
Sbjct: 169 KQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVK 228
Query: 1194 KL-DSIALVADGRVVERGTYAQL 1215
++ D +A++++G ++E+ T +++
Sbjct: 229 RICDCVAVISNGELIEQDTVSEV 251
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 8e-34
Identities = 52/237 (21%), Positives = 104/237 (43%), Gaps = 15/237 (6%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
I+ + + + +LK + ++ G L G +G+GK+T + ++ + A G V
Sbjct: 22 IQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 415 RIDGVDIRRL--QLKWVRREMGLVSQEHAL---FGTSIKDNIMFGKLDAT-MDEVIAAAT 468
+ G ++ + VR+ +G VS G + D ++ G + + + I
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138
Query: 469 AANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSES 528
AH ++ + G K + LS G+KQR+ IARA++ P +L+LDE + LD +
Sbjct: 139 RNEAHQLLKLV--GMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIA 196
Query: 529 ETLVQNALD---QASLGRTTLVVAHKLSTVRNA-DLIAVVDNGCLVEIGTHNDLINR 581
+ + LD + + V H + + I ++ +G ++ G D++
Sbjct: 197 RESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTS 253
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 8e-34
Identities = 50/240 (20%), Positives = 102/240 (42%), Gaps = 27/240 (11%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
I++ ++ + +L++ S ++ G L G +G GK+T++ ++ + G+V
Sbjct: 22 IQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 1052 RVDG-------MDVRELDVHWYRKHTALVSQE---PVIYAGNIRDNIVFGKLDASE--NE 1099
+ G + R+H VS + D ++ G + +
Sbjct: 79 NLFGKMPGKVGYSAETV-----RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQD 133
Query: 1100 VVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATS 1159
+ + R AH+ + + G + + LS G++QR+ IARA++ P +L+LDE +
Sbjct: 134 IDDEIRNE-AHQLLKLV--GMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAA 190
Query: 1160 ALDVQSEQVVQEALDRIM---MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
LD + + + LD + I V H + I I L+ DG+ +++G +
Sbjct: 191 GLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDI 250
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 1e-32
Identities = 70/236 (29%), Positives = 116/236 (49%), Gaps = 23/236 (9%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
IEF V+ YP + ++ + +++ G+ V L+G SGSGK+T + L+ G V
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALFG-TSIKDNIMFGKLDATMDEVIAAATAANAH 473
I G + L + +R +GLV Q +ALF ++ DN+ FG L V A
Sbjct: 73 WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFG-L--REKRVPKDEMDARVR 127
Query: 474 NFIR--QLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETL 531
+R +L E Y + LSGGQ+QR+A+ARA+ P +LL DE +A+D++
Sbjct: 128 ELLRFMRL-ESYANR---FPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRE 183
Query: 532 VQNALD--QASLGRTTLVVAH----KLSTVRNADLIAVVDNGCLVEIGTHNDLINR 581
++ + +G T++ V H L AD + V+ G + + GT ++ +
Sbjct: 184 LRTFVRQVHDEMGVTSVFVTHDQEEALEV---ADRVLVLHEGNVEQFGTPEEVYEK 236
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 6e-28
Identities = 63/208 (30%), Positives = 102/208 (49%), Gaps = 30/208 (14%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
IE V+ YP A +R S +++ G VGL+G SG GK+T++ LI +G V
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIYA----GNIRDNIVFG----KLDASENEVVEA 1103
+ G V +L +++ LV Q YA + DN+ FG ++ E
Sbjct: 73 WIGGKRVTDLPPQ--KRNVGLVFQN---YALFQHMTVYDNVSFGLREKRVPKDE------ 121
Query: 1104 ARAANAHEFISSLK-DGYETECGERGV-QLSGGQRQRIAIARAIIRNPTILLLDEATSAL 1161
A E + ++ + Y R +LSGGQ+QR+A+ARA+ P +LL DE +A+
Sbjct: 122 -MDARVRELLRFMRLESYA----NRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAI 176
Query: 1162 DVQSEQVVQEALDRI--MMGRTTIVVAH 1187
D Q + ++ + ++ MG T++ V H
Sbjct: 177 DTQIRRELRTFVRQVHDEMGVTSVFVTH 204
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 2e-32
Identities = 69/255 (27%), Positives = 113/255 (44%), Gaps = 48/255 (18%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+ + Y VLK +L+ +AG ++++G+SGSGKST + + +G +
Sbjct: 7 LHVIDLHKRYGGHE---VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 63
Query: 415 RIDGVDIRRL-------------QLKWVRREMGLVSQEHALFG-TSIKDNIMFGK---LD 457
++G +I + QL+ +R + +V Q L+ ++ +N+M L
Sbjct: 64 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 123
Query: 458 ATMDEVIAAATAANAHNFIRQLPEGYETKVG--ERG-----ALLSGGQKQRIAIARAIIK 510
+ + A Y KVG ER LSGGQ+QR++IARA+
Sbjct: 124 LSKHDARERA-------------LKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAM 170
Query: 511 NPVILLLDEATSALDSESETLVQNAL----DQASLGRTTLVVAHKLSTVRN-ADLIAVVD 565
P +LL DE TSALD E LV L A G+T +VV H++ R+ + + +
Sbjct: 171 EPDVLLFDEPTSALDPE---LVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLH 227
Query: 566 NGCLVEIGTHNDLIN 580
G + E G +
Sbjct: 228 QGKIEEEGDPEQVFG 242
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 1e-23
Identities = 60/243 (24%), Positives = 102/243 (41%), Gaps = 59/243 (24%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVR--------- 1059
VL+ S++ + G + ++G SG GKST + I +G++ V+G ++
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 1060 ----ELDVHWYRKHTALVSQE----PVIYAGNIRDNIVFGK---LDASENEVVEAARA-- 1106
+ + R +V Q + + +N++ L S+++ E A
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHM---TVLENVMEAPIQVLGLSKHDARERALKYL 137
Query: 1107 --------ANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEAT 1158
A Y LSGGQ+QR++IARA+ P +LL DE T
Sbjct: 138 AKVGIDERAQGK---------YPV-------HLSGGQQQRVSIARALAMEPDVLLFDEPT 181
Query: 1159 SALDVQSEQVVQEALDRIMM-----GRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTY 1212
SALD ++V E L IM G+T +VV H + + + + + G++ E G
Sbjct: 182 SALD---PELVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDP 237
Query: 1213 AQL 1215
Q+
Sbjct: 238 EQV 240
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 124 bits (315), Expect = 5e-31
Identities = 65/238 (27%), Positives = 116/238 (48%), Gaps = 32/238 (13%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
IE E + + + L + +LKV++G+ ++G +G+GK+ + L+ F+ D G +
Sbjct: 2 IEIESLSRKW----KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALFG-TSIKDNIMFG----KLDATMDEVIAAATA 469
+DG D+ L + + ++ V Q ++LF ++K N+ FG K+ + +
Sbjct: 58 LLDGKDVTDLSPE--KHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD--PKRVLDTAR 113
Query: 470 ANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESE 529
++ E + LSGG++QR+A+ARA++ NP ILLLDE SALD ++
Sbjct: 114 ------DLKI-EHLLDR---NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQ 163
Query: 530 TLVQNALD--QASLGRTTLVVAH----KLSTVRNADLIAVVDNGCLVEIGTHNDLINR 581
+ L T L + H AD IAVV +G L+++G ++ +
Sbjct: 164 ENAREMLSVLHKKNKLTVLHITHDQTEARIM---ADRIAVVMDGKLIQVGKPEEIFEK 218
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 8e-27
Identities = 60/206 (29%), Positives = 99/206 (48%), Gaps = 31/206 (15%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
IE+ + + L S++V+ G ++G +G GK+ + LI F+ + G +
Sbjct: 2 IEIESLSRKW----KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIYA----GNIRDNIVFG----KLDASENEVVEA 1103
+DG DV +L + A V Q Y+ N++ N+ FG K+ + V++
Sbjct: 58 LLDGKDVTDLSPE--KHDIAFVYQN---YSLFPHMNVKKNLEFGMRMKKIKDPK-RVLDT 111
Query: 1104 ARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDV 1163
AR I L D LSGG++QR+A+ARA++ NP ILLLDE SALD
Sbjct: 112 ARDLK----IEHLLDRNPL-------TLSGGEQQRVALARALVTNPKILLLDEPLSALDP 160
Query: 1164 QSEQVVQEALDRI--MMGRTTIVVAH 1187
++++ +E L + T + + H
Sbjct: 161 RTQENAREMLSVLHKKNKLTVLHITH 186
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 1e-30
Identities = 61/232 (26%), Positives = 107/232 (46%), Gaps = 26/232 (11%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+ H+ S+ + P VL D +L + G+ + ++GASG GK+T + + F D G +
Sbjct: 5 LHIGHLSKSFQNTP---VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 415 RIDGVDIRRLQLKWV---RREMGLVSQEHALF-GTSIKDNIMFGKLDATMDEVIAAATAA 470
+ G I + + R +G + QE LF ++ NI +G L + A
Sbjct: 62 SLSGKTIFS-KNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYG-L--GNGKGRTAQERQ 117
Query: 471 NAHNFIR--QLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSES 528
+ + + LSGGQ+QR A+ARA+ +P ++LLDE SALD +
Sbjct: 118 RIEAMLELTGI-SELAGR---YPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQL 173
Query: 529 ETLVQNALD--QASLGRTTLVVAHK----LSTVRNADLIAVVDNGCLVEIGT 574
++ + + G++ + V+H L AD IAV+ G +++ +
Sbjct: 174 RRQIREDMIAALRANGKSAVFVSHDREEALQY---ADRIAVMKQGRILQTAS 222
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 5e-28
Identities = 58/240 (24%), Positives = 108/240 (45%), Gaps = 42/240 (17%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
+ + + ++ + P VL S+ + PG + ++G SGCGK+T++ + F + G +
Sbjct: 5 LHIGHLSKSFQNTP---VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 1052 RVDGMDVRELDVHW--YRKHTALVSQEPVIYA----GNIRDNIVFG----KLDASENEVV 1101
+ G + + + + + QE + NI +G K ++
Sbjct: 62 SLSGKTIFSKNTNLPVRERRLGYLVQE---GVLFPHLTVYRNIAYGLGNGKGRTAQ---- 114
Query: 1102 EAARAANAHEFI--SSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATS 1159
E R E S L Y +LSGGQ+QR A+ARA+ +P ++LLDE S
Sbjct: 115 ERQRIEAMLELTGISELAGRYPH-------ELSGGQQQRAALARALAPDPELILLDEPFS 167
Query: 1160 ALDVQSEQVVQEALDRIM--MGRTTIVVAH------RLNTIKKLDSIALVADGRVVERGT 1211
ALD Q + ++E + + G++ + V+H + D IA++ GR+++ +
Sbjct: 168 ALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYA-----DRIAVMKQGRILQTAS 222
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 2e-29
Identities = 65/210 (30%), Positives = 102/210 (48%), Gaps = 20/210 (9%)
Query: 377 NLKVKAGKS-VALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGL 435
N+ + G+ L+G +G+GKS + L+ D G VR++G DI L + RR +G
Sbjct: 17 NVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGF 74
Query: 436 VSQEHALFG-TSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALL 494
V Q++ALF S+ NI +G + E + + + A L
Sbjct: 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAE---KLGI-AHLLDR---KPARL 127
Query: 495 SGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALD--QASLGRTTLVVAH-- 550
SGG++QR+A+ARA++ P +LLLDE SA+D +++ ++ L Q L V H
Sbjct: 128 SGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL 187
Query: 551 --KLSTVRNADLIAVVDNGCLVEIGTHNDL 578
AD +AV+ NG +VE G +L
Sbjct: 188 IEAAML---ADEVAVMLNGRIVEKGKLKEL 214
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 4e-28
Identities = 61/202 (30%), Positives = 99/202 (49%), Gaps = 31/202 (15%)
Query: 1023 VGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYA- 1081
L+G +G GKS + LI ++G VR++G D+ L R+ V Q+ YA
Sbjct: 27 CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQD---YAL 81
Query: 1082 ---GNIRDNIVFG--KLDASENEVVEAARAANAHEF--ISSLKDGYETECGERGVQLSGG 1134
++ NI +G ++ E R E I+ L D +LSGG
Sbjct: 82 FPHLSVYRNIAYGLRNVERVE----RDRRVREMAEKLGIAHLLDRKPA-------RLSGG 130
Query: 1135 QRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRI--MMGRTTIVVAHRLN-- 1190
+RQR+A+ARA++ P +LLLDE SA+D++++ V+ E L + + V H L
Sbjct: 131 ERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEA 190
Query: 1191 -TIKKLDSIALVADGRVVERGT 1211
+ D +A++ +GR+VE+G
Sbjct: 191 AMLA--DEVAVMLNGRIVEKGK 210
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 6e-29
Identities = 59/225 (26%), Positives = 104/225 (46%), Gaps = 18/225 (8%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+ E++K +LK +L VK G+ V+++GASGSGKST + ++ +G V
Sbjct: 5 LRAENIKKVIRGYE---ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV 61
Query: 415 RIDGVDIRRL---QLKWVR-REMGLVSQEHALFG-TSIKDNIMFGKLDATMDEVIAAATA 469
++G ++ +L +R R++G V Q H L + +N++ + +
Sbjct: 62 FLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVI-------VPMLKMGKPK 114
Query: 470 ANAHNFIRQLPE--GYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSE 527
A L G K+ + LSGG++QR+AIARA+ P++L DE T LDS
Sbjct: 115 KEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSA 174
Query: 528 SETLVQNALDQ-ASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVE 571
+ V + + G + ++V H+ + +G +V
Sbjct: 175 NTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 4e-24
Identities = 56/224 (25%), Positives = 92/224 (41%), Gaps = 47/224 (20%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKST---VIGLIQRFYDV-EQGSVRVDGMDVRELDVH 1064
+L+ S+ VK G V ++G SG GKST ++GL+ D +G V ++G +V +
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLL----DAPTEGKVFLEGKEVDYTNEK 74
Query: 1065 ---WYRKH---------------TALVSQE-PVIYAGNIRDNIVFGKLDASENEVVEAAR 1105
R TAL + P++ G E + R
Sbjct: 75 ELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMG----------KPKKEAK----ER 120
Query: 1106 AANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQS 1165
+ G + + +LSGG++QR+AIARA+ P +L DE T LD +
Sbjct: 121 GEYLLSEL-----GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSAN 175
Query: 1166 EQVVQEALDRI-MMGRTTIVVAHRLNTIKKLDSIALVADGRVVE 1208
+ V + +I G + ++V H + + DG+VV
Sbjct: 176 TKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 1e-28
Identities = 69/245 (28%), Positives = 115/245 (46%), Gaps = 29/245 (11%)
Query: 355 IEFEHVKFSYPSRPDSI-VLKDFNLKVKAGKSVALVGASGSGKSTA---IALVQRFYDAD 410
++ ++V +Y + I LK+ NL +K G+ V+++G SGSGKST I + +
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PT 58
Query: 411 DGIVRIDGVDIRRL---QLKWVRREM-GLVSQE-HALFGTSIKDNIMFGKLDATMDEVIA 465
+G V ID + L +L +RR+ G V Q+ + + + +N+ +I
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVEL--------PLIF 110
Query: 466 AATAANAHNFIRQLPEGYETKVG--ERGAL-----LSGGQKQRIAIARAIIKNPVILLLD 518
A + R+ ER A LSGGQ+QR+AIARA+ NP I+L D
Sbjct: 111 KYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILAD 170
Query: 519 EATSALDSESETLVQNALDQ--ASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHN 576
+ T ALDS++ + L + G+T +VV H ++ R + I + +G +
Sbjct: 171 QPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230
Query: 577 DLINR 581
+R
Sbjct: 231 GFDDR 235
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 8e-24
Identities = 70/249 (28%), Positives = 109/249 (43%), Gaps = 57/249 (22%)
Query: 992 IEMRRVDFAYPSRPDAL-VLRQFSMEVKPGTSVGLVGKSGCGKST---VIGLIQRFYDVE 1047
++++ V Y + + L+ ++ +K G V ++G SG GKST +IG + + +
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTE-- 59
Query: 1048 QGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNI--VF------GKLDASENE 1099
G V +D + +LD + RD I VF L A EN
Sbjct: 60 -GEVYIDNIKTNDLD----DDELTKIR----------RDKIGFVFQQFNLIPLLTALEN- 103
Query: 1100 VVE-------------AARAANAHEFISSLKDGYETECGERGV-----QLSGGQRQRIAI 1141
VE R A E + E ER QLSGGQ+QR+AI
Sbjct: 104 -VELPLIFKYRGAMSGEERRKRALECLKMA------ELEERFANHKPNQLSGGQQQRVAI 156
Query: 1142 ARAIIRNPTILLLDEATSALDVQSEQVVQEALDRI--MMGRTTIVVAHRLNTIKKLDSIA 1199
ARA+ NP I+L D+ T ALD ++ + + + L ++ G+T +VV H +N + + I
Sbjct: 157 ARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERII 216
Query: 1200 LVADGRVVE 1208
+ DG V
Sbjct: 217 YLKDGEVER 225
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 114 bits (289), Expect = 1e-28
Identities = 56/243 (23%), Positives = 108/243 (44%), Gaps = 30/243 (12%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+ + ++ + +LK + +++ G+ L+G +G+GK+T + ++ GIV
Sbjct: 16 VVVKDLRKRIGKK---EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALFGT-SIKDNIMF---------GKLDATMDEVI 464
+ G ++ + VR+ + + +E + + + F +++ ++
Sbjct: 73 TVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERAT 131
Query: 465 AAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSAL 524
A L E + +V S G +++ IARA++ NP + +LDE TS L
Sbjct: 132 EIA----------GLGEKIKDRVST----YSKGMVRKLLIARALMVNPRLAILDEPTSGL 177
Query: 525 DSESETLVQNALDQ-ASLGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIGTHNDLINRI 582
D + V+ L Q + G T LV +H + V D IA++ NG +VE GT +L R
Sbjct: 178 DVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY 237
Query: 583 DGH 585
Sbjct: 238 KAQ 240
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 5e-26
Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 11/220 (5%)
Query: 1006 DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW 1065
+L+ S E++ G GL+G +G GK+T + +I G V V G +V E + H
Sbjct: 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHE 85
Query: 1066 YRKHTALVSQEPVIYAG-NIRDNIVF-GKLDASENEVVEAARAANAHEFISSLKDGYETE 1123
RK + + +E Y + + F + G +
Sbjct: 86 VRKLISYLPEEAGAYRNMQGIEYLRFVAGF----YASSSSEIEEMVERATEIA--GLGEK 139
Query: 1124 CGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRI-MMGRTT 1182
+R S G +++ IARA++ NP + +LDE TS LDV + + V++ L + G T
Sbjct: 140 IKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTI 199
Query: 1183 IVVAHRLNTIKKL-DSIALVADGRVVERGTYAQLTHMRGA 1221
+V +H + ++ L D IAL+ +G +VE GT +L A
Sbjct: 200 LVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKA 239
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 2e-28
Identities = 49/263 (18%), Positives = 95/263 (36%), Gaps = 32/263 (12%)
Query: 318 FTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFN 377
F + I A + R + + + T+ L D + +K + VL
Sbjct: 317 FLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDF----VLNVEE 372
Query: 378 LKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVS 437
+ + + ++G +G+GK+T I L+ D+G I +L + +++
Sbjct: 373 GEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IPKLNVSMKPQKIAPKF 426
Query: 438 QE--HALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLS 495
LF I+ + + +V+ ++ + + +V LS
Sbjct: 427 PGTVRQLFFKKIRGQFLNPQF---QTDVVKPL----------RIDDIIDQEVQH----LS 469
Query: 496 GGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALD--QASLGRTTLVVAHKLS 553
GG+ QR+AI A+ I L+DE ++ LDSE + + +T +V H
Sbjct: 470 GGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI 529
Query: 554 TVRN-ADLIAVVDNGCLVEIGTH 575
AD + V +
Sbjct: 530 MATYLADKVIVFEGIPSKNAHAR 552
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 2e-26
Identities = 49/227 (21%), Positives = 91/227 (40%), Gaps = 33/227 (14%)
Query: 991 KIEMRRVDFAYPS---RPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVE 1047
+ + F+YPS VL E + ++G++G GK+T+I L+ +
Sbjct: 346 QNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD 405
Query: 1048 QGSVRVDGMDVRELDVHWYRKHTALVSQEPV--IYAGNIRDNIVFGKLDASENEVVEAAR 1105
+G + +L+V + A V ++ IR + + + +VV+ R
Sbjct: 406 EGQD------IPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQF---QTDVVKPLR 456
Query: 1106 AANAHEFISSLKDGYETECGERGVQ-LSGGQRQRIAIARAIIRNPTILLLDEATSALDVQ 1164
I + D + VQ LSGG+ QR+AI A+ I L+DE ++ LD +
Sbjct: 457 -------IDDIID--------QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSE 501
Query: 1165 SEQVVQEALDRIMM--GRTTIVVAHRLNTIKKL-DSIALVADGRVVE 1208
+ + + R ++ +T +V H L D + +
Sbjct: 502 QRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKN 548
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 5e-25
Identities = 41/236 (17%), Positives = 82/236 (34%), Gaps = 29/236 (12%)
Query: 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVI----GLIQRFY-- 1044
V Y + +PG +GLVG +G GKST + G +
Sbjct: 77 TNLEAHVTHRYSANS---FKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 133
Query: 1045 -----DVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVI--YAGNIRDNIVF-GKLDAS 1096
+ ++ G +++ + + + I+ + G+L
Sbjct: 134 FDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL 193
Query: 1097 ENEVVEAARAANAHEF-ISSLKDGYETECGERGV-QLSGGQRQRIAIARAIIRNPTILLL 1154
E + ++ R + +LSGG+ QR AI + ++ + +
Sbjct: 194 RMEKSPEDVKRYIKILQLENVLK--------RDIEKLSGGELQRFAIGMSCVQEADVYMF 245
Query: 1155 DEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKKL-DSIALVADGRVVE 1208
DE +S LDV+ + + ++ + I V H L+ + L D + ++ V
Sbjct: 246 DEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 1e-24
Identities = 44/234 (18%), Positives = 84/234 (35%), Gaps = 25/234 (10%)
Query: 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIAL----------- 402
HV Y +S L + G+ + LVG +G GKSTA+ +
Sbjct: 77 TNLEAHVTHRYS--ANSFKL-HRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 133
Query: 403 VQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEH--ALFGTSIKDNIMF-GKLDAT 459
+ + I G +++ K + ++ + + +IK + G+L
Sbjct: 134 FDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL 193
Query: 460 MDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDE 519
E QL + + + LSGG+ QR AI + ++ + + DE
Sbjct: 194 RMEKSPEDVKRYIKIL--QLENVLKRDIEK----LSGGELQRFAIGMSCVQEADVYMFDE 247
Query: 520 ATSALDSESETLVQNALDQ-ASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVE 571
+S LD + + + + + V H LS + +D + ++ V
Sbjct: 248 PSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 7e-28
Identities = 49/215 (22%), Positives = 88/215 (40%), Gaps = 25/215 (11%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK 1068
L S EV+ G + LVG +G GKST++ + +GS++ G +
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLAL 73
Query: 1069 HTALVSQEPVIYAG-NIRDNIVFGKLDASENEVVEAA-RAANAHEFISSLKDGYETECGE 1126
H A +SQ+ + + + D + E++ A +
Sbjct: 74 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK------------LG 121
Query: 1127 RGV-QLSGGQRQRIAIARAI-------IRNPTILLLDEATSALDVQSEQVVQEALDRI-M 1177
R QLSGG+ QR+ +A + +LLLDE ++LDV + + + L +
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ 181
Query: 1178 MGRTTIVVAHRLN-TIKKLDSIALVADGRVVERGT 1211
G ++ +H LN T++ L+ G+++ G
Sbjct: 182 QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGR 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 2e-27
Identities = 47/215 (21%), Positives = 90/215 (41%), Gaps = 25/215 (11%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRR 431
L + +V+AG+ + LVG +G+GKST +A + + G ++ G + +
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLAL 73
Query: 432 EMGLVSQEHAL-FGTSIKDNIMFGKLDATMDEVIAAATAAN--AHNFIRQLPEGYETKVG 488
+SQ+ F T + + + D T E++ A R +
Sbjct: 74 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQ------- 126
Query: 489 ERGALLSGGQKQRIAIARAI-------IKNPVILLLDEATSALDSESETLVQNALDQ-AS 540
LSGG+ QR+ +A + +LLLDE ++LD ++ + L +
Sbjct: 127 -----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ 181
Query: 541 LGRTTLVVAHKLS-TVRNADLIAVVDNGCLVEIGT 574
G ++ +H L+ T+R+A ++ G ++ G
Sbjct: 182 QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGR 216
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 9e-28
Identities = 56/231 (24%), Positives = 97/231 (41%), Gaps = 44/231 (19%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
+ + + F Y + + +Q + ++ G + ++G++GCGKST++ L+ + QG +
Sbjct: 5 LSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEPVI-YAGNIRDNIV----------FGKLDASENEV 1100
V + V Q +A ++ D IV F K + + +V
Sbjct: 63 EVY-------------QSIGFVPQFFSSPFAYSVLD-IVLMGRSTHINTFAKPKSHDYQV 108
Query: 1101 VEAA-RAANAHEFISSLKDGYETECGERGV-QLSGGQRQRIAIARAIIRNPTILLLDEAT 1158
A N ++ L R LSGGQRQ I IARAI ++LLDE T
Sbjct: 109 AMQALDYLN----LTHLAK--------REFTSLSGGQRQLILIARAIASECKLILLDEPT 156
Query: 1159 SALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKKL-DSIALVADGRV 1206
SALD+ ++ +V L + T + H+ N + + + L+
Sbjct: 157 SALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNF 207
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 55/245 (22%), Positives = 97/245 (39%), Gaps = 49/245 (20%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+ E++ F Y + + + N + G +A++G +G GKST + L+ + G +
Sbjct: 5 LSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEH-ALFGTSIKDNIMFG-----KLDATM---DEVIA 465
+ + +G V Q + F S+ D ++ G A D +A
Sbjct: 63 EVY-------------QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109
Query: 466 AA------TAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDE 519
A R+ LSGGQ+Q I IARAI ++LLDE
Sbjct: 110 MQALDYLNLTHLAK---REFTS------------LSGGQRQLILIARAIASECKLILLDE 154
Query: 520 ATSALDSESETLVQNALDQ--ASLGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIGTHN 576
TSALD ++ +V + L S T + H+ + V A+ +++ + G
Sbjct: 155 PTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQ-NFKFGETR 213
Query: 577 DLINR 581
+++
Sbjct: 214 NILTS 218
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 1e-27
Identities = 47/218 (21%), Positives = 89/218 (40%), Gaps = 31/218 (14%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK 1068
L + E K G +G++G +G GK+T ++ ++GSV + + Y+
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILS------YKP 336
Query: 1069 HTALVSQEPVIYAGNIR---DNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECG 1125
+ + G ++ +N L S E + N H +
Sbjct: 337 QRIFPNYD-----GTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLL------------ 379
Query: 1126 ERGVQ-LSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTT 1182
E V LSGG+ Q++ IA + + + +LD+ +S LDV+ +V +A+ R+ T
Sbjct: 380 ESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVT 439
Query: 1183 IVVAHRLNTIKKL-DSIALVADGRVVERGTYAQLTHMR 1219
++ H L+ + D I +V G + G ++
Sbjct: 440 FIIDHDLSIHDYIADRI-IVFKGEPEKAGLATSPVTLK 476
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 7e-26
Identities = 51/265 (19%), Positives = 97/265 (36%), Gaps = 31/265 (11%)
Query: 318 FTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFN 377
F + + A + R D + + E + + +++ ++++ + L N
Sbjct: 233 FLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDF----QLVVDN 288
Query: 378 LKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVS 437
+ K G+ + ++G +G GK+T ++ AD+G V + + + G V
Sbjct: 289 GEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQ 348
Query: 438 QEHALFGTSIKDNIMFGKLDAT--MDEVIAAATAANAHNFIRQLPEGYETKVGERGALLS 495
Q + KD + + L E+ V + LS
Sbjct: 349 Q---YLENASKDALSTSSWFFEEVTKRL--------------NLHRLLESNVND----LS 387
Query: 496 GGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALD--QASLGRTTLVVAHKLS 553
GG+ Q++ IA + K + +LD+ +S LD E +V A+ T ++ H LS
Sbjct: 388 GGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS 447
Query: 554 TVRN-ADLIAVVDNGCLVEIGTHND 577
AD I V + G
Sbjct: 448 IHDYIADRIIVFKGE-PEKAGLATS 471
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 1e-23
Identities = 43/215 (20%), Positives = 85/215 (39%), Gaps = 26/215 (12%)
Query: 1017 VKPGTSVGLVGKSGCGKSTVI-----GLIQRFYDVE-QGSVRVDGMDVRELDVHWYRKHT 1070
K T +G++GK+G GK+TV+ +I F D + R ++
Sbjct: 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEI------- 74
Query: 1071 ALVSQEPVIYAGNIRDNIVFGKLD-------ASENEVVEAARAANAHEFISSLKDGYETE 1123
+E Y+ ++ ++ + NE++ + + L + T
Sbjct: 75 YNYFKEL--YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLN--MTN 130
Query: 1124 CGERGV-QLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTT 1182
+ LSGG QR+ +A +++R + + D+ +S LDV+ + +A+ ++ +
Sbjct: 131 LWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYV 190
Query: 1183 IVVAHRLNTIKKL-DSIALVADGRVVERGTYAQLT 1216
IVV H L + L D I ++ V
Sbjct: 191 IVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYA 225
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-22
Identities = 41/233 (17%), Positives = 83/233 (35%), Gaps = 17/233 (7%)
Query: 358 EHVKFSYPSRPDSIVLKDFNLKV-KAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRI 416
V Y + + K F L K + ++G +G GK+T + ++ + G
Sbjct: 3 GEVIHRY--KVNG--FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFG--DP 56
Query: 417 DGVDIRRLQLKWVR-REMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNF 475
+ + LK R +E+ +E L+ +K ++ +
Sbjct: 57 NSKVGKDEVLKRFRGKEIYNYFKE--LYSNELKIVHKIQYVEYASKFLKGTVNEILTKID 114
Query: 476 IRQLPEGYETKVGERGAL------LSGGQKQRIAIARAIIKNPVILLLDEATSALDSESE 529
R + + + LSGG QR+ +A ++++ + + D+ +S LD
Sbjct: 115 ERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRER 174
Query: 530 TLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581
+ A+ + + +VV H L + DLI ++ V R
Sbjct: 175 MNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAAR 227
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 5e-27
Identities = 65/240 (27%), Positives = 107/240 (44%), Gaps = 23/240 (9%)
Query: 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI 413
I ++V + + L + N+ ++ G+ ++G SG+GK+T + ++ G
Sbjct: 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 414 VRIDGVDIRRLQLKWV---RREMGLVSQEHALFGT-SIKDNIMFG-KLDATMDEVIAA-- 466
+ D + V R++G+V Q AL+ + +NI F E I
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 467 ATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDS 526
A I + E LSG Q+QR+A+ARA++K+P +LLLDE S LD+
Sbjct: 122 EEVAK----ILDIHHVLNHFPRE----LSGAQQQRVALARALVKDPSLLLLDEPFSNLDA 173
Query: 527 E--SETLVQNALDQASLGRTTLVVAHKLS---TVRNADLIAVVDNGCLVEIGTHNDLINR 581
Q+ LG T LVV+H + + AD + V+ G LV++G DL +
Sbjct: 174 RMRDSARALVKEVQSRLGVTLLVVSHDPADIFAI--ADRVGVLVKGKLVQVGKPEDLYDN 231
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 1e-24
Identities = 55/221 (24%), Positives = 93/221 (42%), Gaps = 48/221 (21%)
Query: 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
+I ++ V + + L ++ ++ G G++G SG GK+T + +I G
Sbjct: 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 1051 VRVDGMDV---RELDVHWYRKHTALVSQEPVIYA----GNIRDNIVFG----KLDASENE 1099
+ D V +L V + +V Q +A +NI F K+ E
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQT---WALYPNLTAFENIAFPLTNMKMSKEEIR 118
Query: 1100 --VVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEA 1157
V E A+ + I + + + +LSG Q+QR+A+ARA++++P++LLLDE
Sbjct: 119 KRVEEVAKILD----IHHVLNHFPR-------ELSGAQQQRVALARALVKDPSLLLLDEP 167
Query: 1158 TSALDVQSEQVVQEALDRIMM-----------GRTTIVVAH 1187
S LD A R G T +VV+H
Sbjct: 168 FSNLD---------ARMRDSARALVKEVQSRLGVTLLVVSH 199
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 1e-26
Identities = 53/215 (24%), Positives = 93/215 (43%), Gaps = 27/215 (12%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK 1068
L E+K G +G+VG +G GK+T + ++ + +G + D V + +
Sbjct: 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDL------TVAYKPQ 354
Query: 1069 HTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERG 1128
+ + V + I KL+++ E + + +R
Sbjct: 355 YIKADYEGTV---YELLSKIDASKLNSNF-YKTELLKPLGIIDLY------------DRE 398
Query: 1129 VQ-LSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVV 1185
V LSGG+ QR+AIA ++R+ I LLDE ++ LDV+ V A+ +M +T +VV
Sbjct: 399 VNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 458
Query: 1186 AHRLNTIKKL-DSIALVADGRVVERGTYAQLTHMR 1219
H + I + D + +V +G + G MR
Sbjct: 459 EHDVLMIDYVSDRL-MVFEGEPGKYGRALPPMGMR 492
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 3e-26
Identities = 51/247 (20%), Positives = 97/247 (39%), Gaps = 35/247 (14%)
Query: 334 RVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASG 393
R EI T V E + + + Y S L+ ++K G+ + +VG +G
Sbjct: 267 RPYEIKFTKTGERVEIERETLVTYPRLVKDYGSF----RLEVEPGEIKKGEVIGIVGPNG 322
Query: 394 SGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQE--HALFGTSIKDNI 451
GK+T + ++ + +G + D + + + + + + L +
Sbjct: 323 IGKTTFVKMLAGVEEPTEGKIEWDL------TVAYKPQYIKADYEGTVYELLSKIDASKL 376
Query: 452 MFG-KLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIK 510
+ + + + Y+ +V E LSGG+ QR+AIA +++
Sbjct: 377 NSNFYKTELLKPL--------------GIIDLYDREVNE----LSGGELQRVAIAATLLR 418
Query: 511 NPVILLLDEATSALDSESETLVQNALD--QASLGRTTLVVAHKLSTVRN-ADLIAVVDNG 567
+ I LLDE ++ LD E V A+ +T LVV H + + +D + V + G
Sbjct: 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFE-G 477
Query: 568 CLVEIGT 574
+ G
Sbjct: 478 EPGKYGR 484
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 4e-24
Identities = 55/224 (24%), Positives = 89/224 (39%), Gaps = 34/224 (15%)
Query: 1014 SMEVKPGTSVGLVGKSGCGKSTVI-----GLIQRFYDVE-QGSVRVDGMDVRELDVHWYR 1067
VK G VG+VG +G GKST + LI + EL ++ +
Sbjct: 41 LPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEK 100
Query: 1068 KHTALVSQ---------EPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKD 1118
+ P G + + + K ++ E +A + ++ +
Sbjct: 101 LKNGEIRPVVKPQYVDLIPKAVKGKVIELL---KKADETGKLEEVVKALE----LENVLE 153
Query: 1119 GYETECGERGV-QLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM 1177
R + LSGG+ QR+AIA A++RN T DE +S LD++ A+ R+
Sbjct: 154 --------REIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLS 205
Query: 1178 -MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQLTHMR 1219
G++ +VV H L + L D I V G G ++Q R
Sbjct: 206 EEGKSVLVVEHDLAVLDYLSDII-HVVYGEPGVYGIFSQPKGTR 248
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 3e-21
Identities = 57/228 (25%), Positives = 93/228 (40%), Gaps = 42/228 (18%)
Query: 358 EHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAI-----ALVQRFYDAD-D 411
E Y ++ VL + VK G V +VG +G+GKSTA+ L+ +
Sbjct: 25 EDCVHRYG--VNAFVLYRLPV-VKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDS 81
Query: 412 GIVRIDGVDIRRLQLKWVR---REMGLVSQE-------HALFGT---SIKDNIMFGKLDA 458
I LQ + + E+ V + A+ G +K GKL+
Sbjct: 82 WDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEE 141
Query: 459 TMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLD 518
+ + +L E ++ LSGG+ QR+AIA A+++N D
Sbjct: 142 VVKAL--------------ELENVLEREIQH----LSGGELQRVAIAAALLRNATFYFFD 183
Query: 519 EATSALDSESETLVQNALDQ-ASLGRTTLVVAHKLSTVRN-ADLIAVV 564
E +S LD A+ + + G++ LVV H L+ + +D+I VV
Sbjct: 184 EPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVV 231
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 107 bits (271), Expect = 2e-26
Identities = 35/225 (15%), Positives = 85/225 (37%), Gaps = 35/225 (15%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+E + Y D VL+ + ++ G V G +G GK+T + + + G +
Sbjct: 11 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALFGT-SIKDNIMF-GKL------DATMDEVIAA 466
+GV I + V+ ++ + +E + S++D + L + + + +
Sbjct: 67 IYNGVPITK-----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 121
Query: 467 ATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDS 526
+ + +L S G +R+ +A ++ N I +LD+ A+D
Sbjct: 122 VEVLDLKKKLGEL---------------SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 166
Query: 527 ESETLVQNAL-DQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLV 570
+S+ V ++ + ++ + + + D+ +
Sbjct: 167 DSKHKVLKSILEILKEKGIVIISSREELSY--CDVNENLHKYSTK 209
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 1e-25
Identities = 39/212 (18%), Positives = 86/212 (40%), Gaps = 27/212 (12%)
Query: 1006 DALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW 1065
D VL + +M ++ G V G +G GK+T++ I + +G + +G+ + ++
Sbjct: 21 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKV---- 76
Query: 1066 YRKHTALVSQEPVIYAG-NIRDNIVF-GKL---DASENEVVEAARAANAHEFISSLKDGY 1120
+ + +E ++ ++ D + L ++NE+++A + + L
Sbjct: 77 -KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLG--- 132
Query: 1121 ETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--M 1178
+LS G +R+ +A ++ N I +LD+ A+D S+ V +++ I+
Sbjct: 133 ---------ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEK 183
Query: 1179 GRTTIVVAHRLNTIKKLDSIALVADGRVVERG 1210
G I L+ D +
Sbjct: 184 GIVIISSREELSYC---DVNENLHKYSTKIDK 212
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 2e-26
Identities = 50/247 (20%), Positives = 95/247 (38%), Gaps = 35/247 (14%)
Query: 334 RVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASG 393
R EI V E +E+ + Y S L+ +++ G+ + +VG +G
Sbjct: 337 RPYEIRFTKLSERVDVERETLVEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIVGPNG 392
Query: 394 SGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQE--HALFGTSIKDNI 451
GK+T + ++ + +G V D + + + + + + L +
Sbjct: 393 IGKTTFVKMLAGVEEPTEGKVEWDL------TVAYKPQYIKAEYEGTVYELLSKIDSSKL 446
Query: 452 MFG-KLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIK 510
+ + + + Y+ V + LSGG+ QR+AIA +++
Sbjct: 447 NSNFYKTELLKPL--------------GIIDLYDRNVED----LSGGELQRVAIAATLLR 488
Query: 511 NPVILLLDEATSALDSESETLVQNALD--QASLGRTTLVVAHKLSTVRN-ADLIAVVDNG 567
+ I LLDE ++ LD E V A+ +T LVV H + + +D + V + G
Sbjct: 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE-G 547
Query: 568 CLVEIGT 574
G
Sbjct: 548 EPGRHGR 554
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 7e-26
Identities = 53/214 (24%), Positives = 90/214 (42%), Gaps = 25/214 (11%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK 1068
L E++ G +G+VG +G GK+T + ++ + +G V D V + +
Sbjct: 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL------TVAYKPQ 424
Query: 1069 HTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERG 1128
+ + V + K+D+S+ I L D +
Sbjct: 425 YIKAEYEGTVYE--------LLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVED----- 471
Query: 1129 VQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVA 1186
LSGG+ QR+AIA ++R+ I LLDE ++ LDV+ V A+ +M +T +VV
Sbjct: 472 --LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 529
Query: 1187 HRLNTIKKL-DSIALVADGRVVERGTYAQLTHMR 1219
H + I + D + +V +G G MR
Sbjct: 530 HDVLMIDYVSDRL-IVFEGEPGRHGRALPPMGMR 562
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 6e-24
Identities = 52/215 (24%), Positives = 86/215 (40%), Gaps = 16/215 (7%)
Query: 1014 SMEVKPGTSVGLVGKSGCGKSTVI----GLIQ-RFYDVE-QGSVRVDGMDVRELDVHWYR 1067
VK G VG+VG +G GK+T + G + + + EL ++ R
Sbjct: 111 LPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFER 170
Query: 1068 KHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGER 1127
+ ++ V GK E+++ E + + +R
Sbjct: 171 LKNGEIRPVVKPQYVDLLPKAVKGK----VRELLKKVDEVGKFEEVVKELEL--ENVLDR 224
Query: 1128 GV-QLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVV 1185
+ QLSGG+ QR+AIA A++R DE +S LD++ V + R+ G+ +VV
Sbjct: 225 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVV 284
Query: 1186 AHRLNTIKKL-DSIALVADGRVVERGTYAQLTHMR 1219
H L + L D I V G G +++ R
Sbjct: 285 EHDLAVLDYLSDVI-HVVYGEPGVYGIFSKPKGTR 318
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 7e-24
Identities = 52/215 (24%), Positives = 90/215 (41%), Gaps = 16/215 (7%)
Query: 358 EHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAI-----ALVQRFYDAD-D 411
E Y ++ VL + VK G V +VG +G+GK+TA+ L+ + +
Sbjct: 95 EDCVHRY--GVNAFVLYRLPI-VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDS 151
Query: 412 GIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAAN 471
I LQ + R + G + + + GK+ + +V
Sbjct: 152 WDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV-DEVGKFE 210
Query: 472 AHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETL 531
+L + ++ + LSGG+ QR+AIA A+++ DE +S LD
Sbjct: 211 EVVKELELENVLDRELHQ----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLK 266
Query: 532 VQNALDQ-ASLGRTTLVVAHKLSTVRN-ADLIAVV 564
V + + A+ G+ LVV H L+ + +D+I VV
Sbjct: 267 VARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVV 301
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 4e-23
Identities = 77/238 (32%), Positives = 118/238 (49%), Gaps = 26/238 (10%)
Query: 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI 413
EI+ E++ + + L + NLK+K G+ +AL+G SGSGKST + + Y G
Sbjct: 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59
Query: 414 VRIDGVDIRRLQLKWVRREMGLVSQEHALFGT-SIKDNIMFG-KLDATMDEVIAAATAAN 471
+ D D+ L K R +GLV Q AL+ ++ NI F +L E I
Sbjct: 60 IYFDEKDVTELPPK--DRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREV 117
Query: 472 AHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSE--SE 529
A + + + + LSGGQ+QR+AIARA++K P +LLLDE S LD+ E
Sbjct: 118 AK--MLHIDKLLNRYPWQ----LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE 171
Query: 530 TLVQNALDQASLGRTTLVVAH------KLSTVRNADLIAVVDNGCLVEIGTHNDLINR 581
+ Q LG TT+ V H + AD IAV+ G ++++GT +++ +
Sbjct: 172 VRAELKRLQKELGITTVYVTHDQAEALAM-----ADRIAVIREGEILQVGTPDEVYYK 224
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 97.7 bits (244), Expect = 9e-22
Identities = 65/209 (31%), Positives = 91/209 (43%), Gaps = 56/209 (26%)
Query: 1005 PDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVREL--- 1061
+ L ++++K G + L+G SG GKST++ I Y G + D DV EL
Sbjct: 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK 73
Query: 1062 --DVHWYRKHTALVSQEPVIYA----GNIRDNIVFG----KLDASENE--VVEAARAANA 1109
+V LV Q +A + NI F K E + V E A+ +
Sbjct: 74 DRNV-------GLVFQN---WALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLH- 122
Query: 1110 HEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVV 1169
I L + Y QLSGGQ+QR+AIARA+++ P +LLLDE S LD
Sbjct: 123 ---IDKLLNRYPW-------QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD------- 165
Query: 1170 QEALDRIMM-----------GRTTIVVAH 1187
AL R+ + G TT+ V H
Sbjct: 166 --ALLRLEVRAELKRLQKELGITTVYVTH 192
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 6e-21
Identities = 64/238 (26%), Positives = 114/238 (47%), Gaps = 26/238 (10%)
Query: 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI 413
E++ E++ + + + NL +K G+ + L+G SG GK+T + ++ + +G
Sbjct: 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 67
Query: 414 VRIDGVDIRRLQLKWVRREMGLVSQEHALFGT-SIKDNIMFG-KLDATMDEVIAAATAAN 471
+ D+ L K R + +V Q +A++ ++ +NI F K+ + I
Sbjct: 68 IYFGDRDVTYLPPK--DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWA 125
Query: 472 AHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSE--SE 529
A + Q+ E + LSGGQ+QR+A+ARAI+ P +LL+DE S LD++
Sbjct: 126 AE--LLQIEELLNRYPAQ----LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA 179
Query: 530 TLVQNALDQASLGRTTLVVAH------KLSTVRNADLIAVVDNGCLVEIGTHNDLINR 581
+ Q L TT+ V H + D IAV++ G L++IG+ ++ R
Sbjct: 180 MRAEIKKLQQKLKVTTIYVTHDQVEAMTM-----GDRIAVMNRGQLLQIGSPTEVYLR 232
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 4e-20
Identities = 60/218 (27%), Positives = 90/218 (41%), Gaps = 49/218 (22%)
Query: 992 IEMRRVDF--AYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQG 1049
I+M V + + + ++ +K G + L+G SGCGK+T + +I + +G
Sbjct: 7 IKMVEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG 66
Query: 1050 SVRVDGMDVREL-----DVHWYRKHTALVSQEPVIYA----GNIRDNIVFG----KLDAS 1096
+ DV L ++ ++V Q YA + +NI F K
Sbjct: 67 RIYFGDRDVTYLPPKDRNI-------SMVFQS---YAVWPHMTVYENIAFPLKIKKFPKD 116
Query: 1097 ENE--VVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLL 1154
E + V AA I L + QLSGGQRQR+A+ARAI+ P +LL+
Sbjct: 117 EIDKRVRWAAELLQ----IEELLN-------RYPAQLSGGQRQRVAVARAIVVEPDVLLM 165
Query: 1155 DEATSALDVQSEQVVQEALDRIMMGRTTIVVAH-RLNT 1191
DE S LD A R+ M R I +L
Sbjct: 166 DEPLSNLD---------AKLRVAM-RAEIKKLQQKLKV 193
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 94.6 bits (236), Expect = 8e-21
Identities = 68/244 (27%), Positives = 113/244 (46%), Gaps = 38/244 (15%)
Query: 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI 413
I ++K + + + +VK G+ VAL+G SG GK+T + ++ Y G
Sbjct: 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59
Query: 414 VRIDGVDIRRLQLKWVRREMGLVSQEHALFGT-SIKDNIMFG-KLDATMDEVIAAATAAN 471
+ D V + + K RE+G+V Q +AL+ ++ +NI F + + +
Sbjct: 60 IYFDDVLVNDIPPK--YREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEI 117
Query: 472 AHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALD------ 525
A + + K + LSGGQ+QR+A+ARA++K P +LL DE S LD
Sbjct: 118 AR--KLLIDNLLDRKPTQ----LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMI 171
Query: 526 --SESETLVQNALDQASLGRTTLVVAH------KLSTVRNADLIAVVDNGCLVEIGTHND 577
+E + L Q LG T++ V H + A IAV + G LV+ GT ++
Sbjct: 172 MRAEIKHL------QQELGITSVYVTHDQAEAMTM-----ASRIAVFNQGKLVQYGTPDE 220
Query: 578 LINR 581
+ +
Sbjct: 221 VYDS 224
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 91.5 bits (228), Expect = 9e-20
Identities = 63/209 (30%), Positives = 92/209 (44%), Gaps = 56/209 (26%)
Query: 1005 PDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVREL--- 1061
+ S EVK G V L+G SGCGK+T + ++ Y G + D + V ++
Sbjct: 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK 73
Query: 1062 --DVHWYRKHTALVSQEPVIYA----GNIRDNIVFG----KLDASENE--VVEAARAANA 1109
+V +V Q YA + +NI F ++ E E VVE AR
Sbjct: 74 YREV-------GMVFQN---YALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLL- 122
Query: 1110 HEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVV 1169
I +L D + QLSGGQ+QR+A+ARA+++ P +LL DE S LD
Sbjct: 123 ---IDNLLD-------RKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD------- 165
Query: 1170 QEALDRIMM-----------GRTTIVVAH 1187
A R++M G T++ V H
Sbjct: 166 --ANLRMIMRAEIKHLQQELGITSVYVTH 192
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 3e-19
Identities = 65/248 (26%), Positives = 114/248 (45%), Gaps = 40/248 (16%)
Query: 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI 413
+ V + + +++ +L+VK G+ + L+G SG GK+T + ++ + G
Sbjct: 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
Query: 414 VRIDGVDIRRLQLKWVR----REMGLVSQEHALFGT-SIKDNIMFG-KLDATMDEVIAAA 467
+ I + + R++ +V Q +AL+ ++ DNI F KL + I
Sbjct: 60 IYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR 119
Query: 468 TAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALD-- 525
A + L E K E LSGGQ+QR+A+ RAI++ P + L+DE S LD
Sbjct: 120 VREVAE--LLGLTELLNRKPRE----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK 173
Query: 526 ------SESETLVQNALDQASLGRTTLVVAH------KLSTVRNADLIAVVDNGCLVEIG 573
+E + L Q LG TT+ V H + D IAV++ G L ++G
Sbjct: 174 LRVRMRAELKKL------QRQLGVTTIYVTHDQVEAMTM-----GDRIAVMNRGVLQQVG 222
Query: 574 THNDLINR 581
+ +++ ++
Sbjct: 223 SPDEVYDK 230
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 89.2 bits (222), Expect = 7e-19
Identities = 58/203 (28%), Positives = 91/203 (44%), Gaps = 41/203 (20%)
Query: 1005 PDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVH 1064
+ +R+ S+EVK G + L+G SGCGK+T + +I + +G + + V + +
Sbjct: 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKG 73
Query: 1065 WY-----RKHTALVSQEPVIYA----GNIRDNIVFG----KLDASENE--VVEAARAANA 1109
+ R A+V Q YA + DNI F K+ E + V E A
Sbjct: 74 IFVPPKDR-DIAMVFQS---YALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLG- 128
Query: 1110 HEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVV 1169
++ L + + +LSGGQRQR+A+ RAI+R P + L+DE S LD
Sbjct: 129 ---LTELLN-------RKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD------- 171
Query: 1170 QEALDRIMMGRTTIVVAH-RLNT 1191
A R+ M R + +L
Sbjct: 172 --AKLRVRM-RAELKKLQRQLGV 191
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 83.3 bits (207), Expect = 8e-18
Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 19/156 (12%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQL-KWVR 430
+K +LKV G+ V L+GA+G+GK+T ++ + A G + +G DI R
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80
Query: 431 REMGLVSQEHALFGT-SIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYET--KV 487
+ LV + +F ++ +N+M G A + R L + ++
Sbjct: 81 MGIALVPEGRRIFPELTVYENLMMG-----------AYNRKDKEGIKRDLEWIFSLFPRL 129
Query: 488 GER----GALLSGGQKQRIAIARAIIKNPVILLLDE 519
ER G LSGG++Q +AI RA++ P +L++DE
Sbjct: 130 KERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDE 165
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 72.5 bits (179), Expect = 4e-14
Identities = 57/226 (25%), Positives = 98/226 (43%), Gaps = 37/226 (16%)
Query: 1008 LVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW-Y 1066
++ ++V G V L+G +G GK+T + I ++G + +G D+ H
Sbjct: 20 HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVIN 79
Query: 1067 RKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYET--EC 1124
R ALV + R +F +L EN ++ A + L+ +
Sbjct: 80 RMGIALVPEG--------RR--IFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRL 129
Query: 1125 GERGVQ----LSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQE---ALDRIM 1177
ER Q LSGG++Q +AI RA++ P +L++DE + L + +V E + +I
Sbjct: 130 KERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL---APILVSEVFEVIQKIN 186
Query: 1178 MGRTTIVVAHRLNTIKKLDSIAL-VAD-------GRVVERGTYAQL 1215
TTI++ + N AL VA G++V G ++L
Sbjct: 187 QEGTTILLVEQ-NA-----LGALKVAHYGYVLETGQIVLEGKASEL 226
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 1e-16
Identities = 54/212 (25%), Positives = 84/212 (39%), Gaps = 62/212 (29%)
Query: 1005 PDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVREL--- 1061
+ +V + ++++ G V VG SGCGKST++ +I + G + + + +
Sbjct: 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA 73
Query: 1062 --DVHWYRKHTALVSQEPVIYA----GNIRDNIVFG----KLDASENE--VVEAARAANA 1109
V +V Q YA ++ +N+ FG V + A
Sbjct: 74 ERGV-------GMVFQS---YALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ- 122
Query: 1110 HEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALD----VQS 1165
++ L D + LSGGQRQR+AI R ++ P++ LLDE S LD VQ
Sbjct: 123 ---LAHLLD-------RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ- 171
Query: 1166 EQVVQEALDRIM----------MGRTTIVVAH 1187
M +GRT I V H
Sbjct: 172 -----------MRIEISRLHKRLGRTMIYVTH 192
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 1e-15
Identities = 77/246 (31%), Positives = 112/246 (45%), Gaps = 42/246 (17%)
Query: 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTA---IA-LVQRFYDA 409
++ ++V ++ + +V KD NL + G+ V VG SG GKST IA L
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL----ETI 55
Query: 410 DDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFG-TSIKDNIMFG-KLDATMDEVIAAA 467
G + I + R +G+V Q +AL+ S+ +N+ FG KL EVI
Sbjct: 56 TSGDLFIGEKRMNDTPPA--ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR 113
Query: 468 TAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSE 527
A + QL + K LSGGQ+QR+AI R ++ P + LLDE S LD+
Sbjct: 114 VNQVAE--VLQLAHLLDRKPKA----LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 167
Query: 528 SETL-VQ-----NALDQASLGRTTLVVAH------KLSTVRNADLIAVVDNGCLVEIGTH 575
L VQ + L LGRT + V H L AD I V+D G + ++G
Sbjct: 168 ---LRVQMRIEISRL-HKRLGRTMIYVTHDQVEAMTL-----ADKIVVLDAGRVAQVGKP 218
Query: 576 NDLINR 581
+L +
Sbjct: 219 LELYHY 224
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 4e-16
Identities = 51/225 (22%), Positives = 98/225 (43%), Gaps = 18/225 (8%)
Query: 373 LKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRRE 432
L ++ V G ++G +GSGKST I ++ F AD+G V + DI + +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH- 81
Query: 433 MGLVS--QEHALFGT-SIKDNIMFGKLDATMDEVIAA----------ATAANAHNFIRQL 479
G+V Q ++ +N++ G++ + + A + L
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 480 PEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSAL-DSESETLVQNALDQ 538
+ LSGGQ + + I RA++ NP ++++DE + + + + + L+
Sbjct: 142 --KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 199
Query: 539 ASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRI 582
+ G T L++ H+L V N D + V+ NG ++ G + I +
Sbjct: 200 KAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNV 244
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 2e-13
Identities = 42/231 (18%), Positives = 89/231 (38%), Gaps = 46/231 (19%)
Query: 1010 LRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKH 1069
L S+ V G ++G +G GKST+I +I F ++G V + D+ +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPA----- 77
Query: 1070 TALVSQEPVIYAG------NIRDNIVFGKLDASENEVV---------------------E 1102
+ + G + ++ EN ++ E
Sbjct: 78 -------ELYHYGIVRTFQTPQ---PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKE 127
Query: 1103 AARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALD 1162
A + + L + +LSGGQ + + I RA++ NP ++++DE + +
Sbjct: 128 EEMVEKAFKILEFL--KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVA 185
Query: 1163 VQSEQVVQEALDRI-MMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGT 1211
+ + + G T +++ HRL+ + D + ++ +G+++ G
Sbjct: 186 PGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 79.7 bits (196), Expect = 4e-15
Identities = 47/279 (16%), Positives = 93/279 (33%), Gaps = 35/279 (12%)
Query: 915 LVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGSS 974
L + + + + + + + + + ++
Sbjct: 354 LKDETVAPRFKIVVEYIAAIGADLIDERIIDQQAWFTHITPYMTIFLHEKKAKDILDEFR 413
Query: 975 QAGDGTRGSKLQKISGKIEMRRVDFAYPSRP--DALVLRQFSMEVKPGTSVGLVGKSGCG 1032
+ + E + S ++L + + +K G+ G +GCG
Sbjct: 414 KRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCG 473
Query: 1033 KSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKH--TALVSQEPVIYAGNIRDNIVF 1090
KST++ I ++D ++ T V +
Sbjct: 474 KSTLMRAIAN----------------GQVDGFPTQEECRTVYVEHDIDGTHS-------- 509
Query: 1091 GKLDASENEVVEAARAANAHEFISSLKD-GYETECGERGV-QLSGGQRQRIAIARAIIRN 1148
D S + V + L + G+ E + LSGG + ++A+ARA++RN
Sbjct: 510 ---DTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRN 566
Query: 1149 PTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAH 1187
ILLLDE T+ LD + + L+ G T+I ++H
Sbjct: 567 ADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 79.3 bits (195), Expect = 6e-15
Identities = 47/238 (19%), Positives = 81/238 (34%), Gaps = 31/238 (13%)
Query: 316 KYFTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKD 375
Y T + G D+ E E + I+L
Sbjct: 394 PYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNK 453
Query: 376 FNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGL 435
L++K + + G +G GKST + + DG +
Sbjct: 454 TQLRLKRARRYGICGPNGCGKSTLMRAIAN--GQVDGFPTQEECRT------------VY 499
Query: 436 VSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQL---PEGYETKVGERGA 492
V + + LD + T + + + E +
Sbjct: 500 VEHDIDGTHSDTS------VLDFVFES--GVGTKEAIKDKLIEFGFTDEMIAMPISA--- 548
Query: 493 LLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAH 550
LSGG K ++A+ARA+++N ILLLDE T+ LD+ + + N L + G T++ ++H
Sbjct: 549 -LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL--NTCGITSITISH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 2e-10
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 1130 QLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRL 1189
LSGGQ+ ++ +A + P +++LDE T+ LD S + +AL I++ H
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE--FEGGVIIITHSA 958
Query: 1190 NTIKKL-DSIALVADGRVVE-RGTYAQ 1214
K L + + V DGR+ +
Sbjct: 959 EFTKNLTEEVWAVKDGRMTPSGHNWVS 985
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 2e-08
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 494 LSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLS 553
LSGGQK ++ +A + P +++LDE T+ LD +S + AL +++ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKAL--KEFEGGVIIITHSAE 959
Query: 554 TVRN-ADLIAVVDNGCLV 570
+N + + V +G +
Sbjct: 960 FTKNLTEEVWAVKDGRMT 977
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 7e-05
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 983 SKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQR 1042
+K + I +++ ++F YP + + + + + ++G +G GKST+I ++
Sbjct: 666 TKQKAI---VKVTNMEFQYPG-TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTG 721
Query: 1043 FYDVEQGSVRV 1053
G V
Sbjct: 722 ELLPTSGEVYT 732
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 8e-05
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
++ +++F YP + D N + +A++G +G+GKST I ++ G V
Sbjct: 672 VKVTNMEFQYPG-TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Query: 415 RI 416
Sbjct: 731 YT 732
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.9 bits (183), Expect = 1e-13
Identities = 93/621 (14%), Positives = 180/621 (28%), Gaps = 198/621 (31%)
Query: 203 LSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLG--IKQGTAKG 260
+ Y+ Y I+ + + + + D ++IL S ++ I A
Sbjct: 11 TGEHQYQ-YKD---ILSVFEDAFVDNFDC---KDVQDMPKSIL-SKEEIDHIIMSKDAV- 61
Query: 261 LAVGSTGLSFAIWAFLAWYGSHLV-MFKGETGGKIYAAGISFILSGLSLGSALPELKY-- 317
+G W L+ +V F E Y F++S + P +
Sbjct: 62 -----SGTLRLFWTLLS-KQEEMVQKFVEEVLRINY----KFLMSPIKTEQRQPSMMTRM 111
Query: 318 FTEASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSI-VLKDF 376
+ E DR+ ++ K +V SR L+
Sbjct: 112 YIEQR-------DRLYNDNQVF---AKY-------------NV-----SRLQPYLKLRQA 143
Query: 377 NLKVKAGKSVALVGASGSGKSTAIALVQRFYD----ADDGIVRIDGVDIRRLQLKWVRRE 432
L+++ K+V + G GSGK+ V Y D I W+
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-------------WLN-- 188
Query: 433 MGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGA 492
+ + + M KL +D N+ +
Sbjct: 189 LKNCNSPETVL-------EMLQKLLYQID-----------PNWT-SRSDHSSN------- 222
Query: 493 LLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKL 552
K RI +A ++ LL + +N L LV L
Sbjct: 223 -----IKLRIHSIQAELRR---LLKSK-----------PYENCL---------LV----L 250
Query: 553 STVRNADLIAVVDNGCLVEIGTHN-DLINRIDGHYAK---MAKLQRQFSCDDQETIPETH 608
V+NA + C + + T + + + + + D+ +++
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL---- 306
Query: 609 VSSVTRSSGGRL--SAARSSP---AIFASPLPVIDSPQPVT---YLPPSFFRL-----LS 655
+ L ++P +I A + T + + +L S
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESI----RDGLATWDNWKHVNCDKLTTIIESS 362
Query: 656 LNA--PEWKQGLIGSLSAIAVGSVQ-PTYALTI----------GGMISAFFAKSHSEMQS 702
LN P + + L ++ S PT L++ +++ S E Q
Sbjct: 363 LNVLEPAEYRKMFDRL-SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 703 RIRTYSL--IFCSLS-----LISLAFNLLQHYN-------------------FAYMGGRL 736
+ T S+ I+ L +L +++ HYN ++++G L
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 737 TKRIRLRMLEKILTFEAAWFD 757
+ E++ F + D
Sbjct: 482 KN---IEHPERMTLFRMVFLD 499
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.5 bits (182), Expect = 2e-13
Identities = 53/309 (17%), Positives = 93/309 (30%), Gaps = 86/309 (27%)
Query: 926 VFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQSLIPGSSQAGDGTRGSKL 985
+ F+ L+S + + + + L + S K RQ P + +L
Sbjct: 64 TLRLFWTLLSKQEEMVQK-FVEEVLRINYKFLMSPIKTEQRQ---PSMMTRMYIEQRDRL 119
Query: 986 QKISGKIEMRRVDFAYPSRPDA-LVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFY 1044
+ V SR L LRQ +E++P +V + G G GK+ V + Y
Sbjct: 120 YNDNQVFAKYNV-----SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 1045 DVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAA 1104
V+ MD + + W + + S V+E
Sbjct: 175 KVQC------KMDFK---IFW----------------------LNLKNCN-SPETVLE-- 200
Query: 1105 RAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRN-------PTILL-LDE 1156
+ + + + + S + RI +A +R LL L
Sbjct: 201 ---MLQKLLYQIDPNWTSRS-----DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL- 251
Query: 1157 ATSALDVQSEQVVQEALD---RIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYA 1213
+VQ+ + A + +I++ TT R V D T+
Sbjct: 252 -----NVQNAKAW-NAFNLSCKILL--TT-----R-------F--KQVTDFLSAATTTHI 289
Query: 1214 QLTHMRGAF 1222
L H
Sbjct: 290 SLDHHSMTL 298
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 3e-10
Identities = 103/691 (14%), Positives = 194/691 (28%), Gaps = 241/691 (34%)
Query: 97 WS-KTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVP 155
W+ + + ++V+ K++E VLR F S I + + S++ + E+
Sbjct: 69 WTLLSKQEEMVQ---KFVEEVLRINYKFLMSP--------IKTEQRQPSMMTRMYIEQR- 116
Query: 156 IFVMNASVFISGLAFSTYFSWRLSLV-AFPTLLL-------LIIPGMIYGKYLIYLSKKA 207
++ F+ Y RL LL ++I G++ G
Sbjct: 117 -----DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL-G---------- 160
Query: 208 YKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLGIKQGTAKGLAVGSTG 267
GK + S K
Sbjct: 161 ---SGKT-WVALDVCLSYKVQCKM------------------------------------ 180
Query: 268 LSFAI-WAFLAWYGSH---LVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTEASI 323
F I W L S L M + K+ + S +K +
Sbjct: 181 -DFKIFWLNLKNCNSPETVLEMLQ-----KLLY---QIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 324 AASRIFDRIDRVPEIDGEDTKGL-VLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVK- 381
A R + L VL V+ ++ FNL K
Sbjct: 232 AELRRLLKSKPYE-------NCLLVLLNVQ----------------NAKAWNAFNLSCKI 268
Query: 382 ----AGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWV-------R 430
K V + +T I+L + + L LK++
Sbjct: 269 LLTTRFKQVTDFL--SAATTTHISLD----HHSMTLTPDEVKS---LLLKYLDCRPQDLP 319
Query: 431 REMGLVS-QEHALFGTSIKD---------NIMFGKLDATMDEVIAAATAANAHNFIRQLP 480
RE+ + + ++ SI+D ++ KL ++ + A R++
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE----YRKM- 374
Query: 481 EGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSAL--DSESETLVQNALDQ 538
++ R+++ P ILL S + D V +++
Sbjct: 375 --FD----------------RLSVFPPSAHIPTILL-----SLIWFDVIKSD-VMVVVNK 410
Query: 539 ASLGRTTLVVAH-KLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQFS 597
L + +LV K ST+ + + E H +++ HY + + F
Sbjct: 411 --LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD----HY----NIPKTFD 460
Query: 598 CDDQETIPE-----THVSSVTRSSGGRLSAARSSPAIFASPLPVIDSPQPVTYLPPSFFR 652
DD +H+ G L + + FR
Sbjct: 461 SDDLIPPYLDQYFYSHI-------GHHLKNIEHPERM-------------------TLFR 494
Query: 653 LLSLNAPEW-KQGLIGSLSAI-AVGSVQPT------YALTIGGMISAFFAKSHSEMQSRI 704
++ L+ + +Q + +A A GS+ T Y + + + + +
Sbjct: 495 MVFLDF-RFLEQKIRHDSTAWNASGSILNTLQQLKFY--------KPYICDNDPKYERLV 545
Query: 705 RTYS--LIFCSLSLISLAF-NLLQHYNFAYM 732
L +LI + +LL+ A M
Sbjct: 546 NAILDFLPKIEENLICSKYTDLLR---IALM 573
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 3e-06
Identities = 58/387 (14%), Positives = 114/387 (29%), Gaps = 118/387 (30%)
Query: 1 MRREKNKNNIGIIFRFADRTDILLMVLGTV--GAIGDGMSTNCLLVFASR---IMNSLGF 55
+R + + + + + LL VL V + + +C ++ +R + + L
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLL-VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 56 GQT-QSQQNHHENFLDEVEKCSLYFVYLGLAVMVVAFLEGYCWSKTSE--RQVVKI---R 109
T +HH L E SL YL + + R+V+ R
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDC--------------RPQDLPREVLTTNPRR 329
Query: 110 YKYLEAVLRQEVG---FFDSQDATTTSEVI-NSISK-DTSLIQELLSEKVPIFVMNASVF 164
+ +R + + + + +I +S++ + + +++ +++ +F S
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF-DRLSVF--PPSAH 386
Query: 165 ISGLAFSTYFSW--------RLSLVAFPTLLLLII--PGMIYGKYLIYLSKKAYKEYGKA 214
I + S W + + L+ IYL K E
Sbjct: 387 IPTILLSLI--WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN--- 441
Query: 215 NAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLGIKQGTAKGLAVGSTGLSFAIWA 274
E AL R I+D Y +F
Sbjct: 442 ----EYAL-----------HRSIVDHYNIP-----------------------KTFDSDD 463
Query: 275 FLA------WYGSHLV--MFKGETGG-----------------KIYAAGISFILSGLSLG 309
+ +Y SH+ + E KI ++ SG S+
Sbjct: 464 LIPPYLDQYFY-SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG-SIL 521
Query: 310 SALPELK----YFTEASIAASRIFDRI 332
+ L +LK Y + R+ + I
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAI 548
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 3e-08
Identities = 59/217 (27%), Positives = 99/217 (45%), Gaps = 23/217 (10%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLI--QRFYDVEQGSVRVDGMDVRELDVHWY 1066
+L+ ++ V G L+G +G GKST+ ++ Y VE+G + +DG ++ EL
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPD-E 76
Query: 1067 RKHTA--LVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKD-----G 1119
R L Q PV G F L + + R EF + +K
Sbjct: 77 RARKGLFLAFQYPVEVPG--VTIANF--LRLALQAKLG--REVGVAEFWTKVKKALELLD 130
Query: 1120 YETECGERGVQ--LSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM 1177
++ R + SGG+++R I + ++ PT +LDE S LD+ + +VV ++ +
Sbjct: 131 WDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMR 190
Query: 1178 M-GRTTIVVAH--R-LNTIKKLDSIALVADGRVVERG 1210
+V+ H R LN I+ D + ++ DGRVV G
Sbjct: 191 GPNFGALVITHYQRILNYIQP-DKVHVMMDGRVVATG 226
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 40/176 (22%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKST-AIALVQR-FYDADDGIVRIDGVDIRRLQLK-W 428
+LK NL V G+ AL+G +G+GKST L Y + G + +DG +I L+L
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENI--LELSPD 75
Query: 429 VRREMGL------------VSQEH-------ALFGTSIKDNIMFGKLDATMDEVIAAATA 469
R GL V+ + A G + + K+ ++ + +
Sbjct: 76 ERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESY 135
Query: 470 ANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALD 525
+ R L EG+ SGG+K+R I + ++ P +LDE S LD
Sbjct: 136 LS-----RYLNEGF-----------SGGEKKRNEILQLLVLEPTYAVLDETDSGLD 175
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 7e-08
Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 23/219 (10%)
Query: 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLI--QRFYDVEQGSVRVDGMDVRELDVHWY 1066
+LR S++V PG ++G +G GKST+ + + Y+V G+V G D+ L
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPE-D 93
Query: 1067 RKHTA--LVSQEPVIYAGNIRDNIVFGKLDASENEVVEAA--RAANAHEFISSLKD---- 1118
R + Q PV G N F L + N V + +F +++
Sbjct: 94 RAGEGIFMAFQYPVEIPG--VSNQFF--LQTALNAVRSYRGQETLDRFDFQDLMEEKIAL 149
Query: 1119 -GYETECGERGVQ--LSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDR 1175
+ R V SGG+++R I + + P + +LDE+ S LD+ + +VV + ++
Sbjct: 150 LKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNS 209
Query: 1176 IMM-GRTTIVVAH--R-LNTIKKLDSIALVADGRVVERG 1210
+ R+ I+V H R L+ IK D + ++ GR+V+ G
Sbjct: 210 LRDGKRSFIIVTHYQRILDYIKP-DYVHVLYQGRIVKSG 247
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 7e-05
Identities = 42/187 (22%), Positives = 69/187 (36%), Gaps = 58/187 (31%)
Query: 372 VLKDFNLKVKAGKSVALVGASGSGKST-AIALVQR-FYDADDGIVRIDGVDI-------R 422
+L+ +L V G+ A++G +GSGKST + L R Y+ G V G D+ R
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 94
Query: 423 ------------------------RLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDA 458
+ L VR G + + F +++ I K+
Sbjct: 95 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPE 154
Query: 459 TMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLD 518
+ R + G+ SGG+K+R I + + P + +LD
Sbjct: 155 DLLT--------------RSVNVGF-----------SGGEKKRNDILQMAVLEPELCILD 189
Query: 519 EATSALD 525
E+ S LD
Sbjct: 190 ESDSGLD 196
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 1e-07
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 1130 QLSGGQRQRIAIA------RAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTT 1182
LSGG+R + +A + ++L+LDE T LD + + + ++R +
Sbjct: 57 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 116
Query: 1183 IVVAHRLNTIKKLDSI 1198
I+V+H D +
Sbjct: 117 ILVSHDEELKDAADHV 132
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 1e-06
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 494 LSGGQKQRIAIA------RAIIKNPVILLLDEATSALDSESETLVQNALDQ-ASLGRTTL 546
LSGG++ + +A + +L+LDE T LD E + +++ +
Sbjct: 58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 117
Query: 547 VVAHKLSTVRNADLI 561
+V+H AD +
Sbjct: 118 LVSHDEELKDAADHV 132
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 3e-07
Identities = 21/114 (18%), Positives = 43/114 (37%), Gaps = 12/114 (10%)
Query: 1097 ENEVVEAARAANAHEFISSLKDGYETECGERGV-----QLSGGQRQ------RIAIARAI 1145
E + + + ++ G LSGG+R R+A++ +
Sbjct: 210 SEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYL 269
Query: 1146 IRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKKLDSI 1198
++L+LDE T LD + + + ++R + I+V+H D +
Sbjct: 270 AGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 323
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 3e-07
Identities = 24/170 (14%), Positives = 53/170 (31%), Gaps = 15/170 (8%)
Query: 411 DGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGK---LDATMDEVIAAA 467
++ +D + +L ++ G + + +
Sbjct: 158 REVLNLDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSKIGELASEIFAEFT 217
Query: 468 TAANAHNFIRQLPEGYETKVGERGA-----LLSGGQKQ------RIAIARAIIKNPVILL 516
+ +R V G LSGG++ R+A++ + +L+
Sbjct: 218 EGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLI 277
Query: 517 LDEATSALDSESETLVQNALDQ-ASLGRTTLVVAHKLSTVRNADLIAVVD 565
LDE T LD E + +++ ++V+H AD + +
Sbjct: 278 LDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRIS 327
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 1130 QLSGGQRQRI------AIARAIIRNPT-ILLLDEATSALDVQSEQVVQEALDRIMMGRTT 1182
LSGG++ + AIA A+I N ++LDE T LD + E ++
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 1183 IVVAHRLNTIKKLDSIALV 1201
I++ H D I V
Sbjct: 340 IIITHHRELEDVADVIINV 358
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 15/117 (12%)
Query: 471 NAHNFIRQLPEGYETKVGERGAL-----LSGGQKQRI------AIARAIIKNPV-ILLLD 518
+ +L + +E +V + LSGG++ + AIA A+I N V ++LD
Sbjct: 253 DLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILD 312
Query: 519 EATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVV---DNGCLVEI 572
E T LD + + +++ H AD+I V N V+I
Sbjct: 313 EPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINVKKDGNVSKVKI 369
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* Length = 184 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 383 GKSVALVGASGSGKST-----AIALVQRFYDADDGIVRIDGVDIR 422
LVG GSGKST A AL D D I + G I
Sbjct: 2 APKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIA 46
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 Length = 173 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 6e-04
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 381 KAGKSVALVGASGSGKST-----AIALVQRFYDADDGIVRIDGVDIR 422
+++ LVG G+GKST A L FYD+D I + G D+
Sbjct: 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVG 48
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} Length = 185 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 8e-04
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 381 KAGKSVALVGASGSGKST-----AIALVQRFYDADDGIVRIDGVDIR 422
K ++ L+G G+GK++ A + YD+D I + G DI
Sbjct: 3 KNLTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGADIA 49
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* Length = 173 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 9e-04
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 384 KSVALVGASGSGKST-----AIALVQRFYDADDGIVRIDGVDI 421
+ + +VGA G G +T A AL F D D + G+ +
Sbjct: 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSGMTV 45
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1230 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 9e-94 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-90 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 5e-91 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-87 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-86 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 6e-81 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 5e-83 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-77 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 4e-79 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 6e-75 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 6e-71 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 9e-67 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-49 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 6e-46 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-42 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-38 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 4e-41 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 6e-36 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-40 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-39 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-40 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-36 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 8e-36 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-32 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-35 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 4e-35 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 8e-35 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 3e-33 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-34 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-31 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-34 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-34 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 9e-34 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-33 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-31 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-28 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 5e-30 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-27 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-29 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 5e-28 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 6e-23 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 9e-23 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 6e-15 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 1e-04 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 9e-15 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 3e-04 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-09 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-09 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-09 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-09 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 1e-07 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 1e-06 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 299 bits (766), Expect = 9e-94
Identities = 124/246 (50%), Positives = 174/246 (70%), Gaps = 2/246 (0%)
Query: 348 LDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFY 407
++ +G I+ +HV F Y ++ +LKD NL ++ G++VA VG SG GKST I L+ RFY
Sbjct: 10 IEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 68
Query: 408 DADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAA 467
D G + IDG +I+ +R ++GLV Q++ LF ++K+NI+ G+ AT +EV+ AA
Sbjct: 69 DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAA 128
Query: 468 TAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSE 527
ANAH+FI LP+GY+T+VGERG LSGGQKQR++IAR + NP IL+LDEATSALD E
Sbjct: 129 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 188
Query: 528 SETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYA 587
SE+++Q ALD S RTTL+VAH+LST+ +AD I V++NG +VE GTH +LI + G Y
Sbjct: 189 SESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYE 247
Query: 588 KMAKLQ 593
+ +Q
Sbjct: 248 HLYSIQ 253
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 289 bits (741), Expect = 3e-90
Identities = 111/253 (43%), Positives = 174/253 (68%), Gaps = 1/253 (0%)
Query: 978 DGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVI 1037
+G ++ G+I++ V F Y +A +L+ ++ ++ G +V VG SG GKST+I
Sbjct: 3 NGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLI 61
Query: 1038 GLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASE 1097
LI RFYDV G + +DG ++++ R LV Q+ ++++ +++NI+ G+ A++
Sbjct: 62 NLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATD 121
Query: 1098 NEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEA 1157
EVVEAA+ ANAH+FI +L GY+TE GERGV+LSGGQ+QR++IAR + NP IL+LDEA
Sbjct: 122 EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEA 181
Query: 1158 TSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTH 1217
TSALD++SE ++QEALD + RTT++VAHRL+TI D I ++ +G +VE GT+ +L
Sbjct: 182 TSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA 241
Query: 1218 MRGAFFNLATLQS 1230
+GA+ +L ++Q+
Sbjct: 242 KQGAYEHLYSIQN 254
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 291 bits (746), Expect = 5e-91
Identities = 120/253 (47%), Positives = 177/253 (69%), Gaps = 3/253 (1%)
Query: 342 DTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIA 401
D V+D G++EF +V F+YP R + L++ NLK+ AGK+VALVG SGSGKST +
Sbjct: 1 DEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIAS 59
Query: 402 LVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDA-TM 460
L+ RFYD D+G + +DG D+R L +R ++ LVSQ LF ++ +NI + + + +
Sbjct: 60 LITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSR 119
Query: 461 DEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEA 520
+++ AA A A +FI ++ G +T +GE G LLSGGQ+QRIAIARA++++ IL+LDEA
Sbjct: 120 EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEA 179
Query: 521 TSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLIN 580
TSALD+ESE +Q ALD+ RT+LV+AH+LST+ AD I VV++G +VE GTH++L+
Sbjct: 180 TSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA 239
Query: 581 RIDGHYAKMAKLQ 593
+ G YA++ K+Q
Sbjct: 240 Q-HGVYAQLHKMQ 251
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 281 bits (720), Expect = 2e-87
Identities = 113/254 (44%), Positives = 168/254 (66%), Gaps = 4/254 (1%)
Query: 978 DGTRGSKLQKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVI 1037
+G R + + +G +E R V F YP R + LR ++++ G +V LVG+SG GKST+
Sbjct: 2 EGKR--VIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIA 58
Query: 1038 GLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDA-S 1096
LI RFYD+++G + +DG D+RE + R ALVSQ ++ + +NI + + + S
Sbjct: 59 SLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYS 118
Query: 1097 ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDE 1156
++ EAAR A A +FI+ + +G +T GE GV LSGGQRQRIAIARA++R+ IL+LDE
Sbjct: 119 REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDE 178
Query: 1157 ATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLT 1216
ATSALD +SE+ +Q ALD + RT++V+AHRL+TI++ D I +V DG +VERGT+++L
Sbjct: 179 ATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELL 238
Query: 1217 HMRGAFFNLATLQS 1230
G + L +Q
Sbjct: 239 AQHGVYAQLHKMQF 252
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 279 bits (715), Expect = 1e-86
Identities = 99/247 (40%), Positives = 156/247 (63%), Gaps = 4/247 (1%)
Query: 346 LVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQR 405
L + G ++F+ V F+YP+RPD +VL+ ++ G+ ALVG +GSGKST AL+Q
Sbjct: 3 LTPLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQN 62
Query: 406 FYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFG-KLDATMDEVI 464
Y G + +DG + + + +++ R++ V QE +FG S+++NI +G TM+E+
Sbjct: 63 LYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEIT 122
Query: 465 AAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSAL 524
AAA + AH+FI LP+GY+T+V E G+ LSGGQ+Q +A+ARA+I+ P +L+LD+ATSAL
Sbjct: 123 AAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSAL 182
Query: 525 DSESETLVQNALDQAS--LGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRI 582
D+ S+ V+ L ++ R+ L++ LS V AD I ++ G + E GTH L+ +
Sbjct: 183 DANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK- 241
Query: 583 DGHYAKM 589
G Y M
Sbjct: 242 KGCYWAM 248
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 263 bits (673), Expect = 6e-81
Identities = 90/243 (37%), Positives = 143/243 (58%), Gaps = 3/243 (1%)
Query: 986 QKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD 1045
+ G ++ + V FAYP+RPD LVL+ + ++PG LVG +G GKSTV L+Q Y
Sbjct: 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ 65
Query: 1046 VEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFG-KLDASENEVVEAA 1104
G + +DG + + + + + A V QEP ++ ++++NI +G + E+ AA
Sbjct: 66 PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAA 125
Query: 1105 RAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQ 1164
+ AH FIS L GY+TE E G QLSGGQRQ +A+ARA+IR P +L+LD+ATSALD
Sbjct: 126 VKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDAN 185
Query: 1165 SEQVVQEALDRIM--MGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAF 1222
S+ V++ L R+ +++ L+ +++ D I + G + E GT+ QL +G +
Sbjct: 186 SQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCY 245
Query: 1223 FNL 1225
+ +
Sbjct: 246 WAM 248
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 269 bits (688), Expect = 5e-83
Identities = 111/240 (46%), Positives = 162/240 (67%), Gaps = 1/240 (0%)
Query: 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI 413
+I F +++F Y ++L + NL +K G+ + +VG SGSGKST L+QRFY ++G
Sbjct: 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 414 VRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAH 473
V IDG D+ W+RR++G+V Q++ L SI DNI ++++VI AA A AH
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 474 NFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQ 533
+FI +L EGY T VGE+GA LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE ++
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 534 NALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQ 593
+ + GRT +++AH+LSTV+NAD I V++ G +VE G H +L++ + Y+ + +LQ
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 253 bits (647), Expect = 2e-77
Identities = 106/240 (44%), Positives = 151/240 (62%), Gaps = 2/240 (0%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
I R + F Y ++L ++ +K G +G+VG+SG GKST+ LIQRFY E G V
Sbjct: 2 ITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHE 1111
+DG D+ D +W R+ +V Q+ V+ +I DNI S +V+ AA+ A AH+
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 1112 FISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQE 1171
FIS L++GY T GE+G LSGGQRQRIAIARA++ NP IL+ DEATSALD +SE V+
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 1172 ALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQL-THMRGAFFNLATLQS 1230
+ +I GRT I++AHRL+T+K D I ++ G++VE+G + +L + + L LQS
Sbjct: 181 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQS 240
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 257 bits (659), Expect = 4e-79
Identities = 99/244 (40%), Positives = 152/244 (62%), Gaps = 6/244 (2%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+ HV F+Y +L+D + + + +A G SG GKST +L++RFY G +
Sbjct: 2 LSARHVDFAYDDSEQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFG-KLDATMDEVIAAATAANAH 473
IDG I + L+ R ++G VSQ+ A+ +I++N+ +G + D T +++ A A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 474 NFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQ 533
+F+ +P+ T+VGERG +SGGQ+QR+AIARA ++NP IL+LDEAT++LDSESE++VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 534 NALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQ 593
ALD GRTTLV+AH+LST+ +AD I ++ G + G HN+L+ YAK +
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKY--VS 236
Query: 594 RQFS 597
Q +
Sbjct: 237 EQLT 240
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 246 bits (629), Expect = 6e-75
Identities = 97/239 (40%), Positives = 145/239 (60%), Gaps = 3/239 (1%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
+ R VDFAY +LR S E +P + + G SG GKST+ L++RFY G +
Sbjct: 2 LSARHVDFAYDDSEQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFG-KLDASENEVVEAARAANAH 1110
+DG + + + +R VSQ+ I AG IR+N+ +G + D ++ ++ + A A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 1111 EFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQ 1170
F+ ++ D TE GERGV++SGGQRQR+AIARA +RNP IL+LDEAT++LD +SE +VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 1171 EALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLATLQ 1229
+ALD +M GRTT+V+AHRL+TI D I + G++ G + +L + + Q
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 236 bits (604), Expect = 6e-71
Identities = 72/302 (23%), Positives = 129/302 (42%), Gaps = 29/302 (9%)
Query: 321 ASIAASRIFDRIDRVPEIDGEDTKGLVLDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKV 380
+ F + + D K + F H+ P VLK+ NL +
Sbjct: 8 VTAFWEEGFGELLEKVQQSNGDRK---HSSDENNVSFSHLCLVG--NP---VLKNINLNI 59
Query: 381 KAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEH 440
+ G+ +A+ G++GSGK++ + L+ +A +GI++ G + SQ
Sbjct: 60 EKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFS 106
Query: 441 ALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQ 500
+ +IK+NI+FG + + A I + E T +GE G LSGGQ+
Sbjct: 107 WIMPGTIKENIIFG-VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRA 165
Query: 501 RIAIARAIIKNPVILLLDEATSALDSES-ETLVQNALDQASLGRTTLVVAHKLSTVRNAD 559
RI++ARA+ K+ + LLD LD + E + ++ + + +T ++V K+ +R AD
Sbjct: 166 RISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKAD 225
Query: 560 LIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQRQFSCDDQETIPETHVSSVTRSSGGR 619
I ++ G GT ++L + +K+ + E SS+ + R
Sbjct: 226 KILILHQGSSYFYGTFSELQSLRPDFSSKLMGYD------TFDQFTEERRSSILTETLRR 279
Query: 620 LS 621
S
Sbjct: 280 FS 281
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 224 bits (573), Expect = 9e-67
Identities = 63/238 (26%), Positives = 115/238 (48%), Gaps = 15/238 (6%)
Query: 989 SGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQ 1048
+ V F++ VL+ ++ ++ G + + G +G GK++++ LI + +
Sbjct: 31 KHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE 90
Query: 1049 GSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAAN 1108
G ++ G + SQ I G I++NI+FG + E +A
Sbjct: 91 GIIKHSG-------------RVSFCSQFSWIMPGTIKENIIFG-VSYDEYRYKSVVKACQ 136
Query: 1109 AHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQS-EQ 1167
+ I+ + T GE GV LSGGQR RI++ARA+ ++ + LLD LDV + EQ
Sbjct: 137 LQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQ 196
Query: 1168 VVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNL 1225
V + + ++M +T I+V ++ ++K D I ++ G GT+++L +R F +
Sbjct: 197 VFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSK 254
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 172 bits (438), Expect = 2e-49
Identities = 65/230 (28%), Positives = 109/230 (47%), Gaps = 13/230 (5%)
Query: 355 IEFEHVKFSYPSRPDSI-VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI 413
I+ ++V +Y + I LK+ NL +K G+ V+++G SGSGKST + ++ +G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 414 VRIDGVDIRRL----QLKWVRREMGLVSQEHALF-GTSIKDNIMFGKLDATMDEVIAAAT 468
V ID + L K R ++G V Q+ L + +N+ + +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 469 AANAHNFIRQ--LPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDS 526
A ++ L E + + LSGGQ+QR+AIARA+ NP I+L D+ T ALDS
Sbjct: 122 RKRALECLKMAELEERFANH---KPNQLSGGQQQRVAIARALANNPPIILADQPTGALDS 178
Query: 527 ESETLVQNALD--QASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGT 574
++ + L G+T +VV H ++ R + I + +G +
Sbjct: 179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 163 bits (413), Expect = 6e-46
Identities = 61/230 (26%), Positives = 109/230 (47%), Gaps = 13/230 (5%)
Query: 992 IEMRRVDFAYPSRPDAL-VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
I+++ V Y + + L+ ++ +K G V ++G SG GKST++ +I +G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1051 VRVDGMDVRELD----VHWYRKHTALVSQEPVIYAG-NIRDNIVFGKLDASENEVVEAAR 1105
V +D + +LD R V Q+ + +N+ + + R
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 1106 AANAHEF--ISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDV 1163
A E ++ L++ + + QLSGGQ+QR+AIARA+ NP I+L D+ T ALD
Sbjct: 122 RKRALECLKMAELEERFANH---KPNQLSGGQQQRVAIARALANNPPIILADQPTGALDS 178
Query: 1164 QSEQVVQEALDRI--MMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGT 1211
++ + + + L ++ G+T +VV H +N + + I + DG V
Sbjct: 179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 153 bits (387), Expect = 2e-42
Identities = 61/232 (26%), Positives = 111/232 (47%), Gaps = 14/232 (6%)
Query: 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI 413
E++ E++ + + + NL +K G+ + L+G SG GK+T + ++ + +G
Sbjct: 6 EVKLENLTKRFGNFT---AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 62
Query: 414 VRIDGVDIRRLQLKWVRREMGLVSQEHALFGT-SIKDNIMFGKLDATMDEVIAAATAANA 472
+ D+ L R + +V Q +A++ ++ +NI F + A
Sbjct: 63 IYFGDRDVT--YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWA 120
Query: 473 HNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLV 532
+ Q+ E + LSGGQ+QR+A+ARAI+ P +LL+DE S LD++ +
Sbjct: 121 AELL-QIEELLNRYPAQ----LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAM 175
Query: 533 QNALD--QASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581
+ + Q L TT+ V H D IAV++ G L++IG+ ++ R
Sbjct: 176 RAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 142 bits (360), Expect = 1e-38
Identities = 58/231 (25%), Positives = 109/231 (47%), Gaps = 18/231 (7%)
Query: 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
++++ + + + + + ++ +K G + L+G SGCGK+T + +I + +G
Sbjct: 6 EVKLENLTKRFGNFT---AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 62
Query: 1051 VRVDGMDVRELDVHWYRKHTALVSQEPVIYAG-NIRDNIVFGKLDASENEVVEAARAANA 1109
+ DV L ++ ++V Q ++ + +NI F + R A
Sbjct: 63 IYFGDRDVTYLPPKD--RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWA 120
Query: 1110 HEF--ISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQ 1167
E I L + Y QLSGGQRQR+A+ARAI+ P +LL+DE S LD +
Sbjct: 121 AELLQIEELLNRYPA-------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRV 173
Query: 1168 VVQEALDRIMM--GRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
++ + ++ TTI V H + D IA++ G++++ G+ ++
Sbjct: 174 AMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 224
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 149 bits (378), Expect = 4e-41
Identities = 70/235 (29%), Positives = 117/235 (49%), Gaps = 13/235 (5%)
Query: 355 IEFEHVKFSYPSRPDSI-VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI 413
I+ ++ + +I L + +L V AG+ ++GASG+GKST I V +G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 414 VRIDGVDIRRL---QLKWVRREMGLVSQEHALF-GTSIKDNIMFGKLDATMDEVIAAATA 469
V +DG ++ L +L RR++G++ Q L ++ N+ +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 470 ANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESE 529
+ + L + +++ LSGGQKQR+AIARA+ NP +LL DEATSALD +
Sbjct: 122 TELLSLV-GLGDKHDSYPSN----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176
Query: 530 TLVQNALD--QASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581
+ L LG T L++ H++ V+ D +AV+ NG L+E T +++ +
Sbjct: 177 RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 134 bits (339), Expect = 6e-36
Identities = 62/232 (26%), Positives = 113/232 (48%), Gaps = 13/232 (5%)
Query: 992 IEMRRVDFAYPSRPDAL-VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
I++ + + + L S+ V G G++G SG GKST+I + +GS
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 1051 VRVDGMDVRELDVHW---YRKHTALVSQEPVIYA-GNIRDNIVFGKLDASENEVVEAARA 1106
V VDG ++ L R+ ++ Q + + + N+ + + R
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 1107 ANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSE 1166
+ G + LSGGQ+QR+AIARA+ NP +LL DEATSALD +
Sbjct: 122 TELLSLV-----GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176
Query: 1167 QVVQEALDRI--MMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
+ + E L I +G T +++ H ++ +K++ D +A++++G ++E+ T +++
Sbjct: 177 RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 228
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 147 bits (373), Expect = 1e-40
Identities = 49/237 (20%), Positives = 98/237 (41%), Gaps = 28/237 (11%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
++ + V S L + +V+AG+ + LVG +G+GKST +A + G +
Sbjct: 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSI 55
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHAL-FGTSIKDNIMFGKLDATMDEVIAAATAANAH 473
+ G + + +SQ+ F T + + + D T E++ A
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-- 113
Query: 474 NFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIK-------NPVILLLDEATSALDS 526
+ K+G LSGG+ QR+ +A +++ +LLLDE ++LD
Sbjct: 114 --------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165
Query: 527 ESETLVQNALDQ-ASLGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIGTHNDLINR 581
++ + L G ++ +H L+ R+A ++ G ++ G +++
Sbjct: 166 AQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 143 bits (363), Expect = 3e-39
Identities = 50/234 (21%), Positives = 99/234 (42%), Gaps = 28/234 (11%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
++++ V + L S EV+ G + LVG +G GKST++ + + GS+
Sbjct: 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSI 55
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEP-VIYAGNIRDNIVFGKLDASENEVVEAARAANAH 1110
+ G + H A +SQ+ +A + + + D + E++ A
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-- 113
Query: 1111 EFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIR-------NPTILLLDEATSALDV 1163
+ + G QLSGG+ QR+ +A +++ +LLLDE ++LDV
Sbjct: 114 --------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165
Query: 1164 QSEQVVQEALDRIMM-GRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
+ + + L + G ++ +H LN + L+ G+++ G ++
Sbjct: 166 AQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEV 219
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 148 bits (376), Expect = 1e-40
Identities = 59/245 (24%), Positives = 109/245 (44%), Gaps = 24/245 (9%)
Query: 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI 413
++ + Y VLK +L+ +AG ++++G+SGSGKST + + +G
Sbjct: 2 KLHVIDLHKRYGGHE---VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA 58
Query: 414 VRIDGVDIRRL-------------QLKWVRREMGLVSQEHALFGT-SIKDNIMFGKLDAT 459
+ ++G +I + QL+ +R + +V Q L+ ++ +N+M +
Sbjct: 59 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL 118
Query: 460 -MDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLD 518
+ + A A + LSGGQ+QR++IARA+ P +LL D
Sbjct: 119 GLSKHDARERALKYLAKVGIDERAQGKYPVH----LSGGQQQRVSIARALAMEPDVLLFD 174
Query: 519 EATSALD-SESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHN 576
E TSALD +++ A G+T +VV H++ R+ + + + G + E G
Sbjct: 175 EPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPE 234
Query: 577 DLINR 581
+
Sbjct: 235 QVFGN 239
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 137 bits (346), Expect = 1e-36
Identities = 56/245 (22%), Positives = 108/245 (44%), Gaps = 30/245 (12%)
Query: 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
K+ + + Y VL+ S++ + G + ++G SG GKST + I +G+
Sbjct: 2 KLHVIDLHKRYGGHE---VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA 58
Query: 1051 VRVDGMDVREL-------------DVHWYRKHTALVSQEPVIYAG-NIRDNIVFGKLDA- 1095
+ V+G ++ + + R +V Q +++ + +N++ +
Sbjct: 59 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL 118
Query: 1096 --SENEVVE-AARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTIL 1152
S+++ E A + + Y LSGGQ+QR++IARA+ P +L
Sbjct: 119 GLSKHDARERALKYLAKVGIDERAQGKYPV-------HLSGGQQQRVSIARALAMEPDVL 171
Query: 1153 LLDEATSALDVQ-SEQVVQEALDRIMMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERG 1210
L DE TSALD + +V++ G+T +VV H + + + + + G++ E G
Sbjct: 172 LFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 231
Query: 1211 TYAQL 1215
Q+
Sbjct: 232 DPEQV 236
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 134 bits (338), Expect = 8e-36
Identities = 60/235 (25%), Positives = 111/235 (47%), Gaps = 16/235 (6%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+ V + +++ +L+VK G+ + L+G SG GK+T + ++ + G +
Sbjct: 4 VRLVDVWKVFGEVT---AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 415 RIDGVDI----RRLQLKWVRREMGLVSQEHALF-GTSIKDNIMFGKLDATMDEVIAAATA 469
I + + + + R++ +V Q +AL+ ++ DNI F +
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 470 ANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESE 529
+ L E K E LSGGQ+QR+A+ RAI++ P + L+DE S LD++
Sbjct: 121 REVAELL-GLTELLNRKPRE----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLR 175
Query: 530 TLVQNALD--QASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581
++ L Q LG TT+ V H D IAV++ G L ++G+ +++ ++
Sbjct: 176 VRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 124 bits (313), Expect = 2e-32
Identities = 62/233 (26%), Positives = 105/233 (45%), Gaps = 16/233 (6%)
Query: 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
+ + V + +R+ S+EVK G + L+G SGCGK+T + +I + +G
Sbjct: 3 GVRLVDVWKVFGEVT---AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
Query: 1051 VRVDGMDVRELD----VHWYRKHTALVSQEPVIYAG-NIRDNIVFGKLDASENEVVEAAR 1105
+ + V + + V + A+V Q +Y + DNI F R
Sbjct: 60 IYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR 119
Query: 1106 AANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQS 1165
E + G + +LSGGQRQR+A+ RAI+R P + L+DE S LD +
Sbjct: 120 VREVAELL-----GLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKL 174
Query: 1166 EQVVQEALDRI--MMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
++ L ++ +G TTI V H + D IA++ G + + G+ ++
Sbjct: 175 RVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 133 bits (335), Expect = 3e-35
Identities = 49/240 (20%), Positives = 105/240 (43%), Gaps = 15/240 (6%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+ E++ + L ++ V G ++G +GSGKST I ++ F AD+G V
Sbjct: 5 LRTENIVKYFGEFK---ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 415 RIDGVDIRRLQL-KWVRREMGLVSQE-HALFGTSIKDNIMFGKL---DATMDEVIAAATA 469
+ DI + + + Q L ++ +N++ G++ ++ ++ +
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 470 ANAHNFIRQLPE-----GYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSAL 524
+ + + + LSGGQ + + I RA++ NP ++++DE + +
Sbjct: 122 PKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 181
Query: 525 D-SESETLVQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRI 582
+ + + L+ + G T L++ H+L V N D + V+ NG ++ G + I +
Sbjct: 182 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNV 241
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 132 bits (334), Expect = 4e-35
Identities = 45/239 (18%), Positives = 97/239 (40%), Gaps = 19/239 (7%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
+ + + L S+ V G ++G +G GKST+I +I F ++G V
Sbjct: 5 LRTENIVKYFGEFK---ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 1052 RVDGMDVRELDVH-WYRKHTALVSQEPVIYAG-NIRDNIVFGKLDASENEVV-------- 1101
+ D+ + Y Q P + +N++ G++ E+ +
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 1102 --EAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATS 1159
E A + + L + +LSGGQ + + I RA++ NP ++++DE +
Sbjct: 122 PKEEEMVEKAFKILEFL--KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIA 179
Query: 1160 ALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQLT 1216
+ + + + G T +++ HRL+ + D + ++ +G+++ G +
Sbjct: 180 GVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEI 238
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 130 bits (329), Expect = 8e-35
Identities = 64/231 (27%), Positives = 104/231 (45%), Gaps = 14/231 (6%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
++ ++V ++ V KD NL + G+ V VG SG GKST + ++ G +
Sbjct: 1 VQLQNVTKAWGEVV---VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALF-GTSIKDNIMFGKLDATMDEVIAAATAANAH 473
I + R +G+V Q +AL+ S+ +N+ FG A + +
Sbjct: 58 FIGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115
Query: 474 NFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQ 533
+ QL + K LSGGQ+QR+AI R ++ P + LLDE S LD+ ++
Sbjct: 116 EVL-QLAHLLDRKPKA----LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 170
Query: 534 NALD--QASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581
+ LGRT + V H AD I V+D G + ++G +L +
Sbjct: 171 IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 126 bits (318), Expect = 3e-33
Identities = 62/230 (26%), Positives = 104/230 (45%), Gaps = 18/230 (7%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
++++ V A+ V + ++++ G V VG SGCGKST++ +I + G +
Sbjct: 1 VQLQNVTKAWGEVV---VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIYAG-NIRDNIVFGKLDASENEVVEAARAANAH 1110
+ + + + +V Q +Y ++ +N+ FG A + V R
Sbjct: 58 FIGEKRMNDTPPA--ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115
Query: 1111 E--FISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQV 1168
E ++ L D LSGGQRQR+AI R ++ P++ LLDE S LD
Sbjct: 116 EVLQLAHLLDRKPK-------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ 168
Query: 1169 VQEALDRI--MMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
++ + R+ +GRT I V H L D I ++ GRV + G +L
Sbjct: 169 MRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 218
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 130 bits (328), Expect = 1e-34
Identities = 57/237 (24%), Positives = 105/237 (44%), Gaps = 12/237 (5%)
Query: 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDG 412
G + + ++ + +LK + +++ G+ L+G +G+GK+T + ++ G
Sbjct: 1 GAVVVKDLRKRIGKKE---ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 413 IVRIDGVDIRRLQLKWVRREMGLVSQEHALFGT-SIKDNIMFGKLDATMDEVIAAATAAN 471
IV + G ++ + VR+ + + +E + + + F
Sbjct: 58 IVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER 116
Query: 472 AHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETL 531
A G K+ +R + S G +++ IARA++ NP + +LDE TS LD +
Sbjct: 117 ATEIA-----GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNARE 171
Query: 532 VQNALDQ-ASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRIDGHY 586
V+ L Q + G T LV +H + V D IA++ NG +VE GT +L R
Sbjct: 172 VRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQN 228
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 122 bits (307), Expect = 1e-31
Identities = 62/229 (27%), Positives = 108/229 (47%), Gaps = 12/229 (5%)
Query: 990 GKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQG 1049
G + ++ + + +L+ S E++ G GL+G +G GK+T + +I G
Sbjct: 1 GAVVVKDLRKRIGKKE---ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 1050 SVRVDGMDVRELDVHWYRKHTALVSQEPVIYAG-NIRDNIVFGKLDASENEVVEAARAAN 1108
V V G +V E + H RK + + +E Y + + F + +
Sbjct: 58 IVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER 116
Query: 1109 AHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQV 1168
A E G + +R S G +++ IARA++ NP + +LDE TS LDV + +
Sbjct: 117 ATEIA-----GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNARE 171
Query: 1169 VQEALDRIM-MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
V++ L + G T +V +H + ++ L D IAL+ +G +VE GT +L
Sbjct: 172 VRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 220
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 129 bits (326), Expect = 3e-34
Identities = 57/242 (23%), Positives = 111/242 (45%), Gaps = 15/242 (6%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
+E++ + Y + ++ ++V G V L+G +G GK+T + I ++G +
Sbjct: 7 LEVQSLHVYYGAIH---AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 1052 RVDGMDVRELDVH-WYRKHTALVSQEPVIYAG-NIRDNIVFGKLDASENEVVEAARAANA 1109
+G D+ H R ALV + I+ + +N++ G + + E ++
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL---- 119
Query: 1110 HEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVV 1169
E+I SL + + G LSGG++Q +AI RA++ P +L++DE + L V
Sbjct: 120 -EWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 1170 QEALDRIM-MGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQLTH---MRGAFFN 1224
E + +I G T ++V K+ ++ G++V G ++L +R A+
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEMVRKAYLG 238
Query: 1225 LA 1226
+A
Sbjct: 239 VA 240
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 129 bits (326), Expect = 3e-34
Identities = 56/231 (24%), Positives = 103/231 (44%), Gaps = 12/231 (5%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+E + + Y + +K +LKV G+ V L+GA+G+GK+T ++ + A G +
Sbjct: 7 LEVQSLHVYYGAIH---AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 415 RIDGVDIRRL-QLKWVRREMGLVSQEHALFGT-SIKDNIMFGKLDATMDEVIAAATAANA 472
+G DI R + LV + +F ++ +N+M G + E I
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEW-- 121
Query: 473 HNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALD-SESETL 531
I L + ++ + G LSGG++Q +AI RA++ P +L++DE + L +
Sbjct: 122 ---IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 532 VQNALDQASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581
+ G T L+V A V++ G +V G ++L++
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 126 bits (319), Expect = 9e-34
Identities = 38/216 (17%), Positives = 85/216 (39%), Gaps = 31/216 (14%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
+E + Y D VL+ + ++ G V G +G GK+T + + + G +
Sbjct: 3 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALF-GTSIKDNIMFG----KLDATMDEVIAAATA 469
+GV I ++ + ++ + +E + S++D + + +E++ A +
Sbjct: 59 IYNGVPITKV-----KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 113
Query: 470 ANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESE 529
+ + + LS G +R+ +A ++ N I +LD+ A+D +S+
Sbjct: 114 VEVLDLKK------------KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161
Query: 530 TLVQNALD--QASLGRTTLVVAHKLSTVRNADLIAV 563
V ++ G + +LS D+
Sbjct: 162 HKVLKSILEILKEKGIVIISSREELSY---CDVNEN 194
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 126 bits (319), Expect = 1e-33
Identities = 38/203 (18%), Positives = 92/203 (45%), Gaps = 26/203 (12%)
Query: 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
K+E+R + Y D VL + +M ++ G V G +G GK+T++ I + +G
Sbjct: 2 KLEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 57
Query: 1051 VRVDGMDVRELDVHWYRKHTALVSQEPVIYAG-NIRDNIVFG----KLDASENEVVEAAR 1105
+ +G+ + + + +E ++ ++ D + + ++NE+++A
Sbjct: 58 IIYNGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALE 112
Query: 1106 AANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQS 1165
+ + ++ +LS G +R+ +A ++ N I +LD+ A+D S
Sbjct: 113 SVEVLD------------LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 160
Query: 1166 EQVVQEALDRIMMGRTTIVVAHR 1188
+ V +++ I+ + ++++ R
Sbjct: 161 KHKVLKSILEILKEKGIVIISSR 183
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 121 bits (304), Expect = 2e-31
Identities = 61/235 (25%), Positives = 109/235 (46%), Gaps = 13/235 (5%)
Query: 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI 413
I ++V + + + L + N+ ++ G+ ++G SG+GK+T + ++ G
Sbjct: 3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 414 VRIDGVDIRRLQLKWVR---REMGLVSQEHALFGT-SIKDNIMFGKLDATMDEVIAAATA 469
+ D + V R++G+V Q AL+ + +NI F + M +
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 470 ANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESE 529
+ + LSG Q+QR+A+ARA++K+P +LLLDE S LD+
Sbjct: 122 EEVAKIL-----DIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMR 176
Query: 530 TLVQNALD--QASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581
+ + Q+ LG T LVV+H + + AD + V+ G LV++G DL +
Sbjct: 177 DSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 112 bits (280), Expect = 3e-28
Identities = 52/232 (22%), Positives = 101/232 (43%), Gaps = 13/232 (5%)
Query: 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050
+I ++ V + + + L ++ ++ G G++G SG GK+T + +I G
Sbjct: 3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 1051 VRVDGMDVRELDVHWYR---KHTALVSQEPVIYAG-NIRDNIVFGKLDASENEVVEAARA 1106
+ D V + +V Q +Y +NI F + ++ R
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 1107 ANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSE 1166
+ + +LSG Q+QR+A+ARA++++P++LLLDE S LD +
Sbjct: 122 EEVAKIL-----DIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMR 176
Query: 1167 QVVQEALDRI--MMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
+ + + +G T +VV+H I + D + ++ G++V+ G L
Sbjct: 177 DSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 117 bits (294), Expect = 5e-30
Identities = 71/223 (31%), Positives = 107/223 (47%), Gaps = 16/223 (7%)
Query: 373 LKDFNLKV---KAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWV 429
L +F L V L+G +G+GKS + L+ D G VR++G DI L
Sbjct: 11 LGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPE 68
Query: 430 RREMGLVSQEHALF-GTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVG 488
RR +G V Q++ALF S+ NI +G + E G +
Sbjct: 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKL-------GIAHLLD 121
Query: 489 ERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALD--QASLGRTTL 546
+ A LSGG++QR+A+ARA++ P +LLLDE SA+D +++ ++ L Q L
Sbjct: 122 RKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPIL 181
Query: 547 VVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRIDGHYAK 588
V H L AD +AV+ NG +VE G +L + +G A+
Sbjct: 182 HVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAE 224
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 110 bits (275), Expect = 2e-27
Identities = 61/206 (29%), Positives = 102/206 (49%), Gaps = 14/206 (6%)
Query: 1014 SMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALV 1073
E+ L+G +G GKS + LI ++G VR++G D+ L R+ V
Sbjct: 19 DFEMGRDY-CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFV 75
Query: 1074 SQEPVIYAG-NIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLS 1132
Q+ ++ ++ NI +G + E R I+ L D + +LS
Sbjct: 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD-------RKPARLS 128
Query: 1133 GGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRI--MMGRTTIVVAHRLN 1190
GG+RQR+A+ARA++ P +LLLDE SA+D++++ V+ E L + + V H L
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 1191 TIKKL-DSIALVADGRVVERGTYAQL 1215
L D +A++ +GR+VE+G +L
Sbjct: 189 EAAMLADEVAVMLNGRIVEKGKLKEL 214
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 115 bits (290), Expect = 1e-29
Identities = 66/231 (28%), Positives = 113/231 (48%), Gaps = 18/231 (7%)
Query: 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIV 414
IE E + + + L + +LKV++G+ ++G +G+GK+ + L+ F+ D G +
Sbjct: 2 IEIESLSRKW----KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 415 RIDGVDIRRLQLKWVRREMGLVSQEHALF-GTSIKDNIMFGKLDATMDEVIAAATAANAH 473
+DG D+ L + ++ V Q ++LF ++K N+ FG + + A
Sbjct: 58 LLDGKDVTDLS--PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 474 NFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQ 533
L LSGG++QR+A+ARA++ NP ILLLDE SALD ++ +
Sbjct: 116 KIEHLL--------DRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAR 167
Query: 534 NALD--QASLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581
L T L + H + R AD IAVV +G L+++G ++ +
Sbjct: 168 EMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 111 bits (278), Expect = 5e-28
Identities = 60/232 (25%), Positives = 111/232 (47%), Gaps = 26/232 (11%)
Query: 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV 1051
IE+ + + + L S++V+ G ++G +G GK+ + LI F+ + G +
Sbjct: 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1052 RVDGMDVRELDVHWYRKHTALVSQEPVIYAG-----NIRDNIVFGKLDASENEVVEAARA 1106
+DG DV D+ + A V Q ++ N+ + K+ + V++ AR
Sbjct: 58 LLDGKDVT--DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK-RVLDTARD 114
Query: 1107 ANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSE 1166
+ + LSGG++QR+A+ARA++ NP ILLLDE SALD +++
Sbjct: 115 LKIEHLL-----------DRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQ 163
Query: 1167 QVVQEALDRI--MMGRTTIVVAHRLNTIKKL-DSIALVADGRVVERGTYAQL 1215
+ +E L + T + + H + + D IA+V DG++++ G ++
Sbjct: 164 ENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 95.1 bits (235), Expect = 6e-23
Identities = 17/191 (8%), Positives = 39/191 (20%), Gaps = 29/191 (15%)
Query: 386 VALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGT 445
+ + G G GK+T + + + V + + R + ++
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 446 SIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIA 505
+ G V + A
Sbjct: 63 FFTSKKLVGSYG-----------------------------VNVQYFEELAIPILERAYR 93
Query: 506 RAIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVD 565
A ++++DE + + I +
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP 153
Query: 566 NGCLVEIGTHN 576
L+E+ N
Sbjct: 154 GAVLIELTPEN 164
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 94.7 bits (234), Expect = 9e-23
Identities = 14/188 (7%), Positives = 41/188 (21%), Gaps = 29/188 (15%)
Query: 1023 VGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAG 1082
+ + G+ G GK+T++ I + + E + ++ + +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 1083 NIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIA 1142
+ G + + A
Sbjct: 63 FFTSKKLVGSY-----------------------------GVNVQYFEELAIPILERAYR 93
Query: 1143 RAIIRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVA 1202
A ++++DE + + + + I +
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP 153
Query: 1203 DGRVVERG 1210
++E
Sbjct: 154 GAVLIELT 161
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 75.0 bits (182), Expect = 6e-15
Identities = 51/318 (16%), Positives = 121/318 (38%), Gaps = 5/318 (1%)
Query: 650 FFRLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSL 709
F RL AP ++ ++ I + + ++ F K+ +S + L
Sbjct: 4 FRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD---RSVLLWMPL 60
Query: 710 IFCSLSLISLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSR 769
+ L ++ + + Y +++ G++ +R R+ ++ A+FD++ +
Sbjct: 61 VVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRIT 120
Query: 770 LSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWKLAVVMIAVQPLTILCFYTRKV 829
+E S A + + M+ W+L+++++ + P+ +
Sbjct: 121 YDSEQVASSSSGALITVVREGASIIGLFIMMFYYS--WQLSIILVVLAPIVSIAIRVVSK 178
Query: 830 LLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWL 889
S+S N + T A + + H+ V FG + FD+ + R Q K
Sbjct: 179 RFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSA 238
Query: 890 AGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSD 949
+ I Q + ++ A + ++AG + F +++ + + ++ +
Sbjct: 239 SSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQ 298
Query: 950 LAKGSTAVASVFKILDRQ 967
+G A ++F ILD +
Sbjct: 299 FQRGMAACQTLFAILDSE 316
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 43.0 bits (99), Expect = 1e-04
Identities = 34/166 (20%), Positives = 58/166 (34%), Gaps = 1/166 (0%)
Query: 173 YFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFS 232
Y+SW+LS++ ++ I + K +SK G+ EQ L K V F
Sbjct: 153 YYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFG 212
Query: 233 AERRIIDRYEAILDSTTKLGIKQGTAKGLAVGSTGLSFAIWAFLA-WYGSHLVMFKGETG 291
+ R++ + + G+K +A ++ L ++ + S + T
Sbjct: 213 GQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTA 272
Query: 292 GKIYAAGISFILSGLSLGSALPELKYFTEASIAASRIFDRIDRVPE 337
G I S I L S F A +F +D E
Sbjct: 273 GTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 318
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 74.5 bits (181), Expect = 9e-15
Identities = 42/319 (13%), Positives = 93/319 (29%), Gaps = 2/319 (0%)
Query: 652 RLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIF 711
R L P + + I + L I I ++ ++
Sbjct: 4 RYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAI 63
Query: 712 CSLSLISLAFNLLQHYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLS 771
I + + Y+ + +I + +K+ A ++
Sbjct: 64 GIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISR 123
Query: 772 NEASMVKSLVADRVSLLVQTTSAVAIAMI--MGLVVAWKLAVVMIAVQPLTILCFYTRKV 829
+ ++ L+ + I + + + KL + + + P IL Y
Sbjct: 124 VINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFG 183
Query: 830 LLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSWL 889
L ++ +A E V +V SF + FD+ +A K +
Sbjct: 184 RLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRW 243
Query: 890 AGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSD 949
+ +T + + G L G I+ G + L + + +
Sbjct: 244 NAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTT 303
Query: 950 LAKGSTAVASVFKILDRQS 968
L + ++ VF+++D
Sbjct: 304 LTQSFASMDRVFQLIDEDY 322
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 42.2 bits (97), Expect = 3e-04
Identities = 36/326 (11%), Positives = 98/326 (30%), Gaps = 8/326 (2%)
Query: 13 IFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEV 72
+F + + + I + + ++ + + + +
Sbjct: 5 YLQFV-KPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAI 63
Query: 73 EKCSLYFVYLGLAVMVVAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTT 132
+ + + F+ Y TS + + + +
Sbjct: 64 ---GIALFIFVIVRPPIEFIRQYLAQWTSNKIL---YDIRKKLYNHLQALSARFYANNQV 117
Query: 133 SEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLAFSTYFSWRLSLVAFPTLLLLIIP 192
+VI+ + D ++ + + ++ I L+ + +L+L A I+
Sbjct: 118 GQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILT 177
Query: 193 GMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTTKLG 252
++ L L+++ + + + + + I V SF+ E ++ +
Sbjct: 178 VYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRA 237
Query: 253 IKQGTAKGLAVGSTGLSFAIW-AFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSA 311
+K + + I + G++L + T G + A L L
Sbjct: 238 LKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRL 297
Query: 312 LPELKYFTEASIAASRIFDRIDRVPE 337
+ T++ + R+F ID +
Sbjct: 298 VASFTTLTQSFASMDRVFQLIDEDYD 323
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.2 bits (121), Expect = 1e-07
Identities = 18/153 (11%), Positives = 40/153 (26%), Gaps = 5/153 (3%)
Query: 384 KSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALF 443
+ V L G G GK+T I + V + R + + ++ +S
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 444 GTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQ-----LPEGYETKVGERGALLSGGQ 498
+ + V+ + + + G V + +
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 499 KQRIAIARAIIKNPVILLLDEATSALDSESETL 531
+ I R + P ++L +
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPLALV 154
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (114), Expect = 1e-06
Identities = 20/159 (12%), Positives = 39/159 (24%), Gaps = 7/159 (4%)
Query: 1023 VGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAG 1082
V L G G GK+T+I V + +S +
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63
Query: 1083 NIRDNIVFGKLDASENEVVEAARAANAHEFI-----SSLKDGYETECGERGVQLSGGQRQ 1137
+ + VV+ + S G + ++ +
Sbjct: 64 VGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQL 123
Query: 1138 RIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRI 1176
I R + P ++L T + + E +
Sbjct: 124 FIQAVRQTLSTPGTIIL--GTIPVPKGKPLALVEEIRNR 160
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1230 | |||
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.98 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.97 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.97 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.96 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.77 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.71 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.58 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.43 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.35 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.22 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.21 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.12 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.98 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.98 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.79 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.75 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.2 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.86 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.85 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.82 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.64 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.45 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.4 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.4 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.31 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.29 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.29 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.23 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.2 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.19 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.14 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.07 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.0 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.98 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.92 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.89 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.88 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.85 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.82 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.82 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.65 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.52 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 95.49 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.48 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.47 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.4 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.39 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.36 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 95.29 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.29 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.28 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.27 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 95.26 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.17 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.17 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.13 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.1 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.07 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.99 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.99 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 94.93 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.92 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.92 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.92 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.91 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.91 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.9 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.85 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.82 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.82 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 94.81 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.76 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.75 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 94.74 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 94.72 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.58 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 94.57 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.52 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.51 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.44 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 94.44 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.43 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 94.42 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.39 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.38 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 94.26 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.25 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.24 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.16 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 94.07 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 94.07 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.05 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.04 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.04 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 93.91 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.9 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.9 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 93.83 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 93.82 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.79 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.78 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 93.69 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 93.68 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.62 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 93.61 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.6 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.57 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.56 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.55 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 93.54 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 93.51 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 93.51 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.44 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 93.38 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 93.37 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 93.3 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.29 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.28 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.27 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.26 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.11 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.08 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 93.06 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.06 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 93.03 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 93.03 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.98 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 92.98 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.96 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 92.85 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 92.83 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 92.83 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 92.8 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 92.76 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 92.72 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 92.7 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.68 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 92.66 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 92.66 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 92.59 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 92.58 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.57 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.56 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.55 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 92.55 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 92.48 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 92.47 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 92.47 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 92.46 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 92.41 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 92.36 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.32 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 92.27 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.27 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 92.2 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.19 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 92.12 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 92.11 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 92.06 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 92.0 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 92.0 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 91.95 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 91.94 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.93 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 91.84 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 91.84 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 91.82 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 91.8 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 91.77 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.74 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 91.73 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 91.72 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 91.72 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 91.68 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 91.66 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 91.63 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 91.62 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.6 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 91.6 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 91.57 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 91.55 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 91.54 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 91.5 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 91.46 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 91.4 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 91.4 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 91.38 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 91.29 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 91.27 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 91.22 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.22 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.2 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 91.18 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 91.13 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 91.12 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.08 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 91.08 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 91.05 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 91.04 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 91.03 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 90.93 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 90.91 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 90.88 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 90.88 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.86 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 90.85 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 90.75 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.75 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 90.71 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 90.71 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 90.67 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 90.65 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 90.62 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 90.54 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 90.52 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.51 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.47 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 90.39 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 90.38 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 90.35 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 90.33 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 90.26 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 90.17 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 90.17 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 90.08 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.0 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 89.99 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 89.98 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 89.96 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 89.94 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 89.91 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.9 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 89.88 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 89.86 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 89.84 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 89.79 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 89.73 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 89.65 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.64 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 89.62 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 89.56 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 89.56 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 89.53 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 89.51 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 89.49 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 89.48 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 89.48 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 89.45 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 89.35 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 89.33 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 89.33 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 89.33 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 89.29 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 89.26 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.2 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 89.2 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 89.2 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 89.17 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 89.17 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 89.05 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 89.02 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 88.96 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 88.92 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 88.85 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 88.74 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 88.69 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 88.66 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 88.65 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 88.62 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 88.62 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 88.6 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 88.51 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 88.5 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 88.45 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 88.44 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 88.44 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 88.43 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 88.41 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 88.38 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 88.36 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 88.33 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 88.31 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.3 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 88.26 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 88.21 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 88.18 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 88.16 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 88.16 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 88.14 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 88.12 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 88.05 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 88.04 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 88.02 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 87.98 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 87.93 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 87.88 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 87.84 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 87.68 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 87.61 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 87.6 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 87.59 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 87.56 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 87.51 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 87.49 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 87.49 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 87.46 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 87.45 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 87.42 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 87.35 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 87.33 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 87.32 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 87.31 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 87.31 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 87.3 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 87.28 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 87.25 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 87.24 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 87.19 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 87.17 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 87.15 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 87.14 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 87.12 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 87.11 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 87.0 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 86.99 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 86.96 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 86.92 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 86.88 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 86.76 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 86.71 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 86.63 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 86.56 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 86.56 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 86.47 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 86.46 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 86.46 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 86.39 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 86.38 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 86.37 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 86.36 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 86.33 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 86.21 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 86.19 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 86.17 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 86.12 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 86.11 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 85.99 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 85.97 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 85.94 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 85.89 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 85.87 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 85.86 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 85.84 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 85.69 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 85.6 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 85.5 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 85.49 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 85.47 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 85.45 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 85.45 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 85.37 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 85.35 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 85.33 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 85.29 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 85.25 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 85.22 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 85.18 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 85.03 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 85.01 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 84.93 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 84.86 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 84.8 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 84.8 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 84.78 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 84.69 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 84.56 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 84.55 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 84.53 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 84.44 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 84.41 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 84.38 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 84.31 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 84.27 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 84.26 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 84.12 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 83.96 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 83.9 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 83.67 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 83.64 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 83.4 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 83.17 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 83.05 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 82.98 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 82.52 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 82.48 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 82.41 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 82.38 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 82.37 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 82.35 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 82.29 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 82.22 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 81.98 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 81.83 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 81.61 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 81.51 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 81.45 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 81.22 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 80.62 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 80.55 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 80.17 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=533.43 Aligned_cols=244 Identities=45% Similarity=0.790 Sum_probs=236.6
Q ss_pred CCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH
Q ss_conf 55557099998899879988744311102797189399998489999788999985125699874888994068989688
Q 000909 986 QKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW 1065 (1230)
Q Consensus 986 ~~~~g~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~ 1065 (1230)
...+|+|+|+||+|+||+. +.++|+|+||+|++||++||+||||||||||+++|.|+|+|++|+|.+||.|+++++.++
T Consensus 11 ~~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~ 89 (255)
T d2hyda1 11 EIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGS 89 (255)
T ss_dssp CCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHH
T ss_pred CCCCCEEEEEEEEEEECCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHH
T ss_conf 7778879999889995999-976064438998399899998899980999999997127863000153998753078888
Q ss_pred HHHCCEEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 86501687025667864488886239999999899999998230999981202333211599999992599999999997
Q 000909 1066 YRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAI 1145 (1230)
Q Consensus 1066 lR~~i~~V~Qd~~LF~gTIreNi~~~~~~~s~~~i~~al~~a~l~~~i~~Lp~Gldt~ige~G~~LSgGQrQrlaLARAl 1145 (1230)
||++++||||+|.+|++||+|||.+++++.+++++++|++.+++++++..||+||||.++++|.+||||||||+|||||+
T Consensus 90 lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal 169 (255)
T d2hyda1 90 LRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIF 169 (255)
T ss_dssp HHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred HHHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 63414565101568998799998515867999999999999697999973624201033388898499999999999998
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCCHHH
Q ss_conf 02998778616667868897999999999860998599981591466403989999496798805976895106520888
Q 000909 1146 IRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNL 1225 (1230)
Q Consensus 1146 l~~~~ILiLDEaTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eL~~~~g~y~~l 1225 (1230)
+++|+|+|||||||+||++|+..|.+.|.++.+++|+|+||||++.+..||+|++|++|+|++.|+|+||+++++.|++|
T Consensus 170 ~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y~~l 249 (255)
T d2hyda1 170 LNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHL 249 (255)
T ss_dssp HHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHH
T ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHH
T ss_conf 55998999837654479779999999999875388899996899999859999999899999988999998688499999
Q ss_pred HHHCC
Q ss_conf 64109
Q 000909 1226 ATLQS 1230 (1230)
Q Consensus 1226 ~~~q~ 1230 (1230)
|+.|.
T Consensus 250 ~~~Q~ 254 (255)
T d2hyda1 250 YSIQN 254 (255)
T ss_dssp HTTTT
T ss_pred HHHCC
T ss_conf 99747
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=522.05 Aligned_cols=239 Identities=44% Similarity=0.729 Sum_probs=232.0
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCC
Q ss_conf 09999889987998874431110279718939999848999978899998512569987488899406898968886501
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1070 (1230)
+|+|+||+|+|++. ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|+++
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CEEEEEEEEEECCC-CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf 92999999990899-96037424899849999999999999899999999735788888999999994400246553528
Q ss_pred EEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 68702566786448888623999999989999999823099998120233321159999999259999999999702998
Q 000909 1071 ALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPT 1150 (1230)
Q Consensus 1071 ~~V~Qd~~LF~gTIreNi~~~~~~~s~~~i~~al~~a~l~~~i~~Lp~Gldt~ige~G~~LSgGQrQrlaLARAll~~~~ 1150 (1230)
+||||+|.+|++||+|||.+++++.++++++++++.+++.+++..+|+|++|.++++|.+||||||||+|||||++++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89824465578400035223575543888999999975578887632013443278788669889898754434441651
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCCCHHHHHHC
Q ss_conf 77861666786889799999999986099859998159146640398999949679880597689510-65208886410
Q 000909 1151 ILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHM-RGAFFNLATLQ 1229 (1230)
Q Consensus 1151 ILiLDEaTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eL~~~-~g~y~~l~~~q 1229 (1230)
|||||||||+||+.+++.|.+.|+++.+++|+|+||||++.++.||+|+||++|+|+|.|+|+||+++ ++.|++||+.|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q 239 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHH
T ss_conf 35564776555989999999999998589989999788999984999999989999998899999829987899999981
Q ss_pred C
Q ss_conf 9
Q 000909 1230 S 1230 (1230)
Q Consensus 1230 ~ 1230 (1230)
+
T Consensus 240 ~ 240 (241)
T d2pmka1 240 S 240 (241)
T ss_dssp C
T ss_pred C
T ss_conf 3
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=519.23 Aligned_cols=242 Identities=46% Similarity=0.774 Sum_probs=233.9
Q ss_pred CCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH
Q ss_conf 55570999988998799887443111027971893999984899997889999851256998748889940689896888
Q 000909 987 KISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWY 1066 (1230)
Q Consensus 987 ~~~g~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l 1066 (1230)
...|+|+|+||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||.|+++++..++
T Consensus 9 ~~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~ 87 (253)
T d3b60a1 9 RATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL 87 (253)
T ss_dssp CCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHH
T ss_pred CCCEEEEEEEEEEEECCC-CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHH
T ss_conf 783079999889992999-9763533289985999999999999859999999862168884689878801211106654
Q ss_pred HHCCEEECCCCCCCCCCHHHHHCCCCC-CCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 650168702566786448888623999-9999899999998230999981202333211599999992599999999997
Q 000909 1067 RKHTALVSQEPVIYAGNIRDNIVFGKL-DASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAI 1145 (1230)
Q Consensus 1067 R~~i~~V~Qd~~LF~gTIreNi~~~~~-~~s~~~i~~al~~a~l~~~i~~Lp~Gldt~ige~G~~LSgGQrQrlaLARAl 1145 (1230)
|++++||||+|.+|++|+++|+.++.+ ..+++++++|++.+++.++++.+|+||+|.++++|.+||||||||+|||||+
T Consensus 88 r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal 167 (253)
T d3b60a1 88 RNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL 167 (253)
T ss_dssp HHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHH
T ss_pred HHEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 20687995025447862024332057220899999999999817999973554410143488898499999999999999
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCCHHH
Q ss_conf 02998778616667868897999999999860998599981591466403989999496798805976895106520888
Q 000909 1146 IRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNL 1225 (1230)
Q Consensus 1146 l~~~~ILiLDEaTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eL~~~~g~y~~l 1225 (1230)
+++|+|||||||||+||++++..|++.|+++.+++|+|+||||++.++.||+|+||++|+|+|.|+|+||+++++.|++|
T Consensus 168 ~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y~~l 247 (253)
T d3b60a1 168 LRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQL 247 (253)
T ss_dssp HHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHH
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHH
T ss_conf 54998899516444589889999999998752278899998879999859999999899999988999998689399999
Q ss_pred HHHC
Q ss_conf 6410
Q 000909 1226 ATLQ 1229 (1230)
Q Consensus 1226 ~~~q 1229 (1230)
|+.|
T Consensus 248 ~~~Q 251 (253)
T d3b60a1 248 HKMQ 251 (253)
T ss_dssp HHHT
T ss_pred HHHC
T ss_conf 9972
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=512.69 Aligned_cols=243 Identities=37% Similarity=0.672 Sum_probs=231.6
Q ss_pred CCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH
Q ss_conf 55557099998899879988744311102797189399998489999788999985125699874888994068989688
Q 000909 986 QKISGKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW 1065 (1230)
Q Consensus 986 ~~~~g~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~ 1065 (1230)
...+|.|+|+||+|+||++++.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+++++..+
T Consensus 6 ~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~ 85 (251)
T d1jj7a_ 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRY 85 (251)
T ss_dssp SCCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHH
T ss_pred CCCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHH
T ss_conf 66533699999899889999997674438998499899999999984999999986143787689988998531101378
Q ss_pred HHHCCEEECCCCCCCCCCHHHHHCCCC-CCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 865016870256678644888862399-9999989999999823099998120233321159999999259999999999
Q 000909 1066 YRKHTALVSQEPVIYAGNIRDNIVFGK-LDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARA 1144 (1230)
Q Consensus 1066 lR~~i~~V~Qd~~LF~gTIreNi~~~~-~~~s~~~i~~al~~a~l~~~i~~Lp~Gldt~ige~G~~LSgGQrQrlaLARA 1144 (1230)
+|+++++|||+|.+|++||+||+.++. +..+++++.++++.++++++++.||+|+++.++++|.+||||||||+|||||
T Consensus 86 ~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARa 165 (251)
T d1jj7a_ 86 LHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARA 165 (251)
T ss_dssp HHHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEEC
T ss_conf 88776540456500276346554542101302788999999998999998561211136751676689547048998604
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCC
Q ss_conf 7029987786166678688979999999998609--98599981591466403989999496798805976895106520
Q 000909 1145 IIRNPTILLLDEATSALDVQSEQVVQEALDRIMM--GRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAF 1222 (1230)
Q Consensus 1145 ll~~~~ILiLDEaTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eL~~~~g~y 1222 (1230)
++++|+|+|||||||+||+.++..|++.|.++.+ ++|+|+||||+++++.||+|++|++|+|+|.|+|+||++++|.|
T Consensus 166 l~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y 245 (251)
T d1jj7a_ 166 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCY 245 (251)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHH
T ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHH
T ss_conf 45687078716757656853689999999997650698999995979999859999999899999988999998597588
Q ss_pred HHHHHH
Q ss_conf 888641
Q 000909 1223 FNLATL 1228 (1230)
Q Consensus 1223 ~~l~~~ 1228 (1230)
++||++
T Consensus 246 ~~l~~A 251 (251)
T d1jj7a_ 246 WAMVQA 251 (251)
T ss_dssp HHHHCC
T ss_pred HHHHCC
T ss_conf 999629
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=508.22 Aligned_cols=237 Identities=41% Similarity=0.700 Sum_probs=228.8
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCE
Q ss_conf 99998899879988744311102797189399998489999788999985125699874888994068989688865016
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1071 (1230)
|+++||+|+|++. +++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+|.+||.|+++++.+++|++|+
T Consensus 2 le~knvsf~Y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCCC--CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf 7999889987999--84142258998599999999999997999999999960989877988998844246788874367
Q ss_pred EECCCCCCCCCCHHHHHCCCC-CCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 870256678644888862399-9999989999999823099998120233321159999999259999999999702998
Q 000909 1072 LVSQEPVIYAGNIRDNIVFGK-LDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPT 1150 (1230)
Q Consensus 1072 ~V~Qd~~LF~gTIreNi~~~~-~~~s~~~i~~al~~a~l~~~i~~Lp~Gldt~ige~G~~LSgGQrQrlaLARAll~~~~ 1150 (1230)
||||||.+|++||+||+.++. +..++++++++++.+++.+++..+|+|++|.++++|.+||||||||+|||||++++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97566545785345430124455542356778999997555420374210152368789879999999999999852998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCCHHHHHHCC
Q ss_conf 77861666786889799999999986099859998159146640398999949679880597689510652088864109
Q 000909 1151 ILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLATLQS 1230 (1230)
Q Consensus 1151 ILiLDEaTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eL~~~~g~y~~l~~~q~ 1230 (1230)
|||||||||+||++++..|++.|+++.+++|+|+||||++.+..||+|++|++|+|++.|+|+||+++++.|++|++.|.
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l~~~Q~ 239 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQL 239 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHCCC
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHHHHH
T ss_conf 99965886556988999998878887179989999787999984999999989999999999999868969999999985
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=479.09 Aligned_cols=245 Identities=51% Similarity=0.837 Sum_probs=234.0
Q ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH
Q ss_conf 67866418999888988999997540130499838979999848999489999999417879986699899626988888
Q 000909 348 LDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLK 427 (1230)
Q Consensus 348 ~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~ 427 (1230)
.+..+|.|+|+||+|+|++. +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+++++..
T Consensus 10 l~~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~ 88 (255)
T d2hyda1 10 IEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTG 88 (255)
T ss_dssp CCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHH
T ss_pred CCCCCCEEEEEEEEEEECCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHH
T ss_conf 77778879999889995999-97606443899839989999889998099999999712786300015399875307888
Q ss_pred HHHHHEEEECCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 87501078806766660308999863999999989999999973999998388861010028999889369999999998
Q 000909 428 WVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARA 507 (1230)
Q Consensus 428 ~~r~~i~~v~Q~~~l~~~ti~~Ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARa 507 (1230)
++|++++||+|+|++|++||+|||.+|.+..++++++++++.+++++++..+|+|++|.++++|.+||||||||++||||
T Consensus 89 ~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARa 168 (255)
T d2hyda1 89 SLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARI 168 (255)
T ss_dssp HHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHH
T ss_pred HHHHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 86341456510156899879999851586799999999999969799997362420103338889849999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHHHCCCHHH
Q ss_conf 60299889983777899979799999999984299739998229202330598999959869782593678730282789
Q 000909 508 IIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYA 587 (1230)
Q Consensus 508 l~~~~~ililDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 587 (1230)
++++|+|+|||||||+||++++..+.+.+....+++|+|+||||++.+..||+|++|++|+|++.|+|+||+++ ++.|+
T Consensus 169 l~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~-~~~y~ 247 (255)
T d2hyda1 169 FLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYE 247 (255)
T ss_dssp HHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHHH
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHH
T ss_conf 85599899983765447977999999999987538889999689999985999999989999998899999868-84999
Q ss_pred HHHHHHH
Q ss_conf 9999840
Q 000909 588 KMAKLQR 594 (1230)
Q Consensus 588 ~~~~~~~ 594 (1230)
++|+.|.
T Consensus 248 ~l~~~Q~ 254 (255)
T d2hyda1 248 HLYSIQN 254 (255)
T ss_dssp HHHTTTT
T ss_pred HHHHHCC
T ss_conf 9999747
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=475.30 Aligned_cols=240 Identities=46% Similarity=0.768 Sum_probs=231.2
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHE
Q ss_conf 18999888988999997540130499838979999848999489999999417879986699899626988888875010
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREM 433 (1230)
Q Consensus 354 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i 433 (1230)
+|+|+||+|+|+.. ++++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||.|+.+++..++|+++
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CEEEEEEEEEECCC-CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf 92999999990899-96037424899849999999999999899999999735788888999999994400246553528
Q ss_pred EEECCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 78806766660308999863999999989999999973999998388861010028999889369999999998602998
Q 000909 434 GLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPV 513 (1230)
Q Consensus 434 ~~v~Q~~~l~~~ti~~Ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARal~~~~~ 513 (1230)
+||+|+|++|++||+|||.++.+..+.+++..+++.+++++++..+|+|++|.++++|.+||||||||++||||++++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89824465578400035223575543888999999975578887632013443278788669889898754434441651
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHHHCCCHHHHHHHHH
Q ss_conf 89983777899979799999999984299739998229202330598999959869782593678730282789999984
Q 000909 514 ILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQ 593 (1230)
Q Consensus 514 ililDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 593 (1230)
|+|||||||+||+.+++.+.+.+.+..+++|+|+||||++.++.||+|++|++|+|++.|+|++|++++++.|+++++.|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q 239 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHH
T ss_conf 35564776555989999999999998589989999788999984999999989999998899999829987899999981
Q ss_pred H
Q ss_conf 0
Q 000909 594 R 594 (1230)
Q Consensus 594 ~ 594 (1230)
.
T Consensus 240 ~ 240 (241)
T d2pmka1 240 S 240 (241)
T ss_dssp C
T ss_pred C
T ss_conf 3
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=469.18 Aligned_cols=245 Identities=48% Similarity=0.794 Sum_probs=233.2
Q ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH
Q ss_conf 67866418999888988999997540130499838979999848999489999999417879986699899626988888
Q 000909 348 LDEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLK 427 (1230)
Q Consensus 348 ~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~ 427 (1230)
.+...|.|+|+||+|+|++. +.++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||.++++++..
T Consensus 7 ~~~~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~ 85 (253)
T d3b60a1 7 IDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLA 85 (253)
T ss_dssp CSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHH
T ss_pred CCCCCEEEEEEEEEEEECCC-CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHH
T ss_conf 67783079999889992999-97635332899859999999999998599999998621688846898788012111066
Q ss_pred HHHHHEEEECCCCCCCCHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 87501078806766660308999863999-99998999999997399999838886101002899988936999999999
Q 000909 428 WVRREMGLVSQEHALFGTSIKDNIMFGKL-DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIAR 506 (1230)
Q Consensus 428 ~~r~~i~~v~Q~~~l~~~ti~~Ni~~g~~-~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lAR 506 (1230)
++|++++||+|+|++|++|+++|+.++.+ ..+++++.++++.++++++++.+|+|++|.++++|.+||||||||++|||
T Consensus 86 ~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiAR 165 (253)
T d3b60a1 86 SLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 165 (253)
T ss_dssp HHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHH
T ss_pred HHHHEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 54206879950254478620243320572208999999999998179999735544101434888984999999999999
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHHHCCCHH
Q ss_conf 86029988998377789997979999999998429973999822920233059899995986978259367873028278
Q 000909 507 AIIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHY 586 (1230)
Q Consensus 507 al~~~~~ililDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 586 (1230)
|++++|+|+|||||||+||+.++..+.+.++.+.+++|+|+||||++.+..||+|++|++|+|++.|+|++|+++ ++.|
T Consensus 166 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~-~~~y 244 (253)
T d3b60a1 166 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVY 244 (253)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSH
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHH
T ss_conf 995499889951644458988999999999875227889999887999985999999989999998899999868-9399
Q ss_pred HHHHHHHH
Q ss_conf 99999840
Q 000909 587 AKMAKLQR 594 (1230)
Q Consensus 587 ~~~~~~~~ 594 (1230)
+++++.|.
T Consensus 245 ~~l~~~Q~ 252 (253)
T d3b60a1 245 AQLHKMQF 252 (253)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHCC
T ss_conf 99999725
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=463.20 Aligned_cols=242 Identities=40% Similarity=0.729 Sum_probs=228.1
Q ss_pred CCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH
Q ss_conf 78664189998889889999975401304998389799998489994899999994178799866998996269888888
Q 000909 349 DEVRGEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKW 428 (1230)
Q Consensus 349 ~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~ 428 (1230)
...+|.|+|+||+|+||++++..+|+|+||+|++||+++||||||||||||+++|.|+++|++|+|.+||.|+.+++..+
T Consensus 6 ~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~ 85 (251)
T d1jj7a_ 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRY 85 (251)
T ss_dssp SCCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHH
T ss_pred CCCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHH
T ss_conf 66533699999899889999997674438998499899999999984999999986143787689988998531101378
Q ss_pred HHHHEEEECCCCCCCCHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 7501078806766660308999863999-999989999999973999998388861010028999889369999999998
Q 000909 429 VRREMGLVSQEHALFGTSIKDNIMFGKL-DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARA 507 (1230)
Q Consensus 429 ~r~~i~~v~Q~~~l~~~ti~~Ni~~g~~-~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARa 507 (1230)
+|++++||+|+|++|++|++||+.+|.. ....+++.++++.++++++++.+|+|+++.++++|.+||||||||++||||
T Consensus 86 ~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARa 165 (251)
T d1jj7a_ 86 LHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARA 165 (251)
T ss_dssp HHHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEEC
T ss_conf 88776540456500276346554542101302788999999998999998561211136751676689547048998604
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHHHCCCH
Q ss_conf 602998899837778999797999999999842--997399982292023305989999598697825936787302827
Q 000909 508 IIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGH 585 (1230)
Q Consensus 508 l~~~~~ililDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 585 (1230)
++++|+|+|||||||+||+.++..+.+.+.+.. .++|+|+||||++.+..||+|++|++|+|++.|+|+||+++ ++.
T Consensus 166 l~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~-~~~ 244 (251)
T d1jj7a_ 166 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGC 244 (251)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSH
T ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCH
T ss_conf 4568707871675765685368999999999765069899999597999985999999989999998899999859-758
Q ss_pred HHHHHH
Q ss_conf 899999
Q 000909 586 YAKMAK 591 (1230)
Q Consensus 586 ~~~~~~ 591 (1230)
|+.+++
T Consensus 245 y~~l~~ 250 (251)
T d1jj7a_ 245 YWAMVQ 250 (251)
T ss_dssp HHHHHC
T ss_pred HHHHHC
T ss_conf 899962
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=458.14 Aligned_cols=237 Identities=42% Similarity=0.691 Sum_probs=225.1
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEE
Q ss_conf 89998889889999975401304998389799998489994899999994178799866998996269888888750107
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
|+++||+|+|++. +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++++++..++|++++
T Consensus 2 le~knvsf~Y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCCC--CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf 7999889987999--84142258998599999999999997999999999960989877988998844246788874367
Q ss_pred EECCCCCCCCHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 8806766660308999863999-999989999999973999998388861010028999889369999999998602998
Q 000909 435 LVSQEHALFGTSIKDNIMFGKL-DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPV 513 (1230)
Q Consensus 435 ~v~Q~~~l~~~ti~~Ni~~g~~-~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARal~~~~~ 513 (1230)
||+|+|++|++|++||+.++.. ...+++++++++.+.+.+++..+|++++|.++++|.+||||||||++||||++++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97566545785345430124455542356778999997555420374210152368789879999999999999852998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHHHCCCHHHHHHHHH
Q ss_conf 89983777899979799999999984299739998229202330598999959869782593678730282789999984
Q 000909 514 ILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMAKLQ 593 (1230)
Q Consensus 514 ililDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 593 (1230)
|+|||||||+||+.++..+.+.+++..+++|+|+||||++.+..||+|++|++|+|++.|+|+||+++ ++.|+++++.|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~l~~~Q 238 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHCC
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CHHHHHHHHHH
T ss_conf 99965886556988999998878887179989999787999984999999989999999999999868-96999999998
Q ss_pred H
Q ss_conf 0
Q 000909 594 R 594 (1230)
Q Consensus 594 ~ 594 (1230)
.
T Consensus 239 ~ 239 (242)
T d1mv5a_ 239 L 239 (242)
T ss_dssp C
T ss_pred H
T ss_conf 5
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=422.02 Aligned_cols=219 Identities=28% Similarity=0.486 Sum_probs=201.1
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHC
Q ss_conf 70999988998799887443111027971893999984899997889999851256998748889940689896888650
Q 000909 990 GKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKH 1069 (1230)
Q Consensus 990 g~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 1069 (1230)
+.|.|++++|.+ .|+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+|| +
T Consensus 37 ~~i~~~~~~~~g-----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~ 98 (281)
T d1r0wa_ 37 NNVSFSHLCLVG-----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R 98 (281)
T ss_dssp ---CHHHHHHTT-----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred CCEEEEECCCCC-----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------E
T ss_conf 967999769899-----7677375999859999999989998299999999579747882899999-------------9
Q ss_pred CEEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 16870256678644888862399999998999999982309999812023332115999999925999999999970299
Q 000909 1070 TALVSQEPVIYAGNIRDNIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNP 1149 (1230)
Q Consensus 1070 i~~V~Qd~~LF~gTIreNi~~~~~~~s~~~i~~al~~a~l~~~i~~Lp~Gldt~ige~G~~LSgGQrQrlaLARAll~~~ 1149 (1230)
++|+||++.+|++||++|+.++. ..++.+.+++++.+.+.+++..+|+++++.++++|.+||||||||++|||||+++|
T Consensus 99 i~~v~Q~~~l~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p 177 (281)
T d1r0wa_ 99 VSFCSQFSWIMPGTIKENIIFGV-SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDA 177 (281)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTS-CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCCCEEECCCCCCC-CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99981643026760321420333-45605799999997769999846123323555542377999999999999998696
Q ss_pred CEEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCCHHHHH
Q ss_conf 87786166678688979999999-9986099859998159146640398999949679880597689510652088864
Q 000909 1150 TILLLDEATSALDVQSEQVVQEA-LDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTYAQLTHMRGAFFNLAT 1227 (1230)
Q Consensus 1150 ~ILiLDEaTS~LD~~te~~i~~~-l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~~eL~~~~g~y~~l~~ 1227 (1230)
+|||||||||+||+.++..+.+. +....+++|+|+||||++.++.||||++|++|+|++.|+|+||++.++.|++.+.
T Consensus 178 ~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~~~~ 256 (281)
T d1r0wa_ 178 DLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLM 256 (281)
T ss_dssp SEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHHHHHHH
T ss_pred CCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCHHHHHHC
T ss_conf 3513338554489899999999999886289999999252899985999999989999998789999605948999872
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=386.41 Aligned_cols=218 Identities=29% Similarity=0.456 Sum_probs=196.4
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHH
Q ss_conf 41899988898899999754013049983897999984899948999999941787998669989962698888887501
Q 000909 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRRE 432 (1230)
Q Consensus 353 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~ 432 (1230)
..|.|+|++|. .+++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++| +
T Consensus 37 ~~i~~~~~~~~-----g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~ 98 (281)
T d1r0wa_ 37 NNVSFSHLCLV-----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R 98 (281)
T ss_dssp ---CHHHHHHT-----TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred CCEEEEECCCC-----CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------E
T ss_conf 96799976989-----97677375999859999999989998299999999579747882899999-------------9
Q ss_pred EEEECCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 07880676666030899986399999998999999997399999838886101002899988936999999999860299
Q 000909 433 MGLVSQEHALFGTSIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNP 512 (1230)
Q Consensus 433 i~~v~Q~~~l~~~ti~~Ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARal~~~~ 512 (1230)
++|++|+|++|++|++||+.+|. .....+...+++.+.+.+++..+|+++++.++++|.+||||||||++||||++++|
T Consensus 99 i~~v~Q~~~l~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p 177 (281)
T d1r0wa_ 99 VSFCSQFSWIMPGTIKENIIFGV-SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDA 177 (281)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTS-CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCCCEEECCCCCCC-CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99981643026760321420333-45605799999997769999846123323555542377999999999999998696
Q ss_pred CEEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHHHCCCHHHHHH
Q ss_conf 88998377789997979999999-9984299739998229202330598999959869782593678730282789999
Q 000909 513 VILLLDEATSALDSESETLVQNA-LDQASLGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTHNDLINRIDGHYAKMA 590 (1230)
Q Consensus 513 ~ililDe~ts~lD~~~~~~i~~~-i~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 590 (1230)
+|++||||||+||+.++..+.+. +.....++|+|+|||+++.+..||+|++|++|+|++.|+|+||++. ++.|....
T Consensus 178 ~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~-~~~~~~~~ 255 (281)
T d1r0wa_ 178 DLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL-RPDFSSKL 255 (281)
T ss_dssp SEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-CHHHHHHH
T ss_pred CCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCC-CCHHHHHH
T ss_conf 3513338554489899999999999886289999999252899985999999989999998789999605-94899987
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=371.37 Aligned_cols=217 Identities=26% Similarity=0.424 Sum_probs=187.7
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCC
Q ss_conf 09999889987998874431110279718939999848999978899998512569987488899406898968886501
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1070 (1230)
.|+++|++++|+ +..+|+|+||+|++||.+||+||||||||||++++.|+++|++|+|.+||+|++..+.. |++|
T Consensus 6 ~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i 80 (239)
T d1v43a3 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 80 (239)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEE
T ss_conf 499987999999---99998130678879989999999998299999999758999878799916413547700--0158
Q ss_pred EEECCCCCCCCC-CHHHHHCCCCC--CCCHHHH----HHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 687025667864-48888623999--9999899----9999982309999812023332115999999925999999999
Q 000909 1071 ALVSQEPVIYAG-NIRDNIVFGKL--DASENEV----VEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIAR 1143 (1230)
Q Consensus 1071 ~~V~Qd~~LF~g-TIreNi~~~~~--~~s~~~i----~~al~~a~l~~~i~~Lp~Gldt~ige~G~~LSgGQrQrlaLAR 1143 (1230)
+||||++.+|.. |++||+.++.. ..+.+++ .++++..++ +.........||||||||++|||
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSGGq~QRvaiAr 149 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQI-----------EELLNRYPAQLSGGQRQRVAVAR 149 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTC-----------GGGTTSCTTTCCSSCHHHHHHHH
T ss_pred EEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-----------HHHHCCCHHHCCHHHHHHHHHHH
T ss_conf 9980033534222099999999987399999999999999987598-----------55660995469999988999976
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHCC-
Q ss_conf 9702998778616667868897999999999860--99859998159146640-3989999496798805976895106-
Q 000909 1144 AIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTHMR- 1219 (1230)
Q Consensus 1144 All~~~~ILiLDEaTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL~~~~- 1219 (1230)
||+.+|+||+||||||+||+.+...+++.|+++. .++|+|+|||+++.+.. ||||++|++|+|++.|+|+|+.+++
T Consensus 150 aL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~ 229 (239)
T d1v43a3 150 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN 229 (239)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred HHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 64049982430688666898999899999999987319807999489999998699999998999999859999986899
Q ss_pred CCCH
Q ss_conf 5208
Q 000909 1220 GAFF 1223 (1230)
Q Consensus 1220 g~y~ 1223 (1230)
..|-
T Consensus 230 ~~~~ 233 (239)
T d1v43a3 230 SVFV 233 (239)
T ss_dssp BHHH
T ss_pred CHHH
T ss_conf 9899
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=376.98 Aligned_cols=216 Identities=28% Similarity=0.482 Sum_probs=189.2
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCE
Q ss_conf 99998899879988744311102797189399998489999788999985125699874888994068989688865016
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1071 (1230)
|+++||+++|. +..+|+|+||+|++||.+||+||||||||||++++.|+++|++|+|++||.++.+.+. .|++|+
T Consensus 1 Iev~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVG 75 (232)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEE
T ss_pred CEEEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--HHCEEE
T ss_conf 99999999989---9999811177886998999998999829999999965878888889999997788864--443222
Q ss_pred EECCCCCCCCC-CHHHHHCCCCC--CCC----HHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 87025667864-48888623999--999----989999999823099998120233321159999999259999999999
Q 000909 1072 LVSQEPVIYAG-NIRDNIVFGKL--DAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARA 1144 (1230)
Q Consensus 1072 ~V~Qd~~LF~g-TIreNi~~~~~--~~s----~~~i~~al~~a~l~~~i~~Lp~Gldt~ige~G~~LSgGQrQrlaLARA 1144 (1230)
+|||+|.+|.. |++||+.++.. ..+ ++++.+.++..++.++.++. ...||||||||++||||
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~-----------~~~LSGGqkQRvaiAra 144 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRK-----------PKALSGGQRQRVAIGRT 144 (232)
T ss_dssp EECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHH
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCC-----------HHHCCHHHHHHHHHHHH
T ss_conf 3433420264333788978999875998899999999999757886566489-----------65699999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHC-CC
Q ss_conf 702998778616667868897999999999860--99859998159146640-398999949679880597689510-65
Q 000909 1145 IIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTHM-RG 1220 (1230)
Q Consensus 1145 ll~~~~ILiLDEaTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL~~~-~g 1220 (1230)
|+.+|++|+|||||++||+.+...|++.|.++. .++|+|+|||++..+.. ||||++|++|+|++.|+|+|++++ ..
T Consensus 145 L~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~ 224 (232)
T d2awna2 145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 224 (232)
T ss_dssp HHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCC
T ss_conf 70399889975888788988998999999999874298799994899999996999999979999998089999738999
Q ss_pred CCH
Q ss_conf 208
Q 000909 1221 AFF 1223 (1230)
Q Consensus 1221 ~y~ 1223 (1230)
.|-
T Consensus 225 ~~v 227 (232)
T d2awna2 225 RFV 227 (232)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 799
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=377.05 Aligned_cols=211 Identities=29% Similarity=0.507 Sum_probs=187.4
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCE
Q ss_conf 99998899879988744311102797189399998489999788999985125699874888994068989688865016
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1071 (1230)
|+++||+++|++ .+|+|+||+|++||.+||+|||||||||++++|.|+.+|++|+|++||.|+.+.+.. |++++
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig 75 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEECC----EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCE
T ss_conf 899989999499----788433789879989999989998299999999647688878899956734652165--74056
Q ss_pred EECCCCCCCCC-CHHHHHCCCCC---CCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 87025667864-48888623999---999989999999823099998120233321159999999259999999999702
Q 000909 1072 LVSQEPVIYAG-NIRDNIVFGKL---DASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIR 1147 (1230)
Q Consensus 1072 ~V~Qd~~LF~g-TIreNi~~~~~---~~s~~~i~~al~~a~l~~~i~~Lp~Gldt~ige~G~~LSgGQrQrlaLARAll~ 1147 (1230)
+|||++.+|.. ||+||+.++.. ....+++.++++..++.++.+ .....||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSGG~~QRvaiAraL~~ 144 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-----------RNPLTLSGGEQQRVALARALVT 144 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTT-----------SCGGGSCHHHHHHHHHHHHTTS
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHH-----------CCHHHCCHHHHCCHHHHHHHHC
T ss_conf 15121111746657788888776405538999999999825655575-----------8955479998401403043443
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 998778616667868897999999999860--99859998159146640-3989999496798805976895106
Q 000909 1148 NPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTHMR 1219 (1230)
Q Consensus 1148 ~~~ILiLDEaTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL~~~~ 1219 (1230)
+|++|+||||||+||+.+...+++.|.++. .+.|+|+|||+++.+.. ||||++|++|+|++.|+|+|+++++
T Consensus 145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P 219 (229)
T d3d31a2 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (229)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 677144347876799899999999999998647968999749999999969999999799999986999998689
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=377.52 Aligned_cols=221 Identities=28% Similarity=0.441 Sum_probs=189.5
Q ss_pred EEEEEEEEECCCCCC-CCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 999988998799887-44311102797189399998489999788999985125699874888994068989688---86
Q 000909 992 IEMRRVDFAYPSRPD-ALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW---YR 1067 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~---lR 1067 (1230)
|+++||+++|+.+.. ..+|+|+||+|++||.+||+||||||||||+++|.|+.+|++|+|.+||.|+...+.+. +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred HCCEEECCCCCCCCC-CHHHHHCCCC--CCCC----HHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 501687025667864-4888862399--9999----98999999982309999812023332115999999925999999
Q 000909 1068 KHTALVSQEPVIYAG-NIRDNIVFGK--LDAS----ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIA 1140 (1230)
Q Consensus 1068 ~~i~~V~Qd~~LF~g-TIreNi~~~~--~~~s----~~~i~~al~~a~l~~~i~~Lp~Gldt~ige~G~~LSgGQrQrla 1140 (1230)
+++++|||++.+|+. |++||+.++. ...+ .+++.++++.+++.++. ......||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~-----------~~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH-----------DSYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTT-----------SSCBSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH-----------HCCHHHCCHHHHHHHH
T ss_conf 16643022522279964999999999984999899999999999976990355-----------4894349999998999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9999702998778616667868897999999999860-9-9859998159146640-39899994967988059768951
Q 000909 1141 IARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-M-GRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTH 1217 (1230)
Q Consensus 1141 LARAll~~~~ILiLDEaTS~LD~~te~~i~~~l~~~~-~-~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL~~ 1217 (1230)
|||||..+|++||+||||++||+.+...|++.|.++. + +.|+|+|||++..+.. ||||++|++|+|+|.|+|+|+++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999999879999972
Q ss_pred C-CCCCH
Q ss_conf 0-65208
Q 000909 1218 M-RGAFF 1223 (1230)
Q Consensus 1218 ~-~g~y~ 1223 (1230)
+ ...|.
T Consensus 231 ~P~~~~t 237 (240)
T d3dhwc1 231 HPKTPLA 237 (240)
T ss_dssp SSCCTTT
T ss_pred CCCCHHH
T ss_conf 8998577
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=378.56 Aligned_cols=217 Identities=26% Similarity=0.418 Sum_probs=187.5
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHH
Q ss_conf 099998899879988744311102797189399998489999788999985125699874888994068989---68886
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELD---VHWYR 1067 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~---~~~lR 1067 (1230)
.|+++||+++|+.. +..+|+|+||+|++||.+||+|||||||||++++|.|+++|++|+|.+||+|+...+ ...+|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEEEEEEECCC-CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHH
T ss_conf 89997579998899-98998040789879989999989998099999999758688874599999995137311153120
Q ss_pred HCCEEECCCCCCCCC-CHHHHHCCCCC--CCCH----HHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 501687025667864-48888623999--9999----8999999982309999812023332115999999925999999
Q 000909 1068 KHTALVSQEPVIYAG-NIRDNIVFGKL--DASE----NEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIA 1140 (1230)
Q Consensus 1068 ~~i~~V~Qd~~LF~g-TIreNi~~~~~--~~s~----~~i~~al~~a~l~~~i~~Lp~Gldt~ige~G~~LSgGQrQrla 1140 (1230)
+++++|+|+|.||+. |++||+.++.. ..+. +.+.++++.+++.++.+ .....||||||||++
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------~~p~~LSGGqkQRva 150 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLN-----------HFPRELSGAQQQRVA 150 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTT-----------SCGGGSCHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHH-----------CCHHHCCHHHHHHHH
T ss_conf 451477304334666657777665567613799999999999986659176664-----------895459999985899
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHH-HCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9999702998778616667868897999999999860--9985999815914664-039899994967988059768951
Q 000909 1141 IARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQLTH 1217 (1230)
Q Consensus 1141 LARAll~~~~ILiLDEaTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eL~~ 1217 (1230)
|||||..+|++|++|||||+||+.+...+++.|+++. .+.|+|+|||+++.+. .||||++|++|+|++.|+|+|+.+
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 87577604661454478667998998899899999986359879999799999999699999998999999869999986
Q ss_pred CC
Q ss_conf 06
Q 000909 1218 MR 1219 (1230)
Q Consensus 1218 ~~ 1219 (1230)
.+
T Consensus 231 ~P 232 (242)
T d1oxxk2 231 NP 232 (242)
T ss_dssp SC
T ss_pred CC
T ss_conf 89
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=376.54 Aligned_cols=218 Identities=29% Similarity=0.449 Sum_probs=187.2
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----H
Q ss_conf 099998899879988744311102797189399998489999788999985125699874888994068989688----8
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHW----Y 1066 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~----l 1066 (1230)
.|+++||+++|. +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+... .
T Consensus 3 ~i~v~nl~k~yg---~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred CEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCC
T ss_conf 189986999989---99998560668869989999999998099999999648788989899999980356644424532
Q ss_pred HHCCEEECCCCCCCCC-CHHHHHCCCCC--CCCHH----HHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 6501687025667864-48888623999--99998----99999998230999981202333211599999992599999
Q 000909 1067 RKHTALVSQEPVIYAG-NIRDNIVFGKL--DASEN----EVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRI 1139 (1230)
Q Consensus 1067 R~~i~~V~Qd~~LF~g-TIreNi~~~~~--~~s~~----~i~~al~~a~l~~~i~~Lp~Gldt~ige~G~~LSgGQrQrl 1139 (1230)
|+++++|||+|.||+. ||+||+.++.. ..+.+ .+.+.++..++.++.+ .....||||||||+
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~-----------~~p~~LSGGqkQRv 148 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN-----------RKPRELSGGQRQRV 148 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTT-----------CCGGGSCHHHHHHH
T ss_pred CCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHC-----------CCHHHCCHHHHHHH
T ss_conf 2551200221222310116676330687729998999999999998759966762-----------99334999999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHH
Q ss_conf 99999702998778616667868897999999999860--99859998159146640-3989999496798805976895
Q 000909 1140 AIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLT 1216 (1230)
Q Consensus 1140 aLARAll~~~~ILiLDEaTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL~ 1216 (1230)
+|||||..+|++|+|||||++||+.+...|++.|.++. .|.|+|+|||+++.+.. ||||++|++|+|++.|+|+|++
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 99999826998898258876569899989999999998636988999959999999969999999899999985999998
Q ss_pred HC-CCCC
Q ss_conf 10-6520
Q 000909 1217 HM-RGAF 1222 (1230)
Q Consensus 1217 ~~-~g~y 1222 (1230)
.+ ...|
T Consensus 229 ~~P~~~~ 235 (240)
T d1g2912 229 DKPANTF 235 (240)
T ss_dssp HSCSBHH
T ss_pred HCCCCHH
T ss_conf 2899989
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=373.87 Aligned_cols=211 Identities=29% Similarity=0.442 Sum_probs=177.3
Q ss_pred EEEEEEEEECCCCCC-CCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 999988998799887-443111027971893999984899997889999851256998748889940689896888----
Q 000909 992 IEMRRVDFAYPSRPD-ALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWY---- 1066 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l---- 1066 (1230)
|+++||+++|+.... ..+|+|+||+|++||.+||+||||||||||++++.|+++|++|+|++||.|+...+...+
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HHCCEEECCCCCCCCC-CHHHHHCCCC-----CCCCHHHH----HHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 6501687025667864-4888862399-----99999899----999998230999981202333211599999992599
Q 000909 1067 RKHTALVSQEPVIYAG-NIRDNIVFGK-----LDASENEV----VEAARAANAHEFISSLKDGYETECGERGVQLSGGQR 1136 (1230)
Q Consensus 1067 R~~i~~V~Qd~~LF~g-TIreNi~~~~-----~~~s~~~i----~~al~~a~l~~~i~~Lp~Gldt~ige~G~~LSgGQr 1136 (1230)
|++|++|+|+|.+|+. |++||+.++. +..+.++. .+.++..++ ++. .......+||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~---~~~~~p~~LSGGqk 151 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL-------EER---FANHKPNQLSGGQQ 151 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTC-------CGG---GTTCCGGGSCHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCH-------HHH---HHCCCHHHCCHHHH
T ss_conf 55577880412417686688877578887224789999999999998876242-------345---53488023899999
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHCCEEEEEECCEEEEECCH
Q ss_conf 99999999702998778616667868897999999999860--99859998159146640398999949679880597
Q 000909 1137 QRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKKLDSIALVADGRVVERGTY 1212 (1230)
Q Consensus 1137 QrlaLARAll~~~~ILiLDEaTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt~ 1212 (1230)
||++|||||..+|++|+||||||+||+.+...|++.|.++. .++|+|+|||+++.++.||||++|++|+|++.|++
T Consensus 152 QRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 152 QRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 999987565227888994687654698999999999999998439999998788899986998999989999995257
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=366.01 Aligned_cols=220 Identities=25% Similarity=0.417 Sum_probs=186.9
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC--------
Q ss_conf 099998899879988744311102797189399998489999788999985125699874888994068989--------
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELD-------- 1062 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~-------- 1062 (1230)
.|+++|++++|. +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+...+
T Consensus 2 ~Lev~nl~k~yg---~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCC
T ss_conf 699997899989---99988150668869979999989998299999999747667899779999993367752000023
Q ss_pred -----HHHHHHCCEEECCCCCCCCC-CHHHHHCCC---CCCCCH----HHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf -----68886501687025667864-488886239---999999----89999999823099998120233321159999
Q 000909 1063 -----VHWYRKHTALVSQEPVIYAG-NIRDNIVFG---KLDASE----NEVVEAARAANAHEFISSLKDGYETECGERGV 1129 (1230)
Q Consensus 1063 -----~~~lR~~i~~V~Qd~~LF~g-TIreNi~~~---~~~~s~----~~i~~al~~a~l~~~i~~Lp~Gldt~ige~G~ 1129 (1230)
...+|+++++|+|+|.+|+. |++||+.++ ....+. +.+.++++.+++.+.... .-..
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~p~ 148 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG----------KYPV 148 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT----------SCGG
T ss_pred CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHC----------CCCC
T ss_conf 517679997454489983323141101021365657876299989999999999998299524430----------6822
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHH-CCEEEEEECCEEE
Q ss_conf 999259999999999702998778616667868897999999999860-99859998159146640-3989999496798
Q 000909 1130 QLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGRVV 1207 (1230)
Q Consensus 1130 ~LSgGQrQrlaLARAll~~~~ILiLDEaTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Iv 1207 (1230)
+|||||+||++|||||..+|++|||||||++||+.+...|++.|+++. +|+|+|+|||++..+.. ||||+||.+|+|+
T Consensus 149 ~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv 228 (258)
T d1b0ua_ 149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228 (258)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEE
T ss_conf 05677888989999984399878852455568878888998765541036883389948999999869999999799999
Q ss_pred EECCHHHHHHC-CCCCH
Q ss_conf 80597689510-65208
Q 000909 1208 ERGTYAQLTHM-RGAFF 1223 (1230)
Q Consensus 1208 e~Gt~~eL~~~-~g~y~ 1223 (1230)
+.|+|+|++++ ...|-
T Consensus 229 ~~g~~~ev~~~P~~~~~ 245 (258)
T d1b0ua_ 229 EEGDPEQVFGNPQSPRL 245 (258)
T ss_dssp EEECHHHHHHSCCSHHH
T ss_pred EECCHHHHHHCCCCHHH
T ss_conf 98499999838999999
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.3e-44 Score=354.77 Aligned_cols=220 Identities=22% Similarity=0.368 Sum_probs=183.7
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHH-C
Q ss_conf 099998899879988744311102797189399998489999788999985125699874888994068989688865-0
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRK-H 1069 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~-~ 1069 (1230)
-|+++|++++|. +..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+...+.+..++ .
T Consensus 6 ~Lev~~l~k~yg---~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 6 VLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 799961899989---98888302578889979999999998599999999678888803898424434466088888742
Q ss_pred CEEECCCCCCCCC-CHHHHHCCCCC-CCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 1687025667864-48888623999-999989999999823099998120233321159999999259999999999702
Q 000909 1070 TALVSQEPVIYAG-NIRDNIVFGKL-DASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIR 1147 (1230)
Q Consensus 1070 i~~V~Qd~~LF~g-TIreNi~~~~~-~~s~~~i~~al~~a~l~~~i~~Lp~Gldt~ige~G~~LSgGQrQrlaLARAll~ 1147 (1230)
++++||++.+|+. |++||+.++.. ....++..+.++.+- +... +++.........||||||||++|||||+.
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~--~~~~----~l~~~~~~~~~~LSGG~~Qrv~iAraL~~ 156 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIF--SLFP----RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHH--HHCH----HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH--HHHH----CHHHHHHCCHHHCCHHHHHHHHHHHHHHH
T ss_conf 35567655457763699999988873278889999999999--8741----76888758543389999999999999982
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 998778616667868897999999999860-99859998159146640-3989999496798805976895106
Q 000909 1148 NPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTHMR 1219 (1230)
Q Consensus 1148 ~~~ILiLDEaTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL~~~~ 1219 (1230)
+|++|+|||||++||+.+...+++.|+++. +|+|+|+++|+++.+.. ||||++|++|+|++.|+|+|+++.+
T Consensus 157 ~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 230 (240)
T d1ji0a_ 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTCH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH
T ss_conf 99874003988679999999999999999968998999958899999969999999899999984899984298
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.1e-43 Score=347.71 Aligned_cols=223 Identities=28% Similarity=0.440 Sum_probs=192.1
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHH
Q ss_conf 41899988898899999754013049983897999984899948999999941787998669989962698888887501
Q 000909 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRRE 432 (1230)
Q Consensus 353 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~ 432 (1230)
..|+++|++++|++ ..+|+++||++++||.++|+||||||||||+++|.|++.|++|+|.++|.|+...+.. +++
T Consensus 5 ~~I~v~nlsk~yg~---~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ 79 (239)
T d1v43a3 5 VEVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRN 79 (239)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGT
T ss_pred CEEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCE
T ss_conf 74999879999999---9998130678879989999999998299999999758999878799916413547700--015
Q ss_pred EEEECCCCCCCCH-HHHHHHHCCCC--CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 0788067666603-08999863999--99998999999997399999838886101002899988936999999999860
Q 000909 433 MGLVSQEHALFGT-SIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAII 509 (1230)
Q Consensus 433 i~~v~Q~~~l~~~-ti~~Ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARal~ 509 (1230)
+|||+|+|.+|+. |++||+.++.. ..+.++..+. +.+.++.+ |++.........||||||||++||||+.
T Consensus 80 ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSGGq~QRvaiAraL~ 152 (239)
T d1v43a3 80 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR-----VRWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIV 152 (239)
T ss_dssp EEEEEC------CCCHHHHHHTTCC--CCCHHHHHHH-----HHHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHT
T ss_pred EEEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHC--CCHHHHCCCHHHCCHHHHHHHHHHHHHC
T ss_conf 8998003353422209999999998739999999999-----99999875--9855660995469999988999976640
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHHCCCHH
Q ss_conf 2998899837778999797999999999842--99739998229202330-59899995986978259367873028278
Q 000909 510 KNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRIDGHY 586 (1230)
Q Consensus 510 ~~~~ililDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 586 (1230)
.+|+|++|||||++||+.+...+.+.+.++. .++|+|++||++..+.. ||+|++|++|+|++.|+++++.+++...|
T Consensus 153 ~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~ 232 (239)
T d1v43a3 153 VEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 232 (239)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHH
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHH
T ss_conf 49982430688666898999899999999987319807999489999998699999998999999859999986899989
Q ss_pred H
Q ss_conf 9
Q 000909 587 A 587 (1230)
Q Consensus 587 ~ 587 (1230)
.
T Consensus 233 ~ 233 (239)
T d1v43a3 233 V 233 (239)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.5e-44 Score=354.18 Aligned_cols=218 Identities=21% Similarity=0.364 Sum_probs=181.6
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHC-
Q ss_conf 0999988998799887443111027971893999984899997889999851256998748889940689896888650-
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKH- 1069 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~- 1069 (1230)
-|+++||+.+|++ .++|+||||++++||.+||+||||||||||+++|.|+++|++|+|.++|.|+...++.+.++.
T Consensus 4 iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHC
T ss_conf 6999778999799---6887121799889979999999998499999999779768873799999966405699999833
Q ss_pred CEEECCCCCCCCC-CHHHHHCCCCCC---------------CCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 1687025667864-488886239999---------------999899999998230999981202333211599999992
Q 000909 1070 TALVSQEPVIYAG-NIRDNIVFGKLD---------------ASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSG 1133 (1230)
Q Consensus 1070 i~~V~Qd~~LF~g-TIreNi~~~~~~---------------~s~~~i~~al~~a~l~~~i~~Lp~Gldt~ige~G~~LSg 1133 (1230)
|+++||+|.+|.. |++||+.++... ..+++..+.+ .+.++.+ |++........+|||
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSg 153 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKA-----FKILEFL--KLSHLYDRKAGELSG 153 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHH-----HHHHHHT--TCGGGTTSBGGGSCH
T ss_pred CCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHH-----HHHHHHC--CCCHHCCCCHHHCCC
T ss_conf 872577642478874232143013330345045665421353289999999-----9998761--963020595356991
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECC
Q ss_conf 59999999999702998778616667868897999999999860-99859998159146640-39899994967988059
Q 000909 1134 GQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGT 1211 (1230)
Q Consensus 1134 GQrQrlaLARAll~~~~ILiLDEaTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt 1211 (1230)
|||||++|||||..+|++|||||||++||+.+...+++.|+++. +|+|+|+|+|+++.+.. ||||+||++|+|++.|+
T Consensus 154 G~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~ 233 (254)
T d1g6ha_ 154 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 233 (254)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEEC
T ss_conf 88889999999975927232439765699999999999999999789989999476999998699999996998999966
Q ss_pred HHHHHHC
Q ss_conf 7689510
Q 000909 1212 YAQLTHM 1218 (1230)
Q Consensus 1212 ~~eL~~~ 1218 (1230)
|+|+.+.
T Consensus 234 ~~e~~~~ 240 (254)
T d1g6ha_ 234 GEEEIKN 240 (254)
T ss_dssp SHHHHHH
T ss_pred HHHHHHC
T ss_conf 8998654
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=6.4e-44 Score=349.34 Aligned_cols=218 Identities=29% Similarity=0.425 Sum_probs=186.2
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHC
Q ss_conf 70999988998799887443111027971893999984899997889999851256998748889940689896888650
Q 000909 990 GKIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKH 1069 (1230)
Q Consensus 990 g~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 1069 (1230)
|.|+++|++.+|. +.++|+|+||++++||.+||+||||||||||+++|.|+++|++|+|.++|.|+.+ ....+|+.
T Consensus 1 gaI~v~nl~k~yg---~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CCEEEEEEEEEEC---CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-CHHHHHHH
T ss_conf 9789995899999---9999806256884897999999999999999999966988788879998672446-83988721
Q ss_pred CEEECCCCCCCCC-CHHHHHCCCCC--CCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 1687025667864-48888623999--99998999999982309999812023332115999999925999999999970
Q 000909 1070 TALVSQEPVIYAG-NIRDNIVFGKL--DASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAII 1146 (1230)
Q Consensus 1070 i~~V~Qd~~LF~g-TIreNi~~~~~--~~s~~~i~~al~~a~l~~~i~~Lp~Gldt~ige~G~~LSgGQrQrlaLARAll 1146 (1230)
++||||++.+|.. |++||+.+... ..+..++.+..+.+ ++.+ |++....+....||||||||++||||++
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----l~~~--~l~~~~~~~~~~lSgG~~qrv~iA~al~ 149 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-----TEIA--GLGEKIKDRVSTYSKGMVRKLLIARALM 149 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH-----HHHC--CCHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 86750015468786677888989986179989999999999-----9867--9788885045337998989999999986
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 2998778616667868897999999999860-99859998159146640-398999949679880597689510
Q 000909 1147 RNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTHM 1218 (1230)
Q Consensus 1147 ~~~~ILiLDEaTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL~~~ 1218 (1230)
.+|++|+|||||++||+.+...+++.++++. +|+|+|++||+++.+.. ||||++|++|+|++.|+|+++.++
T Consensus 150 ~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 150 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 59998873379889798999999999999996599899995989999996999999989999999289999865
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=8.3e-44 Score=348.54 Aligned_cols=226 Identities=27% Similarity=0.398 Sum_probs=190.4
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHH
Q ss_conf 189998889889999975401304998389799998489994899999994178799866998996269888---88875
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQ---LKWVR 430 (1230)
Q Consensus 354 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~---~~~~r 430 (1230)
.|+++|++++|+.. +..+|+|+||++++||.++|+||||||||||+++|.|+++|++|+|.++|.++...+ ....|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEEEEEEECCC-CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHH
T ss_conf 89997579998899-98998040789879989999989998099999999758688874599999995137311153120
Q ss_pred HHEEEECCCCCCCCH-HHHHHHHCCCCC--CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 010788067666603-089998639999--99989999999973999998388861010028999889369999999998
Q 000909 431 REMGLVSQEHALFGT-SIKDNIMFGKLD--ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARA 507 (1230)
Q Consensus 431 ~~i~~v~Q~~~l~~~-ti~~Ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARa 507 (1230)
+++|||+|+|.+|+. |++|||.++... ...++..+.+ .+.++.+ |++.........||||||||++||||
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v-----~~~l~~~--gL~~~~~~~p~~LSGGqkQRvaiARa 154 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV-----EEVAKIL--DIHHVLNHFPRELSGAQQQRVALARA 154 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHH-----HHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH-----HHHHHHC--CHHHHHHCCHHHCCHHHHHHHHHHHH
T ss_conf 4514773043346666577776655676137999999999-----9998665--91766648954599999858998757
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHH-CCCEEEEEECCEEEEECCHHHHHHHCCC
Q ss_conf 602998899837778999797999999999842--9973999822920233-0598999959869782593678730282
Q 000909 508 IIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVR-NADLIAVVDNGCLVEIGTHNDLINRIDG 584 (1230)
Q Consensus 508 l~~~~~ililDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 584 (1230)
+..+|+++++||||++||+.+...+.+.++++. .+.|+|++||+++.+. .||+|++|++|+|++.|+++++.+++..
T Consensus 155 L~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P~~ 234 (242)
T d1oxxk2 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVS 234 (242)
T ss_dssp HTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSS
T ss_pred HHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCC
T ss_conf 76046614544786679989988998999999863598799997999999996999999989999998699999868999
Q ss_pred HHH
Q ss_conf 789
Q 000909 585 HYA 587 (1230)
Q Consensus 585 ~~~ 587 (1230)
.|.
T Consensus 235 ~~~ 237 (242)
T d1oxxk2 235 IQV 237 (242)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 799
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.2e-43 Score=345.27 Aligned_cols=215 Identities=31% Similarity=0.492 Sum_probs=185.1
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEE
Q ss_conf 89998889889999975401304998389799998489994899999994178799866998996269888888750107
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
|+++|++++|++ .+|+|+||++++||.++|+||||||||||+++|.|+.+|++|+|.++|.++.+++.. |+++|
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig 75 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEECC----EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCE
T ss_conf 899989999499----788433789879989999989998299999999647688878899956734652165--74056
Q ss_pred EECCCCCCCCH-HHHHHHHCCCC---CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 88067666603-08999863999---999989999999973999998388861010028999889369999999998602
Q 000909 435 LVSQEHALFGT-SIKDNIMFGKL---DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIK 510 (1230)
Q Consensus 435 ~v~Q~~~l~~~-ti~~Ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARal~~ 510 (1230)
||+|++.+|+. |++||+.++.. ....+++.++++.. |+..........||||||||++||||++.
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSGG~~QRvaiAraL~~ 144 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL-----------KIEHLLDRNPLTLSGGEQQRVALARALVT 144 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHT-----------TCTTTTTSCGGGSCHHHHHHHHHHHHTTS
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH-----------CCHHHHHCCHHHCCHHHHCCHHHHHHHHC
T ss_conf 1512111174665778888877640553899999999982-----------56555758955479998401403043443
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHHCCCHH
Q ss_conf 998899837778999797999999999842--99739998229202330-59899995986978259367873028278
Q 000909 511 NPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRIDGHY 586 (1230)
Q Consensus 511 ~~~ililDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 586 (1230)
+|++++|||||++||+.+...+.+.+.++. .+.|+|++||++..+.. ||||++|++|++++.|+++++++++...+
T Consensus 145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~ 223 (229)
T d3d31a2 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (229)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHH
T ss_conf 6771443478767998999999999999986479689997499999999699999997999999869999986899879
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.4e-44 Score=348.10 Aligned_cols=221 Identities=28% Similarity=0.447 Sum_probs=184.9
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEE
Q ss_conf 89998889889999975401304998389799998489994899999994178799866998996269888888750107
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
|+++|++++|++ ..+|+|+||++++||.++|+||||||||||+++|.|++.|++|+|.++|.++.+.+.. ++++|
T Consensus 1 Iev~nv~k~yg~---~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 75 (232)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEE
T ss_pred CEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HCEEE
T ss_conf 999999999899---9998111778869989999989998299999999658788888899999977888644--43222
Q ss_pred EECCCCCCCCH-HHHHHHHCCCCCC--CHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 88067666603-0899986399999--99899999999739999983888610100289998893699999999986029
Q 000909 435 LVSQEHALFGT-SIKDNIMFGKLDA--TMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKN 511 (1230)
Q Consensus 435 ~v~Q~~~l~~~-ti~~Ni~~g~~~~--~~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARal~~~ 511 (1230)
||+|+|.+|.. |++||+.++.... ..++..+. +.+.++.+ |+.........+||||||||++||||++.+
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~-----v~~~l~~~--~l~~~~~~~~~~LSGGqkQRvaiAraL~~~ 148 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR-----VNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVAE 148 (232)
T ss_dssp EECSSCCC---------------------CHHHHH-----HHHHHHHC-----------------------CHHHHHHTC
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHC--CCHHHHHCCHHHCCHHHHHHHHHHHHHHCC
T ss_conf 34334202643337889789998759988999999-----99999757--886566489656999999999999997039
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHH--CCCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHHCCCHHH
Q ss_conf 9889983777899979799999999984--299739998229202330-598999959869782593678730282789
Q 000909 512 PVILLLDEATSALDSESETLVQNALDQA--SLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRIDGHYA 587 (1230)
Q Consensus 512 ~~ililDe~ts~lD~~~~~~i~~~i~~~--~~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 587 (1230)
|++++|||||++||+.+...+.+.+.+. ..++|+|++||++..+.. ||||++|++|+|++.|+++++++++...|.
T Consensus 149 P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~v 227 (232)
T d2awna2 149 PSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFV 227 (232)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCCHHH
T ss_conf 9889975888788988998999999999874298799994899999996999999979999998089999738999799
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.4e-43 Score=346.76 Aligned_cols=224 Identities=26% Similarity=0.441 Sum_probs=186.8
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----H
Q ss_conf 189998889889999975401304998389799998489994899999994178799866998996269888888----7
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKW----V 429 (1230)
Q Consensus 354 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~----~ 429 (1230)
.|+++|++++|++ ..+|+|+||++++||.++|+||||||||||+++|.|++.|++|+|.++|.++...+... .
T Consensus 3 ~i~v~nl~k~yg~---~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred CEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCC
T ss_conf 1899869999899---9998560668869989999999998099999999648788989899999980356644424532
Q ss_pred HHHEEEECCCCCCCCH-HHHHHHHCCCC--CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 5010788067666603-08999863999--99998999999997399999838886101002899988936999999999
Q 000909 430 RREMGLVSQEHALFGT-SIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIAR 506 (1230)
Q Consensus 430 r~~i~~v~Q~~~l~~~-ti~~Ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lAR 506 (1230)
|+++|||+|+|.+|+. |++||+.++.. ....++..+..+ +.++.+ |+.........+||||||||++|||
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~-----~~l~~~--~l~~~~~~~p~~LSGGqkQRv~IAr 152 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVR-----EVAELL--GLTELLNRKPRELSGGQRQRVALGR 152 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHH-----HHHHHH--TCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred CCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHH-----HHHHHC--CCHHHHCCCHHHCCHHHHHHHHHHH
T ss_conf 255120022122231011667633068772999899999999-----999875--9966762993349999999999999
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHHCC
Q ss_conf 8602998899837778999797999999999842--99739998229202330-59899995986978259367873028
Q 000909 507 AIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRID 583 (1230)
Q Consensus 507 al~~~~~ililDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 583 (1230)
|+..+|++++|||||++||+.+...+.+.+.++. .|.|+|++||+++.+.. ||+|++|++|+|++.|++++++.++.
T Consensus 153 aL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~P~ 232 (240)
T d1g2912 153 AIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPA 232 (240)
T ss_dssp HHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 98269988982588765698999899999999986369889999599999999699999998999999859999982899
Q ss_pred CHHH
Q ss_conf 2789
Q 000909 584 GHYA 587 (1230)
Q Consensus 584 ~~~~ 587 (1230)
..|.
T Consensus 233 ~~~~ 236 (240)
T d1g2912 233 NTFV 236 (240)
T ss_dssp BHHH
T ss_pred CHHH
T ss_conf 9898
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.1e-43 Score=347.59 Aligned_cols=214 Identities=29% Similarity=0.434 Sum_probs=177.0
Q ss_pred EEEEEEEEECCCCCC-CCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 899988898899999-754013049983897999984899948999999941787998669989962698888887----
Q 000909 355 IEFEHVKFSYPSRPD-SIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWV---- 429 (1230)
Q Consensus 355 i~~~~v~f~y~~~~~-~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~---- 429 (1230)
|+++|++++|+.... ..+|+|+||++++||.++|+||||||||||+++|.|+++|++|+|.+||.++..++...+
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HHHEEEECCCCCCCCH-HHHHHHHCCC-----CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH-HCCCCCCCCHHHHHHH
Q ss_conf 5010788067666603-0899986399-----9999989999999973999998388861010-0289998893699999
Q 000909 430 RREMGLVSQEHALFGT-SIKDNIMFGK-----LDATMDEVIAAATAANAHNFIRQLPEGYETK-VGERGALLSGGQKQRI 502 (1230)
Q Consensus 430 r~~i~~v~Q~~~l~~~-ti~~Ni~~g~-----~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~-i~~~g~~LSgGqkqri 502 (1230)
|+++|||+|+|.+++. |++||+.++. ...+.++..+.+ .+.++.+ |+... ......+||||||||+
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~L~~~~~~~~p~~LSGGqkQRv 154 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRA-----LECLKMA--ELEERFANHKPNQLSGGQQQRV 154 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHH-----HHHHHHT--TCCGGGTTCCGGGSCHHHHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHH-----HHHHHHH--CHHHHHHCCCHHHCCHHHHHHH
T ss_conf 55577880412417686688877578887224789999999999-----9988762--4234553488023899999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCH
Q ss_conf 99998602998899837778999797999999999842--99739998229202330598999959869782593
Q 000909 503 AIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRNADLIAVVDNGCLVEIGTH 575 (1230)
Q Consensus 503 ~lARal~~~~~ililDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~ 575 (1230)
+||||+..+|++++||||||+||+.+...+.+.+.++. .++|+|+|||+++.+..||||++|++|+|+++|+.
T Consensus 155 aIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 155 AIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 987565227888994687654698999999999999998439999998788899986998999989999995257
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-43 Score=346.80 Aligned_cols=220 Identities=32% Similarity=0.478 Sum_probs=184.9
Q ss_pred EEEEEEEEECCCCCC-CCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 899988898899999-75401304998389799998489994899999994178799866998996269888888---75
Q 000909 355 IEFEHVKFSYPSRPD-SIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKW---VR 430 (1230)
Q Consensus 355 i~~~~v~f~y~~~~~-~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~---~r 430 (1230)
|+++|++++|+.... ..+|+|+||++++||.++|+||||||||||+++|.|+.+|++|+|.++|.++...+.+. +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred HHEEEECCCCCCCCH-HHHHHHHCCCC--CCCH----HHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHH
Q ss_conf 010788067666603-08999863999--9999----8999999997399999838886101002899988936999999
Q 000909 431 REMGLVSQEHALFGT-SIKDNIMFGKL--DATM----DEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIA 503 (1230)
Q Consensus 431 ~~i~~v~Q~~~l~~~-ti~~Ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~ 503 (1230)
+++|||+|++.+|+. |++||+.++.. .... +++.+.++.+ |+..........||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~v-----------gL~~~~~~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV-----------GLGDKHDSYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHH-----------STTTTTSSCBSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-----------CCCHHHHCCHHHCCHHHHHHHH
T ss_conf 16643022522279964999999999984999899999999999976-----------9903554894349999998999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9998602998899837778999797999999999842--99739998229202330-59899995986978259367873
Q 000909 504 IARAIIKNPVILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLIN 580 (1230)
Q Consensus 504 lARal~~~~~ililDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 580 (1230)
||||+..+|+++++||||++||+.+...+.+.+.++. .+.|+|+|||++..+.. ||||++|++|+|++.|+++++++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999999879999972
Q ss_pred HCCCH
Q ss_conf 02827
Q 000909 581 RIDGH 585 (1230)
Q Consensus 581 ~~~~~ 585 (1230)
++...
T Consensus 231 ~P~~~ 235 (240)
T d3dhwc1 231 HPKTP 235 (240)
T ss_dssp SSCCT
T ss_pred CCCCH
T ss_conf 89985
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=5.1e-43 Score=342.50 Aligned_cols=215 Identities=28% Similarity=0.469 Sum_probs=178.1
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCE
Q ss_conf 99998899879988744311102797189399998489999788999985125699874888994068989688865016
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1071 (1230)
++. ++.-+|.+ . .+ |+||++. +|.++|+||||||||||+++|.|+++|++|+|.+||.|+.+++.. |++|+
T Consensus 3 l~v-~~~k~~g~---~-~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig 73 (240)
T d2onka1 3 LKV-RAEKRLGN---F-RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73 (240)
T ss_dssp EEE-EEEEEETT---E-EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred EEE-EEEEEECC---E-EE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCE
T ss_conf 999-99999899---9-99-9999749-979999979998099999999739998962899999998869989--92852
Q ss_pred EECCCCCCCCC-CHHHHHCCCCCCCCHHH----HHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 87025667864-48888623999999989----99999982309999812023332115999999925999999999970
Q 000909 1072 LVSQEPVIYAG-NIRDNIVFGKLDASENE----VVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAII 1146 (1230)
Q Consensus 1072 ~V~Qd~~LF~g-TIreNi~~~~~~~s~~~----i~~al~~a~l~~~i~~Lp~Gldt~ige~G~~LSgGQrQrlaLARAll 1146 (1230)
||||++.+|+. ||+||+.++....+..+ +.++++..++ ..........||||||||++||||++
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl-----------~~~~~~~~~~LSGG~kQRvaiAral~ 142 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGI-----------AHLLDRKPARLSGGERQRVALARALV 142 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTC-----------TTTTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred EECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-----------HHHHHCCHHHCCHHHHHHHHHHHHHH
T ss_conf 2523144352201557666532336778899999999986383-----------75665794448999989999987775
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEECCHHHHHHCCCC-C
Q ss_conf 2998778616667868897999999999860--99859998159146640-398999949679880597689510652-0
Q 000909 1147 RNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIKK-LDSIALVADGRVVERGTYAQLTHMRGA-F 1222 (1230)
Q Consensus 1147 ~~~~ILiLDEaTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~vl~~G~Ive~Gt~~eL~~~~g~-y 1222 (1230)
.+|++|+||||||+||+.+...+++.|+++. .+.|+|+|||+++.+.. ||||++|++|++++.|+|+|+++.+.. .
T Consensus 143 ~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v 222 (240)
T d2onka1 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEV 222 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSH
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCHHH
T ss_conf 16770675286555887999999999999987439769998189999999699999998999999906999832998899
Q ss_pred HHHH
Q ss_conf 8886
Q 000909 1223 FNLA 1226 (1230)
Q Consensus 1223 ~~l~ 1226 (1230)
++++
T Consensus 223 ~~fl 226 (240)
T d2onka1 223 AEFL 226 (240)
T ss_dssp HHHG
T ss_pred HHHH
T ss_conf 9985
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.5e-42 Score=337.12 Aligned_cols=226 Identities=27% Similarity=0.457 Sum_probs=186.2
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCH-------
Q ss_conf 1899988898899999754013049983897999984899948999999941787998669989962698888-------
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQL------- 426 (1230)
Q Consensus 354 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~------- 426 (1230)
.|+++|++++|++ ..+|+|+||++++||.++|+||||||||||+++|.|+++|++|+|.++|.++...+.
T Consensus 2 ~Lev~nl~k~yg~---~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCC
T ss_conf 6999978999899---9988150668869979999989998299999999747667899779999993367752000023
Q ss_pred ------HHHHHHEEEECCCCCCCCH-HHHHHHHCCC---CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH-CCCCCCCC
Q ss_conf ------8875010788067666603-0899986399---99999899999999739999983888610100-28999889
Q 000909 427 ------KWVRREMGLVSQEHALFGT-SIKDNIMFGK---LDATMDEVIAAATAANAHNFIRQLPEGYETKV-GERGALLS 495 (1230)
Q Consensus 427 ------~~~r~~i~~v~Q~~~l~~~-ti~~Ni~~g~---~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~i-~~~g~~LS 495 (1230)
..+|+++|||+|+|.+|+. |+.||+.++. ......+..+.. .+.++.+ |+.... .....+||
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~p~~LS 151 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERA-----LKYLAKV--GIDERAQGKYPVHLS 151 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHH-----HHHHHHT--TCCHHHHTSCGGGSC
T ss_pred CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHH-----HHHHHHC--CCCHHHHCCCCCCCC
T ss_conf 517679997454489983323141101021365657876299989999999-----9999982--995244306822056
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEEC
Q ss_conf 369999999998602998899837778999797999999999842-99739998229202330-5989999598697825
Q 000909 496 GGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIG 573 (1230)
Q Consensus 496 gGqkqri~lARal~~~~~ililDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g 573 (1230)
|||+||++||||+..+|+++++||||++||+.+...+.+.++++. +|+|+|+|||++..+.. ||||++|++|+|++.|
T Consensus 152 GG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g 231 (258)
T d1b0ua_ 152 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 231 (258)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEEEEC
T ss_conf 77888989999984399878852455568878888998765541036883389948999999869999999799999984
Q ss_pred CHHHHHHHCCCHHHHH
Q ss_conf 9367873028278999
Q 000909 574 THNDLINRIDGHYAKM 589 (1230)
Q Consensus 574 ~~~~l~~~~~~~~~~~ 589 (1230)
++++++.++...|.+.
T Consensus 232 ~~~ev~~~P~~~~~~~ 247 (258)
T d1b0ua_ 232 DPEQVFGNPQSPRLQQ 247 (258)
T ss_dssp CHHHHHHSCCSHHHHH
T ss_pred CHHHHHHCCCCHHHHH
T ss_conf 9999983899999999
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.9e-41 Score=330.41 Aligned_cols=218 Identities=23% Similarity=0.361 Sum_probs=183.8
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHH-H
Q ss_conf 189998889889999975401304998389799998489994899999994178799866998996269888888750-1
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRR-E 432 (1230)
Q Consensus 354 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~-~ 432 (1230)
-++++|++++|++ ..+|+|+||++++||.++|+||||||||||+++|.|+++|++|+|.++|.++...++...++ .
T Consensus 4 iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHC
T ss_conf 6999778999799---6887121799889979999999998499999999779768873799999966405699999833
Q ss_pred EEEECCCCCCCCH-HHHHHHHCCCCC---------------CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCH
Q ss_conf 0788067666603-089998639999---------------999899999999739999983888610100289998893
Q 000909 433 MGLVSQEHALFGT-SIKDNIMFGKLD---------------ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSG 496 (1230)
Q Consensus 433 i~~v~Q~~~l~~~-ti~~Ni~~g~~~---------------~~~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSg 496 (1230)
++|+||+|.+|.. |+.||+.++... ...++..+ .+.+.++.+ |+.........+|||
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSg 153 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE-----KAFKILEFL--KLSHLYDRKAGELSG 153 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHH-----HHHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred CCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHH-----HHHHHHHHC--CCCHHCCCCHHHCCC
T ss_conf 8725776424788742321430133303450456654213532899999-----999998761--963020595356991
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCCHHHH-CCCEEEEEECCEEEEECC
Q ss_conf 6999999999860299889983777899979799999999984-29973999822920233-059899995986978259
Q 000909 497 GQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQA-SLGRTTLVVAHKLSTVR-NADLIAVVDNGCLVEIGT 574 (1230)
Q Consensus 497 Gqkqri~lARal~~~~~ililDe~ts~lD~~~~~~i~~~i~~~-~~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~ 574 (1230)
|||||++||||+..+|++++|||||++||+.+...+.+.++++ .+|+|+++++|+++.+. .||||++|++|+|+++|+
T Consensus 154 G~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~ 233 (254)
T d1g6ha_ 154 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 233 (254)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEEC
T ss_conf 88889999999975927232439765699999999999999999789989999476999998699999996998999966
Q ss_pred HHHHHHH
Q ss_conf 3678730
Q 000909 575 HNDLINR 581 (1230)
Q Consensus 575 ~~~l~~~ 581 (1230)
++|+.++
T Consensus 234 ~~e~~~~ 240 (254)
T d1g6ha_ 234 GEEEIKN 240 (254)
T ss_dssp SHHHHHH
T ss_pred HHHHHHC
T ss_conf 8998654
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=4.1e-41 Score=327.85 Aligned_cols=220 Identities=24% Similarity=0.405 Sum_probs=183.3
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH-HH
Q ss_conf 41899988898899999754013049983897999984899948999999941787998669989962698888887-50
Q 000909 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWV-RR 431 (1230)
Q Consensus 353 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~-r~ 431 (1230)
--++++|++++|++ ..+|+|+||++++||.++|+||||||||||+++|.|+++|++|+|.++|.++...+.... |.
T Consensus 5 ~~Lev~~l~k~yg~---~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~ 81 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81 (240)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHT
T ss_pred EEEEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHH
T ss_conf 07999618999899---888830257888997999999999859999999967888880389842443446608888874
Q ss_pred HEEEECCCCCCCCH-HHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 10788067666603-089998639999-9998999999997399999838886101002899988936999999999860
Q 000909 432 EMGLVSQEHALFGT-SIKDNIMFGKLD-ATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAII 509 (1230)
Q Consensus 432 ~i~~v~Q~~~l~~~-ti~~Ni~~g~~~-~~~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARal~ 509 (1230)
.++|+||++.+|+. |++||+.++... ...+...+..+.. ...+ .++.........+||||||||++||||+.
T Consensus 82 gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~l~~~~~~~~~~LSGG~~Qrv~iAraL~ 155 (240)
T d1ji0a_ 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI-----FSLF-PRLKERLKQLGGTLSGGEQQMLAIGRALM 155 (240)
T ss_dssp TEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHH-----HHHC-HHHHTTTTSBSSSSCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHH-HCHHHHHHCCHHHCCHHHHHHHHHHHHHH
T ss_conf 23556765545776369999998887327888999999999-----9874-17688875854338999999999999998
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCCHHHH-CCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 299889983777899979799999999984-29973999822920233-0598999959869782593678730
Q 000909 510 KNPVILLLDEATSALDSESETLVQNALDQA-SLGRTTLVVAHKLSTVR-NADLIAVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 510 ~~~~ililDe~ts~lD~~~~~~i~~~i~~~-~~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 581 (1230)
.+|++++|||||++||+.+...+.+.++++ .+|+|+|++||++..+. .||+|++|++|++++.|+++++.++
T Consensus 156 ~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 29987400398867999999999999999996899899995889999996999999989999998489998429
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.6e-40 Score=323.42 Aligned_cols=218 Identities=27% Similarity=0.422 Sum_probs=186.9
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHH
Q ss_conf 41899988898899999754013049983897999984899948999999941787998669989962698888887501
Q 000909 353 GEIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRRE 432 (1230)
Q Consensus 353 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~ 432 (1230)
|.|+++|++++|+. ..+|+|+||++++||.++|+||||||||||+++|.|++.|++|+|.++|.|+.+. ....|+.
T Consensus 1 gaI~v~nl~k~yg~---~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTT
T ss_pred CCEEEEEEEEEECC---EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC-HHHHHHH
T ss_conf 97899958999999---9998062568848979999999999999999999669887888799986724468-3988721
Q ss_pred EEEECCCCCCCCH-HHHHHHHCCCC--CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 0788067666603-08999863999--99998999999997399999838886101002899988936999999999860
Q 000909 433 MGLVSQEHALFGT-SIKDNIMFGKL--DATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAII 509 (1230)
Q Consensus 433 i~~v~Q~~~l~~~-ti~~Ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARal~ 509 (1230)
++|+||++.+|.. |+.||+.+... .....++.+..+.. ++.+ ++.........+||||||||++||||+.
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----l~~~--~l~~~~~~~~~~lSgG~~qrv~iA~al~ 149 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-----TEIA--GLGEKIKDRVSTYSKGMVRKLLIARALM 149 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH-----HHHC--CCHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 86750015468786677888989986179989999999999-----9867--9788885045337998989999999986
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHH
Q ss_conf 299889983777899979799999999984-299739998229202330-598999959869782593678730
Q 000909 510 KNPVILLLDEATSALDSESETLVQNALDQA-SLGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 510 ~~~~ililDe~ts~lD~~~~~~i~~~i~~~-~~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 581 (1230)
.+|++++|||||++||+.+...+.+.+++. .+|+|+|++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 150 ~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 150 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 59998873379889798999999999999996599899995989999996999999989999999289999865
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=6.1e-40 Score=318.84 Aligned_cols=218 Identities=31% Similarity=0.482 Sum_probs=180.9
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEE
Q ss_conf 89998889889999975401304998389799998489994899999994178799866998996269888888750107
Q 000909 355 IEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 355 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
+++ ++..+|+. ..+ |+||++. +|.++|+||||||||||+++|.|+++|++|+|.++|.++.+++.. |++||
T Consensus 3 l~v-~~~k~~g~----~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig 73 (240)
T d2onka1 3 LKV-RAEKRLGN----FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73 (240)
T ss_dssp EEE-EEEEEETT----EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred EEE-EEEEEECC----EEE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCE
T ss_conf 999-99999899----999-9999749-979999979998099999999739998962899999998869989--92852
Q ss_pred EECCCCCCCCH-HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 88067666603-08999863999999989999999973999998388861010028999889369999999998602998
Q 000909 435 LVSQEHALFGT-SIKDNIMFGKLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPV 513 (1230)
Q Consensus 435 ~v~Q~~~l~~~-ti~~Ni~~g~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARal~~~~~ 513 (1230)
||+|++.+|+. |++||+.|+.......+..+. +.+.++.+ |+..........||||||||++||||++.+|+
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~-----v~~~l~~~--gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~ 146 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHH-----HHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHC--CCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCC
T ss_conf 252314435220155766653233677889999-----99999863--83756657944489999899999877751677
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHHHCCCHHHH
Q ss_conf 899837778999797999999999842--99739998229202330-5989999598697825936787302827899
Q 000909 514 ILLLDEATSALDSESETLVQNALDQAS--LGRTTLVVAHKLSTVRN-ADLIAVVDNGCLVEIGTHNDLINRIDGHYAK 588 (1230)
Q Consensus 514 ililDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 588 (1230)
+++|||||++||+.+...+.+.++++. .+.|+|++||++..+.. ||+|++|++|++++.|+++++++.++...+.
T Consensus 147 illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~~ 224 (240)
T d2onka1 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAE 224 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHHH
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCHHHHH
T ss_conf 067528655588799999999999998743976999818999999969999999899999990699983299889999
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4e-40 Score=320.26 Aligned_cols=209 Identities=24% Similarity=0.381 Sum_probs=180.7
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCE
Q ss_conf 99998899879988744311102797189399998489999788999985125699874888994068989688865016
Q 000909 992 IEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 992 I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1071 (1230)
++++||+.+| +|+||||+|++||.+||+||||||||||+++|.|++ |++|+|.++|.|+..++...++...+
T Consensus 4 l~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEECCCCCC-------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHCE
T ss_conf 9998741571-------555888899489899999899980999999994887-99559999999998699899986402
Q ss_pred EECCCCC-CCCCCHHHHHCCCCCCCC-HHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--
Q ss_conf 8702566-786448888623999999-989999999823099998120233321159999999259999999999702--
Q 000909 1072 LVSQEPV-IYAGNIRDNIVFGKLDAS-ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIR-- 1147 (1230)
Q Consensus 1072 ~V~Qd~~-LF~gTIreNi~~~~~~~s-~~~i~~al~~a~l~~~i~~Lp~Gldt~ige~G~~LSgGQrQrlaLARAll~-- 1147 (1230)
+++|+.. .|..++.+|+.++..+.. .+.+.++++..++.+ .++.....||||||||++||||+++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~~~~LSgG~~Qrv~iA~al~~~~ 144 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-----------KLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTT-----------TTTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHH-----------HHCCCHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 451213577442098876410014668999999998659876-----------767684456998899999999998517
Q ss_pred -----CCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCHHHH-HCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf -----99877861666786889799999999986-09985999815914664-03989999496798805976895106
Q 000909 1148 -----NPTILLLDEATSALDVQSEQVVQEALDRI-MMGRTTIVVAHRLNTIK-KLDSIALVADGRVVERGTYAQLTHMR 1219 (1230)
Q Consensus 1148 -----~~~ILiLDEaTS~LD~~te~~i~~~l~~~-~~~~TvI~IaHrl~ti~-~~D~I~vl~~G~Ive~Gt~~eL~~~~ 1219 (1230)
+|+||||||||++||+.+...+.+.++++ ..|+|+|+++|+++.+. .||||++|++|++++.|+++|++..+
T Consensus 145 p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~~ 223 (231)
T d1l7vc_ 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 223 (231)
T ss_dssp TTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCHH
T ss_pred CCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH
T ss_conf 1338998899971877778989999999999999867999999967799999979999999799899988999981886
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-36 Score=292.32 Aligned_cols=209 Identities=24% Similarity=0.382 Sum_probs=178.3
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHE
Q ss_conf 18999888988999997540130499838979999848999489999999417879986699899626988888875010
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREM 433 (1230)
Q Consensus 354 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i 433 (1230)
-++++||+++| .|+++||+|++||.++|+||||||||||+++|.|+. |++|+|.++|.++...+...++...
T Consensus 3 il~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 3 VMQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred EEEEECCCCCC-------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHC
T ss_conf 99998741571-------555888899489899999899980999999994887-9955999999999869989998640
Q ss_pred EEECCCCC-CCCHHHHHHHHCCCCCCC-HHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCC-
Q ss_conf 78806766-660308999863999999-989999999973999998388861010028999889369999999998602-
Q 000909 434 GLVSQEHA-LFGTSIKDNIMFGKLDAT-MDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIK- 510 (1230)
Q Consensus 434 ~~v~Q~~~-l~~~ti~~Ni~~g~~~~~-~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARal~~- 510 (1230)
+|++|+.. .|..++.+++.++..... .+.+.+.++. + +++..++....+||||||||++||||+++
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---------~--~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGA---------L--ALDDKLGRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHH---------T--TCTTTTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHH---------C--CCHHHHCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 24512135774420988764100146689999999986---------5--987676768445699889999999999851
Q ss_pred ------CCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCCHHH-HCCCEEEEEECCEEEEECCHHHHHHH
Q ss_conf ------99889983777899979799999999984-2997399982292023-30598999959869782593678730
Q 000909 511 ------NPVILLLDEATSALDSESETLVQNALDQA-SLGRTTLVVAHKLSTV-RNADLIAVVDNGCLVEIGTHNDLINR 581 (1230)
Q Consensus 511 ------~~~ililDe~ts~lD~~~~~~i~~~i~~~-~~~~t~i~ith~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~ 581 (1230)
+|++++|||||++||+.+...+.+.++++ ..|+|+|+++|+++.+ ..||+|++|++|++++.|++++++.+
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred CCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 7133899889997187777898999999999999986799999996779999997999999979989998899998188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=5e-37 Score=296.52 Aligned_cols=191 Identities=20% Similarity=0.387 Sum_probs=159.1
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCC
Q ss_conf 09999889987998874431110279718939999848999978899998512569987488899406898968886501
Q 000909 991 KIEMRRVDFAYPSRPDALVLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 991 ~I~f~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1070 (1230)
.|+++|++++|+ .++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||+++.+ +|.++
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI 72 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGE
T ss_pred EEEEEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHH-----HCCCE
T ss_conf 599998999939----928842088985998999999999719999999966205677889999896267-----36708
Q ss_pred EEECCCCCCCCC-CHHHHHCCC----CCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 687025667864-488886239----999999899999998230999981202333211599999992599999999997
Q 000909 1071 ALVSQEPVIYAG-NIRDNIVFG----KLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAI 1145 (1230)
Q Consensus 1071 ~~V~Qd~~LF~g-TIreNi~~~----~~~~s~~~i~~al~~a~l~~~i~~Lp~Gldt~ige~G~~LSgGQrQrlaLARAl 1145 (1230)
+++||++.++.. |+.+|+.+. ....+++++.++++..++.+ ++..+ .+||||||||++||||+
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~----~~LSgG~~qrv~ia~al 140 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--------LKKKL----GELSQGTIRRVQLASTL 140 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--------TTSBG----GGSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC--------CCCCC----CCCCCCHHHHHHHHHHH
T ss_conf 9995013578882899999999975488637999999998748856--------30126----86897188889999988
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEEC
Q ss_conf 0299877861666786889799999999986099859998159146640398999949
Q 000909 1146 IRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIALVAD 1203 (1230)
Q Consensus 1146 l~~~~ILiLDEaTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~ 1203 (1230)
+.+|+++||||||++||++++..+++.|.+..+++++++|+|+.. +..||++.+|.+
T Consensus 141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~-l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE-LSYCDVNENLHK 197 (200)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC-CTTSSEEEEGGG
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECH-HHHCCHHHHEEE
T ss_conf 649989998686201699999999999999986799999999162-544161234010
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.8e-33 Score=269.18 Aligned_cols=191 Identities=19% Similarity=0.351 Sum_probs=152.1
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHE
Q ss_conf 18999888988999997540130499838979999848999489999999417879986699899626988888875010
Q 000909 354 EIEFEHVKFSYPSRPDSIVLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREM 433 (1230)
Q Consensus 354 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i 433 (1230)
.|+++|++|+|+ +++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.++.. .+.++
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI 72 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGE
T ss_pred EEEEEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHH-----HCCCE
T ss_conf 599998999939----928842088985998999999999719999999966205677889999896267-----36708
Q ss_pred EEECCCCCCCCH-HHHHHHHCC----CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 788067666603-089998639----999999899999999739999983888610100289998893699999999986
Q 000909 434 GLVSQEHALFGT-SIKDNIMFG----KLDATMDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAI 508 (1230)
Q Consensus 434 ~~v~Q~~~l~~~-ti~~Ni~~g----~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARal 508 (1230)
+|+||++.++.. |+++|+.+. ......+++.++.+.... + +++ ++-.+||||||||++||||+
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~------~--~~~----~~~~~LSgG~~qrv~ia~al 140 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV------L--DLK----KKLGELSQGTIRRVQLASTL 140 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTC------C--CTT----SBGGGSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC------C--CCC----CCCCCCCCCHHHHHHHHHHH
T ss_conf 99950135788828999999999754886379999999987488------5--630----12686897188889999988
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEEC
Q ss_conf 0299889983777899979799999999984299739998229202330598999959
Q 000909 509 IKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAVVDN 566 (1230)
Q Consensus 509 ~~~~~ililDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~ith~~~~~~~~d~i~~l~~ 566 (1230)
+.+|+++||||||++||+++++.+.+.+.+..+++++++++|+. .+..||.+.+|.+
T Consensus 141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC-HHHHCCHHHHEEE
T ss_conf 64998999868620169999999999999998679999999916-2544161234010
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.98 E-value=1.1e-26 Score=216.95 Aligned_cols=315 Identities=18% Similarity=0.215 Sum_probs=273.6
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 49999880083559899999999999777888999999999821116766544466212464899999999999999999
Q 000909 9 NIGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGLAVMV 88 (1230)
Q Consensus 9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (1230)
.++++++|.++. +..++++.++.++.++..+..+++++.++|..... .+ .+.+....+.++++.++..+
T Consensus 3 ~~krl~~~~~~~-k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~-------~~---~~~l~~~~~~~~~~~~~~~i 71 (319)
T d3b60a2 3 TFRRLWPTIAPF-KAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGK-------TD---RSVLLWMPLVVIGLMILRGI 71 (319)
T ss_dssp HHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTS-------TT---HHHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CC---HHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999-99999999999999999999999999999987446-------87---78999999999999997645
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999998199011101698895689999997299999999556989999999999999
Q 000909 89 VAFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGL 168 (1230)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~g~g~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~ 168 (1230)
+.++..++..+.+.+...++|.++++|++++|.++|++ +. .|++++++++|++.+.+.+...+..++..+..+++.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~-~~--~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~ 148 (319)
T d3b60a2 72 TSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK-QS--TGTLLSRITYDSEQVASSSSGALITVVREGASIIGLF 148 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHH-SC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHCCC-CC--CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 33546654434310001100047777650101111023-33--2211111212121000011111200112334456688
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 99998968899999999999999999999999999999999999999999999701999998151899999999999999
Q 000909 169 AFSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDST 248 (1230)
Q Consensus 169 i~~~~~~~~l~li~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~ 248 (1230)
++++.++|.+++++++.+|+..+......++..+..++.++..++..+...|.++|++++|.|++|+.+.+++++..++.
T Consensus 149 ~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~ 228 (319)
T d3b60a2 149 IMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKM 228 (319)
T ss_dssp HHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHH
T ss_conf 88876520021025668999999887666687787898876445677887776248723531110102456666653135
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999-9999999999999999998238648899999999999999999989999999999999999
Q 000909 249 TKLGIKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTEASIAASR 327 (1230)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r 327 (1230)
.+...+............ .......++++++|++++..+.++.|.++++..+......|+..+...+..++++..+.+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~R 308 (319)
T d3b60a2 229 RLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQT 308 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 67788888777740640100000023799999999998099789999999999999999999999999999999999999
Q ss_pred HHHHHCCCCC
Q ss_conf 9998522988
Q 000909 328 IFDRIDRVPE 337 (1230)
Q Consensus 328 i~~~l~~~~~ 337 (1230)
+++++|.+||
T Consensus 309 i~elld~~~E 318 (319)
T d3b60a2 309 LFAILDSEQE 318 (319)
T ss_dssp HHHHHHSCCS
T ss_pred HHHHHCCCCC
T ss_conf 9999669989
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.97 E-value=1.3e-26 Score=216.59 Aligned_cols=321 Identities=13% Similarity=0.126 Sum_probs=266.2
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998800835598999999999997778889999999998211167665444662124648999999999999999999
Q 000909 10 IGIIFRFADRTDILLMVLGTVGAIGDGMSTNCLLVFASRIMNSLGFGQTQSQQNHHENFLDEVEKCSLYFVYLGLAVMVV 89 (1230)
Q Consensus 10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (1230)
+|++++|.+++ ++.++.+.++.++.+......+++.+.++|......... ...............++.+.++..++
T Consensus 2 lKrl~~~~k~~-k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~ 77 (323)
T d2hyda2 2 IKRYLQFVKPY-KYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALT---TDEKVHHLTIAIGIALFIFVIVRPPI 77 (323)
T ss_dssp HHHHHHHHGGG-HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCC---HHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999-999999999999999999999999999999986267742---15568999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999981990111016988956899999972999999995569899999999999999
Q 000909 90 AFLEGYCWSKTSERQVVKIRYKYLEAVLRQEVGFFDSQDATTTSEVINSISKDTSLIQELLSEKVPIFVMNASVFISGLA 169 (1230)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~g~g~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i 169 (1230)
.++..++..+.+.+...++|.++++|++++|.++|++ +. +|++++++++|++.+.+.+...+..++..+..+++.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~-~~--~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~ 154 (323)
T d2hyda2 78 EFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYAN-NQ--VGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALS 154 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHT-SC--HHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CC--CCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHH
T ss_conf 9999999999998556778888766540233210001-22--21100011113321001113454201114665334654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 99989688999999999999999999999999999999999999999999997019999981518999999999999999
Q 000909 170 FSTYFSWRLSLVAFPTLLLLIIPGMIYGKYLIYLSKKAYKEYGKANAIVEQALSSIKTVYSFSAERRIIDRYEAILDSTT 249 (1230)
Q Consensus 170 ~~~~~~~~l~li~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~ 249 (1230)
+++.++|.++++.++..|+..+....+.++..+..++..+..++..+.+.|.++|+++||+|++|+.+.+++++..++..
T Consensus 155 ~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~ 234 (323)
T d2hyda2 155 IMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFL 234 (323)
T ss_dssp HHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCC
T ss_conf 40000146888999988777777764123332026778989999997878875597023467641110023302231111
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999-99999999999999999982386488999999999999999999899999999999999999
Q 000909 250 KLGIKQGTAKGLAVGST-GLSFAIWAFLAWYGSHLVMFKGETGGKIYAAGISFILSGLSLGSALPELKYFTEASIAASRI 328 (1230)
Q Consensus 250 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri 328 (1230)
+...+............ .+......+.+++|.+++..+.+++|.++++..+......|+..+...+..++++..+.+|+
T Consensus 235 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri 314 (323)
T d2hyda2 235 TRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRV 314 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 01567765200001111101205589999999999984998899999999999999999999999999999999999999
Q ss_pred HHHHCCCCC
Q ss_conf 998522988
Q 000909 329 FDRIDRVPE 337 (1230)
Q Consensus 329 ~~~l~~~~~ 337 (1230)
.+++|++||
T Consensus 315 ~elLd~e~e 323 (323)
T d2hyda2 315 FQLIDEDYD 323 (323)
T ss_dssp HHHHTCCCS
T ss_pred HHHHCCCCC
T ss_conf 999779998
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.97 E-value=2.3e-24 Score=199.31 Aligned_cols=316 Identities=18% Similarity=0.296 Sum_probs=281.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999764213369999999999999877778999999999987204524676659899999999999999999999999
Q 000909 649 SFFRLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQSRIRTYSLIFCSLSLISLAFNLLQHYN 728 (1230)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1230)
.+++++++.+++++.+..+.++..+.++..+..++.++..++....... .+....+.+.++++.++..++.++..+.
T Consensus 3 ~~krl~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~~l~~~~~~~~~~~~~~~i~~~~~~~~ 79 (319)
T d3b60a2 3 TFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD---RSVLLWMPLVVIGLMILRGITSYISSYC 79 (319)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT---HHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999999999999999999999999999999998744687---7899999999999999764533546654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999729932322246773479999962199999999988999999999999999999999899
Q 000909 729 FAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVVAWK 808 (1230)
Q Consensus 729 ~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 808 (1230)
..+.+.+...++|.++++++++.|+.+|+ ++++|++.+|+++|++.+...+.......+.....+++.++.++..+|.
T Consensus 80 ~~~~~~~~~~~l~~~~~~~ll~~~~~~~~--~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 157 (319)
T d3b60a2 80 ISWVSGKVVMTMRRRLFGHMMGMPVAFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ 157 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSTHHH--HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHCCCCCHHHHHHHHHCCCCHHHCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 43431000110004777765010111102--3332211111212121000011111200112334456688888765200
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999689999999999999999998812199998730999999999998899999999999
Q 000909 809 LAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARKKSW 888 (1230)
Q Consensus 809 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 888 (1230)
+++++++..|+.........+...+...+..+..++..+...|.+.|++++|+++.|+.+.+++++..++..+...+...
T Consensus 158 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 237 (319)
T d3b60a2 158 LSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 237 (319)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 21025668999999887666687787898876445677887776248723531110102456666653135677888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999999999999999986297388889999999999999999999999999999999999999871688
Q 000909 889 LAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILDRQS 968 (1230)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~ 968 (1230)
......+.......+..++++++|++++..|.+++|.++++..+......|+..+......+.++..+.+|+.+++|.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~ 317 (319)
T d3b60a2 238 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 317 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 77740640100000023799999999998099789999999999999999999999999999999999999999966998
Q ss_pred C
Q ss_conf 8
Q 000909 969 L 969 (1230)
Q Consensus 969 ~ 969 (1230)
|
T Consensus 318 E 318 (319)
T d3b60a2 318 E 318 (319)
T ss_dssp S
T ss_pred C
T ss_conf 9
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.96 E-value=3.2e-24 Score=198.15 Aligned_cols=317 Identities=15% Similarity=0.172 Sum_probs=274.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99997642133699999999999998777789999999999872045246766----59899999999999999999999
Q 000909 650 FFRLLSLNAPEWKQGLIGSLSAIAVGSVQPTYALTIGGMISAFFAKSHSEMQS----RIRTYSLIFCSLSLISLAFNLLQ 725 (1230)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 725 (1230)
+++++++.+|+++.+....++..+.+......++..+..++............ ........+++..++..++.++.
T Consensus 2 lKrl~~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (323)
T d2hyda2 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (323)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999999999999999999999999999986267742155689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999729932322246773479999962199999999988999999999999999999999
Q 000909 726 HYNFAYMGGRLTKRIRLRMLEKILTFEAAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLLVQTTSAVAIAMIMGLVV 805 (1230)
Q Consensus 726 ~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~f~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 805 (1230)
.+...+.+.+...++|.+++++++++|++||+ ++++|++++|+++|++.+.......+...+.....++..++.++..
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (323)
T d2hyda2 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYA--NNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH--TSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99999999855677888876654023321000--1222110001111332100111345420111466533465440000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999999999689999999999999999998812199998730999999999998899999999
Q 000909 806 AWKLAVVMIAVQPLTILCFYTRKVLLSSVSTNFVKAQNRSTQIAVEAVINHRIVTSFGSAGKVLQIFDEAQEEPRKQARK 885 (1230)
Q Consensus 806 ~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~e~~~~~~~~~~~~~~~~~~~~ 885 (1230)
+|.++++.++..|+.........+...+..++..+..++..+...|.+.|+++||+++.|+.+.+++++..++..+...+
T Consensus 160 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k 239 (323)
T d2hyda2 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (323)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHH
T ss_conf 14688899998877777776412333202677898999999787887559702346764111002330223111101567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999999999999986297388889999999999999999999999999999999999999871
Q 000909 886 KSWLAGIGMGSAQCLTFMSWALDFWYGGTLVQKGQISAGDVFKTFFILVSTGKVIAEAGSMTSDLAKGSTAVASVFKILD 965 (1230)
Q Consensus 886 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~ 965 (1230)
..+..............+..++.+++|++++..|.+++|.++++..+......|+..+.....++.++..+.+|+.+++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd 319 (323)
T d2hyda2 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 76520000111110120558999999999998499889999999999999999999999999999999999999999977
Q ss_pred CCC
Q ss_conf 688
Q 000909 966 RQS 968 (1230)
Q Consensus 966 ~~~ 968 (1230)
.++
T Consensus 320 ~e~ 322 (323)
T d2hyda2 320 EDY 322 (323)
T ss_dssp CCC
T ss_pred CCC
T ss_conf 999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.58 E-value=5.5e-17 Score=142.64 Aligned_cols=159 Identities=9% Similarity=0.054 Sum_probs=111.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHHCCCCCCCCHHHHH
Q ss_conf 99998489999788999985125699874888994068989688865016870256678644888862399999998999
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVV 1101 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNi~~~~~~~s~~~i~ 1101 (1230)
+++|+||+|||||||++.+++.+++..|.+.+++.+....+...........++.+.++..+..++...++.....+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQY-- 79 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHH--
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH--
T ss_conf 899998999389999999981488886469987713288887653112336677788754113455443023037625--
Q ss_pred HHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC--HHHHHHHHHHHHHHCCC
Q ss_conf 9999823099998120233321159999999259999999999702998778616667868--89799999999986099
Q 000909 1102 EAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALD--VQSEQVVQEALDRIMMG 1179 (1230)
Q Consensus 1102 ~al~~a~l~~~i~~Lp~Gldt~ige~G~~LSgGQrQrlaLARAll~~~~ILiLDEaTS~LD--~~te~~i~~~l~~~~~~ 1179 (1230)
..+|+|++|+.++++++.++|+++++|||+...+ .+....+.+.+++ .+
T Consensus 80 ---------------------------~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~--~~ 130 (178)
T d1ye8a1 80 ---------------------------FEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PN 130 (178)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TT
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHCC--CC
T ss_conf ---------------------------6653201378999999740997423027773100457999999987505--79
Q ss_pred CEEEEECCCCHHHHHCCEEEEEECCEEEEECC
Q ss_conf 85999815914664039899994967988059
Q 000909 1180 RTTIVVAHRLNTIKKLDSIALVADGRVVERGT 1211 (1230)
Q Consensus 1180 ~TvI~IaHrl~ti~~~D~I~vl~~G~Ive~Gt 1211 (1230)
+|+|.++|+......+|++..+++|++++.+.
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CEEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 78999974477898636599871999999899
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.43 E-value=4.8e-15 Score=127.73 Aligned_cols=159 Identities=11% Similarity=0.038 Sum_probs=106.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCCCCHHHHHHHHCCCCCCCHHHHH
Q ss_conf 99998489994899999994178799866998996269888888750107880676666030899986399999998999
Q 000909 385 SVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMDEVI 464 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~g~~~~~~~~~~ 464 (1230)
+++|+||+|||||||++.++|.+++..|.+..++.+....+............+.+.++..+...+...+...
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 74 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYG------- 74 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEE-------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_conf 8999989993899999999814888864699877132888876531123366777887541134554430230-------
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC--HHHHHHHHHHHHHHCCC
Q ss_conf 9999973999998388861010028999889369999999998602998899837778999--79799999999984299
Q 000909 465 AAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALD--SESETLVQNALDQASLG 542 (1230)
Q Consensus 465 ~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARal~~~~~ililDe~ts~lD--~~~~~~i~~~i~~~~~~ 542 (1230)
.+.. ...+++|++++.+++++...+|+++++|||....+ .+....+.+.+. ..+
T Consensus 75 ------------------~~~~----~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~--~~~ 130 (178)
T d1ye8a1 75 ------------------VNVQ----YFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH--DPN 130 (178)
T ss_dssp ------------------ECHH----HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT--CTT
T ss_pred ------------------CCCC----HHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHC--CCC
T ss_conf ------------------3762----5665320137899999974099742302777310045799999998750--579
Q ss_pred CEEEEEECCCHHHHCCCEEEEEECCEEEEECC
Q ss_conf 73999822920233059899995986978259
Q 000909 543 RTTLVVAHKLSTVRNADLIAVVDNGCLVEIGT 574 (1230)
Q Consensus 543 ~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~ 574 (1230)
+|+|+++|+......+|++..+++|++++.+.
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CEEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 78999974477898636599871999999899
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.35 E-value=3.4e-11 Score=98.17 Aligned_cols=72 Identities=26% Similarity=0.347 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHCCEEEEE
Q ss_conf 9992599999999997----02998778616667868897999999999860-998599981591466403989999
Q 000909 1130 QLSGGQRQRIAIARAI----IRNPTILLLDEATSALDVQSEQVVQEALDRIM-MGRTTIVVAHRLNTIKKLDSIALV 1201 (1230)
Q Consensus 1130 ~LSgGQrQrlaLARAl----l~~~~ILiLDEaTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~~D~I~vl 1201 (1230)
.+|||||.++++|=.+ +.++|+++||||+++||+.+...+.+.|.+.. .+.-+|+|||++.++..+|+++.+
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 32230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.22 E-value=5.9e-10 Score=88.66 Aligned_cols=73 Identities=23% Similarity=0.297 Sum_probs=60.6
Q ss_pred CCCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHCCCEEEEE
Q ss_conf 98893699999999986----02998899837778999797999999999842-997399982292023305989999
Q 000909 492 ALLSGGQKQRIAIARAI----IKNPVILLLDEATSALDSESETLVQNALDQAS-LGRTTLVVAHKLSTVRNADLIAVV 564 (1230)
Q Consensus 492 ~~LSgGqkqri~lARal----~~~~~ililDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~ith~~~~~~~~d~i~~l 564 (1230)
..+|||||.++++|-.+ +.++++++||||+++||+.....+.+.+.... .+.-+|++||++.....||+++..
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.21 E-value=2.9e-10 Score=91.02 Aligned_cols=75 Identities=24% Similarity=0.341 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEE--EEC
Q ss_conf 9992599999999997----0299877861666786889799999999986099859998159146640398999--949
Q 000909 1130 QLSGGQRQRIAIARAI----IRNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKKLDSIAL--VAD 1203 (1230)
Q Consensus 1130 ~LSgGQrQrlaLARAl----l~~~~ILiLDEaTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~v--l~~ 1203 (1230)
.+|+||++.+.++..+ ..+++++++|||-++|++.....+.+.|++..++.-+|++||++..+..+|+++. +++
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~ 298 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVN 298 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEEC
T ss_conf 02577766777776655654226744554320335797899999999998554887999989889997324289999969
Q ss_pred C
Q ss_conf 6
Q 000909 1204 G 1204 (1230)
Q Consensus 1204 G 1204 (1230)
|
T Consensus 299 g 299 (308)
T d1e69a_ 299 G 299 (308)
T ss_dssp S
T ss_pred C
T ss_conf 9
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.12 E-value=3.2e-09 Score=83.03 Aligned_cols=76 Identities=32% Similarity=0.412 Sum_probs=64.8
Q ss_pred CCCCHHHHHHHHHHHH----HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEE--EE
Q ss_conf 9889369999999998----60299889983777899979799999999984299739998229202330598999--95
Q 000909 492 ALLSGGQKQRIAIARA----IIKNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVRNADLIAV--VD 565 (1230)
Q Consensus 492 ~~LSgGqkqri~lARa----l~~~~~ililDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~ith~~~~~~~~d~i~~--l~ 565 (1230)
..+|+|||+...++.. ...++.++++|||-++|++.....+.+.+....++.-+|++||++..+..+|+++. ++
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~ 297 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMV 297 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEE
T ss_conf 10257776677777665565422674455432033579789999999999855488799998988999732428999996
Q ss_pred CC
Q ss_conf 98
Q 000909 566 NG 567 (1230)
Q Consensus 566 ~G 567 (1230)
+|
T Consensus 298 ~g 299 (308)
T d1e69a_ 298 NG 299 (308)
T ss_dssp SS
T ss_pred CC
T ss_conf 99
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.20 E-value=0.0028 Score=37.48 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=26.0
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4013049983897999984899948999999941
Q 000909 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 372 ~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
.|+...--+.||+.+.|.|++|+||||++.-+..
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 6888746978980899994799979999999997
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.86 E-value=0.00066 Score=42.24 Aligned_cols=37 Identities=30% Similarity=0.464 Sum_probs=21.4
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 7189399998489999788999985125699874888
Q 000909 1017 VKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRV 1053 (1230)
Q Consensus 1017 I~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~i 1053 (1230)
++.|..+.|+|++||||||+++.|++..++..=-|.|
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 9837888999403566257899986530145623311
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.85 E-value=0.0085 Score=33.75 Aligned_cols=29 Identities=38% Similarity=0.467 Sum_probs=23.5
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 401304998389799998489994899999994
Q 000909 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQ 404 (1230)
Q Consensus 372 ~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~ 404 (1230)
++.+ +.||+.+.|.|++|+|||||+.-++
T Consensus 22 li~G----~~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 22 VLPN----MVAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp EETT----EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHCC----CCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 8689----5589589999289998999999999
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.82 E-value=0.013 Score=32.27 Aligned_cols=174 Identities=14% Similarity=0.097 Sum_probs=81.9
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEECCEECCCCCHHHHHHC-CEEECCCCCCCCCCHHH
Q ss_conf 3111027971893999984899997889999851-256998748889940689896888650-16870256678644888
Q 000909 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQR-FYDVEQGSVRVDGMDVRELDVHWYRKH-TALVSQEPVIYAGNIRD 1086 (1230)
Q Consensus 1009 vL~~isl~I~~Ge~vaIvG~SGsGKSTL~~lL~r-l~~~~~G~I~idG~di~~~~~~~lR~~-i~~V~Qd~~LF~gTIre 1086 (1230)
-|+++.--+.||+.+.|.|++|+||||++.-+.. +..-..-.+.+-. -+.+.+....+ ++...+-+.--
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s---~E~~~~~~~~r~~~~~~~~~~~~------ 94 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM---LEESVEETAEDLIGLHNRVRLRQ------ 94 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE---SSSCHHHHHHHHHHHHTTCCGGG------
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEE---ECCCHHHHHHHHHHHHHCCCCHH------
T ss_conf 688874697898089999479997999999999726553366345764---01111357769999864587101------
Q ss_pred HHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--CCCCCEEEEECCCCCCC--
Q ss_conf 86239999999899999998230999981202333211599999992599999999997--02998778616667868--
Q 000909 1087 NIVFGKLDASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAI--IRNPTILLLDEATSALD-- 1162 (1230)
Q Consensus 1087 Ni~~~~~~~s~~~i~~al~~a~l~~~i~~Lp~Gldt~ige~G~~LSgGQrQrlaLARAl--l~~~~ILiLDEaTS~LD-- 1162 (1230)
.+..-...++.....++.+.+...-.-..-+........+ .+...+.. -.+|+++++|-.+ .++
T Consensus 95 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~vvID~l~-~l~~~ 162 (277)
T d1cr2a_ 95 ---------SDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDR--LLAKLAYMRSGLGCDVIILDHIS-IVVSA 162 (277)
T ss_dssp ---------CHHHHHHHHHTSHHHHHHHHHHSSSCEEEECCC-CCCHHH--HHHHHHHHHHTTCCSEEEEEEEE-C----
T ss_pred ---------HCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHH--HHHHHHHHHHCCCCCEEEECCCC-CCCCC
T ss_conf ---------0122222145677888988740352146621433106899--99986543213676259970542-12034
Q ss_pred ----H--HHHHHHHHHHHHHC--CCCEEEEECCCCH----------------HH-------HHCCEEEEEEC
Q ss_conf ----8--97999999999860--9985999815914----------------66-------40398999949
Q 000909 1163 ----V--QSEQVVQEALDRIM--MGRTTIVVAHRLN----------------TI-------KKLDSIALVAD 1203 (1230)
Q Consensus 1163 ----~--~te~~i~~~l~~~~--~~~TvI~IaHrl~----------------ti-------~~~D~I~vl~~ 1203 (1230)
. +....+.+.++.+. .+++|++++|=-. .+ ..+|.++.+..
T Consensus 163 ~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~r~~~~~~~~~~~~~~~~~~~gS~~i~~~ad~vl~l~r 234 (277)
T d1cr2a_ 163 SGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER 234 (277)
T ss_dssp ------CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------------------CHHHHHHCSEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHCCEEEEEEE
T ss_conf 654430677899999999976501655203103563224445543333211212343001503869999984
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.64 E-value=1.8e-05 Score=54.35 Aligned_cols=161 Identities=11% Similarity=-0.044 Sum_probs=72.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHHCCCCC------CC
Q ss_conf 999984899997889999851256998748889940689896888650168702566786448888623999------99
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKL------DA 1095 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNi~~~~~------~~ 1095 (1230)
.|.|+||.|+||||+++.+.+.+....+.+.+.+.+........+......+.|+...+.....++...... ..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYVV 82 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99998899971999999999999977997999984550122211465412343302466543001034441432231100
Q ss_pred CHHHHHHHHHHHCHHHHHHHC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 998999999982309999812-0233321159999999259999999999702998778616667868897999999999
Q 000909 1096 SENEVVEAARAANAHEFISSL-KDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVVQEALD 1174 (1230)
Q Consensus 1096 s~~~i~~al~~a~l~~~i~~L-p~Gldt~ige~G~~LSgGQrQrlaLARAll~~~~ILiLDEaTS~LD~~te~~i~~~l~ 1174 (1230)
..++..... .... +.+..+ ..+.+..+.+.....+......+.+.+.++..++++++...+..-+... .+.+.+.
T Consensus 83 ~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 158 (189)
T d2i3ba1 83 DLTSFEQLA-LPVL-RNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPL--ALVEEIR 158 (189)
T ss_dssp CHHHHHTTT-TTTT-CCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCC--TTHHHHH
T ss_pred CHHHHHHHH-HHHH-HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH--HHHHHHH
T ss_conf 377777788-9999-99988762189706861433330535999999999854686599961555775569--9999986
Q ss_pred HHCCCCEEEEECC
Q ss_conf 8609985999815
Q 000909 1175 RIMMGRTTIVVAH 1187 (1230)
Q Consensus 1175 ~~~~~~TvI~IaH 1187 (1230)
+ ..+.+++.++.
T Consensus 159 ~-~~~~~~~~lt~ 170 (189)
T d2i3ba1 159 N-RKDVKVFNVTK 170 (189)
T ss_dssp T-TCCSEEEECCS
T ss_pred C-CCCCEEEEECH
T ss_conf 7-89974999786
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.45 E-value=0.022 Score=30.50 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=23.8
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8389799998489994899999994178
Q 000909 380 VKAGKSVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 380 i~~g~~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
+++|+.+.|.|++|||||+++.-++...
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~ 50 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENA 50 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 8698499999189999999999999999
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.40 E-value=0.024 Score=30.32 Aligned_cols=147 Identities=12% Similarity=0.049 Sum_probs=69.7
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCC-CCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHHCCCCCCC
Q ss_conf 718939999848999978899998512-5699874888994068989688865016870256678644888862399999
Q 000909 1017 VKPGTSVGLVGKSGCGKSTVIGLIQRF-YDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDA 1095 (1230)
Q Consensus 1017 I~~Ge~vaIvG~SGsGKSTL~~lL~rl-~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNi~~~~~~~ 1095 (1230)
+++|+.+-|.|++|||||+++.-++.- .....-.++++ .+.+...++++.. .++ .
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is----~e~~~~~~~~~~~-----------------~~~---~ 78 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFA----YEESRAQLLRNAY-----------------SWG---M 78 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE----SSSCHHHHHHHHH-----------------TTS---C
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEE----CCCCHHHHHHHHH-----------------HCC---C
T ss_conf 869849999918999999999999999987232441121----2679999999999-----------------829---9
Q ss_pred CHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 998999999982309999812023332115999999925999999999970-2998778616667868897999999999
Q 000909 1096 SENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAII-RNPTILLLDEATSALDVQSEQVVQEALD 1174 (1230)
Q Consensus 1096 s~~~i~~al~~a~l~~~i~~Lp~Gldt~ige~G~~LSgGQrQrlaLARAll-~~~~ILiLDEaTS~LD~~te~~i~~~l~ 1174 (1230)
..++. +. .+.-............ +...=.+.+++- .+|++++.|-.++.....++..+.+.+.
T Consensus 79 ~~~~~------------~~---~~~~~~~~~~~~~~~~-~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~ 142 (242)
T d1tf7a2 79 DFEEM------------ER---QNLLKIVCAYPESAGL-EDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVI 142 (242)
T ss_dssp CHHHH------------HH---TTSEEECCCCGGGSCH-HHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHH
T ss_pred CHHHH------------HH---CCCEEEEEEECCHHHH-HHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCHHHHHHHHH
T ss_conf 86998------------54---5861799730001017-99999999999840885332204314304899999999999
Q ss_pred H---H--CCCCEEEEECCCCH----------HHH-HCCEEEEEEC
Q ss_conf 8---6--09985999815914----------664-0398999949
Q 000909 1175 R---I--MMGRTTIVVAHRLN----------TIK-KLDSIALVAD 1203 (1230)
Q Consensus 1175 ~---~--~~~~TvI~IaHrl~----------ti~-~~D~I~vl~~ 1203 (1230)
. . ..++|+++++|... .+. .+|-|+.++.
T Consensus 143 ~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 143 GVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp HHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred HHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEEE
T ss_conf 999999986983999985675125544577640464216999998
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.40 E-value=0.00081 Score=41.55 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=17.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 97999984899948999999941787
Q 000909 383 GKSVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 383 g~~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
|+.+.|+|||||||||+.+.|...++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.31 E-value=0.026 Score=29.97 Aligned_cols=38 Identities=26% Similarity=0.334 Sum_probs=27.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9838979999848999489999999417879986699899
Q 000909 379 KVKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDG 418 (1230)
Q Consensus 379 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 418 (1230)
.+++...+.+.||+|||||++++.+...+... -+.++.
T Consensus 41 g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~--~~~i~~ 78 (256)
T d1lv7a_ 41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISG 78 (256)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--EEEECS
T ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHCCCC--EEEEEH
T ss_conf 99988867866899888228999999982998--799886
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.29 E-value=0.0013 Score=40.00 Aligned_cols=35 Identities=29% Similarity=0.386 Sum_probs=27.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 8979999848999489999999417879986699899
Q 000909 382 AGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDG 418 (1230)
Q Consensus 382 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 418 (1230)
.|+.+.|+|++||||||+.+.|.+.+... -+.+|+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~--~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGVP--KVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSC--EEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCC--EEEECH
T ss_conf 98599998899998899999999995999--799068
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.29 E-value=0.002 Score=38.59 Aligned_cols=34 Identities=26% Similarity=0.311 Sum_probs=24.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8979999848999489999999417879986699
Q 000909 382 AGKSVALVGASGSGKSTAIALVQRFYDADDGIVR 415 (1230)
Q Consensus 382 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 415 (1230)
+|+.++++|+||.|||||++.|.+......|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.23 E-value=0.029 Score=29.66 Aligned_cols=21 Identities=33% Similarity=0.359 Sum_probs=11.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899948999999941
Q 000909 385 SVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
.+.++|++||||||+++.|..
T Consensus 4 lIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989999999999999999
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.20 E-value=0.025 Score=30.08 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=25.5
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 983897999984899948999999941787
Q 000909 379 KVKAGKSVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 379 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
.+++..-+.+.||+|+|||++++.+.+.+.
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 999887578878998763047788787718
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.19 E-value=0.0022 Score=38.24 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=27.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8939999848999978899998512569987488
Q 000909 1019 PGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVR 1052 (1230)
Q Consensus 1019 ~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~ 1052 (1230)
+|++.+++|+||.|||||++.|.+-.....|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.14 E-value=0.0055 Score=35.17 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=23.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 39999848999978899998512569987488899
Q 000909 1021 TSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDG 1055 (1230)
Q Consensus 1021 e~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG 1055 (1230)
+.+.|+|++||||||+++.|.+-. .|...++.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~ 34 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINR 34 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC---CCCEEECH
T ss_conf 799998999999999999999957---99799603
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.07 E-value=0.0065 Score=34.61 Aligned_cols=37 Identities=35% Similarity=0.635 Sum_probs=29.9
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 8389799998489994899999994178799866998
Q 000909 380 VKAGKSVALVGASGSGKSTAIALVQRFYDADDGIVRI 416 (1230)
Q Consensus 380 i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~ 416 (1230)
+..+..+.|+|++||||||+++.++++.++..--|++
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 9837888999403566257899986530145623311
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.00 E-value=0.0023 Score=38.14 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=18.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 389799998489994899999994178
Q 000909 381 KAGKSVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 381 ~~g~~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
++|-.+.++|.+||||||+.+.|..-+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.98 E-value=0.003 Score=37.21 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 897999984899948999999941787
Q 000909 382 AGKSVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 382 ~g~~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
.|..+.|+|||||||+||.+.|...++
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.92 E-value=0.002 Score=38.60 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=15.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984899948999999941787
Q 000909 385 SVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
.++|+|++|||||||++-|.+.+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899989999999999999
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.89 E-value=0.041 Score=28.51 Aligned_cols=25 Identities=36% Similarity=0.314 Sum_probs=18.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3897999984899948999999941
Q 000909 381 KAGKSVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 381 ~~g~~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
++-+.+.++|++||||||+++-+..
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9998999989999989999999997
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.88 E-value=0.041 Score=28.48 Aligned_cols=42 Identities=26% Similarity=0.245 Sum_probs=28.6
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECC
Q ss_conf 97189399998489999788999985125699874888994068
Q 000909 1016 EVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVR 1059 (1230)
Q Consensus 1016 ~I~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~ 1059 (1230)
.+++...+-+.||+|+|||++++.+.+-+... -+.+++-++.
T Consensus 41 g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~--~~~i~~~~l~ 82 (256)
T d1lv7a_ 41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDFV 82 (256)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSST
T ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHCCCC--EEEEEHHHHH
T ss_conf 99988867866899888228999999982998--7998869942
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.85 E-value=0.042 Score=28.41 Aligned_cols=30 Identities=33% Similarity=0.399 Sum_probs=24.2
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3111027971893999984899997889999851
Q 000909 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1009 vL~~isl~I~~Ge~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
++.++ .||+.+-|.|++|+||||++.-|+-
T Consensus 22 li~G~----~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 22 VLPNM----VAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp EETTE----ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHCCC----CCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 86895----5895899992899989999999999
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.82 E-value=0.0031 Score=37.09 Aligned_cols=49 Identities=35% Similarity=0.418 Sum_probs=32.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE----------EECCEECCCCCHHHHHH
Q ss_conf 93999984899997889999851256998748----------88994068989688865
Q 000909 1020 GTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV----------RVDGMDVRELDVHWYRK 1068 (1230)
Q Consensus 1020 Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I----------~idG~di~~~~~~~lR~ 1068 (1230)
|..+.|+||||||||||++.|..-++.....+ ..||+|-.-++.+.+.+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~r~~e~~G~dy~fvs~~~f~~ 60 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQ 60 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEECCCHHHHH
T ss_conf 74999989999999999999984589971798860467774446885133012202455
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.82 E-value=0.021 Score=30.77 Aligned_cols=114 Identities=16% Similarity=0.250 Sum_probs=65.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEECCCCCHHHHHHHEEEECCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 3897999984899948999999941787998669-989962698888887501078806766660308999863999999
Q 000909 381 KAGKSVALVGASGSGKSTAIALVQRFYDADDGIV-RIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDAT 459 (1230)
Q Consensus 381 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i-~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~g~~~~~ 459 (1230)
.++-.+.+.||+||||||.+..++...+....+| ++. ||.-+ -
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiE---------------------dPiE~----------~----- 199 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE---------------------DPIEF----------D----- 199 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE---------------------SSCCS----------C-----
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEC---------------------CCCCC----------C-----
T ss_conf 41054898767877744779998666257874699962---------------------67434----------5-----
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 98999999997399999838886101002899988936999999999860299889983777899979799999999984
Q 000909 460 MDEVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQA 539 (1230)
Q Consensus 460 ~~~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARal~~~~~ililDe~ts~lD~~~~~~i~~~i~~~ 539 (1230)
+|+-.+..+.+. .|+.---++..++-++|+|++..|.. |+++.... +...
T Consensus 200 -------------------~~~~~q~~v~~~-----~~~~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a---~~aa 249 (401)
T d1p9ra_ 200 -------------------IDGIGQTQVNPR-----VDMTFARGLRAILRQDPDVVMVGEIR---DLETAQIA---VQAS 249 (401)
T ss_dssp -------------------CSSSEEEECBGG-----GTBCHHHHHHHHGGGCCSEEEESCCC---SHHHHHHH---HHHH
T ss_pred -------------------CCCCCEEEECCC-----CCCCHHHHHHHHHHHCCCEEEECCCC---CHHHHHHH---HHHH
T ss_conf -------------------678870265587-----67799999999984138889845768---75999999---9997
Q ss_pred CCCCEEEEEECCCHHHHCCCE
Q ss_conf 299739998229202330598
Q 000909 540 SLGRTTLVVAHKLSTVRNADL 560 (1230)
Q Consensus 540 ~~~~t~i~ith~~~~~~~~d~ 560 (1230)
..|+.|+..-|--+...-.+|
T Consensus 250 ~tGhlV~tTlHa~~a~~~~~R 270 (401)
T d1p9ra_ 250 LTGHLVMSTLHTNTAVGAVTR 270 (401)
T ss_dssp HTTCEEEEEECCSSSHHHHHH
T ss_pred HCCCEEEEEECCCCHHHHHHH
T ss_conf 249858998336766766543
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.65 E-value=0.019 Score=30.98 Aligned_cols=44 Identities=16% Similarity=0.337 Sum_probs=31.9
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
Q ss_conf 998899837778999797999999999842997399982292023
Q 000909 511 NPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTV 555 (1230)
Q Consensus 511 ~~~ililDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~ith~~~~~ 555 (1230)
+..++++||+-. +.......+.+.+.........|+++++.+.+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCH
T ss_conf 724999424333-45431112210022135664300010211100
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.52 E-value=0.0072 Score=34.27 Aligned_cols=23 Identities=35% Similarity=0.385 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998489994899999994178
Q 000909 385 SVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
+++++|++|+|||||++.+.+.-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999997787
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.49 E-value=0.056 Score=27.46 Aligned_cols=47 Identities=17% Similarity=0.161 Sum_probs=31.6
Q ss_pred CCCCEEEEECCCCCCCHHHHHH-HHHHHHHH-CCCCEEEEEECCCHHHH
Q ss_conf 2998899837778999797999-99999984-29973999822920233
Q 000909 510 KNPVILLLDEATSALDSESETL-VQNALDQA-SLGRTTLVVAHKLSTVR 556 (1230)
Q Consensus 510 ~~~~ililDe~ts~lD~~~~~~-i~~~i~~~-~~~~t~i~ith~~~~~~ 556 (1230)
.+..++++||...+=++..... ....++.+ ..+.+++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf 9772785545456862332002588888888623761378652023332
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.48 E-value=0.0036 Score=36.58 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999848999489999999417879
Q 000909 385 SVALVGASGSGKSTAIALVQRFYDA 409 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~~~ 409 (1230)
.+||.|++||||||+++.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.47 E-value=0.0064 Score=34.66 Aligned_cols=35 Identities=29% Similarity=0.400 Sum_probs=27.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 8939999848999978899998512569987488899
Q 000909 1019 PGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDG 1055 (1230)
Q Consensus 1019 ~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG 1055 (1230)
.|+.+.|+|++||||||+++.|.+-+.. --+.+|+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEEECH
T ss_conf 9859999889999889999999999599--9799068
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.40 E-value=0.06 Score=27.23 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 999999999860299889983777899
Q 000909 498 QKQRIAIARAIIKNPVILLLDEATSAL 524 (1230)
Q Consensus 498 qkqri~lARal~~~~~ililDe~ts~l 524 (1230)
++-|-.+.+|-...|-|+++||.-+..
T Consensus 87 ~~l~~~f~~A~~~~p~il~ideid~l~ 113 (265)
T d1r7ra3 87 ANVREIFDKARQAAPCVLFFDELDSIA 113 (265)
T ss_dssp HHHHHHHHHHHHTCSEEEEESSGGGTC
T ss_pred HHHHHHHHHHHHCCCCCEEHHHHHHCC
T ss_conf 999999999986398435687546324
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.39 E-value=0.002 Score=38.61 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=28.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8979999848999489999999417879986699
Q 000909 382 AGKSVALVGASGSGKSTAIALVQRFYDADDGIVR 415 (1230)
Q Consensus 382 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 415 (1230)
+|+.++++|+||.|||||++.|.+......|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCC
T ss_conf 3564999877873487898751517676403555
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.36 E-value=0.0063 Score=34.75 Aligned_cols=28 Identities=21% Similarity=0.501 Sum_probs=23.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3897999984899948999999941787
Q 000909 381 KAGKSVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 381 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
|+|-.++|.|++||||||+.+.|...+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=95.29 E-value=0.064 Score=26.99 Aligned_cols=27 Identities=22% Similarity=0.521 Sum_probs=18.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 389799998489994899999994178
Q 000909 381 KAGKSVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 381 ~~g~~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
.+...+++|||+|+||||.+--|...+
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 999899998999998899999999999
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.29 E-value=0.0041 Score=36.16 Aligned_cols=42 Identities=31% Similarity=0.334 Sum_probs=27.4
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEEC
Q ss_conf 838979999848999489999999417879--986699899626
Q 000909 380 VKAGKSVALVGASGSGKSTAIALVQRFYDA--DDGIVRIDGVDI 421 (1230)
Q Consensus 380 i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~i~~~g~~i 421 (1230)
-.+|..+.+.|.+||||||+.+.|...+.. ..-.+.+||.++
T Consensus 21 ~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 21 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 64 (208)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 89986999989999998999999998877742750899753678
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.28 E-value=0.0054 Score=35.23 Aligned_cols=24 Identities=25% Similarity=0.108 Sum_probs=13.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984899948999999941787
Q 000909 385 SVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
.++|+|.+|||||||+.-|.+.+.
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999980999989999999999998
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.27 E-value=0.0058 Score=35.02 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984899948999999941787
Q 000909 385 SVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
.+||.|++||||||+.+.|...+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989997879999999999964
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.26 E-value=0.065 Score=26.93 Aligned_cols=47 Identities=15% Similarity=0.223 Sum_probs=33.9
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHH
Q ss_conf 2998778616667868897999999999860--9985999815914664
Q 000909 1147 RNPTILLLDEATSALDVQSEQVVQEALDRIM--MGRTTIVVAHRLNTIK 1193 (1230)
Q Consensus 1147 ~~~~ILiLDEaTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~ 1193 (1230)
.+..++|+||...+-|++--..+-.++-+.. .+++++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf 9772785545456862332002588888888623761378652023332
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.17 E-value=0.0078 Score=34.00 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=18.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 97999984899948999999941787
Q 000909 383 GKSVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 383 g~~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
.+.+.|.|++||||||+.+.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.17 E-value=0.0076 Score=34.12 Aligned_cols=53 Identities=21% Similarity=0.237 Sum_probs=37.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE--E----------EECCEECCCCCHHHHHHCCE
Q ss_conf 89399998489999788999985125699874--8----------88994068989688865016
Q 000909 1019 PGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS--V----------RVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 1019 ~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~--I----------~idG~di~~~~~~~lR~~i~ 1071 (1230)
+|..+.|+||||||||||.+.|..-++...-. | ..||+|---++.+.+.+.+.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~ 65 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMIS 65 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEECHHHHHHHHH
T ss_conf 98099999999999999999998639866842788876367886554321233432899998754
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.13 E-value=0.005 Score=35.48 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999984899948999999941787
Q 000909 384 KSVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 384 ~~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
+.++|+|++|||||||++.|...+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.10 E-value=0.0051 Score=35.45 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=33.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCCCCHHHHH
Q ss_conf 99998489994899999994178799866998996269888888750107880676666030899
Q 000909 385 SVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKD 449 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 449 (1230)
.++|.|++||||||+.+.|...+.-..+. .++..+++|.+..+...++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~-----------------~~v~~Is~D~F~~~~~~l~ 129 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEH-----------------RRVELITTDGFLHPNQVLK 129 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTC-----------------CCEEEEEGGGGBCCHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCC-----------------CCEEEEEEEEEECCCHHHH
T ss_conf 99996899998768999999997304689-----------------9659995215689845888
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.07 E-value=0.074 Score=26.53 Aligned_cols=25 Identities=40% Similarity=0.545 Sum_probs=16.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9799998489994899999994178
Q 000909 383 GKSVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 383 g~~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
...++++||+|+||||.+--|...+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8689998999998899999999999
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.99 E-value=0.023 Score=30.38 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984899948999999941787
Q 000909 385 SVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
.++++|.+||||||+++.|.+.+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989999999999999999997
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.99 E-value=0.013 Score=32.41 Aligned_cols=49 Identities=14% Similarity=0.297 Sum_probs=33.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHH
Q ss_conf 999984899997889999851256998748889940689896888650168702566786448888
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDN 1087 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreN 1087 (1230)
.|||.|++||||||+++.|..+..-..+ ..++.+|++|.+..+...++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----------------~~~v~~Is~D~F~~~~~~l~~ 130 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----------------HRRVELITTDGFLHPNQVLKE 130 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----------------CCCEEEEEGGGGBCCHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC-----------------CCCEEEEEEEEEECCCHHHHH
T ss_conf 9999689999876899999999730468-----------------996599952156898458888
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.93 E-value=0.01 Score=33.17 Aligned_cols=29 Identities=34% Similarity=0.595 Sum_probs=23.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 99998489994899999994178799866
Q 000909 385 SVALVGASGSGKSTAIALVQRFYDADDGI 413 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~ 413 (1230)
.++|+|++|+|||||++.|.|.-.-..|.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~~ 86 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEGA 86 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 79998999997899999995888677756
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.92 E-value=0.0098 Score=33.25 Aligned_cols=29 Identities=24% Similarity=0.372 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 97999984899948999999941787998
Q 000909 383 GKSVALVGASGSGKSTAIALVQRFYDADD 411 (1230)
Q Consensus 383 g~~~~ivG~sGsGKSTl~~ll~~~~~~~~ 411 (1230)
.+.++|.|++||||||+++.|...+....
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~ 29 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEG 29 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 98899989999898999999999998769
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.92 E-value=0.0026 Score=37.72 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=29.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8939999848999978899998512569987488
Q 000909 1019 PGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVR 1052 (1230)
Q Consensus 1019 ~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~ 1052 (1230)
+|+++.++|+||.|||||++.|.+-.....|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCC
T ss_conf 3564999877873487898751517676403555
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.92 E-value=8.6e-05 Score=49.03 Aligned_cols=34 Identities=26% Similarity=0.251 Sum_probs=27.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 7999984899948999999941787998669989
Q 000909 384 KSVALVGASGSGKSTAIALVQRFYDADDGIVRID 417 (1230)
Q Consensus 384 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~ 417 (1230)
+.+.|+||+|+|||||++.+.+.+....+.+.+.
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~ 35 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGF 35 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 6999988999719999999999999779979999
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.91 E-value=0.0033 Score=36.93 Aligned_cols=27 Identities=33% Similarity=0.496 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 897999984899948999999941787
Q 000909 382 AGKSVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 382 ~g~~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
+|-.+.++|++||||||+.+.|...+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.91 E-value=0.0092 Score=33.48 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=20.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 389799998489994899999994178
Q 000909 381 KAGKSVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 381 ~~g~~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
..+..+.|+|++||||||+.+.|...+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.90 E-value=0.0084 Score=33.75 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998489994899999994178
Q 000909 385 SVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
.++|+|++|+|||||++.|.|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=94.85 E-value=0.0058 Score=34.99 Aligned_cols=31 Identities=16% Similarity=0.102 Sum_probs=24.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 9999848999978899998512569987488
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFYDVEQGSVR 1052 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~ 1052 (1230)
.++|+|++|||||||++-|.+-+....-++-
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~ 34 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPG 34 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 8999918999899999999999997797687
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.82 E-value=0.011 Score=32.97 Aligned_cols=28 Identities=25% Similarity=0.477 Sum_probs=25.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1893999984899997889999851256
Q 000909 1018 KPGTSVGLVGKSGCGKSTVIGLIQRFYD 1045 (1230)
Q Consensus 1018 ~~Ge~vaIvG~SGsGKSTL~~lL~rl~~ 1045 (1230)
|+|-.+.|.|++||||||+++.|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.82 E-value=0.085 Score=26.04 Aligned_cols=88 Identities=23% Similarity=0.139 Sum_probs=50.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHHCCCCCCCCH
Q ss_conf 18939999848999978899998512569987488899406898968886501687025667864488886239999999
Q 000909 1018 KPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASE 1097 (1230)
Q Consensus 1018 ~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNi~~~~~~~s~ 1097 (1230)
++-+.+-++|+.||||||+++-++.-. |.+.++. +.++ +.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~~----~~~~i~~--------D~~~----------------------------~~ 51 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHVNR--------DTLG----------------------------SW 51 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGGG----TCEEEEH--------HHHC----------------------------SH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC----CCEEECH--------HHHH----------------------------HH
T ss_conf 999899998999998999999999765----9789760--------7777----------------------------88
Q ss_pred HHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHCCCCCEEEEE
Q ss_conf 89999999823099998120233321159999999259999-99999970299877861
Q 000909 1098 NEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQR-IAIARAIIRNPTILLLD 1155 (1230)
Q Consensus 1098 ~~i~~al~~a~l~~~i~~Lp~Gldt~ige~G~~LSgGQrQr-laLARAll~~~~ILiLD 1155 (1230)
+.+.+.++ ..|..|.+..+. ..+++..+|++ +.+|+..=-+..++.+|
T Consensus 52 ~~~~~~~~--------~~l~~g~~vIiD--~t~~~~~~R~~~~~~a~~~~~~~~~v~l~ 100 (172)
T d1yj5a2 52 QRCVSSCQ--------AALRQGKRVVID--NTNPDVPSRARYIQCAKDAGVPCRCFNFC 100 (172)
T ss_dssp HHHHHHHH--------HHHHTTCCEEEE--SCCCSHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred HHHHHHHH--------HHHHCCCCCEEE--CCCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 89999999--------999779995551--76799999999999998558887999948
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.81 E-value=0.086 Score=26.02 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=29.6
Q ss_pred CCCEEEEECCCCCCCHHHHH-HHHHHHHHH--CCCCEEEEEECCCHHHH
Q ss_conf 99889983777899979799-999999984--29973999822920233
Q 000909 511 NPVILLLDEATSALDSESET-LVQNALDQA--SLGRTTLVVAHKLSTVR 556 (1230)
Q Consensus 511 ~~~ililDe~ts~lD~~~~~-~i~~~i~~~--~~~~t~i~ith~~~~~~ 556 (1230)
+..++++||...+=++.... +....+..+ ..+..+++.||......
T Consensus 120 ~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~ 168 (234)
T d1wb9a2 120 EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ 168 (234)
T ss_dssp TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH
T ss_conf 6608853222358774566678987645432045442898524687764
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.76 E-value=0.0097 Score=33.30 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=25.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1893999984899997889999851256
Q 000909 1018 KPGTSVGLVGKSGCGKSTVIGLIQRFYD 1045 (1230)
Q Consensus 1018 ~~Ge~vaIvG~SGsGKSTL~~lL~rl~~ 1045 (1230)
++|..|.|+|++||||||+++.|.+-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.75 E-value=0.0065 Score=34.64 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=14.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998489994899999994178
Q 000909 386 VALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 386 ~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
+.|+|||||||+||++.|...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9998999999899999999748
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=94.74 E-value=0.089 Score=25.90 Aligned_cols=94 Identities=19% Similarity=0.308 Sum_probs=46.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCCCCHHHHHHHHCCCCCCCHH
Q ss_conf 89799998489994899999994178799866998996269888888750107880676666030899986399999998
Q 000909 382 AGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEHALFGTSIKDNIMFGKLDATMD 461 (1230)
Q Consensus 382 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~Ni~~g~~~~~~~ 461 (1230)
....+++|||+|+||||.+--|...+. ..| .+++++.=|.+-..+ .+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g------------------~kV~lit~Dt~R~ga--------------~e 57 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK-KKG------------------FKVGLVGADVYRPAA--------------LE 57 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH-HTT------------------CCEEEEECCCSSHHH--------------HH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-HCC------------------CCEEEEEEECCCCCH--------------HH
T ss_conf 998999989999998999999999999-779------------------936999720235515--------------67
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 999999997399999838886101002899988936999999999860299889983777
Q 000909 462 EVIAAATAANAHNFIRQLPEGYETKVGERGALLSGGQKQRIAIARAIIKNPVILLLDEAT 521 (1230)
Q Consensus 462 ~~~~~~~~~~~~~~i~~lp~g~~t~i~~~g~~LSgGqkqri~lARal~~~~~ililDe~t 521 (1230)
++ ..+.+.+ |...........+. .-.+=++..+...+.++++.|=|=
T Consensus 58 QL---------~~~a~~l--~v~~~~~~~~~~~~--~~~~~a~~~~~~~~~d~IlIDTaG 104 (211)
T d1j8yf2 58 QL---------QQLGQQI--GVPVYGEPGEKDVV--GIAKRGVEKFLSEKMEIIIVDTAG 104 (211)
T ss_dssp HH---------HHHHHHH--TCCEECCTTCCCHH--HHHHHHHHHHHHTTCSEEEEECCC
T ss_pred HH---------HHHCCCC--CCCEEECCCCHHHH--HHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 89---------8740146--84223024410244--789999987402677369985377
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.72 E-value=0.09 Score=25.86 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=31.1
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHH-HHHHC--CCCEEEEECCCCHHH
Q ss_conf 29987786166678688979999999-99860--998599981591466
Q 000909 1147 RNPTILLLDEATSALDVQSEQVVQEA-LDRIM--MGRTTIVVAHRLNTI 1192 (1230)
Q Consensus 1147 ~~~~ILiLDEaTS~LD~~te~~i~~~-l~~~~--~~~TvI~IaHrl~ti 1192 (1230)
.+..++|+||.-++-+++--..+-.+ ++.+. .++.+++.||.....
T Consensus 119 ~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 119 TEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf 4660885322235877456667898764543204544289852468776
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.58 E-value=0.012 Score=32.62 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998489994899999994178
Q 000909 385 SVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
.++++|++|+|||||++.|+|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=94.57 E-value=0.012 Score=32.57 Aligned_cols=32 Identities=31% Similarity=0.421 Sum_probs=23.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 79999848999489999999417879986699899
Q 000909 384 KSVALVGASGSGKSTAIALVQRFYDADDGIVRIDG 418 (1230)
Q Consensus 384 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 418 (1230)
..+.|+|++||||||+++.|.+.+. +...++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf 0899989999998999999999809---9889830
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.52 E-value=0.014 Score=32.13 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=14.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 799998489994899999994178
Q 000909 384 KSVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 384 ~~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
+.+.|+||||+||+||.+.|...+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 719999989999999999999709
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.51 E-value=0.0097 Score=33.30 Aligned_cols=25 Identities=20% Similarity=0.546 Sum_probs=22.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999984899997889999851256
Q 000909 1021 TSVGLVGKSGCGKSTVIGLIQRFYD 1045 (1230)
Q Consensus 1021 e~vaIvG~SGsGKSTL~~lL~rl~~ 1045 (1230)
.+|+|+|++|||||||++.|..-+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.44 E-value=0.013 Score=32.26 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=22.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99998489999788999985125699
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFYDVE 1047 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~~~~ 1047 (1230)
.|||.|++||||||+++.|...+...
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~~ 49 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLREQ 49 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 99978988789999999999983634
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=94.44 E-value=0.0091 Score=33.52 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998489994899999994178
Q 000909 385 SVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
++.|+|++||||||+.+.|...+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.43 E-value=0.028 Score=29.74 Aligned_cols=42 Identities=29% Similarity=0.349 Sum_probs=28.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEECCEECCCC
Q ss_conf 9399998489999788999985125------------69987488899406898
Q 000909 1020 GTSVGLVGKSGCGKSTVIGLIQRFY------------DVEQGSVRVDGMDVREL 1061 (1230)
Q Consensus 1020 Ge~vaIvG~SGsGKSTL~~lL~rl~------------~~~~G~I~idG~di~~~ 1061 (1230)
+=+|||+|++|+|||||++.|++-. .+..|.+.++|.++..+
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 61 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFV 61 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCEEEECCCCCEEEEE
T ss_conf 888999999999999999999778762242256543332001220499234652
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=94.42 E-value=0.015 Score=31.74 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=23.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 93999984899997889999851256
Q 000909 1020 GTSVGLVGKSGCGKSTVIGLIQRFYD 1045 (1230)
Q Consensus 1020 Ge~vaIvG~SGsGKSTL~~lL~rl~~ 1045 (1230)
...|.|.|++||||||+++.|.+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.39 E-value=0.013 Score=32.20 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=23.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 389799998489994899999994178
Q 000909 381 KAGKSVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 381 ~~g~~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
|+|-.+.|+||.||||||..+.|...|
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.38 E-value=0.013 Score=32.36 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999984899948999999941787
Q 000909 384 KSVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 384 ~~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
+.+.++|++||||||+.+.|...+.
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 7499989999999999999999969
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.26 E-value=0.012 Score=32.60 Aligned_cols=22 Identities=41% Similarity=0.478 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998489994899999994178
Q 000909 386 VALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 386 ~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
++|+|||||||+|+.+.|...+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.25 E-value=0.11 Score=25.12 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999984899948999999941787
Q 000909 384 KSVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 384 ~~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
.-+.+.||+|+|||++++.+.+.+.
T Consensus 43 ~giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 6488766898883599999998739
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.24 E-value=0.015 Score=31.92 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=24.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1893999984899997889999851256
Q 000909 1018 KPGTSVGLVGKSGCGKSTVIGLIQRFYD 1045 (1230)
Q Consensus 1018 ~~Ge~vaIvG~SGsGKSTL~~lL~rl~~ 1045 (1230)
+.+..+.|+|++||||||+++.|.+-+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9871899989999898999999999869
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.16 E-value=0.021 Score=30.77 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=25.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1893999984899997889999851256
Q 000909 1018 KPGTSVGLVGKSGCGKSTVIGLIQRFYD 1045 (1230)
Q Consensus 1018 ~~Ge~vaIvG~SGsGKSTL~~lL~rl~~ 1045 (1230)
|+|-++.|+||.||||||+++.|..-|.
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~g 28 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNFC 28 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9963899989999988999999999869
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.07 E-value=0.016 Score=31.70 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=20.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89799998489994899999994178
Q 000909 382 AGKSVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 382 ~g~~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
+...++|+||+||||||+++.|...|
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99489998999998899999999997
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=94.07 E-value=0.016 Score=31.63 Aligned_cols=32 Identities=28% Similarity=0.380 Sum_probs=25.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 39999848999978899998512569987488899
Q 000909 1021 TSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDG 1055 (1230)
Q Consensus 1021 e~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG 1055 (1230)
..+.|+|++||||||+++.|.+-++ +...++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf 0899989999998999999999809---9889830
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.05 E-value=0.041 Score=28.48 Aligned_cols=43 Identities=14% Similarity=0.307 Sum_probs=24.8
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHH
Q ss_conf 99877861666786889799999999986099859998159146
Q 000909 1148 NPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNT 1191 (1230)
Q Consensus 1148 ~~~ILiLDEaTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~t 1191 (1230)
+.+++++||+-. |..+....+.+.+.+....+.+|+++++.+.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~ 173 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 173 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCC
T ss_conf 724999424333-4543111221002213566430001021110
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.04 E-value=0.017 Score=31.35 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999848999489999999417
Q 000909 385 SVALVGASGSGKSTAIALVQRF 406 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~ 406 (1230)
.++++|++|+|||||++.|.|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.04 E-value=0.051 Score=27.73 Aligned_cols=43 Identities=16% Similarity=0.290 Sum_probs=29.6
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
Q ss_conf 98899837778999797999999999842997399982292023
Q 000909 512 PVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTV 555 (1230)
Q Consensus 512 ~~ililDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~ith~~~~~ 555 (1230)
..++++||.- .+.......+.+.+.........+++++....+
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 142 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKL 142 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred EEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHH
T ss_conf 1899996632-000237899998863112002320126708775
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.91 E-value=0.02 Score=30.84 Aligned_cols=25 Identities=24% Similarity=0.415 Sum_probs=19.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9799998489994899999994178
Q 000909 383 GKSVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 383 g~~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
-..+.|+||+||||||+++.|...|
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7289998999999899999999985
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.90 E-value=0.018 Score=31.21 Aligned_cols=45 Identities=27% Similarity=0.475 Sum_probs=30.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCC
Q ss_conf 99998489999788999985125699874888994068989688865016870256678
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIY 1080 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF 1080 (1230)
.|||.|++||||||+++.|...+.-.. ++ .-...+.++++|.+..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~----~~----------~~~~~~~vi~~D~yy~ 48 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNE----VD----------YRQKQVVILSQDSFYR 48 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGG----SC----------GGGCSEEEEEGGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHC----CC----------CCCCCEEEEECCCCCC
T ss_conf 999989997879999999999964101----34----------5788439993465322
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.90 E-value=0.017 Score=31.45 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=26.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 939999848999978899998512569987488
Q 000909 1020 GTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVR 1052 (1230)
Q Consensus 1020 Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~ 1052 (1230)
...|+|.|++||||||+++.|...+......+.
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~ 33 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYK 33 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 988999899998989999999999987699869
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.83 E-value=0.014 Score=32.08 Aligned_cols=22 Identities=41% Similarity=0.546 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999848999489999999417
Q 000909 385 SVALVGASGSGKSTAIALVQRF 406 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~ 406 (1230)
-+||+|++++|||||++.|.|.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.82 E-value=0.022 Score=30.50 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998489994899999994178
Q 000909 385 SVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
.++++|++|+|||||++.|.|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.79 E-value=0.023 Score=30.45 Aligned_cols=49 Identities=10% Similarity=0.125 Sum_probs=30.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC-CCEE----------EECCEECCCCCHHHHHHC
Q ss_conf 399998489999788999985125699-8748----------889940689896888650
Q 000909 1021 TSVGLVGKSGCGKSTVIGLIQRFYDVE-QGSV----------RVDGMDVRELDVHWYRKH 1069 (1230)
Q Consensus 1021 e~vaIvG~SGsGKSTL~~lL~rl~~~~-~G~I----------~idG~di~~~~~~~lR~~ 1069 (1230)
..+.|+||||+||+||.+.|++-++-. .-.| ..||+|--=++.+.+.+.
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~E~~G~dY~Fvs~~~F~~~ 63 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD 63 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCEEEEHHHHHHH
T ss_conf 719999989999999999999709767652300166899986455765405314654551
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.78 E-value=0.016 Score=31.60 Aligned_cols=37 Identities=24% Similarity=0.244 Sum_probs=26.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCC---CEEEECCEE
Q ss_conf 3999984899997889999851256998---748889940
Q 000909 1021 TSVGLVGKSGCGKSTVIGLIQRFYDVEQ---GSVRVDGMD 1057 (1230)
Q Consensus 1021 e~vaIvG~SGsGKSTL~~lL~rl~~~~~---G~I~idG~d 1057 (1230)
..++|+|++|||||||+.-|.+.+.... |.|.-|+.+
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~~ 41 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG 41 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 0999980999989999999999998679837999831676
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=93.69 E-value=0.024 Score=30.22 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=17.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 979999848999489999999417
Q 000909 383 GKSVALVGASGSGKSTAIALVQRF 406 (1230)
Q Consensus 383 g~~~~ivG~sGsGKSTl~~ll~~~ 406 (1230)
|=+++++|++++|||||++.|.|.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999899999999688
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.68 E-value=0.012 Score=32.69 Aligned_cols=28 Identities=36% Similarity=0.497 Sum_probs=24.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8939999848999978899998512569
Q 000909 1019 PGTSVGLVGKSGCGKSTVIGLIQRFYDV 1046 (1230)
Q Consensus 1019 ~Ge~vaIvG~SGsGKSTL~~lL~rl~~~ 1046 (1230)
+|-.|.++|++||||||+++.|.+.+..
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~ 45 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLVC 45 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9969998899999999999999999974
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.62 E-value=0.026 Score=30.06 Aligned_cols=23 Identities=35% Similarity=0.367 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998489994899999994178
Q 000909 385 SVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
+++++|++|+|||||++.+.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=93.61 E-value=0.024 Score=30.33 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999848999978899998512
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRF 1043 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl 1043 (1230)
+|+|+|++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.60 E-value=0.018 Score=31.18 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 897999984899948999999941787
Q 000909 382 AGKSVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 382 ~g~~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
+++.++|-|+.||||||++++|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.57 E-value=0.068 Score=26.82 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899948999999941
Q 000909 385 SVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
+++++|.+|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899798999999970
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.56 E-value=0.037 Score=28.79 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=25.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 189399998489999788999985125699874
Q 000909 1018 KPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS 1050 (1230)
Q Consensus 1018 ~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~ 1050 (1230)
.++-.+-+.||+||||||.+..+++..+....+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~ 188 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERN 188 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf 410548987678777447799986662578746
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.55 E-value=0.035 Score=29.04 Aligned_cols=24 Identities=38% Similarity=0.632 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984899948999999941787
Q 000909 385 SVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
.++++|+.|||||||++.|.+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=93.54 E-value=0.027 Score=29.93 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999848999489999999417879
Q 000909 385 SVALVGASGSGKSTAIALVQRFYDA 409 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~~~ 409 (1230)
.++|-||+||||||.++.|...|..
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg~ 29 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFGF 29 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997899987989999999999699
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.51 E-value=0.027 Score=29.90 Aligned_cols=32 Identities=31% Similarity=0.383 Sum_probs=25.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 893999984899997889999851256998748889
Q 000909 1019 PGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVD 1054 (1230)
Q Consensus 1019 ~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~id 1054 (1230)
+...|.|+||.||||||+++.|..-| |-+.++
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~ 36 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF----GWVHLS 36 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCCEEC
T ss_conf 99489998999998899999999997----992672
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=93.51 E-value=0.021 Score=30.69 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984899997889999851256
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFYD 1045 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~~ 1045 (1230)
++.|+|++||||||+++.|..-+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 798989999998999999999979
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.44 E-value=0.026 Score=30.06 Aligned_cols=21 Identities=43% Similarity=0.654 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899948999999941
Q 000909 385 SVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
.+||+|++||||||+++.+..
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.38 E-value=0.028 Score=29.79 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999848999489999999417
Q 000909 385 SVALVGASGSGKSTAIALVQRF 406 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~ 406 (1230)
.++|+|++|+|||||++.|.+.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=93.37 E-value=0.021 Score=30.66 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=21.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999984899997889999851256
Q 000909 1021 TSVGLVGKSGCGKSTVIGLIQRFYD 1045 (1230)
Q Consensus 1021 e~vaIvG~SGsGKSTL~~lL~rl~~ 1045 (1230)
..|.|+|++||||||++++|..-+.
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 7499989999999999999999969
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.30 E-value=0.025 Score=30.18 Aligned_cols=47 Identities=28% Similarity=0.410 Sum_probs=31.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC-------------CCCEEEECCEECCCCCHHHHHHCC
Q ss_conf 9999848999978899998512569-------------987488899406898968886501
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFYDV-------------EQGSVRVDGMDVRELDVHWYRKHT 1070 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~~~-------------~~G~I~idG~di~~~~~~~lR~~i 1070 (1230)
-|.|+|||||||+||++.|..-++. ..|+ .||+|-.-++.+.+.+.+
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E--~~g~dy~fvs~~~f~~~~ 62 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKSMI 62 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTC--CBTTTEEECCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC--CCCCCCEECCHHHHHHHH
T ss_conf 699989999998999999997488662477764268999997--578432432488999987
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.29 E-value=0.03 Score=29.47 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999848999489999999417
Q 000909 385 SVALVGASGSGKSTAIALVQRF 406 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~ 406 (1230)
.++++|.+++|||||++.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.28 E-value=0.042 Score=28.43 Aligned_cols=42 Identities=12% Similarity=0.149 Sum_probs=21.7
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
Q ss_conf 2998899837778999797999999999842997399982292023
Q 000909 510 KNPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTV 555 (1230)
Q Consensus 510 ~~~~ililDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~ith~~~~~ 555 (1230)
.+.+++++|-.. ... +.+..+.+.+... ++-+++|-......
T Consensus 134 ~~~d~~l~~~~~-~~~-~~d~~l~~~l~~~--~k~~~~V~nK~D~~ 175 (400)
T d1tq4a_ 134 YEYDFFIIISAT-RFK-KNDIDIAKAISMM--KKEFYFVRTKVDSD 175 (400)
T ss_dssp GGCSEEEEEESS-CCC-HHHHHHHHHHHHT--TCEEEEEECCHHHH
T ss_pred HCCEEEEEECCC-CCC-HHHHHHHHHHHHC--CCCEEEEEECCCCC
T ss_conf 226599996588-887-8899999999976--99879997086321
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.27 E-value=0.017 Score=31.45 Aligned_cols=21 Identities=43% Similarity=0.602 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999848999489999999417
Q 000909 386 VALVGASGSGKSTAIALVQRF 406 (1230)
Q Consensus 386 ~~ivG~sGsGKSTl~~ll~~~ 406 (1230)
+||+|++++|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.26 E-value=0.062 Score=27.12 Aligned_cols=27 Identities=44% Similarity=0.821 Sum_probs=20.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 897999984899948999999941787
Q 000909 382 AGKSVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 382 ~g~~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
++..+++|||+|+||||.+--|...+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 977999989999988999999999999
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.11 E-value=0.036 Score=28.92 Aligned_cols=21 Identities=43% Similarity=0.571 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899948999999941
Q 000909 385 SVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
.+||+|..||||||+++.+..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.08 E-value=0.033 Score=29.16 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998489999788999985125
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFY 1044 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~ 1044 (1230)
+++++|++|+||||+++.|+|--
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.06 E-value=0.047 Score=28.02 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=24.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 98389799998489994899999994178
Q 000909 379 KVKAGKSVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 379 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
-+++|+.+.|.|++|||||||+.-++...
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98599799999589999999999999999
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.06 E-value=0.027 Score=29.93 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89799998489994899999994178
Q 000909 382 AGKSVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 382 ~g~~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
+.-++++||++|+|||||++.+.+-.
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 77789999999989899999996788
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=93.03 E-value=0.016 Score=31.63 Aligned_cols=53 Identities=25% Similarity=0.260 Sum_probs=35.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECCCCCHHHHHHHEEEECC
Q ss_conf 999984899948999999941787--998669989962698888887501078806
Q 000909 385 SVALVGASGSGKSTAIALVQRFYD--ADDGIVRIDGVDIRRLQLKWVRREMGLVSQ 438 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~~--~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q 438 (1230)
.++|+|+.|+|||||+..|+..-. ...|++. +|....++......++++.-..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~ 58 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTG 58 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEEEEE
T ss_conf 999994889809999999999709755306622-2211356269888738768751
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.03 E-value=0.03 Score=29.57 Aligned_cols=116 Identities=18% Similarity=0.200 Sum_probs=59.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHHCCCCCCCCHHH
Q ss_conf 93999984899997889999851256998748889940689896888650168702566786448888623999999989
Q 000909 1020 GTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENE 1099 (1230)
Q Consensus 1020 Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNi~~~~~~~s~~~ 1099 (1230)
-..+.|+||.||||||+++.|..-| |-+.|+.- +-+|+.+ .+...-....+++-..-+. ...+..
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~----g~~~is~g-------dl~R~~~---~~~~~~~~~~i~~~~~~~~-~~~~~~ 72 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLSAG-------DLLRAEQ---GRAGSQYGELIKNCIKEGQ-IVPQEI 72 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS----SCEEEEHH-------HHHHHHH---HSTTCSCHHHHHHHHHTTC-CCCHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH----CCEEEEHH-------HHHHHHH---HHCCCHHHHHHHHHHHCCC-CCCCHH
T ss_conf 7289998999999899999999985----99088535-------8999886---2010178899887640000-232036
Q ss_pred HHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 9999998230999981202333211599999992599999999997029987786166
Q 000909 1100 VVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEA 1157 (1230)
Q Consensus 1100 i~~al~~a~l~~~i~~Lp~Gldt~ige~G~~LSgGQrQrlaLARAll~~~~ILiLDEa 1157 (1230)
+.......-..... ..-+..+-++ .-....|...+.+.+.....++.||-+
T Consensus 73 ~~~~~~~~~~~~~~----~~~~~~vl~g---~p~~~~q~~~~~~~~~~~~~~i~l~~~ 123 (196)
T d1ukza_ 73 TLALLRNAISDNVK----ANKHKFLIDG---FPRKMDQAISFERDIVESKFILFFDCP 123 (196)
T ss_dssp HHHHHHHHHHHHHH----TTCCEEEEET---CCCSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HHHHHHHHHHHHHC----CCCCCEEEEC---CCHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 78999999886400----3777535404---313689999999861545543125798
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=92.98 E-value=0.035 Score=29.06 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999848999489999999417
Q 000909 385 SVALVGASGSGKSTAIALVQRF 406 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~ 406 (1230)
++++||.+|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999679
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=92.98 E-value=0.026 Score=29.97 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=22.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 979999848999489999999417879
Q 000909 383 GKSVALVGASGSGKSTAIALVQRFYDA 409 (1230)
Q Consensus 383 g~~~~ivG~sGsGKSTl~~ll~~~~~~ 409 (1230)
.-.++|+|+.|+|||||+..+.+.+..
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~ 80 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIR 80 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 328974389999899999999999975
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.96 E-value=0.18 Score=23.56 Aligned_cols=26 Identities=31% Similarity=0.561 Sum_probs=18.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 97999984899948999999941787
Q 000909 383 GKSVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 383 g~~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
-..+++|||+|+||||.+--|...+.
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 97999989999998999999999999
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=92.85 E-value=0.035 Score=28.97 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998489994899999994178
Q 000909 385 SVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
.+.++|++||||||+.+.|...+
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 39998999998899999999983
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=92.83 E-value=0.031 Score=29.42 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=19.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999984899948999999941787
Q 000909 384 KSVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 384 ~~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
+.+.++|++||||||+.+.+...+.
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9889988999988999999999949
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.83 E-value=0.056 Score=27.43 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=24.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9718939999848999978899998512
Q 000909 1016 EVKPGTSVGLVGKSGCGKSTVIGLIQRF 1043 (1230)
Q Consensus 1016 ~I~~Ge~vaIvG~SGsGKSTL~~lL~rl 1043 (1230)
-+++|+.+-|.||+||||||++.-++.-
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9859979999958999999999999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.80 E-value=0.037 Score=28.82 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 97999984899948999999941787
Q 000909 383 GKSVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 383 g~~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
.-.++|-|..||||||+++.|...+.
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 61999889999888999999998707
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=92.76 E-value=0.019 Score=31.11 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=11.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999848999489999999417
Q 000909 385 SVALVGASGSGKSTAIALVQRF 406 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~ 406 (1230)
+++++|++++|||||++.|.+.
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999889999899999998589
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=92.72 E-value=0.024 Score=30.24 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998489994899999994178
Q 000909 385 SVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
.+.|.||+||||||+++.|..-|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=92.70 E-value=0.047 Score=28.03 Aligned_cols=24 Identities=38% Similarity=0.688 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984899997889999851256
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFYD 1045 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~~ 1045 (1230)
.++|+|+.|||||||++.|.+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=92.68 E-value=0.04 Score=28.54 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999848999489999999417
Q 000909 385 SVALVGASGSGKSTAIALVQRF 406 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~ 406 (1230)
++.++|++|+|||||++-+.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.66 E-value=0.034 Score=29.12 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998489994899999994178
Q 000909 385 SVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
.+.|.||.||||||.++.|...|
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.66 E-value=0.031 Score=29.46 Aligned_cols=29 Identities=34% Similarity=0.526 Sum_probs=22.8
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 83897999984899948999999941787
Q 000909 380 VKAGKSVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 380 i~~g~~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
++.+..+.|+||.||||||+.+.|...|.
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~g 33 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYG 33 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 46782899989999987999999999869
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.59 E-value=0.021 Score=30.68 Aligned_cols=44 Identities=27% Similarity=0.325 Sum_probs=33.1
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC-CC-CCCEEEECCEECCC
Q ss_conf 7189399998489999788999985125-69-98748889940689
Q 000909 1017 VKPGTSVGLVGKSGCGKSTVIGLIQRFY-DV-EQGSVRVDGMDVRE 1060 (1230)
Q Consensus 1017 I~~Ge~vaIvG~SGsGKSTL~~lL~rl~-~~-~~G~I~idG~di~~ 1060 (1230)
=++|..+.+.|.||||||||++.|..-+ .. ..-.+.+||-++++
T Consensus 21 ~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~ 66 (208)
T d1m7ga_ 21 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF 66 (208)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHH
T ss_conf 8998699998999999899999999887774275089975367887
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=92.58 E-value=0.2 Score=23.20 Aligned_cols=36 Identities=31% Similarity=0.464 Sum_probs=22.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 189399998489999788999985125699874888
Q 000909 1018 KPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRV 1053 (1230)
Q Consensus 1018 ~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~i 1053 (1230)
++...+++|||+|+||||.+.=|...+.-..-+|.+
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~l 44 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVL 44 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 999899998999998899999999999977990699
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.57 E-value=0.2 Score=23.19 Aligned_cols=36 Identities=33% Similarity=0.419 Sum_probs=23.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 189399998489999788999985125699874888
Q 000909 1018 KPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRV 1053 (1230)
Q Consensus 1018 ~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~i 1053 (1230)
+....+++|||+|+||||.+.=|...+.-...+|.+
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~l 45 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGL 45 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 999899998999999899999999999977993699
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.56 E-value=0.099 Score=25.55 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=15.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998489994899999994
Q 000909 385 SVALVGASGSGKSTAIALVQ 404 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~ 404 (1230)
+++++|++|+|||||++-+.
T Consensus 6 Kv~liG~~~vGKTsLl~~~~ 25 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFV 25 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89999989929899999997
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.55 E-value=0.038 Score=28.71 Aligned_cols=35 Identities=17% Similarity=0.504 Sum_probs=25.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 8979999848999489999999417879986699899
Q 000909 382 AGKSVALVGASGSGKSTAIALVQRFYDADDGIVRIDG 418 (1230)
Q Consensus 382 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 418 (1230)
|+.-+.++||+|||||.|++.+.+.+... -+.+++
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~~--~~~i~~ 82 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLANAP--FIKVEA 82 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCC--EEEEEG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCCC--HHCCCC
T ss_conf 98669998999988889999986213221--000344
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.55 E-value=0.018 Score=31.25 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999984899948999999941787
Q 000909 384 KSVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 384 ~~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
-.+||.|+|||||||+.+.+...+.
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989997809999999999971
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.48 E-value=0.029 Score=29.67 Aligned_cols=27 Identities=19% Similarity=0.454 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 893999984899997889999851256
Q 000909 1019 PGTSVGLVGKSGCGKSTVIGLIQRFYD 1045 (1230)
Q Consensus 1019 ~Ge~vaIvG~SGsGKSTL~~lL~rl~~ 1045 (1230)
++..|+|-|+.||||||++++|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=92.47 E-value=0.036 Score=28.88 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999848999489999999417879
Q 000909 385 SVALVGASGSGKSTAIALVQRFYDA 409 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~~~ 409 (1230)
.++|-||+||||+|+.+.|..-|..
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl 29 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQW 29 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 8997799988989999999999699
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.47 E-value=0.029 Score=29.63 Aligned_cols=23 Identities=39% Similarity=0.442 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99984899997889999851256
Q 000909 1023 VGLVGKSGCGKSTVIGLIQRFYD 1045 (1230)
Q Consensus 1023 vaIvG~SGsGKSTL~~lL~rl~~ 1045 (1230)
|.|+|||||||+||++.|...++
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.46 E-value=0.03 Score=29.50 Aligned_cols=118 Identities=19% Similarity=0.180 Sum_probs=64.4
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHHCCCCCCCC
Q ss_conf 71893999984899997889999851256998748889940689896888650168702566786448888623999999
Q 000909 1017 VKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDAS 1096 (1230)
Q Consensus 1017 I~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNi~~~~~~~s 1096 (1230)
++.+..+.|+||.||||||+++.|..-| |-..|+.-+ -+|+.+. ..+ ...-.+.+.+.-+ ...+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is~g~-------llr~~~~---~~~-~~~~~~~~~~~~~-~~~~ 68 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLSTGD-------LLRAEVS---SGS-ARGKMLSEIMEKG-QLVP 68 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEEHHH-------HHHHHHH---HTC-HHHHHHHHHHTTT-CCCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEECCH-------HHHHHHH---HHH-HHHHHHHHHHHHC-CCCC
T ss_conf 4678289998999998799999999986----984683347-------8999998---767-6514567777631-3776
Q ss_pred HHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 98999999982309999812023332115999999925999999999970299877861666
Q 000909 1097 ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEAT 1158 (1230)
Q Consensus 1097 ~~~i~~al~~a~l~~~i~~Lp~Gldt~ige~G~~LSgGQrQrlaLARAll~~~~ILiLDEaT 1158 (1230)
++-+.+..... +...+...+..+-+ .+..-..|.-.+.+.+.....++.+|.+.
T Consensus 69 ~~~~~~~~~~~-----l~~~~~~~~g~ild---g~pr~~~qa~~~~~~~~~~~~~~~~~~~~ 122 (194)
T d3adka_ 69 LETVLDMLRDA-----MVAKVDTSKGFLID---GYPREVKQGEEFERKIGQPTLLLYVDAGP 122 (194)
T ss_dssp HHHHHHHHHHH-----HHTTTTTCSCEEEE---SCCSSHHHHHHHHHHTCCCSEEEEEECCH
T ss_pred HHEEEEEHHHH-----HHHCCCCCCCCEEE---ECCCHHHHHHHHHHHHCCCCCHHCCCCCH
T ss_conf 22244102456-----64032235660243---11101578999999837752000033312
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.41 E-value=0.046 Score=28.11 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998489994899999994178
Q 000909 385 SVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
+++++|++|+|||||++.+.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.36 E-value=0.054 Score=27.54 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=24.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 38979999848999489999999417879
Q 000909 381 KAGKSVALVGASGSGKSTAIALVQRFYDA 409 (1230)
Q Consensus 381 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~~ 409 (1230)
++|.+++|.|+-||||||++++|...+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.32 E-value=0.079 Score=26.30 Aligned_cols=33 Identities=33% Similarity=0.370 Sum_probs=22.7
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4013049983897999984899948999999941
Q 000909 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 372 ~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
.++..-+.+ .|.-+.+.|+||+||||++..+..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 178999999-999999981899998999999998
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.27 E-value=0.041 Score=28.47 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998489994899999994178
Q 000909 385 SVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
.+.|+|+.||||||+.+.|...|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.27 E-value=0.035 Score=29.00 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998489994899999994178
Q 000909 385 SVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
.++|.|+.|||||||...|...+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99837998788999999999999
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.20 E-value=0.049 Score=27.88 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999848999978899998512
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRF 1043 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl 1043 (1230)
.|+|||++|+|||||++.|.+-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.19 E-value=0.055 Score=27.53 Aligned_cols=46 Identities=22% Similarity=0.536 Sum_probs=36.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEEECCCC
Q ss_conf 799998489994899999994178799866998996269888888750107880676
Q 000909 384 KSVALVGASGSGKSTAIALVQRFYDADDGIVRIDGVDIRRLQLKWVRREMGLVSQEH 440 (1230)
Q Consensus 384 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~ 440 (1230)
+-+.++||||||||-|++.|.+..+.+ =+..|+.... ..|||..|.
T Consensus 50 sNILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fT---------eaGYvG~DV 95 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFT---------EVGYVGKEV 95 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC-------------CCCCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCC--EEEEECCEEE---------ECCEEECCH
T ss_conf 647998999988999999999873898--8986255114---------111110444
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=92.12 E-value=0.056 Score=27.42 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998489999788999985125
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFY 1044 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~ 1044 (1230)
+|+++|++|+|||||++.|.|-.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=92.11 E-value=0.044 Score=28.24 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998489994899999994178
Q 000909 385 SVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
++.|+|+.||||||+.+.|...|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.06 E-value=0.054 Score=27.58 Aligned_cols=43 Identities=26% Similarity=0.475 Sum_probs=29.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCE
Q ss_conf 99998489999788999985125699874888994068989688865016
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTA 1071 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1071 (1230)
.+.++|++||||||+++.|.+.+.-. |.+..-++.+..|..+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~~~-------~~~~~~~~~D~~r~~~~ 46 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLNFI-------GVPTREFNVGQYRRDMV 46 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT-------TCCEEEEEHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-------CCCCEEECCCCEEHHHC
T ss_conf 99998999999999999999999746-------99973974530113230
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.00 E-value=0.059 Score=27.28 Aligned_cols=24 Identities=33% Similarity=0.446 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984899997889999851256
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFYD 1045 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~~ 1045 (1230)
++.|+|+.||||||+++.|..-|.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899988999998999999999879
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=92.00 E-value=0.06 Score=27.23 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998489999788999985125
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFY 1044 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~ 1044 (1230)
+|+++|++|+|||||++.|.+-.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.95 E-value=0.041 Score=28.48 Aligned_cols=24 Identities=38% Similarity=0.429 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984899948999999941787
Q 000909 385 SVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
.+.++|++||||||+.+++...+.
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 489988999988999999999849
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=91.94 E-value=0.056 Score=27.43 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998489994899999994178
Q 000909 385 SVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
.+||+|+..+|||||++.|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.93 E-value=0.13 Score=24.54 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899948999999941
Q 000909 385 SVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
+++++|++|+|||||++-+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899789999999973
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=91.84 E-value=0.063 Score=27.06 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984899997889999851256
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFYD 1045 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~~ 1045 (1230)
++.|+|+.||||||+++.|..-|.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899988999987999999999879
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.84 E-value=0.062 Score=27.10 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=57.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHHCCCCCCCCHHHHH
Q ss_conf 99998489999788999985125699874888994068989688865016870256678644888862399999998999
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVV 1101 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNi~~~~~~~s~~~i~ 1101 (1230)
+|.|+||.||||||.++.|..-| |-..|+. -+-+|..+ .++...+.-.+.+.+.-+. ..+|+.+.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~----g~~~i~~-------g~llR~~~---~~~~~~~~~~~~~~~~~~~-~v~d~~~~ 67 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY----GYTHLSA-------GELLRDER---KNPDSQYGELIEKYIKEGK-IVPVEITI 67 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH-------HHHHHHHH---HCTTSTTHHHHHHHHHTTC-CCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEECH-------HHHHHHHH---HHHHHHHHHHHHHHHHCCC-CCCCCHHH
T ss_conf 99997999999899999999986----9926768-------89999988---7620468999999970697-21134036
Q ss_pred HHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC--CE-EEEECC
Q ss_conf 999982309999812023332115999999925999999999970299--87-786166
Q 000909 1102 EAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNP--TI-LLLDEA 1157 (1230)
Q Consensus 1102 ~al~~a~l~~~i~~Lp~Gldt~ige~G~~LSgGQrQrlaLARAll~~~--~I-LiLDEa 1157 (1230)
..+...-. ....... .-+..+.+ |... .+.|...+.+.+-... .+ +++|.+
T Consensus 68 ~~~~~~~~-~~~~~~~-~~~~~~~~-g~pr--~~~~~~~l~~~~~~~~~~~~vi~l~~~ 121 (194)
T d1teva_ 68 SLLKREMD-QTMAANA-QKNKFLID-GFPR--NQDNLQGWNKTMDGKADVSFVLFFDCN 121 (194)
T ss_dssp HHHHHHHH-HHHHHCT-TCCEEEEE-SCCC--SHHHHHHHHHHHTTTCEEEEEEEEECC
T ss_pred HHHHHHHC-CCCHHHH-CCCCEEEC-CCHH--HHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 78887641-2100011-24511101-1030--489999986442105543389962476
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=91.82 E-value=0.047 Score=28.02 Aligned_cols=25 Identities=40% Similarity=0.529 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999984899948999999941787
Q 000909 384 KSVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 384 ~~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
+.+.|.|++||||||+++.|...+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1999989899898999999999998
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.80 E-value=0.071 Score=26.64 Aligned_cols=30 Identities=23% Similarity=0.203 Sum_probs=25.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 189399998489999788999985125699
Q 000909 1018 KPGTSVGLVGKSGCGKSTVIGLIQRFYDVE 1047 (1230)
Q Consensus 1018 ~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~ 1047 (1230)
++|-.|+|.|+-||||||++++|..-+...
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~~ 30 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCAA 30 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 980599998998889999999999999877
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=91.77 E-value=0.069 Score=26.74 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=25.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 79999848999489999999417879986699899
Q 000909 384 KSVALVGASGSGKSTAIALVQRFYDADDGIVRIDG 418 (1230)
Q Consensus 384 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 418 (1230)
..+.+.||+||||||+++.|.+.+... -+.+++
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~~--~~~i~~ 65 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQGN--VIVIDN 65 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTTC--CEEECT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCC--EEEEEC
T ss_conf 799988979988999999999986515--489832
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=91.74 E-value=0.085 Score=26.07 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984899948999999941787
Q 000909 385 SVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
+++++|+.|+|||||++.+.+...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999999999899999999808998
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=91.73 E-value=0.045 Score=28.16 Aligned_cols=25 Identities=28% Similarity=0.499 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999848999978899998512569
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFYDV 1046 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~~~ 1046 (1230)
.|||-||+||||||++++|..-|..
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg~ 29 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFGF 29 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997899987989999999999699
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=91.72 E-value=0.048 Score=27.96 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984899997889999851256
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFYD 1045 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~~ 1045 (1230)
++.|.||.||||||+++.|..-|.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~~ 28 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKYQ 28 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999988999998999999999879
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=91.72 E-value=0.053 Score=27.63 Aligned_cols=31 Identities=32% Similarity=0.417 Sum_probs=23.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 39999848999978899998512569987488899
Q 000909 1021 TSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDG 1055 (1230)
Q Consensus 1021 e~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG 1055 (1230)
+.+-++|++||||||+.+.|..-+.. -++|+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~Lg~----~~id~ 33 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARALGY----EFVDT 33 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTC----EEEEH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCC----CEEEH
T ss_conf 98899889999889999999999499----87865
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.68 E-value=0.049 Score=27.86 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=22.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999984899997889999851256
Q 000909 1021 TSVGLVGKSGCGKSTVIGLIQRFYD 1045 (1230)
Q Consensus 1021 e~vaIvG~SGsGKSTL~~lL~rl~~ 1045 (1230)
-.|+|-|..||||||++++|.+.+.
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1999889999888999999998707
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.66 E-value=0.064 Score=26.99 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999848999978899998512
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRF 1043 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl 1043 (1230)
+|+|+|++|+|||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=91.63 E-value=0.043 Score=28.34 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=9.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998489999788999985125
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFY 1044 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~ 1044 (1230)
+|||+|+-|+|||||+..|.+.+
T Consensus 56 ~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 56 RLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89743899998999999999999
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=91.62 E-value=0.11 Score=25.13 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=23.0
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4013049983897999984899948999999941
Q 000909 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 372 ~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
.++..-+ --.|.-+.++|+||+||||++..+..
T Consensus 4 ~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLV-DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEE-EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEEE-EECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 2899999-99999999980899998999999998
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.60 E-value=0.16 Score=24.05 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf 999984899948999999941-----78799866
Q 000909 385 SVALVGASGSGKSTAIALVQR-----FYDADDGI 413 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~-----~~~~~~G~ 413 (1230)
+++++|..|+|||||++-+.. .|.|+.|.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~ 39 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD 39 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 9999998995889999999729998654775343
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.60 E-value=0.054 Score=27.58 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=17.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984899948999999941787
Q 000909 385 SVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
++.++||.||||||..+.|...+.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899987999998999999999869
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=91.57 E-value=0.068 Score=26.81 Aligned_cols=21 Identities=48% Similarity=0.540 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899948999999941
Q 000909 385 SVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
.+||+|..||||||.++.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=91.55 E-value=0.063 Score=27.04 Aligned_cols=22 Identities=41% Similarity=0.792 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999848999978899998512
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRF 1043 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl 1043 (1230)
.+||+|++||||||+++.|..+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999898877899999999987
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.54 E-value=0.078 Score=26.32 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 897999984899948999999941787
Q 000909 382 AGKSVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 382 ~g~~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
+|.++++-|+-||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=91.50 E-value=0.26 Score=22.31 Aligned_cols=40 Identities=33% Similarity=0.468 Sum_probs=25.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEE
Q ss_conf 1893999984899997889999851256998748889940
Q 000909 1018 KPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMD 1057 (1230)
Q Consensus 1018 ~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~d 1057 (1230)
++-..+++|||+|+||||.+.=|...+.-..-+|.+=..|
T Consensus 7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~D 46 (211)
T d2qy9a2 7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 46 (211)
T ss_dssp CTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 9997999989999998999999999999779947998232
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.46 E-value=0.079 Score=26.31 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899948999999941
Q 000909 385 SVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
+++++|++|+|||||++-+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=91.40 E-value=0.0026 Score=37.64 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=27.8
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 401304998389799998489994899999994178
Q 000909 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 372 ~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
.+++.++.+.+| .+.|+|+|||||||++.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 870279974998-08998899998799999999996
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=91.40 E-value=0.06 Score=27.21 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=24.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9999848999978899998512569987488899
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDG 1055 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG 1055 (1230)
.+.|+|++||||||+.+.|...+ |--++|.
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l----~~~~~d~ 31 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL----DLVFLDS 31 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH----TCEEEEH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH----CCCEEEC
T ss_conf 39998999998899999999983----9987836
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=91.38 E-value=0.27 Score=22.23 Aligned_cols=77 Identities=14% Similarity=0.110 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEE
Q ss_conf 92599999999997029987786166678688979999-999998609985999815914664039899994967988
Q 000909 1132 SGGQRQRIAIARAIIRNPTILLLDEATSALDVQSEQVV-QEALDRIMMGRTTIVVAHRLNTIKKLDSIALVADGRVVE 1208 (1230)
Q Consensus 1132 SgGQrQrlaLARAll~~~~ILiLDEaTS~LD~~te~~i-~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~vl~~G~Ive 1208 (1230)
...+......+...++++.+++++=.-..-+...+... .+.+.....++.+|++..+.+........--...-.+.+
T Consensus 64 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~~~~~~~ 141 (161)
T d2gj8a1 64 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIR 141 (161)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEEEEETTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 520247899999998741332011025654203455544455542014101020465444335588798727996799
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.29 E-value=0.085 Score=26.05 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=24.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8939999848999978899998512569
Q 000909 1019 PGTSVGLVGKSGCGKSTVIGLIQRFYDV 1046 (1230)
Q Consensus 1019 ~Ge~vaIvG~SGsGKSTL~~lL~rl~~~ 1046 (1230)
+|..|+|-|+-||||||+++.|...+..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~ 28 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQ 28 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9878999899888799999999999996
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=91.27 E-value=0.046 Score=28.12 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999848999978899998512
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRF 1043 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl 1043 (1230)
.|||+|++++|||||++.|.|-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.22 E-value=0.083 Score=26.15 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=25.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8979999848999489999999417879
Q 000909 382 AGKSVALVGASGSGKSTAIALVQRFYDA 409 (1230)
Q Consensus 382 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~ 409 (1230)
+|.++++-|.-||||||++++|...+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=91.22 E-value=0.076 Score=26.44 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=19.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999848999978899998512
Q 000909 1021 TSVGLVGKSGCGKSTVIGLIQRF 1043 (1230)
Q Consensus 1021 e~vaIvG~SGsGKSTL~~lL~rl 1043 (1230)
=+++|||++|+|||||++.+.+-
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 29999999998999999999679
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.20 E-value=0.18 Score=23.64 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHH-HCC
Q ss_conf 9999848999489999999-417
Q 000909 385 SVALVGASGSGKSTAIALV-QRF 406 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll-~~~ 406 (1230)
+++++|..|+|||||++-+ .+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~ 27 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999919899999997299
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=91.18 E-value=0.0026 Score=37.65 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=28.3
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 311102797189399998489999788999985125
Q 000909 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFY 1044 (1230)
Q Consensus 1009 vL~~isl~I~~Ge~vaIvG~SGsGKSTL~~lL~rl~ 1044 (1230)
.+++.++.+.+| .+.|+|++||||||++.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 870279974998-08998899998799999999996
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.13 E-value=0.11 Score=25.29 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=23.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 983897999984899948999999941
Q 000909 379 KVKAGKSVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 379 ~i~~g~~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
-+++|+.+.|.|++||||||++.-++-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 986996999983899988999999999
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.12 E-value=0.083 Score=26.14 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=25.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8939999848999978899998512569
Q 000909 1019 PGTSVGLVGKSGCGKSTVIGLIQRFYDV 1046 (1230)
Q Consensus 1019 ~Ge~vaIvG~SGsGKSTL~~lL~rl~~~ 1046 (1230)
+|..|+|-|..||||||++++|...+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=91.08 E-value=0.08 Score=26.27 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999848999978899998512
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRF 1043 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl 1043 (1230)
||.++|++|+|||||++-+.+-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=91.08 E-value=0.062 Score=27.11 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=29.0
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4013049983897999984899948999999941787
Q 000909 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 372 ~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
+++. =+.+-+|++.+|.|++|+|||||+.-+.+...
T Consensus 33 ~ID~-l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 33 VLDL-ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHHH-HSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred EEEE-CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 5641-25645787556867999887899999999775
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.05 E-value=0.082 Score=26.19 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=19.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 79999848999489999999417
Q 000909 384 KSVALVGASGSGKSTAIALVQRF 406 (1230)
Q Consensus 384 ~~~~ivG~sGsGKSTl~~ll~~~ 406 (1230)
..++|+|+.|+|||||++.+.+-
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999998989999999809
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=91.04 E-value=0.082 Score=26.18 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999848999978899998512
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRF 1043 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl 1043 (1230)
.+||+|..||||||+++.|..+
T Consensus 4 iIgITG~igSGKStv~~~l~~~ 25 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTDL 25 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9998888878899999999987
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.03 E-value=0.084 Score=26.07 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999848999978899998512
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRF 1043 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl 1043 (1230)
.|+|+|++|+|||||++.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=90.93 E-value=0.12 Score=24.84 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998489999788999985125
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFY 1044 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~ 1044 (1230)
+++++|+.|+|||||++.|.+-.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.91 E-value=0.11 Score=25.29 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=23.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 97189399998489999788999985
Q 000909 1016 EVKPGTSVGLVGKSGCGKSTVIGLIQ 1041 (1230)
Q Consensus 1016 ~I~~Ge~vaIvG~SGsGKSTL~~lL~ 1041 (1230)
-+++|+.+-|.|++||||||++.-++
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 98699699998389998899999999
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=90.88 E-value=0.18 Score=23.56 Aligned_cols=30 Identities=20% Similarity=0.413 Sum_probs=24.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 979999848999489999999417879986
Q 000909 383 GKSVALVGASGSGKSTAIALVQRFYDADDG 412 (1230)
Q Consensus 383 g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G 412 (1230)
...+.|.||+|+||||+++.+...+....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 881688898999899999999999754468
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.88 E-value=0.093 Score=25.76 Aligned_cols=120 Identities=12% Similarity=0.039 Sum_probs=56.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHHCCCCCCCCHHHH
Q ss_conf 39999848999978899998512569987488899406898968886501687025667864488886239999999899
Q 000909 1021 TSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEV 1100 (1230)
Q Consensus 1021 e~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNi~~~~~~~s~~~i 1100 (1230)
.-+-++||.||||||+++.|.+-+.. +-+.+++ +.+|+... . +.+..+... ....+..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~--------d~~~~~~~---~----~~~~~~~~~-----~~~~~~~ 90 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN--------DTFKQQHP---N----FDELVKLYE-----KDVVKHV 90 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT--------HHHHTTST---T----HHHHHHHHG-----GGCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC--CEEEEEC--------HHHHHHHC---C----CCCCCHHHH-----HHHHHHH
T ss_conf 79998897998899999999998651--5489832--------89999852---5----764113306-----7899998
Q ss_pred HHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHH
Q ss_conf 999998230999981202333211599999992599999999997029987786166678688979
Q 000909 1101 VEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEATSALDVQSE 1166 (1230)
Q Consensus 1101 ~~al~~a~l~~~i~~Lp~Gldt~ige~G~~LSgGQrQrlaLARAll~~~~ILiLDEaTS~LD~~te 1166 (1230)
...............+..+.+... +.+...+--..+ +.+.+......+.+..++...+..-.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~ 152 (273)
T d1gvnb_ 91 TPYSNRMTEAIISRLSDQGYNLVI-EGTGRTTDVPIQ---TATMLQAKGYETKMYVMAVPKINSYL 152 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEE-CCCCCCSHHHHH---HHHHHHTTTCEEEEEEECCCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHCCCCCC-CCCCCCHHHHHH---HHHHHHHCCCEEEEEECCCCCHHHHH
T ss_conf 754321289999999861789754-555565678999---99999876974999744787202222
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.86 E-value=0.064 Score=26.99 Aligned_cols=36 Identities=14% Similarity=0.421 Sum_probs=21.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEC
Q ss_conf 39999848999978899998512569987488899406
Q 000909 1021 TSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDV 1058 (1230)
Q Consensus 1021 e~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di 1058 (1230)
.-+.++||+|+|||.|++.|.+.+.. --+.+|+-++
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~s~~ 85 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKF 85 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCC--CHHCCCCCCC
T ss_conf 66999899998888999998621322--1000344330
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.85 E-value=0.071 Score=26.66 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=13.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998489994899999994178
Q 000909 385 SVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
.+.|.||.||||||+.+.|...|
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.75 E-value=0.089 Score=25.92 Aligned_cols=110 Identities=18% Similarity=0.138 Sum_probs=52.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHHCCCCCCCCHHHHH
Q ss_conf 99998489999788999985125699874888994068989688865016870256678644888862399999998999
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEVV 1101 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNi~~~~~~~s~~~i~ 1101 (1230)
++.|+||.||||||+++.|..-|.. ..++.- +-+|+... ...-....+++-+.-+. ..+++.+.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~~----~~i~~~-------~llr~~~~----~~~~~~~~i~~~~~~g~-~~~d~~v~ 65 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYGI----PQISTG-------DMLRAAVK----SGSELGKQAKDIMDAGK-LVTDELVI 65 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC----CEEEHH-------HHHHHHHH----HTCTTTGGGHHHHHHTC-CCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC----CEECHH-------HHHHHHHC----CCCHHHHHHHHHHHCCC-CCCCHHHH
T ss_conf 8999879999989999999998699----555101-------47677550----39858999999997699-87116399
Q ss_pred HHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEE-EEECC
Q ss_conf 999982309999812023332115999999925999999999970299877-86166
Q 000909 1102 EAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTIL-LLDEA 1157 (1230)
Q Consensus 1102 ~al~~a~l~~~i~~Lp~Gldt~ige~G~~LSgGQrQrlaLARAll~~~~IL-iLDEa 1157 (1230)
..+.. .+.. ++.-+..+-+ |..-+.. |--++... ..+|.++ .||=|
T Consensus 66 ~~~~~-----~~~~-~~~~~g~i~~-g~pr~~~--~~~~~~~~-~~~~~~vi~L~~~ 112 (179)
T d1e4va1 66 ALVKE-----RIAQ-EDCRNGFLLD-GFPRTIP--QADAMKEA-GINVDYVLEFDVP 112 (179)
T ss_dssp HHHHH-----HHTS-GGGGGCEEEE-SCCCSHH--HHHHHHHT-TCCCSEEEEEECC
T ss_pred HHHHH-----HHCC-CCCCCCEEEC-CCCCCHH--HHHHHHHC-CCCCEEEEEECCC
T ss_conf 99998-----5225-2101663422-4453057--76554440-6870399984462
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.75 E-value=0.19 Score=23.31 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=25.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE-----EEECCEE
Q ss_conf 999984899997889999851-----25699874-----8889940
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQR-----FYDVEQGS-----VRVDGMD 1057 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~r-----l~~~~~G~-----I~idG~d 1057 (1230)
|++++|.+|+|||||++-+.+ -|.|+-|. +.+||..
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~ 49 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSI 49 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCEEECCCC
T ss_conf 8999998997989999999709998763761331011210002200
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=90.71 E-value=0.067 Score=26.85 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=22.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 189399998489999788999985125
Q 000909 1018 KPGTSVGLVGKSGCGKSTVIGLIQRFY 1044 (1230)
Q Consensus 1018 ~~Ge~vaIvG~SGsGKSTL~~lL~rl~ 1044 (1230)
++.-|+++||++|+|||||++.|.+=.
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 777789999999989899999996788
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=90.71 E-value=0.1 Score=25.39 Aligned_cols=44 Identities=30% Similarity=0.354 Sum_probs=29.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC
Q ss_conf 18939999848999978899998512569987488899406898
Q 000909 1018 KPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVREL 1061 (1230)
Q Consensus 1018 ~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~ 1061 (1230)
+++..+++|||+|+||||.+.=|...+.-..-++.+=..|.-..
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~ 47 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRA 47 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSST
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 99779999899999889999999999997799079998136665
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.67 E-value=0.018 Score=31.14 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=16.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999848999489999999417
Q 000909 385 SVALVGASGSGKSTAIALVQRF 406 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~ 406 (1230)
+++++|++++|||||++.|.|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.65 E-value=0.31 Score=21.74 Aligned_cols=44 Identities=16% Similarity=0.164 Sum_probs=32.3
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHH
Q ss_conf 988998377789997979999999998429973999822920233
Q 000909 512 PVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTVR 556 (1230)
Q Consensus 512 ~~ililDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~ith~~~~~~ 556 (1230)
..++++||+-. ++......+.+.+.+...+...|++|++.+-+.
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~ 159 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 159 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred CEEEEEECCCC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
T ss_conf 87999978110-899999999999856898869999738856367
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=90.62 E-value=0.15 Score=24.18 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=16.5
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 8389799998489994899999994
Q 000909 380 VKAGKSVALVGASGSGKSTAIALVQ 404 (1230)
Q Consensus 380 i~~g~~~~ivG~sGsGKSTl~~ll~ 404 (1230)
--.|.-+.|.|+||+||||++..+.
T Consensus 12 ~~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 12 DVYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred EECCEEEEEEECCCCCHHHHHHHHH
T ss_conf 9999999998089999999999999
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.54 E-value=0.096 Score=25.66 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999848999978899998512
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRF 1043 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl 1043 (1230)
|++++|++|+|||||++.|.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=90.52 E-value=0.066 Score=26.90 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999848999978899998512569
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFYDV 1046 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~~~ 1046 (1230)
.|+|-||.||||||+.+.|..-|..
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl 29 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQW 29 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 8997799988989999999999699
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=90.51 E-value=0.096 Score=25.65 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=19.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8979999848999489999999417
Q 000909 382 AGKSVALVGASGSGKSTAIALVQRF 406 (1230)
Q Consensus 382 ~g~~~~ivG~sGsGKSTl~~ll~~~ 406 (1230)
+.=+++++|..|||||||++-+.+.
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 8579999999998989999999668
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.47 E-value=0.097 Score=25.63 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899948999999941
Q 000909 385 SVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
+++++|++|+|||||++-+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999973
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=90.39 E-value=0.058 Score=27.35 Aligned_cols=21 Identities=43% Similarity=0.722 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999848999978899998512
Q 000909 1023 VGLVGKSGCGKSTVIGLIQRF 1043 (1230)
Q Consensus 1023 vaIvG~SGsGKSTL~~lL~rl 1043 (1230)
|||+|++|+|||||++.|.+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.38 E-value=0.1 Score=25.35 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984899997889999851256
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFYD 1045 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~~ 1045 (1230)
++.|.||.||||||+++.|..-|.
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~g 25 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKLG 25 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899988999997999999999989
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.35 E-value=0.12 Score=24.93 Aligned_cols=27 Identities=11% Similarity=0.069 Sum_probs=23.4
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 983897999984899948999999941
Q 000909 379 KVKAGKSVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 379 ~i~~g~~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
-+++|+.+.|.|++|||||++..-++.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 976897999988998878899999999
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.33 E-value=0.097 Score=25.62 Aligned_cols=25 Identities=36% Similarity=0.432 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999848999978899998512569
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFYDV 1046 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~~~ 1046 (1230)
++.++|++||||||+.++|..-+..
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l~~ 27 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKALGV 27 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 4899889999889999999998499
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=90.26 E-value=0.11 Score=25.18 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89799998489994899999994178
Q 000909 382 AGKSVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 382 ~g~~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
.+..+.|.||+|+|||||++-++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.17 E-value=0.12 Score=24.84 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=22.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 79999848999489999999417879
Q 000909 384 KSVALVGASGSGKSTAIALVQRFYDA 409 (1230)
Q Consensus 384 ~~~~ivG~sGsGKSTl~~ll~~~~~~ 409 (1230)
..+.+.||+|+||||+++++++.+..
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~~ 78 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELGY 78 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 44999879999888999999999875
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=90.17 E-value=0.064 Score=27.00 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999848999978899998512569
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFYDV 1046 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~~~ 1046 (1230)
.+.|.|++||||||+++.|...+.-
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999898998989999999999987
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.08 E-value=0.12 Score=25.04 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999848999978899998512
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRF 1043 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl 1043 (1230)
.|||.|+.||||||+...|...
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9983799878899999999999
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.00 E-value=0.21 Score=22.98 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHH-CC----CCCCCCEE
Q ss_conf 99998489994899999994-17----87998669
Q 000909 385 SVALVGASGSGKSTAIALVQ-RF----YDADDGIV 414 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~-~~----~~~~~G~i 414 (1230)
+++++|.+|+|||||++-+. +. +.|+.|..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~ 41 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS 41 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 89999999979999999997399885457664520
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=89.99 E-value=0.11 Score=25.24 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 97999984899948999999941787
Q 000909 383 GKSVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 383 g~~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
.=.+.|+|+.||||||+.+.|..-|.
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~~~g 31 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITKHFE 31 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHBC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 21699988999987999999999979
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.98 E-value=0.19 Score=23.41 Aligned_cols=50 Identities=22% Similarity=0.347 Sum_probs=35.6
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHH
Q ss_conf 98389799998489994899999994178799866-99899626988888875
Q 000909 379 KVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI-VRIDGVDIRRLQLKWVR 430 (1230)
Q Consensus 379 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~-i~~~g~~i~~~~~~~~r 430 (1230)
-++.|..+.+.|++||||||++.-+....+...|. |++|... .+++++++
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a~ 106 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYAK 106 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC--CCCHHHHH
T ss_conf 8666336999648874889999999998754898899998976--67999999
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.96 E-value=0.15 Score=24.26 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=22.3
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 98389799998489994899999994
Q 000909 379 KVKAGKSVALVGASGSGKSTAIALVQ 404 (1230)
Q Consensus 379 ~i~~g~~~~ivG~sGsGKSTl~~ll~ 404 (1230)
-+++|+.+.|.|++||||||+..-++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 95588799998589898899999999
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=89.94 E-value=0.1 Score=25.38 Aligned_cols=111 Identities=18% Similarity=0.186 Sum_probs=54.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHHCCCCCCCCHHHH
Q ss_conf 39999848999978899998512569987488899406898968886501687025667864488886239999999899
Q 000909 1021 TSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLDASENEV 1100 (1230)
Q Consensus 1021 e~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNi~~~~~~~s~~~i 1100 (1230)
=++.|+||-||||||+.+.|..-|. -..|+- -+-+|+.+. +..-+...+.+.+.-+. ..+++.+
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~g----~~~is~-------gdllr~~~~----~~~~~~~~~~~~~~~~~-~v~~~~~ 70 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHFE----LKHLSS-------GDLLRDNML----RGTEIGVLAKTFIDQGK-LIPDDVM 70 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHBC----CEEEEH-------HHHHHHHHH----TTCHHHHHHHHHHHTTC-CCCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC----CEEECH-------HHHHHHHHH----HHHHHHHHHHHHHHHHH-HCCCHHH
T ss_conf 1699988999987999999999979----868718-------999999987----40156689998763664-1330344
Q ss_pred HHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 9999982309999812023332115999999925999999999970299877861666
Q 000909 1101 VEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLLDEAT 1158 (1230)
Q Consensus 1101 ~~al~~a~l~~~i~~Lp~Gldt~ige~G~~LSgGQrQrlaLARAll~~~~ILiLDEaT 1158 (1230)
....+.. + ... .... .+-+ |..-+ ..|.-.+.+. +.-..++.||-+.
T Consensus 71 ~~l~~~~-~----~~~-~~~~-~ild-GfPr~--~~q~~~l~~~-~~~~~vi~L~v~~ 117 (189)
T d2ak3a1 71 TRLVLHE-L----KNL-TQYN-WLLD-GFPRT--LPQAEALDRA-YQIDTVINLNVPF 117 (189)
T ss_dssp HHHHHHH-H----HHH-TTSC-EEEE-SCCCS--HHHHHHHHTT-CCCCEEEEEECCH
T ss_pred HHHHHHH-H----HHH-HHCC-CCCC-CCCCH--HHHHHHHHHC-CCCEEEEEEECCC
T ss_conf 5445554-4----212-1058-4244-52100--0678876315-7532999972441
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=89.91 E-value=0.09 Score=25.85 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=23.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9999848999489999999417879986
Q 000909 385 SVALVGASGSGKSTAIALVQRFYDADDG 412 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G 412 (1230)
.+.+.||+|+||||+++++...+....+
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~ 64 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNIH 64 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 4898799997388999999850388853
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.90 E-value=0.11 Score=25.09 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899948999999941
Q 000909 385 SVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
+++++|.+|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.88 E-value=0.14 Score=24.31 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=22.3
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 9718939999848999978899998
Q 000909 1016 EVKPGTSVGLVGKSGCGKSTVIGLI 1040 (1230)
Q Consensus 1016 ~I~~Ge~vaIvG~SGsGKSTL~~lL 1040 (1230)
-+++|+.+-|.|++||||||+..-+
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 9558879999858989889999999
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=89.86 E-value=0.17 Score=23.82 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=22.3
Q ss_pred EEECCCEEEEECCCCCCHHHHHH-HHH
Q ss_conf 98389799998489994899999-994
Q 000909 379 KVKAGKSVALVGASGSGKSTAIA-LVQ 404 (1230)
Q Consensus 379 ~i~~g~~~~ivG~sGsGKSTl~~-ll~ 404 (1230)
-+++|+.+.|.|++|+|||+|+. ++.
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~~~~ 48 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQFLY 48 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 996983999994799999999999999
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.84 E-value=0.14 Score=24.44 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899997889999851
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
|++++|++|+|||||++-+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.79 E-value=0.23 Score=22.75 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=18.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 7999984899948999999941
Q 000909 384 KSVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 384 ~~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
=+++++|.+|+|||||++-+.+
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999999899789999999971
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=89.73 E-value=0.12 Score=24.81 Aligned_cols=42 Identities=24% Similarity=0.266 Sum_probs=31.3
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEE
Q ss_conf 98389799998489994899999994178799866-9989962
Q 000909 379 KVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI-VRIDGVD 420 (1230)
Q Consensus 379 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~-i~~~g~~ 420 (1230)
-+++|..+.+.|++||||||++.-++...+...|. +++|...
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9667358998057774789999999999870898799986544
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=89.65 E-value=0.21 Score=23.01 Aligned_cols=33 Identities=33% Similarity=0.363 Sum_probs=26.6
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3111027971893999984899997889999851
Q 000909 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1009 vL~~isl~I~~Ge~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
.++.--+.+ .|.-+.|.|+||+||||++..|..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 178999999-999999981899998999999998
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.64 E-value=0.22 Score=22.82 Aligned_cols=29 Identities=28% Similarity=0.326 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf 999984899997889999851-----25699874
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQR-----FYDVEQGS 1050 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~r-----l~~~~~G~ 1050 (1230)
|+.++|.+|+|||||++-+.. -|.|+.|.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~ 40 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED 40 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 8999999997999999999739988545766452
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=89.62 E-value=0.11 Score=25.15 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899948999999941
Q 000909 385 SVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
+++++|+.|+|||||++-+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999899999999964
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.56 E-value=0.13 Score=24.53 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899948999999941
Q 000909 385 SVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
+++++|+.|+|||||++-+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999961
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.56 E-value=0.13 Score=24.54 Aligned_cols=27 Identities=11% Similarity=0.099 Sum_probs=24.0
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 971893999984899997889999851
Q 000909 1016 EVKPGTSVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1016 ~I~~Ge~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
-+++|+.+-|.|++|||||+++.-++.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 976897999988998878899999999
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.53 E-value=0.22 Score=22.82 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=17.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899948999999941
Q 000909 385 SVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
+++++|++|+|||||++-+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999984
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=89.51 E-value=0.17 Score=23.68 Aligned_cols=154 Identities=16% Similarity=0.044 Sum_probs=70.4
Q ss_pred EEECCCEEEEECCCCCCHHHHHH-HHHCCCCCCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHHCCCCCC
Q ss_conf 97189399998489999788999-98512569987488899406898968886501687025667864488886239999
Q 000909 1016 EVKPGTSVGLVGKSGCGKSTVIG-LIQRFYDVEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLD 1094 (1230)
Q Consensus 1016 ~I~~Ge~vaIvG~SGsGKSTL~~-lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNi~~~~~~ 1094 (1230)
-+++|+.+-|.|++|+|||+++. ++..........+.+.. .+.+....+....- + .
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s---~e~~~~~~~~~~~~-----------------~---~ 78 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT---FEETPQDIIKNARS-----------------F---G 78 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE---SSSCHHHHHHHHGG-----------------G---T
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCC---CCCCHHHHHHHHHH-----------------C---C
T ss_conf 99698399999479999999999999999985688742012---66799999999998-----------------4---9
Q ss_pred CCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHC--CCCCEEEEECCCCCCCHHH----HH
Q ss_conf 9998999999982309999812023332115999999925999-999999970--2998778616667868897----99
Q 000909 1095 ASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQ-RIAIARAII--RNPTILLLDEATSALDVQS----EQ 1167 (1230)
Q Consensus 1095 ~s~~~i~~al~~a~l~~~i~~Lp~Gldt~ige~G~~LSgGQrQ-rlaLARAll--~~~~ILiLDEaTS~LD~~t----e~ 1167 (1230)
...++..+. - ....-......+.-...+..... .+.-.+..+ .+|+++++|--++-.+... ..
T Consensus 79 ~~~~~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~~~~~~~~~ 148 (242)
T d1tf7a1 79 WDLAKLVDE---G-------KLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVR 148 (242)
T ss_dssp CCHHHHHHT---T-------SEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHH
T ss_pred CCHHHHHHH---C-------CHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 984898871---4-------302444210335444430245899999999998863122200207889987605726789
Q ss_pred HHHHHHHHH--CCCCEEEEECCCCHH---------HH-HCCEEEEEE
Q ss_conf 999999986--099859998159146---------64-039899994
Q 000909 1168 VVQEALDRI--MMGRTTIVVAHRLNT---------IK-KLDSIALVA 1202 (1230)
Q Consensus 1168 ~i~~~l~~~--~~~~TvI~IaHrl~t---------i~-~~D~I~vl~ 1202 (1230)
.....+... ..++|+++++|.... .. .+|.++.+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 149 RELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 99999999998639716884210255422246762335362999988
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.49 E-value=0.13 Score=24.66 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899948999999941
Q 000909 385 SVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
+++++|++|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.48 E-value=0.14 Score=24.44 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999848999978899998512
Q 000909 1021 TSVGLVGKSGCGKSTVIGLIQRF 1043 (1230)
Q Consensus 1021 e~vaIvG~SGsGKSTL~~lL~rl 1043 (1230)
..|+|+|+.|+|||||++.|.+-
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999998989999999809
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=89.48 E-value=0.16 Score=23.92 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.5
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 83897999984899948999999941
Q 000909 380 VKAGKSVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 380 i~~g~~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
+++|+.+.|.|++|+|||+++.-++-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 62885999991799998999999999
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=89.45 E-value=0.15 Score=24.10 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998489994899999994178
Q 000909 385 SVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
.+||+|+..+|||||++.|.+..
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 79999699854999999998236
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=89.35 E-value=0.17 Score=23.67 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=23.2
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 71893999984899997889999851
Q 000909 1017 VKPGTSVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1017 I~~Ge~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
+++|+.+-|.|++|+||||++.-++-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 62885999991799998999999999
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=89.33 E-value=0.056 Score=27.47 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984899997889999851256
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFYD 1045 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~~ 1045 (1230)
.|||.|.|||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989997809999999999971
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.33 E-value=0.13 Score=24.52 Aligned_cols=21 Identities=43% Similarity=0.676 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899948999999941
Q 000909 385 SVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
+++++|+.|+|||||++-+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.33 E-value=0.13 Score=24.71 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899948999999941
Q 000909 385 SVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
+++++|++|+|||||++-+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799899999999980
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=89.29 E-value=0.14 Score=24.45 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998489999788999985125
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFY 1044 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~ 1044 (1230)
.|||+|+..+|||||++.|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=89.26 E-value=0.13 Score=24.51 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=15.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 7999984899948999999941
Q 000909 384 KSVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 384 ~~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
..++|.|+-||||||.++.+..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999979999889999999998
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=89.20 E-value=0.14 Score=24.40 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899948999999941
Q 000909 385 SVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
+++++|++|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999898999999971
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=89.20 E-value=0.064 Score=27.01 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9399998489999788999985125
Q 000909 1020 GTSVGLVGKSGCGKSTVIGLIQRFY 1044 (1230)
Q Consensus 1020 Ge~vaIvG~SGsGKSTL~~lL~rl~ 1044 (1230)
.-+|+|+|++++|||||++.|.+-.
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9789998899998999999985898
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.20 E-value=0.15 Score=24.06 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999848999978899998512569
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFYDV 1046 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~~~ 1046 (1230)
.+-+.||+|+||||+++++++-+..
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~~ 78 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELGY 78 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 4999879999888999999999875
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.17 E-value=0.2 Score=23.17 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984899948999999941787
Q 000909 385 SVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
++.++|..|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999899299999999972867
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=89.17 E-value=0.17 Score=23.67 Aligned_cols=54 Identities=20% Similarity=0.251 Sum_probs=37.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHHHCCEE
Q ss_conf 97189399998489999788999985125699874-8889940689896888650168
Q 000909 1016 EVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS-VRVDGMDVRELDVHWYRKHTAL 1072 (1230)
Q Consensus 1016 ~I~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~-I~idG~di~~~~~~~lR~~i~~ 1072 (1230)
-+++|..+-|.|++||||||++.-++.-..-..|. ++||... .++.. +-+.+++
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~--~~~~~-~a~~~Gv 104 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH--ALDPI-YARKLGV 104 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHH-HHHHTTC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC--CCCHH-HHHHHCC
T ss_conf 9667358998057774789999999999870898799986544--54899-9998399
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.05 E-value=0.15 Score=24.08 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998489994899999994178
Q 000909 385 SVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
.+.+.|+.||||||+.+.|...|
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999999899999999996
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=89.02 E-value=0.15 Score=24.18 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999848999978899998512
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRF 1043 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl 1043 (1230)
.+||+|..||||||.++.|..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9997898868899999999987
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.96 E-value=0.15 Score=24.16 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984899948999999941787
Q 000909 385 SVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
.+++||...||||||++.|+|.--
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~~ 51 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 699976898979999999968986
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=88.92 E-value=0.15 Score=24.08 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=21.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 18939999848999978899998512
Q 000909 1018 KPGTSVGLVGKSGCGKSTVIGLIQRF 1043 (1230)
Q Consensus 1018 ~~Ge~vaIvG~SGsGKSTL~~lL~rl 1043 (1230)
++.=++.++|+.|||||||++-|.+-
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98579999999998989999999668
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.85 E-value=0.16 Score=23.91 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984899948999999941787
Q 000909 385 SVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
+++++|++|+|||||++-+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989899399999999818856
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.74 E-value=0.15 Score=24.22 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=25.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 897999984899948999999941787998669989
Q 000909 382 AGKSVALVGASGSGKSTAIALVQRFYDADDGIVRID 417 (1230)
Q Consensus 382 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~ 417 (1230)
|...+.++||+|+|||.|++.|...+.. --+.+|
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~~--~~i~~d 84 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALGI--ELLRFD 84 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTC--EEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCC--CEEEEC
T ss_conf 7658999778750069999999863367--706741
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=88.69 E-value=0.26 Score=22.31 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=25.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 939999848999978899998512569987
Q 000909 1020 GTSVGLVGKSGCGKSTVIGLIQRFYDVEQG 1049 (1230)
Q Consensus 1020 Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G 1049 (1230)
...+-|.||.|+||||+++.+.+.+....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 881688898999899999999999754468
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=88.66 E-value=0.17 Score=23.84 Aligned_cols=175 Identities=18% Similarity=0.203 Sum_probs=91.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECCCCCHHHHHHCCEEECCCCC-CCCCCHHHHHC--CCCCCCC
Q ss_conf 999984899997889999851256--998748889940689896888650168702566-78644888862--3999999
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFYD--VEQGSVRVDGMDVRELDVHWYRKHTALVSQEPV-IYAGNIRDNIV--FGKLDAS 1096 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~~--~~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~-LF~gTIreNi~--~~~~~~s 1096 (1230)
.+||+|+.|||||||+..|+..-. ...|++. +|....++...+-.+.+++-+.-.. .+.+ .+-|+- +|..+..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~-~~~n~iDtPGh~dF~ 81 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPLLFRG-HRVFLLDAPGYGDFV 81 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCEEEEEEETT-EEEEEEECCCSGGGH
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEEEEECCCCCCCC-CCEEEECCCCHHHHH
T ss_conf 999994889809999999999709755306622-221135626988873876875102222343-210688068155433
Q ss_pred HHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE---ECCCCCCCHHHHHHHHHHH
Q ss_conf 9899999998230999981202333211599999992599999999997029987786---1666786889799999999
Q 000909 1097 ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILLL---DEATSALDVQSEQVVQEAL 1173 (1230)
Q Consensus 1097 ~~~i~~al~~a~l~~~i~~Lp~Gldt~ige~G~~LSgGQrQrlaLARAll~~~~ILiL---DEaTS~LD~~te~~i~~~l 1173 (1230)
.++..++..+...=+ .| +.......+-++.+-.|+. .+.|.++++ |.+ + |.. +.+ +.+
T Consensus 82 -~e~~~al~~~D~avl----------vv-da~~Gv~~~t~~~~~~~~~-~~~p~~i~iNk~D~~-~--~~~--~~l-~~~ 142 (267)
T d2dy1a2 82 -GEIRGALEAADAALV----------AV-SAEAGVQVGTERAWTVAER-LGLPRMVVVTKLDKG-G--DYY--ALL-EDL 142 (267)
T ss_dssp -HHHHHHHHHCSEEEE----------EE-ETTTCSCHHHHHHHHHHHH-TTCCEEEEEECGGGC-C--CHH--HHH-HHH
T ss_pred -HHHHHHHCCCCCEEE----------EE-ECCCCCCCHHHHHHHHHHH-CCCCCCCCCCCCCCC-C--CCH--HHH-HHH
T ss_conf -556543124673389----------84-2357742115788776554-044310133320222-2--101--234-468
Q ss_pred HHHCCCCEEEEECC----CCHHH-HH-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 98609985999815----91466-40-39899994967988059768951
Q 000909 1174 DRIMMGRTTIVVAH----RLNTI-KK-LDSIALVADGRVVERGTYAQLTH 1217 (1230)
Q Consensus 1174 ~~~~~~~TvI~IaH----rl~ti-~~-~D~I~vl~~G~Ive~Gt~~eL~~ 1217 (1230)
++.+....-+.+-. ....+ .. ..+.+..++|.-.+..-|.++.+
T Consensus 143 ~~~lg~~vp~~~Pi~~~~~f~GvvDl~~~~a~~~~~~~~~~~~ip~~~~~ 192 (267)
T d2dy1a2 143 RSTLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERE 192 (267)
T ss_dssp HHHHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHH
T ss_pred HHHHCCCCCEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEECCHHHHH
T ss_conf 88746586768600258832687624765489961898745407777899
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=88.65 E-value=0.22 Score=22.89 Aligned_cols=30 Identities=23% Similarity=0.164 Sum_probs=19.5
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 838979999848999489999999417879
Q 000909 380 VKAGKSVALVGASGSGKSTAIALVQRFYDA 409 (1230)
Q Consensus 380 i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~ 409 (1230)
.+||..+++.|+-||||||+++.+.+-+..
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 799829999668776588999998764223
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=88.62 E-value=0.14 Score=24.28 Aligned_cols=34 Identities=26% Similarity=0.296 Sum_probs=21.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEC
Q ss_conf 999848999978899998512569987488899406
Q 000909 1023 VGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDGMDV 1058 (1230)
Q Consensus 1023 vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG~di 1058 (1230)
+-+.||.|+||||+++++..-+.... +.++|.+.
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~~--~~~~~~~~ 71 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTNI--HVTSGPVL 71 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCCE--EEEETTTC
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC--CCCCCCCC
T ss_conf 89879999738899999985038885--33257442
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=88.62 E-value=0.19 Score=23.36 Aligned_cols=32 Identities=22% Similarity=0.197 Sum_probs=28.0
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 97189399998489999788999985125699
Q 000909 1016 EVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVE 1047 (1230)
Q Consensus 1016 ~I~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~ 1047 (1230)
..+||..+.+.|+=||||||+++.+.+-+...
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~ 60 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ 60 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 57998299996687765889999987642234
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.60 E-value=0.16 Score=23.93 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899948999999941
Q 000909 385 SVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
+++++|++|+|||||++-+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899399999999971
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.51 E-value=0.17 Score=23.82 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999848999489999999417
Q 000909 385 SVALVGASGSGKSTAIALVQRF 406 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~ 406 (1230)
+++++|++|+|||||++-+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.50 E-value=0.32 Score=21.65 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899997889999851
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
|+.++|.+|+|||||++-+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899399999999971
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.45 E-value=0.14 Score=24.38 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=24.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9999848999978899998512569987488899
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDG 1055 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG 1055 (1230)
++.|.||-||||||+++.|..-| |-..|+.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~----g~~~i~~ 33 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF----HAAHLAT 33 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEEEC
T ss_conf 99998999999899999999996----9945834
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.44 E-value=0.23 Score=22.68 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=26.0
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 4998389799998489994899999994178
Q 000909 377 NLKVKAGKSVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 377 ~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
-+.+-+|++.+|.|++|+|||+|+.-+..-.
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~~~~ 92 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELINNV 92 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 2563678877766799989899999999988
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=88.44 E-value=0.36 Score=21.21 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=25.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99998489994899999994178799866998
Q 000909 385 SVALVGASGSGKSTAIALVQRFYDADDGIVRI 416 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~ 416 (1230)
++.|=|+-||||||+++.|...+....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99998886678999999999986569976998
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.43 E-value=0.34 Score=21.40 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899948999999941
Q 000909 385 SVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
++.++|.+|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999970
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.41 E-value=0.36 Score=21.25 Aligned_cols=21 Identities=24% Similarity=0.533 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899997889999851
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
|+.+||.+|+|||||++-+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899789999999973
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.38 E-value=0.17 Score=23.72 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984899948999999941787
Q 000909 385 SVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
+++|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=88.36 E-value=0.45 Score=20.52 Aligned_cols=41 Identities=20% Similarity=0.278 Sum_probs=32.0
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCE
Q ss_conf 98389799998489994899999994178799866-998996
Q 000909 379 KVKAGKSVALVGASGSGKSTAIALVQRFYDADDGI-VRIDGV 419 (1230)
Q Consensus 379 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~-i~~~g~ 419 (1230)
-++.|..+-+.|++||||||++..++...+...|. +++|..
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE 94 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 94 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 866754789805876522799999999997079989999887
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.33 E-value=0.17 Score=23.67 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899948999999941
Q 000909 385 SVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
+++++|.+|+|||||++-+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999974
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=88.31 E-value=0.37 Score=21.13 Aligned_cols=37 Identities=30% Similarity=0.419 Sum_probs=25.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHC-----CCCCCCCE-----EEECCEE
Q ss_conf 3999984899997889999851-----25699874-----8889940
Q 000909 1021 TSVGLVGKSGCGKSTVIGLIQR-----FYDVEQGS-----VRVDGMD 1057 (1230)
Q Consensus 1021 e~vaIvG~SGsGKSTL~~lL~r-----l~~~~~G~-----I~idG~d 1057 (1230)
-|+.++|.+|+|||||++-+.. -|.|+.|. +.+||.+
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~ 51 (168)
T d1u8za_ 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE 51 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 69999998995889999999729998654775343101111345433
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.30 E-value=0.18 Score=23.61 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899997889999851
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
|+.++|.+|+|||||++-+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999973
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=88.26 E-value=0.17 Score=23.71 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984899948999999941787
Q 000909 385 SVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
.+++||..+||||||++.|+|.--
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~ 49 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred EEEEEECCCCCHHHHHHHHHCCCC
T ss_conf 599981898979999999968997
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.21 E-value=0.2 Score=23.21 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=22.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 189399998489999788999985125
Q 000909 1018 KPGTSVGLVGKSGCGKSTVIGLIQRFY 1044 (1230)
Q Consensus 1018 ~~Ge~vaIvG~SGsGKSTL~~lL~rl~ 1044 (1230)
..+..+.|.||+|+|||||++-+++-.
T Consensus 27 ~~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 27 LRAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp TCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 059879998699982999999999977
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.18 E-value=0.17 Score=23.76 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899948999999941
Q 000909 385 SVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
+++++|.+|+|||||++-+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999678999999986
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=88.16 E-value=0.15 Score=24.08 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=23.1
Q ss_pred CCEEEEECCCCCCHHHHHHH-HHCCCCCCCCEEEEC
Q ss_conf 97999984899948999999-941787998669989
Q 000909 383 GKSVALVGASGSGKSTAIAL-VQRFYDADDGIVRID 417 (1230)
Q Consensus 383 g~~~~ivG~sGsGKSTl~~l-l~~~~~~~~G~i~~~ 417 (1230)
...+.|+|++|||||++++. +...+....+-|.+|
T Consensus 50 ~~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD 85 (433)
T d1e9ra_ 50 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD 85 (433)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 265899907999689999999999984799889996
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.16 E-value=0.16 Score=23.89 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984899948999999941787
Q 000909 385 SVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
.+.+.||+|+||||++++++..+.
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 699978999748799999999987
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.14 E-value=0.17 Score=23.72 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899948999999941
Q 000909 385 SVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
+++++|++|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.12 E-value=0.16 Score=23.87 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998489994899999994178
Q 000909 386 VALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 386 ~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
+.+.||+|+||||+++++++.+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.05 E-value=0.16 Score=23.86 Aligned_cols=47 Identities=21% Similarity=0.289 Sum_probs=29.6
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH
Q ss_conf 299877861666786889799999999986099859998159146640
Q 000909 1147 RNPTILLLDEATSALDVQSEQVVQEALDRIMMGRTTIVVAHRLNTIKK 1194 (1230)
Q Consensus 1147 ~~~~ILiLDEaTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~ 1194 (1230)
.++.++++||.- .+.......+...+.........|.++++.+.+..
T Consensus 108 ~~~~iilide~d-~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~ 154 (231)
T d1iqpa2 108 ASFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIE 154 (231)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCH
T ss_pred CCCEEEEEHHHH-HCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHCHH
T ss_conf 872288614344-31214789876411247764478861487665657
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.04 E-value=0.35 Score=21.29 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899997889999851
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
|+.++|++|+|||||++-+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999984
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.02 E-value=0.4 Score=20.87 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899948999999941
Q 000909 385 SVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
+++++|..|+|||||++-+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899098999999984
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=87.98 E-value=0.19 Score=23.39 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9799998489994899999994178
Q 000909 383 GKSVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 383 g~~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
.-.++|.|+.|+|||||+..+...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 1598611799888999999999987
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=87.93 E-value=0.32 Score=21.65 Aligned_cols=33 Identities=24% Similarity=0.234 Sum_probs=24.2
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3111027971893999984899997889999851
Q 000909 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1009 vL~~isl~I~~Ge~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
.++.--+ --.|.-+.|+|+||+||||++..|..
T Consensus 4 ~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLV-DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEE-EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEEE-EECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 2899999-99999999980899998999999998
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.88 E-value=0.19 Score=23.32 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999848999489999999417
Q 000909 385 SVALVGASGSGKSTAIALVQRF 406 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~ 406 (1230)
.+||||...+|||||++.|.|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred CEEEECCCCCCHHHHHHHHHCC
T ss_conf 1768899999899999999788
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.84 E-value=0.2 Score=23.25 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999848999978899998512569
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFYDV 1046 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~~~ 1046 (1230)
.|+|-|.-||||||+++.|...+..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~~ 26 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999899878999999999999987
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.68 E-value=0.24 Score=22.53 Aligned_cols=29 Identities=31% Similarity=0.366 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHH-HCCCCCCCC
Q ss_conf 79999848999489999999-417879986
Q 000909 384 KSVALVGASGSGKSTAIALV-QRFYDADDG 412 (1230)
Q Consensus 384 ~~~~ivG~sGsGKSTl~~ll-~~~~~~~~G 412 (1230)
-++.++|.+|+|||||++-+ .+.+.|+-|
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 779999899998899999895098278888
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.61 E-value=0.28 Score=22.10 Aligned_cols=21 Identities=43% Similarity=0.702 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899997889999851
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
|++++|+.|+|||||++-+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.60 E-value=0.29 Score=21.94 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899997889999851
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
|++++|++|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.59 E-value=0.28 Score=22.10 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899997889999851
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
|++++|++|+|||||++-+..
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799899999999980
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=87.56 E-value=0.21 Score=23.04 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998489999788999985125
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFY 1044 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~ 1044 (1230)
.|||+|+..+|||||++.|++-.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 79999699854999999998236
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=87.51 E-value=0.25 Score=22.50 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984899997889999851256
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFYD 1045 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~~ 1045 (1230)
-+-+.||.|+|||++++.+.+-+.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 488766898883599999998739
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.49 E-value=0.21 Score=23.03 Aligned_cols=21 Identities=29% Similarity=0.533 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899997889999851
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
|++++|.+|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.49 E-value=0.3 Score=21.87 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998489999788999985125
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFY 1044 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~ 1044 (1230)
.+++||...|||||++++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.46 E-value=0.47 Score=20.35 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899948999999941
Q 000909 385 SVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
+++++|.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.45 E-value=0.46 Score=20.42 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=22.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 3999984899997889999851-----2569987
Q 000909 1021 TSVGLVGKSGCGKSTVIGLIQR-----FYDVEQG 1049 (1230)
Q Consensus 1021 e~vaIvG~SGsGKSTL~~lL~r-----l~~~~~G 1049 (1230)
=++.++|.+|+|||||++-+.. -|+|+.|
T Consensus 5 ~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~ 38 (169)
T d1x1ra1 5 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE 38 (169)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 7999999899598999999970988854576312
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=87.42 E-value=0.16 Score=23.96 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984899948999999941787
Q 000909 385 SVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
.+.+.||+|+||||+++++.+.+.
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 389889799878889999999849
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.35 E-value=0.21 Score=22.98 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHH-CCC
Q ss_conf 99998489994899999994-178
Q 000909 385 SVALVGASGSGKSTAIALVQ-RFY 407 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~-~~~ 407 (1230)
+++++|..|+|||||++-+. +.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~~~ 27 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAGRF 27 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999999298999999973999
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.33 E-value=0.2 Score=23.13 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=18.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 79999848999489999999417
Q 000909 384 KSVALVGASGSGKSTAIALVQRF 406 (1230)
Q Consensus 384 ~~~~ivG~sGsGKSTl~~ll~~~ 406 (1230)
.++.++|++|+|||||++-+.+-
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998993889999999719
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.32 E-value=0.22 Score=22.95 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899997889999851
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
|++++|.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.31 E-value=0.38 Score=21.04 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHH-HCC
Q ss_conf 9999848999489999999-417
Q 000909 385 SVALVGASGSGKSTAIALV-QRF 406 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll-~~~ 406 (1230)
++.++|.+|+|||||++-+ .+.
T Consensus 4 KivliG~~~vGKTsli~r~~~~~ 26 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKDC 26 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999959899999997299
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.31 E-value=0.3 Score=21.80 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998489999788999985125
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFY 1044 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~ 1044 (1230)
++++||...|||||++++|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=87.30 E-value=0.14 Score=24.35 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=18.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 97999984899948999999941
Q 000909 383 GKSVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 383 g~~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
.=+++++|++|+|||||++-+.+
T Consensus 17 ~~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 17 ELRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHC
T ss_conf 68999999999988999988733
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=87.28 E-value=0.2 Score=23.25 Aligned_cols=25 Identities=32% Similarity=0.305 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999984899948999999941787
Q 000909 384 KSVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 384 ~~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
..+.+.||+|||||++++.+.....
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 0799889699988999999862010
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.25 E-value=0.48 Score=20.28 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=18.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999984899997889999851
Q 000909 1021 TSVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1021 e~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
=+++++|.+|+|||||++-+..
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999999899789999999971
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.24 E-value=0.21 Score=23.06 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899997889999851
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
|+.++|..|+|||||++-+..
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899098999999984
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.19 E-value=0.32 Score=21.60 Aligned_cols=28 Identities=36% Similarity=0.443 Sum_probs=17.2
Q ss_pred EEEEECCCCCCHHHHHHHH--HCCCCCCCC
Q ss_conf 9999848999489999999--417879986
Q 000909 385 SVALVGASGSGKSTAIALV--QRFYDADDG 412 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll--~~~~~~~~G 412 (1230)
++.++|.+|+|||||++-+ ...+.||-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf 999998999998999998846898887241
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.17 E-value=0.2 Score=23.13 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998489999788999985125
Q 000909 1023 VGLVGKSGCGKSTVIGLIQRFY 1044 (1230)
Q Consensus 1023 vaIvG~SGsGKSTL~~lL~rl~ 1044 (1230)
+-+.||+|+||||+++++.+-+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=87.15 E-value=0.21 Score=23.05 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999984899997889999851
Q 000909 1021 TSVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1021 e~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
=+++++|+.|+|||||++-+.+
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 7999999999899999999964
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.14 E-value=0.21 Score=23.08 Aligned_cols=26 Identities=27% Similarity=0.185 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89799998489994899999994178
Q 000909 382 AGKSVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 382 ~g~~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
|=..++|+|+.++|||||++.+.|..
T Consensus 31 ~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 31 PMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 87999988999997999999980998
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.12 E-value=0.24 Score=22.54 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899997889999851
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
|+.++|++|+|||||++-+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999961
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.11 E-value=0.3 Score=21.84 Aligned_cols=39 Identities=21% Similarity=0.372 Sum_probs=27.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHC-----CCCCCCCE-----EEECCEEC
Q ss_conf 93999984899997889999851-----25699874-----88899406
Q 000909 1020 GTSVGLVGKSGCGKSTVIGLIQR-----FYDVEQGS-----VRVDGMDV 1058 (1230)
Q Consensus 1020 Ge~vaIvG~SGsGKSTL~~lL~r-----l~~~~~G~-----I~idG~di 1058 (1230)
.-||+++|++|+|||||++-+.. -|.|+.|. +.+||.++
T Consensus 4 ~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~ 52 (167)
T d1xtqa1 4 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEY 52 (167)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCEEEECCCEEE
T ss_conf 3389999989929899999997198885447542113103883176798
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.00 E-value=0.22 Score=22.90 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899948999999941
Q 000909 385 SVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
+++++|+.|+|||||++-+..
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999961
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.99 E-value=0.45 Score=20.47 Aligned_cols=28 Identities=25% Similarity=0.487 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC-C----CCCCCC
Q ss_conf 999984899997889999851-2----569987
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQR-F----YDVEQG 1049 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~r-l----~~~~~G 1049 (1230)
|+.++|.+|+|||||++-+.. - |.|+-|
T Consensus 4 KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~ 36 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 999999999598999999972999986587201
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=86.96 E-value=0.2 Score=23.21 Aligned_cols=19 Identities=47% Similarity=0.770 Sum_probs=7.0
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998489999788999985
Q 000909 1023 VGLVGKSGCGKSTVIGLIQ 1041 (1230)
Q Consensus 1023 vaIvG~SGsGKSTL~~lL~ 1041 (1230)
+||.|+=|+|||||+..|.
T Consensus 54 igitG~pGaGKSTli~~l~ 72 (323)
T d2qm8a1 54 VGITGVPGVGKSTTIDALG 72 (323)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 8611799888999999999
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=86.92 E-value=0.53 Score=19.92 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 939999848999978899998512569
Q 000909 1020 GTSVGLVGKSGCGKSTVIGLIQRFYDV 1046 (1230)
Q Consensus 1020 Ge~vaIvG~SGsGKSTL~~lL~rl~~~ 1046 (1230)
...+.+|||+|+||||.+.=|...+.-
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~ 36 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYKG 36 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 868999899999889999999999997
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.88 E-value=0.22 Score=22.86 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899948999999941
Q 000909 385 SVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
+++++|..|+|||||++-+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.76 E-value=0.41 Score=20.81 Aligned_cols=28 Identities=36% Similarity=0.517 Sum_probs=14.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9999848999489999999417879986
Q 000909 385 SVALVGASGSGKSTAIALVQRFYDADDG 412 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G 412 (1230)
++.++|..|+|||||++-+.....|+.|
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~ 31 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTG 31 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 9999999998889999988408979724
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.71 E-value=0.25 Score=22.50 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899948999999941
Q 000909 385 SVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
+++++|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999972
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.63 E-value=0.25 Score=22.41 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899948999999941
Q 000909 385 SVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
+++++|.+|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999398999999982
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.56 E-value=0.35 Score=21.36 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984899997889999851256
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFYD 1045 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~~ 1045 (1230)
|+.++|.+|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999899299999999972867
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.56 E-value=0.35 Score=21.38 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899997889999851
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
|+.+||++|+|||||++-+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999399999999962
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.47 E-value=0.35 Score=21.33 Aligned_cols=21 Identities=24% Similarity=0.589 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899997889999851
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
|+.++|.+|+|||||++-+..
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.46 E-value=0.24 Score=22.54 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899948999999941
Q 000909 385 SVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
+++++|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=86.46 E-value=0.24 Score=22.55 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=23.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 3999984899997889999851256998748889
Q 000909 1021 TSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVD 1054 (1230)
Q Consensus 1021 e~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~id 1054 (1230)
..+||.|.-||||||+++.|..-| |-..+|
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~~----g~~~i~ 31 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSNY----SAVKYQ 31 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS----CEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC----CCEEEC
T ss_conf 899997999988999999999868----985980
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=86.39 E-value=0.27 Score=22.25 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899997889999851
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
++.++|++|+|||||++-+..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999898999999971
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.38 E-value=0.28 Score=22.06 Aligned_cols=24 Identities=33% Similarity=0.482 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984899997889999851256
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFYD 1045 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~~ 1045 (1230)
|++++|.+|+|||||++-+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989899399999999818856
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.37 E-value=0.26 Score=22.28 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899948999999941
Q 000909 385 SVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
+++++|..|+|||||++-+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899088999999971
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.36 E-value=0.056 Score=27.45 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999848999978899998512
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRF 1043 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl 1043 (1230)
+++++|++|+|||||++.|.|-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=86.33 E-value=0.22 Score=22.82 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=18.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998489999788999985125
Q 000909 1021 TSVGLVGKSGCGKSTVIGLIQRFY 1044 (1230)
Q Consensus 1021 e~vaIvG~SGsGKSTL~~lL~rl~ 1044 (1230)
..+-+.||.|||||++++.+.+-.
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 079988969998899999986201
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=86.21 E-value=0.24 Score=22.53 Aligned_cols=31 Identities=29% Similarity=0.483 Sum_probs=23.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 999848999489999999417879986699899
Q 000909 386 VALVGASGSGKSTAIALVQRFYDADDGIVRIDG 418 (1230)
Q Consensus 386 ~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 418 (1230)
+..+||||+|||-|++.|..+++. .-+.+|-
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~~~--~~ir~D~ 101 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHLDI--PIAISDA 101 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC--CEEEEEG
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC--CEEEHHH
T ss_conf 244189986378999999864435--3311122
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=86.19 E-value=0.54 Score=19.89 Aligned_cols=15 Identities=20% Similarity=0.332 Sum_probs=7.2
Q ss_pred HHHHCCCHHHHHHHH
Q ss_conf 873028278999998
Q 000909 578 LINRIDGHYAKMAKL 592 (1230)
Q Consensus 578 l~~~~~~~~~~~~~~ 592 (1230)
.++..+..|..+++.
T Consensus 188 YL~~L~~~Y~~l~nT 202 (333)
T d1p6xa_ 188 LIATLRNVYFMLVNT 202 (333)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999829
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=86.17 E-value=0.44 Score=20.61 Aligned_cols=33 Identities=27% Similarity=0.263 Sum_probs=24.5
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3111027971893999984899997889999851
Q 000909 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1009 vL~~isl~I~~Ge~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
.++. ++-.-.|.-+.|.|+||+||||++..|.+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 4889-99999999999980899999999999998
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.12 E-value=0.25 Score=22.47 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=29.5
Q ss_pred EEEEECCCCCCHHHHHHHHH---CCCCCCCCEEEECCEECCCCCHHHHHHHEE
Q ss_conf 99998489994899999994---178799866998996269888888750107
Q 000909 385 SVALVGASGSGKSTAIALVQ---RFYDADDGIVRIDGVDIRRLQLKWVRREMG 434 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~---~~~~~~~G~i~~~g~~i~~~~~~~~r~~i~ 434 (1230)
.++|+|+.|||||||+..|+ |..+ ..|++. +|..+.++.+....++++
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~~~~~~D~~~~E~~r~~s 58 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH-KIGEVH-EGAATMDFMEQERERGIT 58 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC-C--------------------CCCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCC-CCCCEE-CCCEEEECCHHHHHCCCC
T ss_conf 999995898998999999999648534-023365-184698565888751886
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.11 E-value=0.28 Score=22.05 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=22.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 979999848999489999999417879
Q 000909 383 GKSVALVGASGSGKSTAIALVQRFYDA 409 (1230)
Q Consensus 383 g~~~~ivG~sGsGKSTl~~ll~~~~~~ 409 (1230)
-.-+.+.||+|+|||++++.+.+....
T Consensus 38 ~~giLL~GppGtGKT~l~~ala~~~~~ 64 (258)
T d1e32a2 38 PRGILLYGPPGTGKTLIARAVANETGA 64 (258)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 864687669988830899999987488
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=85.99 E-value=0.26 Score=22.36 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 799998489994899999994178
Q 000909 384 KSVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 384 ~~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
=+++|||...+|||||++.+.+--
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 379997899998999999997789
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.97 E-value=0.28 Score=22.04 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998489994899999994
Q 000909 385 SVALVGASGSGKSTAIALVQ 404 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~ 404 (1230)
+++++|..|+|||||++-+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~ 27 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999949899999998
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.94 E-value=0.37 Score=21.12 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=27.4
Q ss_pred CCEEEEECCCCCCHHHHHHHH-HCCCCCCCCE----EEECCEECC
Q ss_conf 939999848999978899998-5125699874----888994068
Q 000909 1020 GTSVGLVGKSGCGKSTVIGLI-QRFYDVEQGS----VRVDGMDVR 1059 (1230)
Q Consensus 1020 Ge~vaIvG~SGsGKSTL~~lL-~rl~~~~~G~----I~idG~di~ 1059 (1230)
--|+-++|.+|+|||||++-+ .+-+.|+-|- +.++++.+.
T Consensus 6 ~~KilllG~~~vGKTsll~~~~~~~~~pTiG~~~~~~~~~~~~~~ 50 (221)
T d1azta2 6 THRLLLLGAGESGKSTIVKQMRILHVVLTSGIFETKFQVDKVNFH 50 (221)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHCCCCCSCEEEEEEETTEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEEEECCEEEE
T ss_conf 477999989999889999989509827888867899997769999
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=85.89 E-value=0.18 Score=23.47 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 79999848999489999999417
Q 000909 384 KSVALVGASGSGKSTAIALVQRF 406 (1230)
Q Consensus 384 ~~~~ivG~sGsGKSTl~~ll~~~ 406 (1230)
=+++|||-..+|||||++.+.+-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 34888899999889999999779
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.87 E-value=0.29 Score=21.98 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHH-HCCC
Q ss_conf 9999848999489999999-4178
Q 000909 385 SVALVGASGSGKSTAIALV-QRFY 407 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll-~~~~ 407 (1230)
+++++|+.|+|||||++-+ .+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~~~~ 31 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKDGAF 31 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999999299999999971998
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.86 E-value=0.37 Score=21.16 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899997889999851
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
|+.++|.+|+|||||++-+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999678999999986
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=85.84 E-value=0.26 Score=22.28 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=14.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99984899997889999851256
Q 000909 1023 VGLVGKSGCGKSTVIGLIQRFYD 1045 (1230)
Q Consensus 1023 vaIvG~SGsGKSTL~~lL~rl~~ 1045 (1230)
+-+.||.|+||||+++++.+-+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89889799878889999999849
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=85.69 E-value=0.22 Score=22.92 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=26.3
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 838979999848999489999999417879
Q 000909 380 VKAGKSVALVGASGSGKSTAIALVQRFYDA 409 (1230)
Q Consensus 380 i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~ 409 (1230)
++++..+.+.||.|+|||++++.++++...
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~ 180 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALLELCGG 180 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 997676999899998889999999998599
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.60 E-value=0.27 Score=22.17 Aligned_cols=75 Identities=19% Similarity=0.284 Sum_probs=49.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHHCCCCCC
Q ss_conf 97189399998489999788999985125699874-88899406898968886501687025667864488886239999
Q 000909 1016 EVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGS-VRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNIVFGKLD 1094 (1230)
Q Consensus 1016 ~I~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~-I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNi~~~~~~ 1094 (1230)
-++.|..+-+.|++||||||++.-+..-..-..|. |+||... .++++.++ ++++=+ +|+.+..++
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a~-~~GvD~-----------d~il~~~~~ 121 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYAK-KLGVDT-----------DSLLVSQPD 121 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHHH-HHTCCG-----------GGCEEECCS
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC--CCCHHHHH-HHCCCH-----------HHEEEECCC
T ss_conf 8666336999648874889999999998754898899998976--67999999-809988-----------995896699
Q ss_pred CCHHHHHHHHH
Q ss_conf 99989999999
Q 000909 1095 ASENEVVEAAR 1105 (1230)
Q Consensus 1095 ~s~~~i~~al~ 1105 (1230)
+.|++.+.++
T Consensus 122 -~~E~~~~~~~ 131 (269)
T d1mo6a1 122 -TGEQALEIAD 131 (269)
T ss_dssp -SHHHHHHHHH
T ss_pred -CHHHHHHHHH
T ss_conf -8999999999
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=85.50 E-value=0.3 Score=21.88 Aligned_cols=54 Identities=20% Similarity=0.253 Sum_probs=39.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEECCCCCHHHHHHCCEE
Q ss_conf 9718939999848999978899998512569987-48889940689896888650168
Q 000909 1016 EVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQG-SVRVDGMDVRELDVHWYRKHTAL 1072 (1230)
Q Consensus 1016 ~I~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G-~I~idG~di~~~~~~~lR~~i~~ 1072 (1230)
-++.|..+-|.|++||||||++..++.-..-..| -++||... .++++ +.+++++
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~--~~~~~-~a~~~Gv 107 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH--ALDPV-YARALGV 107 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHH-HHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC--CCCHH-HHHHHCC
T ss_conf 8667547898058765227999999999970799899998876--58999-9998289
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.49 E-value=0.29 Score=21.97 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=22.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999984899948999999941787
Q 000909 384 KSVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 384 ~~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
+.++|-|.-||||||+++.|...+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1999989988859999999999873
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.47 E-value=0.19 Score=23.46 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899948999999941
Q 000909 385 SVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
+++++|++|+|||||++-+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999088999999984
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.45 E-value=0.31 Score=21.78 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899948999999941
Q 000909 385 SVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
+++++|.+|+|||||++-+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999899999999964
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.45 E-value=0.32 Score=21.68 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899997889999851
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
|+.++|.+|+|||||++-+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999974
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.37 E-value=0.45 Score=20.50 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899997889999851
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
|+.++|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999972
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.35 E-value=0.48 Score=20.25 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=23.4
Q ss_pred CEEEEECCCCCCHHHHHHHHH--CCCCCCCCE
Q ss_conf 399998489999788999985--125699874
Q 000909 1021 TSVGLVGKSGCGKSTVIGLIQ--RFYDVEQGS 1050 (1230)
Q Consensus 1021 e~vaIvG~SGsGKSTL~~lL~--rl~~~~~G~ 1050 (1230)
=|+.++|.+|+|||||++-+. .-+.|+-|-
T Consensus 3 iKivllG~~~vGKTsll~r~~f~~~~~pTiG~ 34 (200)
T d1zcba2 3 VKILLLGAGESGKSTFLKQMRIIHGQDPTKGI 34 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHSCCCCSSE
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCEEEE
T ss_conf 89999989999989999988468988872414
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.33 E-value=0.23 Score=22.74 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=28.6
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
Q ss_conf 998899837778999797999999999842997399982292023
Q 000909 511 NPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTV 555 (1230)
Q Consensus 511 ~~~ililDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~ith~~~~~ 555 (1230)
+..++++||.-.- .......+...+......+..+++++..+.+
T Consensus 101 ~~kviiiDe~d~~-~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEADSM-TAGAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGGGS-CHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CEEEEEEECCCCC-CHHHHHHHHHHCCCCCCCEEEEECCCCHHHH
T ss_conf 3599998244323-2157787752011233333665314743021
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.29 E-value=0.18 Score=23.58 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899948999999941
Q 000909 385 SVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
+++++|..|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999499999999970
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.25 E-value=0.43 Score=20.63 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=19.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999848999978899998512
Q 000909 1021 TSVGLVGKSGCGKSTVIGLIQRF 1043 (1230)
Q Consensus 1021 e~vaIvG~SGsGKSTL~~lL~rl 1043 (1230)
-|+.++|.+|+|||||++-+..-
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998993889999999719
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=85.22 E-value=0.22 Score=22.90 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=28.8
Q ss_pred CEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1027971893999984899997889999851256
Q 000909 1012 QFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFYD 1045 (1230)
Q Consensus 1012 ~isl~I~~Ge~vaIvG~SGsGKSTL~~lL~rl~~ 1045 (1230)
|.=+.|-+|++.+|+|++|+|||||+..+.+-..
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4125645787556867999887899999999775
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.18 E-value=0.47 Score=20.38 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899997889999851
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
|+.++|..|+|||||++-+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899088999999971
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=85.03 E-value=0.31 Score=21.79 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=31.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEEC
Q ss_conf 971893999984899997889999851256998748-8899406
Q 000909 1016 EVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEQGSV-RVDGMDV 1058 (1230)
Q Consensus 1016 ~I~~Ge~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I-~idG~di 1058 (1230)
.++++..+.+.||.|+|||++++.|+++.. |.+ .+++-+.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s~~ 190 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLPLD 190 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSCTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEECCCH
T ss_conf 899767699989999888999999999859---97899977420
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.01 E-value=0.28 Score=22.13 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=22.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999848999978899998512569
Q 000909 1021 TSVGLVGKSGCGKSTVIGLIQRFYDV 1046 (1230)
Q Consensus 1021 e~vaIvG~SGsGKSTL~~lL~rl~~~ 1046 (1230)
..++|-|.-||||||++++|..-+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=84.93 E-value=0.42 Score=20.77 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984899948999999941787
Q 000909 385 SVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
...++||+|+|||.+++.|...+.
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l~ 78 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATLF 78 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 999978886248999999999835
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.86 E-value=0.46 Score=20.44 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899997889999851
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
|++++|+.|+|||||++-+..
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999961
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=84.80 E-value=0.15 Score=24.21 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=28.5
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 4013049983897999984899948999999941787998
Q 000909 372 VLKDFNLKVKAGKSVALVGASGSGKSTAIALVQRFYDADD 411 (1230)
Q Consensus 372 ~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~ 411 (1230)
+++. =+.+-+|++.+|.|++|+|||+|+..+........
T Consensus 57 ~ID~-l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~ 95 (276)
T d1fx0a3 57 AIDA-MIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQN 95 (276)
T ss_dssp TTTT-TSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTT
T ss_pred EEEC-CCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 7750-14546776676006778885799999776540467
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.80 E-value=0.38 Score=21.02 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=9.9
Q ss_pred HHHHCCCCCEEEEECCCCCC
Q ss_conf 99860299889983777899
Q 000909 505 ARAIIKNPVILLLDEATSAL 524 (1230)
Q Consensus 505 ARal~~~~~ililDe~ts~l 524 (1230)
..|-...|.|+++||.-+-.
T Consensus 91 ~~A~~~~p~il~iDeid~l~ 110 (258)
T d1e32a2 91 EEAEKNAPAIIFIDELDAIA 110 (258)
T ss_dssp HHHHHTCSEEEEESSGGGTC
T ss_pred HHHHHCCCEEEEEHHHHHHC
T ss_conf 99986499499852111322
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=84.78 E-value=0.39 Score=20.96 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=24.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 999984899948999999941787998669
Q 000909 385 SVALVGASGSGKSTAIALVQRFYDADDGIV 414 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i 414 (1230)
.++|=|+-||||||+++.|...+......+
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v 36 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRI 36 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTSGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 999988877889999999999873468856
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.69 E-value=0.47 Score=20.32 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899997889999851
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
|+.++|..|+|||||++-+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.56 E-value=0.36 Score=21.21 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899997889999851
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
|+.++|.+|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999298999999973
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.55 E-value=0.52 Score=20.03 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHH-CC----CCCCCC
Q ss_conf 99998489999788999985-12----569987
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQ-RF----YDVEQG 1049 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~-rl----~~~~~G 1049 (1230)
|++++|..|+|||||++-+. +- |+|+.|
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~ 37 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG 37 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 999999999198999999972999865465301
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.53 E-value=0.52 Score=20.02 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899997889999851
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
|+.++|.+|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999985
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=84.44 E-value=0.4 Score=20.89 Aligned_cols=26 Identities=27% Similarity=0.186 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89799998489994899999994178
Q 000909 382 AGKSVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 382 ~g~~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
....++|+|..|.|||||++.+....
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~~~ 68 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALSKS 68 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 84089997799788899999999855
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.41 E-value=0.37 Score=21.12 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 999984899997889999851-----2569987
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQR-----FYDVEQG 1049 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~r-----l~~~~~G 1049 (1230)
|+.++|.+|+|||||++-+.. -|.|+.|
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~ 37 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLG 37 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 999999999398999999982998864454200
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.38 E-value=0.35 Score=21.33 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHH-HCCC
Q ss_conf 9999848999489999999-4178
Q 000909 385 SVALVGASGSGKSTAIALV-QRFY 407 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll-~~~~ 407 (1230)
+++++|++|+|||||++-+ .+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~~~f 28 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTNKF 28 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999999699999999971999
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=84.31 E-value=0.7 Score=19.03 Aligned_cols=44 Identities=7% Similarity=0.169 Sum_probs=28.3
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
Q ss_conf 998899837778999797999999999842997399982292023
Q 000909 511 NPVILLLDEATSALDSESETLVQNALDQASLGRTTLVVAHKLSTV 555 (1230)
Q Consensus 511 ~~~ililDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~ith~~~~~ 555 (1230)
+.+|+++||+-. +...+...+.+.+.+-..+...|++|++.+.+
T Consensus 108 ~~kviIide~d~-l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~l 151 (207)
T d1a5ta2 108 GAKVVWVTDAAL-LTDAAANALLKTLEEPPAETWFFLATREPERL 151 (207)
T ss_dssp SCEEEEESCGGG-BCHHHHHHHHHHHTSCCTTEEEEEEESCGGGS
T ss_pred CCCEEEECHHHH-HHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
T ss_conf 640477313442-00001499999998501111045530686551
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.27 E-value=0.36 Score=21.25 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=25.7
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 311102797189399998489999788999985125
Q 000909 1009 VLRQFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRFY 1044 (1230)
Q Consensus 1009 vL~~isl~I~~Ge~vaIvG~SGsGKSTL~~lL~rl~ 1044 (1230)
+|++++ .|=..|+|+|+.++|||||++.|++-.
T Consensus 24 ~l~~~~---~~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 24 ILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHCCC---CCEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 997079---987999988999997999999980998
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.26 E-value=0.38 Score=21.06 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899948999999941
Q 000909 385 SVALVGASGSGKSTAIALVQR 405 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~ 405 (1230)
++++||.+|+|||||++-+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999899899999999970
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.12 E-value=0.35 Score=21.30 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998489994899999994178
Q 000909 386 VALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 386 ~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
+.+.||+|+||||+++++.+.+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHH
T ss_conf 9998899987054699999997
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=83.96 E-value=0.48 Score=20.30 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=13.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998489994899999994178
Q 000909 386 VALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 386 ~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
+|++|...+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999345884999999997034
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.90 E-value=0.38 Score=21.03 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899997889999851
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
|++++|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=83.67 E-value=0.41 Score=20.84 Aligned_cols=24 Identities=25% Similarity=0.563 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984899997889999851256
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFYD 1045 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~~ 1045 (1230)
.+||+|.-.+|||||++.|.+...
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999993458849999999970344
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=83.64 E-value=0.42 Score=20.69 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=15.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999848999978899998512
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRF 1043 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl 1043 (1230)
+|||||...+|||||+++|.+-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred CEEEECCCCCCHHHHHHHHHCC
T ss_conf 1768899999899999999788
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=83.40 E-value=0.3 Score=21.82 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=19.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 799998489994899999994178
Q 000909 384 KSVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 384 ~~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
=++.++|++|+|||||++-+.+-.
T Consensus 13 ~kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 13 MRILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799999999987899999984488
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=83.17 E-value=0.28 Score=22.12 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=20.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 1893999984899997889999851
Q 000909 1018 KPGTSVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1018 ~~Ge~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
++-=++.++|++|+|||||++-+.+
T Consensus 15 ~k~~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 15 NKELRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHC
T ss_conf 9668999999999988999988733
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.05 E-value=0.65 Score=19.25 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=25.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 9999848999978899998512569987488
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQRFYDVEQGSVR 1052 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~ 1052 (1230)
|+.++|.+|+|||||++-+..-.-|+.|-..
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~~ 34 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIVE 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCEEE
T ss_conf 9999999998889999988408979724799
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.98 E-value=0.41 Score=20.81 Aligned_cols=22 Identities=27% Similarity=0.529 Sum_probs=14.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998489994899999994178
Q 000909 386 VALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 386 ~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
+.+.||.|+||||+++++++.+
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899877558999999985
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=82.52 E-value=0.44 Score=20.57 Aligned_cols=138 Identities=16% Similarity=0.204 Sum_probs=70.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECCCCCHHHHHHCCEEECCCCCCCCCCHHHHH--CCCCCCCC
Q ss_conf 3999984899997889999851256--9987488899406898968886501687025667864488886--23999999
Q 000909 1021 TSVGLVGKSGCGKSTVIGLIQRFYD--VEQGSVRVDGMDVRELDVHWYRKHTALVSQEPVIYAGNIRDNI--VFGKLDAS 1096 (1230)
Q Consensus 1021 e~vaIvG~SGsGKSTL~~lL~rl~~--~~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~gTIreNi--~~~~~~~s 1096 (1230)
.-+||+|+.|||||||+..|+-.-. ...|++. +|..+.+....+..+.+++-..-..+--..-+-|+ ++|..+..
T Consensus 7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~-~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~ 85 (276)
T d2bv3a2 7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH-EGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFT 85 (276)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTSSCC--------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCS
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEE-CCCEEEECCHHHHHCCCCCCCCEEEECCCCEEEEEECCCCHHHHH
T ss_conf 2999995898998999999999648534023365-184698565888751886001123431598389995278602269
Q ss_pred HHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE---EECCCCCCCHHHHHHHHHHH
Q ss_conf 989999999823099998120233321159999999259999999999702998778---61666786889799999999
Q 000909 1097 ENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILL---LDEATSALDVQSEQVVQEAL 1173 (1230)
Q Consensus 1097 ~~~i~~al~~a~l~~~i~~Lp~Gldt~ige~G~~LSgGQrQrlaLARAll~~~~ILi---LDEaTS~LD~~te~~i~~~l 1173 (1230)
.++..++..+...=+ |=+.....-.+-++..-.|+. .+-|.++. ||-+-+..+ .+.+.+
T Consensus 86 -~e~~~~l~~~D~avl-----------Vvda~~Gv~~~T~~~w~~a~~-~~lP~i~fINKmDr~~ad~~-----~~l~ei 147 (276)
T d2bv3a2 86 -IEVERSMRVLDGAIV-----------VFDSSQGVEPQSETVWRQAEK-YKVPRIAFANKMDKTGADLW-----LVIRTM 147 (276)
T ss_dssp -TTHHHHHHHCCEEEE-----------EEETTTSSCHHHHHHHHHHHT-TTCCEEEEEECTTSTTCCHH-----HHHHHH
T ss_pred -HHHHHHHHHHHHEEE-----------ECCCCCCCCHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCC-----HHHHHH
T ss_conf -999999996300577-----------322567744669999999998-59997999864456543121-----268999
Q ss_pred HHHC
Q ss_conf 9860
Q 000909 1174 DRIM 1177 (1230)
Q Consensus 1174 ~~~~ 1177 (1230)
++.+
T Consensus 148 ~~~l 151 (276)
T d2bv3a2 148 QERL 151 (276)
T ss_dssp HHTT
T ss_pred HHHH
T ss_conf 9985
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.48 E-value=0.49 Score=20.18 Aligned_cols=46 Identities=22% Similarity=0.339 Sum_probs=32.3
Q ss_pred CEEEEEECCCEEEEECCCCCCHHHHHHHHHCC-CCCCCCEEEECCEE
Q ss_conf 10279718939999848999978899998512-56998748889940
Q 000909 1012 QFSMEVKPGTSVGLVGKSGCGKSTVIGLIQRF-YDVEQGSVRVDGMD 1057 (1230)
Q Consensus 1012 ~isl~I~~Ge~vaIvG~SGsGKSTL~~lL~rl-~~~~~G~I~idG~d 1057 (1230)
|.=+.+-+||+++|.|++|+|||||+.-+.+- ...+.+.+.+-+..
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V~~~iG 106 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVG 106 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHHHHTTTCSSEEEEEEES
T ss_pred EEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 10256367887776679998989999999998876179969999955
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.41 E-value=0.51 Score=20.10 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899997889999851
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
|++++|+.|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.38 E-value=0.72 Score=18.91 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899997889999851
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
|+.+||.+|+|||||++-+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999899899999999970
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=82.37 E-value=0.46 Score=20.40 Aligned_cols=34 Identities=35% Similarity=0.473 Sum_probs=26.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEEC
Q ss_conf 399998489999788999985125------------6998748889
Q 000909 1021 TSVGLVGKSGCGKSTVIGLIQRFY------------DVEQGSVRVD 1054 (1230)
Q Consensus 1021 e~vaIvG~SGsGKSTL~~lL~rl~------------~~~~G~I~id 1054 (1230)
=++||||.-.+|||||+++|.+-- +|.-|.+.+.
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~ 56 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVP 56 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
T ss_conf 3799978999989999999977898774789966703876899606
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.35 E-value=0.48 Score=20.31 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899997889999851
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
|+.++|.+|+|||||++-+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999899999999964
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.29 E-value=0.42 Score=20.75 Aligned_cols=20 Identities=35% Similarity=0.493 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998489999788999985
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQ 1041 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~ 1041 (1230)
|+.++|.+|+|||||++-+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~ 24 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHL 24 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999908899999998
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=82.22 E-value=0.47 Score=20.37 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999848999489999999417
Q 000909 385 SVALVGASGSGKSTAIALVQRF 406 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~ 406 (1230)
.++++|+.++|||||+..|+..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999947898499999999998
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.98 E-value=0.3 Score=21.90 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999984899997889999851
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQR 1042 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~r 1042 (1230)
|+.++|..|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999499999999970
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.83 E-value=0.72 Score=18.91 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998489999788999985
Q 000909 1022 SVGLVGKSGCGKSTVIGLIQ 1041 (1230)
Q Consensus 1022 ~vaIvG~SGsGKSTL~~lL~ 1041 (1230)
|+.++|.+|+|||||++-+.
T Consensus 5 KvvllG~~~vGKTSli~r~~ 24 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYT 24 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999969999999997
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=81.61 E-value=0.55 Score=19.83 Aligned_cols=25 Identities=8% Similarity=0.030 Sum_probs=11.3
Q ss_pred CEEEEECCHHHHHHHCCCHHHHHHHH
Q ss_conf 86978259367873028278999998
Q 000909 567 GCLVEIGTHNDLINRIDGHYAKMAKL 592 (1230)
Q Consensus 567 G~i~~~g~~~~l~~~~~~~~~~~~~~ 592 (1230)
|+--|. -..+.++..+..|..+++.
T Consensus 181 gR~~E~-i~~eYL~~L~~~Y~~L~nT 205 (331)
T d1osna_ 181 ARPGET-VNLPFVMVLRNVYIMLINT 205 (331)
T ss_dssp ----CC-CCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCC-CCHHHHHHHHHHHHHHHHH
T ss_conf 998788-9999999999999999979
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=81.51 E-value=0.47 Score=20.35 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999984899948999999941787
Q 000909 385 SVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 385 ~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
.++|-|+-||||||+++.|...+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989867789999999999817
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=81.45 E-value=0.21 Score=23.08 Aligned_cols=123 Identities=15% Similarity=0.158 Sum_probs=55.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEECCCCCHHHHHHCCEEECCC-CCCCCCCHHHHH--CCCCCC
Q ss_conf 939999848999978899998512569--987488899406898968886501687025-667864488886--239999
Q 000909 1020 GTSVGLVGKSGCGKSTVIGLIQRFYDV--EQGSVRVDGMDVRELDVHWYRKHTALVSQE-PVIYAGNIRDNI--VFGKLD 1094 (1230)
Q Consensus 1020 Ge~vaIvG~SGsGKSTL~~lL~rl~~~--~~G~I~idG~di~~~~~~~lR~~i~~V~Qd-~~LF~gTIreNi--~~~~~~ 1094 (1230)
.=.+||+|+-++|||||+..|+..... ..|++. ++ ...+...++-.+.+++-... ++-+++. .-|+ ++|..+
T Consensus 3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~-~~-~~~d~~~eE~~rgiTi~~~~~~~~~~~~-~i~iiDtPGh~d 79 (204)
T d2c78a3 3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVK-DY-GDIDKAPEERARGITINTAHVEYETAKR-HYSHVDCPGHAD 79 (204)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCC-CH-HHHSCSHHHHHHTCCCSCEEEEEECSSC-EEEEEECCCSGG
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHH-HH-HHCCCCHHHHCCCEEEEEEEEEEEECCE-EEEEEECCCCHH
T ss_conf 71999994789849999999999852304774113-54-3113455775587579843799970881-899982898265
Q ss_pred CCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE----EECCC
Q ss_conf 99989999999823099998120233321159999999259999999999702998778----61666
Q 000909 1095 ASENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQRQRIAIARAIIRNPTILL----LDEAT 1158 (1230)
Q Consensus 1095 ~s~~~i~~al~~a~l~~~i~~Lp~Gldt~ige~G~~LSgGQrQrlaLARAll~~~~ILi----LDEaT 1158 (1230)
.. .++..++..+...=++ .|. . ..+..+-++-+.+|+.+ .-|++++ +|-..
T Consensus 80 f~-~~~~~~~~~aD~avlV------vda---~--~Gv~~qt~~~~~~~~~~-gi~~iiv~iNK~D~~~ 134 (204)
T d2c78a3 80 YI-KNMITGAAQMDGAILV------VSA---A--DGPMPQTREHILLARQV-GVPYIVVFMNKVDMVD 134 (204)
T ss_dssp GH-HHHHHHHTTCSSEEEE------EET---T--TCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGCC
T ss_pred HH-HHHHHHHHHCCEEEEE------EEC---C--CCCCHHHHHHHHHHHHC-CCCEEEEEEEECCCCC
T ss_conf 49-9999999878999999------989---9--99847899999999985-9993899998536679
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=81.22 E-value=0.42 Score=20.73 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=21.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 39999848999978899998512569987488899
Q 000909 1021 TSVGLVGKSGCGKSTVIGLIQRFYDVEQGSVRVDG 1055 (1230)
Q Consensus 1021 e~vaIvG~SGsGKSTL~~lL~rl~~~~~G~I~idG 1055 (1230)
..+.++||||+|||.|++.|.+.+.. --|.+|.
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~~l~~--~~i~~d~ 85 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSKALGI--ELLRFDM 85 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTC--EEEEEEG
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCC--CEEEECC
T ss_conf 58999778750069999999863367--7067415
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=80.62 E-value=0.34 Score=21.39 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=13.0
Q ss_pred CCCEEEEECCCCCCHHHHHHH
Q ss_conf 897999984899948999999
Q 000909 382 AGKSVALVGASGSGKSTAIAL 402 (1230)
Q Consensus 382 ~g~~~~ivG~sGsGKSTl~~l 402 (1230)
.|+-+.++.|+|||||+..-+
T Consensus 57 ~g~~~~i~apTGsGKT~~~~~ 77 (237)
T d1gkub1 57 RKESFAATAPTGVGKTSFGLA 77 (237)
T ss_dssp TTCCEECCCCBTSCSHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHH
T ss_conf 799779992689769999999
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=80.55 E-value=0.86 Score=18.34 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=24.7
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8389799998489994899999994178
Q 000909 380 VKAGKSVALVGASGSGKSTAIALVQRFY 407 (1230)
Q Consensus 380 i~~g~~~~ivG~sGsGKSTl~~ll~~~~ 407 (1230)
.++-..+.+.||.++|||+++.+|..++
T Consensus 101 ~~k~n~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 101 FGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp STTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9761799998589887789999999983
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=80.17 E-value=0.63 Score=19.38 Aligned_cols=28 Identities=29% Similarity=0.528 Sum_probs=24.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3897999984899948999999941787
Q 000909 381 KAGKSVALVGASGSGKSTAIALVQRFYD 408 (1230)
Q Consensus 381 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~ 408 (1230)
...+.+.|.|+||||||+-.+.++..+-
T Consensus 84 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 111 (684)
T d1lkxa_ 84 QENQCVIISGESGAGKTEASKKIMQFLT 111 (684)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8981899973898998999999999999
|