Citrus Sinensis ID: 000913
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1226 | 2.2.26 [Sep-21-2011] | |||||||
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.966 | 0.826 | 0.723 | 0.0 | |
| Q949G3 | 1436 | Pleiotropic drug resistan | N/A | no | 0.960 | 0.819 | 0.705 | 0.0 | |
| Q9M9E1 | 1423 | ABC transporter G family | yes | no | 0.972 | 0.837 | 0.688 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | yes | no | 0.976 | 0.828 | 0.689 | 0.0 | |
| O24367 | 1441 | Pleiotropic drug resistan | N/A | no | 0.973 | 0.828 | 0.695 | 0.0 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | no | no | 0.976 | 0.817 | 0.690 | 0.0 | |
| Q7PC80 | 1468 | Probable pleiotropic drug | no | no | 0.960 | 0.802 | 0.693 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | no | no | 0.973 | 0.819 | 0.693 | 0.0 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.973 | 0.819 | 0.692 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | no | no | 0.979 | 0.828 | 0.683 | 0.0 |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1848 bits (4786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 878/1214 (72%), Positives = 1015/1214 (83%), Gaps = 29/1214 (2%)
Query: 13 SLR-RSASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILTTSRGEANEV 71
SLR S S W N + FSRSSR+EDDEEALKWAALEKLPT++RLRKG+L S+G A EV
Sbjct: 21 SLRANSNSIWRNNGVEIFSRSSRDEDDEEALKWAALEKLPTFDRLRKGLLFGSQGAAAEV 80
Query: 72 DVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAF 131
D+ +LG QER+ L+++LVKV D DNE+FLLKLKNRIDRVGIDLP +EVRYEHLN++A+A+
Sbjct: 81 DINDLGFQERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDLPTIEVRYEHLNIDADAY 140
Query: 132 LASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGK 191
+ S +LP+F+ F TN E +LN L I+ S+KR LTILKD+SG+IKP R+TLLLGPPSSGK
Sbjct: 141 VGSRSLPTFMNFMTNFVETLLNSLHILSSRKRQLTILKDISGIIKPCRMTLLLGPPSSGK 200
Query: 192 TTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSA 251
TTLLLALAGKLDP LKV+G V+YNGH++ EFVPQRTAAYISQHD HIGEMTVRETL FSA
Sbjct: 201 TTLLLALAGKLDPALKVTGKVSYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETLEFSA 260
Query: 252 RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311
RCQGVG+R+EML EL+RREKAA IKPD DID+YMKA ATEGQEANV+TDY LK+LGLD+C
Sbjct: 261 RCQGVGSRFEMLAELSRREKAANIKPDADIDIYMKAAATEGQEANVVTDYVLKILGLDIC 320
Query: 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 371
ADTMVGD+MIRGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+ IVN LRQ++
Sbjct: 321 ADTMVGDDMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTYSIVNSLRQSVQ 380
Query: 372 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVAD 431
I GTAVISLLQPAPETY+LFDDIILLSDG IVYQGPR+ VLEFF SMGF+CP+RKGVAD
Sbjct: 381 ILKGTAVISLLQPAPETYNLFDDIILLSDGYIVYQGPRDDVLEFFESMGFKCPQRKGVAD 440
Query: 432 FLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAA 491
FLQEVTS+KDQ+QYW+ + +PYRF+T +EFAEA+QSFHVG+K+ DEL TPFDK+K H AA
Sbjct: 441 FLQEVTSKKDQQQYWSKRNEPYRFITSKEFAEAYQSFHVGRKLGDELATPFDKTKCHPAA 500
Query: 492 LTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTV 551
LT E YG+GK+ELLK RELLLMKRNSFVY+FK Q+ +A++ MTLF RT+M +DT
Sbjct: 501 LTNEKYGIGKKELLKVCTERELLLMKRNSFVYMFKFSQLTIMALITMTLFFRTEMPRDTT 560
Query: 552 TDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPV 611
DGGI+AGA FF + M+ FNG SE++MTI KLPVFYKQRD FFP WAYAIPSWILKIPV
Sbjct: 561 DDGGIYAGALFFVVIMIMFNGMSELAMTIFKLPVFYKQRDLLFFPSWAYAIPSWILKIPV 620
Query: 612 SFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFG 671
+ +EV +WV L+YYV+G+D N RF KQ+ LL+ VNQMAS +FRFI GR M VA+TFG
Sbjct: 621 TLVEVGLWVILTYYVIGFDPNITRFLKQFLLLIVVNQMASGMFRFIGAVGRTMGVASTFG 680
Query: 672 SFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSET 731
SFALL+ +LGGF+LSR+D+K WW W YW SP+ Y+ N+I+ NEF G W +ET
Sbjct: 681 SFALLLQFALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGKKWNHIVPGGNET 740
Query: 732 LGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESN 791
LG V+KSRGFF YWYW+G+GAL GF ++ NF Y+LAL +L+PF+KP+AV+ E+ E+
Sbjct: 741 LGSTVVKSRGFFPEAYWYWIGVGALVGFTVVFNFCYSLALAYLNPFDKPQAVLPEDGENA 800
Query: 792 EQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPF 851
E G S+ T + D I Q++ KKGMVLPF
Sbjct: 801 EN-------------GEVSSQITSTDGGDSISESQNN---------------KKGMVLPF 832
Query: 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM 911
EPHS+TFD+VVYSVDMP+EMK QG ED+LVLL GVSGAFRPGVLTALMGVSGAGKTTLM
Sbjct: 833 EPHSITFDDVVYSVDMPQEMKEQGAGEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLM 892
Query: 912 DVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS 971
DVLAGRKTGGYI G I ISGYPKKQETFARISGYCEQNDIHSP+VT+YESL++SAWLRL
Sbjct: 893 DVLAGRKTGGYIDGEIKISGYPKKQETFARISGYCEQNDIHSPYVTVYESLVYSAWLRLP 952
Query: 972 PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1031
+VD +TRKMF+DEVMELVEL PLR +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFM
Sbjct: 953 QDVDEKTRKMFVDEVMELVELGPLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1012
Query: 1032 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091
DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG
Sbjct: 1013 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1072
Query: 1092 PLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRR 1151
PLGRHSCHLI YFE+ PGV KIK+GYNPATWMLEV+A++QE+ LGIDFTE YK SDLYRR
Sbjct: 1073 PLGRHSCHLIKYFESNPGVAKIKEGYNPATWMLEVTASAQEMMLGIDFTEVYKNSDLYRR 1132
Query: 1152 NKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFI 1211
NKALI +L P PGSKDL+F TQ+SQS W Q VACLWKQHWSYWRNP YTAVRF FT FI
Sbjct: 1133 NKALISELGVPRPGSKDLHFETQYSQSFWTQCVACLWKQHWSYWRNPAYTAVRFIFTTFI 1192
Query: 1212 ALLFGSLFWDLGGR 1225
AL+FG++FWDLG +
Sbjct: 1193 ALIFGTMFWDLGTK 1206
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q949G3|PDR1_NICPL Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1794 bits (4647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 854/1210 (70%), Positives = 1009/1210 (83%), Gaps = 33/1210 (2%)
Query: 17 SASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILTTSRGEANEVDVYNL 76
S S W N FSRS+R+EDDEEALKWAALEKLPTY+RLRKGIL S+G A EVDV +
Sbjct: 30 SNSIWRNNGAEVFSRSARDEDDEEALKWAALEKLPTYDRLRKGILFGSQGAAAEVDVDDS 89
Query: 77 GLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNA 136
G+ ER+ L+++LVKV D DNE+FLLKLKNRIDRVGID P +EVR+EHLN++A+A++ S A
Sbjct: 90 GVLERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDFPSIEVRFEHLNIDADAYVGSRA 149
Query: 137 LPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLL 196
LP+F F +N E +L+ + I+PSKKR +TILKDVSG++KP R+TLLLGPP SGKTTLLL
Sbjct: 150 LPTFTNFISNFVEGLLDSIHILPSKKRQVTILKDVSGIVKPCRMTLLLGPPGSGKTTLLL 209
Query: 197 ALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 256
ALAGKLD LKV+G VTYNGH++ EFVPQRTAAYISQHD HIGEMTVRETL FSARCQGV
Sbjct: 210 ALAGKLDSALKVTGKVTYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETLEFSARCQGV 269
Query: 257 GTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316
G+RYEML EL+RREKAA IKPD DID++MKA +TEGQEA V+TDY LK+LGLD+CADTMV
Sbjct: 270 GSRYEMLAELSRREKAANIKPDADIDMFMKAASTEGQEAKVVTDYILKILGLDICADTMV 329
Query: 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT 376
GD+MIRGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+ IVN L+Q++ I GT
Sbjct: 330 GDQMIRGISGGQKKRVTTGEMIVGPSKALFMDEISTGLDSSTTYSIVNSLKQSVRIMKGT 389
Query: 377 AVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436
A+ISLLQPAPETY+LFDDIILLSDG IVY+GPRE VLEFF SMGF+CP+RKG ADFLQEV
Sbjct: 390 ALISLLQPAPETYNLFDDIILLSDGYIVYEGPREEVLEFFESMGFKCPERKGAADFLQEV 449
Query: 437 TSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTET 496
TS+KDQ+QYW +++PYRF+T +EFAEA+QSFHVG+K+SDEL+T FDKSKSH AALTT+
Sbjct: 450 TSKKDQQQYWIRRDEPYRFITSKEFAEAYQSFHVGRKVSDELKTTFDKSKSHPAALTTQK 509
Query: 497 YGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGI 556
YG+GKR+LLK RELLLM+RNSFVY+FK Q+ +A++ MT+F RTKM +D+ DGGI
Sbjct: 510 YGIGKRQLLKVCTERELLLMQRNSFVYLFKFFQLLIIALMTMTIFFRTKMPRDSAEDGGI 569
Query: 557 FAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEV 616
++GA FF + M+ FNG SE+ MT+ KLPVFYKQRDF F+P WAYAIPSWILKIPV+F EV
Sbjct: 570 YSGALFFVVIMIMFNGLSELPMTLYKLPVFYKQRDFLFYPSWAYAIPSWILKIPVTFAEV 629
Query: 617 AVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALL 676
+WVFL+YYV+G+D N GRFFKQ+ LLL VNQMASALFRFIA GR M VA+TFG+FALL
Sbjct: 630 GMWVFLTYYVMGFDPNVGRFFKQFLLLLLVNQMASALFRFIAAVGRTMGVASTFGAFALL 689
Query: 677 VLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQV 736
+ +LGGFIL+R D+K WW W YW SPL Y+ NAI+ NEF G WK +E LG V
Sbjct: 690 LQFALGGFILARNDVKDWWIWGYWTSPLMYSVNAILVNEFDGQKWKHIVAGGTEPLGAAV 749
Query: 737 LKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDR 796
+++RGFF YWYW+G+GAL GF+++ N AY++AL +L+PF+KP+A I++E E+NE
Sbjct: 750 VRARGFFPDAYWYWIGVGALAGFIVMFNIAYSVALAYLNPFDKPQATISDESENNES--- 806
Query: 797 IGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAE-ASRPKKKGMVLPFEPHS 855
+SS Q S E + AS KKKGMVLPF+PHS
Sbjct: 807 -----------------------------ESSPQITSTQEGDSASENKKKGMVLPFDPHS 837
Query: 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 915
+TFDEVVYSVDMP EM+ G +++LVLL VSGAFRPGVLTALMGVSGAGKTTLMDVLA
Sbjct: 838 ITFDEVVYSVDMPPEMRESGTSDNRLVLLKSVSGAFRPGVLTALMGVSGAGKTTLMDVLA 897
Query: 916 GRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD 975
GRKTGGYI G+I ISGYPKKQ+TFARISGYCEQNDIHSP+VT++ESL++SAWLRL +V+
Sbjct: 898 GRKTGGYIDGSIKISGYPKKQDTFARISGYCEQNDIHSPYVTVFESLVYSAWLRLPQDVN 957
Query: 976 SETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1035
E R MF++EVM+LVEL PLR +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPT
Sbjct: 958 EEKRMMFVEEVMDLVELTPLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1017
Query: 1036 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 1095
SGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR
Sbjct: 1018 SGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 1077
Query: 1096 HSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKAL 1155
SCHLI YFE+IPGV KI +GYNPATWMLEV+A+SQE+ALG+DFT+ YK+SDLYRRNKAL
Sbjct: 1078 QSCHLIKYFESIPGVSKIVEGYNPATWMLEVTASSQEMALGVDFTDLYKKSDLYRRNKAL 1137
Query: 1156 IEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLF 1215
I++LS P PG+ DL+F ++FSQ W Q +ACLWKQHWSYWRNP YTAVR FT FIAL+F
Sbjct: 1138 IDELSVPRPGTSDLHFDSEFSQPFWTQCMACLWKQHWSYWRNPAYTAVRLIFTTFIALIF 1197
Query: 1216 GSLFWDLGGR 1225
G++FWD+G +
Sbjct: 1198 GTMFWDIGTK 1207
|
Excretes secondary metabolites such as terpenes. Involved in both constitutive and jasmonic acid-dependent induced defense. Confers some resistance to sclareol and B.cinerea. Nicotiana plumbaginifolia (taxid: 4092) |
| >sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1779 bits (4607), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 846/1229 (68%), Positives = 1007/1229 (81%), Gaps = 37/1229 (3%)
Query: 1 MEGTHDIFMASTSLRRSASRWNTNS-IGAFSRSSREEDDEEALKWAALEKLPTYNRLRKG 59
MEGT AS S+RR++S W +S FSRSSREEDDEEAL+WAALEKLPT++RLRKG
Sbjct: 1 MEGT-SFHQASNSMRRNSSVWKKDSGREIFSRSSREEDDEEALRWAALEKLPTFDRLRKG 59
Query: 60 ILTTSR--GEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKV 117
ILT S G NE+D+ LG Q+ ++L+++L+KV D ++E+ L KLK RIDRVGIDLP +
Sbjct: 60 ILTASHAGGPINEIDIQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTI 119
Query: 118 EVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKP 177
EVR++HL VEAE + ALP+F+ F +N + LN L ++P++K+ TIL DVSG++KP
Sbjct: 120 EVRFDHLKVEAEVHVGGRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKP 179
Query: 178 GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNH 237
GR+ LLLGPPSSGKTTLLLALAGKLD LK +G VTYNGH M+EFVPQRTAAYI Q+D H
Sbjct: 180 GRMALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVH 239
Query: 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANV 297
IGEMTVRET A++AR QGVG+RY+MLTELARREK A IKPDPDID++MKA++T G++ NV
Sbjct: 240 IGEMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNV 299
Query: 298 ITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 357
+TDY LK+LGL+VCADTMVGD+M+RGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSS
Sbjct: 300 MTDYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSS 359
Query: 358 TTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFA 417
TT+QIVN LR +HI +GTA+ISLLQPAPET++LFDDIIL+++G+I+Y+GPR+ V+EFF
Sbjct: 360 TTYQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFE 419
Query: 418 SMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDE 477
+MGF+CP RKGVADFLQEVTS+KDQ QYWA +++PYRF+ V+EFAEAFQSFHVG++I DE
Sbjct: 420 TMGFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDE 479
Query: 478 LRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVY 537
L PFDK+KSH AALTT+ YGVG +EL+K + SRE LLMKRNSFVY FK Q+ +A +
Sbjct: 480 LALPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLT 539
Query: 538 MTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPP 597
MTLF RT+M K T DG ++ GA FF + M+ FNG SE+SMTIAKLPVFYKQRD F+P
Sbjct: 540 MTLFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPA 599
Query: 598 WAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFI 657
W Y++P W+LKIP+SF+E A+ F++YYV+G+D N GR FKQY LL+ +NQMASALF+ +
Sbjct: 600 WVYSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMV 659
Query: 658 AVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFL 717
A GRNM+VANTFG+FA+LV +LGG +LSR+DIKKWW W YW SP+ Y QNAI+ANEF
Sbjct: 660 AALGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFF 719
Query: 718 GHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPF 777
GHSW + ++SSETLGV LKSRGF H YWYW+G GAL GFV+L NF +TLALTFL+
Sbjct: 720 GHSWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSL 779
Query: 778 EKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEA 837
KP+AVI EE S+E + S++S + EA
Sbjct: 780 GKPQAVIAEEPASDET-------------------------------ELQSARSEGVVEA 808
Query: 838 EASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLT 897
A+ KK+GMVLPFEPHS+TFD VVYSVDMP+EM QG ED+LVLL GV+GAFRPGVLT
Sbjct: 809 GAN--KKRGMVLPFEPHSITFDNVVYSVDMPQEMIEQGTQEDRLVLLKGVNGAFRPGVLT 866
Query: 898 ALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 957
ALMGVSGAGKTTLMDVLAGRKTGGYI GNITISGYPK Q+TFARISGYCEQ DIHSP VT
Sbjct: 867 ALMGVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPKNQQTFARISGYCEQTDIHSPHVT 926
Query: 958 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLT 1017
+YESL++SAWLRL EVD RK+FI+EVMELVEL PLRQ+LVGLPG SGLSTEQRKRLT
Sbjct: 927 VYESLVYSAWLRLPKEVDKNKRKIFIEEVMELVELTPLRQALVGLPGESGLSTEQRKRLT 986
Query: 1018 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1077
IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE
Sbjct: 987 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1046
Query: 1078 LFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGI 1137
LFL+KRGG+EIYVGPLG S HLI+YFE+I G+ KI +GYNPATWMLEVS SQE ALG+
Sbjct: 1047 LFLLKRGGEEIYVGPLGHESTHLINYFESIQGINKITEGYNPATWMLEVSTTSQEAALGV 1106
Query: 1138 DFTEHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRN 1197
DF + YK S+LY+RNK LI++LS+P PGSKDLYFPTQ+SQS Q +A LWKQHWSYWRN
Sbjct: 1107 DFAQVYKNSELYKRNKELIKELSQPAPGSKDLYFPTQYSQSFLTQCMASLWKQHWSYWRN 1166
Query: 1198 PPYTAVRFFFTAFIALLFGSLFWDLGGRT 1226
PPYTAVRF FT IAL+FG++FWDLGG+T
Sbjct: 1167 PPYTAVRFLFTIGIALMFGTMFWDLGGKT 1195
|
May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1766 bits (4575), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 839/1217 (68%), Positives = 1004/1217 (82%), Gaps = 20/1217 (1%)
Query: 13 SLRRSASRWNTNS--IGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILTTSRGEANE 70
S+RR+AS W S AF RS REEDDEEALKWAA+EKLPTY+R+RKGILT G E
Sbjct: 15 SVRRTASSWRGTSGRSDAFGRSVREEDDEEALKWAAIEKLPTYDRMRKGILTA--GGVEE 72
Query: 71 VDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEA 130
VD+ LGLQER+ LI++LV+ + DNERFLLKL++R++RVGID P +EVR+E+L+++AEA
Sbjct: 73 VDIGGLGLQERRNLIERLVRTAEEDNERFLLKLRDRMERVGIDNPTIEVRFENLSIDAEA 132
Query: 131 FLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSG 190
++ + +P+F F++N D+L+ +RI+ S KR ++IL D+SG+I+PGR++LLLGPP SG
Sbjct: 133 YVGNRGIPTFTNFFSNKIMDVLSAMRIVSSGKRPISILHDISGIIRPGRMSLLLGPPGSG 192
Query: 191 KTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFS 250
KT+LLLALAGKLD TLKVSG VTYNGHDMDEFVPQRT+AYI QHD HIGEMTVRETLAFS
Sbjct: 193 KTSLLLALAGKLDSTLKVSGRVTYNGHDMDEFVPQRTSAYIGQHDLHIGEMTVRETLAFS 252
Query: 251 ARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV 310
ARCQGVGTRY+MLTEL+RREK A IKPDPDIDVYMKAI+ EGQE+ V+TDY LK+LGL++
Sbjct: 253 ARCQGVGTRYDMLTELSRREKEASIKPDPDIDVYMKAISVEGQES-VVTDYILKILGLEI 311
Query: 311 CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNI 370
CADTMVGD MIRGISGGQKKRVTTGEM+VGPA ALFMDEISTGLDSSTT+QIVN LRQ++
Sbjct: 312 CADTMVGDAMIRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTYQIVNSLRQSV 371
Query: 371 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVA 430
HI GTA+I+LLQPAPETYDLFDDI+LLS+GQIVYQGPRE +LEFF +MGF+CP+RKGVA
Sbjct: 372 HILGGTALIALLQPAPETYDLFDDIVLLSEGQIVYQGPRENILEFFEAMGFKCPERKGVA 431
Query: 431 DFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRA 490
DFLQEVTSRKDQ QYW +++PYR+++V +F+EAF+ FHVG+ + ELR PFD++++H A
Sbjct: 432 DFLQEVTSRKDQHQYWCRRDEPYRYISVNDFSEAFKEFHVGRNLGSELRVPFDRTRNHPA 491
Query: 491 ALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDT 550
ALTT YG+ K EL KA SRE LLMKRNSFVYIFK++Q+ + + MT+FLRTKMH+ +
Sbjct: 492 ALTTSRYGISKMELTKACFSREWLLMKRNSFVYIFKILQLIILGSIGMTVFLRTKMHRRS 551
Query: 551 VTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIP 610
V DG IF GA F + FNGF+E++M+IAKLP+FYKQRD F+P WAYA+P+W+LKIP
Sbjct: 552 VEDGAIFLGAMFLGLVTHLFNGFAELAMSIAKLPIFYKQRDLLFYPSWAYALPTWVLKIP 611
Query: 611 VSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTF 670
+SFLE AVW+ ++YYV+G+D N RFF+ Y LL+ ++QMAS LFR +A GR MVVA+TF
Sbjct: 612 ISFLECAVWICMTYYVMGFDPNIERFFRHYVLLVLISQMASGLFRLLAALGREMVVADTF 671
Query: 671 GSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQ--DS 728
GSFA L+LL LGGF++SRE+IKKWW W YW SPL YAQNAI NEFLGHSW K S
Sbjct: 672 GSFAQLILLVLGGFLISRENIKKWWIWGYWSSPLMYAQNAIAVNEFLGHSWNKVVDPTQS 731
Query: 729 SETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEI 788
++TLGVQVLK RG F WYW+G+GAL G+++L N + L L +LDP K +AV++EE
Sbjct: 732 NDTLGVQVLKVRGIFVDANWYWIGVGALLGYIMLFNILFILFLEWLDPLGKGQAVVSEEE 791
Query: 789 ESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMV 848
+ +R G NV+L TLG S ++ S + E + +K+GMV
Sbjct: 792 LREKHVNRTGENVELLTLGTDSQNS-------------PSDANAGRGEITGADTRKRGMV 838
Query: 849 LPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 908
LPF P S+TFD + YSVDMP+EMK +GV ED+L+LL GVSGAFRPGVLTALMGVSGAGKT
Sbjct: 839 LPFTPLSITFDNIRYSVDMPQEMKDKGVTEDRLLLLKGVSGAFRPGVLTALMGVSGAGKT 898
Query: 909 TLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWL 968
TLMDVLAGRKTGGYI G+I+ISGYPKKQETFARI+GYCEQNDIHSP VT+YESLL+SAWL
Sbjct: 899 TLMDVLAGRKTGGYIEGDISISGYPKKQETFARIAGYCEQNDIHSPHVTVYESLLYSAWL 958
Query: 969 RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1028
RL EVDSE RKMF++EVMELVEL LR +LVGLPGV+GLSTEQRKRLTIAVELVANPSI
Sbjct: 959 RLPSEVDSEARKMFVEEVMELVELTSLRGALVGLPGVNGLSTEQRKRLTIAVELVANPSI 1018
Query: 1029 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088
IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EI
Sbjct: 1019 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEI 1078
Query: 1089 YVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDL 1148
YVGPLG +SCHLI+YFE I GV+KIKDGYNPATWMLEV+ +QE LGI+F E Y+ SDL
Sbjct: 1079 YVGPLGHNSCHLINYFEGIQGVRKIKDGYNPATWMLEVTTLAQEDILGINFAEVYRNSDL 1138
Query: 1149 YRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFT 1208
Y+RNK LI +LS PPPGS DL+FPTQFSQ + Q +ACLWKQH SYWRNP YTA R FFT
Sbjct: 1139 YQRNKTLISELSTPPPGSTDLHFPTQFSQPFFTQCMACLWKQHKSYWRNPSYTATRIFFT 1198
Query: 1209 AFIALLFGSLFWDLGGR 1225
IAL+FG++F +LG +
Sbjct: 1199 TVIALIFGTIFLNLGKK 1215
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O24367|TUR2_SPIPO Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1748 bits (4526), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 844/1214 (69%), Positives = 997/1214 (82%), Gaps = 20/1214 (1%)
Query: 13 SLRRSASRWNTNSIG-AFSRSSREEDDEEALKWAALEKLPTYNRLRKGILTTSRGEANEV 71
SLRRS S W + S F RSSREEDDEEALKWAALEKLPTY+RLRKGI+T GE EV
Sbjct: 18 SLRRSVSAWRSPSTSDVFGRSSREEDDEEALKWAALEKLPTYDRLRKGIMTGDGGEIQEV 77
Query: 72 DVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAF 131
D+ LG QER+ L++KLV+ + DNERFLLKL+NR++RVGID P +EVR+EHLN+ AEAF
Sbjct: 78 DIQGLGFQERKNLLEKLVRNAEEDNERFLLKLRNRMERVGIDNPTIEVRFEHLNINAEAF 137
Query: 132 LASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGK 191
+ + +P+ + F+ N IL+ L ++PS KR ++IL DVSG+IKP R+TLLLGPP +GK
Sbjct: 138 VGNRGVPTLVNFFVNKAIWILSALHLMPSGKRPISILHDVSGIIKPCRMTLLLGPPGAGK 197
Query: 192 TTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSA 251
TTLLLALAGKLD TLKV+G VTYNGH M EFVPQRT+AYISQHD HIGEMTVRETLAFS+
Sbjct: 198 TTLLLALAGKLDNTLKVTGNVTYNGHGMHEFVPQRTSAYISQHDVHIGEMTVRETLAFSS 257
Query: 252 RCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311
RCQGVGTRYEMLTEL+RREK A IKPDPD+DVYMKA+A EGQE+ V+TDY LK+LGLD+C
Sbjct: 258 RCQGVGTRYEMLTELSRREKEANIKPDPDVDVYMKAVAVEGQES-VVTDYILKILGLDIC 316
Query: 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 371
ADTMVGD MIRGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQIVN LRQ++H
Sbjct: 317 ADTMVGDGMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIVNSLRQSVH 376
Query: 372 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVAD 431
I GTA+I+LLQPAPETYDLFDDI+LLSDGQIVYQGPRE VLEFF SMGF+CP+RKGVAD
Sbjct: 377 ILGGTALIALLQPAPETYDLFDDILLLSDGQIVYQGPRENVLEFFESMGFKCPERKGVAD 436
Query: 432 FLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAA 491
FLQEVTSRKDQ+QYW + +PYRFV V EF+EAF+SFHVG K+ +EL TPFD+S++H AA
Sbjct: 437 FLQEVTSRKDQQQYWVRENEPYRFVPVNEFSEAFKSFHVGAKLHEELSTPFDRSRNHPAA 496
Query: 492 LTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTV 551
LTT YG+ K ELLKA I RE LLMKRNSFVYIFK++Q+ +A++ MT+F RTK+ ++ +
Sbjct: 497 LTTSKYGISKMELLKACIDREWLLMKRNSFVYIFKVVQLIVLALIAMTVFFRTKLPRNGL 556
Query: 552 TDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPV 611
D IF GA F + FNGF+E++M+IAKLPVFYKQRD F+PPWAYA+P+WILKIP+
Sbjct: 557 EDATIFFGAMFLGLVTHLFNGFAELAMSIAKLPVFYKQRDLLFYPPWAYALPTWILKIPI 616
Query: 612 SFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFG 671
SF+E VW+ ++YYV+G+D N R F+ Y LL+ ++Q+AS LFR +A GR+MVVA+TFG
Sbjct: 617 SFVECGVWIAMTYYVIGFDPNVVRMFRHYLLLVLISQVASGLFRLLAAVGRDMVVADTFG 676
Query: 672 SFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSET 731
+FA LVLL LGGFI++RE IKK+W W YW SPL YAQNAI NEFLGHSW K + +T
Sbjct: 677 AFAQLVLLVLGGFIIAREKIKKFWIWGYWSSPLMYAQNAIAVNEFLGHSWNKLVDATGQT 736
Query: 732 LGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESN 791
LG + L++RG F + WYW+G+GAL G+++L NF + L L +LDP K + ++EE
Sbjct: 737 LGERFLRNRGIFVDKNWYWIGVGALIGYMVLFNFLFILFLEWLDPLGKGQTTVSEEALQE 796
Query: 792 EQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPF 851
++ +R G NV+L+T G ++ T G + +IR + +KKGMVLPF
Sbjct: 797 KEANRTGANVELATRGSAA---TSDGGSVEIRKDGN---------------RKKGMVLPF 838
Query: 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM 911
P S+TFD V YSVDMP+EMK +GV EDKL+LL GVSGAFRPGVLTALMGVSG GKTTLM
Sbjct: 839 TPLSITFDNVKYSVDMPQEMKDRGVTEDKLLLLKGVSGAFRPGVLTALMGVSGRGKTTLM 898
Query: 912 DVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS 971
DVLAGRKTGGYI G+I ISGYPK QETFARISGYCEQNDIHSP VT+YESLL+SAWLRL
Sbjct: 899 DVLAGRKTGGYIEGDIRISGYPKNQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLP 958
Query: 972 PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1031
EVD + RKMF+DEVM+LVELN LR SLVGLPGV+GLSTEQRKRLTIAVELVANPSIIFM
Sbjct: 959 AEVDEKQRKMFVDEVMDLVELNSLRGSLVGLPGVTGLSTEQRKRLTIAVELVANPSIIFM 1018
Query: 1032 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091
DEPTSGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIYVG
Sbjct: 1019 DEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVG 1078
Query: 1092 PLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRR 1151
PLGR S HLI YFE+I GV+KIK+ YNPATWMLEV+ SQE LG++F E Y+ SDLY+R
Sbjct: 1079 PLGRQSSHLIKYFESIDGVKKIKERYNPATWMLEVTTISQEEILGLNFAEVYRNSDLYKR 1138
Query: 1152 NKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFI 1211
NK LI++LS PPPGSKDL+F TQFSQS +Q +ACLWKQH SYWRNP YTA R FFT I
Sbjct: 1139 NKDLIKELSTPPPGSKDLFFATQFSQSFVMQCLACLWKQHKSYWRNPSYTATRLFFTVVI 1198
Query: 1212 ALLFGSLFWDLGGR 1225
AL+FG++FWDLG +
Sbjct: 1199 ALIFGTIFWDLGKK 1212
|
May be a general defense protein (By similarity). Seems involved in turion (dormant buds) formation. Confers resistance to the diterpenoid antifungal agent sclareol. Spirodela polyrrhiza (taxid: 29656) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1735 bits (4494), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 847/1226 (69%), Positives = 988/1226 (80%), Gaps = 29/1226 (2%)
Query: 17 SASRWNTNSIGAFSRSSRE------EDDEEALKWAALEKLPTYNRLRKGILTT------- 63
+AS W + G FSRS EDDEEAL+WAALEKLPTY+R+R+ +L
Sbjct: 25 AASMWWSADNGVFSRSRASSSGEDGEDDEEALRWAALEKLPTYDRVRRAVLPVVEEGGGG 84
Query: 64 SRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEH 123
VDV +LG QER+ L+++LV+V + DNERFLLKLK RIDRVGID+P +EVR+EH
Sbjct: 85 GEAGKKVVDVLSLGPQERRALLERLVRVAEDDNERFLLKLKERIDRVGIDIPTIEVRFEH 144
Query: 124 LNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLL 183
L EAE + ++ LP+ + TN E N L I+P+KK+ + IL DVSG++KP R+TLL
Sbjct: 145 LEAEAEVRVGNSGLPTVLNSMTNKLEGAANALGILPNKKQTMPILHDVSGIVKPRRMTLL 204
Query: 184 LGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243
LGPP SGKTTLLLALAG+L +K SG VTYNGH M++FVPQRTAAYISQHD HIGEMTV
Sbjct: 205 LGPPGSGKTTLLLALAGRLGKDIKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTV 264
Query: 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYL 303
RETL+FSARCQGVG+R++MLTEL+RREKAA IKPD DID +MKA A EGQE N+ITDY L
Sbjct: 265 RETLSFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKASAMEGQETNLITDYIL 324
Query: 304 KVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIV 363
K+LGLD+CADTMVGD+M+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIV
Sbjct: 325 KILGLDICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIV 384
Query: 364 NCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRC 423
LRQ IHI GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRE VLEFF MGF+C
Sbjct: 385 KSLRQAIHILGGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREGVLEFFELMGFKC 444
Query: 424 PKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFD 483
P+RKGVADFLQEVTSRKDQ+QYW +KPYR+V V++FA AFQSFH G+ I++EL TPFD
Sbjct: 445 PERKGVADFLQEVTSRKDQKQYWMQHDKPYRYVPVKDFASAFQSFHTGKSIANELATPFD 504
Query: 484 KSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLR 543
KSK+H AALTT YGV ELLKANI RE LLMKRNSFVYIF+ Q+ V+ + MT+F R
Sbjct: 505 KSKNHPAALTTSRYGVSAMELLKANIDREFLLMKRNSFVYIFRACQLMVVSAIAMTVFFR 564
Query: 544 TKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIP 603
TKMH+D+VTDG IF GA FF++ M+ FNG SE+ +TI KLPVF+KQRD FFP W Y IP
Sbjct: 565 TKMHRDSVTDGVIFMGALFFSVMMIMFNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIP 624
Query: 604 SWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRN 663
SWILKIP+SF+EV +VF+SYYV+G+D +AGRFFKQY L+L +NQMA+ALFRF+ RN
Sbjct: 625 SWILKIPMSFIEVGGFVFMSYYVIGFDPSAGRFFKQYLLMLAINQMAAALFRFVGGAARN 684
Query: 664 MVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKK 723
M+VAN FGSF LL+ + LGGFIL RE +KKWW W YW SP+ YAQNAI NEFLGHSW K
Sbjct: 685 MIVANVFGSFMLLIFMVLGGFILVREKVKKWWIWGYWISPMMYAQNAISVNEFLGHSWDK 744
Query: 724 FTQD--SSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPR 781
+ S+ETLGVQ L+SRG F WYW+G GAL GF++L N +TLALT+L P+ K +
Sbjct: 745 VLNNSLSNETLGVQALRSRGVFPEAKWYWIGFGALLGFIMLFNGLFTLALTYLKPYGKSQ 804
Query: 782 AVITEEIESNEQDDRIGGNV-QLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEAS 840
++EE E E+ I GNV + T+ S+N + ++SS+ A+ S
Sbjct: 805 PSVSEE-ELKEKQANINGNVLDVDTMASSTNLAI-------VDNTETSSEI-----ADNS 851
Query: 841 RPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALM 900
+P ++GMVLPF P SLTFD + YSVDMP+EMK G++ED+L LL GVSG+FRPGVLTALM
Sbjct: 852 QPTQRGMVLPFAPLSLTFDNIKYSVDMPQEMKAHGIVEDRLELLKGVSGSFRPGVLTALM 911
Query: 901 GVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960
GVSGAGKTTLMDVLAGRKTGGYI GNITISGYPKKQETFAR+SGYCEQNDIHSP VT+ E
Sbjct: 912 GVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARVSGYCEQNDIHSPQVTVSE 971
Query: 961 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAV 1020
SLLFSAWLRL +VDS TRKMFI+EVMELVEL PLR +LVGLPGV+GLSTEQRKRLTIAV
Sbjct: 972 SLLFSAWLRLPKDVDSNTRKMFIEEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAV 1031
Query: 1021 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1080
ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL
Sbjct: 1032 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1091
Query: 1081 MKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFT 1140
MKRGG+EIYVGPLG S LI YFE I GV +IKDGYNPATWMLEVS SQE ALG+DF
Sbjct: 1092 MKRGGEEIYVGPLGHQSSELIKYFEGIKGVSRIKDGYNPATWMLEVSTISQEQALGVDFC 1151
Query: 1141 EHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPY 1200
+ Y++S+L++RNKALI++LS PPPGS +LYFPT++S S Q +ACLWK H SYWRNPPY
Sbjct: 1152 DIYRKSELFQRNKALIQELSTPPPGSSELYFPTKYSLSFLNQCLACLWKMHLSYWRNPPY 1211
Query: 1201 TAVRFFFTAFIALLFGSLFWDLGGRT 1226
A+R FFT IALLFG++FWDLGG+T
Sbjct: 1212 NAIRLFFTTVIALLFGTIFWDLGGKT 1237
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q7PC80|PDR1_ORYSJ Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1726 bits (4471), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 835/1204 (69%), Positives = 972/1204 (80%), Gaps = 26/1204 (2%)
Query: 35 EEDDEEALKWAALEKLPTYNRLRKGILTTSRGEANE-----------VDVYNLGLQERQR 83
EEDDEEAL+WAAL+KLPTY+R+R IL GE E VDV++LG ER+
Sbjct: 50 EEDDEEALRWAALQKLPTYDRVRAAILPMVEGEGGEAGGGGGGRRVVVDVHSLGPHERRA 109
Query: 84 LIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKF 143
L+++LV+V D DNERFLLKLK RI RVGID+P +EVR+EHL VEAE + ++ +P+ +
Sbjct: 110 LLERLVRVADDDNERFLLKLKERISRVGIDMPTIEVRFEHLEVEAEVRVGNSGIPTVLNS 169
Query: 144 YTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD 203
TN E+ N L I+P++K+ L IL D+SG+IKP R+TLLLGPP SGKTT LLALAG+L
Sbjct: 170 ITNKIEEAANALGILPTRKQTLRILHDISGIIKPKRMTLLLGPPGSGKTTFLLALAGRLK 229
Query: 204 PTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEML 263
LK SG VTYNGH M++FVPQRTAAYISQHD HIGEMTVRETL+FSARCQGVG+R++ML
Sbjct: 230 -DLKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRETLSFSARCQGVGSRFDML 288
Query: 264 TELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323
TEL RREKAA IKPD D+D +MKA A EGQE+N+ITDY LK+LGL++CADTMVGD+M+RG
Sbjct: 289 TELTRREKAANIKPDADVDAFMKASAMEGQESNLITDYILKILGLEICADTMVGDDMVRG 348
Query: 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383
ISGGQ+KRVTTGEM+VGPA A FMDEISTGLDSSTTFQIV LRQ IHI GTAVISLLQ
Sbjct: 349 ISGGQRKRVTTGEMLVGPANAFFMDEISTGLDSSTTFQIVKSLRQTIHILGGTAVISLLQ 408
Query: 384 PAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQR 443
PAPETYDLFDDIILLSDG IVYQGPRE VLEFF MGF+CP+RKGVADFLQEVTSRKDQ+
Sbjct: 409 PAPETYDLFDDIILLSDGHIVYQGPRENVLEFFELMGFKCPERKGVADFLQEVTSRKDQK 468
Query: 444 QYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRE 503
QYWA +KPYR+V ++EFA AFQSFH G+ I++EL TPFDKSKSH AALTT YGV E
Sbjct: 469 QYWAQHDKPYRYVPIKEFASAFQSFHTGRSIANELATPFDKSKSHPAALTTSRYGVSAME 528
Query: 504 LLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFF 563
LLKANI RELLL+KRNSFVYIF+ IQ+ V+ + MT+F RTKMH+D+V DG IF GA FF
Sbjct: 529 LLKANIDRELLLIKRNSFVYIFRTIQLMTVSAMAMTVFFRTKMHRDSVADGVIFMGALFF 588
Query: 564 AITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLS 623
A+ M+ NG SE+ +TI KLPVF+KQRD FFP W Y IPSWILK P+SF+EV + F+S
Sbjct: 589 AVMMIMLNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWILKSPMSFIEVGGFCFMS 648
Query: 624 YYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGG 683
YYV+G+D N GRFFKQY L+L V+QMA+ALFRF+ RN++VAN FGSF LL+ + LGG
Sbjct: 649 YYVIGFDPNVGRFFKQYLLMLAVSQMAAALFRFVGGAARNLIVANVFGSFMLLIFMVLGG 708
Query: 684 FILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQD--SSETLGVQVLKSRG 741
FIL+R+ + KWW W YW SP+ YAQNA+ NEFLGHSW K + S+ETLGVQ L SRG
Sbjct: 709 FILARDKVNKWWIWGYWISPMMYAQNAVSVNEFLGHSWDKVLNNSLSNETLGVQALMSRG 768
Query: 742 FFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNV 801
F WYW+G GAL GF++L N +TLALT+L P K + I+EE E E+ I GNV
Sbjct: 769 IFPEAKWYWIGFGALLGFIMLFNILFTLALTYLKPDGKSQPSISEE-ELKEKQANINGNV 827
Query: 802 QLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEV 861
SSN+ GST G S A+ S+P ++GMVLPF P SLTF+++
Sbjct: 828 LDVDTMASSNNLAIVGST----GTGSEI-------ADNSQPTQRGMVLPFTPLSLTFEDI 876
Query: 862 VYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG 921
YSVDMP+EMK G++ED+L LL GVSG FRPGVLTALMGVSGAGKTTLMDVLAGRKTGG
Sbjct: 877 KYSVDMPQEMKAHGIVEDRLELLKGVSGCFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG 936
Query: 922 YITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKM 981
YI GNI+ISGYPKKQETFAR+SGYCEQNDIHSP VT+ ESLLFSAWLRL +VDS TRKM
Sbjct: 937 YIEGNISISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDSNTRKM 996
Query: 982 FIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
FI+EVMELVEL PLR +LVGLPGV+GLS EQRKRLTIAVELVANPSIIFMDEPTSGLDAR
Sbjct: 997 FIEEVMELVELKPLRDALVGLPGVNGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1056
Query: 1042 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLI 1101
AAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG+EIYVGPLG HS LI
Sbjct: 1057 AAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHHSSELI 1116
Query: 1102 SYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIEDLSR 1161
YFE I GV KI DGYNPATWMLEV+ SQE AL +DF + Y++S+L++RNKALI++LS
Sbjct: 1117 KYFEGIQGVSKITDGYNPATWMLEVTTVSQEQALDVDFCDIYRKSELFQRNKALIQELST 1176
Query: 1162 PPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWD 1221
PPPGS +LYFPTQ+SQS IQ +ACLWKQH SYWRNPPY A+R FFT IAL+FG++FWD
Sbjct: 1177 PPPGSSELYFPTQYSQSFLIQCLACLWKQHLSYWRNPPYNAIRLFFTTVIALIFGTIFWD 1236
Query: 1222 LGGR 1225
LGG+
Sbjct: 1237 LGGK 1240
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1725 bits (4468), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 847/1222 (69%), Positives = 989/1222 (80%), Gaps = 28/1222 (2%)
Query: 17 SASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGIL-------TTSRGEAN 69
S S W FSRSSREEDDEEAL+WAALEKLPTY+R+R+ IL G
Sbjct: 23 SGSMWRRGD-DVFSRSSREEDDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGGKG 81
Query: 70 EVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAE 129
VDV+ LG +ER+ L+++LV+V D DNE+FLLKLK+R+DRVGID+P +EVR+EHL EAE
Sbjct: 82 VVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHLEAEAE 141
Query: 130 AFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSS 189
+ ++ LP+ + TN E+ N L I+P++K+ + +L DVSG+IKP R+TLLLGPP S
Sbjct: 142 VRVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLLGPPGS 201
Query: 190 GKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAF 249
GKTTLLLALAG+L LK SG VTYNGH M+EFVP+RTAAYISQHD HIGEMTVRETLAF
Sbjct: 202 GKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVRETLAF 261
Query: 250 SARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD 309
SARCQGVG+R++MLTEL+RREKAA IKPD DID +MKA A GQEANV TDY LK+LGL+
Sbjct: 262 SARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILGLE 321
Query: 310 VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQN 369
+CADTMVGDEM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIVN LRQ
Sbjct: 322 ICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQT 381
Query: 370 IHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGV 429
+HI GTAVISLLQPAPETY+LFDDIILLSDGQIVYQGPRE VLEFF SMGF+CP RKGV
Sbjct: 382 VHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESMGFKCPDRKGV 441
Query: 430 ADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHR 489
ADFLQEVTS+KDQRQYWA +KPYRFVTV+EF AFQSFH G+ I++EL PFDKSKSH
Sbjct: 442 ADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHP 501
Query: 490 AALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKD 549
AAL T YG +ELLKANI RE+LLMKRNSFVY+F+ Q+ V+++ MTLF RTKM +D
Sbjct: 502 AALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRD 561
Query: 550 TVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKI 609
+VT GGI+ GA FF + M+ FNGFSE+++T+ KLPVF+KQRD F+P W+Y IPSWILKI
Sbjct: 562 SVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKI 621
Query: 610 PVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANT 669
P++F+EV +VFL+YYV+G+DSN G FFKQY L+L +NQMA +LFRFI RNM+VAN
Sbjct: 622 PITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANV 681
Query: 670 FGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSS 729
F SF LL+ + LGGFIL+RE +KKWW W YW SP+ YAQNAI NE +GHSW K S+
Sbjct: 682 FASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSA 741
Query: 730 --ETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEE 787
ETLGVQVLKSRG F WYW+G GA+ GF +L N +TLALT+L P+ R ++EE
Sbjct: 742 SNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEE 801
Query: 788 IESNEQ----DDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPK 843
E E+ + I G+V LS+ GS+ +G+ +D S + +
Sbjct: 802 -ELKEKRANLNGEIVGDVHLSS--GSTRRPMGNGTEND-----------STIVDDDTEVT 847
Query: 844 KKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVS 903
++GMVLPF P SL+FD V YSVDMP+EMK QGV +D+L LL GVSG+FRPGVLTALMGVS
Sbjct: 848 QRGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVS 907
Query: 904 GAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 963
GAGKTTLMDVLAGRKTGGYI G+I ISGYPKKQETFAR+SGYCEQNDIHSP VT+YESLL
Sbjct: 908 GAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLL 967
Query: 964 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV 1023
FSAWLRL +VDS TRKMFI+EVMELVEL LR +LVGLPGV+GLSTEQRKRLTIAVELV
Sbjct: 968 FSAWLRLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELV 1027
Query: 1024 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083
ANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKR
Sbjct: 1028 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKR 1087
Query: 1084 GGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHY 1143
GG+EIY GPLG HS LI YFE+IPGV KIKDGYNPATWMLEV+ QE ALG+DF++ Y
Sbjct: 1088 GGEEIYAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIY 1147
Query: 1144 KRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAV 1203
K+S+LY+RNKALI+DLS+P P S DLYFPTQ+SQSS Q +ACLWKQ+ SYWRNPPY AV
Sbjct: 1148 KKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAV 1207
Query: 1204 RFFFTAFIALLFGSLFWDLGGR 1225
RFFFT IALLFG++FWDLGG+
Sbjct: 1208 RFFFTTVIALLFGTIFWDLGGK 1229
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1723 bits (4462), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 846/1222 (69%), Positives = 988/1222 (80%), Gaps = 28/1222 (2%)
Query: 17 SASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGIL-------TTSRGEAN 69
S S W FSRSSREEDDEEAL+WAALEKLPTY+R+R+ IL G
Sbjct: 23 SGSMWRRGD-DVFSRSSREEDDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGGKG 81
Query: 70 EVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAE 129
VDV+ LG +ER+ L+++LV+V D DNE+FLLKLK+R+DRVGID+P +EVR+EHL EAE
Sbjct: 82 VVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHLEAEAE 141
Query: 130 AFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSS 189
+ ++ LP+ + TN E+ N L I+P++K+ + +L DVSG+IKP R+TLLLGPP S
Sbjct: 142 VRVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLLGPPGS 201
Query: 190 GKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAF 249
GKTTLLLALAG+L LK SG VTYNGH M+EFVP+RTAAYISQHD HIGEMTVRETLAF
Sbjct: 202 GKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVRETLAF 261
Query: 250 SARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD 309
SARCQGVG+R++MLTEL+RREKAA IKPD DID +MKA A GQEANV TDY LK+LGL+
Sbjct: 262 SARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILGLE 321
Query: 310 VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQN 369
+CADTMVGDEM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIVN LRQ
Sbjct: 322 ICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQT 381
Query: 370 IHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGV 429
+HI GTAVISLLQPAPETY+LFDDIILLSDGQIVYQGPRE VLEFF S GF+CP RKGV
Sbjct: 382 VHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESTGFKCPDRKGV 441
Query: 430 ADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHR 489
ADFLQEVTS+KDQRQYWA +KPYRFVTV+EF AFQSFH G+ I++EL PFDKSKSH
Sbjct: 442 ADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHP 501
Query: 490 AALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKD 549
AAL T YG +ELLKANI RE+LLMKRNSFVY+F+ Q+ V+++ MTLF RTKM +D
Sbjct: 502 AALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRD 561
Query: 550 TVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKI 609
+VT GGI+ GA FF + M+ FNGFSE+++T+ KLPVF+KQRD F+P W+Y IPSWILKI
Sbjct: 562 SVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKI 621
Query: 610 PVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANT 669
P++F+EV +VFL+YYV+G+DSN G FFKQY L+L +NQMA +LFRFI RNM+VAN
Sbjct: 622 PITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANV 681
Query: 670 FGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSS 729
F SF LL+ + LGGFIL+RE +KKWW W YW SP+ YAQNAI NE +GHSW K S+
Sbjct: 682 FASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSA 741
Query: 730 --ETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEE 787
ETLGVQVLKSRG F WYW+G GA+ GF +L N +TLALT+L P+ R ++EE
Sbjct: 742 SNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEE 801
Query: 788 IESNEQ----DDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPK 843
E E+ + I G+V LS+ GS+ +G+ +D S + +
Sbjct: 802 -ELKEKRANLNGEIVGDVHLSS--GSTRRPMGNGTEND-----------STIVDDDTEVT 847
Query: 844 KKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVS 903
++GMVLPF P SL+FD V YSVDMP+EMK QGV +D+L LL GVSG+FRPGVLTALMGVS
Sbjct: 848 QRGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVS 907
Query: 904 GAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 963
GAGKTTLMDVLAGRKTGGYI G+I ISGYPKKQETFAR+SGYCEQNDIHSP VT+YESLL
Sbjct: 908 GAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLL 967
Query: 964 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV 1023
FSAWLRL +VDS TRKMFI+EVMELVEL LR +LVGLPGV+GLSTEQRKRLTIAVELV
Sbjct: 968 FSAWLRLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELV 1027
Query: 1024 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083
ANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKR
Sbjct: 1028 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKR 1087
Query: 1084 GGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHY 1143
GG+EIY GPLG HS LI YFE+IPGV KIKDGYNPATWMLEV+ QE ALG+DF++ Y
Sbjct: 1088 GGEEIYAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIY 1147
Query: 1144 KRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAV 1203
K+S+LY+RNKALI+DLS+P P S DLYFPTQ+SQSS Q +ACLWKQ+ SYWRNPPY AV
Sbjct: 1148 KKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAV 1207
Query: 1204 RFFFTAFIALLFGSLFWDLGGR 1225
RFFFT IALLFG++FWDLGG+
Sbjct: 1208 RFFFTTVIALLFGTIFWDLGGK 1229
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1718 bits (4449), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 838/1226 (68%), Positives = 987/1226 (80%), Gaps = 25/1226 (2%)
Query: 13 SLRRSASRWNTNSIGAFSRSSR----EEDDEEALKWAALEKLPTYNRLRKGILTTSR--- 65
SLRR S W + FSRSS E+DDEEAL+WAALE+LPTY+R+R+GIL S
Sbjct: 10 SLRREGSMWRSGG-DVFSRSSSRFQDEDDDEEALRWAALERLPTYDRVRRGILAVSSEDG 68
Query: 66 ---GEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYE 122
GE EVDV LG +E + LI++LV+ D D+ERFLLKL+ R+DRVGID P +EVR+E
Sbjct: 69 GAGGEKVEVDVGRLGARESRALIERLVRAADDDHERFLLKLRERMDRVGIDYPTIEVRFE 128
Query: 123 HLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTL 182
+L VEA+ + + LP+ + TN E I N L I+P+KK+ +T+L DVSG+IKP R+TL
Sbjct: 129 NLEVEADVHVGNRGLPTLLNSVTNTVEAIGNALHILPNKKQPMTVLHDVSGIIKPRRMTL 188
Query: 183 LLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242
LLGPP SGKTTLLLALAGKLD LKVSG VTYNGH M EFVP+RTAAYISQHD HIGEMT
Sbjct: 189 LLGPPGSGKTTLLLALAGKLDKDLKVSGKVTYNGHGMHEFVPERTAAYISQHDLHIGEMT 248
Query: 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYY 302
VRETLAFSARCQGVGTRYEMLTELARREKAA IKPD DID+YMKA A GQE++V+TDY
Sbjct: 249 VRETLAFSARCQGVGTRYEMLTELARREKAANIKPDHDIDIYMKASAMGGQESSVVTDYI 308
Query: 303 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
LK+LGLD+CADT+VG+EM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT+QI
Sbjct: 309 LKILGLDICADTVVGNEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTYQI 368
Query: 363 VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFR 422
VN LRQ IHI GTAVISLLQPAPETY+LFDDIILLSDGQ+VYQGPRE VLEFF MGFR
Sbjct: 369 VNSLRQTIHILGGTAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEFFEFMGFR 428
Query: 423 CPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPF 482
CP RKGVADFLQEVTSRKDQ QYW +++PYRFV V++FA+AF+SFHVG+ I +EL PF
Sbjct: 429 CPARKGVADFLQEVTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSFHVGRSIQNELSEPF 488
Query: 483 DKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFL 542
D+++SH AAL T YGV ++ELLKA I RELLLMKRN+F+YIFK + + +A++ MT F
Sbjct: 489 DRTRSHPAALATSKYGVSRKELLKATIDRELLLMKRNAFMYIFKAVNLTLMALIVMTTFF 548
Query: 543 RTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAI 602
RT M D G I+ GA +FA+ V FNGF+E++MT+ KLPVF+KQRD FFP WAY I
Sbjct: 549 RTSMRHDR-DYGMIYLGALYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAWAYTI 607
Query: 603 PSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGR 662
PSWIL+IP++FLEV V+VF++YYV+G+D + RFFKQY LLL +NQM+SALFRFIA GR
Sbjct: 608 PSWILQIPITFLEVGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIAGIGR 667
Query: 663 NMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWK 722
+MVV++TFG +LL +LGGFIL+R D+KKWW W YW SPL+YAQNAI NEFLGHSW
Sbjct: 668 DMVVSHTFGPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGHSWS 727
Query: 723 KFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRA 782
+ + TLGV VLKSRG F WYW+GLGAL G+ LL N YT+AL+ L PF A
Sbjct: 728 QILPGENVTLGVSVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSPFTDSHA 787
Query: 783 VITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTD--DIRGQQSSSQSLSLAEAEAS 840
++E+ + + G V+ G + +R + I Q S S A++ AS
Sbjct: 788 SMSEDALKEKHANLTGEVVE-----GQKDTKSRKQELELSHIADQNSGINS---ADSSAS 839
Query: 841 RPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALM 900
R KGMVLPF P S++F++V YSVDMPE MK QG+ ED+L+LL GVSG+FRPGVLTALM
Sbjct: 840 R---KGMVLPFAPLSISFNDVRYSVDMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTALM 896
Query: 901 GVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960
GVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPKKQETFARISGYCEQNDIHSP VT+YE
Sbjct: 897 GVSGAGKTTLMDVLAGRKTGGYIEGDIRISGYPKKQETFARISGYCEQNDIHSPHVTVYE 956
Query: 961 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAV 1020
SL+FSAWLRL EVDSE RKMFI+EVM+LVEL LR +LVGLPGVSGLSTEQRKRLTIAV
Sbjct: 957 SLVFSAWLRLPSEVDSEARKMFIEEVMDLVELTSLRGALVGLPGVSGLSTEQRKRLTIAV 1016
Query: 1021 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1080
ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFL
Sbjct: 1017 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFL 1076
Query: 1081 MKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFT 1140
MKRGG+EIYVGP+G++S LI YFE I GV +IKDGYNPATWMLEV++++QE LG+DF+
Sbjct: 1077 MKRGGEEIYVGPVGQNSSKLIEYFEGIDGVSRIKDGYNPATWMLEVTSSAQEEMLGVDFS 1136
Query: 1141 EHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPY 1200
E Y++S+LY+RNK LIE+LS PPPGS DL FPTQ+S+S Q +ACLWKQ+WSYWRNP Y
Sbjct: 1137 EIYRQSELYQRNKELIEELSTPPPGSTDLNFPTQYSRSFITQCLACLWKQNWSYWRNPSY 1196
Query: 1201 TAVRFFFTAFIALLFGSLFWDLGGRT 1226
TAVR FT IAL+FG++FW+LG RT
Sbjct: 1197 TAVRLLFTIVIALMFGTMFWNLGTRT 1222
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1226 | ||||||
| 297743362 | 3142 | unnamed protein product [Vitis vinifera] | 0.993 | 0.387 | 0.746 | 0.0 | |
| 359482991 | 1445 | PREDICTED: pleiotropic drug resistance p | 0.986 | 0.836 | 0.743 | 0.0 | |
| 359482993 | 1430 | PREDICTED: pleiotropic drug resistance p | 0.979 | 0.839 | 0.747 | 0.0 | |
| 359482989 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.976 | 0.839 | 0.745 | 0.0 | |
| 356550580 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.975 | 0.838 | 0.741 | 0.0 | |
| 356555825 | 1427 | PREDICTED: pleiotropic drug resistance p | 0.973 | 0.836 | 0.745 | 0.0 | |
| 356555801 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.975 | 0.838 | 0.744 | 0.0 | |
| 255543331 | 1429 | ATP-binding cassette transporter, putati | 0.977 | 0.839 | 0.739 | 0.0 | |
| 359482642 | 1429 | PREDICTED: pleiotropic drug resistance p | 0.977 | 0.838 | 0.736 | 0.0 | |
| 297743343 | 1642 | unnamed protein product [Vitis vinifera] | 0.964 | 0.720 | 0.739 | 0.0 |
| >gi|297743362|emb|CBI36229.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1936 bits (5014), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 915/1226 (74%), Positives = 1057/1226 (86%), Gaps = 8/1226 (0%)
Query: 3 GTHDIFMASTSLRRSASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILT 62
T +I+ A+ SLRR+ S W ++ FSRSSR+EDDEEALKWAALEKLPTYNRLRKG+L
Sbjct: 2 ATAEIYRAAGSLRRNGSMWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRKGLLM 61
Query: 63 TSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYE 122
S+G A+EVDV NLG QE+Q L+++LVK+ + DNE+FLL+L+NRI+RVGI +P++EVR+E
Sbjct: 62 GSQGAASEVDVDNLGYQEKQSLMERLVKIAEEDNEKFLLRLRNRIERVGITIPEIEVRFE 121
Query: 123 HLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTL 182
HL ++AEAF+ S ALPSF F N ED L LRI+PS++R TIL DVSG+IKP R+TL
Sbjct: 122 HLTIDAEAFIGSRALPSFHNFMFNKIEDALTGLRILPSRRRKFTILHDVSGIIKPQRMTL 181
Query: 183 LLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242
LLGPPSSGKTTLLLAL+GKLDPTLKV+G VTYNGH MDEFVPQRTAAYISQHD HIGEMT
Sbjct: 182 LLGPPSSGKTTLLLALSGKLDPTLKVTGRVTYNGHGMDEFVPQRTAAYISQHDTHIGEMT 241
Query: 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYY 302
VRETLAFSARCQGVG RY+ML EL+RREKAA IKPDPD+DV+MKA ATEGQ+ NV+TDY
Sbjct: 242 VRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYT 301
Query: 303 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
LK+LGLD+CADTMVGDEMIRGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQI
Sbjct: 302 LKILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQI 361
Query: 363 VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFR 422
VNCL+Q IHI +GTAVISLLQPAPETY+LFDDIILLSDG+I+YQGPRE VLEFF S GFR
Sbjct: 362 VNCLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDGRIIYQGPREDVLEFFESTGFR 421
Query: 423 CPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPF 482
CP+RKGVADFLQEVTS+KDQ+QYWA KE+PYRFVTV+EFAEAFQSFH G+K+ DEL +P+
Sbjct: 422 CPERKGVADFLQEVTSKKDQQQYWARKEEPYRFVTVKEFAEAFQSFHTGRKVGDELASPY 481
Query: 483 DKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFL 542
DK+KSH AALTT+ YGV K+ELL AN+SRE LLMKRNSFVY+FKL Q+A +AV+ MTLFL
Sbjct: 482 DKTKSHPAALTTKKYGVNKKELLDANMSREYLLMKRNSFVYVFKLTQLAIMAVITMTLFL 541
Query: 543 RTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAI 602
RT+MHK++V DG I+ GA FF + M+ FNG +E++M IAKLPVFYKQRD F+P WAYA+
Sbjct: 542 RTEMHKNSVDDGNIYTGALFFTVVMIMFNGMAELAMAIAKLPVFYKQRDLLFYPAWAYAL 601
Query: 603 PSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGR 662
P+WILKIP++F+EV VWVF++YYV+G+D N R F+QY LLL VNQMAS LFR IA GR
Sbjct: 602 PTWILKIPITFIEVGVWVFMTYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRLIASAGR 661
Query: 663 NMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWK 722
NM+V+NTFG+F LL+LL+LGGFILS +D+KKWW W YWCSPL YAQNAIV NEFLGHSWK
Sbjct: 662 NMIVSNTFGAFVLLMLLALGGFILSHDDVKKWWIWGYWCSPLMYAQNAIVVNEFLGHSWK 721
Query: 723 KFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRA 782
K S+E+LGV VL +RGFF YWYW+G GALFGF+LL NF YTL L FL+PF+KP+A
Sbjct: 722 KNVTGSTESLGVTVLNNRGFFTEAYWYWIGAGALFGFILLFNFGYTLCLNFLNPFDKPQA 781
Query: 783 VITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAE---AEA 839
VI EE ++ E GG ++LS S + + ++I G+ SS S ++ E A A
Sbjct: 782 VIVEESDNAE----TGGQIELSQRNSSIDQAASTERGEEI-GRSISSTSSAVREEAVAGA 836
Query: 840 SRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTAL 899
+ KKKGMVLPF+P+S+TFD++ YSVDMPEEMK QGV+EDKL LL GVSGAFRPGVLTAL
Sbjct: 837 NHNKKKGMVLPFQPYSITFDDIRYSVDMPEEMKSQGVVEDKLELLKGVSGAFRPGVLTAL 896
Query: 900 MGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIY 959
MGVSGAGKTTLMDVLAGRKTGGYI GNITISGYPKKQETFARISGYCEQNDIHSP VT+Y
Sbjct: 897 MGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARISGYCEQNDIHSPHVTVY 956
Query: 960 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIA 1019
ESLL+SAWLRL +V SETR+MFI+EVMELVEL PLR +LVGLPGVSGLSTEQRKRLTIA
Sbjct: 957 ESLLYSAWLRLPSDVKSETRQMFIEEVMELVELTPLRDALVGLPGVSGLSTEQRKRLTIA 1016
Query: 1020 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 1079
VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL
Sbjct: 1017 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1076
Query: 1080 LMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDF 1139
L+KRGGQEIYVGPLGR+SCHLI+YFE I GV KIKDGYNPATWMLE + A+QE LG+DF
Sbjct: 1077 LLKRGGQEIYVGPLGRYSCHLINYFEGIEGVSKIKDGYNPATWMLEATTAAQEATLGVDF 1136
Query: 1140 TEHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPP 1199
TE YK SDLYRRNK LI++LS+PPPG+KDLYF TQFSQ + QF+ACLWKQ WSYWRNPP
Sbjct: 1137 TEIYKNSDLYRRNKDLIKELSQPPPGTKDLYFRTQFSQPFFTQFLACLWKQRWSYWRNPP 1196
Query: 1200 YTAVRFFFTAFIALLFGSLFWDLGGR 1225
YTAVRF FT FIAL+FG++FWDLG +
Sbjct: 1197 YTAVRFLFTTFIALMFGTMFWDLGTK 1222
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482991|ref|XP_003632876.1| PREDICTED: pleiotropic drug resistance protein 1 isoform 3 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1929 bits (4996), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 915/1230 (74%), Positives = 1055/1230 (85%), Gaps = 21/1230 (1%)
Query: 3 GTHDIFMASTSLRRSASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILT 62
T +I+ A+ SLRR+ S W ++ FSRSSR+EDDEEALKWAALEKLPTYNRLRKG+L
Sbjct: 2 ATAEIYRAAGSLRRNGSMWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRKGLLM 61
Query: 63 TSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYE 122
S+G A+EVDV NLG QE+Q L+++LVK+ + DNE+FLL+L+NRI+RVGI +P++EVR+E
Sbjct: 62 GSQGAASEVDVDNLGYQEKQSLMERLVKIAEEDNEKFLLRLRNRIERVGITIPEIEVRFE 121
Query: 123 HLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTL 182
HL ++AEAF+ S ALPSF F N ED L LRI+PS++R TIL DVSG+IKP R+TL
Sbjct: 122 HLTIDAEAFIGSRALPSFHNFMFNKIEDALTGLRILPSRRRKFTILHDVSGIIKPQRMTL 181
Query: 183 LLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242
LLGPPSSGKTTLLLAL+GKLDPTLKV+G VTYNGH MDEFVPQRTAAYISQHD HIGEMT
Sbjct: 182 LLGPPSSGKTTLLLALSGKLDPTLKVTGRVTYNGHGMDEFVPQRTAAYISQHDTHIGEMT 241
Query: 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYY 302
VRETLAFSARCQGVG RY+ML EL+RREKAA IKPDPD+DV+MKA ATEGQ+ NV+TDY
Sbjct: 242 VRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYT 301
Query: 303 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
LK+LGLD+CADTMVGDEMIRGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQI
Sbjct: 302 LKILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQI 361
Query: 363 VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFR 422
VNCL+Q IHI +GTAVISLLQPAPETY+LFDDIILLSDG+I+YQGPRE VLEFF S GFR
Sbjct: 362 VNCLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDGRIIYQGPREDVLEFFESTGFR 421
Query: 423 CPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPF 482
CP+RKGVADFLQEVTS+KDQ+QYWA KE+PYRFVTV+EFAEAFQSFH G+K+ DEL +P+
Sbjct: 422 CPERKGVADFLQEVTSKKDQQQYWARKEEPYRFVTVKEFAEAFQSFHTGRKVGDELASPY 481
Query: 483 DKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFL 542
DK+KSH AALTT+ YGV K+ELL AN+SRE LLMKRNSFVY+FKL Q+A +AV+ MTLFL
Sbjct: 482 DKTKSHPAALTTKKYGVNKKELLDANMSREYLLMKRNSFVYVFKLTQLAIMAVITMTLFL 541
Query: 543 RTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAI 602
RT+MHK++V DG I+ GA FF + M+ FNG +E++M IAKLPVFYKQRD F+P WAYA+
Sbjct: 542 RTEMHKNSVDDGNIYTGALFFTVVMIMFNGMAELAMAIAKLPVFYKQRDLLFYPAWAYAL 601
Query: 603 PSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGR 662
P+WILKIP++F+EV VWVF++YYV+G+D N R F+QY LLL VNQMAS LFR IA GR
Sbjct: 602 PTWILKIPITFIEVGVWVFMTYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRLIASAGR 661
Query: 663 NMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWK 722
NM+V+NTFG+F LL+LL+LGGFILS +D+KKWW W YWCSPL YAQNAIV NEFLGHSWK
Sbjct: 662 NMIVSNTFGAFVLLMLLALGGFILSHDDVKKWWIWGYWCSPLMYAQNAIVVNEFLGHSWK 721
Query: 723 KFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRA 782
K S+E+LGV VL +RGFF YWYW+G GALFGF+LL NF YTL L FL+PF+KP+A
Sbjct: 722 KNVTGSTESLGVTVLNNRGFFTEAYWYWIGAGALFGFILLFNFGYTLCLNFLNPFDKPQA 781
Query: 783 VITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQ-------SSSQSLSLA 835
VI EE ++ E GG ++LS + S+ D RG++ +SS A
Sbjct: 782 VIVEESDNAE----TGGQIELS----------QRNSSIDQRGEEIGRSISSTSSAVREEA 827
Query: 836 EAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGV 895
A A+ KKKGMVLPF+P+S+TFD++ YSVDMPEEMK QGV+EDKL LL GVSGAFRPGV
Sbjct: 828 VAGANHNKKKGMVLPFQPYSITFDDIRYSVDMPEEMKSQGVVEDKLELLKGVSGAFRPGV 887
Query: 896 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF 955
LTALMGVSGAGKTTLMDVLAGRKTGGYI GNITISGYPKKQETFARISGYCEQNDIHSP
Sbjct: 888 LTALMGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARISGYCEQNDIHSPH 947
Query: 956 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1015
VT+YESLL+SAWLRL +V SETR+MFI+EVMELVEL PLR +LVGLPGVSGLSTEQRKR
Sbjct: 948 VTVYESLLYSAWLRLPSDVKSETRQMFIEEVMELVELTPLRDALVGLPGVSGLSTEQRKR 1007
Query: 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1075
LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF
Sbjct: 1008 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1067
Query: 1076 DELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELAL 1135
DEL L+KRGGQEIYVGPLGR+SCHLI+YFE I GV KIKDGYNPATWMLE + A+QE L
Sbjct: 1068 DELLLLKRGGQEIYVGPLGRYSCHLINYFEGIEGVSKIKDGYNPATWMLEATTAAQEATL 1127
Query: 1136 GIDFTEHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYW 1195
G+DFTE YK SDLYRRNK LI++LS+PPPG+KDLYF TQFSQ + QF+ACLWKQ WSYW
Sbjct: 1128 GVDFTEIYKNSDLYRRNKDLIKELSQPPPGTKDLYFRTQFSQPFFTQFLACLWKQRWSYW 1187
Query: 1196 RNPPYTAVRFFFTAFIALLFGSLFWDLGGR 1225
RNPPYTAVRF FT FIAL+FG++FWDLG +
Sbjct: 1188 RNPPYTAVRFLFTTFIALMFGTMFWDLGTK 1217
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482993|ref|XP_002285178.2| PREDICTED: pleiotropic drug resistance protein 1 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1927 bits (4993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 914/1223 (74%), Positives = 1051/1223 (85%), Gaps = 22/1223 (1%)
Query: 3 GTHDIFMASTSLRRSASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILT 62
T +I+ A+ SLRR+ S W ++ FSRSSR+EDDEEALKWAALEKLPTYNRLRKG+L
Sbjct: 2 ATAEIYRAAGSLRRNGSMWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRKGLLM 61
Query: 63 TSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYE 122
S+G A+EVDV NLG QE+Q L+++LVK+ + DNE+FLL+L+NRI+RVGI +P++EVR+E
Sbjct: 62 GSQGAASEVDVDNLGYQEKQSLMERLVKIAEEDNEKFLLRLRNRIERVGITIPEIEVRFE 121
Query: 123 HLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTL 182
HL ++AEAF+ S ALPSF F N ED L LRI+PS++R TIL DVSG+IKP R+TL
Sbjct: 122 HLTIDAEAFIGSRALPSFHNFMFNKIEDALTGLRILPSRRRKFTILHDVSGIIKPQRMTL 181
Query: 183 LLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242
LLGPPSSGKTTLLLAL+GKLDPTLKV+G VTYNGH MDEFVPQRTAAYISQHD HIGEMT
Sbjct: 182 LLGPPSSGKTTLLLALSGKLDPTLKVTGRVTYNGHGMDEFVPQRTAAYISQHDTHIGEMT 241
Query: 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYY 302
VRETLAFSARCQGVG RY+ML EL+RREKAA IKPDPD+DV+MKA ATEGQ+ NV+TDY
Sbjct: 242 VRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYT 301
Query: 303 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
LK+LGLD+CADTMVGDEMIRGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQI
Sbjct: 302 LKILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQI 361
Query: 363 VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFR 422
VNCL+Q IHI +GTAVISLLQPAPETY+LFDDIILLSDG+I+YQGPRE VLEFF S GFR
Sbjct: 362 VNCLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDGRIIYQGPREDVLEFFESTGFR 421
Query: 423 CPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPF 482
CP+RKGVADFLQEVTS+KDQ+QYWA KE+PYRFVTV+EFAEAFQSFH G+K+ DEL +P+
Sbjct: 422 CPERKGVADFLQEVTSKKDQQQYWARKEEPYRFVTVKEFAEAFQSFHTGRKVGDELASPY 481
Query: 483 DKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFL 542
DK+KSH AALTT+ YGV K+ELL AN+SRE LLMKRNSFVY+FKL Q+A +AV+ MTLFL
Sbjct: 482 DKTKSHPAALTTKKYGVNKKELLDANMSREYLLMKRNSFVYVFKLTQLAIMAVITMTLFL 541
Query: 543 RTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAI 602
RT+MHK++V DG I+ GA FF + M+ FNG +E++M IAKLPVFYKQRD F+P WAYA+
Sbjct: 542 RTEMHKNSVDDGNIYTGALFFTVVMIMFNGMAELAMAIAKLPVFYKQRDLLFYPAWAYAL 601
Query: 603 PSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGR 662
P+WILKIP++F+EV VWVF++YYV+G+D N R F+QY LLL VNQMAS LFR IA GR
Sbjct: 602 PTWILKIPITFIEVGVWVFMTYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRLIASAGR 661
Query: 663 NMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWK 722
NM+V+NTFG+F LL+LL+LGGFILS +D+KKWW W YWCSPL YAQNAIV NEFLGHSWK
Sbjct: 662 NMIVSNTFGAFVLLMLLALGGFILSHDDVKKWWIWGYWCSPLMYAQNAIVVNEFLGHSWK 721
Query: 723 KFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRA 782
K S+E+LGV VL +RGFF YWYW+G GALFGF+LL NF YTL L FL+PF+KP+A
Sbjct: 722 KNVTGSTESLGVTVLNNRGFFTEAYWYWIGAGALFGFILLFNFGYTLCLNFLNPFDKPQA 781
Query: 783 VITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRP 842
VI EE ++ E GG ++LS R+ S D Q+ S A A A+
Sbjct: 782 VIVEESDNAET----GGQIELS---------QRNSSID---------QAASTAVAGANHN 819
Query: 843 KKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGV 902
KKKGMVLPF+P+S+TFD++ YSVDMPEEMK QGV+EDKL LL GVSGAFRPGVLTALMGV
Sbjct: 820 KKKGMVLPFQPYSITFDDIRYSVDMPEEMKSQGVVEDKLELLKGVSGAFRPGVLTALMGV 879
Query: 903 SGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL 962
SGAGKTTLMDVLAGRKTGGYI GNITISGYPKKQETFARISGYCEQNDIHSP VT+YESL
Sbjct: 880 SGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARISGYCEQNDIHSPHVTVYESL 939
Query: 963 LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL 1022
L+SAWLRL +V SETR+MFI+EVMELVEL PLR +LVGLPGVSGLSTEQRKRLTIAVEL
Sbjct: 940 LYSAWLRLPSDVKSETRQMFIEEVMELVELTPLRDALVGLPGVSGLSTEQRKRLTIAVEL 999
Query: 1023 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082
VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+K
Sbjct: 1000 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1059
Query: 1083 RGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEH 1142
RGGQEIYVGPLGR+SCHLI+YFE I GV KIKDGYNPATWMLE + A+QE LG+DFTE
Sbjct: 1060 RGGQEIYVGPLGRYSCHLINYFEGIEGVSKIKDGYNPATWMLEATTAAQEATLGVDFTEI 1119
Query: 1143 YKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTA 1202
YK SDLYRRNK LI++LS+PPPG+KDLYF TQFSQ + QF+ACLWKQ WSYWRNPPYTA
Sbjct: 1120 YKNSDLYRRNKDLIKELSQPPPGTKDLYFRTQFSQPFFTQFLACLWKQRWSYWRNPPYTA 1179
Query: 1203 VRFFFTAFIALLFGSLFWDLGGR 1225
VRF FT FIAL+FG++FWDLG +
Sbjct: 1180 VRFLFTTFIALMFGTMFWDLGTK 1202
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482989|ref|XP_003632875.1| PREDICTED: pleiotropic drug resistance protein 1 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1920 bits (4973), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 912/1223 (74%), Positives = 1049/1223 (85%), Gaps = 26/1223 (2%)
Query: 3 GTHDIFMASTSLRRSASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILT 62
T +I+ A+ SLRR+ S W ++ FSRSSR+EDDEEALKWAALEKLPTYNRLRKG+L
Sbjct: 2 ATAEIYRAAGSLRRNGSMWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRKGLLM 61
Query: 63 TSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYE 122
S+G A+EVDV NLG QE+Q L+++LVK+ + DNE+FLL+L+NRI+RVGI +P++EVR+E
Sbjct: 62 GSQGAASEVDVDNLGYQEKQSLMERLVKIAEEDNEKFLLRLRNRIERVGITIPEIEVRFE 121
Query: 123 HLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTL 182
HL ++AEAF+ S ALPSF F N ED L LRI+PS++R TIL DVSG+IKP R+TL
Sbjct: 122 HLTIDAEAFIGSRALPSFHNFMFNKIEDALTGLRILPSRRRKFTILHDVSGIIKPQRMTL 181
Query: 183 LLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242
LLGPPSSGKTTLLLAL+GKLDPTLKV+G VTYNGH MDEFVPQRTAAYISQHD HIGEMT
Sbjct: 182 LLGPPSSGKTTLLLALSGKLDPTLKVTGRVTYNGHGMDEFVPQRTAAYISQHDTHIGEMT 241
Query: 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYY 302
VRETLAFSARCQGVG RY+ML EL+RREKAA IKPDPD+DV+MKA ATEGQ+ NV+TDY
Sbjct: 242 VRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYT 301
Query: 303 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
LK+LGLD+CADTMVGDEMIRGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQI
Sbjct: 302 LKILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQI 361
Query: 363 VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFR 422
VNCL+Q IHI +GTAVISLLQPAPETY+LFDDIILLSDG+I+YQGPRE VLEFF S GFR
Sbjct: 362 VNCLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDGRIIYQGPREDVLEFFESTGFR 421
Query: 423 CPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPF 482
CP+RKGVADFLQEVTS+KDQ+QYWA KE+PYRFVTV+EFAEAFQSFH G+K+ DEL +P+
Sbjct: 422 CPERKGVADFLQEVTSKKDQQQYWARKEEPYRFVTVKEFAEAFQSFHTGRKVGDELASPY 481
Query: 483 DKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFL 542
DK+KSH AALTT+ YGV K+ELL AN+SRE LLMKRNSFVY+FKL Q+A +AV+ MTLFL
Sbjct: 482 DKTKSHPAALTTKKYGVNKKELLDANMSREYLLMKRNSFVYVFKLTQLAIMAVITMTLFL 541
Query: 543 RTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAI 602
RT+MHK++V DG I+ GA FF + M+ FNG +E++M IAKLPVFYKQRD F+P WAYA+
Sbjct: 542 RTEMHKNSVDDGNIYTGALFFTVVMIMFNGMAELAMAIAKLPVFYKQRDLLFYPAWAYAL 601
Query: 603 PSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGR 662
P+WILKIP++F+EV VWVF++YYV+G+D N R F+QY LLL VNQMAS LFR IA GR
Sbjct: 602 PTWILKIPITFIEVGVWVFMTYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRLIASAGR 661
Query: 663 NMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWK 722
NM+V+NTFG+F LL+LL+LGGFILS +D+KKWW W YWCSPL YAQNAIV NEFLGHSWK
Sbjct: 662 NMIVSNTFGAFVLLMLLALGGFILSHDDVKKWWIWGYWCSPLMYAQNAIVVNEFLGHSWK 721
Query: 723 KFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRA 782
K S+E+LGV VL +RGFF YWYW+G GALFGF+LL NF YTL L FL+PF+KP+A
Sbjct: 722 KNVTGSTESLGVTVLNNRGFFTEAYWYWIGAGALFGFILLFNFGYTLCLNFLNPFDKPQA 781
Query: 783 VITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRP 842
VI EE ++ E GG ++L S NT +R + A A A+
Sbjct: 782 VIVEESDNAET----GGQIEL------SQRNT-------VREE---------AVAGANHN 815
Query: 843 KKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGV 902
KKKGMVLPF+P+S+TFD++ YSVDMPEEMK QGV+EDKL LL GVSGAFRPGVLTALMGV
Sbjct: 816 KKKGMVLPFQPYSITFDDIRYSVDMPEEMKSQGVVEDKLELLKGVSGAFRPGVLTALMGV 875
Query: 903 SGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL 962
SGAGKTTLMDVLAGRKTGGYI GNITISGYPKKQETFARISGYCEQNDIHSP VT+YESL
Sbjct: 876 SGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARISGYCEQNDIHSPHVTVYESL 935
Query: 963 LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL 1022
L+SAWLRL +V SETR+MFI+EVMELVEL PLR +LVGLPGVSGLSTEQRKRLTIAVEL
Sbjct: 936 LYSAWLRLPSDVKSETRQMFIEEVMELVELTPLRDALVGLPGVSGLSTEQRKRLTIAVEL 995
Query: 1023 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082
VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+K
Sbjct: 996 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1055
Query: 1083 RGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEH 1142
RGGQEIYVGPLGR+SCHLI+YFE I GV KIKDGYNPATWMLE + A+QE LG+DFTE
Sbjct: 1056 RGGQEIYVGPLGRYSCHLINYFEGIEGVSKIKDGYNPATWMLEATTAAQEATLGVDFTEI 1115
Query: 1143 YKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTA 1202
YK SDLYRRNK LI++LS+PPPG+KDLYF TQFSQ + QF+ACLWKQ WSYWRNPPYTA
Sbjct: 1116 YKNSDLYRRNKDLIKELSQPPPGTKDLYFRTQFSQPFFTQFLACLWKQRWSYWRNPPYTA 1175
Query: 1203 VRFFFTAFIALLFGSLFWDLGGR 1225
VRF FT FIAL+FG++FWDLG +
Sbjct: 1176 VRFLFTTFIALMFGTMFWDLGTK 1198
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356550580|ref|XP_003543663.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1909 bits (4946), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 908/1225 (74%), Positives = 1044/1225 (85%), Gaps = 29/1225 (2%)
Query: 1 MEGTHDIFMASTSLRRSASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGI 60
MEG+ DI+ AS SLRRS++ W + + FSRSSREEDDEEALKWAALEKLPTYNRLRKG+
Sbjct: 1 MEGS-DIYRASNSLRRSSTAWRNSGVEVFSRSSREEDDEEALKWAALEKLPTYNRLRKGL 59
Query: 61 LTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVR 120
LT S G ANE+DV +LG QER +L+++LVKV + DNERFLLKLK RIDRVG+D+P +EVR
Sbjct: 60 LTASHGVANEIDVSDLGTQERHKLLERLVKVAEEDNERFLLKLKERIDRVGLDIPTIEVR 119
Query: 121 YEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRL 180
YEHLN+EAEAF+ S ALPSFI TNI E N L I SKK+H+TILKDVSG+IKP R+
Sbjct: 120 YEHLNIEAEAFVGSRALPSFINSVTNIIEGFFNLLHITTSKKKHVTILKDVSGIIKPRRM 179
Query: 181 TLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGE 240
TLLLGPPSSGKTTLLLAL+GKLD TLKVSG VTYNGH+++EFVPQRTAAYISQHD HIGE
Sbjct: 180 TLLLGPPSSGKTTLLLALSGKLDKTLKVSGRVTYNGHELNEFVPQRTAAYISQHDLHIGE 239
Query: 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITD 300
MTVRETLAFSARCQGVG+RY+ML+EL+RREKAA IKPDPD+DVYMKA ATEGQE++++TD
Sbjct: 240 MTVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDLDVYMKATATEGQESSIVTD 299
Query: 301 YYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTF 360
Y LK+LGLD+CADTMVGDEM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTTF
Sbjct: 300 YTLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTF 359
Query: 361 QIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMG 420
QIVN LRQ +HI +GTAVISLLQPAPETYDLFDDIIL+SDGQ+VY GPRE VL+FF SMG
Sbjct: 360 QIVNSLRQYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESMG 419
Query: 421 FRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRT 480
FRCP+RKGVADFLQEVTS+KDQ QYWA +++PYRFV V +FAEAFQSFH+G+K+ +EL
Sbjct: 420 FRCPERKGVADFLQEVTSKKDQAQYWARRDQPYRFVKVTQFAEAFQSFHIGRKLGEELVV 479
Query: 481 PFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTL 540
PFDK+KSH AALTT+ YG+ K+ELLKAN+SRE LLMKRNSFVYIFKL Q++ +A++ MTL
Sbjct: 480 PFDKTKSHPAALTTKKYGINKKELLKANLSREYLLMKRNSFVYIFKLCQLSIMALMTMTL 539
Query: 541 FLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAY 600
FLRT++H++ + D G+++GA FF + M+ FNG +EISMTIAKLPVFYKQRD F+P WAY
Sbjct: 540 FLRTELHRNNMDDAGLYSGALFFTLIMIMFNGMAEISMTIAKLPVFYKQRDLLFYPSWAY 599
Query: 601 AIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVT 660
AIPSWILKIPV+ LEVAVWVFL+YYV+G+D N GRFFKQY +LL + QMASALFR IA
Sbjct: 600 AIPSWILKIPVTLLEVAVWVFLTYYVIGFDPNVGRFFKQYLILLFIGQMASALFRAIAAL 659
Query: 661 GRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHS 720
GRNM+V+NTFG+FA+L L+LGG+++S+ DIK WW W YW SPL Y QNA++ NEFL +S
Sbjct: 660 GRNMIVSNTFGAFAVLTFLTLGGYVMSKNDIKNWWIWGYWISPLMYGQNALMVNEFLSNS 719
Query: 721 WKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKP 780
W ++S LGV+ L+SRGF + YWYWLGLGA+ GFVLL N ++ AL L PF+KP
Sbjct: 720 W----HNTSRNLGVEYLESRGFPSSSYWYWLGLGAMAGFVLLFNVMFSAALEILGPFDKP 775
Query: 781 RAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEAS 840
+A ITEE NE G+ ++ + S + E+S
Sbjct: 776 QATITEEESPNE------------------------GTVAEVELPRIESSGRGDSVVESS 811
Query: 841 RPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALM 900
KKKGMVLPFEPHS+TFDEV+YSVDMP+EMK QGV ED+LVLL GVSGAFRPGVLTALM
Sbjct: 812 HGKKKGMVLPFEPHSITFDEVIYSVDMPQEMKEQGVQEDRLVLLKGVSGAFRPGVLTALM 871
Query: 901 GVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960
GVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPKKQETFARISGYCEQNDIHSP VT+YE
Sbjct: 872 GVSGAGKTTLMDVLAGRKTGGYIDGSIKISGYPKKQETFARISGYCEQNDIHSPHVTVYE 931
Query: 961 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAV 1020
SLL+SAWLRL VDS+TRKMFI+EVMELVELNPLR SLVGLPGVSGLSTEQRKRLTIAV
Sbjct: 932 SLLYSAWLRLPSGVDSKTRKMFIEEVMELVELNPLRNSLVGLPGVSGLSTEQRKRLTIAV 991
Query: 1021 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1080
ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL
Sbjct: 992 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1051
Query: 1081 MKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFT 1140
MKRGGQEIYVGPLGRHS HLI YFE+I GV KIKDGYNPATWMLEV+ ++QEL+LG+DFT
Sbjct: 1052 MKRGGQEIYVGPLGRHSTHLIKYFESIGGVSKIKDGYNPATWMLEVTTSAQELSLGVDFT 1111
Query: 1141 EHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPY 1200
+ YK SDLYRRNK LI++L +P PGSKDLYFPTQ+SQS +Q ACLWKQ WSYWRNPPY
Sbjct: 1112 DLYKNSDLYRRNKQLIQELGQPAPGSKDLYFPTQYSQSFLVQCQACLWKQRWSYWRNPPY 1171
Query: 1201 TAVRFFFTAFIALLFGSLFWDLGGR 1225
TAVRFFFT FIAL+FG++FWDLG R
Sbjct: 1172 TAVRFFFTTFIALMFGTMFWDLGSR 1196
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555825|ref|XP_003546230.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1909 bits (4945), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 915/1228 (74%), Positives = 1047/1228 (85%), Gaps = 34/1228 (2%)
Query: 1 MEGTHDIFMASTSLR-RSASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKG 59
MEG+ DI+ AS SLR RS++ W + + AFSRSSREEDDEEALKWAALEKLPTYNRLRKG
Sbjct: 1 MEGS-DIYRASNSLRSRSSTVWRNSGVEAFSRSSREEDDEEALKWAALEKLPTYNRLRKG 59
Query: 60 ILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEV 119
+LT S G ANE+DV +LG+QERQ+L+++LVKV + DNERFLLKLK RIDRVG+D+P +EV
Sbjct: 60 LLTASHGVANEIDVSDLGIQERQKLLERLVKVAEEDNERFLLKLKERIDRVGLDIPTIEV 119
Query: 120 RYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGR 179
RYEHLN+EAEAF+ S ALPSFI TN+ E N L + SKK+H+TILKDVSG+IKP R
Sbjct: 120 RYEHLNIEAEAFVGSRALPSFINSVTNVVEGFFNLLHVSTSKKKHVTILKDVSGIIKPRR 179
Query: 180 LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIG 239
+TLLLGPPSSGKTTLLLAL+GKLD TLKVSG VTYNGH+++EFVPQRTAAYISQHD HIG
Sbjct: 180 MTLLLGPPSSGKTTLLLALSGKLDKTLKVSGRVTYNGHELNEFVPQRTAAYISQHDLHIG 239
Query: 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVIT 299
EMTVRETLAFSARCQGVG+RY+ML+EL+RREKAA IKPDPD+DVYMKA ATEGQE+N++T
Sbjct: 240 EMTVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDLDVYMKATATEGQESNIVT 299
Query: 300 DYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 359
DY LK+LGLD+CADTMVGDEM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 300 DYTLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTT 359
Query: 360 FQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASM 419
FQIV+ LR +HI +GTAVISLLQPAPETYDLFDDIIL+SDGQ+VY GPRE VL+FF SM
Sbjct: 360 FQIVSSLRHYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESM 419
Query: 420 GFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELR 479
GFRCP+RKGVADFLQEVTS+KDQ QYW +++PYRFVTV +FAEAFQSFH+G K+ +EL
Sbjct: 420 GFRCPERKGVADFLQEVTSKKDQAQYWVRRDQPYRFVTVTQFAEAFQSFHIGGKLGEELT 479
Query: 480 TPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMT 539
PFD++KSH AALTT+ YG+ K+ELLKAN SRE LLMKRNSFVY+FKL Q+ +A+V MT
Sbjct: 480 VPFDRTKSHPAALTTKKYGINKKELLKANFSREYLLMKRNSFVYLFKLSQLFIMALVAMT 539
Query: 540 LFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWA 599
LFLRT+MH + + D G++AGA FF + V FNG +EISMTIAKLPVFYKQR+ F+P WA
Sbjct: 540 LFLRTEMHHENMDDAGVYAGAVFFMLITVMFNGLAEISMTIAKLPVFYKQRNLLFYPSWA 599
Query: 600 YAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAV 659
YAIPSWILKIPV+ +EVAVWVFL+YYV+G+D N GRFFKQY +LL V+QMAS LFR IA
Sbjct: 600 YAIPSWILKIPVTIVEVAVWVFLTYYVIGFDPNVGRFFKQYLVLLIVSQMASGLFRTIAA 659
Query: 660 TGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGH 719
GRNM+VANTFG+FA++ +++LGGFILS+ DIK WW W YW SPL Y QNA++ NEFL +
Sbjct: 660 LGRNMIVANTFGAFAIITVVALGGFILSKRDIKSWWIWGYWISPLMYGQNALMVNEFLSN 719
Query: 720 SWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEK 779
SW +++ LGV+ L+SR FF YWYWLGLGAL GFV L N + LAL FL PF+K
Sbjct: 720 SW----HNATHNLGVEYLESRAFFTDSYWYWLGLGALVGFVFLFNVMFGLALEFLGPFDK 775
Query: 780 PRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIR--GQQSSSQSLSLAEA 837
P+A ITE+ SNE G+ DI G +SS + SL
Sbjct: 776 PQATITEDESSNE------------------------GTLADIELPGIESSGRGDSL--V 809
Query: 838 EASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLT 897
E+S KKKGMVLPFEPHS+TFDEVVYSVDMP+EMK QGV ED+LVLL GVSGAFRPGVLT
Sbjct: 810 ESSHGKKKGMVLPFEPHSITFDEVVYSVDMPQEMKEQGVQEDRLVLLKGVSGAFRPGVLT 869
Query: 898 ALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 957
ALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISGYPKKQETFARISGYCEQNDIHSP VT
Sbjct: 870 ALMGVSGAGKTTLMDVLAGRKTGGYIDGSIKISGYPKKQETFARISGYCEQNDIHSPHVT 929
Query: 958 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLT 1017
+YESLL+SAWLRL VDS+TRKMFI+EVMELVELNP+R SLVGLPGVSGLSTEQRKRLT
Sbjct: 930 VYESLLYSAWLRLPSSVDSKTRKMFIEEVMELVELNPVRNSLVGLPGVSGLSTEQRKRLT 989
Query: 1018 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1077
IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE
Sbjct: 990 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1049
Query: 1078 LFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGI 1137
LFLMKRGGQEIYVGPLGRHS HLI YFE+I GV KIKDGYNPATWMLEV+A +QEL+LG+
Sbjct: 1050 LFLMKRGGQEIYVGPLGRHSSHLIKYFESIEGVSKIKDGYNPATWMLEVTATAQELSLGV 1109
Query: 1138 DFTEHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRN 1197
DFT+ YK SDLYRRNK LI++L +P PGSKDL+FPTQ+SQS +Q ACLWKQ WSYWRN
Sbjct: 1110 DFTDLYKNSDLYRRNKQLIQELGQPAPGSKDLHFPTQYSQSFLVQCQACLWKQRWSYWRN 1169
Query: 1198 PPYTAVRFFFTAFIALLFGSLFWDLGGR 1225
PPYTAVRFFFT FIAL+FG++FWDLGG+
Sbjct: 1170 PPYTAVRFFFTTFIALMFGTIFWDLGGK 1197
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555801|ref|XP_003546218.1| PREDICTED: pleiotropic drug resistance protein 1-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1908 bits (4942), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 912/1225 (74%), Positives = 1044/1225 (85%), Gaps = 29/1225 (2%)
Query: 1 MEGTHDIFMASTSLRRSASRWNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGI 60
MEG+ DI+ AS SLRRS++ W + + FSRSSREEDDEEALKWAALEKLPTYNRLRKG+
Sbjct: 1 MEGS-DIYRASNSLRRSSTVWRNSGVEVFSRSSREEDDEEALKWAALEKLPTYNRLRKGL 59
Query: 61 LTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVR 120
LT S G ANE+DV +LG+QERQ+L+++LVKV + DNERFLLKLK RIDRVG+D+P +EVR
Sbjct: 60 LTASHGVANEIDVSDLGIQERQKLLERLVKVAEEDNERFLLKLKERIDRVGLDIPTIEVR 119
Query: 121 YEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRL 180
YEHLN+EAEAF+ S ALPSFI TN+ E N L I SKK+H+TILKDVSG+IKP R+
Sbjct: 120 YEHLNIEAEAFVGSRALPSFINSVTNVVEGFFNLLHISTSKKKHVTILKDVSGIIKPRRM 179
Query: 181 TLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGE 240
TLLLGPPSSGKTTLLLAL+GKLD TLKVSG VTYNGH+++EFVPQRTAAYISQHD HIGE
Sbjct: 180 TLLLGPPSSGKTTLLLALSGKLDKTLKVSGRVTYNGHELNEFVPQRTAAYISQHDLHIGE 239
Query: 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITD 300
MTVRETLAFSARCQGVG+RY+ML+EL+RREKAA IKPDPD+DVYMKA ATEGQE++++TD
Sbjct: 240 MTVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDLDVYMKATATEGQESSLVTD 299
Query: 301 YYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTF 360
Y LK+LGLD+CADTMVGDEM+RGISGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTTF
Sbjct: 300 YTLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTF 359
Query: 361 QIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMG 420
QIV+ LRQ +HI +GTAVISLLQPAPETYDLFDDIIL+SDGQ+VY GPRE VL+FF SMG
Sbjct: 360 QIVSFLRQYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESMG 419
Query: 421 FRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRT 480
FRCP+RKGVADFLQEVTS+KDQ QYWA +++PYRFVTV +F+EAFQSFH+G K+ +EL
Sbjct: 420 FRCPERKGVADFLQEVTSKKDQAQYWARRDQPYRFVTVTQFSEAFQSFHIGGKLGEELAV 479
Query: 481 PFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTL 540
PFDK+KSH AALTT+ YG+ K+ELLKAN+SRE LLMKRNSFVYIFKL Q++ +A++ MTL
Sbjct: 480 PFDKTKSHPAALTTKKYGINKKELLKANLSREYLLMKRNSFVYIFKLCQLSIMALMTMTL 539
Query: 541 FLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAY 600
FLRT++H++ + D G++AGA FF + M+ FNG +EISMTIAKLPVFYKQRD F+P WAY
Sbjct: 540 FLRTELHRNNMDDAGLYAGALFFTLVMIMFNGMAEISMTIAKLPVFYKQRDLLFYPSWAY 599
Query: 601 AIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVT 660
AIPSWILKIPV+ LEVAVWVFL+YYV+G+D N GR FKQY +LL + QMASALFR IA
Sbjct: 600 AIPSWILKIPVTLLEVAVWVFLTYYVIGFDPNVGRLFKQYLILLFIGQMASALFRAIAAL 659
Query: 661 GRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHS 720
GRNM+V+NTFG+FA+L L+LGGF++++ DIK WW W YW SPL Y Q A++ NEFL +S
Sbjct: 660 GRNMIVSNTFGAFAVLTFLTLGGFVMAKSDIKNWWIWGYWISPLMYGQTALMVNEFLSNS 719
Query: 721 WKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKP 780
W +SS LGV+ L+SRGF + YWYWLGLGA+ GFVLL N ++ AL L PF+KP
Sbjct: 720 W----HNSSRNLGVEYLESRGFPSSAYWYWLGLGAMAGFVLLFNVMFSAALEILGPFDKP 775
Query: 781 RAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEAS 840
+A I EE NE V+L + S R GS E+S
Sbjct: 776 QATIAEEESPNEVTV---AEVELPRIESSG----RGGSV-----------------VESS 811
Query: 841 RPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALM 900
KKKGMVLPFEPHS+TFDEVVYSVDMP+EMK QGV ED+LVLL GVSGAFRPGVLTALM
Sbjct: 812 HGKKKGMVLPFEPHSITFDEVVYSVDMPQEMKEQGVQEDRLVLLKGVSGAFRPGVLTALM 871
Query: 901 GVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960
GVSGAGKTTLMDVLAGRKTGGYI GNI ISGYPKKQETFARISGYCEQNDIHSP VT+YE
Sbjct: 872 GVSGAGKTTLMDVLAGRKTGGYIDGNIKISGYPKKQETFARISGYCEQNDIHSPHVTVYE 931
Query: 961 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAV 1020
SLL+SAWLRL VDS+TRKMFI+EVMELVELNPLR SLVGLPGVSGLSTEQRKRLTIAV
Sbjct: 932 SLLYSAWLRLPSSVDSQTRKMFIEEVMELVELNPLRNSLVGLPGVSGLSTEQRKRLTIAV 991
Query: 1021 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1080
ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL
Sbjct: 992 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1051
Query: 1081 MKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFT 1140
MKRGGQEIYVGPLGRHS HLI YFE+I GV KIKDGYNPATWMLEV+ ++QEL+LG+DFT
Sbjct: 1052 MKRGGQEIYVGPLGRHSSHLIKYFESIEGVSKIKDGYNPATWMLEVTTSAQELSLGVDFT 1111
Query: 1141 EHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPY 1200
+ YK SDLYRRNK LI++L +P PGSKDLYFPTQ+SQS +Q ACLWKQ WSYWRNPPY
Sbjct: 1112 DLYKNSDLYRRNKQLIQELGQPAPGSKDLYFPTQYSQSFLVQCQACLWKQRWSYWRNPPY 1171
Query: 1201 TAVRFFFTAFIALLFGSLFWDLGGR 1225
TAVRFFFT FIAL+FG++FWDLG R
Sbjct: 1172 TAVRFFFTTFIALMFGTMFWDLGSR 1196
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543331|ref|XP_002512728.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223547739|gb|EEF49231.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1899 bits (4919), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 909/1229 (73%), Positives = 1050/1229 (85%), Gaps = 30/1229 (2%)
Query: 1 MEGTHDIFMASTSLRRS-ASRWNTNSIGAFSRSSR--EEDDEEALKWAALEKLPTYNRLR 57
MEGT ++++A SLRR +S W +N++ FS+SSR E+DDEEALKWAA+E+LPTY+RL+
Sbjct: 1 MEGT-ELYIAGGSLRRGESSIWRSNAMEGFSKSSRGDEDDDEEALKWAAIERLPTYDRLK 59
Query: 58 KGILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKV 117
KG+LTTS+GEANE+DV NLG E++ L+D+LVKV + DNE FLLKLKNRIDRVGI+LP +
Sbjct: 60 KGLLTTSKGEANEIDVKNLGFHEKRTLLDRLVKVAEEDNELFLLKLKNRIDRVGIELPMI 119
Query: 118 EVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKP 177
EVR+EHLNVE EA + S ALP+F F +I E LN+L I+PS K+ L+IL+DVSG+IKP
Sbjct: 120 EVRFEHLNVETEAHVGSRALPTFFNFSIDIVEGFLNFLHILPSGKKSLSILQDVSGIIKP 179
Query: 178 GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNH 237
R+TLLLGPPSSGKTTLLLALAGKLDP LK SG VTYNGH+M+EFVPQRTAAYISQHD H
Sbjct: 180 KRMTLLLGPPSSGKTTLLLALAGKLDPKLKFSGRVTYNGHEMNEFVPQRTAAYISQHDTH 239
Query: 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANV 297
IGEMTVRETLAF+ARCQGVG RYEM++EL RREKA+ IKPDPDIDV+MKA+ATEGQEANV
Sbjct: 240 IGEMTVRETLAFAARCQGVGHRYEMISELLRREKASNIKPDPDIDVFMKAMATEGQEANV 299
Query: 298 ITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSS 357
+TDY LK+LGL+VCAD MVG+EM+RG+SGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSS
Sbjct: 300 VTDYILKILGLEVCADIMVGNEMLRGVSGGQRKRVTTGEMLVGPAKALFMDEISTGLDSS 359
Query: 358 TTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFA 417
TT+QIVN ++Q IHI +GTAVISLLQP PETY+LFDDIILLSDGQIVYQGPRE VLEFF
Sbjct: 360 TTYQIVNSIKQYIHILNGTAVISLLQPPPETYNLFDDIILLSDGQIVYQGPRENVLEFFE 419
Query: 418 SMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDE 477
MGF+CP+RKGVADFLQEVTSRKDQ QYWA K+KPY FVTV+EFAEAFQSF VG+++ E
Sbjct: 420 YMGFKCPERKGVADFLQEVTSRKDQAQYWADKDKPYSFVTVREFAEAFQSFLVGRRLEAE 479
Query: 478 LRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVY 537
L TPFDKSKSH AALTT+ YGVGK ELLKA SRE+LLMKRNSFVYIFKL Q+ +A+V
Sbjct: 480 LSTPFDKSKSHPAALTTKKYGVGKMELLKACFSREILLMKRNSFVYIFKLTQLTIMAMVA 539
Query: 538 MTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPP 597
MTLFLRT+MH+D+VT+GGI+ GA FF++ + FNG SEIS+TIAKLPVFYKQR F+PP
Sbjct: 540 MTLFLRTEMHRDSVTNGGIYVGALFFSVVFIMFNGLSEISLTIAKLPVFYKQRSLLFYPP 599
Query: 598 WAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFI 657
WA+++P WI KIP++ ++VA+WVFL+YYV+G+D N GRFFKQY LL V+QMAS LFRFI
Sbjct: 600 WAFSLPPWITKIPITLVQVAIWVFLTYYVIGFDPNVGRFFKQYLLLALVSQMASGLFRFI 659
Query: 658 AVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFL 717
A GRNM+VANTFGSFALL L +LGGFILSR++IKKWW W YW SPL Y QNAIV NEFL
Sbjct: 660 AAAGRNMIVANTFGSFALLALFALGGFILSRDNIKKWWIWGYWISPLMYGQNAIVVNEFL 719
Query: 718 GHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPF 777
G+SW K D++ETLG+QVL+SRGFF H YWYW+G+GAL GF LL NF +TLALTFL P
Sbjct: 720 GNSWNKVLPDTTETLGIQVLESRGFFTHAYWYWIGVGALVGFTLLYNFFFTLALTFLGPL 779
Query: 778 EKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEA 837
+KP+AVI+E+ SN + G +QLS++ T+ I
Sbjct: 780 QKPQAVISEDSASN-TSGKTGEVIQLSSV-----------RTELI--------------V 813
Query: 838 EASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLT 897
E + K+KGMVLPFEPHS+TF+++ YSVDMP+EMK QG ED+L LL GVSGAFRPGVLT
Sbjct: 814 EENHQKQKGMVLPFEPHSITFNDIRYSVDMPQEMKRQGATEDRLELLRGVSGAFRPGVLT 873
Query: 898 ALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 957
ALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISG+PKKQETFARISGYCEQNDIHSP VT
Sbjct: 874 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPHVT 933
Query: 958 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLT 1017
+YESLL+S+WLRL PEV+SETRKMFI+EVMELVEL PLRQ+LVGLPGVSGLSTEQRKRLT
Sbjct: 934 VYESLLYSSWLRLPPEVNSETRKMFIEEVMELVELTPLRQALVGLPGVSGLSTEQRKRLT 993
Query: 1018 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1077
IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE
Sbjct: 994 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1053
Query: 1078 LFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGI 1137
L LMKRGGQEIYVGPLGRHSC LI YFEAI GV IKDGYNPATWMLEVS+++QE+ LG+
Sbjct: 1054 LLLMKRGGQEIYVGPLGRHSCQLIKYFEAIEGVPDIKDGYNPATWMLEVSSSAQEMVLGL 1113
Query: 1138 DFTEHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRN 1197
DF YK S+LYRRNKALIE+LS PP GS DLYFPTQ+SQS + Q +ACLWKQHWSYWRN
Sbjct: 1114 DFAAIYKNSELYRRNKALIEELSTPPLGSNDLYFPTQYSQSFFTQCMACLWKQHWSYWRN 1173
Query: 1198 PPYTAVRFFFTAFIALLFGSLFWDLGGRT 1226
PPYTAVRF FT IAL+FG++FWDLG +T
Sbjct: 1174 PPYTAVRFLFTTVIALMFGTMFWDLGSKT 1202
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482642|ref|XP_002285020.2| PREDICTED: pleiotropic drug resistance protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1895 bits (4910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 902/1224 (73%), Positives = 1041/1224 (85%), Gaps = 26/1224 (2%)
Query: 3 GTHDIFMASTSLRRSASR-WNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGIL 61
T D + AS SLRR+ S W ++ FSRSSR+EDDEEALKWAALEKLPTYNRLR+G+L
Sbjct: 2 ATADTYRASGSLRRNGSSIWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRRGLL 61
Query: 62 TTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRY 121
S GEA+E+D++NLG QE++ L+++LVKV + DNE+FLLKLKNRIDRVGID+P++EVR+
Sbjct: 62 MGSEGEASEIDIHNLGFQEKKNLVERLVKVAEEDNEKFLLKLKNRIDRVGIDVPEIEVRF 121
Query: 122 EHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLT 181
EHL ++AEAF+ S ALPSF F N E ILN +RI+PSKKR TIL DVSG+IKP RLT
Sbjct: 122 EHLTIDAEAFVGSRALPSFHNFIFNKLEGILNAVRILPSKKRKFTILNDVSGIIKPRRLT 181
Query: 182 LLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 241
LLLGPPSSGKTTLLLALAGKLDP LKV G VTYNGH M+EFVPQRTAAYISQHD HIGEM
Sbjct: 182 LLLGPPSSGKTTLLLALAGKLDPNLKVMGRVTYNGHGMNEFVPQRTAAYISQHDTHIGEM 241
Query: 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDY 301
TVRETLAFSARCQGVG RY+ML EL+RREKAA IKPDPD+DV+MKA ATEGQ+ NV+TDY
Sbjct: 242 TVRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDY 301
Query: 302 YLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ 361
LK+LGLD+CADTMVGDEMIRGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQ
Sbjct: 302 TLKILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQ 361
Query: 362 IVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGF 421
I+N L+Q IHI +GTAVISLLQPAPETY+LFDDIILLSD QIVYQGPRE VLEFF S+GF
Sbjct: 362 IINSLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDSQIVYQGPREDVLEFFESIGF 421
Query: 422 RCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTP 481
+CP+RKG ADFLQEVTSRKDQ QYWA K+ PY FVTV+EFAEAFQSFH+G+K++DEL +P
Sbjct: 422 KCPERKGEADFLQEVTSRKDQAQYWARKDVPYSFVTVKEFAEAFQSFHIGRKVADELASP 481
Query: 482 FDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLF 541
FD++KSH AALTT+ YGV K+ELL AN+SRE LLMKRNSFVYIFKL Q+A VAV+ MTLF
Sbjct: 482 FDRAKSHPAALTTKKYGVRKKELLDANMSREYLLMKRNSFVYIFKLTQLAVVAVIAMTLF 541
Query: 542 LRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYA 601
LRT+M+K++ DG I+ GA FF + M+ FNG +E++MTIAKLPVFYKQRDF F+P WAYA
Sbjct: 542 LRTEMNKNSTEDGSIYTGALFFTVVMIMFNGMAELAMTIAKLPVFYKQRDFLFYPAWAYA 601
Query: 602 IPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTG 661
+P+W+LKIP++F+EVAVWVF++YYV+G+D N R F+QY LLL VNQMAS LFRFIA G
Sbjct: 602 LPTWVLKIPITFVEVAVWVFITYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRFIAAAG 661
Query: 662 RNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW 721
RNM+VA+TFG+FA+L+L++LGGFILS +++KKWW W YW SPL YAQNAIV NEFLG SW
Sbjct: 662 RNMIVASTFGAFAVLMLMALGGFILSHDNVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSW 721
Query: 722 KKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPR 781
K +S+E+LG+ VLKSRGFF +WYW+G GAL GF+ + NF YTL L +L+PFEKP+
Sbjct: 722 SKNVTNSTESLGITVLKSRGFFTDAHWYWIGAGALLGFIFVFNFFYTLCLNYLNPFEKPQ 781
Query: 782 AVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASR 841
AVITEE + N ++ +T D + + + A AE +
Sbjct: 782 AVITEE-----------------------SDNAKTATTGD--ETHTWGEHMVEAIAEGNH 816
Query: 842 PKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMG 901
KKKGMVLPF+PHS+TFD++ YSVDMPEEMK QG LED+L LL GVSGAFRPGVLTALMG
Sbjct: 817 NKKKGMVLPFQPHSITFDDIRYSVDMPEEMKSQGALEDRLELLKGVSGAFRPGVLTALMG 876
Query: 902 VSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 961
VSGAGKTTLMDVLAGRKTGGYI GNI+ISGYPKKQETFARISGYCEQNDIHSP VT++ES
Sbjct: 877 VSGAGKTTLMDVLAGRKTGGYIEGNISISGYPKKQETFARISGYCEQNDIHSPHVTVHES 936
Query: 962 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVE 1021
LL+SAWLRL +V+SETRKMFI+EVMELVEL PLR +LVGLPGV+GLSTEQRKRLTIAVE
Sbjct: 937 LLYSAWLRLPSDVNSETRKMFIEEVMELVELTPLRDALVGLPGVNGLSTEQRKRLTIAVE 996
Query: 1022 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081
LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL LM
Sbjct: 997 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1056
Query: 1082 KRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTE 1141
KRGGQEIYVGPLGRHS HLI+YFE I GV KIKDGYNPATWMLEV+ +QE LG+DFTE
Sbjct: 1057 KRGGQEIYVGPLGRHSSHLINYFEGIEGVSKIKDGYNPATWMLEVTTGAQEGTLGVDFTE 1116
Query: 1142 HYKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYT 1201
YK SDLYRRNK LI++LS+P PG+KDLYF TQ+SQ + QF+ACLWKQ WSYWRNPPYT
Sbjct: 1117 IYKNSDLYRRNKDLIKELSQPAPGTKDLYFATQYSQPFFTQFLACLWKQRWSYWRNPPYT 1176
Query: 1202 AVRFFFTAFIALLFGSLFWDLGGR 1225
AVRF FT FIAL+FG +FWDLG R
Sbjct: 1177 AVRFLFTTFIALMFGLIFWDLGTR 1200
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743343|emb|CBI36210.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1890 bits (4895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 900/1217 (73%), Positives = 1036/1217 (85%), Gaps = 34/1217 (2%)
Query: 10 ASTSLRRSASR-WNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILTTSRGEA 68
AS SLRR+ S W ++ FSRSSR+EDDEEALKWAALEKLPTYNRLR+G+L S GEA
Sbjct: 230 ASGSLRRNGSSIWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRRGLLMGSEGEA 289
Query: 69 NEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEA 128
+E+D++NLG QE++ L+++LVKV + DNE+FLLKLKNRIDRVGID+P++EVR+EHL ++A
Sbjct: 290 SEIDIHNLGFQEKKNLVERLVKVAEEDNEKFLLKLKNRIDRVGIDVPEIEVRFEHLTIDA 349
Query: 129 EAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPS 188
EAF+ S ALPSF F N E ILN +RI+PSKKR TIL DVSG+IKP RLTLLLGPPS
Sbjct: 350 EAFVGSRALPSFHNFIFNKLEGILNAVRILPSKKRKFTILNDVSGIIKPRRLTLLLGPPS 409
Query: 189 SGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLA 248
SGKTTLLLALAGKLDP LKV G VTYNGH M+EFVPQRTAAYISQHD HIGEMTVRETLA
Sbjct: 410 SGKTTLLLALAGKLDPNLKVMGRVTYNGHGMNEFVPQRTAAYISQHDTHIGEMTVRETLA 469
Query: 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308
FSARCQGVG RY+ML EL+RREKAA IKPDPD+DV+MKA ATEGQ+ NV+TDY LK+LGL
Sbjct: 470 FSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYTLKILGL 529
Query: 309 DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 368
D+CADTMVGDEMIRGISGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQI+N L+Q
Sbjct: 530 DICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIINSLKQ 589
Query: 369 NIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKG 428
IHI +GTAVISLLQPAPETY+LFDDIILLSD QIVYQGPRE VLEFF S+GF+CP+RKG
Sbjct: 590 TIHILNGTAVISLLQPAPETYNLFDDIILLSDSQIVYQGPREDVLEFFESIGFKCPERKG 649
Query: 429 VADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSH 488
ADFLQEVTSRKDQ QYWA K+ PY FVTV+EFAEAFQSFH+G+K++DEL +PFD++KSH
Sbjct: 650 EADFLQEVTSRKDQAQYWARKDVPYSFVTVKEFAEAFQSFHIGRKVADELASPFDRAKSH 709
Query: 489 RAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHK 548
AALTT+ YGV K+ELL AN+SRE LLMKRNSFVYIFKL Q+A VAV+ MTLFLRT+M+K
Sbjct: 710 PAALTTKKYGVRKKELLDANMSREYLLMKRNSFVYIFKLTQLAVVAVIAMTLFLRTEMNK 769
Query: 549 DTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILK 608
++ DG I+ GA FF + M+ FNG +E++MTIAKLPVFYKQRDF F+P WAYA+P+W+LK
Sbjct: 770 NSTEDGSIYTGALFFTVVMIMFNGMAELAMTIAKLPVFYKQRDFLFYPAWAYALPTWVLK 829
Query: 609 IPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVAN 668
IP++F+EVAVWVF++YYV+G+D N R F+QY LLL VNQMAS LFRFIA GRNM+VA+
Sbjct: 830 IPITFVEVAVWVFITYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRFIAAAGRNMIVAS 889
Query: 669 TFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDS 728
TFG+FA+L+L++LGGFILS +++KKWW W YW SPL YAQNAIV NEFLG SW K +S
Sbjct: 890 TFGAFAVLMLMALGGFILSHDNVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSKNVTNS 949
Query: 729 SETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEI 788
+E+LG+ VLKSRGFF +WYW+G GAL GF+ + NF YTL L +L+PFEKP+AVITEE
Sbjct: 950 TESLGITVLKSRGFFTDAHWYWIGAGALLGFIFVFNFFYTLCLNYLNPFEKPQAVITEE- 1008
Query: 789 ESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMV 848
S N T ++++ + A AE + KKKGMV
Sbjct: 1009 --------------------SDNAKT------------ATTEHMVEAIAEGNHNKKKGMV 1036
Query: 849 LPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 908
LPF+PHS+TFD++ YSVDMPEEMK QG LED+L LL GVSGAFRPGVLTALMGVSGAGKT
Sbjct: 1037 LPFQPHSITFDDIRYSVDMPEEMKSQGALEDRLELLKGVSGAFRPGVLTALMGVSGAGKT 1096
Query: 909 TLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWL 968
TLMDVLAGRKTGGYI GNI+ISGYPKKQETFARISGYCEQNDIHSP VT++ESLL+SAWL
Sbjct: 1097 TLMDVLAGRKTGGYIEGNISISGYPKKQETFARISGYCEQNDIHSPHVTVHESLLYSAWL 1156
Query: 969 RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1028
RL +V+SETRKMFI+EVMELVEL PLR +LVGLPGV+GLSTEQRKRLTIAVELVANPSI
Sbjct: 1157 RLPSDVNSETRKMFIEEVMELVELTPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSI 1216
Query: 1029 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088
IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGGQEI
Sbjct: 1217 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQEI 1276
Query: 1089 YVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDL 1148
YVGPLGRHS HLI+YFE I GV KIKDGYNPATWMLEV+ +QE LG+DFTE YK SDL
Sbjct: 1277 YVGPLGRHSSHLINYFEGIEGVSKIKDGYNPATWMLEVTTGAQEGTLGVDFTEIYKNSDL 1336
Query: 1149 YRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFT 1208
YRRNK LI++LS+P PG+KDLYF TQ+SQ + QF+ACLWKQ WSYWRNPPYTAVRF FT
Sbjct: 1337 YRRNKDLIKELSQPAPGTKDLYFATQYSQPFFTQFLACLWKQRWSYWRNPPYTAVRFLFT 1396
Query: 1209 AFIALLFGSLFWDLGGR 1225
FIAL+FG +FWDLG R
Sbjct: 1397 TFIALMFGLIFWDLGTR 1413
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1226 | ||||||
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.980 | 0.818 | 0.561 | 0.0 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.646 | 0.556 | 0.602 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.632 | 0.533 | 0.515 | 0.0 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.632 | 0.534 | 0.522 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.618 | 0.525 | 0.536 | 0.0 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.630 | 0.544 | 0.487 | 0.0 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.613 | 0.531 | 0.515 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.611 | 0.525 | 0.470 | 0.0 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.606 | 0.525 | 0.471 | 0.0 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.603 | 0.510 | 0.482 | 0.0 |
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3527 (1246.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 689/1226 (56%), Positives = 871/1226 (71%)
Query: 13 SLRRSASRWNTNSIGAFXXXXXXXXXXX----ALKWAALEKLPTYNRLRKGILTT----- 63
S+ RS SR + N F ALKWAA+EKLPTY+RLR ++
Sbjct: 20 SISRSVSRASRNIEDIFSSGSRRTQSVNDDEEALKWAAIEKLPTYSRLRTTLMNAVVEDD 79
Query: 64 ---SRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVR 120
++ + EVDV L ++RQ+ ID + KV + DNER L KL+NRIDRVGI LP VEVR
Sbjct: 80 VYGNQLMSKEVDVTKLDGEDRQKFIDMVFKVAEQDNERILTKLRNRIDRVGIKLPTVEVR 139
Query: 121 YEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRL 180
YEHL ++A+ + + +LP+ + N+ E L + I +KK LTILKD+SGVIKPGR+
Sbjct: 140 YEHLTIKADCYTGNRSLPTLLNVVRNMGESALGMIGIQFAKKAQLTILKDISGVIKPGRM 199
Query: 181 TLLLGPPXXXXXXXXXXXXXXXDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGE 240
TLLLGPP D +L+VSG +TYNG+ +DEFVP++T+AYISQ+D H+G
Sbjct: 200 TLLLGPPSSGKTTLLLALAGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVGI 259
Query: 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITD 300
MTV+ETL FSARCQGVGTRY++L ELARREK AGI P+ D+D++MKA A +G + +++TD
Sbjct: 260 MTVKETLDFSARCQGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKNSLVTD 319
Query: 301 YYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTF 360
Y LK+LGLD+C DT+VGD+M+RGISGGQKKRVTTGEM+VGP LFMDEISTGLDSSTTF
Sbjct: 320 YTLKILGLDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTF 379
Query: 361 QIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMG 420
QIV CL+Q +H+N T ++SLLQPAPET+DLFDDIIL+S+GQIVYQGPR+ +LEFF S G
Sbjct: 380 QIVKCLQQIVHLNEATVLMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESFG 439
Query: 421 FRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRT 480
F+CP+RKG ADFLQEVTS+KDQ QYW + +PY ++ V EFA ++SFHVG K+S+EL
Sbjct: 440 FKCPERKGTADFLQEVTSKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELAV 499
Query: 481 PFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTL 540
PFDKS+ H+AAL + Y V KRELLK+ +E LLM+RN+F Y+FK +QI +A + TL
Sbjct: 500 PFDKSRGHKAALVFDKYSVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITSTL 559
Query: 541 FLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAY 600
FLRT+M+ D ++ GA F + + FNGF+E++M +++LPVFYKQRD F+P W +
Sbjct: 560 FLRTEMNTRNEGDANLYIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWTF 619
Query: 601 AIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVT 660
++P+++L IP S LE W+ ++YY +G+ +A RFFKQ+ L+ + QMA++LFR IA
Sbjct: 620 SLPTFLLGIPSSILESTAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIASV 679
Query: 661 GRNMVVANTXXXXXXXXXXXXXXXXXXREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHS 720
R M++ANT + I WW WAYW SPLTYA N +V NE
Sbjct: 680 CRTMMIANTGGALTLLLVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAPR 739
Query: 721 W--KKFTQDSSETLGVQVLKSRGFFAHEYWYWXXXXXXXXXXXXXXXAYTLALTFLDPFE 778
W K + +S+ LG VL + + + WYW +TLALT+L+P
Sbjct: 740 WMNKMASSNSTIKLGTMVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPLG 799
Query: 779 KPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGXXXXXXXXXXXXXX 838
K ++ EE NE D+ G + +L S+ R G G
Sbjct: 800 KKAGLLPEE--ENEDADQ-GKDPMRRSL--STADGNRRGEV--AMGRMSRDSAAEASGGA 852
Query: 839 XXRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTA 898
KKGMVLPF P +++FD+V Y VDMP EM+ QGV E +L LL GV+GAFRPGVLTA
Sbjct: 853 G---NKKGMVLPFTPLAMSFDDVKYFVDMPGEMRDQGVTETRLQLLKGVTGAFRPGVLTA 909
Query: 899 LMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 958
LMGVSGAGKTTLMDVLAGRKTGGYI G++ ISG+PK QETFARISGYCEQ DIHSP VT+
Sbjct: 910 LMGVSGAGKTTLMDVLAGRKTGGYIEGDVRISGFPKVQETFARISGYCEQTDIHSPQVTV 969
Query: 959 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTI 1018
ESL+FSA+LRL EV + + MF+D+VMELVEL+ LR S+VGLPGV+GLSTEQRKRLTI
Sbjct: 970 RESLIFSAFLRLPKEVGKDEKMMFVDQVMELVELDSLRDSIVGLPGVTGLSTEQRKRLTI 1029
Query: 1019 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1078
AVELVANPSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDEL
Sbjct: 1030 AVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1089
Query: 1079 FLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGID 1138
LMKRGGQ IY GPLG++S ++ YFE+ PGV KI + YNPATWMLE S+ + EL L +D
Sbjct: 1090 MLMKRGGQVIYAGPLGQNSHKVVEYFESFPGVSKIPEKYNPATWMLEASSLAAELKLSVD 1149
Query: 1139 FTEHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNP 1198
F E Y +S L++RNKAL+++LS PP G+ DLYF TQFSQ++W QF +CLWKQ W+YWR+P
Sbjct: 1150 FAELYNQSALHQRNKALVKELSVPPAGASDLYFATQFSQNTWGQFKSCLWKQWWTYWRSP 1209
Query: 1199 PYTAVRFFFTAFIALLFGSLFWDLGG 1224
Y VRF FT +LL G++FW +GG
Sbjct: 1210 DYNLVRFIFTLATSLLIGTVFWQIGG 1235
|
|
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2563 (907.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 481/798 (60%), Positives = 601/798 (75%)
Query: 1 MEGTHDIFMASTSLRRSASRWNTNSIGA--FXXXXXXXXXXXALKWAALEKLPTYNRLRK 58
MEGT AS S+RR++S W +S G F AL+WAALEKLPT++RLRK
Sbjct: 1 MEGT-SFHQASNSMRRNSSVWKKDS-GREIFSRSSREEDDEEALRWAALEKLPTFDRLRK 58
Query: 59 GILTTSR--GEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPK 116
GILT S G NE+D+ LG Q+ ++L+++L+KV D ++E+ L KLK RIDRVGIDLP
Sbjct: 59 GILTASHAGGPINEIDIQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPT 118
Query: 117 VEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIK 176
+EVR++HL VEAE + ALP+F+ F +N + LN L ++P++K+ TIL DVSG++K
Sbjct: 119 IEVRFDHLKVEAEVHVGGRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVK 178
Query: 177 PGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDN 236
PGR+ LLLGPP D LK +G VTYNGH M+EFVPQRTAAYI Q+D
Sbjct: 179 PGRMALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDV 238
Query: 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEAN 296
HIGEMTVRET A++AR QGVG+RY+MLTELARREK A IKPDPDID++MKA++T G++ N
Sbjct: 239 HIGEMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTN 298
Query: 297 VITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 356
V+TDY LK+LGL+VCADTMVGD+M+RGISGGQKKRVTTGEM+VGP+ ALFMDEISTGLDS
Sbjct: 299 VMTDYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDS 358
Query: 357 STTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFF 416
STT+QIVN LR +HI +GTA+ISLLQPAPET++LFDDIIL+++G+I+Y+GPR+ V+EFF
Sbjct: 359 STTYQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFF 418
Query: 417 ASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISD 476
+MGF+CP RKGVADFLQEVTS+KDQ QYWA +++PYRF+ V+EFAEAFQSFHVG++I D
Sbjct: 419 ETMGFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGD 478
Query: 477 ELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVV 536
EL PFDK+KSH AALTT+ YGVG +EL+K + SRE LLMKRNSFVY FK Q+ +A +
Sbjct: 479 ELALPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFL 538
Query: 537 YMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFP 596
MTLF RT+M K T DG ++ GA FF + M+ FNG SE+SMTIAKLPVFYKQRD F+P
Sbjct: 539 TMTLFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYP 598
Query: 597 PWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRF 656
W Y++P W+LKIP+SF+E A+ F++YYV+G+D N GR FKQY LL+ +NQMASALF+
Sbjct: 599 AWVYSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKM 658
Query: 657 IAVTGRNMVVANTXXXXXXXXXXXXXXXXXXREDIKKWWKWAYWCSPLTYAQNAIVANEF 716
+A GRNM+VANT R+DIKKWW W YW SP+ Y QNAI+ANEF
Sbjct: 659 VAALGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEF 718
Query: 717 LGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWXXXXXXXXXXXXXXXAYTLALTFLDP 776
GHSW + ++SSETLGV LKSRGF H YWYW +TLALTFL+
Sbjct: 719 FGHSWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNS 778
Query: 777 FEKPRAVITEEIESNEQD 794
KP+AVI EE S+E +
Sbjct: 779 LGKPQAVIAEEPASDETE 796
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2182 (773.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 404/783 (51%), Positives = 546/783 (69%)
Query: 42 LKWAALEKLPTYNRLRKGIL--TTSRG--EANEVDVYNLGLQERQRLIDKLVKVTDVDNE 97
L+WAA+E+LPT++RLRKG+L T++ G E ++D+ L ++++ L++ ++ + DNE
Sbjct: 61 LRWAAIERLPTFDRLRKGMLPQTSANGKIELEDIDLTRLEPKDKKHLMEMILSFVEEDNE 120
Query: 98 RFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157
+FL L+ R DRVGI++PK+EVRYE+++VE + AS ALP+ N E IL + +
Sbjct: 121 KFLRDLRERTDRVGIEVPKIEVRYENISVEGDVRSASRALPTLFNVTLNTLESILGFFHL 180
Query: 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVSGTVTYNGH 217
+PSK++ + ILKD+SG++KP R+TLLLGPP D TL++SG +TY GH
Sbjct: 181 LPSKRKKIQILKDISGIVKPSRMTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGH 240
Query: 218 DMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+ EFVPQ+T AYISQHD H GEMTVRE L FS RC GVG+RY++++EL+RREK GIKP
Sbjct: 241 EFREFVPQKTCAYISQHDLHFGEMTVREILDFSGRCLGVGSRYQLMSELSRREKEEGIKP 300
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
DP ID +MK+IA GQE +++TDY LK+LGLD+CAD + GD M RGISGGQKKR+TTGEM
Sbjct: 301 DPKIDAFMKSIAISGQETSLVTDYVLKILGLDICADILAGDVMRRGISGGQKKRLTTGEM 360
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397
+VGPA ALFMDEISTGLDSSTTFQI +RQ +HI+ T +ISLLQPAPET++LFDDIIL
Sbjct: 361 LVGPARALFMDEISTGLDSSTTFQICKFMRQLVHISDVTMIISLLQPAPETFELFDDIIL 420
Query: 398 LSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVT 457
LS+GQIVYQGPR+ VLEFF GF+CP+RKGVADFLQEVTS+KDQ QYW +E+PY +V+
Sbjct: 421 LSEGQIVYQGPRDNVLEFFEYFGFQCPERKGVADFLQEVTSKKDQEQYWNKREQPYNYVS 480
Query: 458 VQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMK 517
V +F+ F +FH GQK++ E R P+DK+K+H AAL T+ YG+ EL KA RE LLMK
Sbjct: 481 VSDFSSGFSTFHTGQKLTSEFRVPYDKAKTHSAALVTQKYGISNWELFKACFDREWLLMK 540
Query: 518 RNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEIS 577
RNSFVY+FK +QI ++++ MT++LRT+MH TV DG F GA FF++ V FNG +E++
Sbjct: 541 RNSFVYVFKTVQITIMSLITMTVYLRTEMHVGTVRDGQKFYGAMFFSLINVMFNGLAELA 600
Query: 578 MTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFF 637
T+ +LPVFYKQRDF F+PPWA+A+P+W+LKIP+S +E +W+ L+YY +G+ +A RFF
Sbjct: 601 FTVMRLPVFYKQRDFLFYPPWAFALPAWLLKIPLSLIESGIWIGLTYYTIGFAPSAARFF 660
Query: 638 KQYALLLGVNQMASALFRFIAVTGRNMVVANTXXXXXXXXXXXXXXXXXXREDIKKWWKW 697
+Q VNQMA +LFRF+ GR V++N+ ++DI+ W W
Sbjct: 661 RQLLAYFCVNQMALSLFRFLGAIGRTEVISNSIGTFTLLIVFTLGGFIIAKDDIRPWMTW 720
Query: 698 AYWCSPLTYAQNAIVANEFLGHSWKKFTQDS---SETLGVQVLKSRGFFAHEYWYWXXXX 754
AY+ SP+ Y Q AIV NEFL W D+ ++T+G +LKSRGFF YW+W
Sbjct: 721 AYYMSPMMYGQTAIVMNEFLDERWSSPNYDTRINAKTVGEVLLKSRGFFTEPYWFWICIV 780
Query: 755 XXXXXXXXXXXAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNT 814
Y LAL +L+P +A + EE + ++ + G + L SSN
Sbjct: 781 ALLGFSLLFNLFYILALMYLNPLGNSKATVVEEGKDKQKGENRGTEGSVVELNSSSNKGP 840
Query: 815 RSG 817
+ G
Sbjct: 841 KRG 843
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2182 (773.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 410/784 (52%), Positives = 545/784 (69%)
Query: 42 LKWAALEKLPTYNRLRKGIL--TTSRGEAN--EVDVYNLGLQERQRLIDKLVKVTDVDNE 97
L+WAALE+LPTY+RLRKG+L T G+ +VDV NL +E++ L++ ++K + DNE
Sbjct: 59 LRWAALERLPTYDRLRKGMLPQTMVNGKIGLEDVDVTNLAPKEKKHLMEMILKFVEEDNE 118
Query: 98 RFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157
+FL +L+ R DRVGI++PK+EVRYE+L+VE + AS ALP+ N E IL +
Sbjct: 119 KFLRRLRERTDRVGIEVPKIEVRYENLSVEGDVRSASRALPTLFNVTLNTIESILGLFHL 178
Query: 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVSGTVTYNGH 217
+PSKKR + ILKD+SG+IKP R+TLLLGPP D TL++SG +TY GH
Sbjct: 179 LPSKKRKIEILKDISGIIKPSRMTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGH 238
Query: 218 DMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+ EFVPQ+T AYISQHD H GEMTVRE+L FS RC GVGTRY++LTEL+RRE+ AGIKP
Sbjct: 239 EFREFVPQKTCAYISQHDLHFGEMTVRESLDFSGRCLGVGTRYQLLTELSRREREAGIKP 298
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
DP+ID +MK+IA GQE +++TDY LK+LGLD+CADT+VGD M RGISGGQ+KR+TTGEM
Sbjct: 299 DPEIDAFMKSIAISGQETSLVTDYVLKLLGLDICADTLVGDVMRRGISGGQRKRLTTGEM 358
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397
+VGPA ALFMDEISTGLDSSTTFQI +RQ +HI T VISLLQPAPET++LFDDIIL
Sbjct: 359 LVGPATALFMDEISTGLDSSTTFQICKFMRQLVHIADVTMVISLLQPAPETFELFDDIIL 418
Query: 398 LSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVT 457
LS+GQIVYQG R+ VLEFF MGF+CP+RKG+ADFLQEVTS+KDQ QYW +E PY +V+
Sbjct: 419 LSEGQIVYQGSRDNVLEFFEYMGFKCPERKGIADFLQEVTSKKDQEQYWNRREHPYSYVS 478
Query: 458 VQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMK 517
V +F+ F SFH GQ+++ E R P+DK+K+H AAL T+ YG+ ++L KA RE LLMK
Sbjct: 479 VHDFSSGFNSFHAGQQLASEFRVPYDKAKTHPAALVTQKYGISNKDLFKACFDREWLLMK 538
Query: 518 RNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEIS 577
RNSFVY+FK +QI ++++ MT++ RT+MH TV DG F GA FF++ + FNG +E++
Sbjct: 539 RNSFVYVFKTVQITIMSLIAMTVYFRTEMHVGTVQDGQKFYGALFFSLINLMFNGMAELA 598
Query: 578 MTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFF 637
T+ +LPVF+KQRDF F+PPWA+A+P ++LKIP+S +E +W+ L+YY +G+ +A RFF
Sbjct: 599 FTVMRLPVFFKQRDFLFYPPWAFALPGFLLKIPLSLIESVIWIALTYYTIGFAPSAARFF 658
Query: 638 KQYALLLGVNQMASALFRFIAVTGRNMVVANTXXXXXXXXXXXXXXXXXXREDIKKWWKW 697
+Q VNQMA +LFRF+ GR V+AN+ ++DI W W
Sbjct: 659 RQLLAYFCVNQMALSLFRFLGALGRTEVIANSGGTLALLVVFVLGGFIISKDDIPSWLTW 718
Query: 698 AYWCSPLTYAQNAIVANEFLGHSWKKFTQDS---SETLGVQVLKSRGFFAHEYWYWXXXX 754
Y+ SP+ Y Q A+V NEFL W D+ ++T+G +LKSRGFF YW+W
Sbjct: 719 CYYTSPMMYGQTALVINEFLDERWGSPNNDTRINAKTVGEVLLKSRGFFTEPYWFWICIG 778
Query: 755 XXXXXXXXXXXAYTLALTFLDPFEKPRAV-ITEEIESNEQDDRIGGNVQLSTLGGSSNHN 813
Y +AL +L+P +A + EE + + G + L +S+H
Sbjct: 779 ALLGFTVLFNFCYIIALMYLNPLGNSKATTVVEEGKDKHKGSHSGTGGSVVELTSTSSHG 838
Query: 814 TRSG 817
+ G
Sbjct: 839 PKKG 842
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2141 (758.7 bits), Expect = 0., Sum P(2) = 0.
Identities = 413/770 (53%), Positives = 531/770 (68%)
Query: 41 ALKWAALEKLPTYNRLRKGILTTSRGE----ANE-----VDVYNLGLQERQRLIDKLVKV 91
ALKWA++EKLPTYNRLR ++ GE N+ VDV L +ERQ+ ID + KV
Sbjct: 50 ALKWASIEKLPTYNRLRTSLMP-ELGEDDVYGNQILNKAVDVTKLDGEERQKFIDMVFKV 108
Query: 92 TDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDI 151
+ DNER L KL+NRIDRVGI LP VEVRY+HL V+A+ + +LPS + N+ E
Sbjct: 109 AEQDNERILTKLRNRIDRVGIQLPTVEVRYDHLTVKADCYTGDRSLPSLLNAVRNMGEAA 168
Query: 152 LNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVSGT 211
L + I +KK LTILKDVSG++KP R+TLLLGPP D +L VSG
Sbjct: 169 LGMIGIRLAKKAQLTILKDVSGIVKPSRMTLLLGPPSSGKTTLLLALAGKLDKSLDVSGE 228
Query: 212 VTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREK 271
VTYNG+ ++EFVP +T+AYISQ+D H+G MTV+ETL FSARCQGVGTRY++L ELARREK
Sbjct: 229 VTYNGYRLNEFVPIKTSAYISQNDLHVGIMTVKETLDFSARCQGVGTRYDLLNELARREK 288
Query: 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKR 331
AGI P+ D+D++MKA A +G ++++ITDY LK+LGLD+C DT+VGD+M+RGISGGQKKR
Sbjct: 289 DAGIFPEADVDLFMKASAAQGVKSSLITDYTLKILGLDICKDTIVGDDMMRGISGGQKKR 348
Query: 332 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391
VTTGEM+VGP LFMDEISTGLDSSTTFQIV CL+Q +H+ T +ISLLQPAPET+DL
Sbjct: 349 VTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLTEATVLISLLQPAPETFDL 408
Query: 392 FDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEK 451
FDDIILLS+GQIVYQGPR+ +LEFF S GF+CP+RKG ADFLQEVTS+KDQ QYW +
Sbjct: 409 FDDIILLSEGQIVYQGPRDHILEFFESFGFKCPERKGTADFLQEVTSKKDQEQYWVDPNR 468
Query: 452 PYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISR 511
PYR++ V EFA +F+ FHVG K+S+EL P+DKSKSH+AAL + Y + K ELLK+ +
Sbjct: 469 PYRYIPVSEFASSFKKFHVGSKLSNELSVPYDKSKSHKAALMFDKYSIKKTELLKSCWDK 528
Query: 512 ELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFN 571
E +LMKRNSF Y+FK +QI +A + TL+LRT+MH D I+ G+ FA+ + FN
Sbjct: 529 EWMLMKRNSFFYVFKTVQIIIIAAITSTLYLRTEMHTRNEIDANIYVGSLLFAMIVNMFN 588
Query: 572 GFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDS 631
G +E++MTI +LPVFYKQRD F PPW Y +P+++L IP+S E W+ ++YY +GY
Sbjct: 589 GLAEMAMTIQRLPVFYKQRDLLFHPPWTYTLPTFLLGIPISIFESTAWMVVTYYSIGYAP 648
Query: 632 NAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTXXXXXXXXXXXXXXXXXXREDI 691
+A RFFKQ+ ++ + QMA+ +FRFIA T R M +ANT R +I
Sbjct: 649 DAERFFKQFLIIFLIQQMAAGIFRFIASTCRTMTIANTGGVLVLLVVFLTGGFLLPRSEI 708
Query: 692 KKWWKWAYWCSPLTYAQNAIVANEFLGHSW-KKFTQDSSETLGVQVLKSRGFFAHEYWYW 750
WW+WAYW SPL+YA NAI NE W K + +S+ LG VL F + WYW
Sbjct: 709 PVWWRWAYWISPLSYAFNAITVNELFAPRWMNKMSGNSTTRLGTSVLNIWDVFDDKNWYW 768
Query: 751 XXXXXXXXXXXXXXXAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGN 800
+TLALT+LDP K +A++ +E E E + G N
Sbjct: 769 IGVGGLLGFTVIFNGFFTLALTYLDPLGKAQAILPKE-EDEEAKGKAGSN 817
|
|
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2057 (729.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 379/777 (48%), Positives = 525/777 (67%)
Query: 21 WNT--NSIGAFXXXXXXXXXXXALKWAALEKLPTYNRLRKGILTTSRGEANEVDVYNLGL 78
WN+ N+ L+WAAL++LPTY+R+R+GI GE E+ + NL
Sbjct: 2 WNSAENAFSRSTSFKDEIEDEEELRWAALQRLPTYSRIRRGIFRDMVGEPKEIQIGNLEA 61
Query: 79 QERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALP 138
E++ L+D+LV + D E+F +++ R D V + PK+EVR+++L VE+ + S ALP
Sbjct: 62 SEQRLLLDRLVNSVENDPEQFFARVRKRFDAVDLKFPKIEVRFQNLMVESFVHVGSRALP 121
Query: 139 SFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXX 198
+ F N+ E +L + +I K+ LTIL +SGVI+P RLTLLLGPP
Sbjct: 122 TIPNFIINMAEGLLRNIHVIGGKRNKLTILDGISGVIRPSRLTLLLGPPSSGKTTLLLAL 181
Query: 199 XXXXDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 258
L+ SG +TYNG+D+ E + RT+AY+SQ D H+ EMTVR+TL F+ RCQGVG
Sbjct: 182 AGRLGTNLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRCQGVGF 241
Query: 259 RYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318
+Y+ML ELARREK AGI PD D+D++MK++A G E +++ +Y +K+LGLD CADT+VGD
Sbjct: 242 KYDMLLELARREKLAGIVPDEDLDIFMKSLALGGMETSLVVEYVMKILGLDTCADTLVGD 301
Query: 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV 378
EMI+GISGGQKKR+TTGE++VGPA LFMDEIS GLDSSTT QI+ +R + H GT V
Sbjct: 302 EMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHALEGTTV 361
Query: 379 ISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTS 438
ISLLQP+PETY+LFDD+IL+S+GQI+YQGPR+ VL+FF+S+GF CP RK VADFLQEVTS
Sbjct: 362 ISLLQPSPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPDRKNVADFLQEVTS 421
Query: 439 RKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYG 498
+KDQ+QYW+ +PYR+V +FAEAF+S+ G+K++ +L PFDK +H AAL+T YG
Sbjct: 422 KKDQQQYWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALSTSQYG 481
Query: 499 VGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFA 558
V K ELLK N + + LMK+N+F+Y+FK +Q+ VA++ MT+F RT MH +T+ DG I+
Sbjct: 482 VKKSELLKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDDGNIYL 541
Query: 559 GATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAV 618
G+ +F++ ++ FNGF+E+ M +AKLPV YK RD F+P WAY +PSW+L IP S +E A
Sbjct: 542 GSLYFSMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSIIESAT 601
Query: 619 WVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTXXXXXXXXX 678
WV ++YY +GYD RF +Q+ L ++QM+ LFR + GR+M+VANT
Sbjct: 602 WVAVTYYTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGSFAMLVV 661
Query: 679 XXXXXXXXXREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQD-SSETLGVQVL 737
R+ I WW W YW SPL YAQNA NEFLGH+W+K + +S++LG+ +L
Sbjct: 662 MTLGGFIISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNWQKTAGNHTSDSLGLALL 721
Query: 738 KSRGFFAHEYWYWXXXXXXXXXXXXXXXAYTLALTFLDPFEKPRAVIT-EEIESNEQ 793
K R F+ YWYW +TL L L+P+ K +AV++ EE++ E+
Sbjct: 722 KERSLFSGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPWGKFQAVVSREELDEREK 778
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2032 (720.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 390/757 (51%), Positives = 519/757 (68%)
Query: 41 ALKWAALEKLPTYNRLRKGILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFL 100
ALKWAALEKLPT+ RLR I+ + VDV LG+ +RQ+ ID + KVT+ DNE+FL
Sbjct: 39 ALKWAALEKLPTFARLRTTII---HPHEDLVDVTKLGVDDRQKFIDSIFKVTEEDNEKFL 95
Query: 101 LKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPS 160
K +NRIDRV I LP VEVR+E + +EA + ALP+ NI E L L +
Sbjct: 96 KKFRNRIDRVRIKLPTVEVRFEKVTIEANCHIGKRALPTLPNAALNIAERGLRLLGFNFT 155
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVSGTVTYNGHDMD 220
K +TIL+DVSG+IKP R+TLLLGPP D +LKV+G VTYNGH ++
Sbjct: 156 KTTKVTILRDVSGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDQSLKVTGRVTYNGHGLE 215
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
EFVPQ+T+AYISQ+D H+G MTV+ETL FSARCQGVGTRY++L+EL RREK AGI P+P+
Sbjct: 216 EFVPQKTSAYISQNDVHVGVMTVQETLDFSARCQGVGTRYDLLSELVRREKDAGILPEPE 275
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
+D++MK+IA ++++ITDY L++LGLD+C DT+VGDEMIRGISGGQKKRVTTGEM+VG
Sbjct: 276 VDLFMKSIAAGNVKSSLITDYTLRILGLDICKDTVVGDEMIRGISGGQKKRVTTGEMIVG 335
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
P LFMDEISTGLDSSTT+QIV CL++ + T ++SLLQPAPET++LFDDIILLS+
Sbjct: 336 PTKTLFMDEISTGLDSSTTYQIVKCLQEIVRFTDATVLMSLLQPAPETFELFDDIILLSE 395
Query: 401 GQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQE 460
GQIVYQGPR+ VL FF + GF+CP RKG ADFLQEVTSRKDQ QYWA +KPY +++V E
Sbjct: 396 GQIVYQGPRDHVLTFFETCGFKCPDRKGTADFLQEVTSRKDQEQYWADSKKPYSYISVSE 455
Query: 461 FAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNS 520
F++ F++FHVG + +L P+D+ KSH A+L + + V K +L K RELLLMKRN+
Sbjct: 456 FSKRFRTFHVGANLEKDLSVPYDRFKSHPASLVFKKHSVPKSQLFKVCWDRELLLMKRNA 515
Query: 521 FVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTI 580
F YI K +QI +A++ T++LRT+M +DG ++ GA F++ + FNGF+E+++ I
Sbjct: 516 FFYITKTVQIIIMALIASTVYLRTEMGTKNESDGAVYIGALMFSMIVNMFNGFAELALMI 575
Query: 581 AKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQY 640
+LPVFYKQRD F PPW +++P+++L IP+S E VWV ++YY++G+ RF K
Sbjct: 576 QRLPVFYKQRDLLFHPPWTFSLPTFLLGIPISIFESVVWVTITYYMIGFAPELSRFLKHL 635
Query: 641 ALLLGVNQMASALFRFIAVTGRNMVVANTXXXXXXXXXXXXXXXXXXREDIKKWWKWAYW 700
++ QMA +FRFIA T R+M++ANT R +I KWWKWAYW
Sbjct: 636 LVIFLTQQMAGGIFRFIAATCRSMILANTGGALVILLLFLLGGFIVPRGEIPKWWKWAYW 695
Query: 701 CSPLTYAQNAIVANEFLGHSW-KKFTQDSSETLGVQVLKSRGFFAHEYWYWXXXXXXXXX 759
SP+ Y +A+ NE L W + + D+S +LG+ VL+ F WYW
Sbjct: 696 VSPMAYTYDALTVNEMLAPRWINQPSSDNSTSLGLAVLEIFDIFTDPNWYWIGVGGILGF 755
Query: 760 XXXXXXAYTLALTFLDPFEKPRAVITEE-IESNEQDD 795
TLALTFL+P EK +AV+++E E N ++
Sbjct: 756 TVLFNILVTLALTFLNPLEKQQAVVSKENTEENRAEN 792
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1838 (652.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 360/765 (47%), Positives = 492/765 (64%)
Query: 42 LKWAALEKLP-----TYNRL--RKGILTTSRGEAN-----EVDVYNLGLQERQRLIDKLV 89
L+WAA+ +LP T+N + R T + G A+ +DV L +R+ L+ + +
Sbjct: 38 LRWAAIGRLPSQRQGTHNAILRRSQTQTQTSGYADGNVVQTIDVKKLDRADREMLVRQAL 97
Query: 90 KVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFE 149
+D DN + L +K R+DRVG+++PK+EVR+E+LN+EA+ + ALP+ + + FE
Sbjct: 98 ATSDQDNFKLLSAIKERLDRVGMEVPKIEVRFENLNIEADVQAGTRALPTLVNVSRDFFE 157
Query: 150 DILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVS 209
L+ LRII +K L ILKD+SG+IKPGR+TLLLGPP D +LK +
Sbjct: 158 RCLSSLRIIKPRKHKLNILKDISGIIKPGRMTLLLGPPGSGKSTLLLALAGKLDKSLKKT 217
Query: 210 GTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYE-MLTELAR 268
G +TYNG ++++F +RT+AYISQ DNHI E+TVRETL F+ARCQG + + +L R
Sbjct: 218 GNITYNGENLNKFHVKRTSAYISQTDNHIAELTVRETLDFAARCQGASEGFAGYMKDLTR 277
Query: 269 REKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328
EK GI+P +ID +MKA + +G++ +V TDY LKVLGLDVC+DTMVG++M+RG+SGGQ
Sbjct: 278 LEKERGIRPSSEIDAFMKAASVKGEKHSVSTDYVLKVLGLDVCSDTMVGNDMMRGVSGGQ 337
Query: 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388
+KRVTTGEM VGP LFMDEISTGLDSSTTFQIV C+R +H+ T +++LLQPAPET
Sbjct: 338 RKRVTTGEMTVGPRKTLFMDEISTGLDSSTTFQIVKCIRNFVHLMDATVLMALLQPAPET 397
Query: 389 YDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAH 448
+DLFDD+ILLS+G +VYQGPRE V+ FF S+GFR P RKGVADFLQEVTS+KDQ QYWA
Sbjct: 398 FDLFDDLILLSEGYMVYQGPREDVIAFFESLGFRLPPRKGVADFLQEVTSKKDQAQYWAD 457
Query: 449 KEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKAN 508
KPY+F+ V + A AF++ G +L PFDK + +AL + + E LK
Sbjct: 458 PSKPYQFIPVSDIAAAFRNSKYGHAADSKLAAPFDKKSADPSALCRTKFAISGWENLKVC 517
Query: 509 ISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMV 568
RELLL+KR+ F+Y F+ Q+ FV +V T+FL+T++H + G + FF + +
Sbjct: 518 FVRELLLIKRHKFLYTFRTCQVGFVGLVTATVFLKTRLHPTSEQFGNEYLSCLFFGLVHM 577
Query: 569 NFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVG 628
FNGFSE+ + I++LPVFYKQRD F P W+++I SW+L++P S LE VW + Y+ VG
Sbjct: 578 MFNGFSELPLMISRLPVFYKQRDNSFHPAWSWSIASWLLRVPYSVLEAVVWSGVVYFTVG 637
Query: 629 YDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTXXXXXXXXXXXXXXXXXXR 688
+AGRFF+ LL V+QMA LFR +A R+MV+ANT +
Sbjct: 638 LAPSAGRFFRYMLLLFSVHQMALGLFRMMASLARDMVIANTFGSAAILIVFLLGGFVIPK 697
Query: 689 EDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYW 748
DIK WW W +W SPL+Y Q AI NEF W + S T+G+ +LK R F ++YW
Sbjct: 698 ADIKPWWVWGFWVSPLSYGQRAIAVNEFTATRWMTPSAISDTTIGLNLLKLRSFPTNDYW 757
Query: 749 YWXXXXXXXXXXXXXXXAYTLALTFLDPFEKPRAVITEEIESNEQ 793
YW TLAL +L+P K RAV+ ++ NE+
Sbjct: 758 YWIGIAVLIGYAILFNNVVTLALAYLNPLRKARAVVLDD--PNEE 800
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1817 (644.7 bits), Expect = 0., Sum P(2) = 0.
Identities = 355/753 (47%), Positives = 491/753 (65%)
Query: 41 ALKWAALEKLPTYNRLRKGILTTSRGEANE-----VDVYNLGLQERQRLIDKLVKVTDVD 95
AL+WA +++LPT+ RLR L GE E VDV LG ER +I+KL+K + D
Sbjct: 24 ALQWAEIQRLPTFKRLRSS-LVDKYGEGTEKGKKVVDVTKLGAMERHLMIEKLIKHIEND 82
Query: 96 NERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEA-FLASNALPSFIKFYTNIFEDILNY 154
N + L K++ R++RVG++ P +EVRYEHL VEA + ALP+ ++F D+L
Sbjct: 83 NLKLLKKIRRRMERVGVEFPSIEVRYEHLGVEAACEVVEGKALPTLWNSLKHVFLDLLK- 141
Query: 155 LRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVSGTVTY 214
L + + + ++ IL DVSG+I PGRLTLLLGPP + LK G ++Y
Sbjct: 142 LSGVRTNEANIKILTDVSGIISPGRLTLLLGPPGCGKTTLLKALSGNLENNLKCYGEISY 201
Query: 215 NGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
NGH ++E VPQ+T+AYISQHD HI EMT RET+ FSARCQGVG+R +++ E+++REK G
Sbjct: 202 NGHGLNEVVPQKTSAYISQHDLHIAEMTTRETIDFSARCQGVGSRTDIMMEVSKREKDGG 261
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334
I PDP+ID YMKAI+ +G + ++ TDY LK+LGLD+CA+T+VG+ M RGISGGQKKR+TT
Sbjct: 262 IIPDPEIDAYMKAISVKGLKRSLQTDYILKILGLDICAETLVGNAMKRGISGGQKKRLTT 321
Query: 335 GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394
EM+VGP ALFMDEI+ GLDSST FQI+ L+Q HI + T +SLLQPAPE+YDLFDD
Sbjct: 322 AEMIVGPTKALFMDEITNGLDSSTAFQIIKSLQQVAHITNATVFVSLLQPAPESYDLFDD 381
Query: 395 IILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYR 454
I+L+++G+IVY GPR+ VL+FF GF+CP+RKGVADFLQEV S+KDQ QYW H+ P+
Sbjct: 382 IVLMAEGKIVYHGPRDDVLKFFEECGFQCPERKGVADFLQEVISKKDQGQYWLHQNLPHS 441
Query: 455 FVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELL 514
FV+V ++ F+ +G+KI + L P+D SK+H+ AL+ Y + K EL +A ISRE L
Sbjct: 442 FVSVDTLSKRFKDLEIGRKIEEALSKPYDISKTHKDALSFNVYSLPKWELFRACISREFL 501
Query: 515 LMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFS 574
LMKRN FVY+FK Q+ A++ MT+F+RT+M D + G + FFA ++ +G
Sbjct: 502 LMKRNYFVYLFKTFQLVLAAIITMTVFIRTRMDIDII-HGNSYMSCLFFATVVLLVDGIP 560
Query: 575 EISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAG 634
E+SMT+ +L VFYKQ+ F+P WAYAIP+ +LKIP+SF E VW L+YYV+GY
Sbjct: 561 ELSMTVQRLSVFYKQKQLCFYPAWAYAIPATVLKIPLSFFESLVWTCLTYYVIGYTPEPY 620
Query: 635 RFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTXXXXXXXXXXXXXXXXXXREDIKKW 694
RFF+Q+ +L V+ + ++FR IA + V A T D+ W
Sbjct: 621 RFFRQFMILFAVHFTSISMFRCIAAIFQTGVAAMTAGSFVMLITFVFAGFAIPYTDMPGW 680
Query: 695 WKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWXXXX 754
KW +W +P++YA+ + NEFL W+K Q ++ TLG +L+SRG +Y YW
Sbjct: 681 LKWGFWVNPISYAEIGLSVNEFLAPRWQKM-QPTNVTLGRTILESRGLNYDDYMYWVSLS 739
Query: 755 XXXXXXXXXXXAYTLALTFLDPFEKPRAVITEE 787
+TLAL+FL R +I+++
Sbjct: 740 ALLGLTIIFNTIFTLALSFLKSPTSSRPMISQD 772
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1812 (642.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 365/757 (48%), Positives = 492/757 (64%)
Query: 41 ALKWAALEKLPTYNRLRKGILT------TSRGEANEVDVYNLGLQERQRLIDKLVKVTDV 94
AL+WA +E+LPT R+R +L T +G VDV LG ER +I+KL+K +
Sbjct: 58 ALQWAEIERLPTVKRMRSTLLDDGDESMTEKGR-RVVDVTKLGAVERHLMIEKLIKHIEN 116
Query: 95 DNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEA-FLASNALPSFIKFYTNIFEDILN 153
DN + L K++ RIDRVG++LP +EVRYE L V AE + ALP+ N + +L+
Sbjct: 117 DNLKLLKKIRRRIDRVGMELPTIEVRYESLKVVAECEVVEGKALPTL----WNTAKRVLS 172
Query: 154 YLRIIPSKKRH---LTILKDVSGVIKPGRLTLLLGPPXXXXXXXXXXXXXXXDPTLKVSG 210
L + K H + I+ DV+G+IKPGRLTLLLGPP + LK SG
Sbjct: 173 ELVKLTGAKTHEAKINIINDVNGIIKPGRLTLLLGPPSCGKTTLLKALSGNLENNLKCSG 232
Query: 211 TVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARRE 270
++YNGH +DEFVPQ+T+AYISQ+D HI EMTVRET+ FSARCQGVG+R +++ E+++RE
Sbjct: 233 EISYNGHRLDEFVPQKTSAYISQYDLHIAEMTVRETVDFSARCQGVGSRTDIMMEVSKRE 292
Query: 271 KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKK 330
K GI PD ++D YMKAI+ EG + ++ TDY LK+LGLD+CA+ ++GD M RGISGGQKK
Sbjct: 293 KEKGIIPDTEVDAYMKAISVEGLQRSLQTDYILKILGLDICAEILIGDVMRRGISGGQKK 352
Query: 331 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390
R+TT EM+VGP ALFMDEI+ GLDSST FQIV L+Q HI+S T ++SLLQPAPE+YD
Sbjct: 353 RLTTAEMIVGPTKALFMDEITNGLDSSTAFQIVKSLQQFAHISSATVLVSLLQPAPESYD 412
Query: 391 LFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKE 450
LFDDI+L++ G+IVY GPR VL FF GFRCP+RKGVADFLQEV S+KDQ QYW H++
Sbjct: 413 LFDDIMLMAKGRIVYHGPRGEVLNFFEDCGFRCPERKGVADFLQEVISKKDQAQYWWHED 472
Query: 451 KPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANIS 510
PY FV+V+ ++ F+ +G+KI D L P+D+SKSH+ AL+ Y + EL A IS
Sbjct: 473 LPYSFVSVEMLSKKFKDLSIGKKIEDTLSKPYDRSKSHKDALSFSVYSLPNWELFIACIS 532
Query: 511 RELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNF 570
RE LLMKRN FVYIFK Q+ A + MT+F+RT+M D + G + A FFA+ ++
Sbjct: 533 REYLLMKRNYFVYIFKTAQLVMAAFITMTVFIRTRMGIDII-HGNSYMSALFFALIILLV 591
Query: 571 NGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYD 630
+GF E+SMT +L VFYKQ+ F+P WAYAIP+ +LK+P+SF E VW LSYYV+GY
Sbjct: 592 DGFPELSMTAQRLAVFYKQKQLCFYPAWAYAIPATVLKVPLSFFESLVWTCLSYYVIGYT 651
Query: 631 SNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTXXXXXXXXXXXXXXXXXXRED 690
A RFFKQ+ LL V+ + ++FR +A + +V + T
Sbjct: 652 PEASRFFKQFILLFAVHFTSISMFRCLAAIFQTVVASITAGSFGILFTFVFAGFVIPPPS 711
Query: 691 IKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYW 750
+ W KW +W +PL+Y + + NEFL W + Q ++ TLG +L++RG + Y YW
Sbjct: 712 MPAWLKWGFWANPLSYGEIGLSVNEFLAPRWNQM-QPNNFTLGRTILQTRGMDYNGYMYW 770
Query: 751 XXXXXXXXXXXXXXXAYTLALTFLDPFEKPRAVITEE 787
+TLALTFL RA+I+++
Sbjct: 771 VSLCALLGFTVLFNIIFTLALTFLKSPTSSRAMISQD 807
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q2PCF1 | PDR2_NICPL | No assigned EC number | 0.5934 | 0.9690 | 0.8131 | N/A | no |
| Q9M9E1 | AB40G_ARATH | No assigned EC number | 0.6883 | 0.9722 | 0.8376 | yes | no |
| O24367 | TUR2_SPIPO | No assigned EC number | 0.6952 | 0.9738 | 0.8285 | N/A | no |
| Q76CU2 | PDR1_TOBAC | No assigned EC number | 0.7232 | 0.9665 | 0.8263 | N/A | no |
| Q949G3 | PDR1_NICPL | No assigned EC number | 0.7057 | 0.9600 | 0.8196 | N/A | no |
| A2WSH0 | PDR3_ORYSI | No assigned EC number | 0.6923 | 0.9738 | 0.8194 | N/A | no |
| Q8GU88 | PDR7_ORYSJ | No assigned EC number | 0.6894 | 0.9763 | 0.8289 | yes | no |
| Q5W274 | PDR3_TOBAC | No assigned EC number | 0.5347 | 0.9641 | 0.8168 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| ABC | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (1433 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1226 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-100 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 9e-76 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-72 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 8e-71 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-54 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 2e-48 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-43 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-43 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 9e-42 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 3e-39 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 6e-39 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 5e-38 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 5e-37 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-34 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 5e-34 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-33 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-31 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 4e-30 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-29 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-28 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 8e-28 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 3e-24 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-23 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 5e-23 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 4e-22 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-22 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 7e-22 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 8e-22 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-21 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-21 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 3e-21 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 4e-21 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 5e-21 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-20 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-20 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-20 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-20 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-19 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-19 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 4e-19 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 5e-19 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 9e-19 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 3e-18 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 3e-18 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 6e-18 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 7e-18 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 7e-18 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-17 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-17 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-17 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-17 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-17 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-17 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-17 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 5e-17 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 6e-17 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 6e-17 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 8e-17 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 9e-17 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 9e-17 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-16 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-16 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-16 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-16 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-16 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 4e-16 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 5e-16 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 5e-16 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 7e-16 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 8e-16 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 8e-16 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 8e-16 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-15 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-15 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-15 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-15 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 4e-15 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 4e-15 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 4e-15 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 5e-15 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 6e-15 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 6e-15 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 7e-15 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 7e-15 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 7e-15 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-14 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-14 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-14 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-14 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-14 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-14 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-14 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-14 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-14 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-14 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-14 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 7e-14 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 7e-14 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-13 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-13 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-13 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-13 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-13 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-13 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-13 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-13 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-13 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-13 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-13 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-13 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-13 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-13 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-13 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 3e-13 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 3e-13 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-13 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-13 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 4e-13 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-13 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 4e-13 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 4e-13 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 4e-13 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 5e-13 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 8e-13 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 9e-13 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 9e-13 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 9e-13 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-12 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-12 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-12 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-12 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-12 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-12 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-12 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-12 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-12 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-12 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-12 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-12 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-12 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-12 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-12 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 4e-12 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 4e-12 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 5e-12 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 5e-12 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 6e-12 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 7e-12 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 7e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 8e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 9e-12 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 9e-12 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-11 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-11 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-11 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-11 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-11 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-11 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-11 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-11 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-11 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-11 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-11 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-11 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-11 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-11 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-11 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-11 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 3e-11 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-11 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 4e-11 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 4e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-11 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 4e-11 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 4e-11 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 4e-11 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 4e-11 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 5e-11 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 5e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 8e-11 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 8e-11 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-10 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-10 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-10 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-10 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-10 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-10 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-10 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-10 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 1e-10 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-10 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-10 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-10 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-10 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-10 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-10 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-10 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-10 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-10 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-10 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-10 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 3e-10 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 4e-10 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 4e-10 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-10 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-10 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 4e-10 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 4e-10 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 4e-10 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-10 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 5e-10 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 5e-10 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 6e-10 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 6e-10 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 7e-10 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 7e-10 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 7e-10 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 7e-10 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 8e-10 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 8e-10 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 9e-10 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-09 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-09 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-09 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-09 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-09 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-09 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-09 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 1e-09 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-09 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-09 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-09 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-09 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-09 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-09 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-09 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 4e-09 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 5e-09 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 5e-09 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 5e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 6e-09 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 7e-09 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 7e-09 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 7e-09 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 7e-09 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 8e-09 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 9e-09 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-08 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-08 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-08 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 2e-08 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-08 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-08 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-08 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-08 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 3e-08 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-08 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 3e-08 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 4e-08 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 4e-08 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 4e-08 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 5e-08 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 5e-08 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 5e-08 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 6e-08 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 6e-08 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 6e-08 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 7e-08 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 7e-08 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 7e-08 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 8e-08 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 8e-08 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 8e-08 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-07 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-07 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-07 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-07 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-07 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 1e-07 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 1e-07 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 1e-07 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-07 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-07 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-07 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-07 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-07 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-07 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 3e-07 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 3e-07 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 3e-07 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 4e-07 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 4e-07 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 4e-07 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 4e-07 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 4e-07 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 4e-07 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 4e-07 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 4e-07 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 4e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 4e-07 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 5e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 5e-07 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 5e-07 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 6e-07 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 6e-07 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 6e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 6e-07 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 6e-07 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 6e-07 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 7e-07 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 8e-07 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 8e-07 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 9e-07 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 9e-07 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-06 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-06 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-06 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-06 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-06 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-06 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-06 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-06 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 1e-06 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-06 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-06 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-06 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-06 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-06 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-06 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-06 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-06 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-06 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-06 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-06 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-06 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 3e-06 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-06 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 3e-06 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 3e-06 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 3e-06 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 3e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-06 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 3e-06 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 3e-06 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 4e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 4e-06 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 4e-06 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 4e-06 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 5e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 5e-06 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 5e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 5e-06 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 5e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 5e-06 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 5e-06 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 6e-06 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 6e-06 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 6e-06 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 7e-06 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 8e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 8e-06 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 8e-06 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 9e-06 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 9e-06 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 9e-06 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 9e-06 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-05 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-05 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-05 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-05 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 1e-05 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 1e-05 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-05 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 1e-05 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-05 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-05 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-05 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-05 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-05 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-05 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-05 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-05 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-05 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-05 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-05 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 2e-05 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-05 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 3e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-05 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-05 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-05 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 4e-05 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 4e-05 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 4e-05 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 4e-05 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-05 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 5e-05 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-05 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 5e-05 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 5e-05 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 5e-05 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 5e-05 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 5e-05 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 5e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 5e-05 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 6e-05 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 7e-05 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 7e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 8e-05 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 8e-05 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 8e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 8e-05 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 9e-05 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 9e-05 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-04 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-04 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-04 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-04 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 1e-04 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-04 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 1e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 1e-04 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-04 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 1e-04 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-04 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 1e-04 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 1e-04 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-04 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 1e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 2e-04 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-04 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-04 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-04 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-04 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-04 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-04 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-04 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-04 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-04 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 2e-04 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-04 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-04 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-04 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-04 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-04 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-04 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 3e-04 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-04 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 3e-04 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 4e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-04 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-04 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 4e-04 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 4e-04 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 5e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 5e-04 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 5e-04 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 5e-04 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 5e-04 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 6e-04 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 6e-04 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 6e-04 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 7e-04 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 7e-04 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 7e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 7e-04 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 7e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 7e-04 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 8e-04 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 9e-04 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 9e-04 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 0.001 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 0.001 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 0.001 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 0.001 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 0.001 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 0.001 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 0.001 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 0.001 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 0.002 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 0.002 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 0.002 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 0.002 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 0.002 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.002 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 0.002 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 0.002 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 0.002 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.002 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 0.002 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 0.002 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 0.002 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 0.003 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 0.003 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 0.003 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 0.003 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 0.003 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.003 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 0.004 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 0.004 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 0.004 | |
| pfam13481 | 154 | pfam13481, AAA_25, AAA domain | 0.004 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 0.004 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.004 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 1797 bits (4657), Expect = 0.0
Identities = 756/1231 (61%), Positives = 932/1231 (75%), Gaps = 18/1231 (1%)
Query: 11 STSLRRSASRWNTNSIGAFS-------RSSREEDDEEALKWAALEKLPTYNRLRKGILTT 63
S+ RS SR + N FS R+S ++DEEALKWAA+EKLPTY+RLR I+ +
Sbjct: 9 RRSISRSVSRSSRNMEDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKS 68
Query: 64 --------SRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLP 115
++ EVDV L +RQ+ ID + KV + DNE+FL K +NRIDRVGI LP
Sbjct: 69 FVENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLP 128
Query: 116 KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVI 175
VEVR+EHL VEA+ ++ S ALP+ NI E L L I +KK LTILKD SG+I
Sbjct: 129 TVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGII 188
Query: 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD 235
KP R+TLLLGPPSSGKTTLLLALAGKLDP+LKVSG +TYNG+ ++EFVP++T+AYISQ+D
Sbjct: 189 KPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQND 248
Query: 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEA 295
H+G MTV+ETL FSARCQGVGTRY++L+ELARREK AGI P+ ++D++MKA A EG ++
Sbjct: 249 VHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKS 308
Query: 296 NVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLD 355
++ITDY LK+LGLD+C DT+VGDEMIRGISGGQKKRVTTGEM+VGP LFMDEISTGLD
Sbjct: 309 SLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLD 368
Query: 356 SSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEF 415
SSTT+QIV CL+Q +H+ T ++SLLQPAPET+DLFDDIILLS+GQIVYQGPR+ +LEF
Sbjct: 369 SSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEF 428
Query: 416 FASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKIS 475
F S GF+CP+RKG ADFLQEVTS+KDQ QYWA + KPYR+++V EFAE F+SFHVG ++
Sbjct: 429 FESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLE 488
Query: 476 DELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAV 535
+EL PFDKS+SH+AAL Y V K ELLKA +E LLMKRN+FVY+FK +QI VA
Sbjct: 489 NELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAA 548
Query: 536 VYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFF 595
+ T+FLRT+MH DG ++ GA F++ + FNGF+E+++ I +LPVFYKQRD F
Sbjct: 549 IASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFH 608
Query: 596 PPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFR 655
PPW + +P+++L IP+S +E VWV ++YY +G+ A RFFKQ L+ + QMA+ +FR
Sbjct: 609 PPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFR 668
Query: 656 FIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANE 715
IA R M++ANT G+ LL++ LGGFIL + +I WW+WAYW SPL+Y NA+ NE
Sbjct: 669 LIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNE 728
Query: 716 FLGHSW-KKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFL 774
W K D+S LG VL F + WYW+G+GAL GF +L N +TLALT+L
Sbjct: 729 MFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYL 788
Query: 775 DPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSL 834
+P K +A+I+EE + + LS+ G++ + G + S
Sbjct: 789 NPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRD--SS 846
Query: 835 AEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPG 894
EA K+GMVLPF P +++FD+V Y VDMP EMK QGV ED+L LL V+GAFRPG
Sbjct: 847 LEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPG 906
Query: 895 VLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP 954
VLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISG+PKKQETFARISGYCEQNDIHSP
Sbjct: 907 VLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSP 966
Query: 955 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014
VT+ ESL++SA+LRL EV E + MF+DEVMELVEL+ L+ ++VGLPGV+GLSTEQRK
Sbjct: 967 QVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRK 1026
Query: 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 1074
RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA
Sbjct: 1027 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 1086
Query: 1075 FDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELA 1134
FDEL LMKRGGQ IY GPLGR+S +I YFEAIPGV KIK+ YNPATWMLEVS+ + E+
Sbjct: 1087 FDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVK 1146
Query: 1135 LGIDFTEHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSY 1194
LGIDF EHYK S LY+RNKAL+++LS PPPG+ DLYF TQ+SQS+W QF +CLWKQ W+Y
Sbjct: 1147 LGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTY 1206
Query: 1195 WRNPPYTAVRFFFTAFIALLFGSLFWDLGGR 1225
WR+P Y VRFFFT AL+ G++FW +G +
Sbjct: 1207 WRSPDYNLVRFFFTLAAALMVGTIFWKVGTK 1237
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 1018 bits (2635), Expect = 0.0
Identities = 358/1188 (30%), Positives = 550/1188 (46%), Gaps = 130/1188 (10%)
Query: 95 DNERFLLKLKNRIDRVGIDLP--KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDIL 152
+ + ++ + ID I K+ V Y++L+ A S+ P+F I
Sbjct: 4 NAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYGVA-ADSDYQPTFPNALLKILTRGF 62
Query: 153 NYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLK-VSGT 211
L+ + ILK + G+IKPG LT++LG P SG +TLL +A D V G
Sbjct: 63 RKLKK-FRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGV 121
Query: 212 VTYNGHDMDEFVPQRTA--AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARR 269
+TY+G +E Y ++ D H +TV ETL F+ARC+ R + ++
Sbjct: 122 ITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYA 181
Query: 270 EKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQK 329
+ I D Y+ GL +T VG++ +RG+SGG++
Sbjct: 182 KH--------------------------IADVYMATYGLSHTRNTKVGNDFVRGVSGGER 215
Query: 330 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389
KRV+ E +G A D + GLDS+T + + L+ + +I T ++++ Q + + Y
Sbjct: 216 KRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAY 275
Query: 390 DLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHK 449
+LFD +I+L +G +Y GP + ++F MGF+CP R+ ADFL +TS +RQ
Sbjct: 276 ELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPA-ERQIKPGY 334
Query: 450 EKP-YRFVTVQEFAEAFQSFHVGQKISDELRTPFDK---------------SKSHRAALT 493
EK R T QEF +++ ++ E+ D+ +K +
Sbjct: 335 EKKVPR--TPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRP 392
Query: 494 TETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTD 553
+ Y V +K ++R L MK N +F + +A++ ++F +
Sbjct: 393 SSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYS 452
Query: 554 GGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSF 613
G GA FFAI F+ EI+ P+ K R + + P A AI S I +IP
Sbjct: 453 RG---GALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKI 509
Query: 614 LEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSF 673
+E V+ + Y++V + AGRFF +L S LFR I + + A T +
Sbjct: 510 IESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAI 569
Query: 674 ALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQ----DSS 729
LL L GF + R + W KW Y+ +PL YA +++ NEF G ++
Sbjct: 570 LLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGY 629
Query: 730 ETLGVQ---------------VLKS---RGFFAHEY-WYWLGLGALFGFVLLLNFAYTLA 770
+ LGV V + F + W G + GF + F Y L
Sbjct: 630 DNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILL 689
Query: 771 LTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQ 830
F ++ ++ + + + G T + + +DI
Sbjct: 690 TEFNKGAKQKGEILVFR-RGSLKRAKKAG-------------ETSASNKNDI-------- 727
Query: 831 SLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKV-----------QGVLED 879
+ G VL + D+V DM +E + ++
Sbjct: 728 -------------EAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKE 774
Query: 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETF 939
K V+LN V G +PG LTALMG SGAGKTTL++VLA R T G ITG + +F
Sbjct: 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSF 834
Query: 940 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
R GY +Q D+H P T+ ESL FSA+LR V + +++EV++L+E+ ++
Sbjct: 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAV 894
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1058
VG+PG GL+ EQRKRLTI VELVA P ++F+DEPTSGLD++ A + + +R D G+
Sbjct: 895 VGVPG-EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQ 953
Query: 1059 TVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYN 1118
++CTIHQPS +FE FD L L+++GGQ +Y G LG +S +I+YFE G K + N
Sbjct: 954 AILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFE-KHGAPKCPEDAN 1012
Query: 1119 PATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPT---QF 1175
PA WMLEV A+ D+ E ++ S Y+ K ++ L ++D P ++
Sbjct: 1013 PAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKY 1072
Query: 1176 SQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLG 1223
+ S W QF LW+ YWR P Y +FF T F AL G F+ +G
Sbjct: 1073 AASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVG 1120
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 316 bits (811), Expect = e-100
Identities = 112/239 (46%), Positives = 141/239 (58%), Gaps = 47/239 (19%)
Query: 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 912
LT+ + Y+V + K LLN +SG +PG LTALMG SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVKG---------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 913 VLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 972
VLAGRKT G ITG I I+G P + F R +GY EQ D+HSP +T+ E+L FSA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 973 EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1032
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 1033 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091
EPTSGLD++AA ++R ++ D+G+ ++CTIHQPS IFE FD L L+KRGG+ +Y G
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 263 bits (674), Expect = 9e-76
Identities = 161/644 (25%), Positives = 296/644 (45%), Gaps = 74/644 (11%)
Query: 148 FEDILNYLRIIPSKKRH-LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL 206
++ +++ LR ++R +LK+VSGV KPG L ++G +GKTTL+ ALA + +
Sbjct: 20 WKQLVSRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGV 79
Query: 207 KVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTEL 266
K SG+V NG +D + +AY+ Q D I +TVRE L F A M +
Sbjct: 80 KGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQA-------HLRMPRRV 132
Query: 267 ARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE-MIRGIS 325
++EK + V+ LGL CA+T +G ++G+S
Sbjct: 133 TKKEKRERVD-------------------EVLQA-----LGLRKCANTRIGVPGRVKGLS 168
Query: 326 GGQKKRVTTG-EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP 384
GG++KR+ E++ P L LF DE ++GLDS + +V L+ + T + ++ QP
Sbjct: 169 GGERKRLAFASELLTDPPL-LFCDEPTSGLDSFMAYSVVQVLK-GLAQKGKTIICTIHQP 226
Query: 385 APETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQ 444
+ E ++LFD IIL+++G++ Y G + + FF+ +G CP+ ADF +V + +
Sbjct: 227 SSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSE 286
Query: 445 YWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKS------------HRAAL 492
+ +++ ++F +G+ + K+ + A+
Sbjct: 287 -----NESRE--RIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASW 339
Query: 493 TTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVT 552
T+ Y + KR L ++ R+ LL+K +LIQ A++ ++L + + V
Sbjct: 340 WTQFYALLKRSWL--SVLRDPLLLK-------VRLIQTMMTAILIGLIYLGQGLTQKGVQ 390
Query: 553 DGGIFAGATFFAITMVNF-NGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPV 611
+ GA F +T + F N F I++ A+LPVF ++ + AY + I ++P+
Sbjct: 391 NIN---GALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPL 447
Query: 612 SFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFG 671
+ A++ ++Y+++G S A F L+ V +A++ I+ + +A T G
Sbjct: 448 FIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVG 507
Query: 672 SFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSET 731
++ L GGF ++ + I ++KW + S Y ++ N++ + T ++
Sbjct: 508 PPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTG 567
Query: 732 L----GVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLAL 771
G +L++ F + +L L L + AL
Sbjct: 568 PCPSSGEVILETLSFRNAD--LYLDLIGLVILIFFFRLLAYFAL 609
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 238 bits (611), Expect = 2e-72
Identities = 96/237 (40%), Positives = 139/237 (58%), Gaps = 45/237 (18%)
Query: 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 914
+L+F + +V + LL VSG +PG LTA+MG SGAGK+TL++ L
Sbjct: 3 TLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNAL 55
Query: 915 AGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEV 974
AGR+TG ++G + I+G P + +F +I GY Q+DI P +T+ E+L+F+A LR
Sbjct: 56 AGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR----- 110
Query: 975 DSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1034
GLS +RKR++IA+ELV+NPS++F+DEP
Sbjct: 111 --------------------------------GLSGGERKRVSIALELVSNPSLLFLDEP 138
Query: 1035 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091
TSGLD+ +A VM +R DTGRT++C+IHQPS +IFE FD+L L+ + G+ IY G
Sbjct: 139 TSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 249 bits (637), Expect = 8e-71
Identities = 120/356 (33%), Positives = 185/356 (51%), Gaps = 27/356 (7%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNITISGYPKKQETFAR 941
LL VSG +PG L A+MG SGAGKTTLM+ LA R G +G++ ++G P +
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRA 99
Query: 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 1001
IS Y +Q+D+ P +T+ E L+F A LR+ V + ++ +DEV++ + L + +G
Sbjct: 100 ISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIG 159
Query: 1002 LPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1060
+PG V GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ ++ G+T+
Sbjct: 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTI 219
Query: 1061 VCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPA 1120
+CTIHQPS ++FE FD++ LM G+ Y+G + +F + G + YNPA
Sbjct: 220 ICTIHQPSSELFELFDKIILMA-EGRVAYLGSPD----QAVPFFSDL-GHP-CPENYNPA 272
Query: 1121 TWMLEVSA-------ASQELALGIDFTEHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPT 1173
+ ++V A S+E I + + SD+ R S + L +
Sbjct: 273 DFYVQVLAVIPGSENESRERIEKI--CDSFAVSDIGRDMLVNTNLWSGK---AGGLVKDS 327
Query: 1174 QFSQSS------WIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLG 1223
+ + W QF A L + S R+P VR T A+L G ++ G
Sbjct: 328 ENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQG 383
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 189 bits (481), Expect = 2e-54
Identities = 80/210 (38%), Positives = 123/210 (58%), Gaps = 6/210 (2%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGYPKKQETFAR 941
+LN VS G + A++G SG+GKTTL+D ++GR GG T G I +G P+K + F +
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 1001
Y Q+DI P +T+ E+L ++A LRL P S+ + E + L +L R +G
Sbjct: 82 CVAYVRQDDILLPGLTVRETLTYTAILRL-PRKSSDAIRKKRVEDVLLRDLALTR---IG 137
Query: 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1061
V G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A ++ T+ R V+
Sbjct: 138 GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVI 197
Query: 1062 CTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091
TIHQP D+F FD + L+ G +Y G
Sbjct: 198 LTIHQPRSDLFRLFDRILLLSSGEI-VYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 170 bits (434), Expect = 2e-48
Identities = 68/216 (31%), Positives = 109/216 (50%), Gaps = 8/216 (3%)
Query: 503 ELLKANISRELLLMKRNSFV-YIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGAT 561
LKA + RE L R+ + +++LIQ +A+V+ T+F DT G G
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNL----DTSLGGLNRPGLL 56
Query: 562 FFAITMVNFNGFSEISMT-IAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWV 620
FF+I F+ + IS I + V ++ + P AY + ++++P+S L+ +++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 621 FLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLS 680
+ Y++VG + RFF +LL AS L FIA + A+ G LL LL
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 681 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEF 716
L GF + + + W +W Y+ +PLTYA A+ ANEF
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 1e-43
Identities = 65/217 (29%), Positives = 100/217 (46%), Gaps = 13/217 (5%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP--KKQ 936
L+GVS PG + L+G +GAGKTTL+ +LAG +G I + GY K+
Sbjct: 16 GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEP 73
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
R GY Q P +T+ E+L F A L + ++E R I+E++EL L
Sbjct: 74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELFGLEDKA 130
Query: 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056
V LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + +R
Sbjct: 131 NKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE 185
Query: 1057 GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093
G + + E D + ++ G I G
Sbjct: 186 GGVTILLSTHILEEAEELCDRVIILNDGKI-IAEGTP 221
|
Length = 293 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 172 bits (439), Expect = 2e-43
Identities = 162/650 (24%), Positives = 256/650 (39%), Gaps = 120/650 (18%)
Query: 104 KNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKR 163
KN I+ G L ++ E +V E + + I + N L Y + KK
Sbjct: 724 KNDIEA-GEVLGSTDLTDESDDVNDEKDMEKES-GEDIFHWRN-----LTY--EVKIKKE 774
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE-F 222
IL +V G +KPG LT L+G +GKTTLL LA ++ + G NG +D F
Sbjct: 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSF 834
Query: 223 VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
QR+ Y+ Q D H+ TVRE+L FSA R+ K+
Sbjct: 835 --QRSIGYVQQQDLHLPTSTVRESLRFSAYL--------------RQPKSVSKS------ 872
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG-EMMVGP 341
E + +K+L ++ AD +VG G++ Q+KR+T G E++ P
Sbjct: 873 -----------EKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVELVAKP 920
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI-SLLQPAPETYDLFDDIILLSD 400
L LF+DE ++GLDS T + I +R+ + G A++ ++ QP+ ++ FD ++LL
Sbjct: 921 KLLLFLDEPTSGLDSQTAWSICKLMRKLA--DHGQAILCTIHQPSAILFEEFDRLLLLQK 978
Query: 401 G-QIVYQGP----RELVLEFFASMGFR-CPKRKGVADFLQEVTSRKDQRQYWAHKEKPYR 454
G Q VY G ++ +F G CP+ A+++ EV AH
Sbjct: 979 GGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPG----AHAN---- 1030
Query: 455 FVTVQEFAEAFQSFHVGQKIS---DELRTPFDKSKSHRAALTTETYGVGKRELLKANISR 511
Q++ E +++ Q + D L K++ Y
Sbjct: 1031 ----QDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAA------------ 1074
Query: 512 ELLLMKRNSFVYIFKLIQIAFVAVVYMTL-FLRTKMHKDTVTDGGIFAGATFFAITMVNF 570
S Y FKL+ + T +L +K +F G TFF + +
Sbjct: 1075 --------SLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIF--AALFIGFTFFKVGT-SL 1123
Query: 571 NG-----FSEISMTI-------AKLPVFYKQRDF--------RFFPPWAYAIPSWILKIP 610
G F+ T+ LP F QRD R F A+ ++IP
Sbjct: 1124 QGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIP 1183
Query: 611 VSFLEVAVWVFLSYYVVGYDSNA-------GRFFKQYALLLGVNQMASALFRFIAVTGRN 663
+ + ++ F+ YY VG+ NA R + L S L + + N
Sbjct: 1184 YNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPN 1243
Query: 664 MVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVA 713
A S + LS G + + +W + Y CSP TY A+++
Sbjct: 1244 ADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLS 1293
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 9e-42
Identities = 74/242 (30%), Positives = 123/242 (50%), Gaps = 38/242 (15%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
IL DVS ++ G++ +LG SGKTTLL A++G+++ SG + +NG Q+
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
AY+ Q D + +TVRETL ++A + R+ + I+ DV ++
Sbjct: 82 CVAYVRQDDILLPGLTVRETLTYTAILRL------------PRKSSDAIRKKRVEDVLLR 129
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG-EMMVGPALAL 345
A T +G +++GISGG+++RV+ +++ P + L
Sbjct: 130 D-----------------------LALTRIGGNLVKGISGGERRRVSIAVQLLWDPKV-L 165
Query: 346 FMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405
+DE ++GLDS T +V+ L Q N ++++ QP + + LFD I+LLS G+IVY
Sbjct: 166 ILDEPTSGLDSFTALNLVSTLSQLARRNR-IVILTIHQPRSDLFRLFDRILLLSSGEIVY 224
Query: 406 QG 407
G
Sbjct: 225 SG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 3e-39
Identities = 39/91 (42%), Positives = 58/91 (63%)
Query: 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT 376
G+E +RGISGG++KRV+ E +V A L D + GLDSST +I+ C+R + T
Sbjct: 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 377 AVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
+SL Q + E YDLFD +++L +G+ +Y G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (392), Expect = 6e-39
Identities = 91/292 (31%), Positives = 163/292 (55%), Gaps = 26/292 (8%)
Query: 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLV-----------------LLNGVSGAFRPGV 895
P +L F +V Y V E MK +G +++ +LNGV+G PG
Sbjct: 37 PITLKFMDVCYRVKF-ENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGE 95
Query: 896 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF 955
+ A++G SG+GK+TL++ LAGR G TG I + ++ R G+ Q+DI P
Sbjct: 96 ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT-GFVTQDDILYPH 154
Query: 956 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1015
+T+ E+L+F + LRL + + + + + V+ + L +++G + G+S +RKR
Sbjct: 155 LTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKR 214
Query: 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1075
++IA E++ NPS++ +DEPTSGLDA AA ++ T+ + G+T+V ++HQPS +++ F
Sbjct: 215 VSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274
Query: 1076 DELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVS 1127
D + ++ G+ ++ G G + ++YFE++ NPA ++L+++
Sbjct: 275 DSVLVLSE-GRCLFFGK-GSDA---MAYFESVGFSPSFP--MNPADFLLDLA 319
|
Length = 659 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 5e-38
Identities = 81/298 (27%), Positives = 133/298 (44%), Gaps = 51/298 (17%)
Query: 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
T L VS ++PG + LLGP +GKTTLL LAG L PT SG + G+D+
Sbjct: 13 KYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDV 69
Query: 220 DEFVPQ--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+ + R Y+ Q + E+TVRE L F AR G+
Sbjct: 70 VKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS-------------------- 109
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
+EA + L++ GL+ ++ +R +SGG K+R++
Sbjct: 110 --------------KEEAEERIEELLELFGLE-----DKANKKVRTLSGGMKQRLSIALA 150
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS--LLQPAPETYDLFDDI 395
++ L +DE ++GLD + +I LR+ T ++S +L+ E +L D +
Sbjct: 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE---EAEELCDRV 207
Query: 396 ILLSDGQIVYQGPRELVLEFFASMGFRC--PKRKGVADFLQEVTSRKDQRQYWAHKEK 451
I+L+DG+I+ +G E + E F G P+R +A+ L+ + K + + E
Sbjct: 208 IILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGLKLVKGEEELAEILEA 265
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 5e-37
Identities = 45/107 (42%), Positives = 59/107 (55%), Gaps = 6/107 (5%)
Query: 155 LRIIPSKKRH----LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSG 210
R I + ILKD SGV+KPG + L+LG P SG +TLL ALA + + + V G
Sbjct: 6 WRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEG 65
Query: 211 TVTYNGHDMDEF--VPQRTAAYISQHDNHIGEMTVRETLAFSARCQG 255
+ YNG EF Y+S+ D H +TVRETL F+ RC+G
Sbjct: 66 DIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 2e-34
Identities = 157/673 (23%), Positives = 299/673 (44%), Gaps = 121/673 (17%)
Query: 148 FEDILNYLRIIPSKKRH-------LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAG 200
F+D+ NY +P++ + L +L++V+G +PG LT L+G +GKTTL+ LAG
Sbjct: 870 FDDV-NYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAG 928
Query: 201 KLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRY 260
+ + G + +G + R + Y Q+D H ++TVRE+L +SA +
Sbjct: 929 RKTGGY-IEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLR------ 981
Query: 261 EMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320
+ E+++ EK + D ++++ LD D +VG
Sbjct: 982 -LPKEVSKEEKM------------------------MFVDEVMELVELDNLKDAIVGLPG 1016
Query: 321 IRGISGGQKKRVTTG-EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG-TAV 378
+ G+S Q+KR+T E++ P++ +FMDE ++GLD+ ++ +R + ++G T V
Sbjct: 1017 VTGLSTEQRKRLTIAVELVANPSI-IFMDEPTSGLDARAAAIVMRTVRNTV--DTGRTVV 1073
Query: 379 ISLLQPAPETYDLFDDIILLS-DGQIVYQGP----RELVLEFFASM-GF-RCPKRKGVAD 431
++ QP+ + ++ FD+++L+ GQ++Y GP ++E+F ++ G + ++ A
Sbjct: 1074 CTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPAT 1133
Query: 432 FLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQK---ISDELRTPFDKSKSH 488
++ EV+S + + +FAE ++S + Q+ + EL TP +
Sbjct: 1134 WMLEVSSLAAEVKLGI------------DFAEHYKSSSLYQRNKALVKELSTPPPGASDL 1181
Query: 489 RAA--LTTETYGVGKRELLKA----------NISRELLLMKRNSFVYIFKLIQIAFVAVV 536
A + T+G K L K N+ R + F L A++
Sbjct: 1182 YFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVR-----------FFFTLA----AALM 1226
Query: 537 YMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIA-KLPVFYKQRDFRFF 595
T+F + + D + GA + A+ V N S + +A + VFY++R +
Sbjct: 1227 VGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMY 1286
Query: 596 PPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFR 655
YAI + +IP ++ + + Y +V ++ A +FF Y ++ + F
Sbjct: 1287 SALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYF----ISFFSFLYFT 1342
Query: 656 F-----IAVTGRNMVVANTFGS--FALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQ 708
+ +++T N VA F + + L L S GF + R I KWW W YW P+ +
Sbjct: 1343 YYGMMTVSLT-PNQQVAAIFAAAFYGLFNLFS--GFFIPRPKIPKWWVWYYWICPVAWTV 1399
Query: 709 NAIVANEFLGHSWKKFTQDSSETLGVQV-LKSRGFFAHEYWY---WLG--LGALFGFVLL 762
++ +++ +D+ + G + + Y Y ++G L GF +
Sbjct: 1400 YGLIVSQY------GDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVF 1453
Query: 763 LNFAYTLALTFLD 775
F + + L+
Sbjct: 1454 FAFIFAFCIRTLN 1466
|
Length = 1470 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 140 bits (353), Expect = 5e-34
Identities = 131/534 (24%), Positives = 246/534 (46%), Gaps = 64/534 (11%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
TIL V+G+ PG + +LGP SGK+TLL ALAG++ +GT+ N + + +
Sbjct: 82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILK 140
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
RT +++Q D +TVRETL F + L L +
Sbjct: 141 RTG-FVTQDDILYPHLTVRETLVFCS-----------LLRLPK----------------- 171
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG-EMMVGPALA 344
+ QE ++ + + LGL C +T++G+ IRGISGG++KRV+ EM++ P+L
Sbjct: 172 ---SLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL- 227
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE ++GLD++ +++V L T V S+ QP+ Y +FD +++LS+G+ +
Sbjct: 228 LILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL 286
Query: 405 YQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEA 464
+ G + +F S+GF ADFL ++ + Q + +EKP Q +
Sbjct: 287 FFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPN---VKQSLVAS 343
Query: 465 FQSFHVGQ-KISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKR----- 518
+ + + K + E+ + + +T+ + R + ++ +L++R
Sbjct: 344 YNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKER 403
Query: 519 --NSF--VYIFKLIQIAFVAVVYMTLFLRTKMHKD--TVTD--GGIFAGATFFAITMVNF 570
SF + +F++I A +A + H D V D G +F + F+ + F
Sbjct: 404 KHESFNTLRVFQVIAAALLAGLMW-------WHSDFRDVQDRLGLLFFISIFWGV----F 452
Query: 571 NGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYD 630
F+ + + + +F K+R + +Y + + +P+ + +++ ++Y++ G
Sbjct: 453 PSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLK 512
Query: 631 SNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGF 684
G F +LLG ++ L + + A+T + +L + GGF
Sbjct: 513 PELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGF 566
|
Length = 659 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 2e-33
Identities = 60/219 (27%), Positives = 105/219 (47%), Gaps = 38/219 (17%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNITISGYPKK 935
K+ +L SG +PG + ++G G+G +TL+ LA R T G + G+I +G P K
Sbjct: 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR-TEGNVSVEGDIHYNGIPYK 75
Query: 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 993
+ E + Y + D+H P +T+ E+L F+ +
Sbjct: 76 EFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------------ 111
Query: 994 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053
G V G+S +RKR++IA LV+ S++ D T GLD+ A +++ +R
Sbjct: 112 -------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTM 164
Query: 1054 VD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091
D T +++Q S +I++ FD++ ++ G++IY G
Sbjct: 165 ADVLKTTTFVSLYQASDEIYDLFDKVLVL-YEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 1e-31
Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 20/206 (9%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA- 940
++ +S G + L+G +GAGKTT + +L G R T +G I+GY + + A
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT----SGTAYINGYSIRTDRKAA 73
Query: 941 -RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
+ GYC Q D +T+ E L F A L+ P+ K ++ ++ ++ L
Sbjct: 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPK---SEIKEEVELLLRVLGLTDKANKR 130
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
LS +++L++A+ L+ PS++ +DEPTSGLD + + + V GR+
Sbjct: 131 AR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI-LEVRKGRS 184
Query: 1060 VVCTIHQPSIDIFEAF-DELFLMKRG 1084
++ T H S+D EA D + +M G
Sbjct: 185 IILTTH--SMDEAEALCDRIAIMSDG 208
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 4e-30
Identities = 43/107 (40%), Positives = 60/107 (56%), Gaps = 1/107 (0%)
Query: 150 DILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVS 209
L K +LK+VSG KPG LT ++GP +GK+TLL ALAG+ L VS
Sbjct: 7 RNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTG-LGVS 65
Query: 210 GTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 256
G V NG +D+ ++ Y+ Q D +TVRETL F+A+ +G+
Sbjct: 66 GEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 2e-29
Identities = 56/210 (26%), Positives = 96/210 (45%), Gaps = 23/210 (10%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET---F 939
L+ +S + G ++G +G+GK+TL+ +L G G +G + + G + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKEL 73
Query: 940 ARISGYCEQNDIHSP---FV--TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 994
R G QN P F T+ E + F PE + E R ++E +ELV L
Sbjct: 74 RRKVGLVFQN----PDDQFFGPTVEEEVAFGLENLGLPEEEIEER---VEEALELVGLEG 126
Query: 995 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054
LR LS Q++R+ IA L +P I+ +DEPT+GLD ++ ++
Sbjct: 127 LRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLK 181
Query: 1055 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
G+T++ H + E D + +++ G
Sbjct: 182 AEGKTIIIVTHDLD-LLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 1e-28
Identities = 70/208 (33%), Positives = 104/208 (50%), Gaps = 15/208 (7%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP--KKQ 936
K L+GVS PG+ L+G +GAGKTTLM +LA G I I G K+
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSS--GTIRIDGQDVLKQP 67
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
+ R GY Q P T+ E L + AWL+ + S+ K +DEV+ELV L
Sbjct: 68 QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRA 124
Query: 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056
+ +G LS R+R+ IA LV +PSI+ +DEPT+GLD I R + + +
Sbjct: 125 KKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELGE 178
Query: 1057 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
R V+ + H D+ +++ ++ +G
Sbjct: 179 DRIVILSTHIVE-DVESLCNQVAVLNKG 205
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 8e-28
Identities = 35/64 (54%), Positives = 45/64 (70%)
Query: 721 WKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKP 780
W K S+ETLG VLKSRG F YWYW+G+GAL GF +L N +TLALT+L+P K
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKS 60
Query: 781 RAVI 784
+A++
Sbjct: 61 QAIV 64
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 3e-24
Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 21/208 (10%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L VS +PG A++G +GAGK+TL+ + G + T +G+I + G P ++E R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGKPLEKER-KR 69
Query: 942 ISGYCEQN---DIHSPFVTIYESLLFSAW--LRLSPEVDSETRKMFIDEVMELVELNPLR 996
I GY Q D P +++ + +L + L + + +DE +E V L+ L
Sbjct: 70 I-GYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADKAK-VDEALERVGLSELA 126
Query: 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056
+G LS Q++R+ +A LV +P ++ +DEP +G+D + + +R
Sbjct: 127 DRQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRRE 181
Query: 1057 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
G T++ H + + E FD + L+ R
Sbjct: 182 GMTILVVTHDLGL-VLEYFDRVLLLNRT 208
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 2e-23
Identities = 61/216 (28%), Positives = 99/216 (45%), Gaps = 29/216 (13%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQET 938
+L+ +S + G +T ++G +G+GK+TL+ LAG + G + I+ K+
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE-- 73
Query: 939 FARISGYCEQNDIHSPFVTIYESLLF------SAWLRLSPEVDSETRKMFIDEVMELVEL 992
A+ Y Q+ +T+YE +L + R S E + ++E +EL+ L
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEI-----VEEALELLGL 128
Query: 993 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052
L V LS +R+R+ IA L I+ +DEPTS LD V+ +R+
Sbjct: 129 EHLADR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRD 183
Query: 1053 -TVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1084
+ G TVV +H D+ A D L L+K G
Sbjct: 184 LNREKGLTVVMVLH----DLNLAARYADHLILLKDG 215
|
Length = 258 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 98.3 bits (246), Expect = 5e-23
Identities = 72/261 (27%), Positives = 109/261 (41%), Gaps = 62/261 (23%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
KK + D+S + G + LLG +GKTT L L G+L PT SGT NG+ +
Sbjct: 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSI- 66
Query: 221 EFVPQRTAA-----YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI 275
R AA Y Q D E+TVRE L F AR +G+
Sbjct: 67 --RTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKS---------------- 108
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG 335
E + L+VLGL A+ +SGG K++++
Sbjct: 109 ------------------EIKEEVELLLRVLGLTDKANKRART-----LSGGMKRKLSLA 145
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETYDL 391
++G L +DE ++GLD ++ I + + + G ++I S+ E L
Sbjct: 146 IALIGGPSVLLLDEPTSGLDPASRRAIWDLIL---EVRKGRSIILTTHSMD----EAEAL 198
Query: 392 FDDIILLSDGQIVYQG-PREL 411
D I ++SDG++ G P+EL
Sbjct: 199 CDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 95.6 bits (239), Expect = 4e-22
Identities = 67/219 (30%), Positives = 101/219 (46%), Gaps = 32/219 (14%)
Query: 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ 936
K+ L GVS + G A++G SG+GK+TL+++L G R T G + IS +K+
Sbjct: 16 KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKE 75
Query: 937 ETFAR---ISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 991
R I G+ Q+ + P +T E++ L L+ E R+ EL+E
Sbjct: 76 LAAFRRRHI-GFVFQS--FNLLPDLTALENVELP--LLLAGVPKKERRER----AEELLE 126
Query: 992 LNPLRQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046
VGL S LS Q++R+ IA L +P II DEPT LD+ V
Sbjct: 127 R-------VGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEV 179
Query: 1047 MRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
M +R + G T+V H P ++ E D + ++ G
Sbjct: 180 MELLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 94.4 bits (236), Expect = 4e-22
Identities = 49/211 (23%), Positives = 82/211 (38%), Gaps = 49/211 (23%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKK 935
+L+ +S + G + ++G +GAGK+TL+ LAG + + G I ++ K
Sbjct: 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK 69
Query: 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 995
+ AR Y Q +EL+ L L
Sbjct: 70 E--LARKIAYVPQ-------------------------------------ALELLGLAHL 90
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055
+ LS +R+R+ +A L P I+ +DEPTS LD ++ +R
Sbjct: 91 ADR-----PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR 145
Query: 1056 -TGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085
G+TVV +H ++ D + L+K G
Sbjct: 146 ERGKTVVMVLHDLNL-AARYADRVILLKDGR 175
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 7e-22
Identities = 75/256 (29%), Positives = 114/256 (44%), Gaps = 52/256 (20%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
IL D+S I G +T +LGP SGK+TLL LAG L P SG V +G D+ P+
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPK 72
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ AY+ Q + +TV E + G P
Sbjct: 73 ELAKKLAYVPQSPSAPFGLTVYELVLL------------------------GRYP----- 103
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
++ +E I + L++LGL+ AD V + +SGG+++RV ++ A
Sbjct: 104 -HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-----LSGGERQRV-----LIARA 152
Query: 343 LA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397
LA L +DE ++ LD + +++ LR ++ G V+ +L D +IL
Sbjct: 153 LAQETPILLLDEPTSHLDIAHQIEVLELLRD-LNREKGLTVVMVLHDLNLAARYADHLIL 211
Query: 398 LSDGQIVYQGPRELVL 413
L DG+IV QG E VL
Sbjct: 212 LKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 94.5 bits (236), Expect = 8e-22
Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 62/247 (25%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ- 225
L D+S IK G L++GP SGK+TLL L G L PT SG V +G D+ + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKE 72
Query: 226 --RTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R + Q+ D+ TV E +AF G+
Sbjct: 73 LRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGL-------------------------- 106
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV-GP 341
+E + L+++GL+ D +SGGQK+RV ++ P
Sbjct: 107 --------PEEEIEERVEEALELVGLEGLR-----DRSPFTLSGGQKQRVAIAGVLAMDP 153
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------SLLQPAPETYDLFDDI 395
+ L +DE + GLD + +++ L++ + G +I LL +L D +
Sbjct: 154 DI-LLLDEPTAGLDPAGRRELLELLKK-LK-AEGKTIIIVTHDLDLL------LELADRV 204
Query: 396 ILLSDGQ 402
I+L DG+
Sbjct: 205 IVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 1e-21
Identities = 43/112 (38%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
Query: 148 FEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLK 207
+++ LNY +P K +L ++SG +KPG LT L+G +GKTTLL LAG+
Sbjct: 6 WKN-LNY--TVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKT-AGV 61
Query: 208 VSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 259
++G + NG +D+ QR+ Y+ Q D H +TVRE L FSA +G+
Sbjct: 62 ITGEILINGRPLDKNF-QRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVE 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 93.2 bits (233), Expect = 1e-21
Identities = 45/205 (21%), Positives = 78/205 (38%), Gaps = 53/205 (25%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP--KKQETF 939
L+ +S G + L+G +GAGKTTL+ ++ G + G I + G K+ E
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG----EIKVLGKDIKKEPEEV 71
Query: 940 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
R GY + +T+ E+L S
Sbjct: 72 KRRIGYLPEEPSLYENLTVRENLKLS---------------------------------- 97
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
G ++RL +A L+ +P ++ +DEPTSGLD + +R G+T
Sbjct: 98 ------GG----MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKT 147
Query: 1060 VVCTIHQPSIDIFEAFDELFLMKRG 1084
++ + H + D + ++ G
Sbjct: 148 ILLSSHILE-EAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 3e-21
Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 23/213 (10%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKK 935
+ L+ +S PG AL+G SG GKTTL+ ++AG R G I ++G P +
Sbjct: 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE 70
Query: 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 995
+ R G Q+ P +T+ E++ F LR P+ + R + E++ELV L L
Sbjct: 71 R----RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRAR---VRELLELVGLEGL 123
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-V 1054
LS Q++R+ +A L PS++ +DEP S LDA+ + ++
Sbjct: 124 LNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQR 178
Query: 1055 DTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1084
+ G T + H D EA D + +M G
Sbjct: 179 ELGITTIYVTH----DQEEALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 4e-21
Identities = 54/207 (26%), Positives = 82/207 (39%), Gaps = 51/207 (24%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
LN VS G + AL+G SG+GK+TL+ +AG G +I I G E
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSG----SILIDG-----EDLTD 66
Query: 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 1001
+ V + LF L+ V+E + L
Sbjct: 67 LEDELPPLRRRIGMV-FQDFALFP---HLT--------------VLENIAL--------- 99
Query: 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTV 1060
GLS Q++R+ +A L +P ++ +DEPTS LD V +++ G TV
Sbjct: 100 -----GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITV 154
Query: 1061 VCTIHQPSIDIFEAF---DELFLMKRG 1084
V H D+ EA D + +++ G
Sbjct: 155 VLVTH----DLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 5e-21
Identities = 52/209 (24%), Positives = 97/209 (46%), Gaps = 19/209 (9%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 942
+L +S + G +TAL+G +GAGK+TL+ + G +G I I G P ++
Sbjct: 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPVRKRRKRLR 76
Query: 943 SGYCEQNDIHSPF-----VTIYESLLFSAWLRLS--PEVDSETRKMFIDEVMELVELNPL 995
GY Q S +T+ + +L + + ++ + ++ +DE +E V + L
Sbjct: 77 IGYVPQ---KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK-VDEALERVGMEDL 132
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055
R +G LS Q++R+ +A L NP ++ +DEP +G+D + ++
Sbjct: 133 RDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ 187
Query: 1056 TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
G+TV+ H + + FD + + R
Sbjct: 188 EGKTVLMVTHDLGL-VMAYFDRVICLNRH 215
|
Length = 254 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 2e-20
Identities = 35/87 (40%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Query: 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 380
+RG+SGG++KRV+ +V LF+DE ++GLDSS+ Q+++ LR+ T + S
Sbjct: 109 LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGR-TIICS 167
Query: 381 LLQPAPETYDLFDDIILLSDGQIVYQG 407
+ QP+ E ++LFD ++LLS G+++Y G
Sbjct: 168 IHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 2e-20
Identities = 59/218 (27%), Positives = 102/218 (46%), Gaps = 29/218 (13%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK--- 934
D L+ ++ + G LTAL+G SGAGK+TL+++L G G I ++G
Sbjct: 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRDL 388
Query: 935 KQETFARISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 991
E + + + QN P++ TI E++L + P+ E I ++
Sbjct: 389 SPEAWRKQISWVSQN----PYLFAGTIRENILLAR-----PDASDEE----IIAALDQAG 435
Query: 992 LNPLRQSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046
L GL V +GLS Q +RL +A L++ S++ +DEPT+ LDA I+
Sbjct: 436 LLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQII 495
Query: 1047 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
++ ++ +TV+ H+ D +A D + ++ G
Sbjct: 496 LQALQELAK-QKTVLVITHRLE-DAADA-DRIVVLDNG 530
|
Length = 559 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 2e-20
Identities = 53/222 (23%), Positives = 91/222 (40%), Gaps = 18/222 (8%)
Query: 877 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936
+ L VS G L+G +G+GK+TL+ +L G +G + + G
Sbjct: 13 YPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG--LLKPTSGEVLVDGLDTSS 70
Query: 937 ET----FARISGYCEQNDIHSPFV-TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 991
E + G QN F T+ + + F L E + + E +ELV
Sbjct: 71 EKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFG--LENLGLPREEIEE-RVAEALELVG 127
Query: 992 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
L L LS Q++R+ IA L P I+ +DEPT+GLD + ++ ++
Sbjct: 128 LEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLK 182
Query: 1052 NTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092
+ G+T++ H + E D + ++ G+ + G
Sbjct: 183 KLKEEGGKTIIIVTHDLE-LVLEYADRVVVL-DDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 3e-20
Identities = 59/213 (27%), Positives = 96/213 (45%), Gaps = 31/213 (14%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA 940
+L+ +S G + AL G +GAGKTTL +LAG +++ G +I ++G P K +
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG----SILLNGKPIKAKERR 70
Query: 941 RISGYCEQN-DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFID-EVMELVELNPLRQS 998
+ GY Q+ D ++ E LL L+ + + + D ++ L E +PL
Sbjct: 71 KSIGYVMQDVDYQLFTDSVREELLLG--LKELDAGNEQAETVLKDLDLYALKERHPL--- 125
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1058
LS Q++RL IA L++ ++ DEPTSGLD + V +R G+
Sbjct: 126 --------SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGK 177
Query: 1059 TVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091
V+ H D FL K + + +
Sbjct: 178 AVIVITH----------DYEFLAKVCDRVLLLA 200
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 89.1 bits (222), Expect = 1e-19
Identities = 58/222 (26%), Positives = 108/222 (48%), Gaps = 19/222 (8%)
Query: 872 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIT 928
K+ G+ +K+ L V+ G A++G SG+GK+TL+++L G + T G +
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68
Query: 929 ISGYPKKQ--ETFARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFID 984
++ +K+ + + G+ QN + P +T+ E++ + + RK +
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLENVELPLLIAG---KSAGRRKRAAE 123
Query: 985 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
E++E++ L S LS Q++R+ IA L+ NP II DEPT LD++ A
Sbjct: 124 ELLEVLGLEDRLLKKK----PSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAK 179
Query: 1045 IVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085
V+ +R + G+T++ H P ++ + D + +K G
Sbjct: 180 EVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219
|
Length = 226 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 2e-19
Identities = 50/194 (25%), Positives = 84/194 (43%), Gaps = 16/194 (8%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKK 935
+L G++ A G + AL+G +GAGK+TL+ L G R G + + Y +K
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 936 QETFARIS-GYCEQN---DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 991
R G Q+ + + + + + F L L R+ + E + V
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAA--DVDQDVAFGP-LNLGLSEAEVERR--VREALTAVG 116
Query: 992 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
+ LR+ LS ++KR+ IA + P ++ +DEPT+GLD ++ +R
Sbjct: 117 ASGLRERPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILR 171
Query: 1052 NTVDTGRTVVCTIH 1065
G TVV + H
Sbjct: 172 RLRAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 4e-19
Identities = 61/213 (28%), Positives = 100/213 (46%), Gaps = 28/213 (13%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNITISGYPKKQ---E 937
+L +S PG A++G SG+GK+TL+ +L G Y G I + G
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL----YKPQQGRILLDGVDLNDIDLA 543
Query: 938 TFARISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSET--RKMFIDEVMELVEL 992
+ R GY Q+ PF+ +I E++ +PE E + E +E
Sbjct: 544 SLRRQVGYVLQD----PFLFSGSIRENIALG-----NPEATDEEIIEAAQLAGAHEFIEN 594
Query: 993 NPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
P+ + VG G + LS QR+RL +A L++ P I+ +DE TS LD AI+++ +
Sbjct: 595 LPMGYDTPVGEGG-ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL 653
Query: 1052 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+ GRTV+ H+ S + D + ++ +G
Sbjct: 654 -QILQGRTVIIIAHRLS--TIRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 5e-19
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 1005 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1064
V LS QR+R+ +A L+ NP ++ +DEPTSGLD + ++ +R + GRTV+
Sbjct: 78 VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVT 137
Query: 1065 HQPSIDIFEAFDELFLMKRG 1084
H P A D + ++K G
Sbjct: 138 HDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 9e-19
Identities = 56/191 (29%), Positives = 87/191 (45%), Gaps = 16/191 (8%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP--K 934
++GV+ R G + +G +GAGKTT + +L R T G ++GY +
Sbjct: 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG----TARVAGYDVVR 59
Query: 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 994
+ R G Q +T E+L L P+ ++E R +E++EL EL
Sbjct: 60 EPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEER---AEELLELFELGE 116
Query: 995 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054
VG S R+RL IA L+ P ++F+DEPT+GLD R + +R
Sbjct: 117 AADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK 171
Query: 1055 DTGRTVVCTIH 1065
+ G T++ T H
Sbjct: 172 EEGVTILLTTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 3e-18
Identities = 66/254 (25%), Positives = 108/254 (42%), Gaps = 50/254 (19%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-- 224
LKDVS I+ G LL+GP SGK+TLL L G L PT SG V +G D
Sbjct: 19 ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLL 75
Query: 225 --QRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
++ + Q+ D+ + TV + +AF G+ RE+
Sbjct: 76 ELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGL-----------PREE---------- 114
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT-TGEMMVG 340
++ E L+++GL+ D +SGGQK+RV G + +G
Sbjct: 115 ---IEERVAE----------ALELVGLEELL-----DRPPFNLSGGQKQRVAIAGVLAMG 156
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
P + L +DE + GLD +++ L++ + G +I + + D +++L D
Sbjct: 157 PEI-LLLDEPTAGLDPKGRRELLELLKK-LKEEGGKTIIIVTHDLELVLEYADRVVVLDD 214
Query: 401 GQIVYQGPRELVLE 414
G+I+ G +
Sbjct: 215 GKILADGDPAEIFN 228
|
Length = 235 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 3e-18
Identities = 70/275 (25%), Positives = 115/275 (41%), Gaps = 49/275 (17%)
Query: 808 GSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKK-KGMVLPFEPHSLTFDEVVYSVD 866
G+ H G +++++L A RP K V SL F V +
Sbjct: 281 GAQYHARADG--------VAAAEALFAVLDAAPRPLAGKAPVTAAPAPSLEFSGVSVA-- 330
Query: 867 MPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT 924
+ L VS PG AL+G SGAGK+TL+++L G T G I
Sbjct: 331 ----------YPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA 380
Query: 925 -GNITISGYPKKQETFARISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRK 980
+ ++ +++ + Q+ PF+ TI E++ + P+
Sbjct: 381 VNGVPLADAD--ADSWRDQIAWVPQH----PFLFAGTIAENIRLAR-----PDASDAE-- 427
Query: 981 MFIDEVMELVELNPLRQSL-VGL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1034
I E +E L+ +L GL G +GLS Q +RL +A + + ++ +DEP
Sbjct: 428 --IREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEP 485
Query: 1035 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1069
T+ LDA A V+ +R + GRTV+ H+ ++
Sbjct: 486 TAHLDAETEAEVLEALRA-LAQGRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 83.7 bits (208), Expect = 6e-18
Identities = 67/254 (26%), Positives = 107/254 (42%), Gaps = 55/254 (21%)
Query: 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
+ LK VS I+ G ++GP SGK+TLL L G PT SG V +G D
Sbjct: 11 GGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTD 67
Query: 219 MDEFVPQRTAA-------YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREK 271
+ + + AA ++ Q N + ++T E + GV + RRE+
Sbjct: 68 ISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKK-------ERRER 120
Query: 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKR 331
A + L+ +GL + E+ SGGQ++R
Sbjct: 121 AEEL---------------------------LERVGLGDRLNHYPS-EL----SGGQQQR 148
Query: 332 VTTGE-MMVGPALALFMDEISTG-LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389
V + P + + DE TG LDS T +++ LR+ ++ +GT ++ ++ PE
Sbjct: 149 VAIARALANDPKI-ILADE-PTGNLDSETGKEVMELLRE-LNKEAGTTIV-VVTHDPELA 204
Query: 390 DLFDDIILLSDGQI 403
+ D II L DG+I
Sbjct: 205 EYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 7e-18
Identities = 62/209 (29%), Positives = 95/209 (45%), Gaps = 24/209 (11%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP--KKQETF 939
+ GVS R G + L+G +GAGKTT + +L + T G T++G+ ++
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG----RATVAGHDVVREPREV 71
Query: 940 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
R G Q+ +T +E+L A L V R+ IDE+++ V L L
Sbjct: 72 RRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL 128
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GR 1058
V S R+RL IA LV P ++F+DEPT GLD + A V + + G
Sbjct: 129 V-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM 183
Query: 1059 TVVCTIHQPSIDIFEA---FDELFLMKRG 1084
T++ T H + EA D + ++ G
Sbjct: 184 TILLTTH----YMEEAEQLCDRVAIIDHG 208
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 7e-18
Identities = 68/284 (23%), Positives = 110/284 (38%), Gaps = 75/284 (26%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
L D+S IK G L LLGP +GK+TLL +AG P +G + NG + +
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFD------ 68
Query: 228 AAYISQHDNHIG----------EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+ ++ D +G MTV + +AF + + E +E R + +
Sbjct: 69 VSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRK-----ERPSEAEIRARVEEL-- 121
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
L + + D +SGGQ++RV
Sbjct: 122 ------------------------------LRLVQLEGLADRYPAQLSGGQRQRVA---- 147
Query: 338 MVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392
+ ALA L +DE LD+ ++ LR+ +H G + + E +L
Sbjct: 148 -LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRK-LHDRLGVTTVFVTHDQEEALELA 205
Query: 393 DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436
D +++L+ G+I GP + V + P + VA FL EV
Sbjct: 206 DRVVVLNQGRIEQVGPPDEVYDH--------PASRFVARFLGEV 241
|
Length = 345 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 83.3 bits (207), Expect = 1e-17
Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 36/201 (17%)
Query: 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ- 936
LV L+ VS + RPG + L+G +GAGKTTL ++++G R T G + I+G P +
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEI 72
Query: 937 ------ETFARISGYCEQNDIHSPF--VTIYESLL--------FSAWLRLSPEVDSETRK 980
TF Q F +T+ E+++ L + + E R+
Sbjct: 73 ARLGIGRTF--------QIP--RLFPELTVLENVMVAAQARTGSGLLLARARREEREARE 122
Query: 981 MFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040
+E++E V L L G LS Q++RL IA L +P ++ +DEP +GL+
Sbjct: 123 R-AEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNP 176
Query: 1041 RAAAIVMRTVRNTVDTGRTVV 1061
+ +R + G TV+
Sbjct: 177 EETEELAELIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 2e-17
Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 33/218 (15%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQE 937
+L GV R G + A++G SG+GK+TL+ ++ G R G I G +
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELY 73
Query: 938 TFARISGYCEQ-----NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL 992
R G Q + + T++E++ F LR E ++ +E+ E+V
Sbjct: 74 RLRRRMGMLFQSGALFDSL-----TVFENVAF--PLR-------EHTRLSEEEIREIVLE 119
Query: 993 NPLRQSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
+ VGL G + LS +KR+ +A L +P ++ DEPT+GLD A+ ++
Sbjct: 120 ---KLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVID 176
Query: 1048 RTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+R+ G T + H F D + ++ G
Sbjct: 177 DLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDG 213
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 2e-17
Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 12/186 (6%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFA- 940
++GVS +PG +T L+G +GAGKTT + +LAG G T+ G+ +E
Sbjct: 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD--AGFATVDGFDVVKEPAEA 76
Query: 941 -RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
R G+ + +T E+L + A L + + ++E+ + + + L
Sbjct: 77 RRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRR 133
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
VG G ST R+++ IA LV +P ++ +DEPT+GLD A + +R G+
Sbjct: 134 VG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKC 188
Query: 1060 VVCTIH 1065
++ + H
Sbjct: 189 ILFSTH 194
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 2e-17
Identities = 57/243 (23%), Positives = 101/243 (41%), Gaps = 41/243 (16%)
Query: 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV 913
+ F V +S ++ L+ VS R G A++G G+GK+TL+ +
Sbjct: 1 GRIEFRNVSFSYP-----------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKL 49
Query: 914 LAG--RKTGGYI-TGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRL 970
LAG + T G + I + I GY Q D+ + T+ +++ A
Sbjct: 50 LAGLYKPTSGSVLLDGTDIRQLDP-ADLRRNI-GYVPQ-DVTLFYGTLRDNITLGA---- 102
Query: 971 SPEVDSETRKMFIDEVMELVELNPLRQSLVGLP---------GVSGLSTEQRKRLTIAVE 1021
P D E ++ EL + + P GLS QR+ + +A
Sbjct: 103 -PLADDE-------RILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARA 154
Query: 1022 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081
L+ +P I+ +DEPTS +D + + +R + +T++ H+PS+ + D + +M
Sbjct: 155 LLNDPPILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPSLL--DLVDRIIVM 211
Query: 1082 KRG 1084
G
Sbjct: 212 DSG 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 2e-17
Identities = 62/193 (32%), Positives = 92/193 (47%), Gaps = 22/193 (11%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---KKQETFA 940
L+GVS PG A++G SG+GK+TL+ LAG + G +T+ G P Q+
Sbjct: 351 LDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDP--LQGEVTLDGVPVSSLDQDEVR 408
Query: 941 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 1000
R C Q D H T+ E+L + P+ E + +E V L ++L
Sbjct: 409 RRVSVCAQ-DAHLFDTTVRENLRLAR-----PDATDEE----LWAALERVGLADWLRALP 458
Query: 1001 -GL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054
GL G + LS +R+RL +A L+A+ I+ +DEPT LDA A ++ +
Sbjct: 459 DGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLA-A 517
Query: 1055 DTGRTVVCTIHQP 1067
+GRTVV H
Sbjct: 518 LSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 3e-17
Identities = 54/190 (28%), Positives = 88/190 (46%), Gaps = 12/190 (6%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGN-ITISGYPKKQETFA 940
L+G++ + G L+G SGAGK+TL+ ++ + T G I N +S + +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76
Query: 941 RIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
R G Q+ P +YE++ F+ L ++ E RK V +EL L
Sbjct: 77 RRKIGVVFQDFRLLPDRNVYENVAFA--LEVTGVPPREIRK----RVPAALELVGLSHKH 130
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
LP + LS +++R+ IA +V +P+I+ DEPT LD +M ++ G T
Sbjct: 131 RALP--AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188
Query: 1060 VVCTIHQPSI 1069
VV H +
Sbjct: 189 VVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 81.4 bits (202), Expect = 4e-17
Identities = 66/230 (28%), Positives = 102/230 (44%), Gaps = 40/230 (17%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L +S + G AL+G SG GK+TL+ ++AG R T G + + G P R
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG----EVLVDGEPVTGPGPDR 75
Query: 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 1001
GY Q D P++T+ +++ L L +E R + EL+EL VG
Sbjct: 76 --GYVFQQDALLPWLTVLDNVALG--LELQGVPKAEAR----ERAEELLEL-------VG 120
Query: 1002 LPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-D 1055
L G LS R+R+ +A L +P ++ +DEP S LDA + + + +
Sbjct: 121 LSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE 180
Query: 1056 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFE 1105
TG+TV+ H DI EA +FL + V L +++ E
Sbjct: 181 TGKTVLLVTH----DIDEA---VFL----ADRVVV--LSARPGRIVAEVE 217
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 79.7 bits (198), Expect = 5e-17
Identities = 49/205 (23%), Positives = 82/205 (40%), Gaps = 54/205 (26%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETF 939
+L VS +PG A++G SG+GK+TL+ +L T G I + + E+
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD--LESL 74
Query: 940 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
+ Y Q + LFS +R + +
Sbjct: 75 RKNIAYVPQ-----------DPFLFSGTIR--------------ENI------------- 96
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
LS QR+R+ IA L+ +P I+ +DE TS LD A+++ +R + G+T
Sbjct: 97 --------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA-LAKGKT 147
Query: 1060 VVCTIHQPSIDIFEAFDELFLMKRG 1084
V+ H+ S D + ++ G
Sbjct: 148 VIVIAHRLS--TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 6e-17
Identities = 70/268 (26%), Positives = 102/268 (38%), Gaps = 69/268 (25%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T+LK V ++ G + ++GP SGK+TLL + G L P SG V +G D+
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEA 70
Query: 226 ------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
R + Q +TV E +AF R T L+ E
Sbjct: 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLR---------EHTRLSEEE--------- 112
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
++ I E L+ +GL D + +SGG KKRV
Sbjct: 113 -----IREIVLEK----------LEAVGLRGAEDLYPAE-----LSGGMKKRV------- 145
Query: 340 GPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390
ALA L DE + GLD + I + L +++ G I + +
Sbjct: 146 --ALARALALDPELLLYDEPTAGLDPIASGVIDD-LIRSLKKELGLTSIMVTHDLDTAFA 202
Query: 391 LFDDIILLSDGQIVYQGPRELVLEFFAS 418
+ D I +L DG+IV +G E E AS
Sbjct: 203 IADRIAVLYDGKIVAEGTPE---ELRAS 227
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 6e-17
Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 27/224 (12%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GNITISGYPKKQET 938
L ++ PG A++G SGAGK+TL+ + + G I +IT K ++
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77
Query: 939 FARISGYCEQNDIHSPFVTIYESLL---------FSAWLRLSPEVDSETRKMFIDEVMEL 989
RI G Q+ +T+ E++L + + L E D E ++ V L
Sbjct: 78 RRRI-GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV-GL 135
Query: 990 VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1049
+ R LS Q++R+ IA L P +I DEP + LD + + VM
Sbjct: 136 ADKAYQR--------ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDY 187
Query: 1050 VRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092
++ + G TV+ +HQ +D+ + + + + + G+ ++ G
Sbjct: 188 LKRINKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 8e-17
Identities = 54/205 (26%), Positives = 87/205 (42%), Gaps = 33/205 (16%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIT-ISGYPKKQETFA 940
L VS + PG AL+G SGAGK+TL+ L G T G + + T I+ K
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQL 76
Query: 941 RI-SGYCEQNDIHSPFVTIYESLL---------FSAWLRLSPEVDSETRKMFIDEVMELV 990
R G Q +++ E++L + + L P+ + + +
Sbjct: 77 RRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE-------KQRALAAL 129
Query: 991 ELNPLRQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
E VGL LS Q++R+ IA L+ P +I DEP + LD ++
Sbjct: 130 ER-------VGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQ 182
Query: 1046 VMRTVRN-TVDTGRTVVCTIHQPSI 1069
VM ++ + G TV+ ++HQ +
Sbjct: 183 VMDLLKRINREEGITVIVSLHQVDL 207
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 9e-17
Identities = 60/207 (28%), Positives = 101/207 (48%), Gaps = 21/207 (10%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT--GNITISGYPKKQE---T 938
L+ VS RPG AL+G +GAGK+TL +L T Y+ G I+++G+ ++
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLL----TRLYVAQEGQISVAGHDLRRAPRAA 72
Query: 939 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
AR+ +Q + +++ ++L + A L ++ R I E++ + L
Sbjct: 73 LARLGVVFQQPTL-DLDLSVRQNLRYHAALHGLSRAEARAR---IAELLARLGLAERADD 128
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 1057
V L+ R+R+ IA L+ P+++ +DEPT GLD + A + VR D G
Sbjct: 129 KVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQG 183
Query: 1058 RTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+V+ H +D EA D L ++ RG
Sbjct: 184 LSVLWATHL--VDEIEADDRLVVLHRG 208
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 9e-17
Identities = 72/257 (28%), Positives = 104/257 (40%), Gaps = 62/257 (24%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
++DVS + G +T LLG +GKTTLL +A L P SG VT +G D R
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDT-----VRD 69
Query: 228 AAYISQHDNHIG----------EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+++ + IG +T RE L + AR L L+R+E A I
Sbjct: 70 PSFVRR---KIGVLFGERGLYARLTARENLKYFAR----------LNGLSRKEIKARI-- 114
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
A + K L L D VG S G K++V
Sbjct: 115 -----------------AELS-----KRLQLLEYLDRRVG-----EFSTGMKQKVAIARA 147
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397
+V L +DE ++GLD T + + ++Q N G AVI E L D +I+
Sbjct: 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQL--KNEGRAVIFSSHIMQEVEALCDRVIV 205
Query: 398 LSDGQIVYQGPRELVLE 414
L G++V +G E +
Sbjct: 206 LHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 1e-16
Identities = 62/237 (26%), Positives = 101/237 (42%), Gaps = 29/237 (12%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKK 935
++ +S + G L+G SG GKTTL+ ++AG + + G I I+ P
Sbjct: 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP-- 73
Query: 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 995
R G Q+ P +T+ E++ F L++ ++ K ++E +ELV L
Sbjct: 74 --PEKRPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEGF 129
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TV 1054
LS Q++R+ +A LV P ++ +DEP S LDA+ + + ++
Sbjct: 130 ADRK-----PHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQR 184
Query: 1055 DTGRTVVCTIHQPSIDIFEAF---DELFLMKRG-------GQEIYVGPLGRHSCHLI 1101
+ G T V H D EA D + +M G +EIY P R I
Sbjct: 185 ELGITFVYVTH----DQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 1e-16
Identities = 64/221 (28%), Positives = 101/221 (45%), Gaps = 21/221 (9%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIT-ISGYPKKQETFA 940
L V+ G + A++G SGAGK+TL+ L G T G I N I+ K+
Sbjct: 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79
Query: 941 RIS-GYCEQNDIHSPFVTIYESLLF------SAWLRLSPEVDSETRKMFIDEVMELVELN 993
R G Q P +++ E++L S W L E + +D L +
Sbjct: 80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDA---LERVG 136
Query: 994 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR-- 1051
L ++ S LS Q++R+ IA LV P II DEP + LD +A VM ++
Sbjct: 137 ILDKAYQR---ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDI 193
Query: 1052 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092
N D G TV+ +HQ +D+ + + + + + G+ ++ GP
Sbjct: 194 NQED-GITVIVNLHQ--VDLAKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 1e-16
Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 17/185 (9%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L+ +S + G + +G +GAGKTT M ++ G + G IT Y K E R
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNIEALRR 73
Query: 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 1001
I E + P +T E+L A L + IDEV+++V L + V
Sbjct: 74 IGALIEAPGFY-PNLTARENLRLLARLLGIRKKR-------IDEVLDVVGLKDSAKKKVK 125
Query: 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1061
G S ++RL IA+ L+ NP ++ +DEPT+GLD + + + D G TV+
Sbjct: 126 -----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVL 180
Query: 1062 CTIHQ 1066
+ H
Sbjct: 181 ISSHL 185
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 2e-16
Identities = 76/258 (29%), Positives = 113/258 (43%), Gaps = 55/258 (21%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
LKDVS I PG L+GP +GK+TLL L G ++PT SG+V +G D+++ +
Sbjct: 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGK 71
Query: 226 --RTA----AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI-KPD 278
R I Q N I ++V E + L RR +
Sbjct: 72 ALRQLRRQIGMIFQQFNLIERLSVLENVLSGR--------------LGRRSTWRSLFGLF 117
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE-M 337
P + K A L+ +GL A D++ SGGQ++RV +
Sbjct: 118 PKEE---KQRALA----------ALERVGLLDKAYQRA-DQL----SGGQQQRVAIARAL 159
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG-TAVISLLQPAPETYDL----F 392
M P L L DE LD +++ Q+++ L++ I+ G T ++SL Q DL
Sbjct: 160 MQQPKLIL-ADEPVASLDPASSRQVMDLLKR-INREEGITVIVSLHQV-----DLAREYA 212
Query: 393 DDIILLSDGQIVYQGPRE 410
D I+ L DG+IV+ GP
Sbjct: 213 DRIVGLKDGRIVFDGPPA 230
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 2e-16
Identities = 73/276 (26%), Positives = 114/276 (41%), Gaps = 66/276 (23%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+LKDV+ I+ G +LLGP GK+TLL +AG +PT SG + +G D+ + P+
Sbjct: 17 EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPE 73
Query: 226 -RTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
R A + Q H MTV E +AF + +GV E+ +R K
Sbjct: 74 KRGIAMVFQNYALYPH------MTVYENIAFGLKLRGVPKA-----EIDKRVKEV----- 117
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
K+LGL+ + +SGGQ++RV +
Sbjct: 118 ------------------------AKLLGLEHLLNR-----KPLQLSGGQRQRVALARAL 148
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398
V +DE + LD+ + + + + +H GT I + E L D I+++
Sbjct: 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEI-KKLHERLGTTTIYVTHDQVEAMTLADRIVVM 207
Query: 399 SDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFL 433
+DG+I G P EL + P VA F+
Sbjct: 208 NDGRIQQVGTPLEL---------YERPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 78.3 bits (194), Expect = 4e-16
Identities = 71/266 (26%), Positives = 108/266 (40%), Gaps = 72/266 (27%)
Query: 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-PTLKVSGTVTY 214
+I + LKDV+ I+ G ++GP SGK+T LL L G LD PT SG V
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKST-LLNLLGGLDKPT---SGEVLI 64
Query: 215 NGHDMDEFVPQRTAA-------YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELA 267
NG D+ + + A ++ Q+ N + ++TV E + G
Sbjct: 65 NGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAG-------- 116
Query: 268 RREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGG 327
RR++AA + L+VLGL+ + +SGG
Sbjct: 117 RRKRAA--------------------------EELLEVLGLEDRLL----KKKPSELSGG 146
Query: 328 QKKRVTTGEMMVGPALA-----LFMDEISTG-LDSSTTFQIVNCLRQNIHINSGTAVI-- 379
Q++RV + AL + DE TG LDS T +++ LR+ ++ G +I
Sbjct: 147 QQQRV-----AIARALINNPKIILADEP-TGNLDSKTAKEVLELLRE-LNKERGKTIIMV 199
Query: 380 --SLLQPAPETYDLFDDIILLSDGQI 403
PE D +I L DG+I
Sbjct: 200 THD-----PELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 5e-16
Identities = 71/273 (26%), Positives = 109/273 (39%), Gaps = 54/273 (19%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
L DV+ + G L LLGP SGK+TLL +AG P SG + NG D +
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHAR 70
Query: 226 -RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
R ++ QH +TVR+ +AF E+ + KA
Sbjct: 71 DRKIGFVFQHYALFKHLTVRDNIAFG-------------LEIRKHPKAK----------- 106
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
+KA E L+++ L +GD +SGGQ++RV +
Sbjct: 107 IKARVEE----------LLELVQL-----EGLGDRYPNQLSGGQRQRVALARALAVEPQV 151
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE LD+ ++ + LR+ T V + E ++ D I+++S+G+I
Sbjct: 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVF-VTHDQEEAMEVADRIVVMSNGKIE 210
Query: 405 YQG-PRELVLEFFASMGFRCPKRKGVADFLQEV 436
G P E+ + P V FL EV
Sbjct: 211 QIGSPDEV---------YDHPANPFVMSFLGEV 234
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 5e-16
Identities = 60/195 (30%), Positives = 87/195 (44%), Gaps = 19/195 (9%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETF 939
VL +G+S G L G +G+GKTTL+ ++AG G I + G
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAG----TIKLDGGDIDDPDV 71
Query: 940 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
A Y + P +T+ E+L F A E+D I +E V L PL
Sbjct: 72 AEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELD-------IAAALEAVGLAPL---- 120
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
LP LS Q++R+ +A LV+N I +DEPT+ LDA A A+ +R + G
Sbjct: 121 AHLPF-GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGI 179
Query: 1060 VVCTIHQPSIDIFEA 1074
V+ H P + + A
Sbjct: 180 VIAATHIP-LGLPGA 193
|
Length = 207 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 7e-16
Identities = 61/272 (22%), Positives = 104/272 (38%), Gaps = 76/272 (27%)
Query: 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH 217
P+ + L DVS IK G L+G SGK+TL A+ G L PT SG++ ++G
Sbjct: 11 FPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGK 67
Query: 218 DMDEFVPQ------RTAAYISQHD-----NHIGEMTVRETLAFSARCQGVGTRYEMLTEL 266
D+ + + + + Q D N MT+ E +A R G ++ E +
Sbjct: 68 DLLKLSRRLRKIRRKEIQMVFQ-DPMSSLNPR--MTIGEQIAEPLRIHGKLSKKEAR-KE 123
Query: 267 ARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISG 326
A G+ + V + +SG
Sbjct: 124 AVLLLLVGVGLPEE-----------------------------------VLNRYPHELSG 148
Query: 327 GQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI-- 379
GQ++RV + ALA L DE ++ LD S QI++ L++ + G ++
Sbjct: 149 GQRQRV-----AIARALALNPKLLIADEPTSALDVSVQAQILDLLKK-LQEELGLTLLFI 202
Query: 380 ----SLLQPAPETYDLFDDIILLSDGQIVYQG 407
++ + D + ++ G+IV +G
Sbjct: 203 THDLGVVA------KIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 8e-16
Identities = 71/274 (25%), Positives = 112/274 (40%), Gaps = 42/274 (15%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
L V+ G L+G SG GK+TL+ ++AG T G I ++ P ++
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK---- 74
Query: 941 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 1000
R QN P +T+YE++ F LR P+ + + R + EV +L+ L L
Sbjct: 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKR---VKEVAKLLGLEHLLNRKP 131
Query: 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGR 1058
LS QR+R+ +A LV P + +DEP S LDA+ ++MR+ + G
Sbjct: 132 -----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK-LRVLMRSEIKKLHERLGT 185
Query: 1059 TVVCTIHQPSIDIFEA---FDELFLMKRGG-------QEIYVGPLGRHSCHL-ISYFEAI 1107
T + H D EA D + +M G E+Y +L ++ F
Sbjct: 186 TTIYVTH----DQVEAMTLADRIVVMNDGRIQQVGTPLELY-----ERPANLFVAGFIGS 236
Query: 1108 PGVQKIKDGYNPATWMLEVSAASQELA----LGI 1137
P + +K L + + LGI
Sbjct: 237 PPMNFLKAEVKADGNGLSIPEDKKVALEQVILGI 270
|
Length = 338 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 8e-16
Identities = 55/199 (27%), Positives = 92/199 (46%), Gaps = 25/199 (12%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQE 937
V+L+ ++ G + A++G SG+GK+TL++++ + G Y+ G T KK
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71
Query: 938 TFARIS-GYCEQNDIHSPFV-----TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 991
F R GY QN F T+ E+L L+ E R+ E +E V
Sbjct: 72 KFRREKLGYLFQN-----FALIENETVEENLDLG--LKYKKLSKKEKREKKK-EALEKVG 123
Query: 992 LN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050
LN L+Q + LS +++R+ +A ++ P +I DEPT LD + V+ +
Sbjct: 124 LNLKLKQK------IYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLL 177
Query: 1051 RNTVDTGRTVVCTIHQPSI 1069
D G+T++ H P +
Sbjct: 178 LELNDEGKTIIIVTHDPEV 196
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 8e-16
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 23/201 (11%)
Query: 893 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ---ETFARISGYCE 947
+T + G SGAGK+TL+ +AG + GG I N T+ +K+ R G
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 948 QNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 1007
Q P + + E+L F R D ++ +DE+++L+ L+ L +
Sbjct: 82 QQYALFPHLNVRENLAFGL-KRKRNRED----RISVDELLDLLGLDHLLNR-----YPAQ 131
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 1066
LS +++R+ +A L A P ++ +DEP S LD ++ ++ + V+ H
Sbjct: 132 LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHD 191
Query: 1067 PSIDIFEAF---DELFLMKRG 1084
S EA D + +M+ G
Sbjct: 192 LS----EAEYLADRIVVMEDG 208
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 1e-15
Identities = 61/219 (27%), Positives = 101/219 (46%), Gaps = 17/219 (7%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L+ +S + G L AL+G SGAGK+TL+ ++AG G I N + R
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77
Query: 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 1001
G+ Q+ P +T+ +++ F +R ++E R ++E++ LV+L L
Sbjct: 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRAR-VEELLRLVQLEGLADR--- 133
Query: 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 1060
P + LS QR+R+ +A L P ++ +DEP LDA+ + R +R D G T
Sbjct: 134 YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTT 191
Query: 1061 VCTIHQPSIDIFEAFDELFLMKRGG-------QEIYVGP 1092
V H + E D + ++ +G E+Y P
Sbjct: 192 VFVTHDQE-EALELADRVVVLNQGRIEQVGPPDEVYDHP 229
|
Length = 345 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 1e-15
Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 14/182 (7%)
Query: 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP-KKQETFAR--IS 943
VS G +T L+G +GAGKTTL+ ++A +G +TI G + +F R I
Sbjct: 21 VSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD--SGKVTIDGVDTVRDPSFVRRKIG 78
Query: 944 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 1003
+ +++ +T E+L + A L + + R I E+ + ++L VG
Sbjct: 79 VLFGERGLYAR-LTARENLKYFARLNGLSRKEIKAR---IAELSKRLQLLEYLDRRVG-- 132
Query: 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1063
ST ++++ IA LV +PSI+ +DEPTSGLD R ++ + GR V+ +
Sbjct: 133 ---EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFS 189
Query: 1064 IH 1065
H
Sbjct: 190 SH 191
|
Length = 245 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 2e-15
Identities = 61/244 (25%), Positives = 101/244 (41%), Gaps = 46/244 (18%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
L D+S ++PG LLGP GKTTLL +AG P SG + +G D+ P
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPE 70
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
+R + Q +TV E +AF + +GV E+ R +
Sbjct: 71 RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKA-----EIRARVREL----------- 114
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV-GPAL 343
L+++GL+ + + +SGGQ++RV + P+L
Sbjct: 115 ------------------LELVGLE-----GLLNRYPHELSGGQQQRVALARALAREPSL 151
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L +DE + LD+ ++ L++ + G I + E L D I ++++G+I
Sbjct: 152 -LLLDEPLSALDAKLREELREELKE-LQRELGITTIYVTHDQEEALALADRIAVMNEGRI 209
Query: 404 VYQG 407
V G
Sbjct: 210 VQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 2e-15
Identities = 54/203 (26%), Positives = 82/203 (40%), Gaps = 37/203 (18%)
Query: 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ- 936
L +N VS RPG + L+G +GAGKTTL +++ G + + G + I+G P +
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76
Query: 937 ------ETFARISGYCEQNDIHSPFVTIYESLL--------FSAWLRLSPEVDSETRKMF 982
TF Q P +T+ E++ S L E
Sbjct: 77 ARLGIARTF--------QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREAR- 127
Query: 983 IDEVMEL---VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
+ EL V L L G LS Q++RL IA L P ++ +DEP +GL+
Sbjct: 128 -ERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLN 181
Query: 1040 ARAAAIVMRTVRNTVDT-GRTVV 1061
+ +R D G T++
Sbjct: 182 PEETEELAELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 4e-15
Identities = 60/254 (23%), Positives = 107/254 (42%), Gaps = 49/254 (19%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+L+D+S ++ G +T L+GP +GK+TLL A+ G L P+ SG + G + + +
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKR 74
Query: 226 RTAAYISQHDNHIGE--MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
Y+ Q + +TV++ + G + L +++K
Sbjct: 75 LRIGYVPQKSSVDRSFPITVKDVVLL-----GRYGKKGWFRRLNKKDKE----------- 118
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
+ EA L+ +G+ + D I +SGGQK+RV +
Sbjct: 119 -------KVDEA-------LERVGM-----EDLRDRQIGELSGGQKQRVLLARALAQNPD 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL---LQPAPETYDLFDDIILLSD 400
L +DE TG+D + +I + L++ + G V+ + L FD +I L +
Sbjct: 160 LLLLDEPFTGVDVAGQKEIYDLLKE-LR-QEGKTVLMVTHDLGLVM---AYFDRVICL-N 213
Query: 401 GQIVYQGPRELVLE 414
++ GP E VL
Sbjct: 214 RHLIASGPPEEVLT 227
|
Length = 254 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 4e-15
Identities = 62/190 (32%), Positives = 96/190 (50%), Gaps = 15/190 (7%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET 938
DKLV+ +G+S + G L+G +GAGKTT + +L G G+I++ G P
Sbjct: 19 DKLVV-DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPSRA 75
Query: 939 -FARIS-GYCEQNDIHSPFVTIYESLL-FSAWLRLSPEVDSETRKMFIDEVMELVELNPL 995
AR G Q D P T+ E+LL F + LS + R + V L+E L
Sbjct: 76 RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSA---AAARAL----VPPLLEFAKL 128
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055
V LS ++RLT+A LV +P ++ +DEPT+GLD +A ++ +R+ +
Sbjct: 129 ENK--ADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA 186
Query: 1056 TGRTVVCTIH 1065
G+T++ T H
Sbjct: 187 RGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 4e-15
Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 21/192 (10%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETF 939
+++GV PG LT L+G +G+GK+TL+ +LAG R G + + + G ++
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRAR-- 73
Query: 940 ARISGYCEQNDIHSPFVTIYESLLF------SAWLRLSPEVDSETRKMFIDEVMELVELN 993
AR EQ+ + +T+ + + S W SP + + EL L
Sbjct: 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALAR--TELSHL- 130
Query: 994 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053
+S LS +R+R+ +A L P ++ +DEPT+ LD RA + VR
Sbjct: 131 -------ADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVREL 183
Query: 1054 VDTGRTVVCTIH 1065
TG TVV +H
Sbjct: 184 AATGVTVVAALH 195
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 5e-15
Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 15/191 (7%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 936
+ L + +S G + G +GAGKTTL+ +LAG R G + +
Sbjct: 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV--YWQGEPIQNVR 70
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
E++ + Y +T E+L F W R ++ T I E + V L L
Sbjct: 71 ESYHQALLYLGHQPGIKTELTALENLHF--WQRFHGSGNAAT----IWEALAQVGLAGLE 124
Query: 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056
LP V LS Q++R+ +A ++ + +DEP + LD A++ +
Sbjct: 125 D----LP-VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQ 179
Query: 1057 GRTVVCTIHQP 1067
G V+ T HQP
Sbjct: 180 GGIVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 6e-15
Identities = 55/213 (25%), Positives = 97/213 (45%), Gaps = 22/213 (10%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETF 939
LL+GVS RPG + A++G +GAGK+TL+ L+G G +T + ++ +P ++
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEE--L 73
Query: 940 ARISGYCEQNDIHS-PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
AR QN + PF T+ E + S E ++ + + +L+ L
Sbjct: 74 ARHRAVLPQNSSLAFPF-TVQEVVQMGRIPHRSGREPEEDERI-AAQALAATDLSGLAGR 131
Query: 999 LVGLPGVSGLSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052
LS +++R+ +A L V + +F+DEPTS LD +R R
Sbjct: 132 D-----YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQ 186
Query: 1053 TVDTGRTVVCTIHQPSIDIFEAF-DELFLMKRG 1084
G V+ +H +++ + D + L+ +G
Sbjct: 187 LAREGGAVLAVLH--DLNLAAQYADRIVLLHQG 217
|
Length = 259 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 6e-15
Identities = 67/266 (25%), Positives = 112/266 (42%), Gaps = 64/266 (24%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKV-SGTVTYNGHDMDEFVPQ 225
ILK V+ +K G + ++GP SGK+TL +AG P+ +V SGT+ + G D+ E P
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG--HPSYEVTSGTILFKGQDLLELEPD 72
Query: 226 RTAA---YIS-QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
A +++ Q+ I ++ E L + ARR + + +
Sbjct: 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALN--------------ARRSA----RGEEPL 114
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR-----GISGGQKKRVTTGE 336
D + + L +LG+D +E + G SGG+KKR +
Sbjct: 115 D--LLDFLKLLKAK-------LALLGMD--------EEFLNRSVNEGFSGGEKKRNEILQ 157
Query: 337 MMV-GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS-------LLQPAPET 388
M + P LA+ +DEI +GLD + + + + +I+ ++P
Sbjct: 158 MALLEPKLAI-LDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKP---- 212
Query: 389 YDLFDDIILLSDGQIVYQGPRELVLE 414
D + +L DG+IV G EL E
Sbjct: 213 ----DYVHVLLDGRIVKSGDVELAKE 234
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 7e-15
Identities = 62/255 (24%), Positives = 102/255 (40%), Gaps = 49/255 (19%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
LKDV+ I G + ++GP +GK+TLL +L G +DPT SG + +NG + +
Sbjct: 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGK 74
Query: 225 -----QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+R I Q N + ++V E + +L L +
Sbjct: 75 ELRKLRRDIGMIFQQFNLVPRLSVLENV--------------LLGRLGYTSTWRSLFGLF 120
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
+ +A+ + ++ Y + A T+ SGGQ++RV +V
Sbjct: 121 SKEDKAQALDAL-ERVGILDKAYQR-------ASTL---------SGGQQQRVAIARALV 163
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL----FDDI 395
+ DE LD + ++++ L+ I+ G VI L DL D I
Sbjct: 164 QQPKIILADEPVASLDPESAKKVMDILKD-INQEDGITVIVNLH----QVDLAKKYADRI 218
Query: 396 ILLSDGQIVYQGPRE 410
I L G+IV+ GP
Sbjct: 219 IGLKAGRIVFDGPAS 233
|
Length = 258 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 7e-15
Identities = 62/191 (32%), Positives = 99/191 (51%), Gaps = 17/191 (8%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP-KKQE 937
DK V+ NG+S G L+G +GAGK+T+ ++ G + G IT+ G P +
Sbjct: 53 DKAVV-NGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARA 109
Query: 938 TFARIS-GYCEQNDIHSPFVTIYESLL-FSAWLRLSPEVDSETRKMFIDEVM-ELVELNP 994
AR G Q D T+ E+LL F + +S TR+ I+ V+ L+E
Sbjct: 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMS------TRE--IEAVIPSLLEFAR 161
Query: 995 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054
L +S VS LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ +
Sbjct: 162 L-ESKADAR-VSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL 219
Query: 1055 DTGRTVVCTIH 1065
G+T++ T H
Sbjct: 220 ARGKTILLTTH 230
|
Length = 340 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 74.8 bits (185), Expect = 7e-15
Identities = 62/264 (23%), Positives = 99/264 (37%), Gaps = 69/264 (26%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
IL VS + G + LLG +GKTTLL + G L P SG++ ++G D+ P
Sbjct: 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPP 69
Query: 225 QRTA----AYISQHDNHIGEMTVRETL--AFSARCQGVGTR-----YEMLTELA-RREKA 272
A Y+ + E+TV E L AR + YE+ L RR++
Sbjct: 70 HERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQL 129
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV 332
AG T+ SGG+++ +
Sbjct: 130 AG---------------------------------------TL---------SGGEQQML 141
Query: 333 TTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHIN-SGTAVISLLQPAPETYD 390
+M P L L +DE S GL +I +R+ + G ++ + Q A +
Sbjct: 142 AIARALMSRPKL-LLLDEPSEGLAPKIVEEIFEAIRE---LRDEGVTILLVEQNARFALE 197
Query: 391 LFDDIILLSDGQIVYQGPRELVLE 414
+ D +L G++V +G +L
Sbjct: 198 IADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 1e-14
Identities = 74/277 (26%), Positives = 115/277 (41%), Gaps = 67/277 (24%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
T + D+S IK G LLGP GKTTLL +AG P+ SG + +G D+ + VP
Sbjct: 19 TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITD-VPP 74
Query: 225 -QRTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+R + Q H MTV E +AF + + ++ K A I
Sbjct: 75 EKRPIGMVFQSYALFPH------MTVEENVAFGLK-------------VRKKLKKAEI-- 113
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
KA E L+++GL+ AD +SGGQ++RV
Sbjct: 114 --------KARVEE----------ALELVGLEGFADRKPHQ-----LSGGQQQRVALARA 150
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397
+V L +DE + LD+ Q+ L++ + G + + E + D I +
Sbjct: 151 LVPEPKVLLLDEPLSALDAKLREQMRKELKE-LQRELGITFVYVTHDQEEALAMSDRIAV 209
Query: 398 LSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFL 433
++DG+I G P E+ + P + VADF+
Sbjct: 210 MNDGRIEQVGTPEEI---------YERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 1e-14
Identities = 47/181 (25%), Positives = 74/181 (40%), Gaps = 34/181 (18%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFA 940
L +S G +TAL+G SG GK+TL+ +L G G + + G
Sbjct: 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75
Query: 941 RIS-----GYCEQNDIHSPFV-TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 994
+ G Q +PF +IY+++ + L K +DE +E
Sbjct: 76 VLELRRRVGMVFQKP--NPFPGSIYDNVAYGLRLHG------IKLKEELDERVE------ 121
Query: 995 LRQSL--VGLPG-------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
++L L GLS Q++RL +A L P ++ +DEPTS LD + A
Sbjct: 122 --EALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAK 179
Query: 1046 V 1046
+
Sbjct: 180 I 180
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 1e-14
Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 24/212 (11%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----TGNITISGYPKKQETF 939
L+ +S + G + L+G +GAGKTT + ++ G I +G + G P
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG------IILPDSGEVLFDGKPLDIAAR 69
Query: 940 ARISGYCEQNDIHSPFVTIYESLLFSAWLR-LSPEVDSETRKMFIDEVMELVELNPLRQS 998
RI GY + P + + + L++ A L+ L E E R+ IDE +E +EL+
Sbjct: 70 NRI-GYLPEERGLYPKMKVIDQLVYLAQLKGLKKE---EARRR-IDEWLERLELSEYANK 124
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1058
V LS ++++ ++ +P ++ +DEP SGLD ++ +R G+
Sbjct: 125 -----RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGK 179
Query: 1059 TVVCTIHQPSIDIFEAF-DELFLMKRGGQEIY 1089
TV+ + HQ +++ E D + L+ +G +Y
Sbjct: 180 TVILSTHQ--MELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 2e-14
Identities = 67/265 (25%), Positives = 118/265 (44%), Gaps = 59/265 (22%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
L D++ IK G+LT L+G +GK+TLL L G L PT G + NG D+ + P
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPE 391
Query: 225 --QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
++ +++SQ+ ++ T+RE + + + + E + + P PD
Sbjct: 392 AWRKQISWVSQN-PYLFAGTIRENILLA---RPDASD-EEIIAALDQAGLLEFVPKPD-- 444
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
GL DT++G+ G+SGGQ +R+ ++ PA
Sbjct: 445 ------------------------GL----DTVIGEGG-AGLSGGQAQRLALARALLSPA 475
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-----FDDIIL 397
L +DE + LD+ T I+ L++ + V+ + T+ L D I++
Sbjct: 476 SLLLLDEPTAHLDAETEQIILQALQE---LAKQKTVLVI------THRLEDAADADRIVV 526
Query: 398 LSDGQIVYQG-PRELVLE--FFASM 419
L +G++V QG EL + +A++
Sbjct: 527 LDNGRLVEQGTHEELSEKQGLYANL 551
|
Length = 559 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 74.0 bits (183), Expect = 2e-14
Identities = 61/212 (28%), Positives = 95/212 (44%), Gaps = 44/212 (20%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
L L DVS ++PG + L+GP +GKTTL ++G L PT SG+V ++G D+ P
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPP 69
Query: 225 QRTAAY-IS---QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
A I Q E+TV E + +A+ + T +L ARRE+
Sbjct: 70 HEIARLGIGRTFQIPRLFPELTVLENVMVAAQAR---TGSGLLLARARREER-------- 118
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE---- 336
EA + L+ +GL AD G+ +S GQ++R+ E
Sbjct: 119 -------------EARERAEELLERVGLADLADRPAGE-----LSYGQQRRL---EIARA 157
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 368
+ P L L +DE + GL+ T ++ +R+
Sbjct: 158 LATDPKL-LLLDEPAAGLNPEETEELAELIRE 188
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 2e-14
Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 11/175 (6%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT--GNITISGYPKKQETF 939
L+ VS + + G L+G SG+GK+TL + G + T G I G + + ++
Sbjct: 21 LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
Query: 940 ARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 997
+ Q+ + S P +TI E + + E RK + ++ V L
Sbjct: 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIH-GKLSKKEARKEAVLLLLVGVGLPEEVL 139
Query: 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052
+ P LS QR+R+ IA L NP ++ DEPTS LD A ++ ++
Sbjct: 140 NR--YP--HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKK 190
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 2e-14
Identities = 62/221 (28%), Positives = 103/221 (46%), Gaps = 22/221 (9%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
L+ VS G L AL+G SG+GKTTL+ ++AG R G I G + P ++
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE---- 73
Query: 941 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR-KMFIDEVMELVELNPLRQSL 999
R G+ Q+ +T+++++ F ++ E E + + E+++LV+L+ L
Sbjct: 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADR- 132
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 1058
P + LS QR+R+ +A L P ++ +DEP LDA+ + R +R D
Sbjct: 133 --YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHV 188
Query: 1059 TVVCTIHQPSIDIFEAFDELFLMKRG-------GQEIYVGP 1092
T V H + E D + +M +G E+Y P
Sbjct: 189 TTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEVYDHP 228
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 2e-14
Identities = 57/188 (30%), Positives = 95/188 (50%), Gaps = 18/188 (9%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
+NGVS + + G + L+G +GAGKTT ++ G + G I I+ P + A
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKR--A 73
Query: 941 RIS-GYCEQNDIHSPF--VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 997
R+ GY Q S F +T+ E++L A L + + + R+ ++E++E + LR+
Sbjct: 74 RLGIGYLPQE--ASIFRKLTVEENIL--AVLEIR-GLSKKEREEKLEELLEEFHITHLRK 128
Query: 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1057
S S LS +R+R+ IA L NP + +DEP +G+D A + + ++ D G
Sbjct: 129 SKA-----SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRG 183
Query: 1058 RTVVCTIH 1065
V+ T H
Sbjct: 184 IGVLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 2e-14
Identities = 50/209 (23%), Positives = 77/209 (36%), Gaps = 57/209 (27%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ---E 937
+L VS + PG A++G SG+GK+TL ++ G R T G + + G Q
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG----RVRLDGADISQWDPN 72
Query: 938 TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 997
GY Q+D LFS + E +
Sbjct: 73 ELGDHVGYLPQDDE-----------LFS------------------GSIAENI------- 96
Query: 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1057
LS QR+RL +A L NP I+ +DEP S LD + + + G
Sbjct: 97 ----------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAG 146
Query: 1058 RTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086
T + H+P + D + +++ G
Sbjct: 147 ATRIVIAHRPE--TLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 2e-14
Identities = 54/216 (25%), Positives = 93/216 (43%), Gaps = 24/216 (11%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 936
+ +L ++ + G A++G SG GK+TL+ ++AG + T G + + G P
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSG----EVLLDGRPVTG 69
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
GY Q D P++T+ +++ LR + ++ R E++ELV L
Sbjct: 70 PGPDI--GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARER---AKELLELVGLAGFE 124
Query: 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-D 1055
P LS R+R+ IA L P ++ +DEP LDA + + +
Sbjct: 125 DKY---PHQ--LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEE 179
Query: 1056 TGRTVVCTIHQPSIDIFEAF---DELFLMKRGGQEI 1088
T +TV+ H D+ EA D + ++ I
Sbjct: 180 TRKTVLLVTH----DVDEAVYLADRVVVLSNRPGRI 211
|
Length = 248 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 5e-14
Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 11/170 (6%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
++ VS R G L+G SG+GK+TL +LAG + G I + +
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 941 RISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
R Q+ S P +T+ + L LR+ R+ + E++ELV L P +
Sbjct: 367 RRIQMVFQDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPP--EF 422
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048
L P LS QR+R+ IA L P ++ +DEP S LD A V+
Sbjct: 423 LDRYPH--ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN 470
|
Length = 539 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 7e-14
Identities = 70/261 (26%), Positives = 115/261 (44%), Gaps = 67/261 (25%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP--- 224
L +VS I+PG ++G SGK+TLL L G PT G+V +G D+ + P
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADL 537
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG----IKPDPD 280
+R Y+ Q D + T+R+ +A A E + A AG ++ PD
Sbjct: 538 RRNIGYVPQ-DPRLFYGTLRDNIALGAP----YADDEEILRAAEL---AGVTEFVRRHPD 589
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
GLD +G E R +SGGQ++ V ++
Sbjct: 590 --------------------------GLD----MQIG-ERGRSLSGGQRQAVALARALLR 618
Query: 341 -PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------SLLQPAPETYDLFD 393
P + L +DE ++ +D+ + + + L++ + +G ++ SLL DL D
Sbjct: 619 DPPI-LLLDEPTSAMDNRSEERFKDRLKRWL---AGKTLVLVTHRTSLL-------DLVD 667
Query: 394 DIILLSDGQIVYQGPRELVLE 414
II++ +G+IV GP++ VLE
Sbjct: 668 RIIVMDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 7e-14
Identities = 55/203 (27%), Positives = 83/203 (40%), Gaps = 40/203 (19%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GNITISGYPKKQ--- 936
LL+ VS RPG + A++G +GAGK+TL+ L+ G ++ G + ++G P
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS-----GELSPDSGEVRLNGRPLADWSP 71
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFS------AWLRLSPEVDSETR-KMFIDEVMEL 989
AR Q HS SL F + +P S + +
Sbjct: 72 AELARRRAVLPQ---HS-------SLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQ 121
Query: 990 VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAA 1043
V+L L P +SG EQ +R+ +A L P + +DEPTS LD
Sbjct: 122 VDLAHLAGRD--YPQLSG--GEQ-QRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQ 176
Query: 1044 AIVMRTVRN-TVDTGRTVVCTIH 1065
V+R R + G V+ +H
Sbjct: 177 HHVLRLARQLAHERGLAVIVVLH 199
|
Length = 258 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 1e-13
Identities = 61/250 (24%), Positives = 102/250 (40%), Gaps = 57/250 (22%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE---- 221
+L+DVS +KPG ++GP +GK+TLL A+ G L PT SG++ G +++
Sbjct: 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEKERKR 69
Query: 222 --FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+VPQR + + ++VR+ + + +
Sbjct: 70 IGYVPQRRSI------DRDFPISVRDVVL-----------------MGLYGHKGLFRRLS 106
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
D KA E L+ +GL + + D I +SGGQ++RV +V
Sbjct: 107 KAD---KAKVDEA----------LERVGL-----SELADRQIGELSGGQQQRVLLARALV 148
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL--LQPAPETYDLFDDIIL 397
L +DE G+D T I LR+ + T ++ L + FD ++L
Sbjct: 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRE-LRREGMTILVVTHDLGLVL---EYFDRVLL 204
Query: 398 LSDGQIVYQG 407
L + +V G
Sbjct: 205 L-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 1e-13
Identities = 68/269 (25%), Positives = 110/269 (40%), Gaps = 65/269 (24%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
LT + DVS ++PG + L+GP +GKTTL + G P+ SGTV + G D+ P
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPP 73
Query: 225 QRTAAY-IS---QHDNHIGEMTVRETLAFSARCQG-----VGTRYEMLTELARREKAAGI 275
R A I+ Q +TV E +A A + +G E RE+A +
Sbjct: 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERAREL 133
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG 335
L+ +GL AD G+ +S GQ++R+
Sbjct: 134 ---------------------------LEFVGLGELADRPAGN-----LSYGQQRRL--- 158
Query: 336 E----MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV------ISLLQPA 385
E + P L L +DE + GL+ T ++ +R + G + + L+
Sbjct: 159 EIARALATQPKL-LLLDEPAAGLNPEETEELAELIR-ELRDRGGVTILLIEHDMKLV--- 213
Query: 386 PETYDLFDDIILLSDGQIVYQGPRELVLE 414
L D I++L+ G+++ +G E V
Sbjct: 214 ---MGLADRIVVLNYGEVIAEGTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 71/258 (27%), Positives = 102/258 (39%), Gaps = 49/258 (18%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-R 226
L DVS I G L LLGP SGKTTLL +AG P SGT+ + G D + Q R
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQER 74
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
++ QH MTV + +AF R V R E E R K +
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFGLR---VKPRSERPPEAEIRAKVHEL----------- 120
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346
LK++ LD AD +SGGQ++RV + L
Sbjct: 121 ----------------LKLVQLDWLADRYPAQ-----LSGGQRQRVALARALAVEPKVLL 159
Query: 347 MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI--- 403
+DE LD+ ++ LR+ +H + + E ++ D +++++ G+I
Sbjct: 160 LDEPFGALDAKVRKELRRWLRR-LHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQV 218
Query: 404 -----VYQGPR-ELVLEF 415
VY P V F
Sbjct: 219 GTPDEVYDHPASPFVYSF 236
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 21/167 (12%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQETF 939
LN +S + PG L L+G +GAGKTTLMDV+ G R G G+ ++ P+ +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR--I 78
Query: 940 ARISGYCEQNDIHSPF--VTIYESLLF------SAWLRLSPEVDSETRKMFIDEVMELVE 991
AR G + + F +T+ E+L S + L + +E R+ IDE++ +
Sbjct: 79 ARA-GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRR-IDELLATIG 136
Query: 992 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038
L R L L LS Q++ L I + L +P ++ +DEP +G+
Sbjct: 137 LGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 2e-13
Identities = 51/204 (25%), Positives = 84/204 (41%), Gaps = 41/204 (20%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP--- 224
L+ VS + PG L+GP +GK+TLL L G +DPT G++ NG + +
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSW 394
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
+ A++ QH + T+ E + E+ + AG+
Sbjct: 395 RDQIAWVPQHP-FLFAGTIAENIRL-------ARPDASDAEIREALERAGL--------- 437
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
+ +A Q GL DT +G+ G+SGGQ +R+ + A
Sbjct: 438 DEFVAALPQ-------------GL----DTPIGEGG-AGLSGGQAQRLALARAFLRDAPL 479
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQ 368
L +DE + LD+ T +++ LR
Sbjct: 480 LLLDEPTAHLDAETEAEVLEALRA 503
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 68/252 (26%), Positives = 106/252 (42%), Gaps = 63/252 (25%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-- 225
L +VS I+ G ++G SGK+TLL LAG PT SG+V +G D+ + P
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADL 76
Query: 226 -RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP----DPD 280
R Y+ Q D + T+R+ + A + +L R + AG+ P+
Sbjct: 77 RRNIGYVPQ-DVTLFYGTLRDNITLGA---PLADDERIL----RAAELAGVTDFVNKHPN 128
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
GL D +G E RG+SGGQ++ V ++
Sbjct: 129 --------------------------GL----DLQIG-ERGRGLSGGQRQAVALARALLN 157
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI-----SLLQPAPETYDLFDDI 395
L +DE ++ +D ++ ++ LRQ + T +I SLL DL D I
Sbjct: 158 DPPILLLDEPTSAMDMNSEERLKERLRQ--LLGDKTLIIITHRPSLL-------DLVDRI 208
Query: 396 ILLSDGQIVYQG 407
I++ G+IV G
Sbjct: 209 IVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 2e-13
Identities = 52/214 (24%), Positives = 78/214 (36%), Gaps = 48/214 (22%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+ +S + G +L GP SGKTTLL +AG L P +GT+ +G D+D+
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP---AAGTIKLDGGDIDDPDVA 72
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
Y+ + +TV E L F A G + DI
Sbjct: 73 EACHYLGHRNAMKPALTVAENLEFWAAFLG--------------------GEELDIAA-- 110
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALAL 345
A+ +GL A G +S GQK+RV ++V
Sbjct: 111 -ALEA---------------VGLAPLAHLPFGY-----LSAGQKRRVALARLLVSNRPIW 149
Query: 346 FMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
+DE + LD++ +R H+ G VI
Sbjct: 150 ILDEPTAALDAAAVALFAELIR--AHLAQGGIVI 181
|
Length = 207 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 67/254 (26%), Positives = 110/254 (43%), Gaps = 45/254 (17%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+L VS ++PG + +LGP +GK+TLL AL+G+L P SG VT NG ++ + P+
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPE 71
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
A H + +LAF Q V ++ R +G +P+ D +
Sbjct: 72 ELA-------RHRAVLPQNSSLAFPFTVQEV-------VQMGRIPHRSGREPEEDERIAA 117
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM------V 339
+A+A + GL R +SGG+++RV ++ V
Sbjct: 118 QALAATD------------LSGL--------AGRDYRTLSGGEQQRVQLARVLAQLWPPV 157
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399
LF+DE ++ LD + + RQ G AV+++L D I+LL
Sbjct: 158 PSGRWLFLDEPTSALDIAHQHHTLRLARQLAR--EGGAVLAVLHDLNLAAQYADRIVLLH 215
Query: 400 DGQIVYQGPRELVL 413
G+++ G + VL
Sbjct: 216 QGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 2e-13
Identities = 64/217 (29%), Positives = 101/217 (46%), Gaps = 31/217 (14%)
Query: 867 MPEEMKVQ--GV---LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKT 919
E ++ GV D+++L +GV G + A++G SG+GK+TL+ ++ G R
Sbjct: 3 ASPEPLIEVRGVTKSFGDRVIL-DGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD 61
Query: 920 GGYI---TGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDS 976
G I +I + E R+ G Q +T++E++ F LR
Sbjct: 62 KGEILIDGEDIPQLSEEELYEIRKRM-GVLFQQGALFSSLTVFENVAFP--LR------- 111
Query: 977 ETRKMFIDEVMELVELNPLRQSLVGLPGV------SGLSTEQRKRLTIAVELVANPSIIF 1030
E K+ + ELV + LVGL G S LS RKR+ +A + +P ++F
Sbjct: 112 EHTKLPESLIRELVLMK---LELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLF 168
Query: 1031 MDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQ 1066
+DEPTSGLD +A ++ +R D G TV+ H
Sbjct: 169 LDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHD 205
|
Length = 263 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-13
Identities = 72/297 (24%), Positives = 109/297 (36%), Gaps = 87/297 (29%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKV-SGTVTYNGHDMDEFVPQ 225
ILK V+ +K G + ++GP SGK+TL + G P +V G + ++G D
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMG--HPKYEVTEGEILFDGED------- 69
Query: 226 RTAAYISQHDNHIGEMTVRE------TLAFS--ARCQGVGTRYEMLTELARREKAAGIKP 277
I E++ E LAF GV A +
Sbjct: 70 ------------ILELSPDERARAGIFLAFQYPVEIPGV--TNSDFLRAAMNARRGARGI 115
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR-----GISGGQKKRV 332
P+ +K A ++LGLD +E + G SGG+KKR
Sbjct: 116 LPEFIKELKEKA--------------ELLGLD--------EEFLERYVNEGFSGGEKKRN 153
Query: 333 TTGEMMV-GPALALFMDEISTGLDSSTTFQI---VNCLRQNIHINSGTAVISLLQPAPET 388
++++ P LA+ +DE +GLD + +N LR+ G +I+ Q
Sbjct: 154 EILQLLLLEPKLAI-LDEPDSGLDIDALKIVAEGINALREE---GRGVLIITHYQ----- 204
Query: 389 YDLFDDII-----LLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRK 440
L D I +L DG+IV G EL E + KG + V
Sbjct: 205 -RLLDYIKPDKVHVLYDGRIVKSGDPELAEEL---------EEKGYDWLKEVVGGEA 251
|
Length = 251 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-13
Identities = 57/219 (26%), Positives = 84/219 (38%), Gaps = 53/219 (24%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GNITISG---- 931
E K +L GV+ + G + A+MG +G+GK+TL + G Y +T G I G
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP--KYEVTEGEILFDGEDIL 71
Query: 932 -----------------YPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAW--LRLSP 972
YP I G VT L +A R +
Sbjct: 72 ELSPDERARAGIFLAFQYP------VEIPG-----------VTN-SDFLRAAMNARRGAR 113
Query: 973 EVDSETRKMFIDEVMELVELNP--LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1030
+ E K + E EL+ L+ L + + G S ++KR I L+ P +
Sbjct: 114 GILPEFIK-ELKEKAELLGLDEEFLERYV----NE-GFSGGEKKRNEILQLLLLEPKLAI 167
Query: 1031 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1069
+DEP SGLD A IV + + GR V+ H +
Sbjct: 168 LDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 2e-13
Identities = 61/246 (24%), Positives = 112/246 (45%), Gaps = 31/246 (12%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 943
++ +S PG + L+G +GAGKTT ++ G G IT +G P QE RI
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIKNRI- 74
Query: 944 GYC-EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL 1002
GY E+ ++ P +T+ + L + A L+ P+ + + + + +E R +VG
Sbjct: 75 GYLPEERGLY-PKMTVEDQLKYLAELKGMPKAEIQKK---LQAWLE-------RLEIVGK 123
Query: 1003 PG--VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1060
+ LS ++++ ++ P ++ +DEP SGLD ++ + + G T+
Sbjct: 124 KTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATI 183
Query: 1061 VCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL-------GR-----HSCHLISYFEAIP 1108
+ + H+ + E D L ++K+ GQ + G + G+ S + IP
Sbjct: 184 IFSSHRME-HVEELCDRLLMLKK-GQTVLYGTVEDIRRSFGKKRLVIESDLSLEELANIP 241
Query: 1109 GVQKIK 1114
G+ KI
Sbjct: 242 GILKIT 247
|
Length = 300 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 49/214 (22%), Positives = 87/214 (40%), Gaps = 32/214 (14%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
L ++ + +PG A++G +GAGKTTL+++L G I I I +K +
Sbjct: 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRK--SLR 76
Query: 941 RISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 997
+ G Q F+ TI E++ + E + +
Sbjct: 77 SMIGVVLQ----DTFLFSGTIMENIRLG---------RPNATDEEVIEAAKEAGAHDFIM 123
Query: 998 SL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050
L +G LS +R+ L IA ++ +P I+ +DE TS +D ++ +
Sbjct: 124 KLPNGYDTVLG-ENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEAL 182
Query: 1051 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+ GRT + H+ S I A D++ ++ G
Sbjct: 183 EKLMK-GRTSIIIAHRLST-IKNA-DKILVLDDG 213
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 59/211 (27%), Positives = 103/211 (48%), Gaps = 21/211 (9%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP----KKQE 937
V+L+ VS G +T+++G +GAGK+TL+ + R +G ITI G +E
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLS-MMSRLLK-KDSGEITIDGLELTSTPSKE 72
Query: 938 TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 997
++S ++N I+S T+ + + F + + E R++ I+E +E + L L
Sbjct: 73 LAKKLSILKQENHINSRL-TVRDLVGFGRFPYSQGRLTKEDRRI-INEAIEYLHLEDLSD 130
Query: 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT- 1056
+ LS QR+R IA+ L + + +DEP + LD + + +M+ +R D
Sbjct: 131 RYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADEL 185
Query: 1057 GRTVVCTIHQPSIDIFEA---FDELFLMKRG 1084
G+T+V +H DI A D + +K G
Sbjct: 186 GKTIVVVLH----DINFASCYSDHIVALKNG 212
|
Length = 252 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 3e-13
Identities = 62/254 (24%), Positives = 105/254 (41%), Gaps = 62/254 (24%)
Query: 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD---- 218
L VS + PG + LLGP +GKTTL+ LA P+ SGT+ +G D
Sbjct: 11 GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQ 66
Query: 219 MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ +R Y+ Q TVRE L + A +G+ P
Sbjct: 67 PQKL--RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGI--------------------PS 104
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
++ + D L+++ L + I +SGG ++RV + +
Sbjct: 105 KEVK---ARV-----------DEVLELVNL-----GDRAKKKIGSLSGGMRRRVGIAQAL 145
Query: 339 VG-PALALFMDEISTGLDSSTTFQIVNCLRQ----NIHINSGTAVISLLQPAPETYDLFD 393
VG P++ L +DE + GLD + N L + I I S T ++ ++ L +
Sbjct: 146 VGDPSI-LIVDEPTAGLDPEERIRFRNLLSELGEDRIVILS-THIVEDVE------SLCN 197
Query: 394 DIILLSDGQIVYQG 407
+ +L+ G++V++G
Sbjct: 198 QVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 3e-13
Identities = 63/251 (25%), Positives = 95/251 (37%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG---HDMDEF 222
I+ V PG LT LLGP SGK+TLL LAG L P +GTV G H +
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRR 71
Query: 223 VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R A + Q + +TVR+ +A G P
Sbjct: 72 ARARRVALVEQDSDTAVPLTVRDVVAL------------------------GRIP----- 102
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+ A + + D L L AD + +SGG+++RV +
Sbjct: 103 -HRSLWAGDSPHDAAVVDRALARTELSHLADRDMST-----LSGGERQRVHVARALAQEP 156
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE + LD + + +R+ +G V++ L D +++L G+
Sbjct: 157 KLLLLDEPTNHLDVRAQLETLALVRE--LAATGVTVVAALHDLNLAASYCDHVVVLDGGR 214
Query: 403 IVYQGPRELVL 413
+V GP VL
Sbjct: 215 VVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 3e-13
Identities = 58/182 (31%), Positives = 92/182 (50%), Gaps = 11/182 (6%)
Query: 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFARIS 943
VS G + L+G +GAGKTT ++ G R G I + IS P I
Sbjct: 22 VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI- 80
Query: 944 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 1003
GY Q +++Y++L+ A L++ ++ +E R+ +E+ME + LR S+
Sbjct: 81 GYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM---- 134
Query: 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1063
G S LS +R+R+ IA L ANP I +DEP +G+D + + R + + D+G V+ T
Sbjct: 135 GQS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLIT 193
Query: 1064 IH 1065
H
Sbjct: 194 DH 195
|
Length = 241 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 3e-13
Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 35/217 (16%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L+GVS RPG + AL+G +GAGK+TLM +L+G G I I G P
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDS----GEILIDGKP------VA 73
Query: 942 ISGYCEQND-----IH-----SPFVTIYESLLFSAWL-RLSPEVDSETRKMFID--EVME 988
S + +H P +++ E++ R +D + M E++
Sbjct: 74 FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLID--RKAMRRRARELLA 131
Query: 989 LVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
+ L+ V LS QR+ + IA L + ++ +DEPT+ L + +
Sbjct: 132 RLGLDIDPDTL------VGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLF 185
Query: 1048 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+R G ++ H+ ++FE D + +++ G
Sbjct: 186 DLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRDG 221
|
Length = 500 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 3e-13
Identities = 51/179 (28%), Positives = 76/179 (42%), Gaps = 25/179 (13%)
Query: 872 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITI 929
V G + LN VS G ++G SG+GK+TL +LAG + + +G+I +
Sbjct: 11 IVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILL 66
Query: 930 SG--YPKKQET--FARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFI 983
G K+ F R Q+ S P T+ L + I
Sbjct: 67 DGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQR-----I 121
Query: 984 DEVMELVELNP--LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040
E+++ V L P L + L G G QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 122 AELLDQVGLPPSFLDRRPHELSG--G----QRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 4e-13
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI- 379
+RG+S Q+KR+T G + LF+DE ++GLDS + IV L+ + +SG A++
Sbjct: 106 LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLK-KL-ADSGQAILC 163
Query: 380 SLLQPAPETYDLFDDIILL-SDGQIVYQG 407
++ QP+ ++ FD ++LL G+ VY G
Sbjct: 164 TIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 4e-13
Identities = 67/256 (26%), Positives = 109/256 (42%), Gaps = 55/256 (21%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--- 222
LK+++ I PG ++GP +GK+TLL + ++P+ SG++ G D+ +
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGK 72
Query: 223 ----VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ +R I QH N I +TV E + R T +L + +K
Sbjct: 73 KLRKLRRRI-GMIFQHYNLIERLTVLENV-LHGRLGYKPTWRSLLGRFSEEDK------- 123
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE-M 337
+A+ L+ +GL A D++ SGGQ++RV +
Sbjct: 124 ------ERAL------------SALERVGLADKAYQRA-DQL----SGGQQQRVAIARAL 160
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG-TAVISLLQPAPETYDL----F 392
P L L DE LD T+ Q+++ L+ I+ G T +I+L Q DL
Sbjct: 161 AQQPDLIL-ADEPIASLDPKTSKQVMDYLK-RINKEDGITVIINLHQ-----VDLAKKYA 213
Query: 393 DDIILLSDGQIVYQGP 408
D I+ L G+IV+ G
Sbjct: 214 DRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 4e-13
Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 25/187 (13%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GNITISGYPKKQET 938
L GVS G + AL+G +GAGKTTL+ + G G I +IT
Sbjct: 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDIT------GLPP 69
Query: 939 FARIS---GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNP 994
R GY + P +T+ E+LL A+ R + + ++ V EL L
Sbjct: 70 HERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFPRLKE 124
Query: 995 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054
R+ L G LS +++ L IA L++ P ++ +DEP+ GL + + +R
Sbjct: 125 RRKQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELR 179
Query: 1055 DTGRTVV 1061
D G T++
Sbjct: 180 DEGVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 4e-13
Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 16/191 (8%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 936
+ +L G+S G + G +G GKTTL+ +LAG R G + N T +++
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL--AEQR 68
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
+ R Y P ++ E+L F W + I++ + V L
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHF--WAA-----IHGGAQRTIEDALAAVGLTGFE 121
Query: 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056
LS Q++RL +A ++ + +DEPT+ LD A++ +R +
Sbjct: 122 DLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR 176
Query: 1057 GRTVVCTIHQP 1067
G V+ T HQ
Sbjct: 177 GGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 4e-13
Identities = 56/187 (29%), Positives = 97/187 (51%), Gaps = 14/187 (7%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK-KQETFA 940
V++N +S G L+G +GAGK+T+ +L G + G IT+ G P + A
Sbjct: 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLA 75
Query: 941 RIS-GYCEQNDIHSPFVTIYESLL-FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
R++ G Q D P T+ E+LL F + +S + + I ++E L +S
Sbjct: 76 RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMS----TREIEAVIPSLLEFARL----ES 127
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1058
+ V+ LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+
Sbjct: 128 KADVR-VALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGK 186
Query: 1059 TVVCTIH 1065
T++ T H
Sbjct: 187 TILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 5e-13
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM---DEF 222
T L D+S ++ G + LLGP +GKTTL+ + G L P SG + G D+ E
Sbjct: 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEE 70
Query: 223 VPQRTAAYISQHDNHIGEMTVRETLAFS 250
V +R Y+ + + +TVRE L S
Sbjct: 71 VKRRI-GYLPEEPSLYENLTVRENLKLS 97
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 8e-13
Identities = 60/207 (28%), Positives = 100/207 (48%), Gaps = 16/207 (7%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L G++ + G +TA++G +GAGK+TL L G + + G I + Y +K R
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 942 IS-GYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
S G Q+ + F ++Y+ + F A PE + R +D ++ + L+
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR---VDNALKRTGIEHLKDK- 137
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGR 1058
LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ + + G
Sbjct: 138 ----PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGL 193
Query: 1059 TVVCTIHQPSIDIFEAF-DELFLMKRG 1084
T++ H IDI + D +F+MK G
Sbjct: 194 TIIIATH--DIDIVPLYCDNVFVMKEG 218
|
Length = 283 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 9e-13
Identities = 63/252 (25%), Positives = 101/252 (40%), Gaps = 52/252 (20%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM- 219
K+ + + VS +KPG +T LLGP +GKTT L LAG L+P +G T +G D+
Sbjct: 14 VKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVV 70
Query: 220 -DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ +R ++S +T RE L + A G+
Sbjct: 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGL---------------------- 108
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
+G E + LG++ D VG G S G +++V +
Sbjct: 109 ------------KGDELTARLEELADRLGMEELLDRRVG-----GFSTGMRQKVAIARAL 151
Query: 339 VGPALALFMDEISTGLD---SSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395
V L +DE +TGLD + + + LR G ++ E L D +
Sbjct: 152 VHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-----LGKCILFSTHIMQEVERLCDRV 206
Query: 396 ILLSDGQIVYQG 407
++L G++VY+G
Sbjct: 207 VVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 9e-13
Identities = 47/195 (24%), Positives = 73/195 (37%), Gaps = 52/195 (26%)
Query: 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
+T L+D+S ++ G L+GP GK+TLL +AG PT SG V +G
Sbjct: 11 GGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEP 67
Query: 219 MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ P Y+ Q D + +TV + +A QGV RE+A
Sbjct: 68 VTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKA-------EARERAEE---- 114
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV----TT 334
L+++GL + +SGG ++RV
Sbjct: 115 -----------------------LLELVGLSGFE-----NAYPHQLSGGMRQRVALARA- 145
Query: 335 GEMMVGPALALFMDE 349
+ V P + L +DE
Sbjct: 146 --LAVDPDV-LLLDE 157
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 9e-13
Identities = 66/278 (23%), Positives = 102/278 (36%), Gaps = 94/278 (33%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T+L DVS ++PG + +LGP +GK+TLL AL+G+L P SG V NG + ++ P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPA 72
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
A A + QH +L+F + V
Sbjct: 73 ELARRRAVLPQH----------SSLSFPFTVEEV-------------------------- 96
Query: 283 VYMKAI--ATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
V M E + + L + L + +SGG+++RV
Sbjct: 97 VAMGRAPHGLSRAEDDALVAAALAQVDL-----AHLAGRDYPQLSGGEQQRV-------- 143
Query: 341 PALA---------------LFMDEISTGLDSS---TTFQIV-NCLRQNIHINSGTAVISL 381
LA L +DE ++ LD + ++ + G AVI +
Sbjct: 144 -QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHER-----GLAVIVV 197
Query: 382 LQPAPETYDL------FDDIILLSDGQIVYQGPRELVL 413
L +DL D I+LL G++V G VL
Sbjct: 198 L------HDLNLAARYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-12
Identities = 67/251 (26%), Positives = 102/251 (40%), Gaps = 45/251 (17%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ- 225
+L+D+S I PG ++G SGK+TLL L G P G + +G D+++
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLAS 544
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
R Y+ Q D + ++RE +A E + E A+ AG
Sbjct: 545 LRRQVGYVLQ-DPFLFSGSIRENIALGN----PEATDEEIIEAAQL---AGAHEF----- 591
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
+ L + DT VG E +SGGQ++R+ ++
Sbjct: 592 ---------------------IENLPMGYDTPVG-EGGANLSGGQRQRLALARALLSKPK 629
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L +DE ++ LD T I+ L Q I G VI ++ T D II+L G+I
Sbjct: 630 ILLLDEATSALDPETEAIILQNLLQ---ILQGRTVI-IIAHRLSTIRSADRIIVLDQGKI 685
Query: 404 VYQGPRELVLE 414
V QG E +L
Sbjct: 686 VEQGSHEELLA 696
|
Length = 709 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 1e-12
Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 20/218 (9%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFA-RI 942
L+ V+ G L AL+G SG+GK+TL+ ++AG + +G I ++G + R
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHARDRK 73
Query: 943 SGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL 1002
G+ Q+ +T+ +++ F +R + K ++E++ELV+L L
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDR---Y 127
Query: 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR-TVV 1061
P + LS QR+R+ +A L P ++ +DEP LDA+ + +R D T V
Sbjct: 128 P--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTV 185
Query: 1062 CTIHQPSIDIFEAFDELFLMKRG-------GQEIYVGP 1092
H + E D + +M G E+Y P
Sbjct: 186 FVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVYDHP 222
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 1e-12
Identities = 66/278 (23%), Positives = 102/278 (36%), Gaps = 81/278 (29%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
IL V + G + +LG SGK+TLL + G L P G + +G D+ + +
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEE 78
Query: 226 RTAA------YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+ Q +TV E +AF L E + P+
Sbjct: 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAF------------PLREHTK-------LPES 119
Query: 280 DID--VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
I V MK L+++GL D +SGG +KRV
Sbjct: 120 LIRELVLMK----------------LELVGL----RGAAADLYPSELSGGMRKRV----- 154
Query: 338 MVGPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINS--GTAVISLLQPAP 386
ALA LF+DE ++GLD + I +R +N G VI +
Sbjct: 155 ----ALARAIALDPELLFLDEPTSGLDPISAGVIDELIR---ELNDALGLTVIMVTHDLD 207
Query: 387 ETYDLFDDIILLSDGQIVYQGPRE--------LVLEFF 416
+ D + +L+DG+++ +G E V +FF
Sbjct: 208 SLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQFF 245
|
Length = 263 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 1e-12
Identities = 65/240 (27%), Positives = 102/240 (42%), Gaps = 26/240 (10%)
Query: 849 LPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 908
L S+ F+ V +S K +L +S + PG A++G SG+GK+
Sbjct: 322 LKDTIGSIEFENVSFSYP------------GKKPVLKDISFSIEPGEKVAIVGPSGSGKS 369
Query: 909 TLMDVLAG--RKTGGYIT-GNITISGYPKKQETFARISGYCEQNDIHSPF-VTIYESLLF 964
TL+ +L T G I I I RI G Q+ + F TI E++
Sbjct: 370 TLIKLLLRLYDPTSGEILIDGIDIRDISLD-SLRKRI-GIVSQDPLL--FSGTIRENIAL 425
Query: 965 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA 1024
E++ + E + L ++VG GV LS QR+RL IA L+
Sbjct: 426 GRPDATDEEIEEALKLANAHEFIA--NLPDGYDTIVGERGV-NLSGGQRQRLAIARALLR 482
Query: 1025 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
NP I+ +DE TS LD A++ ++ + GRT + H+ S + D + ++ G
Sbjct: 483 NPPILILDEATSALDTETEALIQDALKKLLK-GRTTLIIAHRLS--TIKNADRIIVLDNG 539
|
Length = 567 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 1e-12
Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 34/205 (16%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNITISGYP--- 933
D V+L+ +S +PG + ++G SG+GK+TL ++ Y+ G + + G+
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF----YVPENGRVLVDGHDLAL 68
Query: 934 KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVME----- 988
R G Q E++LF+ +R + M ++ V+E
Sbjct: 69 ADPAWLRRQVGVVLQ-----------ENVLFNRSIR--DNIALADPGMSMERVIEAAKLA 115
Query: 989 -----LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1043
+ EL ++VG G GLS QR+R+ IA L+ NP I+ DE TS LD +
Sbjct: 116 GAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESE 174
Query: 1044 AIVMRTVRNTVDTGRTVVCTIHQPS 1068
+MR + + GRTV+ H+ S
Sbjct: 175 HAIMRNMHDICA-GRTVIIIAHRLS 198
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 66.6 bits (164), Expect = 2e-12
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ- 225
+LKDVS IKPG ++GP SGK+TLL L DPT SG + +G D+ + +
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLES 73
Query: 226 --RTAAYISQHDNHIGEMTVRE 245
+ AY+ Q D + T+RE
Sbjct: 74 LRKNIAYVPQ-DPFLFSGTIRE 94
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 55/235 (23%), Positives = 91/235 (38%), Gaps = 46/235 (19%)
Query: 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPT---LKVSGTVTYNGH-DMDEFVPQRTAAYIS 232
+T + G +GK+TLL +AG P + ++GTV ++ ++ QR +
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEG 292
Q + VRE LAF + + + EL
Sbjct: 82 QQYALFPHLNVRENLAFGLKRKRNREDRISVDEL-------------------------- 115
Query: 293 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIST 352
L +LGLD + + +SGG+K+RV + L +DE +
Sbjct: 116 ----------LDLLGLD-----HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFS 160
Query: 353 GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
LD + Q++ L+Q I N VI + E L D I+++ DG++ Y G
Sbjct: 161 ALDRALRLQLLPELKQ-IKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 72.4 bits (177), Expect = 2e-12
Identities = 61/200 (30%), Positives = 98/200 (49%), Gaps = 23/200 (11%)
Query: 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS------GY 945
RPG L+GV+GAGKTT +L G T +G+ T++G + IS GY
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAG----KSILTNISDVHQNMGY 2016
Query: 946 CEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 1005
C Q D +T E L A LR P +E + + ++ + L+ L G
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLRGVP---AEEIEKVANWSIQSLGLSLYADRLAGT--- 2070
Query: 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1065
S +++L+ A+ L+ P ++ +DEPT+G+D +A ++ T+ + + GR VV T H
Sbjct: 2071 --YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
Query: 1066 QPSIDIFEAF-DELFLMKRG 1084
S++ EA L +M +G
Sbjct: 2129 --SMEECEALCTRLAIMVKG 2146
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 2e-12
Identities = 71/277 (25%), Positives = 119/277 (42%), Gaps = 66/277 (23%)
Query: 148 FEDI-LNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL 206
F+++ Y PS+ ILK +S I PG+ L+G GK+T++ L DPT
Sbjct: 3 FKNVSFRY----PSRPDV-PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT- 56
Query: 207 KVSGTVTYNGHDMDEFVPQ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEML 263
SG + +G D+ + + +SQ + + + T+ E + +
Sbjct: 57 --SGEILLDGVDIRDLNLRWLRSQIGLVSQ-EPVLFDGTIAENIRYG------------- 100
Query: 264 TELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323
KPD + +A +AN I D+ ++ L DT+VG+ RG
Sbjct: 101 ------------KPDATDEEVEEAAK----KAN-IHDF---IMSLPDGYDTLVGE---RG 137
Query: 324 --ISGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI- 379
+SGGQK+R+ ++ P + L +DE ++ LD+ + + L T VI
Sbjct: 138 SQLSGGQKQRIAIARALLRNPKI-LLLDEATSALDAESEKLVQEAL-DRAMKGRTTIVIA 195
Query: 380 ---SLLQPAPETYDLFDDIILLSDGQIVYQG-PRELV 412
S ++ A D I +L +GQ+V QG EL+
Sbjct: 196 HRLSTIRNA-------DLIAVLQNGQVVEQGTHDELM 225
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-12
Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 36/174 (20%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
LN +S PG L ++G +GAGKTT+MDV+ G R G + G ++G P+ Q A
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQ--IA 75
Query: 941 RISGYCEQNDIHSPFVTIYESL---------------LFSAWL-RLSPEVDSETRKMFID 984
R +G + P T++E+L +F++ RLS E I+
Sbjct: 76 R-AGIGRK--FQKP--TVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDR-----IE 125
Query: 985 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038
EV+E + L L GL LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 126 EVLETIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 2e-12
Identities = 62/268 (23%), Positives = 103/268 (38%), Gaps = 115/268 (42%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
LKD++ + G L ++GP SGK++LL AL G+L+ K+SG+V+ G
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG---------- 66
Query: 227 TAAYISQ---HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ AY+SQ N T+RE + F G ++
Sbjct: 67 SIAYVSQEPWIQN----GTIRENILF-------GKPFDE--------------------- 94
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCA------------DTMVGDEMIRGI--SGGQK 329
+ Y KV + CA T +G+ +GI SGGQK
Sbjct: 95 ----------------ERYEKV--IKACALEPDLEILPDGDLTEIGE---KGINLSGGQK 133
Query: 330 KRVTTGEMMVGPALA---------LFMDEISTGLDSSTTFQIV-NCLRQNIHINSGTAV- 378
+R+ +LA +D+ + +D+ I NC+ + +N+ T +
Sbjct: 134 QRI---------SLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLL-LNNKTRIL 183
Query: 379 ----ISLLQPAPETYDLFDDIILLSDGQ 402
+ LL A D I++L +G+
Sbjct: 184 VTHQLQLLPHA-------DQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-12
Identities = 58/222 (26%), Positives = 103/222 (46%), Gaps = 29/222 (13%)
Query: 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--- 936
K L G+S + + G A++G SG+GK+TL ++ G +G++ + G KQ
Sbjct: 330 KKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADLKQWDR 387
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
ETF + GY Q D+ T+ E++ R D E +++E +L +
Sbjct: 388 ETFGKHIGYLPQ-DVELFPGTVAENIA-----RFGENADPE-------KIIEAAKLAGVH 434
Query: 997 QSLVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
+ ++ LP G + LS QR+R+ +A L +P ++ +DEP S LD +
Sbjct: 435 ELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALA 494
Query: 1048 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089
++ G TVV H+PS + D++ +++ G +
Sbjct: 495 NAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARF 534
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 72/272 (26%), Positives = 112/272 (41%), Gaps = 68/272 (25%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF- 222
+LKDVS I G+ ++GP SGK+T+L L D + SG++ +G D+ E
Sbjct: 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS---SGSILIDGQDIREVT 69
Query: 223 ----------VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272
VPQ T + +D T+ + + R A
Sbjct: 70 LDSLRRAIGVVPQDTVLF---ND------TIGYNIRYG------------------RPDA 102
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG--ISGGQKK 330
D +V A A + I D K++ DT+VG+ RG +SGG+K+
Sbjct: 103 T------DEEVIEAAKAAQ------IHD---KIMRFPDGYDTIVGE---RGLKLSGGEKQ 144
Query: 331 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390
RV ++ L +DE ++ LD+ T +I LR G I + +
Sbjct: 145 RVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS---KGRTTIVIAHRLSTIVN 201
Query: 391 LFDDIILLSDGQIVYQG-PRELVLE--FFASM 419
D II+L DG+IV +G EL+ + +A M
Sbjct: 202 A-DKIIVLKDGRIVERGTHEELLAKGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 2e-12
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 14/159 (8%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 942
L VS G L ++G SG GKTTL++++AG T G+I ++G + R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAER- 76
Query: 943 SGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVG 1001
G QN+ P++ + +++ F LR ++ R+ +++ LV L + +
Sbjct: 77 -GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIWQ 132
Query: 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040
L G R+R+ IA L P ++ +DEP LDA
Sbjct: 133 LSG------GMRQRVGIARALAVEPQLLLLDEPFGALDA 165
|
Length = 259 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 3e-12
Identities = 59/259 (22%), Positives = 96/259 (37%), Gaps = 67/259 (25%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV 223
+ L+ VS ++ G + LLG +GKTTLL + G + P SG + ++G D+
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLP 71
Query: 224 PQRTA----AYISQHDNHIGEMTVRETL--AFSARCQGVGTR------YEMLTELA-RRE 270
P A AY+ + +TV E L AR YE+ L RR
Sbjct: 72 PHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRN 131
Query: 271 KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKK 330
+ AG T+ SGG+++
Sbjct: 132 QRAG---------------------------------------TL---------SGGEQQ 143
Query: 331 RVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389
+ +M P L L +DE S GL +I +++ + G ++ + Q A
Sbjct: 144 MLAIARALMSRPKL-LLLDEPSEGLAPKIVEEIFEAIKE-LRKEGGMTILLVEQNARFAL 201
Query: 390 DLFDDIILLSDGQIVYQGP 408
++ D +L +G+IV G
Sbjct: 202 EIADRGYVLENGRIVLSGT 220
|
Length = 237 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 3e-12
Identities = 59/215 (27%), Positives = 97/215 (45%), Gaps = 28/215 (13%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET---F 939
+LN +S + G +TAL+G +G GK+TL+ A T +G + + P +
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPISMLSSRQL 74
Query: 940 ARISGYCEQNDIHSPFVTIYE------SLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 993
AR Q+ + +T+ E S S W RLS E +++ ME +N
Sbjct: 75 ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAE-----DNARVNQAMEQTRIN 129
Query: 994 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053
L + + LS QR+R +A+ L + ++ +DEPT+ LD +MR +R
Sbjct: 130 HLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL 184
Query: 1054 VDTGRTVVCTIHQPSIDIFEA---FDELFLMKRGG 1085
G+TVV +H D+ +A D L ++ G
Sbjct: 185 NTQGKTVVTVLH----DLNQASRYCDHLVVLANGH 215
|
Length = 255 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 4e-12
Identities = 63/245 (25%), Positives = 102/245 (41%), Gaps = 51/245 (20%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL----DPTLKVSGTVTYNGHDMDEF 222
+L D++ I PG + +L GP SGKTT LL L G L + +LKV G Y + +
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTT-LLTLIGGLRSVQEGSLKVLGQELYGASEKELV 78
Query: 223 VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+R YI Q N +G +T R Q V E+ L+ +E
Sbjct: 79 QLRRNIGYIFQAHNLLGFLTAR---------QNVQMALELQPNLSYQEARE--------- 120
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM---IRGISGGQKKRVTTGEMMV 339
+A A L+ +GL GD + +SGGQK+RV +V
Sbjct: 121 ---RARA------------MLEAVGL--------GDHLDYYPHNLSGGQKQRVAIARALV 157
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399
+ DE + LDS + +V +++ G ++ ++ D+ D I+ +
Sbjct: 158 HRPKLVLADEPTAALDSKSGRDVVELMQKLAR-EQGCTIL-IVTHDNRILDVADRIVHME 215
Query: 400 DGQIV 404
DG+++
Sbjct: 216 DGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 4e-12
Identities = 63/240 (26%), Positives = 101/240 (42%), Gaps = 44/240 (18%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
T L D++ I G +LLGP GKTT L +AG +PT SG + G D+ + P
Sbjct: 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPK 70
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
R A + Q+ MTV + +AF + + V P +ID
Sbjct: 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKV--------------------PKDEIDER 110
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
++ +A ++L ++ + D + +SGGQ++RV G +V
Sbjct: 111 VREVA--------------ELLQIE-----HLLDRKPKQLSGGQRQRVALGRAIVREPKV 151
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
MDE + LD+ Q+ L+ + GT I + E + D I +++DGQI
Sbjct: 152 FLMDEPLSNLDAKLRVQMRAELK-RLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 5e-12
Identities = 59/216 (27%), Positives = 90/216 (41%), Gaps = 44/216 (20%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG---HDMDEFV 223
+L VS + PG +LGP SGK+TLL LAG LDP G VT +G +D+
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPL---QGEVTLDGVPVSSLDQDE 406
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+R + +Q D H+ + TVRE L + T E+ L R G+
Sbjct: 407 VRRRVSVCAQ-DAHLFDTTVRENLRLAR---PDATDEELWAALER----VGLADWLR--- 455
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
L DT++G E +SGG+++R+ ++ A
Sbjct: 456 -----------------------ALPDGLDTVLG-EGGARLSGGERQRLALARALLADAP 491
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
L +DE + LD+ T +++ L SG V+
Sbjct: 492 ILLLDEPTEHLDAETADELLEDLLA---ALSGRTVV 524
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 5e-12
Identities = 61/190 (32%), Positives = 94/190 (49%), Gaps = 20/190 (10%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
+N VS G + L+G +GAGKTT ++ G R G I + I+ P + A
Sbjct: 20 VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR--A 77
Query: 941 RIS-GYCEQNDIHSPF--VTIYESLLFSAWLRLSPEVDSET--RKMFIDEVMELVELNPL 995
R+ GY Q S F +T+ ++++ A L + E D + RK +D ++E + L
Sbjct: 78 RLGIGYLPQE--ASIFRKLTVEDNIM--AVLEIR-EKDLKKAERKEELDALLEEFHITHL 132
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055
R S S LS +R+R+ IA L ANP I +DEP +G+D A + R +++ D
Sbjct: 133 RDS----KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD 187
Query: 1056 TGRTVVCTIH 1065
G V+ T H
Sbjct: 188 RGIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 6e-12
Identities = 58/208 (27%), Positives = 96/208 (46%), Gaps = 17/208 (8%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA 940
+L G++ F +T L+G +G GK+TL L+G R G + Y K+
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 941 R--ISGYCEQNDIHSPFVTIYESLLFSAWLR-LSPEVDSETRKMFIDEVMELVELNPLRQ 997
R ++ + + + I + FS LR L TR+ +DE + LV+ R
Sbjct: 76 RQQVATVFQDPEQQIFYTDIDSDIAFS--LRNLGVPEAEITRR--VDEALTLVDAQHFRH 131
Query: 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1057
+ LS Q+KR+ IA LV + +DEPT+GLD ++ +R V G
Sbjct: 132 Q-----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQG 186
Query: 1058 RTVVCTIHQPSID-IFEAFDELFLMKRG 1084
V+ + H ID I+E D ++++++G
Sbjct: 187 NHVIISSH--DIDLIYEISDAVYVLRQG 212
|
Length = 271 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 7e-12
Identities = 58/251 (23%), Positives = 105/251 (41%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
IL D+S + G++T L+GP GK+TLL A L P SGTV + +
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSR 72
Query: 226 RTAAYIS---QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ A ++ QH +TVRE +A+ R L+ R
Sbjct: 73 QLARRLALLPQHHLTPEGITVRELVAYG--------RSPWLSLWGRL------------- 111
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
E N + ++ ++ AD + D +SGGQ++R ++
Sbjct: 112 ---------SAEDNARVNQAMEQTRINHLADRRLTD-----LSGGQRQRAFLAMVLAQDT 157
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+ +DE +T LD + +++ +R+ G V+++L + D +++L++G
Sbjct: 158 PVVLLDEPTTYLDINHQVELMRLMRE--LNTQGKTVVTVLHDLNQASRYCDHLVVLANGH 215
Query: 403 IVYQGPRELVL 413
++ QG E V+
Sbjct: 216 VMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 7e-12
Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 19/158 (12%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
+N +S + L+G +GAGK+TL+ ++ G R T +G I G+P ++ +
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHPWTRKDLHK 71
Query: 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 1001
I E ++ +T E+L L P DS IDEV+ +V+L G
Sbjct: 72 IGSLIESPPLYEN-LTARENLKVHTTLLGLP--DSR-----IDEVLNIVDLTN-----TG 118
Query: 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
S ++RL IA+ L+ +P ++ +DEPT+GLD
Sbjct: 119 KKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 8e-12
Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 18/179 (10%)
Query: 894 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQND-IH 952
G + AL+GV+G+GK+TL L G +G I+I G P +Q + Y Q++ +
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVRLA--SGKISILGQPTRQALQKNLVAYVPQSEEVD 90
Query: 953 SPFVTIYESLLFSA------WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006
F + E ++ WLR + + D + + + V++ R +G
Sbjct: 91 WSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQI----VTAALARVDMVEFRHRQIG----- 141
Query: 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1065
LS Q+KR+ +A + +I +DEP +G+D + A ++ +R D G+T++ + H
Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTH 200
|
Length = 272 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 9e-12
Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 18/188 (9%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT--GNITISGYPKKQETF 939
L G+S G + +G +GAGKTT + +L+G + T G + G + + ++++
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVP---WKRRKKFL 93
Query: 940 ARISGYCEQNDIHSPFVTIYESLLFSAWL-RLSPEVDSETRKMFIDEVMELVELNPLRQS 998
RI Q + + +S A + L P + DE+ EL++L L +
Sbjct: 94 RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRL----DELSELLDLEELLDT 149
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 1057
V LS QR R IA L+ P I+F+DEPT GLD A + ++ + G
Sbjct: 150 -----PVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERG 204
Query: 1058 RTVVCTIH 1065
TV+ T H
Sbjct: 205 TTVLLTSH 212
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 9e-12
Identities = 69/211 (32%), Positives = 99/211 (46%), Gaps = 46/211 (21%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTL------MDVLAGRKTGGYITGNITISG---YPK 934
LN VS F P +TAL+G SG+GK+TL M+ L T ITG+I +G Y
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT---ITGSIVYNGHNIYSP 77
Query: 935 KQETF---ARISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV 990
+ +T I +Q + PF ++IYE++++ LRL D K +DE +E
Sbjct: 78 RTDTVDLRKEIGMVFQQPN---PFPMSIYENVVYG--LRLKGIKD----KQVLDEAVE-- 126
Query: 991 ELNPLRQSLVGLP-----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
+SL G GLS Q++R+ IA L +P II +DEPTS LD
Sbjct: 127 ------KSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALD 180
Query: 1040 ARAAAIVMRTVRNTVD--TGRTVVCTIHQPS 1068
+A + T+ D T V ++ Q S
Sbjct: 181 PISAGKIEETLLGLKDDYTMLLVTRSMQQAS 211
|
Length = 252 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 1e-11
Identities = 56/197 (28%), Positives = 83/197 (42%), Gaps = 34/197 (17%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 936
L G+S PG AL+G SG GK+T++ D +G I + G +
Sbjct: 19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE---------ILLDGVDIRD 69
Query: 937 ---ETFARISGYCEQNDIHSP---FVTIYESLLFSAWLRLSPEVDSETRKMFIDE-VMEL 989
G Q P TI E++ + EV+ +K I + +M L
Sbjct: 70 LNLRWLRSQIGLVSQE----PVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSL 125
Query: 990 VELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048
P +LVG S LS Q++R+ IA L+ NP I+ +DE TS LDA + +V
Sbjct: 126 ----PDGYDTLVG-ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 1049 TVRNTVDTGRTVVCTIH 1065
+ + GRT + H
Sbjct: 181 AL-DRAMKGRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 36/217 (16%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKK 935
+L VS G A++G SG+GK+T++ DV +G I I G +
Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS---------ILIDGQDIR 66
Query: 936 ---QETFARISGYCEQ-----NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 987
++ R G Q ND TI ++ + EV + I +
Sbjct: 67 EVTLDSLRRAIGVVPQDTVLFND------TIGYNIRYGRPDATDEEVIEAAKAAQIHD-- 118
Query: 988 ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
+++ ++VG G+ LS +++R+ IA ++ NP I+ +DE TS LD +
Sbjct: 119 KIMRFPDGYDTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 1048 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+R V GRT + H+ S I A D++ ++K G
Sbjct: 178 AALR-DVSKGRTTIVIAHRLS-TIVNA-DKIIVLKDG 211
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 51/164 (31%), Positives = 78/164 (47%), Gaps = 11/164 (6%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-E 937
V L+GVS + G L+G SG GKTTL+ ++AG +T +G I + G
Sbjct: 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT--SGEILLDGKDITNLP 68
Query: 938 TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 997
R QN P +T++E++ F LRL ++ K + E ++LV+L
Sbjct: 69 PHKRPVNTVFQNYALFPHLTVFENIAFG--LRLK-KLPKAEIKERVAEALDLVQLEGYAN 125
Query: 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
S LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 126 RK-----PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 1e-11
Identities = 66/277 (23%), Positives = 99/277 (35%), Gaps = 68/277 (24%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
L VS IK G LLGP GKTTLL +AG PT SG + +G D+ P
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPH 70
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
+R + Q+ +TV E +AF R + + E+ R A
Sbjct: 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPK-----AEIKERVAEA----------- 114
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
+ + EG + +SGGQ++RV +V
Sbjct: 115 LDLVQLEGYA-----------------------NRKPSQLSGGQQQRVAIARALVNEPKV 151
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQ-------NIHINSGTAVISLLQPAPETYDLFDDIIL 397
L +DE LD LR+ + G + + E + D I +
Sbjct: 152 LLLDEPLGALDLK--------LRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAV 203
Query: 398 LSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFL 433
++ G+I G P E+ + P + VADF+
Sbjct: 204 MNKGKIQQIGTPEEI---------YEEPANRFVADFI 231
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 43/193 (22%), Positives = 84/193 (43%), Gaps = 21/193 (10%)
Query: 898 ALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP 954
++G +G+GK+ L++ +AG +G + I+ P ++ Y QN P
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI----SYVPQNYALFP 84
Query: 955 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM---ELVELNPLRQSLVGLPGVSGLSTE 1011
+T+Y+++ + R + + E + + I E++ L+ P LS
Sbjct: 85 HMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET-----------LSGG 133
Query: 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 1071
+++R+ IA LV NP I+ +DEP S LD R + ++ V + +
Sbjct: 134 EQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEA 193
Query: 1072 FEAFDELFLMKRG 1084
+ D++ +M G
Sbjct: 194 WALADKVAIMLNG 206
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-11
Identities = 49/198 (24%), Positives = 74/198 (37%), Gaps = 49/198 (24%)
Query: 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
S K+ IL D+S + G + L G +GKTTL LAG + + SG++ NG +
Sbjct: 8 SYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPI 64
Query: 220 DEFVPQRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+++ Y+ Q D + +VRE EL K
Sbjct: 65 KAKERRKSIGYVMQDVDYQLFTDSVRE-------------------ELLLGLKELD---- 101
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG-EM 337
N + LK L L + +SGGQK+R+ +
Sbjct: 102 ---------------AGNEQAETVLKDLDLYALK-----ERHPLSLSGGQKQRLAIAAAL 141
Query: 338 MVGPALALFMDEISTGLD 355
+ G L L DE ++GLD
Sbjct: 142 LSGKDL-LIFDEPTSGLD 158
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 2e-11
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T L +VS +K G + L+GP SGK+TLL A+AG L PT SG + +G D+ + +
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLE 69
Query: 226 ---RTAAYISQ 233
R Y+ Q
Sbjct: 70 ELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 2e-11
Identities = 56/246 (22%), Positives = 97/246 (39%), Gaps = 53/246 (21%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T L D+S ++ G + LLGP +GKTT + + G + P SG V ++G +D +
Sbjct: 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLD-IAAR 69
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
Y+ + +M V + L + A+ +G+ ARR
Sbjct: 70 NRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEE------ARRR--------------- 108
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT-TGEMMVGPALA 344
D +L+ L L A ++ + +S G +++V ++ P L
Sbjct: 109 -------------IDEWLERLELSEYA-----NKRVEELSKGNQQKVQFIAAVIHDPEL- 149
Query: 345 LFMDEISTGLDSSTT---FQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
L +DE +GLD ++ L + G VI +L D ++LL+ G
Sbjct: 150 LILDEPFSGLDPVNVELLKDVIRELARA-----GKTVILSTHQMELVEELCDRVLLLNKG 204
Query: 402 QIVYQG 407
+ V G
Sbjct: 205 RAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-11
Identities = 53/208 (25%), Positives = 96/208 (46%), Gaps = 18/208 (8%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI-----SGYPKKQET 938
L ++ PG + L G SG+GKTTL+ ++ G ++ G++ + G +K+
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ--EGSLKVLGQELYGASEKELV 78
Query: 939 FARIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 997
R + GY Q F+T +++ + L L P + + + ++E V L
Sbjct: 79 QLRRNIGYIFQAHNLLGFLTARQNVQMA--LELQPNLSYQEARERARAMLEAVGLG---D 133
Query: 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 1056
L P LS Q++R+ IA LV P ++ DEPT+ LD+++ V+ ++ +
Sbjct: 134 HLDYYPH--NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQ 191
Query: 1057 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
G T++ H I + D + M+ G
Sbjct: 192 GCTILIVTHDNR--ILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-11
Identities = 68/256 (26%), Positives = 113/256 (44%), Gaps = 34/256 (13%)
Query: 838 EASRPKKKGMVLPFEPHS-LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVL 896
+ M LP P L+ + + + P + K +L G+S A + G
Sbjct: 317 AELPAAAERMPLP-APQGALSVERLTAAP--PGQKKP---------ILKGISFALQAGEA 364
Query: 897 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHS 953
++G SG+GK+TL +L G +G++ + G +Q E R GY Q D+
Sbjct: 365 LGIIGPSGSGKSTLARLLVGIWP--PTSGSVRLDGADLRQWDREQLGRHIGYLPQ-DVEL 421
Query: 954 PFVTIYESLLFSAWLRLSPEVDSETRKMF----IDEVMELVELNPL-RQSLVGLPGVSGL 1008
TI E++ R E D E K+ + V EL+ P + +G G + L
Sbjct: 422 FDGTIAENIA-----RFGEEADPE--KVIEAARLAGVHELILRLPQGYDTRIG-EGGATL 473
Query: 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1068
S QR+R+ +A L +P ++ +DEP S LD+ A + + G TVV H+PS
Sbjct: 474 SGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS 533
Query: 1069 IDIFEAFDELFLMKRG 1084
+ D++ +++ G
Sbjct: 534 --ALASVDKILVLQDG 547
|
Length = 580 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 2e-11
Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 22/208 (10%)
Query: 893 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGY-P-KKQETFARISGYCEQ 948
G + +G +GAGK+T + +L G T G + ++G P +++E + R G
Sbjct: 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR----VNGKDPFRRREEYLRSIGLVMG 104
Query: 949 NDIHSPFV-TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVS 1006
+ + +SL L+L E+ + +D + E+++L L+ V
Sbjct: 105 QKLQLWWDLPALDSLEV---LKLIYEIPDDEFAERLDFLTEILDLEGFLKWP------VR 155
Query: 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIH 1065
LS QR R +A L+ P ++F+DEPT GLD A A + ++ + TV+ T H
Sbjct: 156 KLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTH 215
Query: 1066 QPSIDIFEAFDELFLMKRGGQEIYVGPL 1093
DI D + L+ + GQ ++ G L
Sbjct: 216 IFD-DIATLCDRVLLIDQ-GQLVFDGTL 241
|
Length = 325 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 66.9 bits (163), Expect = 2e-11
Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 12/206 (5%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFA 940
+L+ +S G L AL+G SG GKTTL+ +AG +TG I I+
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHK 78
Query: 941 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 1000
R QN P + + +++ F + P+ D R + + ++LV L
Sbjct: 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAER---VADALKLVGLGDAAAH-- 133
Query: 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GR 1058
LP + LS ++R+ IA + P ++ +DEP S LDA A + + +
Sbjct: 134 -LP--AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL 190
Query: 1059 TVVCTIHQPSIDIFEAFDELFLMKRG 1084
T++C H D D+ +MK G
Sbjct: 191 TILCVTHDQD-DALTLADKAGIMKDG 215
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 2e-11
Identities = 62/222 (27%), Positives = 94/222 (42%), Gaps = 31/222 (13%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
++ V+ G L+G SG+GKTT + ++ T G I IS
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLD---PVEL 73
Query: 941 RIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPE---VDSETRKMFIDEVMELVELNPLR 996
R GY Q P +T+ E++ P+ D E K DE+++LV L+P
Sbjct: 74 RRKIGYVIQQIGLFPHLTVAENIA------TVPKLLGWDKERIKKRADELLDLVGLDP-S 126
Query: 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAA-IVMRTVRNT 1053
+ P LS Q++R+ +A L A+P I+ MDEP LD R ++ ++
Sbjct: 127 EYADRYP--HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE 184
Query: 1054 VDTGRTVVCTIHQPSIDIFEAF---DELFLMKRGGQEIYVGP 1092
G+T+V H DI EA D + +M G Y P
Sbjct: 185 --LGKTIVFVTH----DIDEALKLADRIAVMDAGEIVQYDTP 220
|
Length = 309 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 3e-11
Identities = 61/263 (23%), Positives = 102/263 (38%), Gaps = 67/263 (25%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAG--KLDPTLKVSGTVTYNGHD---MDE 221
LKD+S I G +T L+GP GK+TLL L L P G V +G D +D
Sbjct: 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74
Query: 222 FVPQ--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
V + R + Q N ++ + +A+ R G+ + EL R + A
Sbjct: 75 DVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLK----EELDERVEEA------ 123
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM-----IRGISGGQKKRVTT 334
L+ L DE+ G+SGGQ++R+
Sbjct: 124 -----------------------LRKAALW--------DEVKDRLHALGLSGGQQQRLCL 152
Query: 335 GE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETY 389
+ P + L +DE ++ LD +T +I + + + ++ ++ Q A
Sbjct: 153 ARALANEPEV-LLLDEPTSALDPISTAKIEELIAE---LKKEYTIVIVTHNMQQAA---- 204
Query: 390 DLFDDIILLSDGQIVYQGPRELV 412
+ D L +G++V GP E +
Sbjct: 205 RVADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 3e-11
Identities = 63/263 (23%), Positives = 111/263 (42%), Gaps = 66/263 (25%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+L DVS I G +T ++GP +GK+T LL++ +L K SG +T +G ++ +
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKST-LLSMMSRLLK--KDSGEITIDGLELTSTPSK 71
Query: 226 RTAAYIS--QHDNHIG-EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
A +S + +NHI +TVR+ + F R+
Sbjct: 72 ELAKKLSILKQENHINSRLTVRDLVGFG--------RFP--------------------- 102
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
Y + T+ E I + ++ L L + D + +SGGQ++R +
Sbjct: 103 -YSQGRLTK--EDRRIINEAIEYLHL-----EDLSDRYLDELSGGQRQRA-----FIAMV 149
Query: 343 LA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL------ 391
LA + +DE LD + QI+ LR+ T V+ L +D+
Sbjct: 150 LAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVL-------HDINFASCY 202
Query: 392 FDDIILLSDGQIVYQGPRELVLE 414
D I+ L +G++V QG + +++
Sbjct: 203 SDHIVALKNGKVVKQGSPDEIIQ 225
|
Length = 252 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 3e-11
Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 19/173 (10%)
Query: 874 QGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933
QG E +L +L GV + G AL+G SG+GK+TL+ +LAG G +G +++ G P
Sbjct: 18 QG--EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVGQP 73
Query: 934 -------KKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEV 986
+ + A+ G+ Q+ + P + E++ A LR E ++R +
Sbjct: 74 LHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR--GESSRQSR----NGA 127
Query: 987 MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
L+E L + L LP + LS +++R+ +A P ++F DEPT LD
Sbjct: 128 KALLEQLGLGKRLDHLP--AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 3e-11
Identities = 61/218 (27%), Positives = 94/218 (43%), Gaps = 37/218 (16%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GNITISGYPKKQET- 938
+N ++ G L+G SG+GKTT M + I G I I G +++
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTM-----KMINRLIEPTSGEIFIDGEDIREQDP 70
Query: 939 --FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
R GY Q P +T+ E++ + +L + E + DE++ LV L+P
Sbjct: 71 VELRRKIGYVIQQIGLFPHMTVEENI--ALVPKLL-KWPKEKIRERADELLALVGLDP-- 125
Query: 997 QSLVG-LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT------ 1049
P LS Q++R+ +A L A+P ++ MDEP LD + R
Sbjct: 126 AEFADRYP--HELSGGQQQRVGVARALAADPPLLLMDEPFGALDP-----ITRDQLQEEF 178
Query: 1050 VRNTVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1084
R + G+T+V H DI EAF D + +MK G
Sbjct: 179 KRLQQELGKTIVFVTH----DIDEAFRLADRIAIMKNG 212
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 3e-11
Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 24/164 (14%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---TGNITISGYPKKQETFA 940
L+ VS + G + +G +GAGK+T M ++ G Y+ +G++ + G Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG-----YLPPDSGSVQVCGEDVLQNPKE 72
Query: 941 --RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE---VDSETRKMFIDEVMELVELNPL 995
R GY + H+P +Y + +L+ + + K ++E++ELV L P
Sbjct: 73 VQRNIGYLPE---HNP---LYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPE 126
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
+ +G LS R+R+ +A L+ +P ++ +DEPT+GLD
Sbjct: 127 QHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 3e-11
Identities = 75/269 (27%), Positives = 117/269 (43%), Gaps = 53/269 (19%)
Query: 162 KRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT-----LKVSGTVTYNG 216
+RH IL+D+S I+PGR+T LLG +GK+TLL ALAG L +V+G VT NG
Sbjct: 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNG 70
Query: 217 HDMDEFVPQRTA---AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273
+ R A A + Q + AFSAR + RY ARR A
Sbjct: 71 EPLAAIDAPRLARLRAVLPQ--------AAQPAFAFSAREIVLLGRYPH----ARRAGAL 118
Query: 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT 333
+ D ++ +A+A G A +VG + + +SGG+ RV
Sbjct: 119 THR---DGEIAWQALALAG-------------------ATALVGRD-VTTLSGGELARVQ 155
Query: 334 TGEMM---------VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP 384
++ P L +DE + LD + ++++ +R+ + + V++++
Sbjct: 156 FARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRR-LARDWNLGVLAIVHD 214
Query: 385 APETYDLFDDIILLSDGQIVYQGPRELVL 413
D I +L+DG IV G VL
Sbjct: 215 PNLAARHADRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 4e-11
Identities = 61/247 (24%), Positives = 96/247 (38%), Gaps = 46/247 (18%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM--DEFVPQ 225
++ VS ++ G + LLGP +GKTT + L L PT SG T GHD+ + +
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVR 72
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
R + Q + E+T E L AR GV E R
Sbjct: 73 RRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA-----ERRER---------------- 111
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALAL 345
D L +GL D +++ SGG ++R+ +V L
Sbjct: 112 -------------IDELLDFVGL-----LEAADRLVKTYSGGMRRRLEIARSLVHRPEVL 153
Query: 346 FMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405
F+DE + GLD T + + + + G ++ E L D + ++ G+I+
Sbjct: 154 FLDEPTIGLDPQTRAHVWEYIEK-LKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA 212
Query: 406 QG-PREL 411
+G P EL
Sbjct: 213 EGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 4e-11
Identities = 62/254 (24%), Positives = 102/254 (40%), Gaps = 61/254 (24%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
L DVS ++PGR LLGP +GK+TL L G ++ GHD+ P+
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRR-APRAA 72
Query: 228 AAYIS---QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
A + Q +++VR+ L + A G L+R E A I
Sbjct: 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHG----------LSRAEARARIAEL------ 116
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV-GPAL 343
L LGL A+ D+ +R ++GG ++RV ++ PAL
Sbjct: 117 ------------------LARLGL---AER--ADDKVRELNGGHRRRVEIARALLHRPAL 153
Query: 344 ALFMDEISTGLDSSTTFQIVN-----CLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398
L +DE + GLD ++ I Q + + T ++ ++ D +++L
Sbjct: 154 -LLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEAD-------DRLVVL 205
Query: 399 SDGQIVYQG-PREL 411
G+++ G EL
Sbjct: 206 HRGRVLADGAAAEL 219
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 4e-11
Identities = 66/286 (23%), Positives = 107/286 (37%), Gaps = 87/286 (30%)
Query: 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKV-SGTVTYNGH 217
+ + ++DVS ++PG + ++G SGK+TL LAL G L ++ SG V +G
Sbjct: 16 ATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75
Query: 218 DMDEFVPQ-------RTAAYISQH-----------DNHIGEMTVRETLAFSARCQGVGTR 259
D+ + + A I Q + I E
Sbjct: 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRL--------------H 121
Query: 260 YEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319
+ AR+ L+ +GL D D
Sbjct: 122 GKGSRAEARKR----------------------------AVELLEQVGLP---DPERRDR 150
Query: 320 MIRGISGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINS 374
+SGG ++RV M+ ALA L DE +T LD +T QI++ L+ ++
Sbjct: 151 YPHQLSGGMRQRV-----MIAMALALKPKLLIADEPTTALDVTTQAQILDLLK-DLQREL 204
Query: 375 GTAVISLLQPAPETYDL------FDDIILLSDGQIVYQGPRELVLE 414
G AV+ + T+DL D ++++ G+IV GP E +L
Sbjct: 205 GMAVLFI------THDLGVVAELADRVVVMYKGEIVETGPTEEILS 244
|
Length = 539 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 4e-11
Identities = 74/294 (25%), Positives = 109/294 (37%), Gaps = 77/294 (26%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
+T L DVS I G + ++G +GK+TLL + PT SG+V +G D+
Sbjct: 15 GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLT 71
Query: 221 EF--VPQRTA----AYISQHDNHIGEMTVRETLAFSARCQGVG--TRYEMLTELARREKA 272
R I QH N + TV E +AF GV + + EL
Sbjct: 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLEL--- 128
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV 332
+ + KA Q +SGGQK+RV
Sbjct: 129 --------VGLSDKADRYPAQ------------------------------LSGGQKQRV 150
Query: 333 TTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINS--GTAVISLLQPA 385
+ ALA L DE ++ LD TT I+ L+ IN G ++ L+
Sbjct: 151 A-----IARALANNPKILLCDEATSALDPETTQSILELLKD---INRELGLTIV-LITHE 201
Query: 386 PE-TYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTS 438
E + D + +L G++V +G V E FA+ PK +F+ E
Sbjct: 202 MEVVKRICDRVAVLDQGRLVEEGT---VSEVFAN-----PKHAITQEFIGETLE 247
|
Length = 339 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 4e-11
Identities = 65/250 (26%), Positives = 107/250 (42%), Gaps = 57/250 (22%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ- 225
+L+D+S I G L+GP SGK+TL+ + D SG + +GHD+ ++
Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTLAS 73
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
R +SQ D + TV E +A+ G E+ +AA
Sbjct: 74 LRRQIGLVSQ-DVFLFNDTVAENIAY-------GRPGATREEVEEAARAAN--------- 116
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI--SGGQKKRVTTGEMMVGP 341
A E I + L DT++G+ RG+ SGGQ++R+ ++
Sbjct: 117 -----AHE-----FIME-------LPEGYDTVIGE---RGVKLSGGQRQRIAIARALLKD 156
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETYDLFDDIIL 397
L +DE ++ LD+ + + L + + N T VI S ++ A D I++
Sbjct: 157 PPILILDEATSALDTESERLVQAAL-ERLMKNRTTFVIAHRLSTIENA-------DRIVV 208
Query: 398 LSDGQIVYQG 407
L DG+IV +G
Sbjct: 209 LEDGKIVERG 218
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 4e-11
Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 12/190 (6%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKKQETFA 940
L+ VS R G L G SGAGKTTL+ +L G T G ++ +Q
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLL 77
Query: 941 RIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
R G Q+ P T+YE++ +R E + + R + + V L
Sbjct: 78 RRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRR---VGAALRQVGLEH---KA 131
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
P LS +++R+ IA +V +P ++ DEPT LD + ++ ++ G T
Sbjct: 132 DAFPEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTT 189
Query: 1060 VVCTIHQPSI 1069
V+ H S+
Sbjct: 190 VIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 4e-11
Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 18/133 (13%)
Query: 908 TTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS----GYCEQNDIHSPFVTIYESLL 963
+TL+ ++ G +G I + G + ++ G Q+ P +T+ E+L
Sbjct: 1 STLLKLITGLLQ--PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 964 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELV 1023
F + +E +E V L V LS Q++R+ IA L+
Sbjct: 59 FGL--------RDKEADARAEEALERVGLPDFLDRE----PVGTLSGGQKQRVAIARALL 106
Query: 1024 ANPSIIFMDEPTS 1036
P ++ +DEPT+
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 5e-11
Identities = 64/225 (28%), Positives = 106/225 (47%), Gaps = 26/225 (11%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-NITISGYPKKQETFARI 942
L+ V G + AL+G SG+GK+TL+ L+G TG G +I + G ++E R+
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE--GRL 77
Query: 943 SGYCEQNDIHSPFV----------TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL 992
+ ++ ++ ++ ++ E++L A L +P + + + L
Sbjct: 78 ARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGA-LGSTPFWRTCFS--WFTREQKQRAL 134
Query: 993 NPLRQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
L + VG+ VS LS Q++R+ IA L+ +I DEP + LD +A IVM
Sbjct: 135 QALTR--VGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVM 192
Query: 1048 RTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091
T+R+ G TVV T+HQ +D + E + R G Y G
Sbjct: 193 DTLRDINQNDGITVVVTLHQ--VDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 5e-11
Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 49/182 (26%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 933
L ++ +TAL+G SG GK+TL+ D++ G + + G + + G Y
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDGKNIYD 78
Query: 934 KKQETFA---RISGYCEQ--NDIHSPFV-TIYESLLFSAWLRLSPEVDSETRKMFIDEVM 987
K + R+ G Q N PF +IY+++ + LRL D E +DE++
Sbjct: 79 PKVDVVELRRRV-GMVFQKPN----PFPMSIYDNVAYG--LRLHGIKDKE-----LDEIV 126
Query: 988 ELVELNPLRQSLVGL----------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1037
E + L++ L + GLS Q++RL IA L P ++ MDEPTS
Sbjct: 127 E----SSLKK--AALWDEVKDRLHKSAL-GLSGGQQQRLCIARALAVKPEVLLMDEPTSA 179
Query: 1038 LD 1039
LD
Sbjct: 180 LD 181
|
Length = 253 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 8e-11
Identities = 72/270 (26%), Positives = 108/270 (40%), Gaps = 78/270 (28%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD----EFV 223
+ DVS ++ G L+G SGK+TL LAG L P+ SG++ ++G D+D E
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELR 363
Query: 224 PQR-TAAYISQH-----DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
R + Q + MTV + LA R G G+ E RR + A +
Sbjct: 364 RLRRRIQMVFQDPYSSLNPR---MTVGDILAEPLRIHGGGSGAE------RRARVAEL-- 412
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
L+++GL D +SGGQ++RV
Sbjct: 413 -------------------------LELVGL----PPEFLDRYPHELSGGQRQRVA---- 439
Query: 338 MVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV--IS-----LLQPA 385
+ ALA L +DE + LD S Q++N L+ + G IS + A
Sbjct: 440 -IARALALEPKLLILDEPVSALDVSVQAQVLNLLKD-LQEELGLTYLFISHDLAVVRYIA 497
Query: 386 PETYDLFDDIILLSDGQIVYQGPRELVLEF 415
D + ++ DG+IV +GP E V E
Sbjct: 498 -------DRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 8e-11
Identities = 68/267 (25%), Positives = 118/267 (44%), Gaps = 52/267 (19%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-R 226
LK+VS ++ G ++LGP SGK+ LL +AG + P SG + NG D+ P+ R
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKR 71
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
+Y+ Q+ MTV + +A+ G+ R E+ R+ +
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAY-----GLKKRKVDKKEIERK---------------VL 111
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346
IA ++LG+D + + +SGG+++RV +V L
Sbjct: 112 EIA--------------EMLGID-----HLLNRKPETLSGGEQQRVAIARALVVNPKILL 152
Query: 347 MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 406
+DE + LD T ++ L++ I G V+ + E + L D + ++ +G+++
Sbjct: 153 LDEPFSALDVRTKEKLREELKK-IRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQV 211
Query: 407 GPRELVLEFFASMGFRCPKRKGVADFL 433
G E V F+ PK + VA+FL
Sbjct: 212 GKPEEV--------FKKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 1e-10
Identities = 61/247 (24%), Positives = 100/247 (40%), Gaps = 60/247 (24%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
L ++ I G L+GP +GK+TLL + + PT SGT+ NG D+ + R
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDL-RGRA 72
Query: 228 AAYISQH------DNH-IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
Y+ + D + + V E +AF+ GV R E+ +R AA
Sbjct: 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPR-----EIRKRVPAA------- 120
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
L+++GL + +SGG+++RV +V
Sbjct: 121 ----------------------LELVGLSHKHRALPA-----ELSGGEQQRVAIARAIVN 153
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD----II 396
L DE + LD TT++I+N L++ I+ T V+ A +L D +I
Sbjct: 154 SPTILIADEPTGNLDPDTTWEIMNLLKK-INKAGTTVVV-----ATHAKELVDTTRHRVI 207
Query: 397 LLSDGQI 403
L G++
Sbjct: 208 ALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 1e-10
Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 30/218 (13%)
Query: 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ 936
+ L+ VS G + ++G SGAGK+TL+ ++ R T G + ++ + +
Sbjct: 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAE 77
Query: 937 -ETFARISGYCEQ--NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 993
+ G Q N + S T++E++ F L L+ V K V EL+EL
Sbjct: 78 LRQLRQKIGMIFQHFNLLSSR--TVFENVAFP--LELA-GVPKAEIK---QRVAELLEL- 128
Query: 994 PLRQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVM 1047
VGL + LS Q++R+ IA L NP I+ DE TS LD +I+
Sbjct: 129 ------VGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILE 182
Query: 1048 RTVRNTVDTGRTVVCTIHQPSIDIFEAF-DELFLMKRG 1084
+ G T+V H+ +++ + D + ++ +G
Sbjct: 183 LLKDINRELGLTIVLITHE--MEVVKRICDRVAVLDQG 218
|
Length = 339 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 1e-10
Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 19/164 (11%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNITISG-----YPKKQ 936
LL V+ G + LMG SG GK+TL+ + G G + TG + ++ P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
R G Q+ + P +++ ++LLF+ L + R+ + +E L+
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAF 128
Query: 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040
P + LS QR R+ + L+A P + +DEP S LD
Sbjct: 129 HQ---DP--ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 57/186 (30%), Positives = 86/186 (46%), Gaps = 12/186 (6%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
L VS G L G SGAGK+TL+ ++ G R T G I +S ++ F
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 941 RIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
R G Q+ P T+YE++ LR+ + E R+ V E+++L L+
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVALP--LRVIGKPPREIRR----RVSEVLDLVGLKHKA 131
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
LP S LS +++R+ IA +V P+++ DEPT LD + +MR G T
Sbjct: 132 RALP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189
Query: 1060 VVCTIH 1065
V+ H
Sbjct: 190 VLMATH 195
|
Length = 223 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 1e-10
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 27/167 (16%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
L +S + + G L+G SG GKTTL+ ++AG R+T G I G I+ P ++ +
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY- 78
Query: 941 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNPLRQSL 999
G Q+ P +T+ +++ + + R M EV E V EL L
Sbjct: 79 ---GIVFQSYALFPNLTVADNIAYGL----------KNRGMGRAEVAERVAEL----LDL 121
Query: 1000 VGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
VGLPG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 122 VGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 1e-10
Identities = 60/201 (29%), Positives = 91/201 (45%), Gaps = 26/201 (12%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYIT-GNITISGYP--KKQ 936
+L+G+ +PG + A++G SG+GKTTL+ L + G I G+ITI +Q
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 937 ETFARI----SGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL 992
+ R G+ QN P T+ E+++ + V E ++ EL+
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVI-----VKGEPKEEATARARELL-- 129
Query: 993 NPLRQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
+ VGL G LS Q++R+ IA L P +I DEPTS LD V+
Sbjct: 130 -----AKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL 184
Query: 1048 RTVRNTVDTGRTVVCTIHQPS 1068
T+R RT+V H+ S
Sbjct: 185 NTIRQLAQEKRTMVIVTHEMS 205
|
Length = 250 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 1e-10
Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 18/213 (8%)
Query: 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETF 939
+L GVS + G + A++G SG+GK+TL+ +L G +G + +G + +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKLSS 74
Query: 940 ARISGYCEQNDIHSPFVTIYESLL--FSAWLRLS-PEVDSETRKMFIDEV-MELVELNPL 995
+ + + F+ + LL F+A ++ P + + E E++E L
Sbjct: 75 NERA---KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGL 131
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV---MRTVRN 1052
+ P S LS +R+R+ IA LV PS++ DEPT LD A I+ M +
Sbjct: 132 EHRINHRP--SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNR 189
Query: 1053 TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085
++T VV H ++ + D + MK G
Sbjct: 190 ELNTSFLVV--THDL--ELAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 1e-10
Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 16/153 (10%)
Query: 893 PGV-LTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQ-ETFARISGYC 946
PG +TA+ G SG+GKTTL+ ++AG R G + G R GY
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80
Query: 947 EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006
Q P +++ +L + R++ + V+EL+ + L L G
Sbjct: 81 FQEARLFPHLSVRGNLRYGMK-----RARPSERRISFERVIELLGIGHLLGRLPG----- 130
Query: 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
LS +++R+ I L+++P ++ MDEP + LD
Sbjct: 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-10
Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 28/194 (14%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 943
L + G A++G SG+GK+TL+ +LAG G+IT++G I+
Sbjct: 354 LKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVE--------IA 403
Query: 944 GYCEQNDIHSPFVTIYESLLFSAWLR-----LSPEVDSETRKMFIDEVMELVELNPLRQS 998
EQ + V LFS LR +P+ E + ++ V L L +S
Sbjct: 404 SLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEE----LWAALQQVGLEKLLES 459
Query: 999 L-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
+G G LS +R+RL +A L+ + + +DEPT GLD V+ +
Sbjct: 460 APDGLNTWLGEGG-RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLF 518
Query: 1052 NTVDTGRTVVCTIH 1065
+ G+T++ H
Sbjct: 519 EHAE-GKTLLMVTH 531
|
Length = 573 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 2e-10
Identities = 48/147 (32%), Positives = 70/147 (47%), Gaps = 17/147 (11%)
Query: 899 LMGVSGAGKTTLMDVLAG--RKTGG--YITGNITISGYPKKQETFARISGYCEQNDIHSP 954
L+G SG GKTT + ++AG T G YI G PK R QN P
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD-----RDIAMVFQNYALYP 85
Query: 955 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014
+T+Y+++ F LR P+ + + R + EV EL+++ L LS QR+
Sbjct: 86 HMTVYDNIAFGLKLRKVPKDEIDER---VREVAELLQIEHLLDRKP-----KQLSGGQRQ 137
Query: 1015 RLTIAVELVANPSIIFMDEPTSGLDAR 1041
R+ + +V P + MDEP S LDA+
Sbjct: 138 RVALGRAIVREPKVFLMDEPLSNLDAK 164
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-10
Identities = 56/183 (30%), Positives = 82/183 (44%), Gaps = 30/183 (16%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK-- 935
D ++L+ VS PG A++G SG+GK+TL+ +L G +T +G++ G
Sbjct: 463 PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQDLAGL 520
Query: 936 -QETFARISGYCEQN-DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 993
+ R G QN + S +I+E++ A L+ DE E +
Sbjct: 521 DVQAVRRQLGVVLQNGRLMSG--SIFENIAGGA--PLTL-----------DEAWEAARMA 565
Query: 994 PLRQSLVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
L + + +P G LS QR+RL IA LV P I+ DE TS LD R A
Sbjct: 566 GLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA 625
Query: 1045 IVM 1047
IV
Sbjct: 626 IVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 27/209 (12%)
Query: 898 ALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS---GYCEQN---DI 951
A++G +GAGK+TL G +G++ I G P +E + G QN I
Sbjct: 34 AVIGPNGAGKSTLFRHFNGILKPT--SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI 91
Query: 952 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011
SP T+ + + F ++ +D ET + + ++ L LR + P LS
Sbjct: 92 FSP--TVEQDIAFGP---INLGLDEETVAHRVSSALHMLGLEELRDRV---P--HHLSGG 141
Query: 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSID 1070
++KR+ IA + P ++ +DEPT+GLD + ++ + + +T G TV+ + HQ +
Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL- 200
Query: 1071 IFEAFDELFLMKRGG-------QEIYVGP 1092
+ E D +++M +G +EI++ P
Sbjct: 201 VPEMADYIYVMDKGRIVAYGTVEEIFLQP 229
|
Length = 277 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-10
Identities = 50/182 (27%), Positives = 77/182 (42%), Gaps = 31/182 (17%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR 941
LL VS PG L+G +GAGK+TL+ +LAG +G +T R
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTRPKG-------LR 67
Query: 942 ISGYCEQNDIHSPFVTIYESLL--FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
+ GY Q P T+ + ++ F L E++ + + L EL L + L
Sbjct: 68 V-GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEEL 126
Query: 1000 ---------------VGLPG----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040
+G P VS LS R+R+ +A L+ P ++ +DEPT+ LD
Sbjct: 127 DGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDL 186
Query: 1041 RA 1042
+
Sbjct: 187 ES 188
|
Length = 530 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 2e-10
Identities = 65/248 (26%), Positives = 103/248 (41%), Gaps = 49/248 (19%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
LK V+ + PG + LLG +GK+TL+ L+G +PT GT+T N + ++ +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLA 77
Query: 228 A----AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID- 282
A I Q + I E+TV E L + R LT +K G+ ID
Sbjct: 78 AQLGIGIIYQELSVIDELTVLENL-YIGR---------HLT-----KKVCGV---NIIDW 119
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
M+ A L +GL V D V + +S K+ + + ++ A
Sbjct: 120 REMRVRAAM----------MLLRVGLKVDLDEKVAN-----LSISHKQMLEIAKTLMLDA 164
Query: 343 LALFMDEISTGLDSSTT---FQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399
+ MDE ++ L + F I+N LR GTA++ + E + D ++
Sbjct: 165 KVIIMDEPTSSLTNKEVDYLFLIMNQLR-----KEGTAIVYISHKLAEIRRICDRYTVMK 219
Query: 400 DGQIVYQG 407
DG V G
Sbjct: 220 DGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 63/208 (30%), Positives = 101/208 (48%), Gaps = 26/208 (12%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 943
L ++ G L ++G SG GKTTL++++AG Y G+IT+ G P + R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAER-- 72
Query: 944 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 1003
G QN+ P+ + +++ F L+L+ V+ R ++++ V L + +
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFG--LQLA-GVEKMQRLEIAHQMLKKVGLEGAEKRYIW-- 127
Query: 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTGRT 1059
LS QR+R+ IA L ANP ++ +DEP LDA R M+T+ + +TG+
Sbjct: 128 ---QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQ---MQTLLLKLWQETGKQ 181
Query: 1060 VVCTIHQPSIDIFEAF---DELFLMKRG 1084
V+ H DI EA EL L+ G
Sbjct: 182 VLLITH----DIEEAVFMATELVLLSPG 205
|
Length = 255 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-10
Identities = 63/220 (28%), Positives = 97/220 (44%), Gaps = 44/220 (20%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA 940
L+ S +PG AL+G SG+GK+T+ ++AG + G I G P+++
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGIPREEIPRE 549
Query: 941 RISG---YCEQNDIHSPFVTIYESLLFSAWLRLSPE---VDSETRKMFIDEVM------- 987
++ +Q DI T+ ++L + W P+ V + D +
Sbjct: 550 VLANSVAMVDQ-DIFLFEGTVRDNL--TLWDPTIPDADLVRACKDAAIHDVITSRPGGYD 606
Query: 988 -ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046
EL E G + LS QR+RL IA LV NPSI+ +DE TS LD I+
Sbjct: 607 AELAE------------GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKII 654
Query: 1047 MRTVRNTVDTGRTVVCTI--HQPSIDIFEAFDELFLMKRG 1084
+R R C I H+ S I + DE+ +++RG
Sbjct: 655 DDNLRR-----RGCTCIIVAHRLST-IRDC-DEIIVLERG 687
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 24/209 (11%)
Query: 872 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931
K G E +L +L GV + G A++G SG+GK+TL+ VLAG +G + + G
Sbjct: 14 KTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLG 71
Query: 932 YP---KKQETFARIS----GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFID 984
P ++ A + G+ Q+ P +T E++ LR DS
Sbjct: 72 QPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAG----- 126
Query: 985 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----A 1040
L+E L + L P LS +++R+ +A P ++F DEPT LD
Sbjct: 127 -AKALLEAVGLGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGD 183
Query: 1041 RAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1069
+ A ++ R + G T+V H P +
Sbjct: 184 KIADLLFALNR---ERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 66/223 (29%), Positives = 103/223 (46%), Gaps = 39/223 (17%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISG----Y 932
D L G++ G + AL+G +GAGK+TL G + T +G + I G Y
Sbjct: 13 DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT----SGEVLIKGEPIKY 68
Query: 933 PKKQETFARIS-GYCEQN---DIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVM 987
KK R + G QN + +P T+ E + F L L + + E R V
Sbjct: 69 DKKSLLEVRKTVGIVFQNPDDQLFAP--TVEEDVAFGP-LNLGLSKEEVEKR------VK 119
Query: 988 ELVELNPLRQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1042
E ++ VG+ G LS Q+KR+ IA L P II +DEPTSGLD
Sbjct: 120 EALKA-------VGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMG 172
Query: 1043 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF-DELFLMKRG 1084
A+ +M+ + + G T++ + H +D+ + D++++M G
Sbjct: 173 ASQIMKLLYDLNKEGITIIISTHD--VDLVPVYADKVYVMSDG 213
|
Length = 275 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 2e-10
Identities = 55/227 (24%), Positives = 93/227 (40%), Gaps = 41/227 (18%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISG---YPKKQ 936
++GVS + G + ++G SG+GK+ L + G K I G I G +
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 937 ETFARISG----YCEQNDIHS--PFVTI----YESLLFSAWLRLSPEVDSETRKMFIDEV 986
+ +I G Q+ + S P +TI E L ++K +
Sbjct: 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG--------LSKKEAKERA 131
Query: 987 MELVELNPLRQSLVGLPGVSG--------LSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038
+EL+E LVG+P LS R+R+ IA+ L NP ++ DEPT+ L
Sbjct: 132 IELLE-------LVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTAL 184
Query: 1039 DARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
D A ++ ++ + G ++ H + + E D + +M G
Sbjct: 185 DVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMYAG 230
|
Length = 316 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 2e-10
Identities = 66/268 (24%), Positives = 113/268 (42%), Gaps = 58/268 (21%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-- 225
L +S VI+PG L+G SGK+TL+ + +P SG + +GHD+ ++
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASL 404
Query: 226 -RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
R A +SQ D + T+ +A+ Q A E+A
Sbjct: 405 RRQVALVSQ-DVVLFNDTIANNIAYGRTEQAD---------RAEIERAL----------- 443
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
A D+ V L + DT +G+ + +SGGQ++R+ ++ A
Sbjct: 444 --------AAAY-AQDF---VDKLPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDAPI 490
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETYDLFDDIILLSD 400
L +DE ++ LD+ + + L + + T VI S ++ A D I+++ D
Sbjct: 491 LILDEATSALDNESERLVQAAL-ERLMQGRTTLVIAHRLSTIEKA-------DRIVVMDD 542
Query: 401 GQIVYQGPRELVLE---FFA---SMGFR 422
G+IV +G +L +A +M FR
Sbjct: 543 GRIVERGTHNELLARNGLYAQLHNMQFR 570
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.3 bits (150), Expect = 3e-10
Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 24/192 (12%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GNITISGYPKKQET 938
L GVS G + AL+G +GAGKTTL+ + G R G I +IT
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDIT------GLPP 72
Query: 939 FARIS---GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNP 994
R Y + P +T+ E+LL L D E ++ ++EV EL L
Sbjct: 73 HERARLGIAYVPEGRRIFPRLTVEENLL----LGAYARRDKEAQERDLEEVYELFPRLKE 128
Query: 995 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054
R G LS +++ L IA L++ P ++ +DEP+ GL + + ++
Sbjct: 129 RRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELR 183
Query: 1055 DTGRTVVCTIHQ 1066
G + + Q
Sbjct: 184 KEGGMTILLVEQ 195
|
Length = 237 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 3e-10
Identities = 57/270 (21%), Positives = 101/270 (37%), Gaps = 51/270 (18%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
T+L D+S I+ G L L+G GKTTLL A+AG + ++G + D+ P
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA-GLTGRIAIADRDLTHAPPH 77
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
+R A + Q+ + V + +AF R A++ A I
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFGLR--------------AQKMPKADI--------- 114
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
A + D LK++GL + +SGG ++R+ +
Sbjct: 115 ----------AERVAD-ALKLVGL-----GDAAAHLPAQLSGGMQQRIAIARAIAIEPDV 158
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE + LD++ + + ++ + + L D ++ DG++
Sbjct: 159 LLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLA 218
Query: 405 YQG-PRELVLEFFASMGFRCPKRKGVADFL 433
G P+ L + P A+FL
Sbjct: 219 AHGEPQAL---------YDAPADGFAAEFL 239
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 3e-10
Identities = 58/279 (20%), Positives = 100/279 (35%), Gaps = 53/279 (18%)
Query: 830 QSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSG 889
+ + P ++L + FDE E+ LN +S
Sbjct: 3 DYFMKKKLKVPNPLSDDIILRVKNLYCVFDE-----KQENELVA----------LNNISY 47
Query: 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG-YPKKQETFARISGYCEQ 948
F + ++G SG+GK+TL+ G Y G I + Y ++ +
Sbjct: 48 TFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY--GTIQVGDIYIGDKKNNHELITNPYS 105
Query: 949 NDIHS--------PFV-----------TIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL 989
I + V TI + ++F + +++ F M L
Sbjct: 106 KKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGL 165
Query: 990 ----VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
+E +P GLS Q++R+ IA L P I+ DEPT+GLD +
Sbjct: 166 DDSYLERSPF-----------GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHE 214
Query: 1046 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+M+ + + +TV H + E DE+ +M +G
Sbjct: 215 MMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDKG 252
|
Length = 320 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 3e-10
Identities = 59/223 (26%), Positives = 98/223 (43%), Gaps = 27/223 (12%)
Query: 871 MKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 930
M++ V E L +SG R G + L+G +GAGK+TL+ +AG +G +G+I +
Sbjct: 4 MQLNDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFA 58
Query: 931 GYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 987
G P + AR Y Q +P W L+ +TR +++V
Sbjct: 59 GQPLEAWSATELARHRAYLSQQ--QTP------PFAMPVWHYLTLHQPDKTRTELLNDVA 110
Query: 988 ELVEL-NPLRQSLVGLPGVSGLSTEQRKRLT---IAVELVANPS--IIFMDEPTSGLDAR 1041
+ L + L +S L G QR RL + + ANP+ ++ +DEP + LD
Sbjct: 111 GALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVA 166
Query: 1042 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+ + R + G +V + H + + A +L+KRG
Sbjct: 167 QQSALDRLLSALCQQGLAIVMSSHDLNHTLRHA-HRAWLLKRG 208
|
Length = 248 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 4e-10
Identities = 47/215 (21%), Positives = 92/215 (42%), Gaps = 44/215 (20%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA 940
L ++ G L A++G G+GK++L+ L G K G ++ +I+
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIA---------- 69
Query: 941 RISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LR 996
Y Q P++ TI E++LF D E ++V++ L P L
Sbjct: 70 ----YVSQ----EPWIQNGTIRENILFGK------PFDEE----RYEKVIKACALEPDLE 111
Query: 997 ------QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-AAAIVMRT 1049
+ +G G++ LS Q++R+++A + ++ I +D+P S +DA I
Sbjct: 112 ILPDGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENC 170
Query: 1050 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+ + +T + HQ + + D++ ++ G
Sbjct: 171 ILGLLLNNKTRILVTHQ--LQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 4e-10
Identities = 54/219 (24%), Positives = 83/219 (37%), Gaps = 55/219 (25%)
Query: 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH 217
+ + L+ILK V V+K G ++GP SGK+TLL LAG DP+ SG V G
Sbjct: 16 VGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQ 72
Query: 218 D---MDE----FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARRE 270
+DE + R ++ Q + I +T E +A +G + A+
Sbjct: 73 PLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAG--AKAL 130
Query: 271 KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI---RGISGG 327
L+ +GL G + +SGG
Sbjct: 131 --------------------------------LEAVGL--------GKRLTHYPAQLSGG 150
Query: 328 QKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL 366
+++RV G LF DE + LD +T +I + L
Sbjct: 151 EQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
|
Length = 228 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 4e-10
Identities = 47/199 (23%), Positives = 86/199 (43%), Gaps = 39/199 (19%)
Query: 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQET 938
+V + VS + + G + AL+G +GAGK+TLM +L G + G I + G
Sbjct: 17 VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSG----EIRVDGKE----- 67
Query: 939 FARISGYCEQND--------IHSPFV-----TIYESLLFSAWLRLSPEVD-SETRKMFID 984
RI D +H F+ T+ E+++ +D + R I
Sbjct: 68 -VRIKS---PRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR-IK 122
Query: 985 EVMEL--VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1042
E+ E + ++P + V+ LS +++R+ I L ++ +DEPT+ L +
Sbjct: 123 ELSERYGLPVDPDAK-------VADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQE 175
Query: 1043 AAIVMRTVRNTVDTGRTVV 1061
A + +R G+T++
Sbjct: 176 ADELFEILRRLAAEGKTII 194
|
Length = 501 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 4e-10
Identities = 60/225 (26%), Positives = 97/225 (43%), Gaps = 42/225 (18%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ- 936
D +L+ ++ +PG ++G SG+GK+TL +L T + G + + G
Sbjct: 467 PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH--GQVLVDGVDLAIA 524
Query: 937 --ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR-----LSPEVDSETRKMFIDEVMEL 989
R G V + E++LFS +R +P E V+
Sbjct: 525 DPAWLRRQMG-----------VVLQENVLFSRSIRDNIALCNPGAPFE-------HVIHA 566
Query: 990 VELNPLRQSLVGLP----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
+L + LP G LS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 567 AKLAGAHDFISELPQGYNTEVGEKGA-NLSGGQRQRIAIARALVGNPRILIFDEATSALD 625
Query: 1040 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+ A++MR +R + GRTV+ H+ + A D + ++++G
Sbjct: 626 YESEALIMRNMR-EICRGRTVIIIAHR--LSTVRACDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 4e-10
Identities = 72/279 (25%), Positives = 109/279 (39%), Gaps = 74/279 (26%)
Query: 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYN 215
++ +T LKDVS + G + ++G +GK+TL+ + G PT SG+V +
Sbjct: 9 KVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVD 65
Query: 216 GHDMDEFVP------QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARR 269
G D+ +R I QH N + TV E +A E+A
Sbjct: 66 GTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALP-------------LEIAGV 112
Query: 270 EKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQK 329
KA E V L+++GL D D +SGGQK
Sbjct: 113 PKAE-------------------IEERV--LELLELVGL---EDK--ADAYPAQLSGGQK 146
Query: 330 KRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQP 384
+RV + ALA L DE ++ LD TT I+ LR IN + +L
Sbjct: 147 QRVG-----IARALANNPKVLLCDEATSALDPETTQSILALLRD---INRELGLTIVLI- 197
Query: 385 APETY------DLFDDIILLSDGQIVYQGPRELVLEFFA 417
T+ + D + ++ G++V +G V E FA
Sbjct: 198 ---THEMEVVKRICDRVAVMEKGEVVEEGT---VEEVFA 230
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 4e-10
Identities = 60/226 (26%), Positives = 94/226 (41%), Gaps = 33/226 (14%)
Query: 899 LMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKKQETFARISGYCEQNDIHSPF 955
L+G SG GKTTL+ +LAG + G + ++ P R Q+ P
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHL----RHINMVFQSYALFPH 56
Query: 956 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1015
+T+ E++ F +R +V K + E + LV+L LS Q++R
Sbjct: 57 MTVEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEFADR-----KPHQLSGGQQQR 108
Query: 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEA 1074
+ +A LV P I+ +DEP S LD + + ++ + G T V H D EA
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH----DQEEA 164
Query: 1075 F---DELFLMKRG-------GQEIYVGPLGRHSCHLI---SYFEAI 1107
D + +M++G +EIY P I + FEA
Sbjct: 165 MTMSDRIAIMRKGKIAQIGTPEEIYEEPANLFVARFIGEINVFEAT 210
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 4e-10
Identities = 74/296 (25%), Positives = 121/296 (40%), Gaps = 60/296 (20%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF---- 222
L D+S I G T L+G SGK+T+ + G L P + +T +G +
Sbjct: 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81
Query: 223 VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ ++ DN TV + +AF + V R EM+ I D D
Sbjct: 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAV-PRPEMIK----------IVRDVLAD 130
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT-TGEMMVGP 341
V M DY D +SGGQK+RV G + V P
Sbjct: 131 VGM-------------LDYI---------------DSEPANLSGGQKQRVAIAGILAVEP 162
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
+ + +DE ++ LD + QI+ +R+ + + VIS+ E ++ D +++L DG
Sbjct: 163 KI-IILDESTSMLDPAGKEQILKLIRK-LKKKNNLTVISITHDIDEA-NMADQVLVLDDG 219
Query: 402 QIVYQG-PRELV--LEFFASMGFRCP---------KRKGVADFLQEVTSRKDQRQY 445
+++ QG P E+ +E +G P K KG++ QE+ + + QY
Sbjct: 220 KLLAQGSPVEIFSKVEMLKEIGLDIPFVYKLKNKLKEKGIS-VPQEINTEEKLVQY 274
|
Length = 282 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 5e-10
Identities = 54/216 (25%), Positives = 96/216 (44%), Gaps = 20/216 (9%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIT-----ISGYPK 934
+ VS PG + ++G SG+GK+TL L G + G +G + + G +
Sbjct: 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82
Query: 935 KQET--FARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV 990
++ + Q+ + S P +TI + A LRL + + E++E V
Sbjct: 83 REMRKLRGKRIAMIFQDPMTSLNPVMTI-GDQIREA-LRLHGKGSRAEARKRAVELLEQV 140
Query: 991 EL-NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1049
L +P R+ P LS R+R+ IA+ L P ++ DEPT+ LD A ++
Sbjct: 141 GLPDPERRDR--YPHQ--LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDL 196
Query: 1050 VRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+++ + G V+ H + + E D + +M +G
Sbjct: 197 LKDLQRELGMAVLFITHDLGV-VAELADRVVVMYKG 231
|
Length = 539 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 5e-10
Identities = 60/210 (28%), Positives = 91/210 (43%), Gaps = 24/210 (11%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFA 940
L GVS G +T ++G +G GKTTL+ L G K+G I+ P
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLP----PHE 71
Query: 941 RIS---GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 997
R Y Q P +T+ E+LL R I + E+ EL P+ +
Sbjct: 72 RARAGIAYVPQGREIFPRLTVEENLLTGLAAL-------PRRSRKIPD--EIYELFPVLK 122
Query: 998 SLVGLPGVSG-LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056
++G G G LS Q+++L IA LV P ++ +DEPT G+ + R +R
Sbjct: 123 EMLGRRG--GDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE 180
Query: 1057 GRTVVCTIHQPSIDI-FEAFDELFLMKRGG 1085
G + + Q +D E D ++M+RG
Sbjct: 181 GGMAILLVEQ-YLDFARELADRYYVMERGR 209
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 5e-10
Identities = 77/323 (23%), Positives = 119/323 (36%), Gaps = 67/323 (20%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
++ ++ I G LLGP GKTT+L +AG P SG + +G D+
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAE 84
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
R + Q MTV E +AF R Q E+ R A
Sbjct: 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAA-----EITPRVMEA----------- 128
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
L+++ L+ A +SGGQ++RV +V
Sbjct: 129 ------------------LRMVQLEEFA-----QRKPHQLSGGQQQRVAIARAVVNKPKV 165
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE + LD Q+ N L+ + G + + E + D I+++ DG+I
Sbjct: 166 LLLDESLSALDYKLRKQMQNELKA-LQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIE 224
Query: 405 YQG-PRELVLEFFASMGFRCPKRKGVADFLQE-------VTSRKDQRQYWAHKEKPYRFV 456
G PRE+ + PK VA F+ E V R D+++ A+ E +
Sbjct: 225 QDGTPREI---------YEEPKNLFVARFIGEINIFDATVIERLDEQRVRANVEGRECNI 275
Query: 457 TVQEFAEAFQSFHVGQKISDELR 479
V + GQK+ LR
Sbjct: 276 YVN------FAVEPGQKLHVLLR 292
|
Length = 375 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 6e-10
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T+L D+S I+ G + +LGP +GK+TLL LAG L P+ SG + +G D+ P+
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPK 69
Query: 226 ---RTAAYISQ 233
R AY+ Q
Sbjct: 70 ELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 6e-10
Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 18/191 (9%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 936
D L +G+S G + G +G+GKTTL+ +LAG G + N ++
Sbjct: 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGG--PLDFQR 68
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
++ AR Y +++ E+L F + E ++E + V LN
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRF-----WHADHSDEQ----VEEALARVGLNGFE 119
Query: 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056
V LS Q++R+ +A L++ + +DEPT+ LD A +
Sbjct: 120 DRPVA-----QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCAR 174
Query: 1057 GRTVVCTIHQP 1067
G VV T HQ
Sbjct: 175 GGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 7e-10
Identities = 61/224 (27%), Positives = 93/224 (41%), Gaps = 50/224 (22%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 943
L+ +S R G + ALMG +GAGK+TL+ +L+G G+I I G + FA +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMR---FASTT 74
Query: 944 GYCEQNDIHSPFVTIYESLLFSAWLRLSPE------------------VDSETRKMFIDE 985
+ + IY+ L L PE V+ R++ E
Sbjct: 75 -----AALAAGVAIIYQEL------HLVPEMTVAENLYLGQLPHKGGIVN---RRLLNYE 120
Query: 986 VMEL-----VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040
E V+++P + LS QR+ + IA L N +I DEPTS L A
Sbjct: 121 AREQLEHLGVDIDPDTP-------LKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSA 173
Query: 1041 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
R + R +R GR ++ H+ +IF D + + K G
Sbjct: 174 REIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKDG 216
|
Length = 501 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 7e-10
Identities = 65/218 (29%), Positives = 98/218 (44%), Gaps = 32/218 (14%)
Query: 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITI---SGYPK--------K 935
VS PG + ++G SG+GKTTL+ ++GR T G +T G P+ +
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD--AGTVTYRMRDGQPRDLYTMSEAE 82
Query: 936 QETFARIS-GYCEQNDIH------SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVME 988
+ R G+ QN S I E L+ + R + +E + +E
Sbjct: 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLM-AIGARHYGNIRAEAQDW-----LE 136
Query: 989 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048
VE++ R + LP S ++RL IA LV P ++FMDEPT GLD A ++
Sbjct: 137 EVEIDLDR--IDDLP--RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD 192
Query: 1049 TVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085
+R V + G VV H ++ A D L +MK+G
Sbjct: 193 LLRGLVRELGLAVVIVTHDLAVARLLA-DRLMVMKQGQ 229
|
Length = 258 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 7e-10
Identities = 62/217 (28%), Positives = 101/217 (46%), Gaps = 16/217 (7%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ET 938
LL+ +S F G +T L+G +G+GK+TL+ +L GR G I + P + +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPS-EGEILLDAQPLESWSSKA 82
Query: 939 FARISGYCEQNDIHSPFVTIYESLLFS--AWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
FAR Y Q + +T+ E + W + R+ ++E + LV L PL
Sbjct: 83 FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREK-VEEAISLVGLKPLA 141
Query: 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVD 1055
LV LS +R+R IA+ + + + +DEPTS LD V+ V R + +
Sbjct: 142 HRLV-----DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE 196
Query: 1056 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092
G TV+ +H I++ + + + RGG+ I G
Sbjct: 197 RGLTVIAVLH--DINMAARYCDYLVALRGGEMIAQGT 231
|
Length = 265 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 7e-10
Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 27/175 (15%)
Query: 886 GVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNITISG---YPKKQETF 939
V+ + G + AL+G SG GKTT + + + G +TG I + G Y + +
Sbjct: 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81
Query: 940 A--RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR- 996
A R G Q P ++++++++ A L+L+ D D +ME+ E LR
Sbjct: 82 AMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDR-------DHLMEVAE-RSLRG 131
Query: 997 -------QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
+ + P +GLS Q++RL IA L P I+ MDEPTS LD + A
Sbjct: 132 AALWDEVKDRLKTPA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTA 185
|
Length = 252 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 8e-10
Identities = 64/248 (25%), Positives = 102/248 (41%), Gaps = 45/248 (18%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD---MDEF 222
+LKD+S I+PG ++GP SGK+TL+ L DPT SG + +G D +
Sbjct: 343 PVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLD 399
Query: 223 VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
++ +SQ D + T+RE +A G E+ K A
Sbjct: 400 SLRKRIGIVSQ-DPLLFSGTIRENIAL-------GRPDATDEEIEEALKLANAHEF---- 447
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+ L DT+VG E +SGGQ++R+ ++
Sbjct: 448 ----------------------IANLPDGYDTIVG-ERGVNLSGGQRQRLAIARALLRNP 484
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE ++ LD+ T I + L+ + T +I+ T D II+L +G+
Sbjct: 485 PILILDEATSALDTETEALIQDALK-KLLKGRTTLIIAHR---LSTIKNADRIIVLDNGR 540
Query: 403 IVYQGPRE 410
IV +G E
Sbjct: 541 IVERGTHE 548
|
Length = 567 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 8e-10
Identities = 67/261 (25%), Positives = 106/261 (40%), Gaps = 52/261 (19%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF---V 223
IL D+S IK T ++G SGK+TL L G SG + NG + +
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHT 545
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
++ Y+ Q + +I ++ E L A+ + + A IK D I+
Sbjct: 546 LRQFINYLPQ-EPYIFSGSILENLLLGAK---ENVSQDEIWAACE---IAEIKDD--IEN 596
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
TE E ISGGQK+R+ ++ +
Sbjct: 597 MPLGYQTELSEEGS-------------------------SISGGQKQRIALARALLTDSK 631
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA--VISLLQPAPETYDLFDDIILLSDG 401
L +DE ++ LD+ T +IVN L +++ T V L A ++ D II+L G
Sbjct: 632 VLILDESTSNLDTITEKKIVNNL---LNLQDKTIIFVAHRLSVAKQS----DKIIVLDHG 684
Query: 402 QIVYQGP-RELVLE--FFASM 419
+I+ QG EL+ F+AS+
Sbjct: 685 KIIEQGSHDELLDRNGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 9e-10
Identities = 63/249 (25%), Positives = 99/249 (39%), Gaps = 45/249 (18%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH-----DMD 220
IL D+S + PG ++GP +GKTTLL L G+ P+ SG VT G +
Sbjct: 45 KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGETI 101
Query: 221 EFVPQRTAAYIS--QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ ++ +S H+ TVR+ + S +G E LT A +
Sbjct: 102 FEL-RKRIGLVSSELHERFRVRETVRDVVL-SGFFASIGIYQEDLTA-EDLAAAQWL--- 155
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
L++LG AD G +S G+++RV +
Sbjct: 156 ------------------------LELLGAKHLADRPFGS-----LSQGEQRRVLIARAL 186
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398
V L +DE + GLD Q++N L + A++ + A E F +LL
Sbjct: 187 VKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLL 246
Query: 399 SDGQIVYQG 407
+G++V QG
Sbjct: 247 KEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 1e-09
Identities = 53/220 (24%), Positives = 83/220 (37%), Gaps = 49/220 (22%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----- 221
+LK ++ + G + LLG +GK+TLLL L G L P SG V +G +D
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGL 63
Query: 222 FVPQRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
++ + Q D+ + V + +AF G+ E+ RR + A
Sbjct: 64 LERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSE-----AEVERRVREA------- 111
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
L +G + +SGG+KKRV +
Sbjct: 112 ----------------------LTAVGASGLR-----ERPTHCLSGGEKKRVAIAGAVAM 144
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 380
L +DE + GLD + Q++ LR + T VIS
Sbjct: 145 RPDVLLLDEPTAGLDPAGREQMLAILR-RLRAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 1e-09
Identities = 60/241 (24%), Positives = 99/241 (41%), Gaps = 49/241 (20%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
L+DVS I G L ++LGP GKTTLL +AG + P G++ NG ++ P
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP---SRGSIQLNGRRIEG--PGA 74
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
+ Q++ + + V + +AF + +G+ RRE A
Sbjct: 75 ERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKA-------QRREIA-------------- 113
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE-MMVGPALAL 345
L ++GL + I +SGG ++RV + V P L L
Sbjct: 114 -------------HQMLALVGL---EGA--EHKYIWQLSGGMRQRVGIARALAVEPQL-L 154
Query: 346 FMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS--DGQI 403
+DE LD+ T Q+ L ++ +G V+ + E L +++LS G++
Sbjct: 155 LLDEPFGALDALTREQMQELL-LDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRV 213
Query: 404 V 404
V
Sbjct: 214 V 214
|
Length = 259 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 69/290 (23%), Positives = 105/290 (36%), Gaps = 66/290 (22%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD---MD 220
+ + DV+ I+ G +L+GP SGKTT L + ++PT SG + +G D +D
Sbjct: 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLD 69
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+R Y+ Q +TV E +A + G
Sbjct: 70 PVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDK---------------------- 107
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
+ D L ++GLD D +SGGQ++RV V
Sbjct: 108 ------------ERIKKRADELLDLVGLDPSE---YADRYPHELSGGQQQRVG-----VA 147
Query: 341 PALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395
ALA L MDE LD T Q+ ++ + G ++ + E L D I
Sbjct: 148 RALAADPPILLMDEPFGALDPITRKQLQEEIK-ELQKELGKTIVFVTHDIDEALKLADRI 206
Query: 396 ILLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQ 444
++ G+IV P E++ P V DF E S + R
Sbjct: 207 AVMDAGEIVQYDTPDEIL---------ANPANDFVEDFFGE--SERGLRL 245
|
Length = 309 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 59/220 (26%), Positives = 95/220 (43%), Gaps = 30/220 (13%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE 937
D +L +S G AL+G SG+GK+TL++++ + +G I I G+ +
Sbjct: 12 GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP--RFYDVDSGRILIDGHDVRDY 69
Query: 938 TFA---RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 994
T A R G Q D+ T+ E++ + P E EV E
Sbjct: 70 TLASLRRQIGLVSQ-DVFLFNDTVAENIAYGR-----PGATRE-------EVEEAARAAN 116
Query: 995 LRQSLVGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
+ ++ LP G G LS QR+R+ IA L+ +P I+ +DE TS LD + +
Sbjct: 117 AHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERL 176
Query: 1046 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085
V + + RT H+ S I A D + +++ G
Sbjct: 177 VQAALERLMK-NRTTFVIAHRLST-IENA-DRIVVLEDGK 213
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 1e-09
Identities = 70/287 (24%), Positives = 114/287 (39%), Gaps = 77/287 (26%)
Query: 155 LRI-IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGT 211
L + P+ + + VS +K G + ++G SGK+ L A+ G L V G
Sbjct: 7 LSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGE 66
Query: 212 VTYNGHDMDEFVPQRTA-------AYISQHD-----NHIGEMTVRETLAFSARCQGVGTR 259
+ ++G D+ + A I Q D N + MT+ + +A R G G
Sbjct: 67 ILFDGKDLLSLSEKELRKIRGKEIAMIFQ-DPMTSLNPV--MTIGDQIAEVLRLHGKGLS 123
Query: 260 YEMLTELARRE-KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318
+ E A + GI PDP+ + Y
Sbjct: 124 KKEAKERAIELLELVGI-PDPE---------------RRLKSY---------------PH 152
Query: 319 EMIRGISGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHIN 373
E+ SGG ++RV M+ ALA L DE +T LD + QI++ L++ +
Sbjct: 153 EL----SGGMRQRV-----MIAMALALNPKLLIADEPTTALDVTVQAQILDLLKE-LQRE 202
Query: 374 SGTAVISLLQPAPETYDL------FDDIILLSDGQIVYQGPRELVLE 414
GTA+I + T+DL D + ++ G+IV +GP E + +
Sbjct: 203 KGTALILI------THDLGVVAEIADRVAVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 51/246 (20%), Positives = 96/246 (39%), Gaps = 46/246 (18%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV 223
HL + D++ + G + +LGP +GK+TLL +AG P SG + NG D
Sbjct: 13 HLPMRFDLT--VPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASP 67
Query: 224 P-QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
P +R + + Q +N +TV + + G+ P
Sbjct: 68 PAERPVSMLFQENNLFAHLTVAQNIGL------------------------GLSPG---- 99
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+K A + ++ +GL + +SGGQ++RV +V
Sbjct: 100 --LKLNAEQREKVEAA----AAQVGLAGF-----LKRLPGELSGGQRQRVALARCLVREQ 148
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE + LD + +++ + Q + ++ + + + D ++ L +G+
Sbjct: 149 PILLLDEPFSALDPALRAEMLALVSQ-LCDERKMTLLMVTHHPEDAARIADRVVFLDNGR 207
Query: 403 IVYQGP 408
I QG
Sbjct: 208 IAAQGS 213
|
Length = 231 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 54/186 (29%), Positives = 82/186 (44%), Gaps = 46/186 (24%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 933
L ++ +TAL+G SG GK+TL+ D++ G + I G + G Y
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR----IEGKVLFDGQDIYD 72
Query: 934 KKQETFA---RISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL 989
KK + R+ G Q +PF ++IY+++ + RL D K +DE++E
Sbjct: 73 KKIDVVELRRRV-GMVFQKP--NPFPMSIYDNIAYG--PRLHGIKD----KKELDEIVE- 122
Query: 990 VELNPLRQSL--VGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038
+SL L GLS Q++RL IA L P ++ +DEPTS L
Sbjct: 123 -------ESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSAL 175
Query: 1039 DARAAA 1044
D A
Sbjct: 176 DPIATG 181
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 1e-09
Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 30/193 (15%)
Query: 872 KVQG-VLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYIT---G 925
K + LNG+S G ++G +GAGK+TL++ +AG T G I
Sbjct: 9 KTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGV 68
Query: 926 NITISGYPKKQETFARI-----SGYCEQNDIHSPFVTIYESLLFSAWLR-----LSPEVD 975
++T K+ AR+ +G P +TI E+L A R LS ++
Sbjct: 69 DVTKKSVAKRANLLARVFQDPLAGTA-------PELTIEENLAL-AESRGKKRGLSSALN 120
Query: 976 SETRKMFIDEVMELVE-LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1034
R F + + L L +GL LS QR+ L++ + + P I+ +DE
Sbjct: 121 ERRRSSFRERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEH 175
Query: 1035 TSGLDARAAAIVM 1047
T+ LD + A VM
Sbjct: 176 TAALDPKTAEFVM 188
|
Length = 263 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 59/255 (23%), Positives = 94/255 (36%), Gaps = 63/255 (24%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM----DE-- 221
+ V+ ++ G + LGP +GKTT + L L PT SGT G+D+ +
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVR 65
Query: 222 ----FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
VPQ + ++T RE L R G L + E+A +
Sbjct: 66 RSIGIVPQYASVDE--------DLTGRENLEMMGRLYG-------LPKDEAEERAEEL-- 108
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
L++ L D + SGG ++R+
Sbjct: 109 -------------------------LELFEL-----GEAADRPVGTYSGGMRRRLDIAAS 138
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397
++ LF+DE +TGLD T I + +R G ++ E L D I +
Sbjct: 139 LIHQPDVLFLDEPTTGLDPRTRRAIWDYIRA--LKEEGVTILLTTHYMEEADKLCDRIAI 196
Query: 398 LSDGQIVYQG-PREL 411
+ G+I+ +G P EL
Sbjct: 197 IDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 2e-09
Identities = 65/270 (24%), Positives = 103/270 (38%), Gaps = 54/270 (20%)
Query: 157 IIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG 216
K+R + ++D+S I G + LG +GK+T L L G L PT SG V NG
Sbjct: 29 FFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT---SGKVRVNG 85
Query: 217 HDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
D P R + + M + L + E+L +
Sbjct: 86 KD-----PFRRREEYLRSIGLV--MGQKLQLWW---DLPALDSLEVLKLIYE-------I 128
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE 336
PD D + + + D+ ++L L + + + R +S GQ+ R
Sbjct: 129 PD---DEFAERL-----------DFLTEILDL----EGFLKWPV-RKLSLGQRMRAELAA 169
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI- 395
++ P LF+DE + GLD + I L++ N LL T +FDDI
Sbjct: 170 ALLHPPKVLFLDEPTVGLDVNAQANIREFLKE---YNEERQATVLL-----TTHIFDDIA 221
Query: 396 ------ILLSDGQIVYQGPRELVLEFFASM 419
+L+ GQ+V+ G + E F
Sbjct: 222 TLCDRVLLIDQGQLVFDGTLAQLQEQFGPY 251
|
Length = 325 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 2e-09
Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 20/152 (13%)
Query: 893 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA---RISGYCE 947
G+ TAL G SG+GKT+L++++AG R G I N + +K R GY
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVF 82
Query: 948 QNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 1007
Q+ P T+ +L + W ++ + D+++ L+ + L L PG
Sbjct: 83 QDARLFPHYTVRGNLRYGMW---------KSMRAQFDQLVALLGIEHL---LDRYPGT-- 128
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 2e-09
Identities = 54/210 (25%), Positives = 91/210 (43%), Gaps = 18/210 (8%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP----KKQET 938
+L+GV + R G L L+G +GAGKTTL+ + G T G + ++G +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDDVEALSARAA 75
Query: 939 FARISGYCEQNDIHSPFV--TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
R++ + + F + E R +++ ++ ME +
Sbjct: 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAA--VERAMERTGVA--- 130
Query: 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056
P V+ LS +R+R+ +A L ++ +DEPT+ LD + VR VD
Sbjct: 131 -QFADRP-VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD 188
Query: 1057 GRTVVCTIHQPSIDIFEAF-DELFLMKRGG 1085
G+T V IH +D+ + DEL L+ G
Sbjct: 189 GKTAVAAIH--DLDLAARYCDELVLLADGR 216
|
Length = 402 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 2e-09
Identities = 50/216 (23%), Positives = 81/216 (37%), Gaps = 47/216 (21%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 942
+L GV+ + G + ALMG +G+GK+TL + G G I G
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG----------- 63
Query: 943 SGYCEQNDIHSPFVTIYESL---LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
DI + E +F A+ PE+ F+ V E
Sbjct: 64 ------EDITD--LPPEERARLGIFLAFQY-PPEIPGVKNADFLRYVNE----------- 103
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
G S ++KR I L+ P + +DEP SGLD A +V + + G++
Sbjct: 104 -------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKS 156
Query: 1060 VVCTIHQPSIDIFEAFDELFLM------KRGGQEIY 1089
V+ H + + D + ++ K G +E+
Sbjct: 157 VLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKELA 192
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 3e-09
Identities = 53/214 (24%), Positives = 102/214 (47%), Gaps = 29/214 (13%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNITISGYPKKQ--- 936
L ++ G AL+G SGAGKT+L++ L G ++ G++ I+G ++
Sbjct: 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-----FLPYQGSLKINGIELRELDP 418
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-L 995
E++ + + QN P T+ +++L P+ E + + +E ++ L
Sbjct: 419 ESWRKHLSWVGQNP-QLPHGTLRDNVLLGN-----PDASDEQ----LQQALENAWVSEFL 468
Query: 996 RQSLVGL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050
GL +GLS Q +RL +A L+ ++ +DEPT+ LDA + +VM+ +
Sbjct: 469 PLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQAL 528
Query: 1051 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
N +T + HQ ++ +D++++M+ G
Sbjct: 529 -NAASRRQTTLMVTHQ--LEDLAQWDQIWVMQDG 559
|
Length = 588 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 4e-09
Identities = 58/240 (24%), Positives = 99/240 (41%), Gaps = 49/240 (20%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM--DEFVPQ 225
L +VS + GR+ LGP +GK+T + + G L P SG+V G D+ + Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQ 74
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY- 284
R Y+ +H+ +M VRE L F A +Y
Sbjct: 75 RNIGYLPEHNPLYLDMYVREYLQFIA------------------------------GIYG 104
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
MK + + +I +++GL +G +S G ++RV + ++
Sbjct: 105 MKGQLLKQRVEEMI-----ELVGLRPEQHKKIGQ-----LSKGYRQRVGLAQALIHDPKV 154
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE +TGLD + +I N ++ I +I E + D +I+++ G+IV
Sbjct: 155 LILDEPTTGLDPNQLVEIRNVIKN---IGKDKTIILSTHIMQEVEAICDRVIIINKGKIV 211
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 4e-09
Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 20/213 (9%)
Query: 885 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISG 944
VS PG + ++G SG+GK+TL+ LAGR G T + ++S
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD--HGTATYIMRSGAELELYQLSE 77
Query: 945 YCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFI------------DEVMELVEL 992
+ + + + ++++ +R+S + R M I + +E VE+
Sbjct: 78 AERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEI 137
Query: 993 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052
+P R + LP S ++RL IA LV P ++FMDEPT GLD A ++ +R
Sbjct: 138 DPTR--IDDLP--RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRG 193
Query: 1053 TV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
V D G V+ H + A L +M++G
Sbjct: 194 LVRDLGLAVIIVTHDLGVARLLA-QRLLVMQQG 225
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 5e-09
Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 28/198 (14%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ---ET 938
L+ VS RPG A++G G+GK+TL+ +L G + T G ++ + G +Q
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG----SVLLDGVDIRQIDPAD 536
Query: 939 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
R GY Q D + T+ +++ A P D E I EL + +
Sbjct: 537 LRRNIGYVPQ-DPRLFYGTLRDNIALGA-----PYADDEE----ILRAAELAGVTEFVRR 586
Query: 999 -------LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
+G G LS QR+ + +A L+ +P I+ +DEPTS +D R+ ++
Sbjct: 587 HPDGLDMQIGERGR-SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLK 645
Query: 1052 NTVDTGRTVVCTIHQPSI 1069
+ G+T+V H+ S+
Sbjct: 646 RWL-AGKTLVLVTHRTSL 662
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 5e-09
Identities = 50/211 (23%), Positives = 87/211 (41%), Gaps = 14/211 (6%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNITISGYPKKQETFA 940
+L +S PG A++G +GAGKTTL+ +L G + G +T G +
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR 105
Query: 941 RISGYC--EQNDIHSPFVTIYESLL--FSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
+ G E ++ T+ + +L F A + + E + ++EL+ L
Sbjct: 106 KRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLA 165
Query: 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR--NTV 1054
G LS +++R+ IA LV +P ++ +DEP GLD A ++ +
Sbjct: 166 DRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAAS 220
Query: 1055 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085
++ H +I F L+K G
Sbjct: 221 PGAPALLFVTHHAE-EIPPCFTHRLLLKEGE 250
|
Length = 257 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 5e-09
Identities = 53/206 (25%), Positives = 98/206 (47%), Gaps = 31/206 (15%)
Query: 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR--ISGYCE 947
F G +TA++G SG+GK+TL++++AG +T +G + I+G A +S +
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ--SGRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 948 QNDIHSPFVTIYES--LLFSAWLRLSPE----VDSETRKMFIDEVMELVELNPLRQSLVG 1001
+N++ +T+ ++ L S L+L+ E ++ ++ + + R
Sbjct: 78 ENNLF-AHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLE-------KR----- 124
Query: 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTV--DTGR 1058
LPG LS +R+R+ +A LV + ++ +DEP + LD A A M + + +T
Sbjct: 125 LPGE--LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE--MLDLVLDLHAETKM 180
Query: 1059 TVVCTIHQPSIDIFEAFDELFLMKRG 1084
TV+ HQP D + + G
Sbjct: 181 TVLMVTHQPE-DAKRLAQRVVFLDNG 205
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (141), Expect = 6e-09
Identities = 56/201 (27%), Positives = 98/201 (48%), Gaps = 18/201 (8%)
Query: 892 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGNITISGYPKKQET--FARISGYC 946
+ G TAL+G +G+GK+TL+ L G + T G + G+I +S K++E + G
Sbjct: 30 KKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVV 89
Query: 947 EQNDIHSPFVTIYESLLFSAWLRLSPE---VDSETRKMFIDEVMELVELNPLRQSLVGLP 1003
Q P ++E + + P+ + E + E +E+V L + P
Sbjct: 90 FQ----FPESQLFEETVLKD-VAFGPQNFGIPKEKAEKIAAEKLEMVGLA--DEFWEKSP 142
Query: 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1063
LS Q +R+ IA L P ++ +DEPT+GLD +A +M+ + +G+TVV
Sbjct: 143 --FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLV 200
Query: 1064 IHQPSIDIFEAFDELFLMKRG 1084
H D+ + D ++L+++G
Sbjct: 201 THLMD-DVADYADYVYLLEKG 220
|
Length = 288 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 7e-09
Identities = 55/261 (21%), Positives = 102/261 (39%), Gaps = 65/261 (24%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG---HDMDEFV 223
+LKD++ IKPG ++GP +GKTTL+ L DP G + +G D+
Sbjct: 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISRKS 74
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ + Q D + T+ E + +P+ +
Sbjct: 75 LRSMIGVVLQ-DTFLFSGTIMENIRLG-------------------------RPNATDEE 108
Query: 284 YMKAIATEGQEANVITDYYLKVL--GLDVCADTMVGDEMIRG--ISGGQKKRVTTGEMMV 339
++A G ++ L G DT++G+ G +S G+++ + M+
Sbjct: 109 VIEAAKEAG------AHDFIMKLPNGY----DTVLGE---NGGNLSQGERQLLAIARAML 155
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------SLLQPAPETYDLFD 393
L +DE ++ +D+ T I L + + G I S ++ A D
Sbjct: 156 RDPKILILDEATSNIDTETEKLIQEALEK---LMKGRTSIIIAHRLSTIKNA-------D 205
Query: 394 DIILLSDGQIVYQGPRELVLE 414
I++L DG+I+ +G + +L
Sbjct: 206 KILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 7e-09
Identities = 60/257 (23%), Positives = 103/257 (40%), Gaps = 55/257 (21%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
LK+ + + G +LG SGK+TLL LAG DP G++T NG ++ Q
Sbjct: 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQ 408
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
T + ++Q H+ T+R+ L + PD D
Sbjct: 409 ALRETISVLTQ-RVHLFSGTLRDNLRLA-------------------------NPDAS-D 441
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+ A + ++ +T +G E R +SGG+++R+ ++ A
Sbjct: 442 EELWAALQQVGLEKLLES-------APDGLNTWLG-EGGRRLSGGERRRLALARALLHDA 493
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-----FDDIIL 397
+DE + GLD T Q++ L + H T ++ T+ L D II+
Sbjct: 494 PLWLLDEPTEGLDPITERQVLALLFE--HAEGKTLLMV-------THRLRGLERMDRIIV 544
Query: 398 LSDGQIVYQGPRELVLE 414
L +G+I+ +G +L
Sbjct: 545 LDNGKIIEEGTHAELLA 561
|
Length = 573 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 7e-09
Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 26/171 (15%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISG---YPKKQE 937
L G+ F +TAL+G SG GK+T + L G ITGN+++ G Y ++
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 938 T--FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 995
+ G Q PF +IYE++++ LRL+ D K +DE +E L
Sbjct: 81 VVQLRKQVGMVFQQPNPFPF-SIYENVIYG--LRLAGVKD----KAVLDEAVE----TSL 129
Query: 996 RQSLVG-------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
+Q+ + LS Q++R+ IA L P +I +DEPTS LD
Sbjct: 130 KQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 7e-09
Identities = 62/223 (27%), Positives = 101/223 (45%), Gaps = 26/223 (11%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY---PKKQET 938
+LNG+S G A++G SGAGK+T++ +L +G+ITI G Q++
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN--SGSITIDGQDIRDVTQQS 334
Query: 939 FARISGYCEQ-----NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 993
R G Q ND TI ++ + + EV + I + ++ L
Sbjct: 335 LRRAIGIVPQDTVLFND------TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQ--SLP 386
Query: 994 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053
+ VG G+ LS +++R+ IA ++ NP I+ +DE TS LD + +R
Sbjct: 387 EGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALRE- 444
Query: 1054 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRH 1096
V GRT + H+ S I +A DE+ ++ G + G H
Sbjct: 445 VSAGRTTLVIAHRLST-IIDA-DEIIVLDNG----RIVERGTH 481
|
Length = 497 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 8e-09
Identities = 65/257 (25%), Positives = 95/257 (36%), Gaps = 56/257 (21%)
Query: 183 LLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-RTAAYISQHDNHIGEM 241
LLGP GKTTLL LAG P SG++ +G D+ P R + Q M
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHM 57
Query: 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDY 301
TV E +AF + + V E+ R A
Sbjct: 58 TVEENVAFGLKMRKVPR-----AEIKPRVLEA---------------------------- 84
Query: 302 YLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTF 360
L+++ L D +SGGQ++RV +V P + L +DE + LD
Sbjct: 85 -LRLVQL-----EEFADRKPHQLSGGQQQRVALARALVFKPKI-LLLDEPLSALDKKLRD 137
Query: 361 QIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG-PRELVLEFFASM 419
Q+ L+ I G + + E + D I ++ G+I G P E+ E
Sbjct: 138 QMQLELKT-IQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE----- 191
Query: 420 GFRCPKRKGVADFLQEV 436
P VA F+ E+
Sbjct: 192 ----PANLFVARFIGEI 204
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 9e-09
Identities = 48/216 (22%), Positives = 72/216 (33%), Gaps = 49/216 (22%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--V 223
T+ D+S + G + GP +GKTTLL LAG L P +G V + G +
Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRES 72
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ Y+ E+T E L F R G G + E + AG+
Sbjct: 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNA-ATIWEALAQVGLAGL-------- 123
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
D + +S GQ++RV + + PA
Sbjct: 124 ---------------------------------EDLPVGQLSAGQQRRVALARLWLSPAP 150
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
+DE T LD + + H G V+
Sbjct: 151 LWILDEPFTALDKEGVALLTALMAA--HAAQGGIVL 184
|
Length = 209 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 51/207 (24%), Positives = 85/207 (41%), Gaps = 26/207 (12%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE 937
EDK +L GV+ + G + A+MG +G+GK+TL +AG + +G I G Q+
Sbjct: 11 EDKEIL-KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG----QD 65
Query: 938 TF-------ARISGYCE-QNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMF-----ID 984
AR + Q P V+ E L + R S + E + +
Sbjct: 66 LLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGE-EPLDLLDFLKLLK 124
Query: 985 EVMELVELNP--LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1042
+ L+ ++ L +S+ G S ++KR I + P + +DE SGLD A
Sbjct: 125 AKLALLGMDEEFLNRSV-----NEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDA 179
Query: 1043 AAIVMRTVRNTVDTGRTVVCTIHQPSI 1069
IV + + R+ + H +
Sbjct: 180 LKIVAEGINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-08
Identities = 51/217 (23%), Positives = 76/217 (35%), Gaps = 50/217 (23%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE--F 222
+ + +S + G + GP GKTTLL LAG L P SG V +NG + E
Sbjct: 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD---SGEVRWNGTALAEQRD 69
Query: 223 VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
P R Y+ E++ E L F A G G + + LA
Sbjct: 70 EPHRNILYLGHLPGLKPELSALENLHFWAAIHG-GAQRTIEDALAA-------------- 114
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+GL D +S GQ++R+ + + A
Sbjct: 115 -----------------------VGLTGFEDLPAAQ-----LSAGQQRRLALARLWLSRA 146
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
+DE +T LD + + LR H+ G V+
Sbjct: 147 PLWILDEPTTALDKAGVALLAGLLRA--HLARGGIVL 181
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 1e-08
Identities = 49/218 (22%), Positives = 77/218 (35%), Gaps = 55/218 (25%)
Query: 835 AEAEASRPKKKGMVLPFEPHS-----LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSG 889
E K P L F+ V D +LL +S
Sbjct: 296 EERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYD------------GGRLLLKDLSF 343
Query: 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQN 949
G A++G +GAGK+TL+ +LAG G ++G + + G K GY +Q+
Sbjct: 344 RIDRGDRIAIVGPNGAGKSTLLKLLAG--ELGPLSGTVKV-GETVK-------IGYFDQH 393
Query: 950 DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL--VGLPG--- 1004
+T + E + +R L G G
Sbjct: 394 --------------RDELD------PDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQ 433
Query: 1005 ---VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
V LS ++ RL +A L+ P+++ +DEPT+ LD
Sbjct: 434 EKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 44/194 (22%), Positives = 71/194 (36%), Gaps = 62/194 (31%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
+ +L+D++ ++ G +LGP GK+TLL +AG PT SG V +G + P
Sbjct: 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGPGP 72
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
Y+ Q D + +TV + +A +G RE+A
Sbjct: 73 DI--GYVFQEDALLPWLTVLDNVALGLELRGKSKA-------EARERA------------ 111
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
L+++GL D +SGG ++RV A+A
Sbjct: 112 ---------------KELLELVGLAGFEDKYPHQ-----LSGGMRQRV---------AIA 142
Query: 345 ---------LFMDE 349
L +DE
Sbjct: 143 RALATRPKLLLLDE 156
|
Length = 248 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 27/215 (12%)
Query: 876 VLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY------ITGNITI 929
V +L +S PG +TAL+G +GAGK+TL+ LAG TGG +TG++T+
Sbjct: 9 VARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68
Query: 930 SGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAW--LRLSPEVDSETRKMFID 984
+G P AR+ Q + + E +L + R + + ++
Sbjct: 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEI-AW 127
Query: 985 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL---------VANPSIIFMDEPT 1035
+ + L L V+ LS + R+ A L P + +DEPT
Sbjct: 128 QALALAGATALVGR-----DVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPT 182
Query: 1036 SGLDARAAAIVMRTVRNTVDTGRTVVCTI-HQPSI 1069
+ LD ++ TVR V I H P++
Sbjct: 183 AALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNL 217
|
Length = 272 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 18/188 (9%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 943
L G+S + G TAL+G +GAGK+TL+ L G G + + G E +
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKWVR 78
Query: 944 ---GYCEQNDIHSPFV-TIYESLLFSAW-LRLSP-EVDSETRKMFIDEVMELVELNPLRQ 997
G Q+ F T+++ + F + L EV+ E ++ V + R
Sbjct: 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVE-----EALKAVRMWDFRD 133
Query: 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1057
LS Q+KR+ IA L +P +I +DEP + LD R +M + + G
Sbjct: 134 K-----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQG 188
Query: 1058 RTVVCTIH 1065
+TV+ H
Sbjct: 189 KTVIVATH 196
|
Length = 274 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 70/286 (24%), Positives = 122/286 (42%), Gaps = 73/286 (25%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG---HDMD 220
+LK +S ++ G + +++GP SGK+TLL L G +P SG++T +G D
Sbjct: 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKK 70
Query: 221 EFVPQRT-AAYISQHDNHIGEMTVRE--TLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+ + R + Q N +TV E TLA ++ + KA +
Sbjct: 71 DILKLRRKVGMVFQQFNLFPHLTVLENVTLA--------------PVKVKKLSKAEARE- 115
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE- 336
KA+ L+ +GL AD D +SGGQ++RV
Sbjct: 116 --------KALE------------LLEKVGL---ADKA--DAYPAQLSGGQQQRVAIARA 150
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-F--- 392
+ + P + LF DE ++ LD ++++ ++ G +I + T+++ F
Sbjct: 151 LAMDPKVMLF-DEPTSALDPELVGEVLDVMKDL--AEEGMTMIIV------THEMGFARE 201
Query: 393 --DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436
D +I + G+I+ +GP E EFF + PK + FL ++
Sbjct: 202 VADRVIFMDQGKIIEEGPPE---EFFDN-----PKSERTRQFLSKI 239
|
Length = 240 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 27/194 (13%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L G+S + G + ++G SG+GK+TL+ L G G IT + G K R
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRR 77
Query: 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEV----MELVELNPLRQ 997
G Q P +T+ E++ L+P +K+ E +EL+E
Sbjct: 78 KVGMVFQQFNLFPHLTVLENVT------LAPVK---VKKLSKAEAREKALELLEK----- 123
Query: 998 SLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052
VGL + LS Q++R+ IA L +P ++ DEPTS LD V+ +++
Sbjct: 124 --VGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKD 181
Query: 1053 TVDTGRTVVCTIHQ 1066
+ G T++ H+
Sbjct: 182 LAEEGMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 48/234 (20%), Positives = 90/234 (38%), Gaps = 50/234 (21%)
Query: 178 GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDN 236
G + ++GP +GK+TLL +AG ++P SG++ N P QR + + Q +N
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEP---ASGSIKVNDQSHTGLAPYQRPVSMLFQENN 80
Query: 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEAN 296
+TVR+ + G+ P +K A + ++
Sbjct: 81 LFAHLTVRQNIGL------------------------GLHPG------LKLNAEQQEKVV 110
Query: 297 VITDYYLKVLGLDVCADTMVGDEMIR---GISGGQKKRVTTGEMMVGPALALFMDEISTG 353
D + D + R +SGGQ++RV +V P L +DE +
Sbjct: 111 ------------DAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSA 158
Query: 354 LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
LD +++ ++Q T ++ + + + I ++S G+I
Sbjct: 159 LDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 22/196 (11%)
Query: 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ 936
+L G+ + G + ++G SG+GK+TL+ + G I + ++ K
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFS-AWLRLSPEVDSETRKMFIDEVMELVELNPL 995
+ G Q P +T+ E++ + ++ + ++E R +EL+E
Sbjct: 72 NELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEER------ALELLEK--- 122
Query: 996 RQSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050
VGL + LS Q++R+ IA L NP ++ DEPTS LD V+ +
Sbjct: 123 ----VGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVM 178
Query: 1051 RNTVDTGRTVVCTIHQ 1066
++ + G T+V H+
Sbjct: 179 KDLAEEGMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 3e-08
Identities = 76/288 (26%), Positives = 115/288 (39%), Gaps = 58/288 (20%)
Query: 154 YLRIIPSKKR--HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGT 211
YL I +KR T LKD+S +K G LLGP GKTTLL +AG T +GT
Sbjct: 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGT 60
Query: 212 VTYNGHDMDEFVPQ-RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARRE 270
+ G D+ PQ R + Q +TV + +A+ + +G+G E
Sbjct: 61 IYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRA-------EVAE 113
Query: 271 KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKK 330
+ A L ++GL + +SGGQ++
Sbjct: 114 RVA---------------------------ELLDLVGL-----PGSERKYPGQLSGGQQQ 141
Query: 331 RVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389
RV + P L L +DE + LD+ + +RQ + G I + E
Sbjct: 142 RVALARALATSPGL-LLLDEPLSALDARVREHLRTEIRQ-LQRRLGVTTIMVTHDQEEAL 199
Query: 390 DLFDDIILLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFLQEV 436
+ D I++++ G I G P+E+ +R P VADF+ EV
Sbjct: 200 SMADRIVVMNHGVIEQVGTPQEI---------YRHPATPFVADFVGEV 238
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 3e-08
Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 21/204 (10%)
Query: 872 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931
KV G K+ L VS + G + ++G SGAGK+TL+ + G + +G++ + G
Sbjct: 9 KVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDG 66
Query: 932 Y------PKKQETFARISGYCEQ--NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFI 983
K+ R G Q N + S T++E++ + P+ + E R +
Sbjct: 67 TDLTLLSGKELRKARRRIGMIFQHFNLLSSR--TVFENVALPLEIAGVPKAEIEER---V 121
Query: 984 DEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1043
E++ELV L + P + LS Q++R+ IA L NP ++ DE TS LD
Sbjct: 122 LELLELVGLEDKADAY---P--AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETT 176
Query: 1044 AIVMRTVRNT-VDTGRTVVCTIHQ 1066
++ +R+ + G T+V H+
Sbjct: 177 QSILALLRDINRELGLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 61/201 (30%), Positives = 94/201 (46%), Gaps = 31/201 (15%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 936
D LVL VS PG +TAL+G SG+GK+T++ +L + GG + + G P
Sbjct: 26 DTLVL-QDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG----QVLLDGKP--- 77
Query: 937 ETFARISGYCEQNDIHSPFVTI-YESLLFSAWLRLSPEVDSETRKMFIDEVMELV----- 990
IS Y E +HS + E +LF+ L+ + ++ + V E
Sbjct: 78 -----ISQY-EHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSF--ECVKEAAQKAHA 129
Query: 991 -----ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
EL + VG G S LS Q++R+ IA L+ NP ++ +DE TS LDA +
Sbjct: 130 HSFISELASGYDTEVGEKG-SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQ 188
Query: 1046 VMRTVRNTVDTGRTVVCTIHQ 1066
V + + + RTV+ H+
Sbjct: 189 VQQALYDW-PERRTVLVIAHR 208
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 4e-08
Identities = 64/243 (26%), Positives = 108/243 (44%), Gaps = 35/243 (14%)
Query: 855 SLTFDEV--VYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 912
++ FD V Y P E + ++ V+ F G A++G +G+GK+TL+
Sbjct: 2 TIRFDNVSYTYQKGTPYEHQA----------IHDVNTEFEQGKYYAIVGQTGSGKSTLIQ 51
Query: 913 VLAG--RKTGGYIT-GNITISGYPKKQE--TFARISGYCEQNDIHSPFVTIYESLLFSAW 967
+ + T G +T +ITI+ K + + G Q ES LF
Sbjct: 52 NINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQ---------FPESQLFEDT 102
Query: 968 LRLSPEVDSETRKMFIDEVME-----LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVEL 1022
+ + KM +DEV L++L R + P +S Q +++ I L
Sbjct: 103 VEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSP--FQMSGGQMRKIAIVSIL 160
Query: 1023 VANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081
NP II +DEPT+GLD ++ VMR +++ D +T++ H + ++ DE+ +M
Sbjct: 161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVM 219
Query: 1082 KRG 1084
K G
Sbjct: 220 KEG 222
|
Length = 286 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 4e-08
Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 44/186 (23%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 942
+L+GV+ +TALMG SG+GK+TL+ V N I YP+ AR+
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-----------NRLIELYPE-----ARV 61
Query: 943 SG--YCEQNDIHS--------------------PFVTIYESLLFSAWLRLSPEVDSETRK 980
SG Y + DI P ++I+E++ L+L+ V S+ ++
Sbjct: 62 SGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALG--LKLNRLVKSK-KE 118
Query: 981 MF--IDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038
+ + +E +L + + P LS Q++RL IA L P ++ DEPT+ L
Sbjct: 119 LQERVRWALEKAQLWDEVKDRLDAPAGK-LSGGQQQRLCIARALAFQPEVLLADEPTANL 177
Query: 1039 DARAAA 1044
D A
Sbjct: 178 DPENTA 183
|
Length = 250 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 4e-08
Identities = 57/167 (34%), Positives = 79/167 (47%), Gaps = 37/167 (22%)
Query: 896 LTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YPKKQETFARIS-G 944
+TAL+G SG GK+TL+ D++ G K ITG +T+ G Y RI G
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDGEDIYGNIDVADLRIKVG 86
Query: 945 YCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR------- 996
Q +PF ++IYE++ + LR D K +DEV+E LR
Sbjct: 87 MVFQKP--NPFPMSIYENVAYG--LRAQGIKD----KKVLDEVVE----RSLRGAALWDE 134
Query: 997 -QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1042
+ + GLS Q++RL IA + P +I MDEPTS LD A
Sbjct: 135 VKDRLKSHAF-GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 5e-08
Identities = 58/256 (22%), Positives = 94/256 (36%), Gaps = 67/256 (26%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+ ++S + PG + LLGP +GKTT + G L+PT G +T+NG + + +
Sbjct: 16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKN 72
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
R Y+ + +MTV + L + A +G M
Sbjct: 73 RI-GYLPEERGLYPKMTVEDQLKYLAELKG-----------------------------M 102
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS----GGQKKRVTTGEMMVGP 341
E +L+ L + + + I G Q+K ++ P
Sbjct: 103 PK-----AEIQKKLQAWLERLE--------IVGKKTKKIKELSKGNQQKIQFISAVIHEP 149
Query: 342 ALALFMDEISTGLDSSTTFQIVNC--LRQNI--HINSGTAVI---SLLQPAPETYDLFDD 394
L L +DE +GLD VN L+ I G +I ++ E L D
Sbjct: 150 EL-LILDEPFSGLDP------VNVELLKDAIFELKEEGATIIFSSHRMEHVEE---LCDR 199
Query: 395 IILLSDGQIVYQGPRE 410
+++L GQ V G E
Sbjct: 200 LLMLKKGQTVLYGTVE 215
|
Length = 300 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 5e-08
Identities = 62/251 (24%), Positives = 109/251 (43%), Gaps = 47/251 (18%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-- 224
IL ++S IKPG + ++G SGK+TL + P +G V +GHD+ P
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAW 73
Query: 225 -QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+R + Q +N + ++R+ +A + DP + +
Sbjct: 74 LRRQVGVVLQ-ENVLFNRSIRDNIALA---------------------------DPGMSM 105
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
EA + + + L DT+VG++ G+SGGQ++R+ ++
Sbjct: 106 E------RVIEAAKLAGAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPR 158
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIH-INSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L DE ++ LD + I+ +N+H I +G VI ++ T D II++ G+
Sbjct: 159 ILIFDEATSALDYESEHAIM----RNMHDICAGRTVI-IIAHRLSTVKNADRIIVMEKGR 213
Query: 403 IVYQGPRELVL 413
IV QG + +L
Sbjct: 214 IVEQGSHDELL 224
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 5e-08
Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 37/198 (18%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYIT-GNITISGYPKKQETF 939
L +S + +PG ++G +G+GK++L+ L R + G I + IS
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALF-RLVELSSGSILIDGVDISKIGLH---- 74
Query: 940 ARISGYCEQNDIHSPFVTI-YESLLFSAWLR--LSPE---VDSETRKMFIDEVMELVELN 993
D+ S I + +LFS +R L P D E + + +E V L
Sbjct: 75 ----------DLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEE-----LWQALERVGLK 119
Query: 994 PLRQSLVG------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
+SL G G LS QR+ L +A L+ I+ +DE T+ +D A++
Sbjct: 120 EFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQ 179
Query: 1048 RTVRNTVDTGRTVVCTIH 1065
+T+R TV+ H
Sbjct: 180 KTIR-EAFKDCTVLTIAH 196
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 6e-08
Identities = 60/259 (23%), Positives = 93/259 (35%), Gaps = 65/259 (25%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
++ +S ++ G LLGP +GKTT L L G P +G+++ G E VP
Sbjct: 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCG----EPVPS 73
Query: 226 RT------AAYISQHDNHIGEMTVRETLAFSARCQGVGT-----RYEMLTELARREKAAG 274
R + Q DN + TVRE L R G+ L E A+ E A
Sbjct: 74 RARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA- 132
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334
D + +SGG K+R+T
Sbjct: 133 -------------------------------------------DAKVGELSGGMKRRLTL 149
Query: 335 GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394
+V L +DE +TGLD + LR + G ++ E L D
Sbjct: 150 ARALVNDPDVLVLDEPTTGLDPQARHLMWERLRS--LLARGKTILLTTHFMEEAERLCDR 207
Query: 395 IILLSDGQIVYQG-PRELV 412
+ ++ +G+ + +G P L+
Sbjct: 208 LCVIEEGRKIAEGAPHALI 226
|
Length = 306 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 6e-08
Identities = 60/221 (27%), Positives = 89/221 (40%), Gaps = 54/221 (24%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
L DVS I+ G L GP +GKTTLL L G L P+ G V G D++ R
Sbjct: 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRL-RGR 72
Query: 227 TAAYISQH------DNHI-GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+ + D + + TV E +A +G R E+ RR AA
Sbjct: 73 QLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKER-----EIQRRVGAA------ 121
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
L+ +GL+ AD +SGG+++RV +V
Sbjct: 122 -----------------------LRQVGLEHKADAFPEQ-----LSGGEQQRVAIARAIV 153
Query: 340 G-PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
P L L DE + LD + +I++ L++ ++ GT VI
Sbjct: 154 NSPPL-LLADEPTGNLDPDLSERILDLLKR-LNK-RGTTVI 191
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 6e-08
Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 35/173 (20%)
Query: 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISG---YPKKQETFA 940
V+ P +TA +G SG GK+T++ L G + G + + G Y + A
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82
Query: 941 --RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
R G Q P ++I ++++ A L+L+ K +DE++E +S
Sbjct: 83 VRRTIGMVFQRPNPFPTMSIRDNVV--AGLKLN----GVRNKKDLDELVE--------KS 128
Query: 999 LVG------------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
L G PG GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 129 LRGANLWNEVKDRLDKPG-GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 7e-08
Identities = 58/247 (23%), Positives = 98/247 (39%), Gaps = 57/247 (23%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--V 223
+L D+S +K G + LGP +GKTT + + G + P SG +T++G +
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEA 70
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+R A I + +T RE L AR G+ ID
Sbjct: 71 LRRIGALIEAPGFY-PNLTARENLRLLARLLGI--------------------RKKRIDE 109
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG-PA 342
L V+GL + ++G S G K+R+ ++G P
Sbjct: 110 ------------------VLDVVGLKD-----SAKKKVKGFSLGMKQRLGIALALLGNPD 146
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS--LLQPAPETYDLFDDIILLSD 400
L L +DE + GLD ++ + ++ T +IS LL E + D I +++
Sbjct: 147 L-LILDEPTNGLDPDGIKELRELIL-SLRDQGITVLISSHLLS---EIQKVADRIGIINK 201
Query: 401 GQIVYQG 407
G+++ +G
Sbjct: 202 GKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 7e-08
Identities = 55/240 (22%), Positives = 97/240 (40%), Gaps = 47/240 (19%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
L+D++ ++ G L ++LGP GKTTLL +AG + G++T +G ++ P
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEG--PGA 70
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
+ Q++ + V++ +AF + GV R E A
Sbjct: 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKM-------QRLEIA-------------- 109
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346
+ LK +GL+ I +SGGQ++RV + L
Sbjct: 110 ------HQM-------LKKVGLE-----GAEKRYIWQLSGGQRQRVGIARALAANPQLLL 151
Query: 347 MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS--DGQIV 404
+DE LD+ T Q+ L + +G V+ + E + +++LLS G++V
Sbjct: 152 LDEPFGALDAFTREQMQTLLLKLWQ-ETGKQVLLITHDIEEAVFMATELVLLSPGPGRVV 210
|
Length = 255 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 7e-08
Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 19/187 (10%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 942
LL +S G L L G +GAGKTTL+ ++AG G I K++
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIKKDLCTYQ 73
Query: 943 SGYC---EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
C ++ I +P++T+ E+ L+ ++ + I E+ L L L
Sbjct: 74 KQLCFVGHRSGI-NPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLEHLIDYP 124
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
GL LS+ Q++++ + ++ + +DEP LD + ++ ++ G
Sbjct: 125 CGL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGA 179
Query: 1060 VVCTIHQ 1066
V+ T HQ
Sbjct: 180 VLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 8e-08
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD--- 220
T+L DVS I+ G + LLGP SGK+TLL +AG +P SG++ +G D+
Sbjct: 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDLTDLE 68
Query: 221 -EFVPQRTA-AYISQHDNHIGEMTVRETLAF 249
E P R + Q +TV E +A
Sbjct: 69 DELPPLRRRIGMVFQDFALFPHLTVLENIAL 99
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 8e-08
Identities = 54/209 (25%), Positives = 89/209 (42%), Gaps = 24/209 (11%)
Query: 867 MPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT 924
M E+K G L +LN +S + R G A+ G SG GK+TL+ ++A T G +
Sbjct: 2 MLLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL 61
Query: 925 --GNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMF 982
G +S K E + + YC Q T+ ++L+F +R R
Sbjct: 62 FEGE-DVSTL--KPEAYRQQVSYCAQTPALFG-DTVEDNLIFPWQIR----NRRPDRAAA 113
Query: 983 IDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1042
+D L+ L S++ ++ LS +++R+ + L P I+ +DE TS LD
Sbjct: 114 LD----LLARFALPDSILTKN-ITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESN 168
Query: 1043 A----AIVMRTVRNTVDTGRTVVCTIHQP 1067
++ R VR + V+ H
Sbjct: 169 KRNIEEMIHRYVR---EQNVAVLWITHDK 194
|
Length = 223 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 8e-08
Identities = 57/218 (26%), Positives = 92/218 (42%), Gaps = 37/218 (16%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGRKTGGYITG-NITISGYPKK 935
+N A G + +MG+SG+GK+T + +L AG+ +I G NI +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI---FIDGENIMKQSPVEL 65
Query: 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 995
+E + G Q P +TI ++ L + RK ++ +EL++L
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELL---GWPEQERK---EKALELLKL--- 116
Query: 996 RQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050
VGL LS ++R+ +A L A P I+ MDE S LD + +
Sbjct: 117 ----VGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDEL 172
Query: 1051 RNTVDT-GRTVVCTIHQPSIDIFEAF---DELFLMKRG 1084
+ T +T+V H D+ EA D + +MK G
Sbjct: 173 KKLQATLQKTIVFITH----DLDEAIRIGDRIVIMKAG 206
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 1e-07
Identities = 64/256 (25%), Positives = 107/256 (41%), Gaps = 54/256 (21%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
L+ +S ++ G ++GP SGK+TL + G PT SG+V +G D+ ++ +
Sbjct: 332 PTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRE 388
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ Y+ Q D + TV E +A R+ G DP+
Sbjct: 389 TFGKHIGYLPQ-DVELFPGTVAENIA----------RF-------------GENADPE-- 422
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
K I EA + + +L L DT++G +SGGQ++R+ + G
Sbjct: 423 ---KII-----EAAKLAGVHELILRLPDGYDTVIGPGGA-TLSGGQRQRIALARALYGDP 473
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI-----SLLQPAPETYDLFDDIIL 397
+ +DE ++ LD + N ++ + T V+ SLL D I++
Sbjct: 474 KLVVLDEPNSNLDEEGEQALANAIKA-LKARGITVVVITHRPSLLGCV-------DKILV 525
Query: 398 LSDGQIVYQGPRELVL 413
L DG+I G R+ VL
Sbjct: 526 LQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 71/280 (25%), Positives = 109/280 (38%), Gaps = 70/280 (25%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP--- 224
+ +++ I G +L+GP SGKTT + + ++PT SG + +G D+ E P
Sbjct: 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVEL 73
Query: 225 QRTAAYISQHDNHIG---EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
+R Y+ Q IG MTV E +A + + RE+A
Sbjct: 74 RRKIGYVIQ---QIGLFPHMTVEENIALVPKLLKWP-------KEKIRERA--------- 114
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGP 341
D L ++GLD D +SGGQ++RV V
Sbjct: 115 ------------------DELLALVGLD---PAEFADRYPHELSGGQQQRVG-----VAR 148
Query: 342 ALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396
ALA L MDE LD T Q+ + + G ++ + E + L D I
Sbjct: 149 ALAADPPLLLMDEPFGALDPITRDQLQEEFK-RLQQELGKTIVFVTHDIDEAFRLADRIA 207
Query: 397 LLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFLQE 435
++ +G+IV G P E+ R P VA+F+
Sbjct: 208 IMKNGEIVQVGTPDEI---------LRSPANDFVAEFVGA 238
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 1e-07
Identities = 63/218 (28%), Positives = 96/218 (44%), Gaps = 34/218 (15%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG--YPKKQETFAR 941
L V+ PG + AL+G +GAGK+TLM VL+G G ITI+ Y K A
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT--KGTITINNINYNKLDHKLAA 78
Query: 942 ISG----YCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 997
G Y E + I +T+ E+L L T+K+ +++ E+
Sbjct: 79 QLGIGIIYQELSVIDE--LTVLENLYIGRHL---------TKKVCGVNIIDWREMRVRAA 127
Query: 998 SL---VGL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA---IV 1046
+ VGL V+ LS ++ L IA L+ + +I MDEPTS L + ++
Sbjct: 128 MMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLI 187
Query: 1047 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
M +R G +V H+ + +I D +MK G
Sbjct: 188 MNQLRK---EGTAIVYISHKLA-EIRRICDRYTVMKDG 221
|
Length = 510 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 69/261 (26%), Positives = 116/261 (44%), Gaps = 71/261 (27%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT---LKVSG-TVTYNGHDMDEFV 223
LK ++ + G + LLGP +GK+TL L G L PT + + G + Y+ + E
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEV- 76
Query: 224 PQRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
++T + Q+ D+ + TV E +AF G+ E+ +R K A
Sbjct: 77 -RKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKE-----EVEKRVKEA--------- 121
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT-TGEMMVGP 341
+KA+ EG E ++ +SGGQKKRV G + + P
Sbjct: 122 --LKAVGMEGFE-----------------------NKPPHHLSGGQKKRVAIAGILAMKP 156
Query: 342 ALALFMDEISTGLDSSTTFQIVNCL----RQNIHINSGTAVISLLQPAPETYDL------ 391
+ + +DE ++GLD QI+ L ++ I T +IS T+D+
Sbjct: 157 EI-IVLDEPTSGLDPMGASQIMKLLYDLNKEGI-----TIIIS-------THDVDLVPVY 203
Query: 392 FDDIILLSDGQIVYQG-PREL 411
D + ++SDG+I+ +G P+E+
Sbjct: 204 ADKVYVMSDGKIIKEGTPKEV 224
|
Length = 275 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 49/186 (26%), Positives = 76/186 (40%), Gaps = 32/186 (17%)
Query: 893 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---TGNITISGYPKKQETFARISGYCEQN 949
G L L+G +GAGKTTL+ R G I G + ++G + R GY Q
Sbjct: 5 KGELLGLLGPNGAGKTTLL-----RAILGLIPPAKGTVKVAGASPGKGW--RHIGYVPQR 57
Query: 950 DIHS-----PFVTIYESLL-----FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
H P +++ +++ WLR D + + + V L L
Sbjct: 58 --HEFAWDFP-ISVAHTVMSGRTGHIGWLRRPCVADFAA----VRDALRRVGLTELADRP 110
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
VG LS QR+R+ +A L PS++ +DEP +GLD ++ G
Sbjct: 111 VG-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTA 165
Query: 1060 VVCTIH 1065
++ T H
Sbjct: 166 ILMTTH 171
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-07
Identities = 52/194 (26%), Positives = 91/194 (46%), Gaps = 26/194 (13%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 943
L+G++ RPG AL+G SGAGK+TL +L + +G I + G +Q
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLL--LRFYDPQSGRILLDGVDLRQ------- 406
Query: 944 GYCEQNDIHSPFVTI-YESLLFSAWLR----------LSPEVDSETRKMFIDEVMELVEL 992
+ ++ + + + +LF+A + EV++ R E + L
Sbjct: 407 --LDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFIS--AL 462
Query: 993 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052
+ +G GV+ LS QR+R+ IA ++ + I+ +DE TS LDA + +V + +
Sbjct: 463 PEGYDTYLGERGVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL-E 520
Query: 1053 TVDTGRTVVCTIHQ 1066
T+ GRT + H+
Sbjct: 521 TLMKGRTTLIIAHR 534
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 1e-07
Identities = 59/251 (23%), Positives = 106/251 (42%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T+ ++++ I G T ++GP GK+TLL L+ + P G V +G + + +
Sbjct: 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP---AHGHVWLDGEHIQHYASK 77
Query: 226 RTAAYI---SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
A I +Q+ G++TV+E +A RY R K D +
Sbjct: 78 EVARRIGLLAQNATTPGDITVQELVARG--------RYPHQPLFTRWRKE-------DEE 122
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
KA+ G IT + D+ + +SGGQ++R ++
Sbjct: 123 AVTKAMQATG-----ITH---------------LADQSVDTLSGGQRQRAWIAMVLAQET 162
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+ +DE +T LD S ++ L + ++ G + ++L + +I L +G+
Sbjct: 163 AIMLLDEPTTWLDISHQIDLLELLSE-LNREKGYTLAAVLHDLNQACRYASHLIALREGK 221
Query: 403 IVYQG-PRELV 412
IV QG P+E+V
Sbjct: 222 IVAQGAPKEIV 232
|
Length = 265 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 60/188 (31%), Positives = 87/188 (46%), Gaps = 45/188 (23%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 933
L V +TA +G SG GK+T + D + G + +TG IT+ G Y
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR----VTGKITLDGEDIYD 90
Query: 934 KKQ---ETFARISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETR-KMFIDEVME 988
+ E AR+ G Q +PF +IYE++ + P + R K +DE++E
Sbjct: 91 PRLDVVELRARV-GMVFQKP--NPFPKSIYENVAYG------PRIHGLARSKAELDEIVE 141
Query: 989 LVELNPLRQSLVGL----------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038
LR++ GL PG +GLS Q++RL IA + +P +I MDEP S L
Sbjct: 142 ----TSLRKA--GLWEEVKDRLHEPG-TGLSGGQQQRLCIARAIAVSPEVILMDEPCSAL 194
Query: 1039 DARAAAIV 1046
D A A V
Sbjct: 195 DPIATAKV 202
|
Length = 267 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 1e-07
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 32/181 (17%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 933
L G+S + A +G SG GK+T + D++ + + G I I G Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRNIYD 74
Query: 934 KKQET--FARISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV 990
K + + G Q +PF +I+E++ + LR++ D+ + ++E ++
Sbjct: 75 KGVQVDELRKNVGMVFQRP--NPFPKSIFENVAYG--LRVNGVKDNAFIRQRVEETLKGA 130
Query: 991 EL-----NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
L + L++S L G Q++RL IA + +PS++ MDEP S LD + A
Sbjct: 131 ALWDEVKDKLKESAFALSG------GQQQRLCIARAMAVSPSVLLMDEPASALDPISTAK 184
Query: 1046 V 1046
V
Sbjct: 185 V 185
|
Length = 250 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 53/181 (29%), Positives = 76/181 (41%), Gaps = 36/181 (19%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAG-RKTGGYITGNITISGYPKK 935
L ++ + +TAL+G SG GK+TL+ D++ G R TG + I
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 936 QETFARISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 994
R G Q +PF +IYE++ + P + E K +D ++E
Sbjct: 82 VVALRRKIGMVFQRP--NPFPKSIYENVAYG------PRIHGEKNKKTLDTIVE------ 127
Query: 995 LRQSLVGLP-----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1043
+SL G LS Q++RL IA L NP +I MDEP S LD A
Sbjct: 128 --KSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIAT 185
Query: 1044 A 1044
A
Sbjct: 186 A 186
|
Length = 253 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---KKQET 938
L+ VS + G + AL+G +G+GK+TL+ +AG +G I I G E
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEE 70
Query: 939 FARISGYCEQ 948
R GY Q
Sbjct: 71 LRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 320 MIRGISGGQKKRVTTGEMMVG-PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAV 378
+ +SGGQ++RV ++ P L L +DE ++GLD ++ +++ LR+ G V
Sbjct: 77 YVPQLSGGQRQRVALARALLLNPDL-LLLDEPTSGLDPASRERLLELLRE--LAEEGRTV 133
Query: 379 ISLLQPAPETYDLFDDIILLSDGQ 402
I + D +I+L DG+
Sbjct: 134 IIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 45/205 (21%), Positives = 71/205 (34%), Gaps = 51/205 (24%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-- 224
+L +V+ I G + L+GP GK+TLL + G L +G + N +D +P
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM-LPAA 75
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
QR + Q ++V + L F+ A +K
Sbjct: 76 QRQIGILFQDALLFPHLSVGQNLLFAL--------------------PATLK-------- 107
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
G + L+ GLD +SGGQ+ RV ++ A
Sbjct: 108 -------GNARRNAANAALERSGLDGAFHQDPAT-----LSGGQRARVALLRALLAQPKA 155
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQN 369
L +DE + LD + LR
Sbjct: 156 LLLDEPFSRLDVA--------LRDQ 172
|
Length = 213 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-07
Identities = 52/193 (26%), Positives = 75/193 (38%), Gaps = 27/193 (13%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+L++VS + PG L+G +GK+TLL LAG+L+P SG VT V
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVT---RPKGLRV-- 68
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
Y+SQ E TV + + +G G E+L EL D +
Sbjct: 69 ---GYLSQEPPLDPEKTVLDYVI-----EGFGELRELLAELEEAYALLADPDDELLAELE 120
Query: 286 KAIATEGQ---EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+ EA L LG D V +SGG ++RV ++
Sbjct: 121 ALLEELDGWTLEARAEEA--LLGLGFPD-EDRPVSS-----LSGGWRRRVALARALLEEP 172
Query: 343 LALFMDEISTGLD 355
L +DE + LD
Sbjct: 173 DLLLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 50/202 (24%), Positives = 84/202 (41%), Gaps = 48/202 (23%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
IL ++S ++ G L+ GP GK+TLL +A + PT SGT+ + G D+ P+
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPE 77
Query: 226 R---TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+Y +Q G+ TV + L F +++ +PDP
Sbjct: 78 IYRQQVSYCAQTPTLFGD-TVYDNLIFP---------WQI----------RNQQPDP--- 114
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+ L+ L DT++ + I +SGG+K+R++ +
Sbjct: 115 ---AIFLDD-----------LERFALP---DTIL-TKNIAELSGGEKQRISLIRNLQFMP 156
Query: 343 LALFMDEISTGLDSSTTFQIVN 364
L +DEI++ LD S VN
Sbjct: 157 KVLLLDEITSALDESNK-HNVN 177
|
Length = 225 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-07
Identities = 65/227 (28%), Positives = 105/227 (46%), Gaps = 39/227 (17%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L+ V+ RP + ALMG +GAGK+TL+ L G +K +G+I G +E +
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQG----KEIDFK 65
Query: 942 ISGYCEQNDI---HSPFVTIYE-SLLFSAWLRLSPEVDSETRKMFIDE----------VM 987
S +N I H + + S++ + WL P T+ MF+D+
Sbjct: 66 SSKEALENGISMVHQELNLVLQRSVMDNMWLGRYP-----TKGMFVDQDKMYRDTKAIFD 120
Query: 988 EL-VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046
EL ++++P + V+ LS Q + + IA N I+ MDEPTS L + +
Sbjct: 121 ELDIDIDPRAK-------VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHL 173
Query: 1047 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093
+R + G +V H+ +IF+ DE+ ++ R GQ I PL
Sbjct: 174 FTIIRKLKERGCGIVYISHKME-EIFQLCDEITIL-RDGQWIATQPL 218
|
Length = 491 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 2e-07
Identities = 73/276 (26%), Positives = 115/276 (41%), Gaps = 52/276 (18%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF- 222
+L D+S I G++ LLGP SGKTTLL +AG T SG + ++G D+
Sbjct: 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLH 70
Query: 223 VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R ++ QH MTV + +AF LT L RRE+ P+
Sbjct: 71 ARDRKVGFVFQHYALFRHMTVFDNIAFG------------LTVLPRRER-------PNAA 111
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM-VGP 341
+ L+++ L AD +SGGQK+RV + V P
Sbjct: 112 AIKAKVTQ-----------LLEMVQLAHLADRYPAQ-----LSGGQKQRVALARALAVEP 155
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
+ L +DE LD+ ++ LRQ +H + + E ++ D ++++S G
Sbjct: 156 QI-LLLDEPFGALDAQVRKELRRWLRQ-LHEELKFTSVFVTHDQEEAMEVADRVVVMSQG 213
Query: 402 QIVYQG-PRELVLEFFASMGFRCPKRKGVADFLQEV 436
I G P ++ +R P + V +F+ EV
Sbjct: 214 NIEQAGTPDQV---------WREPATRFVLEFMGEV 240
|
Length = 353 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 16/177 (9%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP------KKQ 936
+L VS + G L+G SG GK+TL +L G + G ++ G K++
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQDLYQLDRKQR 83
Query: 937 ETFARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 994
F R Q+ + P +T+ + + LR +D +K I E++++V L
Sbjct: 84 RAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMVGLRS 141
Query: 995 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
+ LP LS Q +R+ IA L P +I +DE S LD A+++ +R
Sbjct: 142 --EDADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 17/168 (10%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP-------KK 935
+L+ VS + G + A++G SG+GK+TL+ +L G T +G++ +G P K
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAK 81
Query: 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 995
E + G+ Q P T E++ + + +R + E++ V L
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRAL---EMLAAVGLEHR 138
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1043
S LS +R+R+ IA LV NP ++ DEPT LDAR A
Sbjct: 139 ANHRP-----SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 3e-07
Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 23/183 (12%)
Query: 891 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET---FARIS-GYC 946
F +TA +G +GAGKTT + +L G +G + + G K ET R S G C
Sbjct: 953 FYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGG--KDIETNLDAVRQSLGMC 1008
Query: 947 EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006
Q++I +T+ E +LF A L+ E ++ ++ ++E L+ R
Sbjct: 1009 PQHNILFHHLTVAEHILFYAQLKGRSW---EEAQLEMEAMLEDTGLHHKRNE-----EAQ 1060
Query: 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA---RAAAIVMRTVRNTVDTGRTVVCT 1063
LS +++L++A+ V + ++ +DEPTSG+D R+ ++ R +GRT++ +
Sbjct: 1061 DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR----SGRTIIMS 1116
Query: 1064 IHQ 1066
H
Sbjct: 1117 THH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 63/259 (24%), Positives = 105/259 (40%), Gaps = 53/259 (20%)
Query: 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD--------MD 220
+DVS + PG + ++G SGK+TLL LAG+L P GT TY +
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLS 76
Query: 221 EFVPQRTA----AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
E +R ++ Q+ M V R +G R+
Sbjct: 77 EAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARH---------------- 120
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE 336
Y AT D+ +V ++ + D++ R SGG ++R+
Sbjct: 121 -------YGNIRATAQ-------DWLEEV---EIDPTRI--DDLPRAFSGGMQQRLQIAR 161
Query: 337 MMV-GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395
+V P L +FMDE + GLD S ++++ LR + + G AVI + L +
Sbjct: 162 NLVTRPRL-VFMDEPTGGLDVSVQARLLDLLRGLV-RDLGLAVIIVTHDLGVARLLAQRL 219
Query: 396 ILLSDGQIVYQGPRELVLE 414
+++ G++V G + VL+
Sbjct: 220 LVMQQGRVVESGLTDQVLD 238
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 58/259 (22%), Positives = 98/259 (37%), Gaps = 55/259 (21%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
K+ +L +VS I+ G LLG GK+TL L G P GTV++ G D+
Sbjct: 20 AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLY 76
Query: 221 EFVP------QRTAAYISQHDNHIG----EMTVRETLAFSARCQGVGTRYEMLTELARRE 270
+ +R + Q + MTVR+ + R L E ++
Sbjct: 77 QLDRKQRRAFRRDVQLVFQ--DSPSAVNPRMTVRQIIGEPLR------HLTSLDESEQKA 128
Query: 271 KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKK 330
+ A + L ++GL ++ D++ R +SGGQ +
Sbjct: 129 RIAEL---------------------------LDMVGLR--SEDA--DKLPRQLSGGQLQ 157
Query: 331 RVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389
R+ + V P L + +DE + LD I+ LR+ + GTA + +
Sbjct: 158 RINIARALAVKPKL-IVLDEAVSNLDMVLQAVILELLRK-LQQAFGTAYLFITHDLRLVQ 215
Query: 390 DLFDDIILLSDGQIVYQGP 408
+ ++ GQIV +
Sbjct: 216 SFCQRVAVMDKGQIVEECD 234
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 58/206 (28%), Positives = 96/206 (46%), Gaps = 28/206 (13%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGN-ITISGYPKKQET 938
L GV+ + G +L+G SG GK+TL+++++G + T G + G IT G P +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG-PDRMVV 59
Query: 939 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
F QN P++T+ E++ A R+ P++ R+ ++E + LV L ++
Sbjct: 60 F--------QNYSLLPWLTVRENIAL-AVDRVLPDLSKSERRAIVEEHIALVG---LTEA 107
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 1057
PG LS ++R+ IA L P ++ +DEP LDA + + +
Sbjct: 108 ADKRPG--QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR 165
Query: 1058 RTVVCTIHQPSIDIFEAFDELFLMKR 1083
TV+ H D+ EA L L R
Sbjct: 166 VTVLMVTH----DVDEA---LLLSDR 184
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 66/254 (25%), Positives = 106/254 (41%), Gaps = 58/254 (22%)
Query: 855 SLTFDEV--VYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 912
S+ F+ V +YS P M+ +G L+ +S G AL+G +G+GK+TLM
Sbjct: 2 SIKFENVDYIYSPGTP--MEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQ 51
Query: 913 VLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP 972
+G ITI+GY ET G + SL+F P
Sbjct: 52 HFNALLKPS--SGTITIAGYHITPET-----GNKNLKKLRKKV-----SLVFQF-----P 94
Query: 973 EVDSETRKMFIDEVMELVELNPLR----------QSLVGLPGVSGLSTE----------- 1011
E ++F + V++ VE P ++L L V GLS +
Sbjct: 95 EA-----QLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKV-GLSEDLISKSPFELSG 148
Query: 1012 -QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 1070
Q +R+ IA + P I+ +DEP +GLD +M+ ++ G TV+ H D
Sbjct: 149 GQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-D 207
Query: 1071 IFEAFDELFLMKRG 1084
+ E D++ +++ G
Sbjct: 208 VAEYADDVLVLEHG 221
|
Length = 287 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 3e-07
Identities = 41/192 (21%), Positives = 73/192 (38%), Gaps = 57/192 (29%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 943
L + + VL + GVSG+GK+TL+
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV-------------------------------- 38
Query: 944 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSL 999
+Y S A L S + +FID++ L+++ L Q L
Sbjct: 39 -----------NEGLYASG--KARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKL 85
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1057
S LS + +R+ +A EL + P ++ +DEP++GL + ++ ++ +D G
Sbjct: 86 ------STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLG 139
Query: 1058 RTVVCTIHQPSI 1069
TV+ H +
Sbjct: 140 NTVILIEHNLDV 151
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 4e-07
Identities = 57/277 (20%), Positives = 100/277 (36%), Gaps = 68/277 (24%)
Query: 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH 217
K L +VS I+ G ++G SGK+TL LAG P+ SG++ +G
Sbjct: 13 YGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGK 69
Query: 218 DMDEFVPQRTAA----YISQH-DNHIG-EMTVRETLAFSARCQGVGTRYEMLTELARREK 271
+ + + Q + + TV L+ R G+ + + EL +
Sbjct: 70 PLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQ-- 127
Query: 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKR 331
G+ P + ++ G GQ++R
Sbjct: 128 -VGLPPS------------------FLDRRPHELSG-------------------GQRQR 149
Query: 332 VTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQN--------IHINSGTAVISLL 382
+ ++ P L L +DE ++ LD S QI+N L + + I+ A++
Sbjct: 150 IAIARALIPEPKL-LILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALV--- 205
Query: 383 QPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASM 419
+ D I ++ +GQIV GP E +L +
Sbjct: 206 ------EHMCDRIAVMDNGQIVEIGPTEELLSHPSHP 236
|
Length = 252 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 44/202 (21%), Positives = 85/202 (42%), Gaps = 42/202 (20%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHDM-----D 220
L VS P +T L+GP SGK+TLL ++ L+P + ++G++ YNGH++ D
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
++ + Q N M++ E + + R +G+ + + + + K A I +
Sbjct: 81 TVDLRKEIGMVFQQPNPF-PMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK 139
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
++ A+ G+SGGQ++RV ++
Sbjct: 140 DRLHDSAL----------------------------------GLSGGQQQRVCIARVLAT 165
Query: 341 PALALFMDEISTGLDSSTTFQI 362
+ +DE ++ LD + +I
Sbjct: 166 SPKIILLDEPTSALDPISAGKI 187
|
Length = 252 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 4e-07
Identities = 53/212 (25%), Positives = 86/212 (40%), Gaps = 61/212 (28%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLL--LALAGKLDPTLKVSGTVTYNGHD-----M 219
LKD++ I ++T L+GP GK+TLL L L P +V G V +G + +
Sbjct: 22 ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKV 81
Query: 220 DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARR-EKAAGIKPD 278
D +R + Q N M++ + +A+ R G+ + + L E+ K A
Sbjct: 82 DVVELRRRVGMVFQKPNPF-PMSIYDNVAYGLRLHGI--KDKELDEIVESSLKKA----- 133
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR---GISGGQKKRVTTG 335
A+ E V D + + G+SGGQ++R+
Sbjct: 134 --------ALWDE------------------------VKDRLHKSALGLSGGQQQRLC-- 159
Query: 336 EMMVGPALA-----LFMDEISTGLDSSTTFQI 362
+ ALA L MDE ++ LD +T +I
Sbjct: 160 ---IARALAVKPEVLLMDEPTSALDPISTLKI 188
|
Length = 253 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 4e-07
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
IL+ VS + G +T +LG GKTTLL L G L SG++ +G D+ + P
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPH 70
Query: 226 RTA----AYISQHDNHIGEMTVRETL 247
A AY+ Q +TV E L
Sbjct: 71 ERARAGIAYVPQGREIFPRLTVEENL 96
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 4e-07
Identities = 55/254 (21%), Positives = 100/254 (39%), Gaps = 44/254 (17%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHDM-----D 220
+K+V+ ++ G + L+GP GKTT L A+ L P +V+G + +G D+ D
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+R + Q N M+V + + + G+ R + L E+A R D +
Sbjct: 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDR-DHLMEVAERSLRGAALWD-E 137
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
+ +K AT G+SGGQ++R+ +
Sbjct: 138 VKDRLKTPAT--------------------------------GLSGGQQQRLCIARALAV 165
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
L MDE ++ LD ++T +I + + + T +I + + + D
Sbjct: 166 EPEILLMDEPTSALDPASTARIEDLMTD---LKKVTTIIIVTHNMHQAARVSDTTSFFLV 222
Query: 401 GQIVYQGPRELVLE 414
G +V GP + +
Sbjct: 223 GDLVEHGPTDQLFT 236
|
Length = 252 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 47/188 (25%), Positives = 76/188 (40%), Gaps = 60/188 (31%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 936
L ++ +TAL+G SG GK+T + D++ K I G + + G Q
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDG----Q 70
Query: 937 ETFARISGYCEQNDIHS-------------PF-VTIYESLLFSAWLRLSPEVDSETRKMF 982
+ Y D++ PF ++IY+++ + P K
Sbjct: 71 DI------YKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAY------GPRTHGIKDKKK 118
Query: 983 IDEVMELVELNPLRQSLV-----------GLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1031
+DE++E L+ + + L GLS Q++RL IA L P ++ M
Sbjct: 119 LDEIVE----KSLKGAALWDEVKDRLKKSAL----GLSGGQQQRLCIARALAVEPEVLLM 170
Query: 1032 DEPTSGLD 1039
DEPTS LD
Sbjct: 171 DEPTSALD 178
|
Length = 250 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 4e-07
Identities = 50/164 (30%), Positives = 75/164 (45%), Gaps = 30/164 (18%)
Query: 896 LTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGY----PKKQETFARIS- 943
+TA++G SG GKTTL+ D + G + + G I G P+ T R
Sbjct: 31 ITAIIGPSGCGKTTLLRSINRMNDHIPGFR----VEGKIYFKGQDIYDPQLDVTEYRKKV 86
Query: 944 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVME--LVEL---NPLRQS 998
G Q P ++IY+++ F P + K +D ++E L + + ++
Sbjct: 87 GMVFQKPTPFP-MSIYDNVAFG------PRIHGVKSKHKLDRIVEESLKKAALWDEVKSE 139
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1042
L PG LS Q++RL IA L P +I +DEPTS LD A
Sbjct: 140 L-NKPGTR-LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA 181
|
Length = 250 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 4e-07
Identities = 67/220 (30%), Positives = 101/220 (45%), Gaps = 34/220 (15%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG---YITGNITISGYPKKQET 938
L+G + PG + AL+G +GAGK+T+M VL G + G Y+ +T +G QE
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE- 78
Query: 939 FARISGYCEQNDIHS-----PFVTIYESLLF-----SAWLRLSPEVDSETRKMFIDEVME 988
A I IH P +TI E++ + + R+ + +KM+ +
Sbjct: 79 -AGIG------IIHQELNLIPQLTIAENIFLGREFVNRFGRI------DWKKMYAEADKL 125
Query: 989 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048
L LN LR S L V LS +++ + IA L +I MDEPT L + R
Sbjct: 126 LARLN-LRFSSDKL--VGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFR 182
Query: 1049 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088
+R GR +V H+ +IFE D++ + R GQ I
Sbjct: 183 VIRELKSQGRGIVYISHRLK-EIFEICDDVTVF-RDGQFI 220
|
Length = 501 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 4e-07
Identities = 53/193 (27%), Positives = 85/193 (44%), Gaps = 33/193 (17%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
IL+ ++ ++PG + ++GP SGK+TL LAG+ D + GTV + G D+ E P+
Sbjct: 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLELSPE 73
Query: 226 RTAAYISQHDNHIGEMTVRETLAFS--ARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
A GE +AF GV ++ + T L G +P D
Sbjct: 74 DRA----------GEGIF---MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDF 120
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV-GPA 342
+++ + K+ L + D + + G SGG+KKR +M V P
Sbjct: 121 -----------QDLMEE---KIALLKMPEDLLTRSVNV-GFSGGEKKRNDILQMAVLEPE 165
Query: 343 LALFMDEISTGLD 355
L + +DE +GLD
Sbjct: 166 LCI-LDESDSGLD 177
|
Length = 248 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 54/235 (22%), Positives = 95/235 (40%), Gaps = 23/235 (9%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYITGNITISGYPKKQET 938
L+ ++ + + G + AL+G SG+GK+ ++ +L T +G I + G P +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT--QTSGEILLDGRPLLPLS 58
Query: 939 F-ARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 995
R QN + P T+ + + + I E +E V L
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARAL---ILEALEAVGLPDP 115
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1054
+ L P LS +R+ IA+ L+ P + DEPT+ LD A V++ +R
Sbjct: 116 EEVLKKYP--FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
Query: 1055 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG-------QEIYVGPLGRHSCHLIS 1102
G ++ H + + DE+ +M G +EI+ P + L+S
Sbjct: 174 LFGTGILLITHDLGV-VARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLLS 227
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 5e-07
Identities = 74/298 (24%), Positives = 120/298 (40%), Gaps = 86/298 (28%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
LK ++ IK G +T +LG +GK+TL L G L P SG + ++G +D
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP---SSGRILFDGKPID------- 71
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKA 287
Y + G M +RE+ VG ++ DPD ++
Sbjct: 72 --YSRK-----GLMKLRES---------VGMVFQ----------------DPDNQLF--- 96
Query: 288 IATEGQEANVITDYYLKVLGLDVCADTM---VGDEMIR-GI-----------SGGQKKRV 332
A+V D + L + D + V + + R GI S GQKKRV
Sbjct: 97 ------SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRV 150
Query: 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL- 391
++V L +DE + GLD +I+ L + T +I+ T+D+
Sbjct: 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIA-------THDID 203
Query: 392 -----FDDIILLSDGQIVYQG-PRELVL--EFFASMGFRCPKRKGVADFLQEVTSRKD 441
D++ ++ +G+++ QG P+E+ E + R P R G L E+ KD
Sbjct: 204 IVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLRKVNLRLP-RIG---HLMEILKEKD 257
|
Length = 283 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 59/252 (23%)
Query: 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL-KVSGTVTYNGHDMDE-FVPQRT 227
D++ +K G + L+G SGK+ LA+ G L P L + SG + +G + + R
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKA 287
A I Q N T+ A E L L + K A +A
Sbjct: 64 IATIMQ--NPRTAFNPLFTMGNHAI--------ETLRSLGKLSKQA------------RA 101
Query: 288 IATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA--- 344
+ E EA +GL + + + +SGG +R +M+ AL
Sbjct: 102 LILEALEA----------VGLPDPEEVL--KKYPFQLSGGMLQR-----VMIALALLLEP 144
Query: 345 --LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL------FDDII 396
L DE +T LD +++ LR+ + GT ++ + T+DL D++
Sbjct: 145 PFLIADEPTTDLDVVNQARVLKLLRE-LRQLFGTGILLI------THDLGVVARIADEVA 197
Query: 397 LLSDGQIVYQGP 408
++ DG+IV +G
Sbjct: 198 VMDDGRIVERGT 209
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 5e-07
Identities = 67/221 (30%), Positives = 97/221 (43%), Gaps = 47/221 (21%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L VS + G A++G +G+GK+TL +L G G IT+ G +ET
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE----AGTITVGGMVLSEETVWD 78
Query: 942 IS---GYCEQNDIHSP---FV--TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 993
+ G QN P FV T+ + + F E + +E++E V+
Sbjct: 79 VRRQVGMVFQN----PDNQFVGATVQDDVAFGL----------ENIGVPREEMVERVD-Q 123
Query: 994 PLRQSLVGL-------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046
LRQ VG+ P LS Q++R+ IA L P II +DE TS LD R V
Sbjct: 124 ALRQ--VGMEDFLNREP--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREV 179
Query: 1047 MRTVRNTVDTGR-TVVCTIHQPSIDIFEAF--DELFLMKRG 1084
+ TVR + TV+ H D+ EA D + +M +G
Sbjct: 180 LETVRQLKEQKGITVLSITH----DLDEAAQADRVIVMNKG 216
|
Length = 279 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 6e-07
Identities = 70/285 (24%), Positives = 115/285 (40%), Gaps = 77/285 (27%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHDM-----D 220
LK+++ I ++T L+GP GK+TLL +L L P +++ G V ++G D+ D
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARRE-KAAGIKPDP 279
+R + Q N M++ + +A+ R G+ + E L E+ K A + D
Sbjct: 77 VVELRRRVGMVFQKPNPF-PMSIYDNIAYGPRLHGIKDKKE-LDEIVEESLKKAAL-WDE 133
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
D L L G+SGGQ++R+ +
Sbjct: 134 VKD-------------------RLHDSAL--------------GLSGGQQQRLC-----I 155
Query: 340 GPALA-----LFMDEISTGLDSSTTFQI---VNCLRQNIHINSGTAVI---SLLQPAPET 388
ALA L +DE ++ LD T +I + L++ T VI ++ Q A +
Sbjct: 156 ARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKY-----TIVIVTHNMQQAARIS 210
Query: 389 YDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 433
D DG++V GP E + F PK K D++
Sbjct: 211 ----DRTAFFYDGELVEYGPTEQI--------FTNPKEKRTEDYI 243
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 6e-07
Identities = 50/231 (21%), Positives = 90/231 (38%), Gaps = 44/231 (19%)
Query: 178 GRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDN 236
G +T ++GP SGK+TLL +AG P SG V NG D+ P R + + Q +N
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENN 80
Query: 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEAN 296
+TV + + G+ ++ E R+ + K + E
Sbjct: 81 LFAHLTVEQNVGL-----GLSPGLKLTAE--DRQAIEVALARVGLAGLEKRLPGE----- 128
Query: 297 VITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 356
+SGG+++RV ++V L +DE LD
Sbjct: 129 ---------------------------LSGGERQRVALARVLVRDKPVLLLDEPFAALDP 161
Query: 357 STTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
+ ++++ L ++H + V+ + + L ++ L +G+I QG
Sbjct: 162 ALRAEMLD-LVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (125), Expect = 6e-07
Identities = 68/276 (24%), Positives = 109/276 (39%), Gaps = 48/276 (17%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT---LKVSGTVTYNGHDMDEFVP 224
L D+ +K G T L+G SGK+TLL L G L PT + V V + E P
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 225 QRTAAYISQH--DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R + ++ + E TV + +AF + G+
Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPK------------------------ 117
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
++A I L+++GL ++ +SGGQ +RV ++
Sbjct: 118 ----------EKAEKIAAEKLEMVGLA----DEFWEKSPFELSGGQMRRVAIAGILAMEP 163
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE + GLD +++ L ++IH SG V+ + + D D + LL G
Sbjct: 164 EVLVLDEPTAGLDPKARIEMMQ-LFESIH-QSGQTVVLVTHLMDDVADYADYVYLLEKGH 221
Query: 403 IVYQG-PRELVLE--FFASMGFRCPKRKGVADFLQE 435
I+ G P ++ E F + PK AD LQ+
Sbjct: 222 IISCGTPSDVFQEVDFLKAHELGVPKATHFADQLQK 257
|
Length = 288 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 6e-07
Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 11/162 (6%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIT-ISGYPKKQETF 939
+LN +S G + AL+G SG+GKTTL+ ++AG +T G+I + T +S +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD--- 73
Query: 940 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
R G+ Q+ +T+++++ F L + P + +V +L+E+ L
Sbjct: 74 -RKVGFVFQHYALFRHMTVFDNIAFG--LTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA 130
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
P + LS Q++R+ +A L P I+ +DEP LDA+
Sbjct: 131 DRYP--AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 6e-07
Identities = 62/283 (21%), Positives = 100/283 (35%), Gaps = 93/283 (32%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD----- 218
L L +VS I G ++G SGKTT + L L P +GT+ + D
Sbjct: 19 ELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKK 75
Query: 219 --------MDEFVPQRTAA----YISQHDNHIG-----------EMTVRETLAFSARCQG 255
+++ V Q+T I + +G E T+ + + F G
Sbjct: 76 KTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMG 135
Query: 256 VGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315
V +EA Y++++GLD
Sbjct: 136 V----------------------------------SKEEAKKRAAKYIELVGLDE----- 156
Query: 316 VGDEMIR---GISGGQKKRVT-TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIH 371
+ R +SGGQK+RV G + + P L DE + GLD +I+ N++
Sbjct: 157 --SYLQRSPFELSGGQKRRVALAGILAMEPDF-LVFDEPTAGLDPQGVKEILEIF-DNLN 212
Query: 372 INSGTAVISLLQPAPETYDLFDDI-------ILLSDGQIVYQG 407
T ++ T+DL D++ I DG+I+ G
Sbjct: 213 KQGKTIILV-------THDL-DNVLEWTKRTIFFKDGKIIKDG 247
|
Length = 305 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 6e-07
Identities = 54/241 (22%), Positives = 100/241 (41%), Gaps = 50/241 (20%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM---DEFV 223
ILKD+S + G + ++GP +GK+TL+ + +DPT G++ +G D+ D
Sbjct: 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVID 74
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+R + Q H+ E TV++ + + +G
Sbjct: 75 LRRKIGMVFQQP-HLFEGTVKDNIEYGPMLKG---------------------------- 105
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
E NV +YYL ++GL+ T ++ +SGG+ +RV+ +
Sbjct: 106 ----------EKNVDVEYYLSIVGLNKEYAT----RDVKNLSGGEAQRVSIARTLANNPE 151
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L +DE ++ LD ++T +I+ L + VI + + + D L+ G +
Sbjct: 152 VLLLDEPTSALDPTST-EIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGIL 210
Query: 404 V 404
V
Sbjct: 211 V 211
|
Length = 241 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 7e-07
Identities = 36/162 (22%), Positives = 51/162 (31%), Gaps = 50/162 (30%)
Query: 192 TTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTA----AYISQHDNHIGEMTVRETL 247
+TLL + G L PT SGT+ +G D ++ + Q E+TVRE L
Sbjct: 1 STLLKLITGLLQPT---SGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 248 AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307
F R E L+ +G
Sbjct: 58 FFGLR------DKEADARAEE---------------------------------ALERVG 78
Query: 308 LDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDE 349
L D + SGGQK+RV ++ L +DE
Sbjct: 79 LPDFLDREPVGTL----SGGQKQRVAIARALLKKPKLLLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 8e-07
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 32/162 (19%)
Query: 896 LTALMGVSGAGKTTLMDVLAGRK---TGGYITGNITISG---YPKKQETFA--RISGYCE 947
+TAL+G SG GK+T + L + I G + + G Y K + + G
Sbjct: 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVF 91
Query: 948 QNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV--------EL-NPLRQ 997
Q +PF ++IY+++ + P + K +D+++E E+ + L++
Sbjct: 92 QKP--NPFPMSIYDNVAYG------PRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKK 143
Query: 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
S + L G Q++RL IA + P +I MDEPTS LD
Sbjct: 144 SALKLSG------GQQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 8e-07
Identities = 58/219 (26%), Positives = 98/219 (44%), Gaps = 41/219 (18%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTL-------MDVLAGRKTGGYITGNITISGYPKK 935
+L V +PG + G +G+GK++L +D+ G+ + I IS P
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK----IVIDGIDISKLPL- 90
Query: 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLR--LSPEVDSETRKMFIDEVMELVELN 993
+R+S + + + +LFS +R L PE +++ E +E+ +L
Sbjct: 91 HTLRSRLS------------IILQDPILFSGSIRFNLDPECKCTDDRLW--EALEIAQLK 136
Query: 994 PLRQSLVGLPGVSGLSTE--------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
+ +SL G G+ + TE QR+ +A V SI+ MDE T+ +D I
Sbjct: 137 NMVKSLPG--GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENI 194
Query: 1046 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+ + V T RTVV H+ S I +A D + ++ RG
Sbjct: 195 LQKVVM-TAFADRTVVTIAHRVS-TILDA-DLVLVLSRG 230
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 9e-07
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1067
LS +R+ + IA L N ++ +DEPT+ L + + +R G V+ H+
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142
Query: 1068 SIDIFEAFDELFLMKRG 1084
++FE D + +++ G
Sbjct: 143 D-EVFEIADRVTVLRDG 158
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 9e-07
Identities = 58/230 (25%), Positives = 95/230 (41%), Gaps = 38/230 (16%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ--ET 938
+N S G + +MG+SG+GK+TL+ +L T G I I+ + E
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 939 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
+ Q+ P T+ E++ F ++ P+ + E R + E +ELV L
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERAL---EALELVGLEGYADK 160
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT------VRN 1052
LS ++R+ +A L +P I+ MDE S LD ++RT +
Sbjct: 161 YPN-----ELSGGMQQRVGLARALANDPDILLMDEAFSALDP-----LIRTEMQDELLEL 210
Query: 1053 TVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG-------GQEIYVGP 1092
+T+V H D+ EA D + +MK G +EI + P
Sbjct: 211 QAKLKKTIVFITH----DLDEALRIGDRIAIMKDGEIVQVGTPEEILLNP 256
|
Length = 386 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 1e-06
Identities = 67/255 (26%), Positives = 96/255 (37%), Gaps = 55/255 (21%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
++ D+S I G LLGP +GK+T+ L G + P G +T + E VP R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITV----LGEPVPSR 71
Query: 227 TAA------YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+ Q DN E TVRE L R G+ T RE A I
Sbjct: 72 ARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMST----------REIEAVIPS--- 118
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
L+ L+ AD V +SGG K+R+T ++
Sbjct: 119 ---------------------LLEFARLESKADVRVAL-----LSGGMKRRLTLARALIN 152
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
L +DE +TGLD I LR + G ++ E L D + +L
Sbjct: 153 DPQLLILDEPTTGLDPHARHLIWERLRS--LLARGKTILLTTHFMEEAERLCDRLCVLES 210
Query: 401 GQIVYQG-PRELVLE 414
G+ + +G P L+ E
Sbjct: 211 GRKIAEGRPHALIDE 225
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 50/191 (26%), Positives = 92/191 (48%), Gaps = 32/191 (16%)
Query: 890 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR--ISGYCE 947
G + A++G SGAGK+TL++++AG +T +G I I+G A +S +
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQ 78
Query: 948 QNDIHSPFVTIYESLLF--SAWLRLSPE----VDSETRKMFIDEVMELVELNPLRQSLVG 1001
+N++ + +T+ +++ S L+L+ E V++ ++ + ++
Sbjct: 79 ENNLFA-HLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKR------------ 125
Query: 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTG 1057
LPG LS QR+R+ +A LV I+ +DEP S LD RA M + + + +
Sbjct: 126 LPGE--LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE---MLALVSQLCDERK 180
Query: 1058 RTVVCTIHQPS 1068
T++ H P
Sbjct: 181 MTLLMVTHHPE 191
|
Length = 231 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKV-SGTVTYNGHD 218
ILK V+ IK G + L+GP SGK+TL + G P +V G + + G D
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG--HPKYEVTEGEILFKGED 65
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 1e-06
Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 28/185 (15%)
Query: 894 GVLTALMGVSGAGKTTLMDVLAGRKT--GGYITGN-ITISGYPKKQETFARISGYCEQND 950
G + A+MG SGAGK+TL++++AG G I N + +G Q + + + E N
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSML--FQENNL 81
Query: 951 IHSPFVTIYES--LLFSAWLRLSPE----VDSETRKMFIDEVMELVELNPLRQSLVGLPG 1004
+T+ ++ L L+L+ E V +++ I + ++ LP
Sbjct: 82 F--AHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDR------------LPE 127
Query: 1005 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCT 1063
LS QR+R+ +A LV I+ +DEP S LD ++ V+ RT++
Sbjct: 128 --QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMV 185
Query: 1064 IHQPS 1068
H S
Sbjct: 186 THHLS 190
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 55/241 (22%), Positives = 95/241 (39%), Gaps = 50/241 (20%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ- 225
IL ++S ++ G + GP GK+TLL +A + PT SGT+ + G D+ P+
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEA 74
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ +Y +Q G+ TV + L F + R +PD
Sbjct: 75 YRQQVSYCAQTPALFGD-TVEDNLIFPWQ--------------IRNR-----RPDRAA-- 112
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT-TGEMMVGPA 342
A+ L L D+++ + I +SGG+K+R+ + P
Sbjct: 113 ---ALD------------LLARFALP---DSIL-TKNITELSGGEKQRIALIRNLQFMPK 153
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+ L +DEI++ LD S I + + + AV+ + + D +I L G
Sbjct: 154 I-LLLDEITSALDESNKRNIEEMIHRYVR-EQNVAVLWITHDKDQAIRHADKVITLQPGH 211
Query: 403 I 403
Sbjct: 212 A 212
|
Length = 223 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 59/234 (25%), Positives = 96/234 (41%), Gaps = 43/234 (18%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
LK V+ I+ G L+G GK+TLL ++G PT SG V G + E P R
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGPDRM 57
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKA 287
+ Q+ + + +TVRE +A + +L +L++ E+ A
Sbjct: 58 VVF--QNYSLLPWLTVRENIALAVDR--------VLPDLSKSERRA-------------- 93
Query: 288 IATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFM 347
I + ++ ++GL AD G +SGG K+RV + L +
Sbjct: 94 ----------IVEEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLL 138
Query: 348 DEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
DE LD+ T + L Q I V+ + E L D +++L++G
Sbjct: 139 DEPFGALDALTRGNLQEELMQ-IWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 20/166 (12%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP------KK 935
LN VS + + G AL+G SG GK+TL +L G + G N++ G P +
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQG----NVSWRGEPLAKLNRAQ 83
Query: 936 QETFARISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 993
++ F R Q+ I + P T+ E + LR +D R E++ V+L+
Sbjct: 84 RKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVDLD 141
Query: 994 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
L P LS Q +R+ +A L P ++ +DE S LD
Sbjct: 142 D--SVLDKRPP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 1e-06
Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 33/214 (15%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNITISGYPKKQETFAR 941
L G+S + G AL+G +G GK+TL+ +L T + G I ++G P
Sbjct: 356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLL----TRAWDPQQGEILLNGQP-------- 403
Query: 942 ISGYCEQNDIHSPFVTIYESL-LFSAWLR-----LSPEVDSETRKMFIDEVMELVELNPL 995
I+ Y E + + + + LFSA LR +P E + EV++ V L L
Sbjct: 404 IADYSEA-ALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEA----LIEVLQQVGLEKL 458
Query: 996 RQSLVGLP---GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050
+ GL G G LS +++RL IA L+ + ++ +DEPT GLDA ++ +
Sbjct: 459 LEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELL 518
Query: 1051 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+TV+ H+ + E FD + +M G
Sbjct: 519 A-EHAQNKTVLMITHR--LTGLEQFDRICVMDNG 549
|
Length = 574 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 9/157 (5%)
Query: 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFARISG 944
VS R G A++G +G+GK+TL +LAG T G I N + RI
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 945 -YCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 1003
+ + N +P + I + LRL+ +++ E R+ I E + +V L P +
Sbjct: 92 IFQDPNTSLNPRLRI--GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYY--- 146
Query: 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040
L+ Q++R+ +A L+ P II DE + LD
Sbjct: 147 -PHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-06
Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 31/183 (16%)
Query: 874 QGVLE---DKLVLLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYITGN 926
+G+L+ D V++ +S RPG L+G SG+GK+T L+ ++ + G
Sbjct: 289 KGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GE 341
Query: 927 ITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL--------LFSAWLRL-SPEVDSE 977
I G P R ++ I F SL + LR+ P + +
Sbjct: 342 IWFDGQPLHN--LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAA 399
Query: 978 TRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1036
R+ + VME V L+P R P + S QR+R+ IA L+ PS+I +DEPTS
Sbjct: 400 QREQQVIAVMEEVGLDPETRHRY---P--AEFSGGQRQRIAIARALILKPSLIILDEPTS 454
Query: 1037 GLD 1039
LD
Sbjct: 455 SLD 457
|
Length = 529 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-06
Identities = 64/236 (27%), Positives = 101/236 (42%), Gaps = 34/236 (14%)
Query: 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 916
FD+V +S D QGV VS +PG A++G +GAGK+TL+++L
Sbjct: 336 EFDDVSFSYDN----SRQGV--------EDVSFEAKPGQTVAIVGPTGAGKSTLINLL-- 381
Query: 917 RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLF----SAWLRLSP 972
++ +G I I G I + + V ++ LF +R+
Sbjct: 382 QRVFDPQSGRILIDG--------TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR 433
Query: 973 E--VDSETRKMF-IDEVMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1028
D E R + + +E P ++VG G LS +R+RL IA L+ +P I
Sbjct: 434 PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERG-RQLSGGERQRLAIARALLKDPPI 492
Query: 1029 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+ +DE TS LD A V + + + GRT H+ S + A D + + G
Sbjct: 493 LILDEATSALDVETEAKVKAAL-DELMKGRTTFIIAHRLST-VRNA-DRILVFDNG 545
|
Length = 588 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 51/200 (25%), Positives = 71/200 (35%), Gaps = 62/200 (31%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
++ +S + G LLGP +GK+T+ + G P +G +T + VP R
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITV----LGVPVPAR 108
Query: 227 TAA------YISQHDNHIGEMTVRETLAFSARCQGVGTR-----YEMLTELARREKAAGI 275
+ Q DN E TVRE L R G+ TR L E AR E
Sbjct: 109 ARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK--- 165
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG 335
AD V D +SGG K+R+T
Sbjct: 166 ------------------------------------ADARVSD-----LSGGMKRRLTLA 184
Query: 336 EMMVGPALALFMDEISTGLD 355
++ L +DE +TGLD
Sbjct: 185 RALINDPQLLILDEPTTGLD 204
|
Length = 340 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-06
Identities = 71/254 (27%), Positives = 105/254 (41%), Gaps = 52/254 (20%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
ILK +S ++ G ++GP SGK+TL L G PT SG+V +G D+ ++
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDR-- 405
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI-KPDPDIDVYM 285
Q HIG + Q V EL A I + + D
Sbjct: 406 -----EQLGRHIGYLP-----------QDV--------ELFDGTIAENIARFGEEADPE- 440
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG-PALA 344
K I EA + + +L L DT +G+ +SGGQ++R+ + G P L
Sbjct: 441 KVI-----EAARLAGVHELILRLPQGYDTRIGEGG-ATLSGGQRQRIALARALYGDPFL- 493
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI-----SLLQPAPETYDLFDDIILLS 399
+ +DE ++ LDS + + GT V+ S L D I++L
Sbjct: 494 VVLDEPNSNLDSEGEAALAAAILA-AKARGGTVVVIAHRPSALASV-------DKILVLQ 545
Query: 400 DGQIVYQGPRELVL 413
DG+I GPRE VL
Sbjct: 546 DGRIAAFGPREEVL 559
|
Length = 580 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-06
Identities = 57/208 (27%), Positives = 96/208 (46%), Gaps = 19/208 (9%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 943
L+ +S PG AL+G SG+GK+TL++++ + +G I + G+ T A +
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQILLDGHDLADYTLASLR 405
Query: 944 GYCEQNDIHSPFVTIYESLLFS--AWLRLSPEVDSETRKMFIDE-VMELVELNPLR-QSL 999
Q + S V ++ + + A+ R +E + + V+ PL +
Sbjct: 406 ---RQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTP 462
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---T 1056
+G GV LS QR+RL IA L+ + I+ +DE TS LD + R V+ ++
Sbjct: 463 IGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDNESE----RLVQAALERLMQ 517
Query: 1057 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
GRT + H+ S E D + +M G
Sbjct: 518 GRTTLVIAHRLS--TIEKADRIVVMDDG 543
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 59/251 (23%), Positives = 101/251 (40%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T+L V ++ G L L+GP +GKTTLL A+ G L PT +GTV G D V
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDD----VEA 69
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELAR---REKAAGIKPDPDID 282
+A S+ + + T +L+F + V E+ R R +
Sbjct: 70 LSARAASRRVASVPQDT---SLSFEFDVRQV-------VEMGRTPHRSRFDTWTETDRAA 119
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
V +A+ G D + +SGG+++RV +
Sbjct: 120 V-ERAMERTGVAQFA--------------------DRPVTSLSGGERQRVLLARALAQAT 158
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE + LD + + + +R+ ++ G ++ + D+++LL+DG+
Sbjct: 159 PVLLLDEPTASLDINHQVRTLELVRR--LVDDGKTAVAAIHDLDLAARYCDELVLLADGR 216
Query: 403 IVYQGPRELVL 413
+ GP VL
Sbjct: 217 VRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-06
Identities = 69/276 (25%), Positives = 109/276 (39%), Gaps = 76/276 (27%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF---- 222
IL +S I G+ ++G +GK+T+L L D SG++T +G D+ +
Sbjct: 278 ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQS 334
Query: 223 -------VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI 275
VPQ T + T+A++ + E + A +AA
Sbjct: 335 LRRAIGIVPQDTVLFND-------------TIAYNIKYGRPDATAEEVGAAA---EAA-- 376
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG--ISGGQKKRVT 333
Q + I L DT VG+ RG +SGG+K+RV
Sbjct: 377 -----------------QIHDFIQS-------LPEGYDTGVGE---RGLKLSGGEKQRVA 409
Query: 334 TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETY 389
++ L +DE ++ LD+ T I LR+ + T VI S + A
Sbjct: 410 IARTILKNPPILILDEATSALDTHTEQAIQAALRE-VSAGRTTLVIAHRLSTIIDA---- 464
Query: 390 DLFDDIILLSDGQIVYQGPRELVLE---FFASMGFR 422
D+II+L +G+IV +G E +L +A M R
Sbjct: 465 ---DEIIVLDNGRIVERGTHEELLAAGGLYAEMWRR 497
|
Length = 497 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 55/234 (23%), Positives = 91/234 (38%), Gaps = 58/234 (24%)
Query: 861 VVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 920
V Y+ D+P +L VS + G ++G +GAGK+TL +LA +
Sbjct: 14 VRYAPDLPP-------------VLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFL 58
Query: 921 GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL--------LFSAWLRLSP 972
G I I G + P + SL LFS +R +
Sbjct: 59 EAEEGKIEIDG----------------IDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL 102
Query: 973 EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1032
+ E I + + E G LS QR+ L +A L+ P ++ +D
Sbjct: 103 DPFDEYSDEEIYGALRVSE------------GGLNLSQGQRQLLCLARALLKRPRVLVLD 150
Query: 1033 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH--QPSIDIFEAFDELFLMKRG 1084
E T+ +D A++ +T+R T T++ H + ID +D++ +M G
Sbjct: 151 EATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIID----YDKILVMDAG 199
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 63/277 (22%), Positives = 115/277 (41%), Gaps = 44/277 (15%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLL---LALAGKLDPTLKVSGTVTYNGHDMDE 221
LT+L ++ + G L+GP SGK+T+L + L + ++V G Y+
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYH------ 66
Query: 222 FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
+P R + + H+ +M +G ++ + + P
Sbjct: 67 -MPGRNGPLVPADEKHLRQMR-----------NKIGMVFQSFNLFPHKTVLDNVTEAP-- 112
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE-MMVG 340
V + +A E + L ++GL AD D M +SGGQ++RV + +
Sbjct: 113 -VLVLGMARAEAEKRAME--LLDMVGL---ADKA--DHMPAQLSGGQQQRVAIARALAMR 164
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
P + LF DE+++ LD +++N +R+ + T ++ + + D +
Sbjct: 165 PKVMLF-DEVTSALDPELVGEVLNVIRRLASEHDLTMLL-VTHEMGFAREFADRVCFFDK 222
Query: 401 GQIVYQG-PRELVLEFFASMGFRCPKRKGVADFLQEV 436
G+IV QG P E+ FR PK + +FL +V
Sbjct: 223 GRIVEQGKPDEI---------FRQPKEERTREFLSKV 250
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (120), Expect = 2e-06
Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 17/191 (8%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAG-RKTGGYITGNITISGYPK 934
+L+ VS F +T+LMG +G+GKTT + D ++G R +G + G +I Y
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 935 KQETFARISGYCEQNDIHSPF-VTIYESLLFSAWL-RLSPEVDSETRKMFIDEVMELVEL 992
E F R G Q +PF ++I +++L +L P E R + + E+
Sbjct: 96 VLE-FRRRVGMLFQRP--NPFPMSIMDNVLAGVRAHKLVPR--KEFRGVAQARLTEVGLW 150
Query: 993 NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052
+ ++ L P LS Q++ L +A L NP ++ +DEPTS LD + +R+
Sbjct: 151 DAVKDRLSDSP--FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRS 208
Query: 1053 TVDTGRTVVCT 1063
D ++ T
Sbjct: 209 LADRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-06
Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 29/183 (15%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 943
L+ VS R G + +L G +GAGK+TLM VL+G G G I G + + I
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ---ASNIR 77
Query: 944 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD--------SE-TRKMFIDEVMELVELNP 994
E+ I I++ L L E+ +E T +D +
Sbjct: 78 D-TERAGI----AIIHQELA------LVKELSVLENIFLGNEITPGGIMDYDAMYLRAQK 126
Query: 995 LRQSL-----VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1049
L L P V L Q++ + IA L ++ +DEPT+ L A+++
Sbjct: 127 LLAQLKLDINPATP-VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDI 185
Query: 1050 VRN 1052
+R+
Sbjct: 186 IRD 188
|
Length = 506 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 49/210 (23%), Positives = 83/210 (39%), Gaps = 52/210 (24%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP--KK 935
E + +L +S + G AL+G SG+GK+TL+ +L G G IT+ G P
Sbjct: 12 EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ--QGEITLDGVPVSDL 69
Query: 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 995
++ + + Q P+ LF LR
Sbjct: 70 EKALSSLISVLNQ----RPY-------LFDTTLR-------------------------- 92
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055
+ +G S +R+RL +A L+ + I+ +DEPT GLD ++ + V
Sbjct: 93 --NNLGRR----FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE-VL 145
Query: 1056 TGRTVV-CTIHQPSIDIFEAFDELFLMKRG 1084
+T++ T H I E D++ ++ G
Sbjct: 146 KDKTLIWITHHLTGI---EHMDKILFLENG 172
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 14/175 (8%)
Query: 899 LMGVSGAGKTTLMDVL----AGRKTGGYITGN-ITISGYPKKQETFA--RISGYCEQNDI 951
L+G SGAGK++L+ VL R I GN S P + R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN 92
Query: 952 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011
P +T+ E+L+ A R+ + +L++ L+ P LS
Sbjct: 93 LWPHLTVQENLI-EAPCRVLGLSKDQALA----RAEKLLKRLRLKPYADRYP--LHLSGG 145
Query: 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1066
Q++R+ IA L+ P ++ DEPT+ LD A ++ ++ +TG T V H+
Sbjct: 146 QQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 3e-06
Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 26/154 (16%)
Query: 896 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS-- 953
LT L+G SG GKTT++ ++AG +T +G I + G + + E +++
Sbjct: 43 LT-LLGPSGCGKTTVLRLIAGFETPD--SGRIMLDG-----QDITHVPA--ENRHVNTVF 92
Query: 954 ------PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 1007
P +T++E++ F ++ +P + R M E + +V+L Q
Sbjct: 93 QSYALFPHMTVFENVAFGLRMQKTPAAEITPRVM---EALRMVQLEEFAQR-----KPHQ 144
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
LS Q++R+ IA +V P ++ +DE S LD +
Sbjct: 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 70/248 (28%), Positives = 101/248 (40%), Gaps = 66/248 (26%)
Query: 177 PGRLTLLLGPPSSGKTTLLLALAGKLDP---TLKVSGTVTYNGHDMDEFVPQRTAAYISQ 233
G L LLGP +GKTTLL A+ G + P T+KV+G G +VPQR
Sbjct: 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQR------- 57
Query: 234 H----DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIA 289
H D I +V T+ S R +G RR A
Sbjct: 58 HEFAWDFPI---SVAHTV-MSGRTGHIG--------WLRRPCVADFAA------------ 93
Query: 290 TEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA----- 344
L+ +GL AD VG+ +SGGQ++RV +V ALA
Sbjct: 94 ---------VRDALRRVGLTELADRPVGE-----LSGGQRQRV-----LVARALATRPSV 134
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE TGLD T + + +GTA++ + D ++LL +G+++
Sbjct: 135 LLLDEPFTGLDMPTQELLTELFIE--LAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVI 191
Query: 405 YQG-PREL 411
G P++L
Sbjct: 192 ADGTPQQL 199
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 3e-06
Identities = 56/247 (22%), Positives = 99/247 (40%), Gaps = 53/247 (21%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-- 225
L ++ ++PG L+GP +GK+TL L DP SG + +G D+ + P
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPAEL 412
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP-DIDVY 284
R + D + +V E + + +PD D +V
Sbjct: 413 RARMALVPQDPVLFAASVMENIRYG-------------------------RPDATDEEVE 447
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
A A E + L DT +G+ + +SGGQ++R+ ++ A
Sbjct: 448 AAARAAHAHEF---------ISALPEGYDTYLGERGVT-LSGGQRQRIAIARAILKDAPI 497
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETYDLFDDIILLSD 400
L +DE ++ LD+ + Q+V + + T +I + + A D I+++
Sbjct: 498 LLLDEATSALDAESE-QLVQQALETLMKGRTTLIIAHRLATVLKA-------DRIVVMDQ 549
Query: 401 GQIVYQG 407
G+IV QG
Sbjct: 550 GRIVAQG 556
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 54/215 (25%), Positives = 84/215 (39%), Gaps = 40/215 (18%)
Query: 877 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG----- 931
+EDK +L G++ RPG + A+MG +G+GK+TL LAGR+ G + G
Sbjct: 11 VEDKAIL-RGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLE 69
Query: 932 ----------------YPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD 975
YP I G Q + + + R +D
Sbjct: 70 LSPEDRAGEGIFMAFQYP------VEIPGVSNQFFLQTALNAVRS-------YRGQEPLD 116
Query: 976 SETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1034
+ ++E + L+++ L V + G S ++KR I V P + +DE
Sbjct: 117 RFDFQDLMEEKIALLKMPEDLLTRSVNV----GFSGGEKKRNDILQMAVLEPELCILDES 172
Query: 1035 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1069
SGLD A IV V + D R+ + H I
Sbjct: 173 DSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI 207
|
Length = 248 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 3e-06
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT 924
L+GVS + R G + AL+G +GAGK+TLM +L+G + G I
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 3e-06
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM----DEFVPQRTAAY 230
+ G L + GP +GKT+LL LAG P +G V + G + DE+ + Y
Sbjct: 24 LNAGELVQIEGPNGAGKTSLLRILAGLARPD---AGEVLWQGEPIRRQRDEY--HQDLLY 78
Query: 231 ISQHDNHI-GEMTVRETLAFSARCQGVGTRYEMLTELAR 268
+ H I E+T E L F R G G + LA+
Sbjct: 79 LG-HQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQ 116
|
Length = 204 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 12/102 (11%)
Query: 987 MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046
+E VE++ R + LP + S ++RL IA LV +P ++FMDEPT GLD A +
Sbjct: 135 LERVEIDAAR--IDDLP--TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARL 190
Query: 1047 MRTVRNTV-DTGRTVVCTIHQPSIDIFEA---FDELFLMKRG 1084
+ +R V + G VV H D+ A L +MK+G
Sbjct: 191 LDLLRGLVRELGLAVVIVTH----DLAVARLLAHRLLVMKQG 228
|
Length = 258 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-06
Identities = 60/224 (26%), Positives = 100/224 (44%), Gaps = 45/224 (20%)
Query: 865 VDMPEEMKVQGVLEDKLVLLNGVSG-------AFRPGVLTALMGVSGAGKTTLMDVLAGR 917
V++PEE LE+++V GV+G RPG + ++G +G GK+T + +LAG
Sbjct: 70 VNLPEE------LEEEVVHRYGVNGFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGE 123
Query: 918 KTGGYITGNI-TISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSA----WLRLSP 972
+ N+ P E R G ++ + F +YE L + ++ L P
Sbjct: 124 -----LKPNLGRYEDPPSWDEVIKRFRG----TELQNYFKKLYEGELRAVHKPQYVDLIP 174
Query: 973 E-VDSETRKM--------FIDEVMELVELNPL--RQSLVGLPGVSGLSTEQRKRLTIAVE 1021
+ V + ++ DEV+E + L + R VS LS + +R+ IA
Sbjct: 175 KVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRD-------VSELSGGELQRVAIAAA 227
Query: 1022 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1065
L+ + + F DEP+S LD R R +R + G+ V+ H
Sbjct: 228 LLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (118), Expect = 3e-06
Identities = 54/198 (27%), Positives = 89/198 (44%), Gaps = 32/198 (16%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 936
LN ++ +TAL+G SG GK+T + D++ G K I GN+ G
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK----IEGNVIYEGKNIYS 78
Query: 937 ETF-----ARISGYCEQNDIHSPFV-TIYESLLFSAWLRLSPEVDSETRKMFIDEVME-- 988
F R G Q +PF+ +IY+++ + P++ K +DE++E
Sbjct: 79 NNFDILELRRKIGMVFQTP--NPFLMSIYDNISYG------PKIHGTKDKKKLDEIVEQS 130
Query: 989 LVE---LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
L + N ++ L LS Q++RL IA L P++I MDEPTS LD +
Sbjct: 131 LKKSALWNEVKDKLN--TNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGK 188
Query: 1046 VMRTVRNTVDTGRTVVCT 1063
+ + N ++ ++ T
Sbjct: 189 IEELIINLKESYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 40/191 (20%), Positives = 80/191 (41%), Gaps = 26/191 (13%)
Query: 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI 951
R G + L+G +G GK+T + +LAG+ + N+ G + I +++
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGK-----LKPNL---GKFDDPPDWDEILDEFRGSEL 75
Query: 952 HSPFVTIYESLLFSA----WLRLSPE-VDSETRKM--------FIDEVMELVELNPLRQS 998
+ F + E + ++ L P+ V + ++ +DE+++ +EL +
Sbjct: 76 QNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDR 135
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1058
+ LS + +R+ IA L + F DEP+S LD + R +R +
Sbjct: 136 -----NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDN 190
Query: 1059 TVVCTIHQPSI 1069
V+ H ++
Sbjct: 191 YVLVVEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 4e-06
Identities = 59/251 (23%), Positives = 97/251 (38%), Gaps = 58/251 (23%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----- 221
+LK ++ +T L+G GK+TL + L+G L P G V + G +D
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGL 72
Query: 222 -FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+ Q+ A + I + +AFS R GV E+ RR
Sbjct: 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPE-----AEITRR----------- 116
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
+D + + + + I+ +S GQKKRV +V
Sbjct: 117 VDEALTLVDAQH-----------------------FRHQPIQCLSHGQKKRVAIAGALVL 153
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLR----QNIHINSGTAVISLLQPAPETYDLFDDII 396
A L +DE + GLD + Q++ +R Q H+ + I L+ Y++ D +
Sbjct: 154 QARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLI------YEISDAVY 207
Query: 397 LLSDGQIVYQG 407
+L GQI+ G
Sbjct: 208 VLRQGQILTHG 218
|
Length = 271 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 4e-06
Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 35/198 (17%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP-KKQ-E 937
+L +G+S G L + G +GAGKT+L+ +LAG R G + G P ++Q +
Sbjct: 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQ----GEPIRRQRD 70
Query: 938 TFARISGYC-EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
+ + Y Q I +T E+L F RL D E L
Sbjct: 71 EYHQDLLYLGHQPGI-KTELTALENLRFYQ--RLHGPGDDEA----------------LW 111
Query: 997 QSL--VGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1049
++L VGL G V LS Q++R+ +A + + +DEP + +D + A +
Sbjct: 112 EALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEAL 171
Query: 1050 VRNTVDTGRTVVCTIHQP 1067
+ + G V+ T HQ
Sbjct: 172 LAQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 62/218 (28%), Positives = 95/218 (43%), Gaps = 37/218 (16%)
Query: 895 VLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNITISG---YPKKQETFA--RISGYC 946
+ ALMG SG GK+TL+ + L + G + + G Y + R G
Sbjct: 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMV 90
Query: 947 EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL--------NPLRQS 998
Q P +TIY+++ ++L+ V S+ E+ E VE + ++
Sbjct: 91 FQYPNPFPHLTIYDNVAIG--VKLNGLVKSK------KELDERVEWALKKAALWDEVKDR 142
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1058
L P S LS QR+RL IA L P I+ MDEPT+ +D A + + +
Sbjct: 143 LNDYP--SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE-LKKEY 199
Query: 1059 TVVCTIHQPS----IDIFEAFDELFLMKRGGQEIYVGP 1092
T+V H P+ + + AF L+L G+ I VGP
Sbjct: 200 TIVLVTHSPAQAARVSDYVAF--LYL----GKLIEVGP 231
|
Length = 253 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 4e-06
Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 26/182 (14%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGNITISG---YPKKQE 937
L+G+S F LTAL+G SG GK+T + L ITG I G Y K +
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 938 TFA--RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 995
+ G Q PF ++Y+++ + L+++ D E ID+ +E L
Sbjct: 80 LVELRKEVGMVFQQPTPFPF-SVYDNVAYG--LKIAGVKDKE----LIDQRVE----ESL 128
Query: 996 RQSLVGLP-------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048
+Q+ + S Q++R+ IA L P ++ +DEPTS LD +++ +
Sbjct: 129 KQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEE 188
Query: 1049 TV 1050
T+
Sbjct: 189 TL 190
|
Length = 251 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 5e-06
Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 43/185 (23%)
Query: 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ- 936
L+ +N V+ R + +L+G +GAGKTT+ + L G + TGG I I G P Q
Sbjct: 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI 77
Query: 937 ------ETFARISGYCEQNDIHSPFVTIYESLL----------FSAWLRLSP-----EVD 975
TF + + E +T+ E+LL + L +P E +
Sbjct: 78 ARMGVVRTFQHVRLFRE--------MTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESE 129
Query: 976 SETRKMFIDEVMELVEL-NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1034
+ R E + L+E N RQ+ L+ Q++RL IA +V P I+ +DEP
Sbjct: 130 ALDRAATWLERVGLLEHAN--RQA-------GNLAYGQQRRLEIARCMVTQPEILMLDEP 180
Query: 1035 TSGLD 1039
+GL+
Sbjct: 181 AAGLN 185
|
Length = 255 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 5e-06
Identities = 50/172 (29%), Positives = 73/172 (42%), Gaps = 22/172 (12%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 936
D L ++G+S R G L+G SG+GK+TL L G I G +K+
Sbjct: 298 DHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKE 357
Query: 937 ETFARISGYCEQNDIHSPFVTIYESL--------LFSAWLRL-SPEVDSETRKMFIDEVM 987
R + F Y SL + LR+ P++ + R + E +
Sbjct: 358 MRPLR-------RRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEAL 410
Query: 988 ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
E V L+P + P S QR+R+ IA L+ P +I +DEPTS LD
Sbjct: 411 EEVGLDP--ATRNRYP--HEFSGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 5e-06
Identities = 62/222 (27%), Positives = 99/222 (44%), Gaps = 48/222 (21%)
Query: 894 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI-- 951
G + L+G SG GKTT++ ++AG + G I I G + T I +Q DI
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG---EDVTHRSI----QQRDICM 82
Query: 952 --HS----PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 1005
S P +++ E++ + L++ V E RK + E +ELV+L V
Sbjct: 83 VFQSYALFPHMSLGENVGYG--LKML-GVPKEERKQRVKEALELVDLAGFEDRYV----- 134
Query: 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DTGRTV 1060
+S Q++R+ +A L+ P ++ DEP S LDA + R++R + T
Sbjct: 135 DQISGGQQQRVALARALILKPKVLLFDEPLSNLDAN----LRRSMREKIRELQQQFNITS 190
Query: 1061 VCTIHQPSIDIFEAF---DELFLMKRG-------GQEIYVGP 1092
+ H S EAF D + +M +G QE+Y P
Sbjct: 191 LYVTHDQS----EAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228
|
Length = 351 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 5e-06
Identities = 54/225 (24%), Positives = 96/225 (42%), Gaps = 27/225 (12%)
Query: 850 PFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTT 909
P EPH +V+ + V+ ++ VS + R G + + G+ GAG+T
Sbjct: 247 PHEPH--EIGDVILEA---RNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTE 301
Query: 910 LMDVLAGRKTGGYITGNITISGYP-----KKQETFARISGYCEQNDIHS--PFVTIYESL 962
L+ L G G + GN+ I+G P Q A I+ E H P + + +++
Sbjct: 302 LVQALFGAYPGKF-EGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNI 360
Query: 963 LFSAWLRLSPEVDSETRKMFIDEVMEL------VELNPLRQSLVGLPGVSGLSTEQRKRL 1016
S + S KM ID EL ++ ++ + LP + LS +++
Sbjct: 361 TLSV-------LKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP-IGRLSGGNQQKA 412
Query: 1017 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1061
+A L+ NP ++ +DEPT G+D A + + + G ++
Sbjct: 413 VLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 5e-06
Identities = 52/186 (27%), Positives = 80/186 (43%), Gaps = 42/186 (22%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YP 933
L +S +TA +G SG GK+TL+ D++ + I G I + G Y
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR----IEGEIRLDGQNIYD 96
Query: 934 KKQE--TFARISGYCEQNDIHSPF-VTIYESLLFSAWLR---------LSPEVDSETRKM 981
KK + R G Q +PF +IYE++++ LR L V+ R
Sbjct: 97 KKVDVAELRRRVGMVFQRP--NPFPKSIYENVVYG--LRLQGINNRRVLDEAVERSLRGA 152
Query: 982 FI-DEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040
+ DEV + + N GLS Q++RL IA + P ++ +DEPTS LD
Sbjct: 153 ALWDEVKDRLHENAF-----------GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDP 201
Query: 1041 RAAAIV 1046
+ +
Sbjct: 202 ISTLKI 207
|
Length = 272 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 12/191 (6%)
Query: 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNITISGYPKKQ 936
+L+ + G + ++G SG+GK+TL+ + L +G I + ++ PK
Sbjct: 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND-PKVD 71
Query: 937 ETFARI-SGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 995
E R +G Q P +T E+++F LR+ E K EL+ L
Sbjct: 72 ERLIRQEAGMVFQQFYLFPHLTALENVMFGP-LRVRGASKEEAEKQ----ARELLAKVGL 126
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055
+ P S LS Q++R+ IA L P ++ DEPTS LD V++ +++ +
Sbjct: 127 AERAHHYP--SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE 184
Query: 1056 TGRTVVCTIHQ 1066
G T+V H+
Sbjct: 185 EGMTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 5e-06
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 40/166 (24%)
Query: 896 LTALMGVSGAGKTT-------LMDVLAGRKTGG---YITGNITISGYPKKQETFARISGY 945
+TA++G SG GK+T +++++ KT G Y NI Y +E +
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV-EELRTNVGMV 110
Query: 946 CEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP- 1003
++ + PF +IY+++ + P++ K +DE++E +SL G
Sbjct: 111 FQKPN---PFPKSIYDNVTYG------PKIHGIKDKKTLDEIVE--------KSLRGAAI 153
Query: 1004 ----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
GLS Q++RL IA L P +I MDEPTS LD
Sbjct: 154 WDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 6e-06
Identities = 62/282 (21%), Positives = 107/282 (37%), Gaps = 70/282 (24%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF----- 222
+ DVS ++ G + +++G SGK+TLL + ++PT SG V +G D+
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKEL 96
Query: 223 --VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+ ++ + + Q + TV E +AF QGV R E+A
Sbjct: 97 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVP-------RAEREERA-------- 141
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
+A+ G E + +SGG ++RV +
Sbjct: 142 ----AEALELVGLEGW--------------------EHKYPDELSGGMQQRVG-----LA 172
Query: 341 PALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395
ALA L MDE + LD ++ + L + + ++ + E L D I
Sbjct: 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLR-LQAELQKTIVFITHDLDEALRLGDRI 231
Query: 396 ILLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFLQEV 436
++ DG++V G P E++ P V +F + V
Sbjct: 232 AIMKDGRLVQVGTPEEILTN---------PANDYVREFFRGV 264
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 6e-06
Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 17/206 (8%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L ++ + G ++G +G+GK+TL L G R G + + +G K + +
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 942 ISGYCEQNDIHSPFV--TIYESLLFSAW-LRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
+ G QN + FV T+ E L F L L P E RK +D + + L R
Sbjct: 78 LVGIVFQNP-ETQFVGRTVEEDLAFGPENLCLPP---IEIRKR-VDRALAEIGLEKYRHR 132
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1058
LS Q + + +A L P + DE TS LD + V+ ++ + G+
Sbjct: 133 -----SPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK 187
Query: 1059 TVVCTIHQPSIDIFEAFDELFLMKRG 1084
T+V H +++ D + +M RG
Sbjct: 188 TIVYITH--NLEELHDADRIIVMDRG 211
|
Length = 274 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 6e-06
Identities = 66/258 (25%), Positives = 110/258 (42%), Gaps = 48/258 (18%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKV-SGTVTYNGHDMDEFVPQ 225
ILK ++ I G + ++GP SGK+TL +AG P K+ G + + G + + P+
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH--PAYKILEGDILFKGESILDLEPE 79
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELA--RREKAAGIKPDPDIDV 283
A H+G LAF + G LA + K G P+ D
Sbjct: 80 ERA--------HLGIF-----LAFQYPIEIPGVSNADFLRLAYNSKRKFQG-LPELDPLE 125
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM-MVGPA 342
+++ I + LK++G+D + + + G SGG+KKR +M ++
Sbjct: 126 FLEIINEK-----------LKLVGMD---PSFLSRNVNEGFSGGEKKRNEILQMALLDSE 171
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------SLLQPAPETYDLFDDII 396
LA+ +DE +GLD I + N + S ++I LL Y D +
Sbjct: 172 LAI-LDETDSGLDIDALKIIAEGI--NKLMTSENSIILITHYQRLLD-----YIKPDYVH 223
Query: 397 LLSDGQIVYQGPRELVLE 414
++ +G+I+ G EL E
Sbjct: 224 VMQNGKIIKTGDAELAKE 241
|
Length = 252 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 7e-06
Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 13/162 (8%)
Query: 887 VSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRKTGGYITGNITISG---YPKKQE--T 938
VS F +TA++G SG GK+T+ ++ + +TG I + Y + + +
Sbjct: 23 VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82
Query: 939 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-NPLRQ 997
R G Q P ++IY++++ A +L+ V+ ++ ++ V L + ++
Sbjct: 83 IRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADEIVESSLKRVALWDEVKD 140
Query: 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
L LS Q++RL IA + P +I MDEP S LD
Sbjct: 141 RLKS--NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 8e-06
Identities = 53/247 (21%), Positives = 96/247 (38%), Gaps = 54/247 (21%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
+LK + +K G + +++GP SGK+TLL + +P SGT+ +G + +
Sbjct: 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKK 69
Query: 225 Q-----RTAAYISQHDNHIGEMTVRE--TLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+ + Q N +TV E TLA ++ KA
Sbjct: 70 NINELRQKVGMVFQQFNLFPHLTVLENITLA--------------PIKVKGMSKA----- 110
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE- 336
EA L+ +GL A D +SGGQ++RV
Sbjct: 111 ----------------EAEERALELLEKVGLADKA-----DAYPAQLSGGQQQRVAIARA 149
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396
+ + P + LF DE ++ LD ++++ ++ G ++ + ++ D +I
Sbjct: 150 LAMNPKVMLF-DEPTSALDPELVGEVLDVMKDLAE--EGMTMVVVTHEMGFAREVADRVI 206
Query: 397 LLSDGQI 403
+ DG+I
Sbjct: 207 FMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 8e-06
Identities = 54/213 (25%), Positives = 89/213 (41%), Gaps = 17/213 (7%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK----QETF 939
L+G+ RPG L G +GAGK+TLM +L+G G G I SG P K ++T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 940 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ-S 998
Q P +++ E++ L E+ +M + M L N LR+
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIF------LGNEITLPGGRMAYNA-MYLRAKNLLRELQ 129
Query: 999 LVGLP---GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055
L V Q++ + IA L ++ +DEP+S L + I++ +R+
Sbjct: 130 LDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL-- 187
Query: 1056 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088
V C ++ +A + + R GQ +
Sbjct: 188 KAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 8e-06
Identities = 56/215 (26%), Positives = 90/215 (41%), Gaps = 27/215 (12%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGNITISGYPKKQ-- 936
V +N VS R G + +MG+SG+GK+TL+ + T G + I+ +K+
Sbjct: 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELR 97
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
E + Q+ P T+ E++ F ++ P + E R E +ELV L
Sbjct: 98 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAA---EALELVGLEGWE 154
Query: 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----ARAAAIVMRTVRN 1052
LS ++R+ +A L +P I+ MDE S LD ++R
Sbjct: 155 HKYPD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE 209
Query: 1053 TVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1084
+T+V H D+ EA D + +MK G
Sbjct: 210 ---LQKTIVFITH----DLDEALRLGDRIAIMKDG 237
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 9e-06
Identities = 64/256 (25%), Positives = 105/256 (41%), Gaps = 58/256 (22%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF----V 223
LKDVS + G ++G SGK+TL L G L P +GT+T G + E V
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDV 79
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
++ DN TV++ +AF GV R EM+ R A ++ V
Sbjct: 80 RRQVGMVFQNPDNQFVGATVQDDVAFGLENIGV-PREEMV----ERVDQA-LR-----QV 128
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
M+ E R +SGGQK+RV ++
Sbjct: 129 GMEDFLNR---------------------------EPHR-LSGGQKQRVAIAGVLALQPD 160
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-----FDDIILL 398
+ +DE ++ LD +++ +RQ + G V+S+ T+DL D +I++
Sbjct: 161 IIILDEATSMLDPRGRREVLETVRQ-LKEQKGITVLSI------THDLDEAAQADRVIVM 213
Query: 399 SDGQIVYQGPRELVLE 414
+ G+I+ +G E + +
Sbjct: 214 NKGEILEEGTPEEIFK 229
|
Length = 279 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 9e-06
Identities = 59/229 (25%), Positives = 96/229 (41%), Gaps = 38/229 (16%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKK 935
+ L VS G A++G +G+GK+T+ +L G + G I I G
Sbjct: 19 NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSG----EIKIDGITIS 74
Query: 936 QETFARIS---GYCEQN-DIHSPFV--TIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL 989
+E I G QN D + F+ T+ + + F + V + K ID++ +
Sbjct: 75 KENLKEIRKKIGIIFQNPD--NQFIGATVEDDIAFGLENKK---VPPKKMKDIIDDLAKK 129
Query: 990 VELNPL--RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV- 1046
V + ++ LS Q++R+ IA L NP II DE TS LD + +
Sbjct: 130 VGMEDYLDKEPQ-------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIK 182
Query: 1047 --MRTVRNTVDTGRTVVCTIHQPSIDIFEAF--DELFLMKRGGQEIYVG 1091
M +R T +T++ H D+ EA D++ + G+ I G
Sbjct: 183 KIMVDLRKTRK--KTLISITH----DMDEAILADKVIVFS-EGKLIAQG 224
|
Length = 271 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 9e-06
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1066
LS Q++R+ IA L P ++ DEPTS LD V++ +++ + GRT+V H+
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 9e-06
Identities = 42/165 (25%), Positives = 60/165 (36%), Gaps = 59/165 (35%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
++GVS + + G L+G SG GK+TL ++ G T G I G
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSG----EILFEG---------- 74
Query: 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL------ 995
DI ++ E R+ + E++E V L
Sbjct: 75 -------KDIT--------------------KLSKEERRERVLELLEKVGLPEEFLYRYP 107
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040
+ LS QR+R+ IA L NP +I DEP S LD
Sbjct: 108 HE----------LSGGQRQRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 45/217 (20%), Positives = 71/217 (32%), Gaps = 52/217 (23%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
+ +S + G + GP SGKTTLL LAG P +G V NG +D
Sbjct: 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRD 69
Query: 225 --QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R Y+ ++V E L F + ++ LAR
Sbjct: 70 SIARGLLYLGHAPGIKTTLSVLENLRFWHA---DHSDEQVEEALAR-------------- 112
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+GL D + +S GQ++RV +++
Sbjct: 113 -----------------------VGL-----NGFEDRPVAQLSAGQQRRVALARLLLSGR 144
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
+DE +T LD + + + H G V+
Sbjct: 145 PLWILDEPTTALDKAGVARFAEAMAG--HCARGGMVV 179
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-05
Identities = 60/277 (21%), Positives = 109/277 (39%), Gaps = 60/277 (21%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF----- 222
+ D S ++ G + +++G SGK+TL+ L ++PT G + +G D+ +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAEL 100
Query: 223 --VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+ ++ + + Q + TV E +AF QGV + R E+A
Sbjct: 101 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVP-------KAEREERA-------- 145
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
++A+ G E Y D+ +SGG ++RV +
Sbjct: 146 ----LEALELVGLE-----GY---------------ADKYPNELSGGMQQRVGLARALAN 181
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
L MDE + LD ++ + L + + ++ + E + D I ++ D
Sbjct: 182 DPDILLMDEAFSALDPLIRTEMQDELLE-LQAKLKKTIVFITHDLDEALRIGDRIAIMKD 240
Query: 401 GQIVYQG-PRELVLEFFASMGFRCPKRKGVADFLQEV 436
G+IV G P E++L P V DF++ V
Sbjct: 241 GEIVQVGTPEEILLN---------PANDYVRDFVRNV 268
|
Length = 386 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 1e-05
Identities = 66/266 (24%), Positives = 104/266 (39%), Gaps = 82/266 (30%)
Query: 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF 222
+ +LK +S IK G LLG GK+TLL L DP G + NG + ++
Sbjct: 351 QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADY 407
Query: 223 -----------VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREK 271
V QR H+ T+R+ L LA
Sbjct: 408 SEAALRQAISVVSQRV---------HLFSATLRDNLL-----------------LA---- 437
Query: 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-----GLDVCADTMVGDEMIRGISG 326
P+ A++ V+ L+ L GL + +G E R +SG
Sbjct: 438 ----APN----------ASDEALIEVLQQVGLEKLLEDDKGL----NAWLG-EGGRQLSG 478
Query: 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 386
G+++R+ ++ A L +DE + GLD+ T QI+ L + H + T ++
Sbjct: 479 GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAE--HAQNKTVLMI------ 530
Query: 387 ETYDL-----FDDIILLSDGQIVYQG 407
T+ L FD I ++ +GQI+ QG
Sbjct: 531 -THRLTGLEQFDRICVMDNGQIIEQG 555
|
Length = 574 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 68/266 (25%), Positives = 115/266 (43%), Gaps = 58/266 (21%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM-DEFVP 224
T++ +++ IK G + LLGP GKTT+L +AG PT G + +G D+ +
Sbjct: 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQ 76
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
QR + Q M++ E + + + GV E +R K A
Sbjct: 77 QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPK-----EERKQRVKEA----------- 120
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV-GPAL 343
L+++ L D V D+ ISGGQ++RV ++ P +
Sbjct: 121 ------------------LELVDLAGFEDRYV-DQ----ISGGQQQRVALARALILKPKV 157
Query: 344 ALFMDEISTGLDSS---TTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
LF DE + LD++ + + + L+Q +I S + + E + + D +I+++
Sbjct: 158 LLF-DEPLSNLDANLRRSMREKIRELQQQFNITS----LYVTHDQSEAFAVSDTVIVMNK 212
Query: 401 GQIVYQG-PRELVL----EFFAS-MG 420
G+I+ G P+EL F AS MG
Sbjct: 213 GKIMQIGSPQELYRQPASRFMASFMG 238
|
Length = 351 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 55/259 (21%), Positives = 97/259 (37%), Gaps = 68/259 (26%)
Query: 171 VSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTA-- 228
+S ++ G + L+GP +GK+TLL +AG L SG++ + G ++ + A
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAG----LLPGSGSIQFAGQPLEAWSAAELARH 70
Query: 229 -AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKA 287
AY+SQ M V ++ LT ++
Sbjct: 71 RAYLSQQQTPPFAMPV----------------FQYLT------------------LHQPD 96
Query: 288 IATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI---SGG--QKKRVTTGEMMVGPA 342
A+ + +V + D++ R + SGG Q+ R+ + V P
Sbjct: 97 KTRTEAVASALN---------EVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPD 147
Query: 343 L-----ALFMDEISTGLD---SSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394
+ L +DE LD + ++++ L Q G AV+ T D
Sbjct: 148 INPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-----QGIAVVMSSHDLNHTLRHADR 202
Query: 395 IILLSDGQIVYQGPRELVL 413
+ LL G+++ G R+ VL
Sbjct: 203 VWLLKQGKLLASGRRDEVL 221
|
Length = 248 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 57/206 (27%), Positives = 87/206 (42%), Gaps = 26/206 (12%)
Query: 871 MKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS 930
M++ V L +S R G + L+G +GAGK+TL+ +AG G +G+I +
Sbjct: 1 MQLNDVAVSTR--LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFA 55
Query: 931 GYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 987
G P + AR Y Q + +++ L L + +E ++EV
Sbjct: 56 GQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVA 111
Query: 988 ELVELNPLRQSLVGLPGVSGLS-TE-QRKRLTIAVELVANPSI------IFMDEPTSGLD 1039
E + L +G V+ LS E QR RL AV L P I + +DEP + LD
Sbjct: 112 EALGL----DDKLGRS-VNQLSGGEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLD 165
Query: 1040 ARAAAIVMRTVRNTVDTGRTVVCTIH 1065
A + R + G VV + H
Sbjct: 166 VAQQAALDRLLSELCQQGIAVVMSSH 191
|
Length = 248 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-05
Identities = 58/227 (25%), Positives = 99/227 (43%), Gaps = 38/227 (16%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L G++ PG + AL+G SG+GK+T+ +L + TGG + + G P Q
Sbjct: 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG----QVLLDGVPLVQ----- 547
Query: 942 ISGYCEQNDIHSPFVTI-YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 1000
+ + +H + E +LFS +R + +E+M + ++
Sbjct: 548 ----YDHHYLHRQVALVGQEPVLFSGSVR--ENIAYGLTDTPDEEIMAAAKAANAHDFIM 601
Query: 1001 GLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
P G G LS Q++R+ IA LV P ++ +DE TS LDA + ++
Sbjct: 602 EFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE----CEQLLQ 657
Query: 1052 NTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHS 1097
+ RTV+ H+ S E D++ ++K+G V +G H
Sbjct: 658 ESRSRASRTVLLIAHRLS--TVERADQILVLKKGS----VVEMGTHK 698
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 67/267 (25%), Positives = 114/267 (42%), Gaps = 50/267 (18%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM-DEFVP-- 224
L +V+ I+ G L+G SGK+TL+ L G L PT SG + +G D+ D+ V
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLS 79
Query: 225 --QRTAAYISQHDNH-IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
++ + Q+ + + E T+ + +AF G+ E+ R K A
Sbjct: 80 DIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSE-----EEIENRVKRA-------- 126
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGP 341
+ ++GLD + D+ +SGGQK+RV ++
Sbjct: 127 ---------------------MNIVGLDY--EDY-KDKSPFELSGGQKRRVAIAGVVAME 162
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
L +DE + GLD +I+N + +H +I + + L D II+++ G
Sbjct: 163 PKILILDEPTAGLDPKGRDEILN-KIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKG 221
Query: 402 QIVYQG-PRELV--LEFFASMGFRCPK 425
+ QG PRE+ +E S+G P+
Sbjct: 222 KCELQGTPREVFKEVETLESIGLAVPQ 248
|
Length = 287 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 52/168 (30%), Positives = 78/168 (46%), Gaps = 42/168 (25%)
Query: 894 GVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISG---YPKK---QETFA 940
G +TAL+G SG GK+T++ D++ G + G + G Y + E
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS----LKGRVLFDGTDLYDPRVDPVEVRR 94
Query: 941 RISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
RI +Q + PF +IYE++ F A R++ + ++ ELVE LR++
Sbjct: 95 RIGMVFQQPN---PFPKSIYENIAFGA--RING---------YTGDMDELVE-RSLRKAA 139
Query: 1000 V--------GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
V G S LS Q++RL IA + P +I MDEP S LD
Sbjct: 140 VWDECKDKLNESGYS-LSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 2e-05
Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 32/158 (20%)
Query: 897 TALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHS 953
T ++G+SG+GK+TL +L G +G I ++G+ K T + Y Q
Sbjct: 503 TTIVGMSGSGKSTLAKLLVGFFQAR--SGEILLNGFSLKDIDRHTLRQFINYLPQE---- 556
Query: 954 PFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP------- 1003
P++ +I E+LL A + DE+ E+ ++ + +P
Sbjct: 557 PYIFSGSILENLLLGA-----------KENVSQDEIWAACEIAEIKDDIENMPLGYQTEL 605
Query: 1004 --GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
S +S Q++R+ +A L+ + ++ +DE TS LD
Sbjct: 606 SEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLD 643
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-05
Identities = 62/250 (24%), Positives = 93/250 (37%), Gaps = 65/250 (26%)
Query: 177 PGR-LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG---HDMD--EFVP--QRTA 228
P R +T L GP SGKT+L+ +AG P G + NG D + F+P +R
Sbjct: 22 PARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRI 78
Query: 229 AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAI 288
Y+ Q TVR L + M
Sbjct: 79 GYVFQDARLFPHYTVRGNLRYG----------------------------------MWKS 104
Query: 289 ATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE-MMVGPALALFM 347
D + +LG++ D G +SGG+K+RV G ++ P L L M
Sbjct: 105 MRAQ------FDQLVALLGIEHLLDRYPGT-----LSGGEKQRVAIGRALLTAPEL-LLM 152
Query: 348 DEISTGLDSSTTFQI---VNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
DE LD +I + LR I+I ++ + E L D +++L +G++
Sbjct: 153 DEPLASLDLPRKREILPYLERLRDEINI----PILYVSHSLDEVLRLADRVVVLENGKVK 208
Query: 405 YQGPRELVLE 414
GP E V
Sbjct: 209 ASGPLEEVWG 218
|
Length = 352 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 323 GISGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL 381
G SGG+KKR ++++ P LA+ DE +GLD + + + +I+
Sbjct: 104 GFSGGEKKRNEILQLLLLEPDLAIL-DEPDSGLDIDALRLVAEVINKLREEGKSVLIITH 162
Query: 382 LQPAPETYDLFDDII-----LLSDGQIVYQGPRELVLEF 415
Q L D I +L DG+IV G +EL LE
Sbjct: 163 YQ------RLLDYIKPDRVHVLYDGRIVKSGDKELALEI 195
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 48/223 (21%), Positives = 83/223 (37%), Gaps = 47/223 (21%)
Query: 156 RIIPSKKRHL-----TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKV 208
+II S HL LK + +T L+GP GK+T L L L P + +
Sbjct: 4 KIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTI 63
Query: 209 SGTVTYNGHD-----MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEML 263
+G V+ G + D ++ + Q N ++ E + + R GV
Sbjct: 64 TGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPF-PFSIYENVIYGLRLAGV------- 115
Query: 264 TELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323
D V +A+ T ++A + + + E
Sbjct: 116 ---------------KDKAVLDEAVETSLKQAAIWDEVKDHL------------HESALS 148
Query: 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL 366
+SGGQ++RV ++ + +DE ++ LD ++ QI N L
Sbjct: 149 LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENML 191
|
Length = 252 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 57/247 (23%), Positives = 97/247 (39%), Gaps = 41/247 (16%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAG--KLDPTLKVSGTVTYNGHD---MDE 221
+L V+ I +T L+GP SGK+TLL +L P +VSG V +G D MD
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77
Query: 222 FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
+R + Q N I +++ E +A + L L + +K ++
Sbjct: 78 IELRRRVQMVFQIPNPIPNLSIFENVALGLK----------LNRLVKSKK--------EL 119
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGP 341
++ + Q + + D LD A + SGGQ++R+ +
Sbjct: 120 QERVRWALEKAQLWDEVKDR------LDAPAGKL---------SGGQQQRLCIARALAFQ 164
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
L DE + LD T +I + + + ++ + + + D + L G
Sbjct: 165 PEVLLADEPTANLDPENTAKIESLF---LELKKDMTIVLVTHFPQQAARISDYVAFLYKG 221
Query: 402 QIVYQGP 408
QIV GP
Sbjct: 222 QIVEWGP 228
|
Length = 250 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 50/253 (19%), Positives = 95/253 (37%), Gaps = 50/253 (19%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF----- 222
+ D I G + +++G SGK+T + L ++PT +G + +G ++ +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVEL 65
Query: 223 --VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
V ++ + Q MT+ + + G E R+EKA
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGW-------PEQERKEKA-------- 110
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
E LK++GL+ DE+ SGG ++RV +
Sbjct: 111 ------------LEL-------LKLVGLEEYEHRY-PDEL----SGGMQQRVGLARALAA 146
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
L MDE + LD + + L++ + ++ + E + D I+++
Sbjct: 147 EPDILLMDEAFSALDPLIRDSMQDELKK-LQATLQKTIVFITHDLDEAIRIGDRIVIMKA 205
Query: 401 GQIVYQGPRELVL 413
G+IV G + +L
Sbjct: 206 GEIVQVGTPDEIL 218
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 44/203 (21%), Positives = 80/203 (39%), Gaps = 44/203 (21%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNG-----HDMD 220
L D++ I ++T L+GP GK+T L L L +K+ G V +G D+D
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
++ + Q N M++ + +A+ R G+ + E+
Sbjct: 80 VVELRKRVGMVFQKPNPF-PMSIYDNVAYGPRIHGIKDKKEL------------------ 120
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGL-DVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
+ I ++ LK L D D + + +SGGQ++R+ +
Sbjct: 121 ---------------DKIVEWALKKAALWDEVKDDLKKSAL--KLSGGQQQRLCIARTIA 163
Query: 340 GPALALFMDEISTGLDSSTTFQI 362
+ MDE ++ LD +T +I
Sbjct: 164 VKPDVILMDEPTSALDPISTLKI 186
|
Length = 251 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 2e-05
Identities = 59/241 (24%), Positives = 99/241 (41%), Gaps = 49/241 (20%)
Query: 826 QSSSQSLSLAEAEASR-----PKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDK 880
++ S S A+R P++K + +PH + + +Y + KV + K
Sbjct: 6 EAKETSKSAPAETATRDIYLPPERKKVSGGGKPHVVAKNFSIYYGEFEAVKKVNADILSK 65
Query: 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL--------AGRKTGGYITGNITISGY 932
V TA++G SG GK+T + + + TG + I G
Sbjct: 66 YV--------------TAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGK 111
Query: 933 PKKQETFARISGYCEQNDIHSPF-VTIYESLLFSAWL-------RLSPEVDSETRKMFI- 983
+ + G Q +PF +I++++ + L +L V+ RK +
Sbjct: 112 FTDEVLLRKKIGMVFQKP--NPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALW 169
Query: 984 DEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1043
DEV + ++ N L GLS Q++RL +A L P I+ +DEPTS LD +A
Sbjct: 170 DEVSDRLDKNAL-----------GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKAT 218
Query: 1044 A 1044
A
Sbjct: 219 A 219
|
Length = 286 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-05
Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 20/153 (13%)
Query: 901 GVSGAGKTTLMDVLAGRK---TGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 957
G SG GK+TL+ ++AG + +G G ++ P + R G Q+ P ++
Sbjct: 36 GPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE----RGVGMVFQSYALYPHLS 91
Query: 958 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL--RQSLVGLPGVSGLSTEQRKR 1015
+ E++ F L+L+ E +++V E+++L L R+ LS QR+R
Sbjct: 92 VAENMSFG--LKLA-GAKKEEINQRVNQVAEVLQLAHLLDRKP-------KALSGGQRQR 141
Query: 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048
+ I LVA PS+ +DEP S LDA A + MR
Sbjct: 142 VAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1066
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 48/183 (26%), Positives = 88/183 (48%), Gaps = 18/183 (9%)
Query: 894 GVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDI 951
G LT ++G G GK++L+ + G + G + + P + T +R + Y
Sbjct: 27 GQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR-NRYSVAYAA 85
Query: 952 HSPFV---TIYESLLFSAWLRLSPEVDSETRKMFID--EVMELVELNPL-RQSLVGLPGV 1005
P++ T+ E++ F SP + + K D + ++L P Q+ +G G+
Sbjct: 86 QKPWLLNATVEENITFG-----SP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGI 139
Query: 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT--VRNTVDTGRTVVCT 1063
+ LS QR+R+ +A L N +I+F+D+P S LD + +M+ ++ D RT+V
Sbjct: 140 N-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLV 198
Query: 1064 IHQ 1066
H+
Sbjct: 199 THK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 52/180 (28%), Positives = 77/180 (42%), Gaps = 34/180 (18%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIT-GNITISGYPKK 935
L+ +S F +TAL+G SG GK+T + D++ G + G I I
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 936 QETFARISGYCEQNDIHSPF-VTIYESLLFSAWLR---------LSPEVDSETRKMFI-D 984
R G Q +PF +I+E++ + LR L+ V+ R + D
Sbjct: 82 VVELRRRVGMVFQKP--NPFPKSIFENVAYG--LRVNGVKDKAYLAERVERSLRHAALWD 137
Query: 985 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
EV + L +S +GL G Q++RL IA L P ++ MDEP S LD A
Sbjct: 138 EVKD-----RLHESALGLSG------GQQQRLCIARALAVEPEVLLMDEPASALDPIATQ 186
|
Length = 253 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 2e-05
Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 14/173 (8%)
Query: 872 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNIT 928
KV + LN VS G + ++G SGAGK+TL+ ++L +G I
Sbjct: 9 KVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQD 68
Query: 929 ISGYPKKQETFAR--ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEV 986
++ + T AR I + ++ S T++ ++ L +P+ + + + + E+
Sbjct: 69 LTTLSNSELTKARRQIGMIFQHFNLLSS-RTVFGNVALPLELDNTPKDEIKRK---VTEL 124
Query: 987 MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
+ LV L S P S LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 125 LALVGLGDKHDSY---P--SNLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 50/187 (26%), Positives = 75/187 (40%), Gaps = 58/187 (31%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 943
+ G+ F +TAL+G SG+GK+T + L R N TI AR++
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSL-NRM-------NDTIDI--------ARVT 79
Query: 944 G--YCEQNDIHSPFVTIYE-----SLLFSAWLRLSP-------------EVDSETRKMFI 983
G DI+ + +YE ++F R +P E K +
Sbjct: 80 GQILYRGIDINRKEINVYEMRKHIGMVFQ---RPNPFAKSIYENITFALERAGVKDKKVL 136
Query: 984 DEVMELVELNPLRQSLV-----------GLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1032
DE++E L+Q+ + L LS Q++RL IA + P I+ MD
Sbjct: 137 DEIVE----TSLKQAALWDQVKDDLHKSAL----TLSGGQQQRLCIARAIAVKPDILLMD 188
Query: 1033 EPTSGLD 1039
EP S LD
Sbjct: 189 EPASALD 195
|
Length = 267 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 44/182 (24%), Positives = 64/182 (35%), Gaps = 47/182 (25%)
Query: 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQH 234
+ G L+ G +GKTTLL LAG L SG + +G R AY+
Sbjct: 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSRFMAYLG-- 88
Query: 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAI-ATEGQ 293
H+ G+K D + + G+
Sbjct: 89 --HLP----------------------------------GLKADLSTLENLHFLCGLHGR 112
Query: 294 EANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTG 353
A + L ++GL DT+V R +S GQKKR+ + + PA +DE
Sbjct: 113 RAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYAN 167
Query: 354 LD 355
LD
Sbjct: 168 LD 169
|
Length = 214 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-05
Identities = 53/213 (24%), Positives = 89/213 (41%), Gaps = 21/213 (9%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR 941
LL+ ++ RPG + G SGAGKT+L+ LAG + +G I P
Sbjct: 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAG--LWPWGSGRI---SMPADSALL-- 459
Query: 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 1001
+ Q + P T+ E+L + P + + V+ V L L + L
Sbjct: 460 ---FLPQRP-YLPQGTLREALCY-------PNAAPDFSDAELVAVLHKVGLGDLAERLDE 508
Query: 1002 L-PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1060
LS +++RL A L+ P +F+DE TS LD + + ++ + TV
Sbjct: 509 EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATV 567
Query: 1061 VCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093
+ H+P++ F + +L L+ G + P
Sbjct: 568 ISVGHRPTLWNFHS-RQLELLDDAGGQNLKPPA 599
|
Length = 604 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 2e-05
Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 18/176 (10%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 942
+L+G+S P ++G +GAGK+++++ L + G I I +
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF--RIVELEKGRIMIDDCDVAKFGLT-- 1306
Query: 943 SGYCEQNDIHSPFVTIYES-LLFSAWLRLSPEVDSETRKMFIDEVMELVEL-NPLRQSLV 1000
D+ I +S +LFS +R + + SE + E +E + + + ++
Sbjct: 1307 -------DLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPF 1359
Query: 1001 GL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
GL G S QR+ L++A L+ I+ +DE T+ +D R +++ RT+R
Sbjct: 1360 GLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415
|
Length = 1495 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
+LK++S +K G LLG SGK+TLL L G L P G +T +G
Sbjct: 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVP 65
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 45/173 (26%), Positives = 68/173 (39%), Gaps = 13/173 (7%)
Query: 893 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIH 952
G + G +GAGKTTL+ VLAG +G I I G + +R Y
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 953 SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1012
++ E+L F L K + +V L +L V LS Q
Sbjct: 94 KADLSTLENLHFLCGLH------GRRAKQMPGSALAIVGLAGYEDTL-----VRQLSAGQ 142
Query: 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1065
+KRL +A ++ + +DEP + LD +V R + + G + T H
Sbjct: 143 KKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 3e-05
Identities = 52/225 (23%), Positives = 91/225 (40%), Gaps = 37/225 (16%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG----RKTGGYITGNITIS--- 930
+ K VL N +S G + ++G SGAGK+ LM VL G T G I ++ +
Sbjct: 11 DGKEVLKN-ISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKC 69
Query: 931 GYPKKQETFARISGYC------EQNDIHSP-------------------FVTIYESLLFS 965
GY ++ C E+ D + F + +
Sbjct: 70 GYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLD 129
Query: 966 AWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVAN 1025
L E+ E ++ + ++L+E+ L + + LS +++R+ +A +L
Sbjct: 130 NVLEALEEIGYEGKEA-VGRAVDLIEMVQLSHRITHI--ARDLSGGEKQRVVLARQLAKE 186
Query: 1026 PSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSI 1069
P + DEPT LD + A +V + V +G ++V T H P +
Sbjct: 187 PFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV 231
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 4e-05
Identities = 52/241 (21%), Positives = 84/241 (34%), Gaps = 69/241 (28%)
Query: 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM 911
EP E V V + G + D VS R G + + G+ GAG+T L
Sbjct: 253 EPPEEGIGEPVLEV---RNLSGGGKVRD-------VSFTVRAGEILGIAGLVGAGRTELA 302
Query: 912 DVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP---------FVT----- 957
L G + +G I + G + I SP +V
Sbjct: 303 RALFGAR--PASSGEILLDG---------------KPVRIRSPRDAIKAGIAYVPEDRKS 345
Query: 958 --------IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009
I E++ ++ R S R+ ID E + L + S
Sbjct: 346 EGLVLDMSIAENITLASLRRFS-------RRGLIDRRKERALAERYIRRL----RIKTPS 394
Query: 1010 TEQR---------KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1060
EQ +++ +A L +P ++ +DEPT G+D A A + R +R G+ +
Sbjct: 395 PEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAI 454
Query: 1061 V 1061
+
Sbjct: 455 L 455
|
Length = 500 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 4e-05
Identities = 51/229 (22%), Positives = 88/229 (38%), Gaps = 29/229 (12%)
Query: 848 VLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGK 907
VL T EVV V+ + + + VS R G + + GV+G G+
Sbjct: 243 VLRVVKPPSTPGEVVLEVE-----DLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQ 297
Query: 908 TTLMDVLAG-RKTGGYITGNITISGYPKKQETFARIS-----GYCEQNDIH---SPFVTI 958
+ L++ ++G RK +G I ++G R Y ++ +++
Sbjct: 298 SELVEAISGLRKP---ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSL 354
Query: 959 YESLLFSAWLRLSPEVDSETRKMFIDE------VMELVELNPLRQSLVGLPGVSGLSTEQ 1012
E+L+ P R F+D EL+E +R P LS
Sbjct: 355 AENLVLG-RHDKKPFS----RGGFLDRRAIRKFARELIEEFDVRAPSPDAP-ARSLSGGN 408
Query: 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1061
+++L +A EL P ++ +PT GLD A + + D G+ V+
Sbjct: 409 QQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 4e-05
Identities = 56/236 (23%), Positives = 98/236 (41%), Gaps = 46/236 (19%)
Query: 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYI 231
+ G+ L+GP +GKT+LL AL G L G++ NG ++ E P+ + +++
Sbjct: 373 LPAGQRIALVGPSGAGKTSLLNALLG----FLPYQGSLKINGIELRELDPESWRKHLSWV 428
Query: 232 SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATE 291
Q + + T+R+ + PD + +A+
Sbjct: 429 GQ-NPQLPHGTLRDNVLLG-------------------------NPDASDEQLQQAL--- 459
Query: 292 GQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIS 351
+ A V L GLD T +GD+ G+S GQ +R+ ++ P L +DE +
Sbjct: 460 -ENAWVSEFLPLLPQGLD----TPIGDQAA-GLSVGQAQRLALARALLQPCQLLLLDEPT 513
Query: 352 TGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
LD+ + ++ L + V L+ + +D I ++ DGQIV QG
Sbjct: 514 ASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ----WDQIWVMQDGQIVQQG 565
|
Length = 588 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 4e-05
Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 19/208 (9%)
Query: 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGY--PKKQETFAR 941
V+ + G A++G +G+GK+TL+ L G + T G +T G I+ KK + +
Sbjct: 26 VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRK 85
Query: 942 ISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP--LRQS 998
G Q H F T+ + + F E D++ + E++ELV L L +S
Sbjct: 86 KVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQK---AREMIELVGLPEELLARS 142
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTG 1057
L G Q +R+ IA L P ++ +DEPT+GLD + +M + + G
Sbjct: 143 PFELSG------GQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKG 196
Query: 1058 RTVVCTIHQPSIDIFEAFDELFLMKRGG 1085
T V H D D++ +M +G
Sbjct: 197 LTTVLVTHSME-DAARYADQIVVMHKGT 223
|
Length = 290 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 14/126 (11%)
Query: 137 LPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLL 196
+ + ++ + + + LKD+S I G ++G +GK+TLL
Sbjct: 13 FRIYHEKSYSLKKRLKGLAKGGRKVAEF-WALKDISFEIYKGERVGIIGHNGAGKSTLLK 71
Query: 197 ALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGV 256
+AG PT SG V G + A I E+T RE + G+
Sbjct: 72 LIAGIYKPT---SGKVKVTG---------KVAPLIELGAGFDPELTGRENIYLRGLILGL 119
Query: 257 GTRYEM 262
TR E+
Sbjct: 120 -TRKEI 124
|
Length = 249 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 4e-05
Identities = 52/205 (25%), Positives = 90/205 (43%), Gaps = 38/205 (18%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
+ DVS K G+ ++GP +GKTTL+ L DPT G + +G D+
Sbjct: 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDI-------- 399
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKA 287
N + ++R+++A + G + R G + D +VY
Sbjct: 400 --------NTVTRESLRKSIATVFQDAG------LFNRSIRENIRLGREGATDEEVY--- 442
Query: 288 IATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFM 347
E +A D+ LK DT+VG+ R +SGG+++R+ ++ A L +
Sbjct: 443 ---EAAKAAAAHDFILKRSN---GYDTLVGERGNR-LSGGERQRLAIARAILKNAPILVL 495
Query: 348 DEISTGLDSSTTFQI---VNCLRQN 369
DE ++ LD T ++ ++ LR+N
Sbjct: 496 DEATSALDVETEARVKNAIDALRKN 520
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 4e-05
Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 33/162 (20%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFA 940
+L+ VS +PG + L+G +GAGK+TL+ V+ G G I K+
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-----------KRNGKL 67
Query: 941 RISGYCEQN---DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 997
RI GY Q D P L + +LRL P +K I ++ V+
Sbjct: 68 RI-GYVPQKLYLDTTLP-------LTVNRFLRLRPGT----KKEDILPALKRVQ----AG 111
Query: 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
L+ P + LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 112 HLIDAP-MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 5e-05
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 1182 QFVACLWKQHWSYWRNPPYT-AVRFFFTAFIALLFGSLFWDLG 1223
Q A L ++ WR+P R +AL+FG++F +L
Sbjct: 2 QLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLD 44
|
Length = 210 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 5e-05
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
+L++VS I+PG ++GP SGK+TL + G L PT SG V +G D+ ++ P
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDGADISQWDP-- 71
Query: 227 TAAYISQHDNHIG 239
++ +H+G
Sbjct: 72 -----NELGDHVG 79
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 5e-05
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD---MDEF 222
L D+S + PG L +++GP +GKTT++ + GK P G+V + G D + E
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEH 72
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 5e-05
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 13/115 (11%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG---- 216
K R + LK +S I+ G + +GP +GKTT L L+G L PT SG V G
Sbjct: 30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPW 86
Query: 217 HDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGV-----GTRYEMLTEL 266
+F+ +R Q ++ V ++ A + R + L+EL
Sbjct: 87 KRRKKFL-RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSEL 140
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 5e-05
Identities = 62/258 (24%), Positives = 95/258 (36%), Gaps = 66/258 (25%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
L+DVS I G L GP +GK+TLL + G+ PT G + NGHD + +
Sbjct: 17 ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHD----LSRL 69
Query: 227 TAAYISQHDNHIG----------EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
I IG + TV E +A R G R E+ RR
Sbjct: 70 KGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPR-----EIRRRVSEV--- 121
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE 336
L ++GL A + +SGG+++RV
Sbjct: 122 --------------------------LDLVGLKHKARALPSQ-----LSGGEQQRVAIAR 150
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD-- 394
+V L DE + LD +++I+ + I+ GT V+ A +L +
Sbjct: 151 AIVNQPAVLLADEPTGNLDPDLSWEIMRLF-EEIN-RLGTTVLM----ATHDLELVNRMR 204
Query: 395 --IILLSDGQIVYQGPRE 410
++ L DG++V R
Sbjct: 205 HRVLALEDGRLVRDESRG 222
|
Length = 223 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 5e-05
Identities = 53/237 (22%), Positives = 91/237 (38%), Gaps = 46/237 (19%)
Query: 181 TLLLGPPSSGKTTLLLALAGKLDPT---LKVSGTVTYNGHDMDEFVP-QRTAAYISQHDN 236
T + G SGKTTL+ +AG P + ++G ++ P +R Y+ Q
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEAR 85
Query: 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEAN 296
++VR L RY M +R E
Sbjct: 86 LFPHLSVRGNL-----------RYGM-----KR--------------------ARPSERR 109
Query: 297 VITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 356
+ + +++LG+ + G +SGG+K+RV G ++ L MDE LD
Sbjct: 110 ISFERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDD 164
Query: 357 STTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413
++I+ L + +H G ++ + E L D +++L DG++ GP V
Sbjct: 165 PRKYEILPYL-ERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 5e-05
Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 31/160 (19%)
Query: 894 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG-----YPKKQETFARISGYCEQ 948
G TA++G +G GK+TL+ L+ T G++ + G Y K+ AR G Q
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASKE--VARRIGLLAQ 88
Query: 949 NDIHSPFVTIYESL---------LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
N +T+ E + LF+ W + + ++ T+ M + L QS
Sbjct: 89 NATTPGDITVQELVARGRYPHQPLFTRWRK--EDEEAVTKAMQATGITHLA-----DQS- 140
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
V LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 141 -----VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 5e-05
Identities = 49/216 (22%), Positives = 82/216 (37%), Gaps = 49/216 (22%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRKTGG--YITGNITISGYPKKQET 938
L+ VS G A++G +G+GKTT ++ L TG +I + K ++
Sbjct: 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDE------KNKKK 76
Query: 939 FARISGYCEQNDIHSPFV---------------------------TIYESLLFSAWLRLS 971
E+ I TI + ++F +S
Sbjct: 77 TKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGP---VS 133
Query: 972 PEVDSETRKMFIDEVMELVEL--NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 1029
V E K + +ELV L + L++S L G Q++R+ +A L P +
Sbjct: 134 MGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSG------GQKRRVALAGILAMEPDFL 187
Query: 1030 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1065
DEPT+GLD + ++ N G+T++ H
Sbjct: 188 VFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 5e-05
Identities = 56/223 (25%), Positives = 92/223 (41%), Gaps = 25/223 (11%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNI-------TISGYPK 934
++ VS + G + ++G SGAGKTTL ++AG T G + + T G P
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG-PD 358
Query: 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 994
+ R G Q P T+ ++L + L L E+ K I M +
Sbjct: 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDEL--ARMKAVITLKMVGFDEEK 416
Query: 995 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054
+ L P LS +R R+ +A L+ P I+ +DEPT +D I V +++
Sbjct: 417 AEEILDKYP--DELSEGERHRVALAQVLIKEPRIVILDEPTGTMD----PITKVDVTHSI 470
Query: 1055 -----DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092
+ +T + H + + D LM R G+ + +G
Sbjct: 471 LKAREEMEQTFIIVSHDMDF-VLDVCDRAALM-RDGKIVKIGD 511
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 6e-05
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1065
S LS Q++R++IA L+ +I DEPT LD+ + VM + D G TV+ H
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
Query: 1066 QPSI 1069
P +
Sbjct: 203 DPQV 206
|
Length = 648 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 7e-05
Identities = 63/260 (24%), Positives = 102/260 (39%), Gaps = 72/260 (27%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
L VS ++PG + LLG +GK+TL+ L+G P SG + +G + P+
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDA 80
Query: 228 AAY----ISQHDNHIGEMTVRETLAFS---ARCQGVGTRYEMLTELARREKAAGIKPDPD 280
A + Q + + ++V E + R G+ R M R +A +
Sbjct: 81 LAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAM------RRRAREL----- 129
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE---- 336
L LGLD+ DT+VGD +S Q++ V E
Sbjct: 130 ----------------------LARLGLDIDPDTLVGD-----LSIAQRQMV---EIARA 159
Query: 337 MMVGPALALFMDEISTGLDSSTT---FQIVNCLRQNIHINSGTAV--IS--LLQPAPETY 389
+ + L +DE + L T F ++ L+ G A+ IS L E +
Sbjct: 160 LSFDARV-LILDEPTAALTVKETERLFDLIRRLKA-----QGVAIIYISHRL----DEVF 209
Query: 390 DLFDDIILLSDGQIVYQGPR 409
++ D I +L DG++V P
Sbjct: 210 EIADRITVLRDGRVVGTRPT 229
|
Length = 500 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 7e-05
Identities = 63/240 (26%), Positives = 100/240 (41%), Gaps = 30/240 (12%)
Query: 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKKQETFARIS 943
VS G + AL+G SG GK+TL+ +LAG + G + + +S P Q R
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ----RPI 93
Query: 944 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 1003
Q+ P +T+ +++ F + D + V E++ L +++ P
Sbjct: 94 NMMFQSYALFPHMTVEQNIAFGL------KQDKLPKAEIASRVNEMLGLVHMQEFAKRKP 147
Query: 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVC 1062
LS QR+R+ +A L P ++ +DEP LD + + V + ++ G T V
Sbjct: 148 --HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVM 205
Query: 1063 TIHQPSIDIFEAFD---ELFLMKRGG-------QEIYVGPLGRHSCHLISYFEAIPGVQK 1112
H D EA + +M RG +EIY P R+S I GV K
Sbjct: 206 VTH----DQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVNVFEGVLK 261
|
Length = 377 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 8e-05
Identities = 45/183 (24%), Positives = 71/183 (38%), Gaps = 44/183 (24%)
Query: 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ--RTAAYIS 232
++PG LLG +GKTT L G T SG T G + + + Y
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGD---TTVTSGDATVAGKSILTNISDVHQNMGYCP 2018
Query: 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEG 292
Q D +T RE L AR +GV
Sbjct: 2019 QFDAIDDLLTGREHLYLYARLRGV----------------------------------PA 2044
Query: 293 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIST 352
+E + ++ ++ LGL + AD + G SGG K++++T ++G + +DE +T
Sbjct: 2045 EEIEKVANWSIQSLGLSLYADRLAGT-----YSGGNKRKLSTAIALIGCPPLVLLDEPTT 2099
Query: 353 GLD 355
G+D
Sbjct: 2100 GMD 2102
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 8e-05
Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 22/203 (10%)
Query: 877 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL--------AGRKTGG---YITG 925
+ DK +L + ++ + +MG SG+GK+TL+ VL + K G Y
Sbjct: 20 INDKAILKD-ITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGK 78
Query: 926 NI-TISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFID 984
+I I ++E G Q P ++IY+++ + L+ + K ++
Sbjct: 79 DIFQIDAIKLRKEV-----GMVFQQPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVE 131
Query: 985 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
E + V L + P S LS Q++RLTIA L P ++ MDEPTS +D +
Sbjct: 132 ECLRKVGLWKEVYDRLNSPA-SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQ 190
Query: 1045 IVMRTVRNTVDTGRTVVCTIHQP 1067
+ + + + +V H P
Sbjct: 191 AIEKLI-TELKNEIAIVIVSHNP 212
|
Length = 257 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 8e-05
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 1005 VSGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1060
LS +++ +A+ L + + +DE GLD R + + + G V
Sbjct: 75 RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQV 134
Query: 1061 VCTIHQPSIDIFEAFDELFLMKR 1083
+ H P ++ E D+L +K+
Sbjct: 135 IVITHLP--ELAELADKLIHIKK 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 8e-05
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 973 EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1032
EV ++K+ I + + L ++LVG S LS Q++R++IA ++ NP I+ +D
Sbjct: 548 EVVDVSKKVLIHDFVS--ALPDKYETLVG-SNASKLSGGQKQRISIARAIIRNPKILILD 604
Query: 1033 EPTSGLDARAAAIVMRTVRN 1052
E TS LD ++ +V +T+ N
Sbjct: 605 EATSSLDNKSEYLVQKTINN 624
|
Length = 1466 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 9e-05
Identities = 49/197 (24%), Positives = 88/197 (44%), Gaps = 23/197 (11%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG---YPKKQETF 939
+L G++ + G + A+MG +G+GK+TL V+AG + G+I G + E
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81
Query: 940 ARISGYCE-QNDIHSPFVTIYESLLFSAWLRLS----------PEVDSETRKMFIDEVME 988
A + + Q I P V+ + +LRL+ PE+D I+E ++
Sbjct: 82 AHLGIFLAFQYPIEIPGVSNAD------FLRLAYNSKRKFQGLPELDPLEFLEIINEKLK 135
Query: 989 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048
LV ++P S + G S ++KR I + + + +DE SGLD A I+
Sbjct: 136 LVGMDP---SFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAE 192
Query: 1049 TVRNTVDTGRTVVCTIH 1065
+ + + +++ H
Sbjct: 193 GINKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 9e-05
Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 50/200 (25%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
L L +++ I G+LT+++G GK++LLLA+ G++ + G V ++ + E
Sbjct: 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSF 70
Query: 225 QRT-------AAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+ T AY +Q + TV E + F + RY+ +T+ A ++P
Sbjct: 71 EATRSRNRYSVAYAAQ-KPWLLNATVEENITFGSPFN--KQRYKAVTD------ACSLQP 121
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI--SGGQKKRVTTG 335
D D+ L T +G+ RGI SGGQ++R+
Sbjct: 122 DIDL--------------------------LPFGDQTEIGE---RGINLSGGQRQRICVA 152
Query: 336 EMMVGPALALFMDEISTGLD 355
+ +F+D+ + LD
Sbjct: 153 RALYQNTNIVFLDDPFSALD 172
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 46/215 (21%), Positives = 82/215 (38%), Gaps = 49/215 (22%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
K IL D++ I+ G++ ++G SGK+TLL + G L+ SG V NG +
Sbjct: 7 KFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNII-GLLEK--FDSGQVYLNGQETP 63
Query: 221 EFVPQR-------TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273
++ Y+ Q+ I TV E L +L
Sbjct: 64 PLNSKKASKFRREKLGYLFQNFALIENETVEENL-----------------DLGL----- 101
Query: 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT 333
Y K E +E L+ +GL++ + + +SGG+++RV
Sbjct: 102 ---------KYKKLSKKEKREKKK---EALEKVGLNLKLKQKIYE-----LSGGEQQRVA 144
Query: 334 TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 368
++ P + DE + LD ++++ L +
Sbjct: 145 LARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE 179
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
K +LK VS I G + ++G SGK+TLL L G +PT SG V +NG +
Sbjct: 14 GKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSL 69
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-04
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
IL DVS I+PG ++GP SGK+TLL L G P SG+V Y+G D+
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP---ESGSVFYDGQDLA 518
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 65/260 (25%), Positives = 102/260 (39%), Gaps = 68/260 (26%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----FV 223
LK +S I G T LLGP +GK+TLLL L G P G V G +++ +V
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWV 77
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ D+ + TV + +AF G+ E+ RR + A +K V
Sbjct: 78 RSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKD-----EVERRVEEA-LKA-----V 126
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT-TGEMMVGPA 342
M + Y+L S GQKKRV G + + P
Sbjct: 127 RMWDFRDK-------PPYHL---------------------SYGQKKRVAIAGVLAMDPD 158
Query: 343 LALFMDEISTGLDSS---TTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL------FD 393
+ + +DE LD T +I++ L G VI T+D+ D
Sbjct: 159 V-IVLDEPMAYLDPRGQETLMEILDRLHNQ-----GKTVIV------ATHDVDLAAEWAD 206
Query: 394 DIILLSDGQIVYQGPRELVL 413
+I+L +G+++ +G + L+
Sbjct: 207 QVIVLKEGRVLAEGDKSLLT 226
|
Length = 274 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 28/204 (13%)
Query: 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG--------- 931
L +L+G++ + G AL+G SG+GK+T++ +L + G I + G
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEGEQLYHMPGR 70
Query: 932 ----YPKKQETFARIS---GYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFI 983
P ++ ++ G Q+ P T+ +++ + L L ++E R
Sbjct: 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKR---- 126
Query: 984 DEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1043
MEL+++ L +P + LS Q++R+ IA L P ++ DE TS LD
Sbjct: 127 --AMELLDMVGLADKADHMP--AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELV 182
Query: 1044 AIVMRTVRN-TVDTGRTVVCTIHQ 1066
V+ +R + T++ H+
Sbjct: 183 GEVLNVIRRLASEHDLTMLLVTHE 206
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 68/258 (26%), Positives = 112/258 (43%), Gaps = 63/258 (24%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT---LKVSGTVTYNGHDMDEFV 223
LK+VS I G +LG SGK+T+ L G L P +K+ G +T + ++ E
Sbjct: 24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDG-ITISKENLKEI- 81
Query: 224 PQRTAAYISQH-DNH-IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
++ I Q+ DN IG TV + +AF G + + +K
Sbjct: 82 -RKKIGIIFQNPDNQFIG-ATVEDDIAF-------GLENKKVP----PKK---------- 118
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM-VG 340
MK I I D KV D D+ + +SGGQK+RV ++ +
Sbjct: 119 ---MKDI---------IDDLAKKVGMEDYL------DKEPQNLSGGQKQRVAIASVLALN 160
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD-----LFDDI 395
P + +F DE ++ LD +I + + +IS+ T+D L D +
Sbjct: 161 PEIIIF-DESTSMLDPKGKREIKKIMVD-LRKTRKKTLISI------THDMDEAILADKV 212
Query: 396 ILLSDGQIVYQG-PRELV 412
I+ S+G+++ QG P+E++
Sbjct: 213 IVFSEGKLIAQGKPKEIL 230
|
Length = 271 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
KKR++ + VS IK G L+G GK+TL + G +PT SG + + G D+
Sbjct: 22 KKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDIT 78
Query: 221 EF 222
+
Sbjct: 79 KL 80
|
Length = 268 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 1e-04
Identities = 60/246 (24%), Positives = 97/246 (39%), Gaps = 63/246 (25%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP----TLKVSGTVTYNGHDMDEFV 223
L D++ I G L ++G GKT+L+ A+ G+L ++ + G+V Y V
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAY--------V 684
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP-DPDID 282
PQ + I TVRE + F G+ +E R +A + D+D
Sbjct: 685 PQVS---------WIFNATVRENILF-------GSDFES----ERYWRAIDVTALQHDLD 724
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+ TE E V ISGGQK+RV+ + +
Sbjct: 725 LLPGRDLTEIGERGV-------------------------NISGGQKQRVSMARAVYSNS 759
Query: 343 LALFMDEISTGLDSSTTFQIVN-CLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
D+ + LD+ Q+ + C++ + + V + L P L D IIL+S+G
Sbjct: 760 DIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP----LMDRIILVSEG 815
Query: 402 QIVYQG 407
I +G
Sbjct: 816 MIKEEG 821
|
Length = 1495 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTA 228
DVS I G + LLG GK+TLL LAG PT +G + +G D+ P QR
Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPI 93
Query: 229 AYISQHDNHIGEMTVRETLAF 249
+ Q MTV + +AF
Sbjct: 94 NMMFQSYALFPHMTVEQNIAF 114
|
Length = 377 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 1e-04
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 29/153 (18%)
Query: 897 TALMGVSGAGKTTLMDVLAG--RKTGGYITGN--------ITISGYPKKQETFARISGYC 946
TA+ G SGAGKT+L++ ++G R G I N I P+K+ RI GY
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR----RI-GYV 81
Query: 947 EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006
Q+ P + +L + + F D+++ L+ + PL L P
Sbjct: 82 FQDARLFPHYKVRGNLRYG--------MAKSMVAQF-DKIVALLGIEPL---LDRYP--G 127
Query: 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 19/189 (10%)
Query: 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ 936
K+ L+ VS G + L+G +GAGKTTL+ L G R T G I I+ + +
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNPL 995
++ E + S +T+ E+L + + + + I V EL L+
Sbjct: 77 IMREAVAIVPEGRRVFSR-MTVEENLAMGGFF-----AERDQFQERIKWVYELFPRLHER 130
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055
R G +S +++ L I L++ P ++ +DEP+ GL A I+++ + +T++
Sbjct: 131 RIQRAGT-----MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL----APIIIQQIFDTIE 181
Query: 1056 TGRTVVCTI 1064
R TI
Sbjct: 182 QLREQGMTI 190
|
Length = 237 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 1e-04
Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 38/195 (19%)
Query: 867 MPEEMKVQGV--LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAG- 916
M ++K++GV K +L ++ F +TA++G SG GK+TL+ D+++G
Sbjct: 1 MDPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 917 RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVD 975
R G + N I + G Q +PF +I++++ F P +
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQP--NPFPKSIFDNVAFG------PRML 112
Query: 976 SETRKMFIDEVMELVELNPLRQSLV-----------GLPGVSGLSTEQRKRLTIAVELVA 1024
T + +DEV+E LRQ+ + GL LS Q++RL IA L
Sbjct: 113 GTTAQSRLDEVVE----KSLRQAALWDEVKDNLHKSGL----ALSGGQQQRLCIARVLAI 164
Query: 1025 NPSIIFMDEPTSGLD 1039
P +I MDEP S LD
Sbjct: 165 EPEVILMDEPCSALD 179
|
Length = 251 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 45/156 (28%), Positives = 81/156 (51%), Gaps = 25/156 (16%)
Query: 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR--ISGYCEQN 949
G A++G SGAGK+TL++++AG T +G++T++G +R +S ++N
Sbjct: 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 950 DIHSPFVTIYE--SLLFSAWLRLSPE----VDSETRKMFIDEVMELVELNPLRQSLVGLP 1003
++ +T+ + L + L+L+ + + R+M I++++ R LP
Sbjct: 81 NLF-SHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLA-------R-----LP 127
Query: 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
G LS QR+R+ +A LV I+ +DEP S LD
Sbjct: 128 G--QLSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 22/191 (11%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGNITISGYPKKQETFA 940
L GV+ RPG + L G SGAGK+TL+ ++ G R + G I I+ ++ F
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 941 RIS-GYCEQNDIHSPFV--TIYESLLFSAWLRLSPEVDSETR-KMFIDEV--MELVELNP 994
R G Q+ H + T+Y+++ + + D R +D+V ++ + P
Sbjct: 78 RRQIGMIFQD--HHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFP 135
Query: 995 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054
++ LS +++R+ IA +V P+++ DEPT LD + ++R
Sbjct: 136 IQ-----------LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFN 184
Query: 1055 DTGRTVVCTIH 1065
G TV+ H
Sbjct: 185 RVGVTVLMATH 195
|
Length = 222 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 32/222 (14%), Positives = 70/222 (31%), Gaps = 8/222 (3%)
Query: 504 LLKANISRELLLMKRNSFVY-IFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATF 562
L+ + ++L+ + I LI + + L R + D F
Sbjct: 35 FLRRLLEFQVLVDASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGV 94
Query: 563 FAITMVNFNGFSEISMTIAKLPVFYKQRDFRF---FPPWAYAIPSWILKIPVSFLEVAVW 619
++++ FS + + + + + + V+ L +
Sbjct: 95 ILMSVLFSGIFS--FSSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLV 152
Query: 620 VFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLL 679
+ + +++G LLL + + + A+ G+ +L L
Sbjct: 153 LLVIAFLLGVPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPLG 212
Query: 680 SLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW 721
L G E + W + + +PLTYA +A+ W
Sbjct: 213 FLSGVFFPLELLPAWLQGISYINPLTYAIDAL--RYVYLGGW 252
|
Length = 286 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 51/209 (24%), Positives = 87/209 (41%), Gaps = 36/209 (17%)
Query: 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETF 939
+L +L VS G AL G SGAGK+TL+ L Y+ + I + + +
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSL----YANYLPDSGRI--LVRHEGAW 73
Query: 940 ARISGYCEQNDIHSPFVTI-YESLLFSAWLRLSPEVDSETRKMFIDEVME-LVE------ 991
++ + + TI Y S +LR+ P V + ++ V E L+E
Sbjct: 74 VDLAQASPREVLEVRRKTIGY----VSQFLRVIPRVSA------LEVVAEPLLERGVPRE 123
Query: 992 ---------LNPLR--QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1040
L L + L LP + S +++R+ IA +A+ I+ +DEPT+ LDA
Sbjct: 124 AARARARELLARLNIPERLWHLPP-ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDA 182
Query: 1041 RAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1069
+V+ + G ++ H +
Sbjct: 183 ANRQVVVELIAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQ 1066
LS Q++R+ IA L NPS+I +DE TS LD A ++ VR + T++ H
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITH- 201
Query: 1067 PSIDIFEAF--DELFLMKRG 1084
D+ EA D + +M +G
Sbjct: 202 ---DLSEAMEADHVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
LS Q++RL IA L NP ++ MDEPTS LD
Sbjct: 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 54/214 (25%), Positives = 90/214 (42%), Gaps = 28/214 (13%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITISGYPKKQE--T 938
L V+ G TA +G +G+GK+T+M +L G G + I+ K ++
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82
Query: 939 FARISGYCEQNDIHSPFV-TIYESLLFSAW-LRLSPEVDSETRK------MFIDEVMELV 990
+ G Q F T+ + + F +S E ++E + I E L
Sbjct: 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQE-EAEALAREKLALVGISE--SLF 139
Query: 991 ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050
E NP LS Q +R+ IA L P I+ +DEPT+GLD + +M
Sbjct: 140 EKNPFE-----------LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLF 188
Query: 1051 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+ +G T+V H D+ D ++++++G
Sbjct: 189 KKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKG 221
|
Length = 280 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 1e-04
Identities = 37/204 (18%), Positives = 58/204 (28%), Gaps = 69/204 (33%)
Query: 893 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIH 952
PG + ++G G+GKTTL LA I G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARE--------------LGPPGGGVIYIDG-------- 38
Query: 953 SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1012
E + L Q L+ + G S
Sbjct: 39 -----------------------------------EDILEEVLDQLLLIIVGGKKASGSG 63
Query: 1013 RKRLTIAVELV--ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD------TGRTVVCTI 1064
RL +A+ L P ++ +DE TS LDA A+++ + TV+ T
Sbjct: 64 ELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTT 123
Query: 1065 HQPSI----DIFEAFDELFLMKRG 1084
+ + FD ++
Sbjct: 124 NDEKDLGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 58/261 (22%), Positives = 91/261 (34%), Gaps = 66/261 (25%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T L +SG ++ G + L+GP +GK+TLL +AG SG++ + G ++ +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG----MTSGSGSIQFAGQPLEAWSAT 68
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
A AY+SQ M V L +PD
Sbjct: 69 ELARHRAYLSQQQTPPFAMPVWHYLTLH-------------------------QPD---- 99
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE--MMVG 340
K + L LD D + +SGG+ +RV + +
Sbjct: 100 ---KTRTEL-------LNDVAGALALD---DKL--GRSTNQLSGGEWQRVRLAAVVLQIT 144
Query: 341 PAL-----ALFMDEISTGLD---SSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392
P L +DE LD S ++++ L Q G A++ T
Sbjct: 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ-----QGLAIVMSSHDLNHTLRHA 199
Query: 393 DDIILLSDGQIVYQGPRELVL 413
LL G+++ G RE VL
Sbjct: 200 HRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 58/251 (23%), Positives = 101/251 (40%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T+L +S G++T L+G SGK+TLL L P+ G + + ++ + +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSK 81
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R AY+ Q MTVRE +A +G RY L R
Sbjct: 82 AFARKVAYLPQQLPAAEGMTVRELVA-------IG-RYPWHGALGRF------------- 120
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
G + + ++GL A +V +SGG+++R ++ +
Sbjct: 121 ---------GAADREKVEEAISLVGLKPLAHRLVDS-----LSGGERQRAWIAMLVAQDS 166
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE ++ LD + ++ L + G VI++L D ++ L G+
Sbjct: 167 RCLLLDEPTSALDIAHQVDVL-ALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGE 225
Query: 403 IVYQG-PRELV 412
++ QG P EL+
Sbjct: 226 MIAQGTPAELM 236
|
Length = 265 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 152 LNYLRII--PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVS 209
L+ L +S I G ++G +GK+TLL A+AG L PT S
Sbjct: 4 LSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---S 60
Query: 210 GTVTYNGHDMDEFVPQRTAAYISQ-----HDNHIGEMTVRETLAFSARCQG 255
G + +G D+ + + A +++ E+T+ E LA A +G
Sbjct: 61 GQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLAL-AESRG 110
|
Length = 263 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 55/250 (22%), Positives = 97/250 (38%), Gaps = 59/250 (23%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH---DMD 220
+L+DVS + PG +T L+GP SGK+T++ L P G V +G +
Sbjct: 26 DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ---GGQVLLDGKPISQYE 82
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT-RYEMLTELARREKAAGIKPDP 279
+ + Q ++++ +A+ G+ + +E + E A++ A
Sbjct: 83 HKYLHSKVSLVGQEPVLFAR-SLQDNIAY-----GLQSCSFECVKEAAQKAHAHSF---- 132
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG--ISGGQKKRVTTGEM 337
+ L DT VG+ +G +SGGQK+RV
Sbjct: 133 -------------------------ISELASGYDTEVGE---KGSQLSGGQKQRVAIARA 164
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETYDLFD 393
++ L +DE ++ LD+ + Q V + VI S ++ A D
Sbjct: 165 LIRNPQVLILDEATSALDAESE-QQVQQALYDWPERRTVLVIAHRLSTVERA-------D 216
Query: 394 DIILLSDGQI 403
I++L G+I
Sbjct: 217 QILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 25/166 (15%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQET 938
+LN +S + R G + G SG GK+TL+ ++A +G + IS E
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKP--EI 78
Query: 939 FARISGYCEQNDIHSPFV---TIYESLLFSAWLR-LSPEVDSETRKMFIDEVMEL-VELN 993
+ + YC Q +P + T+Y++L+F +R P+ +F+D++ +
Sbjct: 79 YRQQVSYCAQ----TPTLFGDTVYDNLIFPWQIRNQQPD-----PAIFLDDLERFALPDT 129
Query: 994 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
L ++ ++ LS +++R+++ L P ++ +DE TS LD
Sbjct: 130 ILTKN------IAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 16/166 (9%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFA 940
L+ V+ G L+G +G+GK+TL+ L G +G I + I+ K
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
Query: 941 RISGYCEQNDIHSPFV-TIYESLLFSAW-LRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
+ G Q + F TI + + F L LS + E + + M +V L
Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLS---EEEI-ENRVKRAMNIVGL-----D 133
Query: 999 LVGLPGVS--GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1042
S LS Q++R+ IA + P I+ +DEPT+GLD +
Sbjct: 134 YEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179
|
Length = 287 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 62/278 (22%), Positives = 106/278 (38%), Gaps = 57/278 (20%)
Query: 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF 222
+ + L +VS + G++ ++G +GK+TL+ + PT SG+V +G D+
Sbjct: 16 KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTL 72
Query: 223 V-PQRTAA-----YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
+ T A I QH N + TV +A EL K
Sbjct: 73 SNSELTKARRQIGMIFQHFNLLSSRTVFGNVALP-------------LELDNTPK----- 114
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE 336
E L ++GL D +SGGQK+RV
Sbjct: 115 ----------------DEIKRKVTELLALVGL-----GDKHDSYPSNLSGGQKQRVAIAR 153
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396
+ L DE ++ LD +TT I+ L++ I+ G ++ + + D +
Sbjct: 154 ALASNPKVLLCDEATSALDPATTQSILELLKE-INRRLGLTILLITHEMDVVKRICDCVA 212
Query: 397 LLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 434
++S+G+++ QG V E F+ PK F++
Sbjct: 213 VISNGELIEQGT---VSEIFSH-----PKTPLAQKFIR 242
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 2e-04
Identities = 56/268 (20%), Positives = 108/268 (40%), Gaps = 50/268 (18%)
Query: 149 EDILNYLRI---IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--- 202
ED+ N R+ I K ILKD++ I + ++GP SGK+TLL L +
Sbjct: 8 EDVFNISRLYLYINDK----AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY 63
Query: 203 DPTLKVSGTVTYNGHD---MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTR 259
D +KV G V Y G D +D ++ + Q N +++ + +A+ + G+ +
Sbjct: 64 DSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEK 123
Query: 260 YEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319
E+ + + G+ +VY + + Q
Sbjct: 124 REIKKIVEECLRKVGLWK----EVYDRLNSPASQ-------------------------- 153
Query: 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
+SGGQ++R+T + L MDE ++ +D + I + + + + A++
Sbjct: 154 ----LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITE---LKNEIAIV 206
Query: 380 SLLQPAPETYDLFDDIILLSDGQIVYQG 407
+ + + D + L +G++V G
Sbjct: 207 IVSHNPQQVARVADYVAFLYNGELVEWG 234
|
Length = 257 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 2e-04
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 956 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1015
++IYE++ F +V + IDE +E L + VG G S LS Q++R
Sbjct: 1310 MSIYENIKFGKEDATREDVKRACKFAAIDEFIE--SLPNKYDTNVGPYGKS-LSGGQKQR 1366
Query: 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQ 1066
+ IA L+ P I+ +DE TS LD+ + ++ +T+ + D +T++ H+
Sbjct: 1367 IAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418
|
Length = 1466 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 59/257 (22%), Positives = 107/257 (41%), Gaps = 66/257 (25%)
Query: 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF 222
HL + D++ ++ G +LGP +GK+TLL +AG L P SG++T NG D
Sbjct: 12 HHLPMRFDLT--VERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTT 66
Query: 223 VP-QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
P +R + + Q +N +TV + + G+G G+K +
Sbjct: 67 PPSRRPVSMLFQENNLFSHLTVAQNI-------GLGL-------------NPGLKLNAAQ 106
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGP 341
+ AIA + +G++ + G +SGGQ++RV +V
Sbjct: 107 REKLHAIARQ--------------MGIEDLLARLPGQ-----LSGGQRQRVALARCLVRE 147
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL----------QPAPETYDL 391
L +DE + LD + +++ + Q ++LL + AP +
Sbjct: 148 QPILLLDEPFSALDPALRQEMLTLVSQVCQ----ERQLTLLMVSHSLEDAARIAPRS--- 200
Query: 392 FDDIILLSDGQIVYQGP 408
++++DG+I + GP
Sbjct: 201 ----LVVADGRIAWDGP 213
|
Length = 232 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-04
Identities = 44/180 (24%), Positives = 66/180 (36%), Gaps = 48/180 (26%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTL--MDVLAGRKTGG--YITGNITISGYPKKQETF 939
L+GVS G A++G SG GK+TL + + TGG Y G + + +
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQG-QDLLKADPEAQKL 89
Query: 940 ARISGYCEQNDIHSPFVTIYESL--------LFSAWLRLSPEVDSETRKMFIDEVMELVE 991
R I F Y SL + L ++ + + R+ +M V
Sbjct: 90 LR-------QKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKV- 141
Query: 992 LNPLRQSLVGLPGVSGLSTE------------QRKRLTIAVELVANPSIIFMDEPTSGLD 1039
GL E QR+R+ IA L+ +P ++ DEP S LD
Sbjct: 142 ---------------GLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 2e-04
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+LKD+S I PG L+G +GK+TLL +AG+L+P G VT+
Sbjct: 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTWG--------ST 62
Query: 226 RTAAYISQ 233
Y Q
Sbjct: 63 VKIGYFEQ 70
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 30/160 (18%)
Query: 896 LTALMGVSGAGKTTLM-------DVLAGRKTGGYIT--GNITISGYPKKQETFARISGYC 946
+TA +G SG GK+T++ D++ G + G +T G + E RI G
Sbjct: 38 ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRI-GMV 96
Query: 947 EQNDIHSPF-VTIYESLLFSAWLR-----LSPEVDSETRKMFI-DEVMELVELNPLRQSL 999
Q +PF +IY+++ + A + + V+ R+ + DEV + L+QS
Sbjct: 97 FQKP--NPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-----KLKQS- 148
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
G+S LS Q++RL IA + P +I MDEP S LD
Sbjct: 149 ----GLS-LSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
|
Length = 264 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG 216
+ LKDVS + G L+G +GK+TLL LAG P SGTVT G
Sbjct: 31 EVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD---SGTVTVRG 83
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 58/206 (28%), Positives = 89/206 (43%), Gaps = 30/206 (14%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----TGNITISGYPKKQETF 939
L VS G L+G +GAGK+TL+ +LAG I +G +T+ G
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG------IYPPDSGTVTVRG-------- 83
Query: 940 ARISGYCEQNDIHSPFVTIYESLLFSA-WLRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
R+S +P +T E++ + L LS + E IDE++E EL
Sbjct: 84 -RVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDE----KIDEIIEFSELGDFID- 137
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1058
LP V S+ + RL A+ P I+ +DE + DA R +R + G+
Sbjct: 138 ---LP-VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGK 193
Query: 1059 TVVCTIHQPSIDIFEAFDELFLMKRG 1084
TV+ H PS I D ++++G
Sbjct: 194 TVILVSHDPSS-IKRLCDRALVLEKG 218
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 896 LTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPKKQETFA----RISGYCEQND 950
+TAL+G SG GK+T + I G + I G K + + +Q +
Sbjct: 30 ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPN 89
Query: 951 IHSPFV-TIYESLLFSAWLR-LSPEVDSETRKMFIDEVMELVEL-----NPLRQSLVGLP 1003
+ FV +IYE++ ++ L + D E + + + ++ V L + L+Q+ + L
Sbjct: 90 V---FVKSIYENISYAPKLHGMIKNKDEE--EALVVDCLQKVGLFEEVKDKLKQNALALS 144
Query: 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
G Q++RL IA L P ++ +DEPTS LD ++ ++ ++
Sbjct: 145 G------GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK 186
|
Length = 246 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 2e-04
Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 38/165 (23%)
Query: 896 LTALMGVSGAGKTTLM-------DVLAGRKTGGYIT--------GNITISGYPKKQETFA 940
+TAL+G SG GK+T + D++ G + G+I + + KK
Sbjct: 31 VTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKK----- 85
Query: 941 RISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL-----NP 994
G Q +PF +I++++ + LR+ E D + + ++E ++ L +
Sbjct: 86 --VGMVFQKP--NPFPKSIFDNVAYG--LRIHGEDDEDFIEERVEESLKAAALWDEVKDK 139
Query: 995 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
L +S +GL G Q++RL IA + +P +I MDEP S LD
Sbjct: 140 LDKSALGLSG------GQQQRLCIARTIAVSPEVILMDEPCSALD 178
|
Length = 250 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 316 VGDEMIRGISGGQKKRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 374
V + + G+SGGQ++RV + + P + L +DE ++ LD T ++ L+ +
Sbjct: 93 VLENIALGLSGGQQQRVALARALAMDPDV-LLLDEPTSALDPITRREVRALLKS-LQAQL 150
Query: 375 GTAVISLLQPAPETYDLFDDIILLSDGQ 402
G V+ + E L D +++L DG+
Sbjct: 151 GITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 3e-04
Identities = 49/194 (25%), Positives = 71/194 (36%), Gaps = 60/194 (30%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
+LKD+S I G ++GP +GK+TLL LAG+L P SGTV
Sbjct: 335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVG--------E 383
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
Y QH + + T E L+E PD D
Sbjct: 384 TVKIGYFDQHRDELDPDK---------------TVLEELSEGF-----------PDGD-- 415
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM---IRGISGGQKKRVTTGEMMVGP 341
E V YL G G++ + +SGG+K R+ ++++ P
Sbjct: 416 ---------EQEVRA--YLGRFGFT-------GEDQEKPVGVLSGGEKARLLLAKLLLQP 457
Query: 342 ALALFMDEISTGLD 355
L +DE + LD
Sbjct: 458 PNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 48/208 (23%), Positives = 86/208 (41%), Gaps = 54/208 (25%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHD-----MD 220
LK ++ I+ ++T L+GP GK+T L L L P++K+ G V +G D +D
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARRE-KAAGIKPDP 279
++ + Q N M++ + +A+ R G+ + + L E+ + K A + +
Sbjct: 79 VNQLRKRVGMVFQQPNPF-PMSIYDNVAYGPRTHGIKDKKK-LDEIVEKSLKGAALWDEV 136
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
+ A+ G+SGGQ++R + +
Sbjct: 137 KDRLKKSAL----------------------------------GLSGGQQQR-----LCI 157
Query: 340 GPALA-----LFMDEISTGLDSSTTFQI 362
ALA L MDE ++ LD +T +I
Sbjct: 158 ARALAVEPEVLLMDEPTSALDPISTLKI 185
|
Length = 250 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 3e-04
Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 51/207 (24%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEFVPQ 225
+KDVS +T ++GP GK+T+L ++ D P+ +V+G + + D+
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI------ 73
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP--DIDV 283
+D + +++R RR KP+P + +
Sbjct: 74 --------YDRGVDPVSIR-----------------------RRVGMVFQKPNPFPAMSI 102
Query: 284 YMKAIA-------TEGQEANVITDYYLKVLGL-DVCADTMVGDEMIRGISGGQKKRVTTG 335
Y IA EA+ I + LK + L D D + + M +SGGQ++R+
Sbjct: 103 YDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAME--LSGGQQQRLCIA 160
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQI 362
+ + MDE ++ LD +T +I
Sbjct: 161 RTIAVKPEVILMDEPASALDPISTLKI 187
|
Length = 252 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
+L DVS +KPG++ LLGP +GK+TL+ + G + P G + NG +VPQ+
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD---EGVIKRNGKLRIGYVPQK 75
|
Length = 251 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 3e-04
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPT 205
PG + L++GPP SGKTTL ALA +L P
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPP 29
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-04
Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 20/162 (12%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFAR 941
+L G+ G + AL+G +GAGK+TLM ++AG +G + I G P + T A+
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNPCARLTPAK 82
Query: 942 ISGY----CEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL-VELNPLR 996
Q + P +++ E++LF L S +KM + L +L+
Sbjct: 83 AHQLGIYLVPQEPLLFPNLSVKENILF----GLPKRQASM-QKM-KQLLAALGCQLDLDS 136
Query: 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038
+ L R+ + I L+ + I+ +DEPT+ L
Sbjct: 137 SA-------GSLEVADRQIVEILRGLMRDSRILILDEPTASL 171
|
Length = 510 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 3e-04
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 995 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054
LR+ L+ P LS +++RL A L+ P +F+DE TS LD + + + ++
Sbjct: 80 LREQLI-YPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK--- 135
Query: 1055 DTGRTVVCTIHQPSIDIF 1072
+ G TV+ H+PS+ F
Sbjct: 136 ELGITVISVGHRPSLWKF 153
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 4e-04
Identities = 54/260 (20%), Positives = 98/260 (37%), Gaps = 57/260 (21%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
KR ++ VS +K G + LLGP +GKTT + G + P SG + +G D+
Sbjct: 11 GKR--KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDIT 65
Query: 221 EFVPQRTA----AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
+ + A Y+ Q + ++TV E + +G+ + R EK
Sbjct: 66 KLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKE-------REEKL---- 114
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE 336
+ L+ + + +SGG+++RV
Sbjct: 115 -----------------------EELLEEFHITHLRKSKAS-----SLSGGERRRVEIAR 146
Query: 337 MMV-GPALALFMDEISTGLDSSTTFQIVNCLRQNIHI--NSGTAVISLLQPAPETYDLFD 393
+ P L +DE G+D I ++ I I + G V+ ET + D
Sbjct: 147 ALATNPKF-LLLDEPFAGVDPIAVQDI----QKIIKILKDRGIGVLITDHNVRETLSITD 201
Query: 394 DIILLSDGQIVYQG-PRELV 412
++ +G+++ +G P E+
Sbjct: 202 RAYIIYEGKVLAEGTPEEIA 221
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 4e-04
Identities = 55/231 (23%), Positives = 93/231 (40%), Gaps = 47/231 (20%)
Query: 179 RLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYISQHDN 236
++T LG +GKTT L L G L PT SGTV G D++ +++ QH+
Sbjct: 957 QITAFLGHNGAGKTTTLSILTGLLPPT---SGTVLVGGKDIETNLDAVRQSLGMCPQHNI 1013
Query: 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEAN 296
+TV E + F A+ +G +EA
Sbjct: 1014 LFHHLTVAEHILFYAQLKG----------------------------------RSWEEAQ 1039
Query: 297 VITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDS 356
+ + L+ GL +E + +SGG +++++ VG A + +DE ++G+D
Sbjct: 1040 LEMEAMLEDTGLH-----HKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDP 1094
Query: 357 STTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
+ I + L + SG +I E L D I ++S G++ G
Sbjct: 1095 YSRRSIWDLL---LKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSG 1142
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-04
Identities = 61/251 (24%), Positives = 97/251 (38%), Gaps = 47/251 (18%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-- 224
+L +++ IKPG ++GP SGK+TL L P G V +G D+ P
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH---GQVLVDGVDLAIADPAW 528
Query: 225 -QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+R + Q +N + ++R+ +A +P
Sbjct: 529 LRRQMGVVLQ-ENVLFSRSIRDNIALC---------------------------NPGAPF 560
Query: 284 -YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
++ A + I L +T VG E +SGGQ++R+ +VG
Sbjct: 561 EHVIHAAKLAGAHDFI-------SELPQGYNTEVG-EKGANLSGGQRQRIAIARALVGNP 612
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L DE ++ LD + I+ +R+ I G VI + T D II+L GQ
Sbjct: 613 RILIFDEATSALDYESEALIMRNMRE---ICRGRTVIIIAHRL-STVRACDRIIVLEKGQ 668
Query: 403 IVYQGPRELVL 413
I G E +L
Sbjct: 669 IAESGRHEELL 679
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 48/202 (23%), Positives = 80/202 (39%), Gaps = 44/202 (21%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHDM-----D 220
+K+V I G++T L+GP GK+T+L +L L + G V ++G D+ D
Sbjct: 29 VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+R + Q N + ++ E +AF AR G + L E + R+ A
Sbjct: 89 PVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYTGDMDELVERSLRKAAV------- 140
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
D C D + +E +SGGQ++R+ +
Sbjct: 141 ---------------------------WDECKDKL--NESGYSLSGGQQQRLCIARTIAI 171
Query: 341 PALALFMDEISTGLDSSTTFQI 362
+ MDE + LD +T +I
Sbjct: 172 EPEVILMDEPCSALDPISTLKI 193
|
Length = 269 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 4e-04
Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 19/161 (11%)
Query: 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYC 946
+S R G A++G +G+GK+TL +LAG +G + I +P + Y
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT--SGELLIDDHPLHFGDY----SYR 85
Query: 947 EQNDIHSPFVTIYESL--------LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
Q I F SL + LRL+ +++ E R+ I E + V L P S
Sbjct: 86 SQR-IRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHAS 144
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
P + L+ Q++RL +A L+ P +I DE + LD
Sbjct: 145 Y--YPHM--LAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 5e-04
Identities = 49/208 (23%), Positives = 79/208 (37%), Gaps = 43/208 (20%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
L D+S + PG L +L+GP +GKTTL+ + GK P G V ++G D
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGD-TD------- 69
Query: 228 AAYISQHDNH-IGEMTVRETLAFSARCQGVG------TRYEMLTELARREKAAGIKPDPD 280
+++ H I G+G T +E LT E A D
Sbjct: 70 ---LTKLPEHRIARA-------------GIGRKFQKPTVFENLTVRENLELALNR--DKS 111
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
+ + A + + D L +GL D + +S GQK+ + G ++
Sbjct: 112 VFASLFARLRAEERRRI--DELLATIGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQ 164
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQ 368
L +DE G+ + T + L+
Sbjct: 165 DPKLLLLDEPVAGMTDAETEKTAELLKS 192
|
Length = 249 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 5e-04
Identities = 45/190 (23%), Positives = 74/190 (38%), Gaps = 19/190 (10%)
Query: 885 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITI---SGYPKKQET 938
+S + G + G+ G+G+T LM+ L G R G I S ++
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339
Query: 939 FARISGYCEQNDIHSPF-----VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL- 992
A I+ N F + I SL + + + EL+ L
Sbjct: 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK 399
Query: 993 -NPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
+ + Q++ L G Q+K L I+ L P +I DEPT G+D A A + + +R
Sbjct: 400 CHSVNQNITELSG-----GNQQKVL-ISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMR 453
Query: 1052 NTVDTGRTVV 1061
D G+ ++
Sbjct: 454 QLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 5e-04
Identities = 52/190 (27%), Positives = 77/190 (40%), Gaps = 42/190 (22%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGNITISGYPKKQE--- 937
L GVS +TAL+G SG GK+T + L R I G++ + G Q+
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 938 --TFARISGYCEQNDIHSPF-VTIYESLLFSA----------WLRLSPEVDSETRKMFI- 983
+ G Q+ +PF +I E++ + RL D + +
Sbjct: 121 LVELRKRVGMVFQSP--NPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVE 178
Query: 984 ---------DEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1034
DEV + ++ N L GLS Q++RL IA L +P +I MDEP
Sbjct: 179 RSLRQAALWDEVNDRLDDNAL-----------GLSGGQQQRLCIARCLAVDPEVILMDEP 227
Query: 1035 TSGLDARAAA 1044
S LD A +
Sbjct: 228 ASALDPIATS 237
|
Length = 305 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-04
Identities = 66/255 (25%), Positives = 107/255 (41%), Gaps = 60/255 (23%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----FV 223
L DV+ +K G ++LG SGK+T+ + L P+ G V +G D + +
Sbjct: 26 LDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWD 82
Query: 224 PQRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ A + Q+ DN I V E +AF E L GI P+
Sbjct: 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGP---------ENL----------GIPPE---- 119
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG----ISGGQKKRVT-TGEM 337
E D LK +G+ E R +SGGQK+RV G +
Sbjct: 120 -----------EIRERVDESLKKVGMY---------EYRRHAPHLLSGGQKQRVAIAGIL 159
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397
+ P +F DE + LD S ++VN +++ ++ G +I + E + D II+
Sbjct: 160 AMRPECIIF-DEPTAMLDPSGRREVVNTIKE-LNKKYGITIILITHYMEEAVEA-DRIIV 216
Query: 398 LSDGQIVYQG-PREL 411
+ G++V +G P+E+
Sbjct: 217 MDSGKVVMEGTPKEI 231
|
Length = 280 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 5e-04
Identities = 55/209 (26%), Positives = 95/209 (45%), Gaps = 21/209 (10%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGNITISGYPKKQETFAR 941
L ++ G AL+G SG+GK+T+ ++L T Y G I + G+ + T A
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLL----TRFYDIDEGEILLDGHDLRDYTLAS 414
Query: 942 ISGYC---EQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
+ QN +H TI ++ ++ + S E E +M M+ + +
Sbjct: 415 LRNQVALVSQN-VHLFNDTIANNIAYARTEQYSREQIEEAARM--AYAMDFIN--KMDNG 469
Query: 999 L---VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055
L +G GV LS QR+R+ IA L+ + I+ +DE TS LD + + + + +
Sbjct: 470 LDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQ 527
Query: 1056 TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
RT + H+ S E DE+ +++ G
Sbjct: 528 KNRTSLVIAHRLS--TIEKADEILVVEDG 554
|
Length = 582 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 6e-04
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
T + ++S + + LLGP +GK+TLL + G L PT SG + ++GH
Sbjct: 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPW 64
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 6e-04
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1065
LS Q++RL IA + +P +I MDEP S LD A + + + + TVV H
Sbjct: 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 6e-04
Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 16/209 (7%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFA 940
LN S F+ +T ++G +G+GK+T++ + G +TG I G+ I KK +
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86
Query: 941 RIS---GYCEQNDIHSPFV-TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
R+ G Q + F TI + + F P E ++ +V EL++L L
Sbjct: 87 RLRKEIGLVFQFPEYQLFQETIEKDIAFG------PVNLGENKQEAYKKVPELLKLVQLP 140
Query: 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVD 1055
+ V LS Q++R+ +A + + + + +DEPT GLD + + R +
Sbjct: 141 EDYVKRSPFE-LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE 199
Query: 1056 TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+ ++ H + DE+ +M G
Sbjct: 200 YKKRIIMVTHNMD-QVLRIADEVIVMHEG 227
|
Length = 289 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 7e-04
Identities = 56/258 (21%), Positives = 99/258 (38%), Gaps = 51/258 (19%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
KKR ++ DVS + G + LLGP +GKTT + G + P SG + + D+
Sbjct: 15 KKRK--VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDIT 69
Query: 221 EFVPQRTA----AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
+ + A Y+ Q + ++TV + + R + L + R+E+ +
Sbjct: 70 KLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLE-----IREKDLKKAERKEELDAL- 123
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE 336
L+ + D+ +SGG+++RV
Sbjct: 124 --------------------------LEEFHITHLRDSKAY-----SLSGGERRRVEIAR 152
Query: 337 -MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395
+ P L DE G+D I ++ G V+ ET D+ D
Sbjct: 153 ALAANPKFILL-DEPFAGVDPIAVIDIQRIIKHLKDRGIG--VLITDHNVRETLDICDRA 209
Query: 396 ILLSDGQIVYQG-PRELV 412
++SDG+++ +G P E+V
Sbjct: 210 YIISDGKVLAEGSPEEIV 227
|
Length = 243 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 7e-04
Identities = 61/260 (23%), Positives = 105/260 (40%), Gaps = 73/260 (28%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
++++ S ++PG+ L+G SGK+T+ +AG P SG + ++G +E +
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREV 550
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLT---------ELARREKAAGIKP 277
A ++ M ++ F GT + LT +L R K A I
Sbjct: 551 LANSVA--------MVDQDIFLFE------GTVRDNLTLWDPTIPDADLVRACKDAAIH- 595
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
DV G +A + E +SGGQ++R+
Sbjct: 596 ----DVITSR--PGGYDAELA--------------------EGGANLSGGQRQRLEIARA 629
Query: 338 MVG-PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG-TAVI-----SLLQPAPETYD 390
+V P++ L +DE ++ LD T I + LR+ G T +I S ++
Sbjct: 630 LVRNPSI-LILDEATSALDPETEKIIDDNLRRR-----GCTCIIVAHRLSTIRDC----- 678
Query: 391 LFDDIILLSDGQIVYQGPRE 410
D+II+L G++V +G E
Sbjct: 679 --DEIIVLERGKVVQRGTHE 696
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 7e-04
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 25/178 (14%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----E 937
+L +S F G + ++G SGAGK+TL+ ++ + G+I I G K +
Sbjct: 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI--NRLIDPTEGSILIDGVDIKTIDVID 74
Query: 938 TFARISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 994
+I +Q P + T+ +++ + L+ VD E + +V LN
Sbjct: 75 LRRKIGMVFQQ-----PHLFEGTVKDNIEYGPMLKGEKNVDVEY-------YLSIVGLN- 121
Query: 995 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052
V LS + +R++IA L NP ++ +DEPTS LD + I+ +
Sbjct: 122 ---KEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVK 176
|
Length = 241 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 7e-04
Identities = 63/284 (22%), Positives = 116/284 (40%), Gaps = 48/284 (16%)
Query: 157 IIPSKKRHLT-----ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVS 209
II +K HL+ L +S + LT L+GP GK+T L L D +K++
Sbjct: 4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKIT 63
Query: 210 GTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARR 269
G + + G ++ Y S+ D + E+ + F Q + + +A
Sbjct: 64 GEIKFEGQNI----------YGSKMD--LVELRKEVGMVFQ---QPTPFPFSVYDNVAYG 108
Query: 270 EKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQK 329
K AG+K D ++ + + ++A + + D + D + SGGQ+
Sbjct: 109 LKIAGVK---DKELIDQRVEESLKQAAIWKE----------TKDNL--DRNAQAFSGGQQ 153
Query: 330 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389
+R+ + + +DE ++ LD ++ +I L + H + V LQ A
Sbjct: 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGR-- 211
Query: 390 DLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 433
+ D L +G ++ GP E + F PK++ +D+L
Sbjct: 212 -ISDQTAFLMNGDLIEAGPTEEM--------FIAPKKQITSDYL 246
|
Length = 251 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 7e-04
Identities = 59/257 (22%), Positives = 106/257 (41%), Gaps = 55/257 (21%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
L++V+ +KPG++ + GP SGK+TLL + D + G + +
Sbjct: 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRF----------- 374
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
HD + ++ + + +R V + ++ A G +PD
Sbjct: 375 --------HDIPLTKLQLDS---WRSRLAVVSQTPFLFSDTVANNIALG-RPD------- 415
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI--SGGQKKRVTTGEMMVGPAL 343
A E + + + +L L DT VG+ RG+ SGGQK+R++ ++ A
Sbjct: 416 -ATQQEIEHVARLASVHDDILRLPQGYDTEVGE---RGVMLSGGQKQRISIARALLLNAE 471
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------SLLQPAPETYDLFDDIIL 397
L +D+ + +D T QI++ LRQ G VI S L A +I++
Sbjct: 472 ILILDDALSAVDGRTEHQILHNLRQ---WGEGRTVIISAHRLSALTEA-------SEILV 521
Query: 398 LSDGQIVYQGPRELVLE 414
+ G I +G + + +
Sbjct: 522 MQHGHIAQRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 7e-04
Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 34/169 (20%)
Query: 896 LTALMGVSGAGKTTLM-------DVLAGRKTGGYI-----TGNITISGYPKKQETFARIS 943
+TAL+G SG GK+T + D+ G G I NI +S E RIS
Sbjct: 44 VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI-LSPEVDPIEVRMRIS 102
Query: 944 GYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV-- 1000
++ + PF +I+E++ + +R R+ ++E +E N LR + +
Sbjct: 103 MVFQKPN---PFPKSIFENVAYGLRIR------GVKRRSILEERVE----NALRNAALWD 149
Query: 1001 ----GLPGVS-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
L ++ LS Q++RL IA L +P I+ DEPTS LD A A
Sbjct: 150 EVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATA 198
|
Length = 265 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 8e-04
Identities = 44/202 (21%), Positives = 86/202 (42%), Gaps = 42/202 (20%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLL--LALAGKLDPTLKVSGTVTYNGHDM-----D 220
LK+++ I +T ++GP GK+T + L L ++ P +K++G + YNG ++ D
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
++ + Q N + ++ + +A+ R G + + L E+ EK+
Sbjct: 88 LVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKK-LQEIV--EKS-------- 135
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
+K +A D D + + +SGGQ++R+ +
Sbjct: 136 ----LKDVAL-----------------WDEVKDRLHTQAL--SLSGGQQQRLCIARALAT 172
Query: 341 PALALFMDEISTGLDSSTTFQI 362
L MDE ++ LD +T +I
Sbjct: 173 NPDVLLMDEPTSALDPVSTRKI 194
|
Length = 259 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 9e-04
Identities = 58/241 (24%), Positives = 91/241 (37%), Gaps = 41/241 (17%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
+LK ++ + PG + L+GP SGK+T+ L PT G V +G
Sbjct: 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVP-------- 544
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
+ Q+D+H V VG + + R A G+ PD ++
Sbjct: 545 ----LVQYDHHYLHRQVA----------LVGQEPVLFSGSVRENIAYGLTDTPDEEI--M 588
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346
A A + I DT VG E +SGGQK+R+ +V L
Sbjct: 589 AAAKAANAHDFIM-------EFPNGYDTEVG-EKGSQLSGGQKQRIAIARALVRKPRVLI 640
Query: 347 MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 406
+DE ++ LD+ L Q + V+ + T + D I++L G +V
Sbjct: 641 LDEATSALDAE-----CEQLLQESRSRASRTVLLIAHRLS-TVERADQILVLKKGSVVEM 694
Query: 407 G 407
G
Sbjct: 695 G 695
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 9e-04
Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 32/196 (16%)
Query: 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYC 946
VS + G A++G +GAGKTTL+++L ++ G I I G T
Sbjct: 354 VSFEAKAGQTVAIVGPTGAGKTTLINLL--QRVYDPTVGQILIDGIDINTVT-------- 403
Query: 947 EQNDIHSPFVTIYESL-LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ-------- 997
+ + T+++ LF+ +R + + E +EV E +
Sbjct: 404 -RESLRKSIATVFQDAGLFNRSIRENIRLGREGATD--EEVYEAAKAAAAHDFILKRSNG 460
Query: 998 --SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055
+LVG G + LS +R+RL IA ++ N I+ +DE TS LD A V+N +D
Sbjct: 461 YDTLVGERG-NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEA----RVKNAID 515
Query: 1056 T---GRTVVCTIHQPS 1068
RT H+ S
Sbjct: 516 ALRKNRTTFIIAHRLS 531
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 0.001
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 28/116 (24%)
Query: 303 LKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSS 357
L++LGL AD + +SGG+++RV ++ ALA L +DE ++ LD +
Sbjct: 82 LELLGLAHLADRPFNE-----LSGGERQRV-----LLARALAQEPPILLLDEPTSHLDIA 131
Query: 358 TTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL------FDDIILLSDGQIVYQG 407
+++ LR+ + G V+ +L +DL D +ILL DG+IV QG
Sbjct: 132 HQIELLELLRR-LARERGKTVVMVL------HDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 45/194 (23%), Positives = 85/194 (43%), Gaps = 28/194 (14%)
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT-TGEMMVGPALAL 345
A+ + EA + +YL +GLD D+ + + G+SGGQK+RV G + + P + +
Sbjct: 144 ALGVKKSEAKKLAKFYLNKMGLD---DSYL-ERSPFGLSGGQKRRVAIAGILAIQPEILI 199
Query: 346 FMDEISTGLD---SSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
F DE + GLD Q++ + N V + ++ D++I++ G+
Sbjct: 200 F-DEPTAGLDPKGEHEMMQLILDAKAN-----NKTVFVITHTMEHVLEVADEVIVMDKGK 253
Query: 403 IVYQG-PRELVL--EFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFV--T 457
I+ G P E+ S + P+ V + ++ + +K Y+ T
Sbjct: 254 ILKTGTPYEIFTDQHIINSTSIQVPR---VIQVINDLIKKD------PKYKKLYQKQPRT 304
Query: 458 VQEFAEAFQSFHVG 471
+++ A+A F G
Sbjct: 305 IEQLADAINEFIKG 318
|
Length = 320 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 53/245 (21%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
L D+S + G++ L+G +GK+TLL L+G P +G++ +G +M F
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEM-RFASTTA 75
Query: 228 A-----AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
A A I Q + + EMTV E L L +L + GI
Sbjct: 76 ALAAGVAIIYQELHLVPEMTVAENL--------------YLGQLPHK---GGI------- 111
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
V + + E +E L+ LG+D+ DT + +S GQ++ V + + A
Sbjct: 112 VNRRLLNYEARE-------QLEHLGVDIDPDTPLKY-----LSIGQRQMVEIAKALARNA 159
Query: 343 LALFMDEISTGLDSSTT---FQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399
+ DE ++ L + F+++ LR G ++ + E + L D I +
Sbjct: 160 RVIAFDEPTSSLSAREIEQLFRVIRELRAE-----GRVILYVSHRMEEIFALCDAITVFK 214
Query: 400 DGQIV 404
DG+ V
Sbjct: 215 DGRYV 219
|
Length = 501 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 169 KDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTY 214
+DVS + PG + ++G SGKTTLL ++G+L P +GTVTY
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTY 65
|
Length = 258 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 162 KRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE 221
+L +VS I G + ++G SGK+TLL L G PT SG V +NG M +
Sbjct: 19 SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSK 75
|
Length = 233 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 45/202 (22%), Positives = 77/202 (38%), Gaps = 42/202 (20%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHD-----MD 220
L D+S + ++T L+GP GK+T L L L P +V G + +G + +D
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+R + Q N + ++ E +A+ R GV + + + R + A +
Sbjct: 82 VVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNGVKDKAYLAERVERSLRHAAL----- 135
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
D D + E G+SGGQ++R+ +
Sbjct: 136 ---------------------------WDEVKDRL--HESALGLSGGQQQRLCIARALAV 166
Query: 341 PALALFMDEISTGLDSSTTFQI 362
L MDE ++ LD T +I
Sbjct: 167 EPEVLLMDEPASALDPIATQKI 188
|
Length = 253 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 59/251 (23%), Positives = 91/251 (36%), Gaps = 65/251 (25%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR- 226
L +VS I G + L+G +GKTTLL L G T SG + ++G D+ ++ +
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKI 77
Query: 227 ---TAAYISQHDNHIGEMTVRETLA---FSARCQGVGTRYEMLTEL-----ARREKAAGI 275
A + + MTV E LA F A R + + EL RR + AG
Sbjct: 78 MREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAG- 136
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG 335
TM SGG+++ + G
Sbjct: 137 --------------------------------------TM---------SGGEQQMLAIG 149
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395
++ L +DE S GL QI + + Q G + + Q A + L D
Sbjct: 150 RALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQ--LREQGMTIFLVEQNANQALKLADRG 207
Query: 396 ILLSDGQIVYQ 406
+L +G +V +
Sbjct: 208 YVLENGHVVLE 218
|
Length = 237 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.001
Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 15/205 (7%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET---FA 940
LNGVS + G +++G +G+GK+T ++ G G + I G E
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAENVWNLR 80
Query: 941 RISGYCEQN-DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
R G QN D T+ + + F + P + R +DE + V + +
Sbjct: 81 RKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR---VDEALLAVNMLDFKTR- 136
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
+ LS Q++R+ +A + P II +DE TS LD +MR + + +
Sbjct: 137 ----EPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQL 192
Query: 1060 VVCTIHQPSIDIFEAFDELFLMKRG 1084
V +I +D + D + +MK G
Sbjct: 193 TVLSITH-DLDEAASSDRILVMKAG 216
|
Length = 277 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 29/166 (17%)
Query: 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYITGNITISGYPKKQETFARISGY 945
G+ + ++G +G GKTT + +LAG G T+S P+
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQY---------- 69
Query: 946 CEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 1005
I + + LL S D T F E+ + +++ + V
Sbjct: 70 -----IKADYEGTVRDLLSSI------TKDFYTHPYFKTEIAKPLQIEQILDREV----- 113
Query: 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
LS + +R+ IA L + I +DEP++ LD + + +R
Sbjct: 114 PELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR 159
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 899 LMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY---------PKKQETFARISGYCEQN 949
L+G SGAGK++L+ VL + +G + I+G K R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90
Query: 950 DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN------PLRQSLVGLP 1003
P +T+ ++L+ A R+ + + ++++E + L PL
Sbjct: 91 YNLWPHLTVQQNLI-EAPCRVL-GLSKDQALARAEKLLERLRLKPYADRFPLH------- 141
Query: 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1063
LS Q++R+ IA L+ P ++ DEPT+ LD A ++ +R +TG T V
Sbjct: 142 ----LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIV 197
Query: 1064 IHQ 1066
H+
Sbjct: 198 THE 200
|
Length = 242 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 57/211 (27%), Positives = 78/211 (36%), Gaps = 53/211 (25%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNG---HDMDE 221
L+IL V V+K G L+G SGK+TLL LAG D + SG V+ G H MDE
Sbjct: 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDE 79
Query: 222 FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYE------MLTELARREKAAGI 275
R R + VG ++ L L E A +
Sbjct: 80 --EARAK----------------------LRAKHVGFVFQSFMLIPTLNALENVELPALL 115
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG 335
+ + A A L+ LGL D + +SGG+++RV
Sbjct: 116 RGESSRQSRNGAKA------------LLEQLGLGKRLDHLPAQ-----LSGGEQQRVALA 158
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCL 366
G LF DE + LD T +I + L
Sbjct: 159 RAFNGRPDVLFADEPTGNLDRQTGDKIADLL 189
|
Length = 228 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 66/244 (27%), Positives = 100/244 (40%), Gaps = 34/244 (13%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T+L + +KPG + ++GP SGKTTLL + P +GT+ +D
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITID----- 68
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
TA +SQ I ++ Q VG ++ R I P V +
Sbjct: 69 -TARSLSQQKGLIRQLR-----------QHVGFVFQNFNLFPHRTVLENIIEGP---VIV 113
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM-VGPALA 344
K E EA L +GL R +SGGQ++RV + + P +
Sbjct: 114 KGEPKE--EATARARELLAKVGL-----AGKETSYPRRLSGGQQQRVAIARALAMRPEVI 166
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
LF DE ++ LD +++N +RQ + T VI + D+ D I + G+IV
Sbjct: 167 LF-DEPTSALDPELVGEVLNTIRQ-LAQEKRTMVI-VTHEMSFARDVADRAIFMDQGRIV 223
Query: 405 YQGP 408
QGP
Sbjct: 224 EQGP 227
|
Length = 250 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 56/204 (27%), Positives = 87/204 (42%), Gaps = 32/204 (15%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-------RKTGGYITGNITISGYPKKQ 936
LN +S + G TAL+G +G+GK+T+ ++ G + IT+ G
Sbjct: 23 LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS------KITVDGITLTA 76
Query: 937 ETFARIS---GYCEQNDIHSPFV--TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 991
+T I G QN + FV T+ + + F R P E K+ + +V+ V
Sbjct: 77 KTVWDIREKVGIVFQNP-DNQFVGATVGDDVAFGLENRAVPR--PEMIKI-VRDVLADVG 132
Query: 992 LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
+ S + LS Q++R+ IA L P II +DE TS LD +++ +R
Sbjct: 133 MLDYIDS-----EPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIR 187
Query: 1052 N-TVDTGRTVVCTIHQPSIDIFEA 1074
TV+ H DI EA
Sbjct: 188 KLKKKNNLTVISITH----DIDEA 207
|
Length = 282 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 56/257 (21%), Positives = 105/257 (40%), Gaps = 52/257 (20%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHDM----DE 221
LK ++ I ++T L+GP GK+TLL L L +K++G +T +G D+ D
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 222 FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
+ + Q N M++ E +A+ R QG+ + + + R + A + ++
Sbjct: 79 ADLRIKVGMVFQKPNPF-PMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALW--DEV 135
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGP 341
+K+ A G+SGGQ++R+ +
Sbjct: 136 KDRLKSHAF--------------------------------GLSGGQQQRLCIARTIAME 163
Query: 342 ALALFMDEISTGLDSSTTFQI---VNCLRQNIHINSGTAVISLLQPAPETYD-----LFD 393
+ MDE ++ LD T +I + L++N I V +Q A D L
Sbjct: 164 PDVILMDEPTSALDPIATHKIEELMEELKKNYTI---VIVTHSMQQARRISDRTAFFLMG 220
Query: 394 DIILLSDGQIVYQGPRE 410
+++ D Q+++ P++
Sbjct: 221 ELVEHDDTQVIFSNPKD 237
|
Length = 249 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 49/210 (23%), Positives = 82/210 (39%), Gaps = 46/210 (21%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPTLKVSGTVTYNGHDM-----D 220
L D++ I R+T L+GP GK+TLL L P +++G + YNG ++ D
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 221 EFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
+R + Q N + ++ E +A+ R G + K
Sbjct: 82 VVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE------------KNKK-------- 120
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGL-DVCADTMVGDEMIRGISGGQKKRVTTGEMM- 338
+ I + LK L D D + + +SGGQ++R+ +
Sbjct: 121 -------------TLDTIVEKSLKGAALWDEVKDRL--HDSALSLSGGQQQRLCIARTLA 165
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQ 368
V P + L MDE + LD T +I + +
Sbjct: 166 VNPEVIL-MDEPCSALDPIATAKIEDLIED 194
|
Length = 253 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.002
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 19/99 (19%)
Query: 325 SGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLR--QNIH------INSG 375
SGGQ++R+ ++ P L L +DE ++ LD S Q+++ LR Q H I+
Sbjct: 428 SGGQRQRIAIARALILKPELIL-LDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHD 486
Query: 376 TAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
AV+ L +I++ DG+IV QGP E V
Sbjct: 487 LAVVRALC---------HRVIVMRDGKIVEQGPTEAVFA 516
|
Length = 534 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 55/253 (21%), Positives = 103/253 (40%), Gaps = 7/253 (2%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
+LK++S I+ G + +LG +GK+ L+ L G +D SG + Y+ ++
Sbjct: 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRG-MDQYEPTSGRIIYHVALCEKCGY 71
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY 284
+ + + G E + F + R + + A D +D
Sbjct: 72 VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNV 131
Query: 285 MKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344
++A+ G E + ++ + + + + R +SGG+K+RV +
Sbjct: 132 LEALEEIGYEGKEAVGRAVDLIEMVQLSHRIT--HIARDLSGGEKQRVVLARQLAKEPFL 189
Query: 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY-DLFDDIILLSDGQI 403
DE + LD T + N L + + + + V++ PE DL D I L +G+I
Sbjct: 190 FLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT--SHWPEVIEDLSDKAIWLENGEI 247
Query: 404 VYQG-PRELVLEF 415
+G P E+V F
Sbjct: 248 KEEGTPDEVVAVF 260
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+LKD+S IKPG L+ GP +GK++L ALAG L P SG + + F+PQ
Sbjct: 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG-LWPW--GSGRIGMPEGEDLLFLPQ 71
Query: 226 R 226
R
Sbjct: 72 R 72
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 65/282 (23%), Positives = 96/282 (34%), Gaps = 83/282 (29%)
Query: 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYIS 232
G I + +LGP GKTT + LAG L P + D + T +Y
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPD------------EGDIEIELDTVSYKP 67
Query: 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEG 292
Q+ E TVR+ L S+ + T TE+ KP
Sbjct: 68 QYIKADYEGTVRDLL--SSITKDFYTHPYFKTEI--------AKP--------------- 102
Query: 293 QEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIST 352
L ++ D V + +SGG+ +RV + A +DE S
Sbjct: 103 -------------LQIEQILDREVPE-----LSGGELQRVAIAACLSKDADIYLLDEPSA 144
Query: 353 GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII---LLSDGQIVYQG-P 408
LD +R+ N TA + + DII L+D IV++G P
Sbjct: 145 YLDVEQRLMASKVIRRFAENNEKTAFV-----------VEHDIIMIDYLADRLIVFEGEP 193
Query: 409 RELVLEFFASMGFRCP---KRKGVADFLQE--VTSRKDQRQY 445
+ G P R G+ FL+ +T R+D
Sbjct: 194 --------SVNGVANPPQSLRSGMNRFLKNLDITFRRDPETG 227
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.002
Identities = 56/207 (27%), Positives = 83/207 (40%), Gaps = 52/207 (25%)
Query: 877 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936
LE K VLL VS + G LT ++G +G+GK+TL+ L IS +
Sbjct: 670 LEPK-VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSL---------LSQFEIS----EG 715
Query: 937 ETFARIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDE-----VMELV 990
+A S Y Q AW+ ++ V +F DE + + V
Sbjct: 716 RVWAERSIAYVPQQ----------------AWI-MNATVRGNI--LFFDEEDAARLADAV 756
Query: 991 ELNPLRQSLVGLPGVSGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLD 1039
++ L L L G GL TE Q+ R+++A + AN + +D+P S LD
Sbjct: 757 RVSQLEADLAQLGG--GLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814
Query: 1040 ARAAAIVMRTVRNTVDTGRTVVCTIHQ 1066
A V+ G+T V HQ
Sbjct: 815 AHVGERVVEECFLGALAGKTRVLATHQ 841
|
Length = 1560 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.002
Identities = 52/216 (24%), Positives = 97/216 (44%), Gaps = 32/216 (14%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNITISGYPKKQETFAR 941
LNG++ + G L A++G G GK++L+ L K G++ +++ P++ A
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQ----AW 709
Query: 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL---RQS 998
I QND ++ E++LF L + + + ++ L +L L ++
Sbjct: 710 I-----QND------SLRENILFGKAL------NEKYYQQVLEACALLPDLEILPSGDRT 752
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT--VDT 1056
+G GV+ LS Q++R+++A + +N I D+P S +DA + V V
Sbjct: 753 EIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLK 811
Query: 1057 GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092
+T + H I D + +M GG+ +G
Sbjct: 812 NKTRILVTH--GISYLPQVDVIIVMS-GGKISEMGS 844
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.002
Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 16/159 (10%)
Query: 896 LTALMGVSGAGKTTLM-------DVLAGRKTGG--YITGNITISGYPKKQETFARISGYC 946
+TA +G SG GK+T + D++ G G Y G T S E RI
Sbjct: 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVF 169
Query: 947 EQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 1005
++ +PF ++I++++ + R + D + + +++ ++ L + + G
Sbjct: 170 QKP---TPFEMSIFDNVAYGP--RNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAG- 223
Query: 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
+ LS Q++RL IA + P ++ MDEPTS LD A A
Sbjct: 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATA 262
|
Length = 329 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQ 1066
LS Q++RL IA L P ++ MDEP GLD A+ V +++ + + T+V H
Sbjct: 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHN 210
Query: 1067 -PSIDIFEAFDELF 1079
+ F F
Sbjct: 211 LHQVSRLSDFTAFF 224
|
Length = 261 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1052
LS Q++RL IA + P+++ MDEP S LD A ++ ++
Sbjct: 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE 194
|
Length = 251 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQ 1066
LS Q++R+ IA + P II +DE TS LD +++T++ D TV+ H
Sbjct: 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITH- 199
Query: 1067 PSIDIFEAFDELFLMKRGGQE 1087
+D D + +MK G E
Sbjct: 200 -DLDEVALSDRVLVMKNGQVE 219
|
Length = 279 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 324 ISGGQKKRV-TTGEMMVGPALALF-MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL 381
+SGG+ +RV E+ P LF +DE STGL Q++ ++ I+ G VI L
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKG--LIDLGNTVI-L 144
Query: 382 LQPAPETYDLFDDIILL------SDGQIVYQG 407
++ + D II S G++V+ G
Sbjct: 145 IEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVT 213
L DV+ I G ++G SGK+TLL L G L PT SGTVT
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVT 65
|
Length = 290 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 59/254 (23%), Positives = 102/254 (40%), Gaps = 40/254 (15%)
Query: 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-PTLKVSGTVTY 214
R PS + + +LK +S I G + ++G SGK+TL+ L G LD PT SGT
Sbjct: 12 RSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNIL-GCLDKPT---SGTYRV 67
Query: 215 NGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
G D+ A +H I + RY +L+ L +
Sbjct: 68 AGQDVATLDADALAQLRREHFGFIFQ------------------RYHLLSHLTAAQNV-- 107
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334
++ + + + L+ LGL+ + +SGGQ++RV+
Sbjct: 108 -----EVPAVYAGLERKQRLLRAQE--LLQRLGLEDRVEYQPSQ-----LSGGQQQRVSI 155
Query: 335 GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394
++ + DE + LDS + +++ L Q + G VI ++ P+ +
Sbjct: 156 ARALMNGGQVILADEPTGALDSHSGEEVMAILHQ--LRDRGHTVI-IVTHDPQVAAQAER 212
Query: 395 IILLSDGQIVYQGP 408
+I + DG+IV P
Sbjct: 213 VIEIRDGEIVRNPP 226
|
Length = 648 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 34/175 (19%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGRKTGGYIT---GNITISGYP 933
L ++ +TA +G SG GK+TL+ ++ G I NI
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 934 KKQETFARISGYCEQNDIHSPF-VTIYESLLFSAWL--RLS-PEVDSE-----TRKMFID 984
A++ G Q +PF ++IY+++ F L +LS E+D T+ +
Sbjct: 89 IAL-LRAKV-GMVFQKP--TPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWN 144
Query: 985 EVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
EV + L QS G LS Q++RL IA + P ++ +DEP S LD
Sbjct: 145 EVK-----DKLHQS--GY----SLSGGQQQRLCIARGIAIRPEVLLLDEPCSALD 188
|
Length = 260 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 63/226 (27%), Positives = 101/226 (44%), Gaps = 43/226 (19%)
Query: 884 LNGVSGAFRPG--VLT------------ALMGVSGAGKTTLMDVLAGRKTGGYIT---GN 926
++ VS A+R VL AL+G +G+GK+TL +L G Y G
Sbjct: 343 IDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMG-----YYPLTEGE 397
Query: 927 ITISGYPKKQETFA--RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFID 984
I + G P + + R Q D P V + ++ L A + L ++ E +
Sbjct: 398 IRLDGRPLSSLSHSVLRQGVAMVQQD---P-VVLADTFL--ANVTLGRDISEEQ----VW 447
Query: 985 EVMELVELNPLRQSLV-GLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038
+ +E V+L L +SL GL G LS Q++ L +A LV P I+ +DE T+ +
Sbjct: 448 QALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANI 507
Query: 1039 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
D+ + + + V T+V H+ S I EA D + ++ RG
Sbjct: 508 DSGTEQAIQQALA-AVREHTTLVVIAHRLST-IVEA-DTILVLHRG 550
|
Length = 592 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.003
Identities = 51/183 (27%), Positives = 79/183 (43%), Gaps = 46/183 (25%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGYPKKQETFARI 942
+ G+ G L+G SG GK+TL+ ++AG + IT G I I G R+
Sbjct: 20 IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGG---------RV 67
Query: 943 SGYCE----------QNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVEL 992
E QN P +++ E++ + +R P+ + E R + E ++EL
Sbjct: 68 VNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEER---VAEAARILEL 124
Query: 993 NPL-----RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAI 1045
PL R+ LS QR+R+ + +V P++ DEP S LDA R
Sbjct: 125 EPLLDRKPRE----------LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQ-- 172
Query: 1046 VMR 1048
MR
Sbjct: 173 -MR 174
|
Length = 356 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.003
Identities = 63/247 (25%), Positives = 104/247 (42%), Gaps = 59/247 (23%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
L +++ + G L ++G GKT+L+ A+ G+L P +V G T
Sbjct: 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPR--SDASVVIRG----------T 680
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKA 287
AY+ Q + I TVR+ + F G+ ++ R E+A IDV
Sbjct: 681 VAYVPQV-SWIFNATVRDNILF-------GSPFDP----ERYERA--------IDV---- 716
Query: 288 IATEGQEANVITDYYLKVL-GLDVCADTMVGDEMIRG--ISGGQKKRVTTGEMMVGPALA 344
T Q L +L G D+ T +G+ RG ISGGQK+RV+ + +
Sbjct: 717 --TALQHD-------LDLLPGGDL---TEIGE---RGVNISGGQKQRVSMARAVYSNSDV 761
Query: 345 LFMDEISTGLDSSTTFQIVN-CLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
D+ + LD+ Q+ + C++ + + V + L + D IIL+ +G I
Sbjct: 762 YIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQV----DRIILVHEGMI 817
Query: 404 VYQGPRE 410
+G E
Sbjct: 818 KEEGTYE 824
|
Length = 1622 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 0.004
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 22/88 (25%)
Query: 324 ISGGQKKRVTTGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINS 374
+SGGQ++R+ A+A L +DE ++ LD T I+ LR
Sbjct: 97 LSGGQRQRI---------AIARALLRDPPILILDEATSALDPETEALILEALRALAK-GK 146
Query: 375 GTAVISLLQPAPETYDLFDDIILLSDGQ 402
VI+ T D II+L DG+
Sbjct: 147 TVIVIA---HRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 318 DEMIRGISGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGT 376
D++ R SGG ++R+ +V P L +FMDE + GLD S ++++ LR + G
Sbjct: 146 DDLPRTFSGGMQQRLQIARNLVTRPRL-VFMDEPTGGLDVSVQARLLDLLR-GLVRELGL 203
Query: 377 AVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
AV+ + L D ++++ GQ+V G + VL+
Sbjct: 204 AVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLD 241
|
Length = 258 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.004
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
DVS + PG + ++G SGKTTLL AL+ +L P +G V Y D
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRD 69
|
Length = 258 |
| >gnl|CDD|222165 pfam13481, AAA_25, AAA domain | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.004
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 171 VSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202
V G++ G LTLL G P +GK+TL L LA +
Sbjct: 26 VKGLLPRGGLTLLAGAPGTGKSTLALDLAAAV 57
|
This AAA domain is found in a wide variety of presumed DNA repair proteins. Length = 154 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.004
Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 26/173 (15%)
Query: 881 LVL-LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGR---KTGGYITGNITI 929
LVL ++ S G + LMG+SG+GK+TL+ V G K G G++ +
Sbjct: 36 LVLGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGD---GSVDV 92
Query: 930 SGYPKKQETFAR---ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEV 986
+ R +S +Q + P+ T+ E++ F L + +E RK +DE
Sbjct: 93 ANCDAATLRRLRTHRVSMVFQQFAL-LPWRTVEENVAFG--LEMQGMPKAERRKR-VDEQ 148
Query: 987 MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
+ELV L G LS ++R+ +A I+ MDEP S LD
Sbjct: 149 LELVGLAQWADRKPG-----ELSGGMQQRVGLARAFATEAPILLMDEPFSALD 196
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 40.1 bits (93), Expect = 0.004
Identities = 11/54 (20%), Positives = 26/54 (48%)
Query: 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1069
L + + S++ +DEP +GL + ++ ++ + G ++ T H P +
Sbjct: 201 LLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHSPLL 254
|
Length = 256 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.004
Identities = 57/199 (28%), Positives = 86/199 (43%), Gaps = 32/199 (16%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGNITISG---YPKKQE 937
L VS +TAL+G SG GK+T + L I G ++I G Y +
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87
Query: 938 T--FARISGYCEQNDIHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 994
+ G Q +PF ++IY+++ + P + +K +D V+E N
Sbjct: 88 VVELRKNVGMVFQKP--NPFPMSIYDNVAYG------PRIHGANKKD-LDGVVE----NA 134
Query: 995 LRQSLV--------GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046
LR + + P +S LS Q++RL IA L P II DEPTS LD + A +
Sbjct: 135 LRSAALWDETSDRLKSPALS-LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARI 193
Query: 1047 MRTVRNTVDTGRTVVCTIH 1065
+ N + T+V H
Sbjct: 194 EDLIMN-LKKDYTIVIVTH 211
|
Length = 258 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1226 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-215 Score=1960.11 Aligned_cols=1115 Identities=54% Similarity=0.932 Sum_probs=1039.3
Q ss_pred cchHHhhhHHHHhhCCChhhhhhcccccCCCCcccccccccchHhhHHHHHHhhhccccChHHHHHHHHHHhhhcCCCCC
Q 000913 36 EDDEEALKWAALEKLPTYNRLRKGILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLP 115 (1226)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (1226)
+||||+|+|||++||||++| +++.+... .++|+.+++..++..+.++..+..++|+++++.+++++.+++ ++|
T Consensus 12 ~~~e~~~~~a~~~~~pt~~~---~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~--~~p 84 (1391)
T KOG0065|consen 12 DEDEEALRWAAIERLPTFDR---SLLRSIFE--SEVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDRV--ELP 84 (1391)
T ss_pred chhHHHHHHHHHhcCccccc---hhhhhhcc--CcccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCcc--cCC
Confidence 45999999999999999999 66543211 279999999999999999999999999999999999999998 889
Q ss_pred cceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHH
Q 000913 116 KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLL 195 (1226)
Q Consensus 116 ~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL 195 (1226)
.++++++++.+++++..| ||++|...+.++.++...+.. ++...+||+|+||.++||+|++++|||||||||||
T Consensus 85 ~~~~~~~~~gv~a~~~~~----~t~~n~~~~~~~~~~~~~~~~--~~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttll 158 (1391)
T KOG0065|consen 85 TIEVRFSALGVEADVTYG----PTLVNILSNPLESILRMLGKR--KKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTLL 158 (1391)
T ss_pred ceEEEeeecccccccccc----hhhhhhhhhHHHHHhhhcccc--ccccceeecCcceeEcCCceEEEecCCCCchHHHH
Confidence 999999999999998766 999999999999888766644 55668899999999999999999999999999999
Q ss_pred HHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCC
Q 000913 196 LALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI 275 (1226)
Q Consensus 196 ~~L~G~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (1226)
++|+|.++.....+|+|+|||++.+++.+++.++|++|+|.|+|+|||||||+|+++|++++.|++ +..|++++.
T Consensus 159 kal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R~e~~~-- 233 (1391)
T KOG0065|consen 159 KALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSRREKLA-- 233 (1391)
T ss_pred HHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccHHHHHH--
Confidence 999999998877889999999999999999999999999999999999999999999999998876 555655431
Q ss_pred CCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCC
Q 000913 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLD 355 (1226)
Q Consensus 276 ~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD 355 (1226)
.++|++++++||++|+||+|||+++||+||||||||+||+++++++++++|||+|+|||
T Consensus 234 ---------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLD 292 (1391)
T KOG0065|consen 234 ---------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLD 292 (1391)
T ss_pred ---------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccccccc
Confidence 36899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHH
Q 000913 356 SSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQE 435 (1226)
Q Consensus 356 s~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~ 435 (1226)
++|+.+++++||+++|..+.|.+++++||+++++++||+|++|++|+++|+||++++++||+++||.||+++++|||+++
T Consensus 293 SsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~ 372 (1391)
T KOG0065|consen 293 SSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLTE 372 (1391)
T ss_pred HHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhcCCccccchhhccccccccCCcHHHHHHHHHHHHHHH
Q 000913 436 VTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLL 515 (1226)
Q Consensus 436 v~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~ 515 (1226)
+++++++.++|..+..|+.+.++.++.+.|.+++.+.++..+++.++++.+.++.++..++|.++.|+|+++|+.|++++
T Consensus 373 vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~l 452 (1391)
T KOG0065|consen 373 VTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFLL 452 (1391)
T ss_pred hhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCcccccccchhhHHHHHHHHHHHhHHHHHHHHHhhchhhHHhhccccc
Q 000913 516 MKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFF 595 (1226)
Q Consensus 516 ~~R~~~~~~~r~~~~~~~ali~gtlf~~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y 595 (1226)
++||.+++++++++.+++|+++|++|+++.+ ++..+...+.|++||++++.+|+++++++.+++++|||+|||+..||
T Consensus 453 ~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY 530 (1391)
T KOG0065|consen 453 MKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFY 530 (1391)
T ss_pred HhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhccccc
Confidence 9999999999999999999999999999885 55677889999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHhcHHHHHHHHHHHHhhhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 000913 596 PPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFAL 675 (1226)
Q Consensus 596 ~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~ 675 (1226)
+||+|.++.+++++|+.++++++|.+|+||++||.+++++||++|+++++++++++++|++++++++++.+|+.+|++.+
T Consensus 531 ~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~ 610 (1391)
T KOG0065|consen 531 PPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILL 610 (1391)
T ss_pred ChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccCccchhHHHHHHHhHcHHHHHHHHHHHHhhcCCccccc------------cCC---Cccchhhhhhhcc
Q 000913 676 LVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKF------------TQD---SSETLGVQVLKSR 740 (1226)
Q Consensus 676 l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~------------~~~---~~~~~G~~~L~~~ 740 (1226)
+++.+++||+++..+||+||+|++|++|++|+++++++|||++.+|+|. ... ...+.|..+++.+
T Consensus 611 L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~ 690 (1391)
T KOG0065|consen 611 LVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGR 690 (1391)
T ss_pred HHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEecc
Confidence 9999999999999999999999999999999999999999999999997 111 2356789999998
Q ss_pred Ccc-----cccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCCcccccccCCCCCCCCC
Q 000913 741 GFF-----AHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTR 815 (1226)
Q Consensus 741 ~~~-----~~~~~~w~~~g~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1226)
++. ...+|+|+++|+++||+++|++++.+++.|++|..+.++++..+........... .
T Consensus 691 ~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~~----------------~ 754 (1391)
T KOG0065|consen 691 DYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKSA----------------G 754 (1391)
T ss_pred cccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchhc----------------c
Confidence 887 7889999999999999999999999999999999888887665443322110000 0
Q ss_pred CCCCCcccccccccchhhhhhhhcCCCcCCCCccCCCCceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCe
Q 000913 816 SGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGV 895 (1226)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge 895 (1226)
..... .. ..+....+++++..|+.|..++++||.|.+++|.+++.+| +++++|+||||.++||.
T Consensus 755 ~~~~~-----------~~--~~~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~ 818 (1391)
T KOG0065|consen 755 SSSEI-----------EK--LDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGV 818 (1391)
T ss_pred ccccc-----------cc--cccccccccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCCc
Confidence 00000 00 0001111355778899999999999999999999888877 67899999999999999
Q ss_pred EEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCC
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD 975 (1226)
Q Consensus 896 ~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~ 975 (1226)
++||||+||||||||||+||||+++|.++|+|.|||+|++++.|+|.+|||+|+|+|.+.+||||.|.|+|+||++.+++
T Consensus 819 LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~ 898 (1391)
T KOG0065|consen 819 LTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVS 898 (1391)
T ss_pred eeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 000913 976 SETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTV 1054 (1226)
Q Consensus 976 ~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p-~il~LDEPTsgLD~~~~~~i~~~l~~~~ 1054 (1226)
.+++.++|++|++.|||++++|.+||.|| +|||++|||||+||+||++|| .||||||||||||++++..|++++|+++
T Consensus 899 ~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla 977 (1391)
T KOG0065|consen 899 DEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLA 977 (1391)
T ss_pred HHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 999999999999999999999 8999999999999999999999999999
Q ss_pred hCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCCcchhhHHHHHHhCCCccCCCCCCCccceeeeecchhhhhh
Q 000913 1055 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELA 1134 (1226)
Q Consensus 1055 ~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~~~~~~~~~~~f~~~~~~~~~~~~~npa~~~l~~~~~~~~~~ 1134 (1226)
++|+|||||+||||.++||.||++++|++||++||+||+|++++.+++||++++|++ |++..|||||||||++.+.+..
T Consensus 978 ~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~-~~~~~NPA~~mLevi~~~~~~~ 1056 (1391)
T KOG0065|consen 978 DTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVK-CISDENPAEWMLEVIGAGAEAS 1056 (1391)
T ss_pred hcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCcc-CCCCCChHHHHHhhcccccccc
Confidence 999999999999999999999999999999999999999999999999999999875 6666699999999999988888
Q ss_pred hcCCHHHHhhccHHHHHHHHHHhhhCCCCCC-CCCCCCCCccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Q 000913 1135 LGIDFTEHYKRSDLYRRNKALIEDLSRPPPG-SKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIAL 1213 (1226)
Q Consensus 1135 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~q~~~l~~r~~~~~~R~~~~~~~r~~~~~~~~l 1213 (1226)
.+.||++.|++|++++++++++++++.++++ +.+..++++|++|+|.|++.|+||++++|||+|+|+++|++++++.||
T Consensus 1057 ~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl 1136 (1391)
T KOG0065|consen 1057 LSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGL 1136 (1391)
T ss_pred cCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999998 778888899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCC
Q 000913 1214 LFGSLFWDLGGR 1225 (1226)
Q Consensus 1214 ~~g~~~~~~g~~ 1225 (1226)
+||++||++|.+
T Consensus 1137 ~iGf~F~~~g~~ 1148 (1391)
T KOG0065|consen 1137 FIGFTFWKVGHN 1148 (1391)
T ss_pred hheeeeeecCCc
Confidence 999999999964
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-195 Score=1915.56 Aligned_cols=1203 Identities=62% Similarity=1.051 Sum_probs=1051.0
Q ss_pred cccccCCCCccccC---C----CCcchHHhhhHHHHhhCCChhhhhhcccccC-----CCC---cccccccccchHhhHH
Q 000913 19 SRWNTNSIGAFSRS---S----REEDDEEALKWAALEKLPTYNRLRKGILTTS-----RGE---ANEVDVYNLGLQERQR 83 (1226)
Q Consensus 19 ~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~ 83 (1226)
++|.. +++|++. . ..|||||+|+|||+||||||+|+|++++.+. .|+ ..|+|+++|+.++++.
T Consensus 19 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (1470)
T PLN03140 19 SSRNM--EDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQK 96 (1470)
T ss_pred hhhhh--hhhhhccchhccccccccCChHhhhhHHhhhCCchhhhhhhhhhcccccccccccccccccccccCChHHHHH
Confidence 34633 6888552 1 2578999999999999999999999999652 122 2369999999999999
Q ss_pred HHHHhhhccccChHHHHHHHHHHhhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhhcCCCcc
Q 000913 84 LIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKR 163 (1226)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 163 (1226)
+++|++++.++|+++|++++++|.+++|+++|++||+|+||+|+++++++++.+||++|.+.+.++.+.+.++...+++.
T Consensus 97 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~ 176 (1470)
T PLN03140 97 FIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKT 176 (1470)
T ss_pred HHHhhhcccchhHHHHHHHHHhhhccccCCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999888765554344556
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCCCH
Q 000913 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTV 243 (1226)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1226)
+++||+||||.++||++++|+||||||||||||+|+|+++++.+++|+|+|||+++++..+++.++||+|+|.|++++||
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 78899999999999999999999999999999999999998777899999999998877677889999999999999999
Q ss_pred HHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 000913 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1226)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1226)
+|||.|+++|++.+.++++..+..+++++.++.|+.++|.+|++.+.++.+.+..++.+|+.+||++|+||.||++++++
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 99999999998776666555566677777777888889999999888888888899999999999999999999999999
Q ss_pred CChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeE
Q 000913 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1226)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1226)
|||||||||+||++|+++|+++||||||+|||+.++.++++.|+++++..+.|+|+++|||.++++++||+|++|++|++
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~i 416 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQI 416 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceE
Confidence 99999999999999999999999999999999999999999999998766889999999999999999999999999999
Q ss_pred EEecChhHHHHHHHhcCCCCCCCCChHHHHHHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhcCCcc
Q 000913 404 VYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFD 483 (1226)
Q Consensus 404 v~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~~~~~~~l~~~~~ 483 (1226)
+|+||++++.+||+++||+||+++++|||+++++++++++++|.....|+++.++++++++|++++.++.+.+++..|.+
T Consensus 417 vy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 496 (1470)
T PLN03140 417 VYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFD 496 (1470)
T ss_pred EEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999988888887766777888999999999999999888888777766
Q ss_pred ccchhhccccccccCCcHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCcccccccchhhHHHH
Q 000913 484 KSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFF 563 (1226)
Q Consensus 484 ~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~ali~gtlf~~~~~~~~~~~~~~~~~g~lff 563 (1226)
+...++.....++|..++++|+++|++|++++++||+.++++|+++.+++|+++|++|++++.+.....++..+.|++||
T Consensus 497 ~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff 576 (1470)
T PLN03140 497 KSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLF 576 (1470)
T ss_pred hhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHH
Confidence 65556665666779999999999999999999999999999999999999999999999987665555567788999999
Q ss_pred HHHHHHHhHHHHHHHHHhhchhhHHhhcccccChhhHHHHHHHHHhcHHHHHHHHHHHHhhhcccCcCchhHHHHHHHHH
Q 000913 564 AITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALL 643 (1226)
Q Consensus 564 ~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~l~~ 643 (1226)
++++.+++++++++.++.++|||+|||+.+||++|+|++|++++++|+.++++++|++|+|||+||++++++||.|++++
T Consensus 577 ~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~ 656 (1470)
T PLN03140 577 SMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLV 656 (1470)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHhHcHHHHHHHHHHHHhhcCCcccc
Q 000913 644 LGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKK 723 (1226)
Q Consensus 644 ~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~ 723 (1226)
++++++++++|++++++++++.+|+.+++++++++++|+||++++++||+||+|++|+||++|+++|+++|||.+..|.+
T Consensus 657 ~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~ 736 (1470)
T PLN03140 657 FLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMN 736 (1470)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988864
Q ss_pred cc-CCCccchhhhhhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCCccc
Q 000913 724 FT-QDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQ 802 (1226)
Q Consensus 724 ~~-~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1226)
.. .+...+.|.++|+.+|+..++.|+|+++++|++|+++|+++++++++|.++......++..+...............
T Consensus 737 ~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1470)
T PLN03140 737 KMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRS 816 (1470)
T ss_pred cccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhccccccccc
Confidence 32 23346789999999999999999999999999999999999999999999766655554222111000000000000
Q ss_pred ccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCcCCCCccCCCCceeEEeceeeEEeccchhhhcccccCceE
Q 000913 803 LSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLV 882 (1226)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~ 882 (1226)
.....+..........+..... .... .............++++.+|+.|..++|+||+|.++.+..++..+..++++.
T Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~ 894 (1470)
T PLN03140 817 LSSADGNNTREVAIQRMSNPEG-LSKN-RDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQ 894 (1470)
T ss_pred cccccccccccccccccccccc-cccc-cccccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCce
Confidence 0000000000000000000000 0000 0000000001123456677899999999999999998776554444455678
Q ss_pred EeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHH
Q 000913 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESL 962 (1226)
Q Consensus 883 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l 962 (1226)
+|+|||++++||+++||||||||||||||++|+|+.++|..+|+|.+||.+..+..+++.+|||+|+|.+++.+||+|+|
T Consensus 895 iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L 974 (1470)
T PLN03140 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESL 974 (1470)
T ss_pred EeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHH
Confidence 99999999999999999999999999999999999877778999999999876556777899999999999999999999
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 000913 963 LFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1042 (1226)
Q Consensus 963 ~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~ 1042 (1226)
.|++.+|.+...+.++++++++++++.++|.+++|+.+|.+++++|||||||||+||++|+.+|+||||||||+|||+.+
T Consensus 975 ~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~ 1054 (1470)
T PLN03140 975 IYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1054 (1470)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Confidence 99998887666666777788999999999999999999988888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCCcchhhHHHHHHhCCCccCCCCCCCccce
Q 000913 1043 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATW 1122 (1226)
Q Consensus 1043 ~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~~~~~~~~~~~f~~~~~~~~~~~~~npa~~ 1122 (1226)
+..+++.|++++++|+|||||+|||+.++++.||++++|++||+++|+||.+++++++++||++++|+++||+++|||||
T Consensus 1055 a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~ 1134 (1470)
T PLN03140 1055 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATW 1134 (1470)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhh
Confidence 99999999999988999999999999888999999999998899999999999999999999999888889999999999
Q ss_pred eeeecchhhhhhhcCCHHHHhhccHHHHHHHHHHhhhCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHHHhcChHHHH
Q 000913 1123 MLEVSAASQELALGIDFTEHYKRSDLYRRNKALIEDLSRPPPGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTA 1202 (1226)
Q Consensus 1123 ~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~r~~~~~~R~~~~~~ 1202 (1226)
|||+++...+...+.||++.|++|++++++++.++++..+.+...+..++++|++++++|+++|+||+++++||||.|++
T Consensus 1135 ~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~ 1214 (1470)
T PLN03140 1135 MLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNL 1214 (1470)
T ss_pred hhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHH
Confidence 99999876655556799999999999999888888887776666666667889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCC
Q 000913 1203 VRFFFTAFIALLFGSLFWDLGGR 1225 (1226)
Q Consensus 1203 ~r~~~~~~~~l~~g~~~~~~g~~ 1225 (1226)
+|+++++++||++|++||++|++
T Consensus 1215 ~r~~~~i~~al~~G~~f~~~~~~ 1237 (1470)
T PLN03140 1215 VRFFFTLAAALMVGTIFWKVGTK 1237 (1470)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCC
Confidence 99999999999999999999864
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-154 Score=1535.22 Aligned_cols=1069 Identities=33% Similarity=0.550 Sum_probs=866.0
Q ss_pred cChHHHHHHHHHHhhhcCCCCC--cceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhhcCCCcccceEeece
Q 000913 94 VDNERFLLKLKNRIDRVGIDLP--KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDV 171 (1226)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~v 171 (1226)
.|.+++++.++++.++.+...| +++|+|+||+|++ ...+....||++|.+.+.+..+...+. ..+++++++||+||
T Consensus 3 f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~iL~~v 80 (1394)
T TIGR00956 3 FNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTRGFRKLK-KFRDTKTFDILKPM 80 (1394)
T ss_pred CCHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEE-EeccccccCchHHHHHHHHHHHHHHhc-ccCCCCcceeeeCC
Confidence 4667777765555555555555 9999999999999 445666789999998887765443331 12344567899999
Q ss_pred eEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CceeEEEEcCccCCCCC--ccceEEEecCCCCCCCCCCHHHHHH
Q 000913 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL-KVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTVRETLA 248 (1226)
Q Consensus 172 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1226)
|+.++|||+++|+||||||||||||+|+|+.++.. ..+|+|.+||.++++.. .++.++||+|+|.|++.+||+|||.
T Consensus 81 s~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~ 160 (1394)
T TIGR00956 81 DGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLD 160 (1394)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHH
Confidence 99999999999999999999999999999974211 24999999999875432 2456999999999999999999999
Q ss_pred HHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhH
Q 000913 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1226)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1226)
|+++++.+...... ..+.+ ..+..++.+++.+||++++||.||++.+++|||||
T Consensus 161 f~~~~~~~~~~~~~---~~~~~-----------------------~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 214 (1394)
T TIGR00956 161 FAARCKTPQNRPDG---VSREE-----------------------YAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGE 214 (1394)
T ss_pred HHHHhCCCCCCCCC---CCHHH-----------------------HHHHHHHHHHHHcCcccccCceeCCCcCCCCCccc
Confidence 99887643211000 00000 01123567899999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEEEecC
Q 000913 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (1226)
Q Consensus 329 rqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~ 408 (1226)
||||+||++|+.+|+++||||||+|||+.++.++++.|+++++..+.|+|+++|||+++++++||+|++|++|+++|+|+
T Consensus 215 rkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~ 294 (1394)
T TIGR00956 215 RKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGP 294 (1394)
T ss_pred chHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECC
Confidence 99999999999999999999999999999999999999999875678999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCCCCCCChHHHHHHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhcCCcccc---
Q 000913 409 RELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKS--- 485 (1226)
Q Consensus 409 ~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~~~~~~~l~~~~~~~--- 485 (1226)
++++.+||+++||.||++.++|||+.+++++.+. +++...+. ....+.++++++|++++.++++..+++.+.++.
T Consensus 295 ~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~-~~~~~~e~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 372 (1394)
T TIGR00956 295 ADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAER-QIKPGYEK-KVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSES 372 (1394)
T ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHhccChhhh-hccccccc-cCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccch
Confidence 9999999999999999999999999999987542 22211111 123578899999999987776666554322110
Q ss_pred ------------chhhccccccccCCcHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCccccc
Q 000913 486 ------------KSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTD 553 (1226)
Q Consensus 486 ------------~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~ali~gtlf~~~~~~~~~~~~ 553 (1226)
...+.......|..++|+|+++|++|+++.++||+..++.++++.+++|+++|++|++.+.+. .+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~---~~ 449 (1394)
T TIGR00956 373 DTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNT---SD 449 (1394)
T ss_pred hhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCc---hh
Confidence 000011223468889999999999999999999999999999999999999999999765432 34
Q ss_pred ccchhhHHHHHHHHHHHhHHHHHHHHHhhchhhHHhhcccccChhhHHHHHHHHHhcHHHHHHHHHHHHhhhcccCcCch
Q 000913 554 GGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNA 633 (1226)
Q Consensus 554 ~~~~~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~ 633 (1226)
.+.+.|++||++++.++.++.+++.++.+|++|+|||..++|++++|++|+.+.++|+.++.+++|++|+|||+||.+++
T Consensus 450 ~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~ 529 (1394)
T TIGR00956 450 FYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTA 529 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHhHcHHHHHHHHHHH
Q 000913 634 GRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVA 713 (1226)
Q Consensus 634 ~~f~~~~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~ 713 (1226)
++||.|+++++++.+++.+++++++++++++.+|+.+++++++++++|+||+++.++||+||+|++|+||+.|+++|++.
T Consensus 530 ~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~ 609 (1394)
T TIGR00956 530 GRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMV 609 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCcccccc--C----------------------CCccchhhhhhhccCcccccchhHHHHHHHHHHHHHHHHHHHH
Q 000913 714 NEFLGHSWKKFT--Q----------------------DSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTL 769 (1226)
Q Consensus 714 nef~~~~~~~~~--~----------------------~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~~~~~~f~~~~~l 769 (1226)
|||.+..+.|.. | +.....|.++|+. ++.....|.|.+++++++|+++|.+++++
T Consensus 610 nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil~~~~v~f~~~~~l 688 (1394)
T TIGR00956 610 NEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFVYIL 688 (1394)
T ss_pred hhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 999998887741 1 1123578889985 44445678999999999999999999999
Q ss_pred HHHhcCCCCCCcceeeccccccccccccCCcccccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCcCCCCcc
Q 000913 770 ALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVL 849 (1226)
Q Consensus 770 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (1226)
++.|.++......++............... .........++..... ......+... .......
T Consensus 689 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~e~~~~~~-----~~~~~~~~~~-~~~~~~~ 751 (1394)
T TIGR00956 689 LTEFNKGAKQKGEILVFRRGSLKRAKKAGE-----------TSASNKNDIEAGEVLG-----STDLTDESDD-VNDEKDM 751 (1394)
T ss_pred HHHhccccCCCCceEeeccccccchhhccc-----------ccccccccccccccCC-----CCcccccccc-ccccccc
Confidence 999988654443332211100000000000 0000000000000000 0000000000 0000000
Q ss_pred C--CCCceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCc-eEEEE
Q 000913 850 P--FEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGN 926 (1226)
Q Consensus 850 ~--~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~~~G~ 926 (1226)
| .....++|+||+|.++.+ .+++.+|+|||++++|||++||||||||||||||++|+|+.++| +.+|+
T Consensus 752 ~~~~~~~~l~~~nl~~~~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~ 822 (1394)
T TIGR00956 752 EKESGEDIFHWRNLTYEVKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGD 822 (1394)
T ss_pred cccCCCceEEEEeeEEEecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeE
Confidence 1 112357999999988532 13467999999999999999999999999999999999997644 45699
Q ss_pred EEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 000913 927 ITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1226)
Q Consensus 927 i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 1006 (1226)
|.+||.+... .+++.+|||+|+|.+++.+||+|+|.|++.++.+...+.++++++++++++.++|.+++|+.+|.++ .
T Consensus 823 I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~ 900 (1394)
T TIGR00956 823 RLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-E 900 (1394)
T ss_pred EEECCEECCh-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCC-C
Confidence 9999998753 4677899999999999999999999999988876666677778889999999999999999998764 3
Q ss_pred CCCHHHHHHHHHHHHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 000913 1007 GLSTEQRKRLTIAVELVANPS-IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1226)
Q Consensus 1007 ~LSgGqrqrl~ia~~L~~~p~-il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg 1085 (1226)
+|||||||||+||+||+.+|+ ||||||||||||+.++..|++.|++++++|+|||||+|||+..+++.||++++|++||
T Consensus 901 ~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG 980 (1394)
T TIGR00956 901 GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGG 980 (1394)
T ss_pred CCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCC
Confidence 899999999999999999997 9999999999999999999999999988899999999999977889999999999988
Q ss_pred EEEEeCCCCcchhhHHHHHHhCCCccCCCCCCCccceeeeecchhhhhhhcCCHHHHhhccHHHHHHHHHHhhhCCCCCC
Q 000913 1086 QEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLYRRNKALIEDLSRPPPG 1165 (1226)
Q Consensus 1086 ~~~y~G~~~~~~~~~~~~f~~~~~~~~~~~~~npa~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 1165 (1226)
+++|+|+.+.+++++++||+++ |.++||+++|||||+||+++...+.....+|.+.|+.|+.++...+.++.+..+...
T Consensus 981 ~iv~~G~~~~~~~~~~~yf~~~-G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 1059 (1394)
T TIGR00956 981 QTVYFGDLGENSHTIINYFEKH-GAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSK 1059 (1394)
T ss_pred EEEEECCcccccchHHHHHHhc-CCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhccccc
Confidence 9999999998889999999986 666799999999999999886544333468999999999887766655554332211
Q ss_pred CC---CCCCCCccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 000913 1166 SK---DLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGR 1225 (1226)
Q Consensus 1166 ~~---~~~~~~~~~~~~~~q~~~l~~r~~~~~~R~~~~~~~r~~~~~~~~l~~g~~~~~~g~~ 1225 (1226)
.. +.....+|++||++|+++|++|+++++||||.|+++|+++++++|+++|++||++|++
T Consensus 1060 ~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~ 1122 (1394)
T TIGR00956 1060 AEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTS 1122 (1394)
T ss_pred CccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 11 1112247899999999999999999999999999999999999999999999999875
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-83 Score=791.44 Aligned_cols=583 Identities=30% Similarity=0.498 Sum_probs=492.6
Q ss_pred CCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHH
Q 000913 114 LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTT 193 (1226)
Q Consensus 114 ~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKST 193 (1226)
...++++|+|++++.... .+..+++|+||||.++|||++|||||+||||||
T Consensus 21 ~~~~~~~~~~~~~~~~~~-----------------------------~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtT 71 (613)
T KOG0061|consen 21 LEPVKLSFRNLTLSSKEK-----------------------------SKKTKTILKGVSGTAKPGELLAIMGPSGSGKTT 71 (613)
T ss_pred cccceeEEEEEEEEecCC-----------------------------CCccceeeeCcEEEEecCeEEEEECCCCCCHHH
Confidence 457889999999998542 114577999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhc
Q 000913 194 LLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273 (1226)
Q Consensus 194 LL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 273 (1226)
||++|+|+......++|+|++||++.+....++.+|||.|+|.+++++||+|||.|+++++-+.. .
T Consensus 72 LL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~-------~------- 137 (613)
T KOG0061|consen 72 LLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS-------L------- 137 (613)
T ss_pred HHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC-------C-------
Confidence 99999999987667899999999887766677899999999999999999999999999875432 0
Q ss_pred CCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCC
Q 000913 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTG 353 (1226)
Q Consensus 274 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsg 353 (1226)
..++.+.+++.+++.|||.+|+||+||+...|||||||||||+||..|+.+|+||||||||||
T Consensus 138 -----------------~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 138 -----------------SKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred -----------------CHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 112345678999999999999999999998999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEEEecChhHHHHHHHhcCCCCCCCCChHHHH
Q 000913 354 LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 433 (1226)
Q Consensus 354 LDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl 433 (1226)
||+.++.++++.|+++|+. ++|+|++||||+.+++++||++++|++|+++|+|+++++.+||+++||+||++.||+||+
T Consensus 201 LDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~ 279 (613)
T KOG0061|consen 201 LDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFL 279 (613)
T ss_pred cchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHH
Confidence 9999999999999999986 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCch--hhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhcCCccccchhhccccccccCCcHHHHHHHHHHH
Q 000913 434 QEVTSRK--DQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISR 511 (1226)
Q Consensus 434 ~~v~s~~--~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R 511 (1226)
.++.+.. .+..... .......+.++......+............ .........++|.|+..+++|
T Consensus 280 l~l~s~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~q~~~L~~R 346 (613)
T KOG0061|consen 280 LDLLSVDSGTRELEEA--------VRIAKLINKFSQTDNLKKTLEALEKSLSTS-----KKVEIGTSPSWWTQFKILLKR 346 (613)
T ss_pred HHHHccCCCchhHHhH--------HHHHHHhhhccccchhhhhHHHHhhhcccc-----cccccccCCcHHHHHHHHHHH
Confidence 9988743 1110000 000001111110000000000000000000 000111167899999999999
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCcccccccchhhHHHHHHHHHHHhHHH-HHHHHHhhchhhHHhh
Q 000913 512 ELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFS-EISMTIAKLPVFYKQR 590 (1226)
Q Consensus 512 ~~~~~~R~~~~~~~r~~~~~~~ali~gtlf~~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~~-~~~~~~~~~~vf~kqr 590 (1226)
.+..+.|++.++..|+++.+++++++|++||+.+.... ......|++||.+.+..+..+. .++.+..++++|.||+
T Consensus 347 ~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~---~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~ 423 (613)
T KOG0061|consen 347 SLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAK---GIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRET 423 (613)
T ss_pred HhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchH---HHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999998754333 2235678888888887666555 6889999999999999
Q ss_pred cccccChhhHHHHHHHHHhcHHHHHHHHHHHHhhhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Q 000913 591 DFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTF 670 (1226)
Q Consensus 591 ~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~ 670 (1226)
..++|+.++|++++.+.++|+.++.+++|++++|||+|++++..+|+.+.+++++..+++.+++.++++..++...|.++
T Consensus 424 ~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~ 503 (613)
T KOG0061|consen 424 SSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSL 503 (613)
T ss_pred hcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCccchhHHHHHHHhHcHHHHHHHHHHHHhhcCCccccccC--CCccchhhhhhhccCcccccch
Q 000913 671 GSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQ--DSSETLGVQVLKSRGFFAHEYW 748 (1226)
Q Consensus 671 ~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~--~~~~~~G~~~L~~~~~~~~~~~ 748 (1226)
++++++.+++++||+++.++||.||+|+.|+|+++|++++++.|||.+....|... ..+...|.++++..++... .
T Consensus 504 ~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~ 581 (613)
T KOG0061|consen 504 GPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDS--S 581 (613)
T ss_pred HHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCccc--c
Confidence 99999999999999999999999999999999999999999999999743444332 3456678899998887654 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000913 749 YWLGLGALFGFVLLLNFAYTLALTFLD 775 (1226)
Q Consensus 749 ~w~~~g~l~~~~~~f~~~~~l~l~~~~ 775 (1226)
.|.++.+++++.++|++++++++++..
T Consensus 582 ~~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 582 FWLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 689999999999999999999998864
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-82 Score=789.50 Aligned_cols=609 Identities=21% Similarity=0.324 Sum_probs=472.3
Q ss_pred CCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHH
Q 000913 114 LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTT 193 (1226)
Q Consensus 114 ~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKST 193 (1226)
.++++++|.|+++.+.......+... +...+..- ........+...+++|+|||+.++|||+++|+|||||||||
T Consensus 35 ~~~~~~~~~~~~y~~~~~~~~~~~~~----~~~~~~~~-~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKST 109 (659)
T PLN03211 35 CYPITLKFMDVCYRVKFENMKNKGSN----IKRILGHK-PKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKST 109 (659)
T ss_pred CCceEEEEEeEEEEEccCCCcccccc----cccccccc-cccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHH
Confidence 45799999999999754210111100 00000000 00000111223467999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhc
Q 000913 194 LLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273 (1226)
Q Consensus 194 LL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 273 (1226)
||++|+|+++++ ..+|+|.+||+++... .++.++||+|++.+++.+||+||+.|++.++.+... .
T Consensus 110 LL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~-------~------ 174 (659)
T PLN03211 110 LLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSL-------T------ 174 (659)
T ss_pred HHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCC-------C------
Confidence 999999998874 3589999999987532 235699999999999999999999998765421100 0
Q ss_pred CCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCC
Q 000913 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTG 353 (1226)
Q Consensus 274 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsg 353 (1226)
.++....++.+++.+||++++||.||++..++|||||||||+||++|+.+|+||||||||+|
T Consensus 175 ------------------~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsg 236 (659)
T PLN03211 175 ------------------KQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 236 (659)
T ss_pred ------------------HHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCC
Confidence 01122346788999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEEEecChhHHHHHHHhcCCCCCCCCChHHHH
Q 000913 354 LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 433 (1226)
Q Consensus 354 LDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl 433 (1226)
||+.++.++++.|+++++ .++|+|+++||+..+++++||+|++|++|+++|+|+++++.+||+++||+||++.|||||+
T Consensus 237 LD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ 315 (659)
T PLN03211 237 LDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFL 315 (659)
T ss_pred cCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHH
Confidence 999999999999999876 5789999999988889999999999999999999999999999999999999999999999
Q ss_pred HHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhcC---Cccccc-----hhhc-cccccccCCcHHHH
Q 000913 434 QEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRT---PFDKSK-----SHRA-ALTTETYGVGKREL 504 (1226)
Q Consensus 434 ~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~~~~~~~l~~---~~~~~~-----~~~~-~~~~~~~~~s~~~~ 504 (1226)
.++.+...+.......+.+ ...+.+.+.|++... ....+.... +..... ..+. ......+..++|.|
T Consensus 316 ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q 391 (659)
T PLN03211 316 LDLANGVCQTDGVSEREKP---NVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQ 391 (659)
T ss_pred HHHcCccccCCCccccccc---hHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHH
Confidence 9998764321100000001 112333444432111 111111100 000000 0000 00112245689999
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCcccccccchhhHHHHHHHHHHH-hHHHHHHHHHhhc
Q 000913 505 LKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNF-NGFSEISMTIAKL 583 (1226)
Q Consensus 505 ~~~~~~R~~~~~~R~~~~~~~r~~~~~~~ali~gtlf~~~~~~~~~~~~~~~~~g~lff~l~~~~~-~~~~~~~~~~~~~ 583 (1226)
+..+++|.++. +|+..+...|+++.+++|+++|++|++.+ ..+.+.+.|++||++++.++ ..++.++.+..++
T Consensus 392 ~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er 465 (659)
T PLN03211 392 FSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQER 465 (659)
T ss_pred HHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999888 78888888999999999999999999653 23456678999998877554 5567888899999
Q ss_pred hhhHHhhcccccChhhHHHHHHHHHhcHHHHHHHHHHHHhhhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000913 584 PVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRN 663 (1226)
Q Consensus 584 ~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~l~~~~~~~~~~~l~~~ia~~~~~ 663 (1226)
++|+|||..++|++++|++|+++.++|+.++.+++|++|+|||+|+.+++++||.|+++++++.+++++++.++++++++
T Consensus 466 ~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~ 545 (659)
T PLN03211 466 AIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMD 545 (659)
T ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHhHcHHHHHHHHHHHHhhcCCcc-----ccccCCCccchhhhhhh
Q 000913 664 MVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW-----KKFTQDSSETLGVQVLK 738 (1226)
Q Consensus 664 ~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~-----~~~~~~~~~~~G~~~L~ 738 (1226)
+.+|+.+++++++++++|+||+++ +||+||+|++|+||++|++++++.|||.+.+. .|..+......+..++.
T Consensus 546 ~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~ 623 (659)
T PLN03211 546 AKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVE 623 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccch
Confidence 999999999999999999999997 79999999999999999999999999976542 33221110111122232
Q ss_pred ccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000913 739 SRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLD 775 (1226)
Q Consensus 739 ~~~~~~~~~~~w~~~g~l~~~~~~f~~~~~l~l~~~~ 775 (1226)
...+. ....|.++++|++++++|+++.+++|++.+
T Consensus 624 ~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 624 EDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred hhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22222 235788999999999999999999998654
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-82 Score=793.29 Aligned_cols=569 Identities=25% Similarity=0.415 Sum_probs=481.9
Q ss_pred cccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCC
Q 000913 162 KRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 241 (1226)
Q Consensus 162 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (1226)
+.++++|+|||+.++|||+++|+|||||||||||++|+|+.+++...+|+|.+||.+++....++.++||+|+|.+++++
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 34577999999999999999999999999999999999998875456899999999876544567899999999999999
Q ss_pred CHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccc-
Q 000913 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM- 320 (1226)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~- 320 (1226)
||+|||.|+++++.+.... .++....++.+++.+||++++||.||+.+
T Consensus 115 TV~e~l~f~~~~~~~~~~~-------------------------------~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 163 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVT-------------------------------KKEKRERVDEVLQALGLRKCANTRIGVPGR 163 (617)
T ss_pred cHHHHHHHHHhcCCCCCCC-------------------------------HHHHHHHHHHHHHHcCchhcCcCccCCCCC
Confidence 9999999998776432100 01122357889999999999999999864
Q ss_pred cCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcC
Q 000913 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1226)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1226)
.++|||||||||+||++|+.+|+++||||||+|||+.++.++++.|+++++ .++|+|+++|||+.+++++||++++|++
T Consensus 164 ~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~ 242 (617)
T TIGR00955 164 VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAE 242 (617)
T ss_pred CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeC
Confidence 789999999999999999999999999999999999999999999999876 5889999999999999999999999999
Q ss_pred CeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhcC
Q 000913 401 GQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRT 480 (1226)
Q Consensus 401 G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~~~~~~~l~~ 480 (1226)
|+++|+|+++++.+||+++||+||++.||+||+.++.+....... . .....+++.+.|+.+...++..+....
T Consensus 243 G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~s~~~~~~~~~~~~ 315 (617)
T TIGR00955 243 GRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSEN-----E--SRERIEKICDSFAVSDIGRDMLVNTNL 315 (617)
T ss_pred CeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccccc-----c--hHHHHHHHHHHHhcchhhHHHHHHhhh
Confidence 999999999999999999999999999999999998875322110 0 011234566666666554444333221
Q ss_pred Cccccc---hhhccccccccCCcHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCcccccccch
Q 000913 481 PFDKSK---SHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIF 557 (1226)
Q Consensus 481 ~~~~~~---~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~ali~gtlf~~~~~~~~~~~~~~~~ 557 (1226)
...+.. ..........+..+++.|+..+++|.++..+||+..+..++++.+++++++|++|++.+.+. .+....
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~---~~~~~~ 392 (617)
T TIGR00955 316 WSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQ---KGVQNI 392 (617)
T ss_pred hhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCH---HHHHHH
Confidence 111000 00001122356788999999999999999999999999999999999999999999765432 344556
Q ss_pred hhHHHHHHHHHHHhHH-HHHHHHHhhchhhHHhhcccccChhhHHHHHHHHHhcHHHHHHHHHHHHhhhcccCcCchhHH
Q 000913 558 AGATFFAITMVNFNGF-SEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRF 636 (1226)
Q Consensus 558 ~g~lff~l~~~~~~~~-~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~f 636 (1226)
.|++|+.+++.+|.++ ..++.+..++++|+|||..++|++++|++++.+.++|+.++.+++|++++|||+|+++++++|
T Consensus 393 ~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f 472 (617)
T TIGR00955 393 NGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHF 472 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHH
Confidence 7889998888777754 556777789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHhHcHHHHHHHHHHHHhh
Q 000913 637 FKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEF 716 (1226)
Q Consensus 637 ~~~~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef 716 (1226)
|.++++++++..++.+++.++++++++..+|+.+++++++++++|+||+++.++||+||+|++|+||++|++++++.|||
T Consensus 473 ~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef 552 (617)
T TIGR00955 473 LTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQW 552 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc-ccccCC---CccchhhhhhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000913 717 LGHSW-KKFTQD---SSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFL 774 (1226)
Q Consensus 717 ~~~~~-~~~~~~---~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~~~~~~f~~~~~l~l~~~ 774 (1226)
.+..+ .|...+ .+...|.++|+.+|+..+ +.|.++++++++.++|.++++++|++.
T Consensus 553 ~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 553 SDVDNIECTSANTTGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred CCCccccccCcCcCCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98776 343211 123458999999988654 458999999999999999999999874
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-81 Score=824.71 Aligned_cols=596 Identities=22% Similarity=0.377 Sum_probs=499.3
Q ss_pred cCCCCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCC
Q 000913 110 VGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSS 189 (1226)
Q Consensus 110 ~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~Gs 189 (1226)
+.++...+.+.|+||+|.++.+.+.+. ...++.++.+|+|||+.++||++++|+|||||
T Consensus 859 ~~~~~~~~~~~~~~v~y~v~~~~~~~~---------------------~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGa 917 (1470)
T PLN03140 859 MVLPFTPLAMSFDDVNYFVDMPAEMKE---------------------QGVTEDRLQLLREVTGAFRPGVLTALMGVSGA 917 (1470)
T ss_pred cccCCCcceEEEEEEEEEEccCccccc---------------------cccCcCCceEeeCcEEEEECCeEEEEECCCCC
Confidence 334566678999999999865321100 01122345799999999999999999999999
Q ss_pred cHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHH
Q 000913 190 GKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARR 269 (1226)
Q Consensus 190 GKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ 269 (1226)
||||||++|+|+.++. ..+|+|.+||++.++...++.+|||+|+|.|++.+||+|||.|++.++.+...
T Consensus 918 GKTTLL~~LaG~~~~g-~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~---------- 986 (1470)
T PLN03140 918 GKTTLMDVLAGRKTGG-YIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEV---------- 986 (1470)
T ss_pred CHHHHHHHHcCCCCCC-cccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCC----------
Confidence 9999999999997642 35899999998875444456799999999999999999999998765421110
Q ss_pred HHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHhhHHHHHHHHhcCCccceeec
Q 000913 270 EKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDE 349 (1226)
Q Consensus 270 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDE 349 (1226)
..++....++++++.+||++++|+.||+..+++|||||||||+||++|+.+|++|||||
T Consensus 987 ---------------------~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDE 1045 (1470)
T PLN03140 987 ---------------------SKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDE 1045 (1470)
T ss_pred ---------------------CHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 00111235788999999999999999988888999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcC-CeEEEecCh----hHHHHHHHhc-CC-C
Q 000913 350 ISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD-GQIVYQGPR----ELVLEFFASM-GF-R 422 (1226)
Q Consensus 350 ptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~-G~iv~~G~~----~~~~~~F~~~-Gf-~ 422 (1226)
||+|||+.++..+++.|+++++ .++|+|+++|||..++++.||++++|++ |+++|+|+. +++.+||+++ |+ +
T Consensus 1046 PTsgLD~~~a~~v~~~L~~l~~-~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~ 1124 (1470)
T PLN03140 1046 PTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPK 1124 (1470)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCC
Confidence 9999999999999999999876 5789999999998889999999999996 899999996 6899999997 66 4
Q ss_pred CCCCCChHHHHHHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhc---CCccccchhhccccccccCC
Q 000913 423 CPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELR---TPFDKSKSHRAALTTETYGV 499 (1226)
Q Consensus 423 cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~ 499 (1226)
||+..|||||+.++.+..... ....++++.|+.++.++...+++. .+.... +.......|..
T Consensus 1125 ~p~~~NPAd~~l~v~~~~~~~------------~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 1189 (1470)
T PLN03140 1125 IKEKYNPATWMLEVSSLAAEV------------KLGIDFAEHYKSSSLYQRNKALVKELSTPPPGA---SDLYFATQYSQ 1189 (1470)
T ss_pred CCCCCCchhhhhhhhcccccc------------cccchHHHHHhccHHHHHHHHHHHHhccCCCCc---cccccCccccC
Confidence 999999999999998643211 112367788888877665544332 221111 11112356889
Q ss_pred cHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCcccccccchhhHHHHHHHHHHHhHH-HHHHH
Q 000913 500 GKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGF-SEISM 578 (1226)
Q Consensus 500 s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~ali~gtlf~~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~-~~~~~ 578 (1226)
++|.|+++|++|+++..+||+.++..|+++.+++|+++|++||+.+.+..+..+.+...|++|+++++..++.. +.++.
T Consensus 1190 s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~ 1269 (1470)
T PLN03140 1190 STWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPM 1269 (1470)
T ss_pred CHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998776554455666678999998888777655 44577
Q ss_pred HHhhchhhHHhhcccccChhhHHHHHHHHHhcHHHHHHHHHHHHhhhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000913 579 TIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIA 658 (1226)
Q Consensus 579 ~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~l~~~~~~~~~~~l~~~ia 658 (1226)
+..+|++|+|||..++|++++|++++.+.++|+.++.+++|.+|+|||+||.++++.||.++++++++.+++.+++.+++
T Consensus 1270 ~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~ 1349 (1470)
T PLN03140 1270 VAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTV 1349 (1470)
T ss_pred HHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccHHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHhHcHHHHHHHHHHHHhhcCCccccccCCC-ccchhhhh-
Q 000913 659 VTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDS-SETLGVQV- 736 (1226)
Q Consensus 659 ~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~-~~~~G~~~- 736 (1226)
+++|+..+|..++++++.++++|+||++++++||+||+|+||+||+.|++++++.|||.+....+.+++. ....+.++
T Consensus 1350 a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~ 1429 (1470)
T PLN03140 1350 SLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYI 1429 (1470)
T ss_pred HHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988776655432 11234444
Q ss_pred hhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000913 737 LKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDP 776 (1226)
Q Consensus 737 L~~~~~~~~~~~~w~~~g~l~~~~~~f~~~~~l~l~~~~~ 776 (1226)
+..+|+. ..|.|.+++++++|+++|.++++++++++++
T Consensus 1430 ~~~~g~~--~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~ 1467 (1470)
T PLN03140 1430 QDHYGYD--PDFMGPVAAVLVGFTVFFAFIFAFCIRTLNF 1467 (1470)
T ss_pred HHhcCcC--cccccchhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 6677775 4578899999999999999999999999875
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-78 Score=752.05 Aligned_cols=841 Identities=22% Similarity=0.271 Sum_probs=462.9
Q ss_pred hHhhHHHHHHhhhccccChHHHHHHHHHHh-hhcCCCCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhh
Q 000913 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRI-DRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLR 156 (1226)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 156 (1226)
+..++....+++++++..+. +...- ..--..-...+|+|+||+++|..
T Consensus 314 f~~a~~aa~~I~~~i~~~~~-----i~~~~~~~~~~~~~~g~ief~nV~FsYPs-------------------------- 362 (1228)
T KOG0055|consen 314 FAKARAAAYRIFETIDRKPS-----IDPYSKGGRVLSSIKGEIEFRNVCFSYPS-------------------------- 362 (1228)
T ss_pred HhccccchHHHHHHhcCCCC-----CCcccccCCcccccccceEEEEEEecCCC--------------------------
Confidence 56788888999999888776 32211 11122335789999999999832
Q ss_pred hcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecC
Q 000913 157 IIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQ 233 (1226)
Q Consensus 157 ~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q 233 (1226)
+ ++..||+|+|+.|++|+.++|+|||||||||++++|.++++|+ +|+|+++|.++.++.. +.++|.|+|
T Consensus 363 ----R-pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~Q 434 (1228)
T KOG0055|consen 363 ----R-PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQ 434 (1228)
T ss_pred ----C-CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeee
Confidence 3 3566999999999999999999999999999999999999999 9999999999988765 478999999
Q ss_pred CCCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccc
Q 000913 234 HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (1226)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1226)
+|.+| ..||+|||.|+. ++...+...++++...+ .--+..|++.+|
T Consensus 435 ePvlF-~~tI~eNI~~G~----~dat~~~i~~a~k~ana-----------------------------~~fi~~lp~g~~ 480 (1228)
T KOG0055|consen 435 EPVLF-ATTIRENIRYGK----PDATREEIEEAAKAANA-----------------------------HDFILKLPDGYD 480 (1228)
T ss_pred chhhh-cccHHHHHhcCC----CcccHHHHHHHHHHccH-----------------------------HHHHHhhHHhhc
Confidence 99655 579999999975 22333444444433221 112456889999
Q ss_pred ccccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcC
Q 000913 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (1226)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 393 (1226)
|.||++++. |||||||||+|||||+.+|+|||||||||+||+.+...+.+.|.+.. .++|+|+.. | +..+.+.+|
T Consensus 481 T~vge~g~q-LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTivVa-H-RLStIrnaD 555 (1228)
T KOG0055|consen 481 TLVGERGVQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIVVA-H-RLSTIRNAD 555 (1228)
T ss_pred ccccCCCCC-CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEEEe-e-ehhhhhccC
Confidence 999998885 99999999999999999999999999999999999999999999864 455666643 3 455666799
Q ss_pred cEEEEcCCeEEEecChhHHHHHHHhcCCCCCCCCChHHHH--HHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhch--
Q 000913 394 DIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL--QEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFH-- 469 (1226)
Q Consensus 394 ~iilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl--~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~-- 469 (1226)
+|++|++|+||+.|+++|++.. ..-.++.+ |+.....+. ..+. .. ...+.....+.+.
T Consensus 556 ~I~v~~~G~IvE~G~h~ELi~~----------~G~Y~~lv~~Q~~~~~~~~-~~~~---~~----~~~~~~~s~~~s~~~ 617 (1228)
T KOG0055|consen 556 KIAVMEEGKIVEQGTHDELIAL----------GGIYSSLVRLQELEKAAED-EEEE---ES----LKEERSRSLKSSSSS 617 (1228)
T ss_pred EEEEEECCEEEEecCHHHHHhc----------cchHHHHHHHHhhhhhhhc-cccc---cc----hhhhhhhcccccccc
Confidence 9999999999999999999862 11112222 122211110 0000 00 0000000000000
Q ss_pred ----hhhhhHHhh-cCCccccchhhccccccccCCcHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-------HHHH
Q 000913 470 ----VGQKISDEL-RTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFV-------AVVY 537 (1226)
Q Consensus 470 ----~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~-------ali~ 537 (1226)
......... ..+.++....+ ..... .+.-+.|-+.+.+.++.+.+...+..++. ++++
T Consensus 618 ~~~~~~~~~~~~~~~~~~~e~~~~~--~~~~~--------~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~ 687 (1228)
T KOG0055|consen 618 PSLSRGSNRSNLLSVKPEGEDPEEP--VSEED--------EKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVF 687 (1228)
T ss_pred ccccCCccccccccccccccccccc--ccccc--------ccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 000000000 00000000000 00111 22233444455555555544444333332 3333
Q ss_pred HHHHhccc-CCCcccccccchhhHHHHHHHHHHH--hHHHHHHHHHhhchhhHHhhcccccChhhHHHHHHHHHhcHHHH
Q 000913 538 MTLFLRTK-MHKDTVTDGGIFAGATFFAITMVNF--NGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFL 614 (1226)
Q Consensus 538 gtlf~~~~-~~~~~~~~~~~~~g~lff~l~~~~~--~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~ 614 (1226)
+.++--.. .+.+........+.++|..+....+ +.+......+..- .+..++-
T Consensus 688 s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge--------------------~Lt~R~R---- 743 (1228)
T KOG0055|consen 688 SQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGE--------------------KLTKRLR---- 743 (1228)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHH----
Confidence 32221101 1111111111123333333222111 1001111111000 0011111
Q ss_pred HHHHHHHHhhhcccCcCch---hHHHHHHHHHH-----HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhccc
Q 000913 615 EVAVWVFLSYYVVGYDSNA---GRFFKQYALLL-----GVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFIL 686 (1226)
Q Consensus 615 ~~~i~~~i~Y~~~gl~~~~---~~f~~~~l~~~-----~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i 686 (1226)
...|..+++.=+++-.+. ++....+...- ++..-...+...++++.-.+.+|...+|-+.++++.+..+++
T Consensus 744 -~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~ 822 (1228)
T KOG0055|consen 744 -SMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLI 822 (1228)
T ss_pred -HHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222222222221111 22222222111 111112223333444444455555555544333332221111
Q ss_pred CccchhHHHHHHHhHcH---HHHHHHHHHHHhhcCCccccccCCCccchhhhhhhccCc-------ccccchhHHHHHHH
Q 000913 687 SREDIKKWWKWAYWCSP---LTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGF-------FAHEYWYWLGLGAL 756 (1226)
Q Consensus 687 ~~~~ip~~~~W~~~isp---~~y~~~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~~~-------~~~~~~~w~~~g~l 756 (1226)
-..-+.. +++.-.+. -.|.-.+-+++|-..+-... ...+....++..+.- ..-....|.+++.-
T Consensus 823 ~~~~~~~--~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV----~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~ 896 (1228)
T KOG0055|consen 823 LSGYLQK--KFLKGFSKDDKKAYEEASKIAIEAVSNIRTV----AALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFG 896 (1228)
T ss_pred HHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHHHhHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 00000000 00111111111111000000 000001111111100 00011234444333
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCCcccccccCCCCCCCCCCCCCCcccccccccchhhhhh
Q 000913 757 FGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAE 836 (1226)
Q Consensus 757 ~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (1226)
+...++| +.+.++++|-..+-............. ..+..+++..........|.-..+...........+
T Consensus 897 ~sqs~~~-~~~A~~f~~G~~Li~~g~~~~~~~~~v---------f~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~d 966 (1228)
T KOG0055|consen 897 FSQSLLF-FVYALSFWYGARLISNGEMTFEDVFRV---------FMALSFTAMALGQASSYAPDISKAKIAAGSIFEILD 966 (1228)
T ss_pred HHHHHHH-HHHHHHHHHhHHHHhcCCcCHHHHHHH---------HHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhc
Confidence 3333222 223334443222111111100000000 000000000000000011111000000000000000
Q ss_pred hhc--CCCcCCCCccCCCCceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhh
Q 000913 837 AEA--SRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 914 (1226)
Q Consensus 837 ~~~--~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L 914 (1226)
..+ +.....+...|.....++|+||.+.||..+ +.++|+|+|+++++|+.+||||||||||||.+.+|
T Consensus 967 r~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP----------~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LL 1036 (1228)
T KOG0055|consen 967 RKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRP----------DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLL 1036 (1228)
T ss_pred CCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCC----------CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHH
Confidence 111 111112222344456899999999998654 46799999999999999999999999999999999
Q ss_pred cCCCCCceEEEEEEEcCccCCh---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcC
Q 000913 915 AGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 991 (1226)
Q Consensus 915 ~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~ 991 (1226)
-+... +..|.|.|||.+++. ..+|+++|.|.|+|.++. -|++||+.|+ . . +++.++ +.++++..+
T Consensus 1037 eRfYd--p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG--~--~-~vs~~e----Ii~Aak~AN 1104 (1228)
T KOG0055|consen 1037 ERFYD--PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYG--S--E-EVSEEE----IIEAAKLAN 1104 (1228)
T ss_pred HHhcC--CCCCeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhcc--C--C-CCCHHH----HHHHHHHhh
Confidence 88765 678999999998754 457889999999999986 6999999997 1 1 133332 444444443
Q ss_pred -------CCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q 000913 992 -------LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1064 (1226)
Q Consensus 992 -------l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~ 1064 (1226)
|.+=.|+.+|..| ..||||||||++|||||++||+||+|||.||.||+++.+.|+++|.+.. .|||.|+++
T Consensus 1105 aH~FI~sLP~GyDT~vGerG-~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIA 1182 (1228)
T KOG0055|consen 1105 AHNFISSLPQGYDTRVGERG-VQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIA 1182 (1228)
T ss_pred hHHHHhcCcCcccCccCccc-CcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEe
Confidence 3445678888765 4799999999999999999999999999999999999999999999874 689999999
Q ss_pred cCCcHHHHHhcCeEEEEecCcEEEEeCC
Q 000913 1065 HQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1226)
Q Consensus 1065 H~p~~~i~~~~D~v~ll~~Gg~~~y~G~ 1092 (1226)
|++| ..+.+|.|.++++ |++++.|.
T Consensus 1183 HRLS--TIqnaD~I~Vi~~-G~VvE~Gt 1207 (1228)
T KOG0055|consen 1183 HRLS--TIQNADVIAVLKN-GKVVEQGT 1207 (1228)
T ss_pred cchh--hhhcCCEEEEEEC-CEEEeccc
Confidence 9987 5788999999986 79999997
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-77 Score=742.83 Aligned_cols=560 Identities=23% Similarity=0.364 Sum_probs=473.5
Q ss_pred ccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCCC
Q 000913 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242 (1226)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1226)
.++++|+||+|.++||.+|||||+|||||||||++|||+... +.++|+|++||.+.++...+|.+|||.|+|.|.+++|
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~-G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~T 880 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG-GYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELT 880 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCccc-ceEEeEEEECCeeCchhhhccccceeecccccCcccc
Confidence 567799999999999999999999999999999999999865 4689999999999987777899999999999999999
Q ss_pred HHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 000913 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1226)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1226)
|||.|.|+|.++.+... ..++....+|++++.++|++++|.+||+.+ +
T Consensus 881 VrESL~fSA~LRlp~~v-------------------------------~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~ 928 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKEV-------------------------------SDEEKYEYVEEVIELLELKEYADALVGLPG-S 928 (1391)
T ss_pred hHHHHHHHHHHcCCCcC-------------------------------CHHHHHHHHHHHHHHhCchhhhhhhccCCC-C
Confidence 99999999988743211 122334679999999999999999999998 9
Q ss_pred CCChhHhhHHHHHHHHhcCC-ccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEc-C
Q 000913 323 GISGGQKKRVTTGEMMVGPA-LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS-D 400 (1226)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p-~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~-~ 400 (1226)
|||.+||||++||..|+.+| .||||||||||||+.++..|++.+|+++. .|.|++|+||||+..+++.||++++|. +
T Consensus 929 GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrG 1007 (1391)
T KOG0065|consen 929 GLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRG 1007 (1391)
T ss_pred CCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcC
Confidence 99999999999999999999 99999999999999999999999999997 789999999999999999999999997 6
Q ss_pred CeEEEecChh----HHHHHHHhcC-CCCCCCCChHHHHHHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhH
Q 000913 401 GQIVYQGPRE----LVLEFFASMG-FRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKIS 475 (1226)
Q Consensus 401 G~iv~~G~~~----~~~~~F~~~G-f~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~~~~~ 475 (1226)
|++||.||.. .+++||++.| .+||+..|||||+.|+.+...+.. ...++++.|++|..++++.
T Consensus 1008 GqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~------------~~~D~a~~w~~S~e~k~~~ 1075 (1391)
T KOG0065|consen 1008 GQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEAS------------LSVDFAEIWKNSEEYKRNK 1075 (1391)
T ss_pred CeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccc------------cCccHHHHHhccHHHHHHH
Confidence 8999999874 4677999987 999999999999999987643321 1237889999999888776
Q ss_pred Hhhc---CCccccchhhccccccccCCcHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCcccc
Q 000913 476 DELR---TPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVT 552 (1226)
Q Consensus 476 ~~l~---~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~ali~gtlf~~~~~~~~~~~ 552 (1226)
+++. .+... ..........|+.++|.|++.|++|++...||++.+...|++..++.++++|+.||+.+ .+.+
T Consensus 1076 e~v~~l~~~~~~--~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g---~~~q 1150 (1391)
T KOG0065|consen 1076 ELVKELSQPPPG--FSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVG---HNVQ 1150 (1391)
T ss_pred HHHHHHhcCCcc--CCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecC---CcHH
Confidence 6543 33332 12222345568899999999999999999999999999999999999999999999877 3456
Q ss_pred cccchhhHHHHHHHHHHHhHHH-HHHHHHhhchhhHHhhcccccChhhHHHHHHHHHhcHHHHHHHHHHHHhhhcccCcC
Q 000913 553 DGGIFAGATFFAITMVNFNGFS-EISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDS 631 (1226)
Q Consensus 553 ~~~~~~g~lff~l~~~~~~~~~-~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~ 631 (1226)
+.+..++++|.++++...+... ..+..-.++-++||||..++|+..+|+++..++++|+.++.+.+|.++.||++||..
T Consensus 1151 ~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~ 1230 (1391)
T KOG0065|consen 1151 GLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYW 1230 (1391)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchh
Confidence 6777888888888776654444 444555688899999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHhHcHHHHHHHHH
Q 000913 632 NAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAI 711 (1226)
Q Consensus 632 ~~~~f~~~~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al 711 (1226)
++.+|+.+++..+...+....++.++.+++||..+|..+.++++.++.+|+||+.++..||.||+|+||+||+.|..+++
T Consensus 1231 ~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gl 1310 (1391)
T KOG0065|consen 1231 TASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGL 1310 (1391)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCccccccCC-------CccchhhhhhhccC----cccccchhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000913 712 VANEFLGHSWKKFTQD-------SSETLGVQVLKSRG----FFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLD 775 (1226)
Q Consensus 712 ~~nef~~~~~~~~~~~-------~~~~~G~~~L~~~~----~~~~~~~~w~~~g~l~~~~~~f~~~~~l~l~~~~ 775 (1226)
+...+++..-.|...+ ...+.|...-..++ +..+..- ....+.++|.+.+.+++.+..+|.+
T Consensus 1311 i~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a--~~~c~~c~y~v~~~~l~~f~~~y~~ 1383 (1391)
T KOG0065|consen 1311 ISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLA--TTACVYCAYTVADAFLAAFNIKYLN 1383 (1391)
T ss_pred HHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcc--eeEEEEeeeehHHHHHHHHHHHHHH
Confidence 9999998766654322 33455655554445 3222111 0111233344555555555555543
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-74 Score=771.31 Aligned_cols=577 Identities=24% Similarity=0.356 Sum_probs=473.3
Q ss_pred cceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHH
Q 000913 116 KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLL 195 (1226)
Q Consensus 116 ~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL 195 (1226)
...++|+||++.+.. ++.++.+|+|||+.++||++++|+|||||||||||
T Consensus 757 ~~~l~~~nl~~~~~~------------------------------~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL 806 (1394)
T TIGR00956 757 EDIFHWRNLTYEVKI------------------------------KKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLL 806 (1394)
T ss_pred CceEEEEeeEEEecC------------------------------CCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHH
Confidence 345899999988732 12235699999999999999999999999999999
Q ss_pred HHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCC
Q 000913 196 LALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI 275 (1226)
Q Consensus 196 ~~L~G~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (1226)
++|+|+.++....+|+|++||+++.. ..++.++||+|+|.+++.+||+|||.|+++++.+...
T Consensus 807 ~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~---------------- 869 (1394)
T TIGR00956 807 NVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSV---------------- 869 (1394)
T ss_pred HHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCC----------------
Confidence 99999987321227999999998753 3467899999999999999999999999876532110
Q ss_pred CCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHhhHHHHHHHHhcCCc-cceeecCCCCC
Q 000913 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL-ALFMDEISTGL 354 (1226)
Q Consensus 276 ~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~-vllLDEptsgL 354 (1226)
..++....++++++.+||++++|+.||+.+. +|||||||||+||++|+.+|+ |||||||||||
T Consensus 870 ---------------~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~-~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgL 933 (1394)
T TIGR00956 870 ---------------SKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGL 933 (1394)
T ss_pred ---------------CHHHHHHHHHHHHHHcCChhhCCCeeCCCCC-CCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCC
Confidence 0011223578899999999999999997544 799999999999999999997 99999999999
Q ss_pred CHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCC-eEEEecCh----hHHHHHHHhcCC-CCCCCCC
Q 000913 355 DSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG-QIVYQGPR----ELVLEFFASMGF-RCPKRKG 428 (1226)
Q Consensus 355 Ds~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G-~iv~~G~~----~~~~~~F~~~Gf-~cp~~~~ 428 (1226)
|+.++..|++.|+++++ .+.|+|+++|||...+++.||+|++|++| +++|+|+. +++.+||+++|+ +||++.|
T Consensus 934 D~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~N 1012 (1394)
T TIGR00956 934 DSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDAN 1012 (1394)
T ss_pred CHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCC
Confidence 99999999999999875 57899999999988888999999999987 99999997 578999999996 9999999
Q ss_pred hHHHHHHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhc---CCccccchhhccccccccCCcHHHHH
Q 000913 429 VADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELR---TPFDKSKSHRAALTTETYGVGKRELL 505 (1226)
Q Consensus 429 ~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~s~~~~~ 505 (1226)
||||+.++.+...... ...++.+.|+.+...+...+++. .+..............+|..+++.|+
T Consensus 1013 pAd~~ldvi~~~~~~~------------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~ 1080 (1394)
T TIGR00956 1013 PAEWMLEVIGAAPGAH------------ANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQF 1080 (1394)
T ss_pred HHHHHHHHhhcccccc------------hhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCHHHHH
Confidence 9999999876432110 01235556666555444333221 11110000000112246889999999
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCcccccccchhhHHHHHHHHHHHhHHHHHHHHHhhchh
Q 000913 506 KANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPV 585 (1226)
Q Consensus 506 ~~~~~R~~~~~~R~~~~~~~r~~~~~~~ali~gtlf~~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~~~~~~~~~~~~v 585 (1226)
+.+++|.++..+|++.+...|+++.+++|+++|++|++.+.+ ..+.+..+|++|+.+++..+.....++.++.++++
T Consensus 1081 ~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~---~~~i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~ 1157 (1394)
T TIGR00956 1081 KLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTS---LQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDL 1157 (1394)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 999999999999999999999999999999999999987643 34566778888888776666555667777777777
Q ss_pred h-HHhhcccccChhhHHHHHHHHHhcHHHHHHHHHHHHhhhcccCcCchhH-------HHHHHHHHHHHHHHHHHHHHHH
Q 000913 586 F-YKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGR-------FFKQYALLLGVNQMASALFRFI 657 (1226)
Q Consensus 586 f-~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~-------f~~~~l~~~~~~~~~~~l~~~i 657 (1226)
| +|||..++|++++|++++.+.++|+.++.+++|.+++|||+|+.+++.. |+.+++++++...++.+++.++
T Consensus 1158 ~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~ 1237 (1394)
T TIGR00956 1158 YEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMV 1237 (1394)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 9999999999999999999999999999999999999999999988765 9999999999999999999999
Q ss_pred HHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHhHcHHHHHHHHHHHHhhcCCccccccC-----------
Q 000913 658 AVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQ----------- 726 (1226)
Q Consensus 658 a~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~----------- 726 (1226)
++++++..+|..++++++.++++|+||+++.++||.||+|++|+||++|++++++.|||.+....|...
T Consensus 1238 ~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~ 1317 (1394)
T TIGR00956 1238 ISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQ 1317 (1394)
T ss_pred HHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999887655321
Q ss_pred --------------------CC---c----cchhhhhhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000913 727 --------------------DS---S----ETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFL 774 (1226)
Q Consensus 727 --------------------~~---~----~~~G~~~L~~~~~~~~~~~~w~~~g~l~~~~~~f~~~~~l~l~~~ 774 (1226)
+. + ...|.++|+.+++..++ .|.+++++++|++++ ++.++++.|.
T Consensus 1318 tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~--~w~~~~i~~~~~~~~-~~~~~~l~~~ 1389 (1394)
T TIGR00956 1318 TCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSG--RWRNFGIFIAFIFFN-IIATVFFYWL 1389 (1394)
T ss_pred CHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccc--cccchhhhhHHHHHH-HHHHHhhheE
Confidence 00 1 23678888887775544 588999999998887 6666667664
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-72 Score=742.84 Aligned_cols=216 Identities=27% Similarity=0.409 Sum_probs=189.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++. +++.+|+|||+.|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 1937 ~L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEEC
Confidence 5889999887741 12579999999999999999999999999999999999876 5689999999886
Q ss_pred Ch--hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 000913 935 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1012 (1226)
Q Consensus 935 ~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGq 1012 (1226)
.. ...++.+|||+|++.+++.+||+|++.+.+.++. .+.++.++.++++++.++|.+++++.+ +.|||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLA-----GTYSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHH
Confidence 42 2345679999999999999999999998877653 233445667889999999999888875 4699999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCC
Q 000913 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1226)
Q Consensus 1013 rqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~ 1092 (1226)
||||+||+||+.+|+||||||||+|||+.+++.+++.|+++.++|+|||+|||+++ ++..+|||+++|.+ |+++..|+
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs 2153 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999878999999999987 68889999999986 79999998
Q ss_pred C
Q 000913 1093 L 1093 (1226)
Q Consensus 1093 ~ 1093 (1226)
.
T Consensus 2154 ~ 2154 (2272)
T TIGR01257 2154 I 2154 (2272)
T ss_pred H
Confidence 5
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-70 Score=698.33 Aligned_cols=808 Identities=20% Similarity=0.270 Sum_probs=447.3
Q ss_pred hHhhHHHHHHhhhccccChHHHHHHHHHHhhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhh
Q 000913 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1226)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1226)
.-++..+++|+.+.+..+.. -.+...+...+.+...+.++|.+++=+.
T Consensus 483 ~vqa~VS~~Ri~~fl~~~e~-----~~~~~~~~~~~~~~~~i~i~~~sfsW~~--------------------------- 530 (1381)
T KOG0054|consen 483 LVQAKVSLKRLKEFLLSEEL-----DPDSVERSPDEAGENAIEIKNGSFSWDS--------------------------- 530 (1381)
T ss_pred HHHHHHHHHHHHHHhcCccc-----CccccccCCCCCCCceEEEeeeeEecCC---------------------------
Confidence 34678888888887766543 1111122344455667888888877432
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCC
Q 000913 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNH 237 (1226)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~ 237 (1226)
....+.|+|||+.|++|+++||+||.|||||+||.+|.|.++.. +|+|.++|. ++||+|++ |
T Consensus 531 ----~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~gs----------iaYv~Q~p-W 592 (1381)
T KOG0054|consen 531 ----ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNGS----------VAYVPQQP-W 592 (1381)
T ss_pred ----CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcCe----------EEEecccc-H
Confidence 12223899999999999999999999999999999999999876 999999984 99999976 6
Q ss_pred CCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 000913 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1226)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1226)
+.+.||||||.|+..+. ..+|+...++|..+++.++.|++| .|.||
T Consensus 593 I~ngTvreNILFG~~~d--~~rY~~Vi~aC~L~~Dle~Lp~GD--------------------------------~TeIG 638 (1381)
T KOG0054|consen 593 IQNGTVRENILFGSPYD--EERYDKVIKACALKKDLEILPFGD--------------------------------LTEIG 638 (1381)
T ss_pred hhCCcHHHhhhcCcccc--HHHHHHHHHHccCHhHHhhcCCCC--------------------------------cceec
Confidence 66789999999998764 578999999999998887777776 59999
Q ss_pred ccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHH-HHHHHHHccCCeEEEEEecChhhHHhhcCcEE
Q 000913 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN-CLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1226)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~-~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1226)
++++ +||||||||+++|||++++++|++||+|.|++|+++..+|++ |++.+. .++|+|++ +| ..+....+|.|+
T Consensus 639 ErGi-nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L--~~KT~ILV-TH-ql~~L~~ad~Ii 713 (1381)
T KOG0054|consen 639 ERGI-NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL--RGKTVILV-TH-QLQFLPHADQII 713 (1381)
T ss_pred CCcc-CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh--cCCEEEEE-eC-chhhhhhCCEEE
Confidence 9998 599999999999999999999999999999999999999995 775432 45666664 44 578889999999
Q ss_pred EEcCCeEEEecChhHHHH---HHHhcCCCCCCCCChHHHHHHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhh
Q 000913 397 LLSDGQIVYQGPRELVLE---FFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQK 473 (1226)
Q Consensus 397 lL~~G~iv~~G~~~~~~~---~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~~~ 473 (1226)
+|++|+|+..|+++|+.+ .|+++ .. +.....+.. .....+.......+. +. +.......
T Consensus 714 vl~~G~I~~~Gty~el~~~~~~~~~l-~~------------~~~~~~~~~---~~~~~~~~~~~~~~~-~~-~~~~~~~~ 775 (1381)
T KOG0054|consen 714 VLKDGKIVESGTYEELLKSGGDFAEL-AH------------EEESEQEEE---ASEKDLESGESSRES-ES-RSLESLSS 775 (1381)
T ss_pred EecCCeEecccCHHHHHhcchhHHHH-hh------------ccchhhccc---cccccccccccccch-hh-hhhhhhcc
Confidence 999999999999999973 33332 00 000000000 000000000000000 00 00000000
Q ss_pred hHHhhcCCccccchhhc-cccccccCCcHHHHHHHHHHHHHHHHhcchHHHH-HHHHHHHH-HHHHHHHHHhcccCCCc-
Q 000913 474 ISDELRTPFDKSKSHRA-ALTTETYGVGKRELLKANISRELLLMKRNSFVYI-FKLIQIAF-VAVVYMTLFLRTKMHKD- 549 (1226)
Q Consensus 474 ~~~~l~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~-~r~~~~~~-~ali~gtlf~~~~~~~~- 549 (1226)
..+. . ...+...... .......+.-.|.-. ..+.....-..... .-+..... +..+....|+..+.+..
T Consensus 776 ~~~~-~-~~~~~~~~~~~~~ee~~~G~v~~~vY-----~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~ 848 (1381)
T KOG0054|consen 776 EEEK-S-KDEKEEEDKLVQEEERETGKVSWSVY-----KKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGE 848 (1381)
T ss_pred cccc-c-ccccchhhHHHHHHHHhcCEeeHHHH-----HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 0000 0 0000000000 000000010011110 11111100111111 11111111 11122222322222211
Q ss_pred --cc--ccccch----hhHHHHHHHHHHHhHHHHHHHHHhhchhhHHhhcccccChhhHHHHHHHHHhcHHHHHHHHHHH
Q 000913 550 --TV--TDGGIF----AGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVF 621 (1226)
Q Consensus 550 --~~--~~~~~~----~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~ 621 (1226)
.. .+...| ..+.+...++.++.++......+.....++. -+-+.+++.|++|+++
T Consensus 849 ~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~------------~ml~~Ilrapm~FFdt----- 911 (1381)
T KOG0054|consen 849 DNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHD------------KLLNSILRAPMSFFDT----- 911 (1381)
T ss_pred cccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHhCcchhcCC-----
Confidence 00 111112 1111222222222222221111111111111 1234455667666654
Q ss_pred HhhhcccCcCchhHHHHHHHHHHHH---------HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchh
Q 000913 622 LSYYVVGYDSNAGRFFKQYALLLGV---------NQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIK 692 (1226)
Q Consensus 622 i~Y~~~gl~~~~~~f~~~~l~~~~~---------~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip 692 (1226)
...||.+..|...... ..+...+..+++.+ .+++...-.+++.++.++..
T Consensus 912 ---------TP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~---~vi~~~~P~fli~~~pl~v~--------- 970 (1381)
T KOG0054|consen 912 ---------TPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGIL---VVISYVTPWFLIAIIPLGVI--------- 970 (1381)
T ss_pred ---------CCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHH---HHhhHHhHHHHHHHHHHHHH---------
Confidence 3457766665432211 11111222221111 11111111111111111111
Q ss_pred HHHHHHHhHcHHHHHHHHHHHHhhcCCcccccc-CCCccchhhhhhhccCccc--------------------ccchhHH
Q 000913 693 KWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFT-QDSSETLGVQVLKSRGFFA--------------------HEYWYWL 751 (1226)
Q Consensus 693 ~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~-~~~~~~~G~~~L~~~~~~~--------------------~~~~~w~ 751 (1226)
||.--..|.-.+--.....+....... ..+....|...++.++-.. .....|+
T Consensus 971 ------~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWl 1044 (1381)
T KOG0054|consen 971 ------YYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWL 1044 (1381)
T ss_pred ------HHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 111111111111111111111100000 0001112333333333110 0112354
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCCccccc-----ccCCCCCCCCCCCCCCcccc
Q 000913 752 GLGA--LFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLS-----TLGGSSNHNTRSGSTDDIRG 824 (1226)
Q Consensus 752 ~~g~--l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 824 (1226)
++-. +...++++. ... ++-.......+ +.+++. .+++...+..+. ..+.++
T Consensus 1045 a~Rle~ig~~~v~~~-al~-~vl~~~~~~~~------------------g~vGLslsyal~lt~~l~~~vR~--~~elEn 1102 (1381)
T KOG0054|consen 1045 AVRLELLGNLVVLIA-ALF-AVLLPSGLISP------------------GLVGLSLSYALQLTGLLQWLVRQ--SSELEN 1102 (1381)
T ss_pred HHHHHHHHHHHHHHH-HHH-HHHccCCCCCc------------------chHHHHHHHHHHHHHHHHHHHHH--HHHHHh
Confidence 4322 211211111 111 11111100000 000000 000000000000 000111
Q ss_pred cccccchhh---hhhhhcCCCcCCCCccCC--CCceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEE
Q 000913 825 QQSSSQSLS---LAEAEASRPKKKGMVLPF--EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTAL 899 (1226)
Q Consensus 825 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al 899 (1226)
.+.++++.. ....+...........+. ....++|+|++.+|.. +-..+|+|||++|+|||++||
T Consensus 1103 ~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp-----------~lp~VLk~is~~I~p~eKVGI 1171 (1381)
T KOG0054|consen 1103 NMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRP-----------NLPLVLKGISFTIKPGEKVGI 1171 (1381)
T ss_pred cchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCC-----------CCcchhcCceEEEcCCceEEE
Confidence 111111111 101111111111111122 2357999999877752 224699999999999999999
Q ss_pred EccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCH
Q 000913 900 MGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDS 976 (1226)
Q Consensus 900 ~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~ 976 (1226)
+|++|||||||+++|.+... +.+|.|.|||.++.+ ..+|+.++.+||||.++. -|||.|| |+..
T Consensus 1172 VGRTGaGKSSL~~aLFRl~e--~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFs-GTvR~NL----------DPf~ 1238 (1381)
T KOG0054|consen 1172 VGRTGAGKSSLILALFRLVE--PAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFS-GTVRFNL----------DPFD 1238 (1381)
T ss_pred eCCCCCCHHHHHHHHHHhcC--ccCCeEEEcCeecccccHHHHHhcCeeeCCCCceec-Ccccccc----------Cccc
Confidence 99999999999999998876 468999999998765 467888999999998765 3555544 5666
Q ss_pred HHHHHHHHHHHHHcCCCcccccccC------CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 000913 977 ETRKMFIDEVMELVELNPLRQSLVG------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1050 (1226)
Q Consensus 977 ~~~~~~v~~~l~~l~l~~~~~~~~g------~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l 1050 (1226)
+..++.++++||.++|.+...++.+ .++..++|-||||.+|+||||+++++||+|||+|+++|+++...|+++|
T Consensus 1239 e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tI 1318 (1381)
T KOG0054|consen 1239 EYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTI 1318 (1381)
T ss_pred ccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHH
Confidence 6777889999999999876544332 2356799999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 000913 1051 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1051 ~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
|+-.+ +||||++.|+.+. + .-+|||+||++ |+++.+|.+
T Consensus 1319 R~~F~-dcTVltIAHRl~T-V-md~DrVlVld~-G~v~EfdsP 1357 (1381)
T KOG0054|consen 1319 REEFK-DCTVLTIAHRLNT-V-MDSDRVLVLDA-GRVVEFDSP 1357 (1381)
T ss_pred HHHhc-CCeEEEEeeccch-h-hhcCeEEEeeC-CeEeecCCh
Confidence 99764 7999999999874 4 45899999997 799999986
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-68 Score=716.34 Aligned_cols=211 Identities=22% Similarity=0.304 Sum_probs=179.0
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000913 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1226)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1226)
..++|+||+++|+. +...+|+|||++|+|||++||+|+||||||||+++|.|... +.+|+|.|||.+
T Consensus 1236 g~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~d 1302 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LERGRILIDGCD 1302 (1622)
T ss_pred CcEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCEe
Confidence 46999999999852 12359999999999999999999999999999999999876 568999999998
Q ss_pred CCh---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 000913 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLP 1003 (1226)
Q Consensus 934 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~g~~ 1003 (1226)
+.+ ..+|+.++||||++.++.. |++|||.+.. ..+ ++.++++++..++.+.. |+.+|..
T Consensus 1303 I~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge~ 1371 (1622)
T PLN03130 1303 ISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHN----DADLWESLERAHLKDVIRRNSLGLDAEVSEA 1371 (1622)
T ss_pred cccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CCC----HHHHHHHHHHcCcHHHHHhCccccCccccCC
Confidence 754 4678889999999999875 9999997531 122 34478888888876543 4445543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 000913 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1226)
Q Consensus 1004 ~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~ 1083 (1226)
..+||||||||++|||||+++|+||+||||||+||+++.+.|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1372 -G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd~ 1447 (1622)
T PLN03130 1372 -GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLDA 1447 (1622)
T ss_pred -CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999985 4899999999986 4566999999986
Q ss_pred CcEEEEeCCC
Q 000913 1084 GGQEIYVGPL 1093 (1226)
Q Consensus 1084 Gg~~~y~G~~ 1093 (1226)
|+++.+|+.
T Consensus 1448 -G~IvE~Gt~ 1456 (1622)
T PLN03130 1448 -GRVVEFDTP 1456 (1622)
T ss_pred -CEEEEeCCH
Confidence 799999985
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-68 Score=713.17 Aligned_cols=217 Identities=19% Similarity=0.305 Sum_probs=180.2
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCc------------
Q 000913 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------------ 921 (1226)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~------------ 921 (1226)
..++|+||+|+|+.. ++..+|+|+||+|+||+++||+||||||||||+++|.|...+.
T Consensus 1164 g~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~ 1233 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHT 1233 (1466)
T ss_pred ceEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccc
Confidence 469999999999632 1246999999999999999999999999999999999976631
Q ss_pred ----------------------------------------eEEEEEEEcCccCCh---hhhcceeeEeecCCCCCCCCCH
Q 000913 922 ----------------------------------------YITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTI 958 (1226)
Q Consensus 922 ----------------------------------------~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv 958 (1226)
+.+|+|.+||.++.+ ..+++.+|||+|++.++. .|+
T Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTI 1312 (1466)
T PTZ00265 1234 NDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSI 1312 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccH
Confidence 147999999998643 567889999999998885 799
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000913 959 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1031 (1226)
Q Consensus 959 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~L 1031 (1226)
+|||.|+. ++.+. +.++++++..++.++ .|+.+|.. ...||||||||++|||||+++|+||+|
T Consensus 1313 reNI~~g~-----~~at~----eeI~~A~k~A~l~~fI~~LP~GydT~VGe~-G~~LSGGQkQRIaIARALlr~p~ILLL 1382 (1466)
T PTZ00265 1313 YENIKFGK-----EDATR----EDVKRACKFAAIDEFIESLPNKYDTNVGPY-GKSLSGGQKQRIAIARALLREPKILLL 1382 (1466)
T ss_pred HHHHhcCC-----CCCCH----HHHHHHHHHcCCHHHHHhCccccCCccCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999862 22333 347777777776553 36677754 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEecC---cE-EEEeCCC
Q 000913 1032 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG---GQ-EIYVGPL 1093 (1226)
Q Consensus 1032 DEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~t~H~p~~~i~~~~D~v~ll~~G---g~-~~y~G~~ 1093 (1226)
|||||+||+.+.+.|++.|+++. .+|+|+|+++|+++ ..+.+|+|++|++| |+ ++..|+-
T Consensus 1383 DEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1383 DEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 99999999999999999999986 36899999999985 56789999999973 66 4578873
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-67 Score=708.55 Aligned_cols=211 Identities=20% Similarity=0.275 Sum_probs=178.8
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000913 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1226)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1226)
..++|+||+++|+. +.+.+|+|||++|+|||.+||+|+||||||||+++|.|... +.+|+|.|||.+
T Consensus 1233 g~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~d 1299 (1495)
T PLN03232 1233 GSIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDCD 1299 (1495)
T ss_pred CcEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCEE
Confidence 46999999999852 12469999999999999999999999999999999999876 568999999998
Q ss_pred CCh---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 000913 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLP 1003 (1226)
Q Consensus 934 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~g~~ 1003 (1226)
+.+ ..+++.++||||++.+++. |++|||.+.. +.+ ++.++++++..++.+.. |+.+|..
T Consensus 1300 i~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1368 (1495)
T PLN03232 1300 VAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHN----DADLWEALERAHIKDVIDRNPFGLDAEVSEG 1368 (1495)
T ss_pred hhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecCC
Confidence 753 4678889999999998875 9999997531 122 33478888888886543 4445543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 000913 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1226)
Q Consensus 1004 ~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~ 1083 (1226)
..+||||||||++|||||+++|+||+||||||+||+++.+.|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1369 -G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~~ 1444 (1495)
T PLN03232 1369 -GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLSS 1444 (1495)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999875 4899999999986 4566999999986
Q ss_pred CcEEEEeCCC
Q 000913 1084 GGQEIYVGPL 1093 (1226)
Q Consensus 1084 Gg~~~y~G~~ 1093 (1226)
|+++..|+.
T Consensus 1445 -G~ivE~Gt~ 1453 (1495)
T PLN03232 1445 -GQVLEYDSP 1453 (1495)
T ss_pred -CEEEEECCH
Confidence 799999975
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-67 Score=615.77 Aligned_cols=491 Identities=26% Similarity=0.332 Sum_probs=378.0
Q ss_pred eEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHH
Q 000913 118 EVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLA 197 (1226)
Q Consensus 118 ~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~ 197 (1226)
=++.+||++++... .....+++||||.+.|||+++|+|.|||||||+.++
T Consensus 5 lL~V~nL~v~~~~~------------------------------~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~ 54 (539)
T COG1123 5 LLEVENLTVEFATD------------------------------GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALA 54 (539)
T ss_pred eEEEeceEEEEecC------------------------------CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHH
Confidence 47899999998652 122569999999999999999999999999999999
Q ss_pred HhcCCCCC-CCceeEEEEcCccCCCCCc-------cceEEEecCCC--CCCCCCCHHHHHHHHhHhcCCCchhhHhHHHH
Q 000913 198 LAGKLDPT-LKVSGTVTYNGHDMDEFVP-------QRTAAYISQHD--NHIGEMTVRETLAFSARCQGVGTRYEMLTELA 267 (1226)
Q Consensus 198 L~G~~~~~-~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~ 267 (1226)
|.|.+++. ...+|+|.++|.++..... .+.++||+|++ .+-|-+||.+-|.=..+.++...
T Consensus 55 i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~--------- 125 (539)
T COG1123 55 LMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS--------- 125 (539)
T ss_pred HhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcccc---------
Confidence 99999986 4568999999998755543 26799999996 56777899888876554443211
Q ss_pred HHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHhhHHHHHHHHhcCCcccee
Q 000913 268 RREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFM 347 (1226)
Q Consensus 268 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllL 347 (1226)
.++...++.++|+..||++.... ++++..|||||||||.||+||+.+|++|++
T Consensus 126 ------------------------~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG~rQRv~iAmALa~~P~LLIa 178 (539)
T COG1123 126 ------------------------RAEARKRAVELLEQVGLPDPERR---DRYPHQLSGGMRQRVMIAMALALKPKLLIA 178 (539)
T ss_pred ------------------------HHHHHHHHHHHHHHcCCCChhhh---ccCCcccCchHHHHHHHHHHHhCCCCEEEE
Confidence 12234456788999999986654 678899999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEEEecChhHHHHHHHhcCCCCCCCC
Q 000913 348 DEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRK 427 (1226)
Q Consensus 348 DEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~ 427 (1226)
|||||+||..++.+|++.|+++.+ ..++.++.++|+..-+.+++|+|+||.+|++|+.|+.+++..-+
T Consensus 179 DEPTTaLDvt~q~qIL~llk~l~~-e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p----------- 246 (539)
T COG1123 179 DEPTTALDVTTQAQILDLLKDLQR-ELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNP----------- 246 (539)
T ss_pred CCCccccCHHHHHHHHHHHHHHHH-HcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhcc-----------
Confidence 999999999999999999999886 45677777999999999999999999999999999999885410
Q ss_pred ChHHHHHHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhcCCccccchhhccccccccCCcHHHHHHH
Q 000913 428 GVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKA 507 (1226)
Q Consensus 428 ~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 507 (1226)
..||... +.++ .|.
T Consensus 247 ----------------------~hpYT~~----Ll~a---------------~p~------------------------- 260 (539)
T COG1123 247 ----------------------QHPYTRG----LLAA---------------VPR------------------------- 260 (539)
T ss_pred ----------------------CCcccHH----HHhh---------------CCC-------------------------
Confidence 0111000 0000 000
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCcccccccchhhHHHHHHHHHHHhHHHHHHHHHhhchhhH
Q 000913 508 NISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFY 587 (1226)
Q Consensus 508 ~~~R~~~~~~R~~~~~~~r~~~~~~~ali~gtlf~~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~~~~~~~~~~~~vf~ 587 (1226)
....
T Consensus 261 --------------------------------------~~~~-------------------------------------- 264 (539)
T COG1123 261 --------------------------------------LGDE-------------------------------------- 264 (539)
T ss_pred --------------------------------------cccc--------------------------------------
Confidence 0000
Q ss_pred HhhcccccChhhHHHHHHHHHhcHHHHHHHHHHHHhhhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Q 000913 588 KQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVA 667 (1226)
Q Consensus 588 kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~l~~~~~~~~~~~l~~~ia~~~~~~~vA 667 (1226)
T Consensus 265 -------------------------------------------------------------------------------- 264 (539)
T COG1123 265 -------------------------------------------------------------------------------- 264 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhcccCccchhHHHHHHHhHcHHHHHHHHHHHHhhcCCccccccCCCccchhhhhhhccCcccccc
Q 000913 668 NTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEY 747 (1226)
Q Consensus 668 ~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~ 747 (1226)
..
T Consensus 265 ------------------------------------------------------~~------------------------ 266 (539)
T COG1123 265 ------------------------------------------------------KI------------------------ 266 (539)
T ss_pred ------------------------------------------------------cc------------------------
Confidence 00
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCCcccccccCCCCCCCCCCCCCCccccccc
Q 000913 748 WYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQS 827 (1226)
Q Consensus 748 ~~w~~~g~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (1226)
. .. +
T Consensus 267 -----------------------------------------------~-------------------~~--~-------- 270 (539)
T COG1123 267 -----------------------------------------------I-------------------RL--P-------- 270 (539)
T ss_pred -----------------------------------------------c-------------------cc--c--------
Confidence 0 00 0
Q ss_pred ccchhhhhhhhcCCCcCCCCccCCCCceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcH
Q 000913 828 SSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGK 907 (1226)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGK 907 (1226)
. .. ..+ ...-++.+|++..+..++.+. . ...+...+++||||++++||++||+|+|||||
T Consensus 271 ----~------------~~-~~~-~~~ll~V~~l~k~y~~~~~~~-~-~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGK 330 (539)
T COG1123 271 ----R------------RG-PLR-AEPLLSVRNLSKRYGSRKGLF-V-RERGEVKAVDDVSFDLREGETLGLVGESGSGK 330 (539)
T ss_pred ----c------------cc-ccc-cCceeEeeeeeeeeccccccc-c-ccccceeeeeeeeeEecCCCEEEEECCCCCCH
Confidence 0 00 000 011245566655554332111 0 00134579999999999999999999999999
Q ss_pred HHHHhhhcCCCCCceEEEEEEEcCccC--C---hhhhcceeeEeecCCC--CCCCCCHHHHHHHHHHhhcCCCCCHHHHH
Q 000913 908 TTLMDVLAGRKTGGYITGNITISGYPK--K---QETFARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRK 980 (1226)
Q Consensus 908 TTLl~~L~g~~~~~~~~G~i~i~g~~~--~---~~~~~~~~gyv~Q~~~--~~~~lTv~E~l~f~~~lr~~~~~~~~~~~ 980 (1226)
|||.++|+|+.. +..|.|.++|.+. + ....++.+-+++||+. +.|.+||++.+.-....... ....+++
T Consensus 331 STlar~i~gL~~--P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~ 406 (539)
T COG1123 331 STLARILAGLLP--PSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERR 406 (539)
T ss_pred HHHHHHHhCCCC--CCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHH
Confidence 999999999987 4689999999762 1 1234556778888864 67899999999876444332 2356677
Q ss_pred HHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q 000913 981 MFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GR 1058 (1226)
Q Consensus 981 ~~v~~~l~~l~l~~-~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~ 1058 (1226)
++|.++++.++|.+ +.+++ +.+||||||||++|||||+.+|++|++|||||.||+..+..|.++|+++.++ |.
T Consensus 407 ~rv~~ll~~VgL~~~~l~ry-----P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~ 481 (539)
T COG1123 407 ARVAELLELVGLPPEFLDRY-----PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGL 481 (539)
T ss_pred HHHHHHHHHcCCCHHHHhcC-----chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCC
Confidence 88999999999986 56665 4579999999999999999999999999999999999999999999999755 99
Q ss_pred EEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 000913 1059 TVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1059 tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
|.|++|||... +.+.|||+++|.+ |++|..||.
T Consensus 482 t~lfISHDl~v-V~~i~drv~vm~~-G~iVE~G~~ 514 (539)
T COG1123 482 TYLFISHDLAV-VRYIADRVAVMYD-GRIVEEGPT 514 (539)
T ss_pred EEEEEeCCHHH-HHhhCceEEEEEC-CeEEEeCCH
Confidence 99999999975 7889999999986 799999974
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-64 Score=681.21 Aligned_cols=211 Identities=18% Similarity=0.209 Sum_probs=179.0
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000913 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1226)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1226)
..++|+||+++|+.. ...+|+|||++|+|||++||+|+||||||||+++|.|... +.+|+|.|||.+
T Consensus 1283 g~I~f~nVsf~Y~~~-----------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~d 1349 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRED-----------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLN 1349 (1522)
T ss_pred CcEEEEEEEEEeCCC-----------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEE
Confidence 469999999999632 1359999999999999999999999999999999999876 568999999998
Q ss_pred CCh---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 000913 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLP 1003 (1226)
Q Consensus 934 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~g~~ 1003 (1226)
+.+ ..+++.++||||++.++.. |++|||.... +.+ ++.++++++.+++.+.. |+.+|..
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1418 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYS----DEEVWWALELAHLKTFVSALPDKLDHECAEG 1418 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCC----HHHHHHHHHHcCcHHHHhhCccCCCceecCC
Confidence 754 4678889999999999875 9999996211 222 23478889988886543 4455543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 000913 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1226)
Q Consensus 1004 ~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~ 1083 (1226)
..+||||||||++|||||+++|+||+||||||+||+++...|++.|++.. +++|||+++|+++ ....+|+|++|++
T Consensus 1419 -G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~ 1494 (1522)
T TIGR00957 1419 -GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDK 1494 (1522)
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 36799999999999999999999999999999999999999999999875 4899999999986 4667999999986
Q ss_pred CcEEEEeCCC
Q 000913 1084 GGQEIYVGPL 1093 (1226)
Q Consensus 1084 Gg~~~y~G~~ 1093 (1226)
|+++..|+.
T Consensus 1495 -G~IvE~G~~ 1503 (1522)
T TIGR00957 1495 -GEVAEFGAP 1503 (1522)
T ss_pred -CEEEEECCH
Confidence 799999985
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-66 Score=630.47 Aligned_cols=456 Identities=21% Similarity=0.294 Sum_probs=347.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCceeEEEEcCccCCCCCc----cceEEEecCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP--TLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIG 239 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~ 239 (1226)
.+|+|||+.+++|++++|+|||||||||||++|+|.++| + +|+|.++|.++..... ++.++||+|++.+++
T Consensus 19 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 95 (506)
T PRK13549 19 KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTY---EGEIIFEGEELQASNIRDTERAGIAIIHQELALVK 95 (506)
T ss_pred EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCCCCHHHHHHCCeEEEEeccccCC
Confidence 499999999999999999999999999999999999986 5 9999999998765432 356999999988899
Q ss_pred CCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 000913 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1226)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1226)
.+||+||+.|+......+.. . ..+....++.+++.+||++..+..+
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~-~------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~--- 141 (506)
T PRK13549 96 ELSVLENIFLGNEITPGGIM-D------------------------------YDAMYLRAQKLLAQLKLDINPATPV--- 141 (506)
T ss_pred CCcHHHHhhhcccccccCCc-C------------------------------HHHHHHHHHHHHHHcCCCCCcccch---
Confidence 99999999987532110000 0 0001124567899999987777655
Q ss_pred ccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEc
Q 000913 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1226)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1226)
..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ . +++||.++|+..++.+++|+|++|+
T Consensus 142 --~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-~~tvi~~tH~~~~~~~~~d~v~~l~ 217 (506)
T PRK13549 142 --GNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-H-GIACIYISHKLNEVKAISDTICVIR 217 (506)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCcHHHHHHhcCEEEEEE
Confidence 46999999999999999999999999999999999999999999999854 3 4455667888899999999999999
Q ss_pred CCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhc
Q 000913 400 DGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELR 479 (1226)
Q Consensus 400 ~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~~~~~~~l~ 479 (1226)
+|++++.|+.+++.. .+..+.
T Consensus 218 ~G~i~~~~~~~~~~~--------------------------------------------~~~~~~--------------- 238 (506)
T PRK13549 218 DGRHIGTRPAAGMTE--------------------------------------------DDIITM--------------- 238 (506)
T ss_pred CCEEeeecccccCCH--------------------------------------------HHHHHH---------------
Confidence 999998876432100 000000
Q ss_pred CCccccchhhccccccccCCcHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCcccccccchhh
Q 000913 480 TPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAG 559 (1226)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~ali~gtlf~~~~~~~~~~~~~~~~~g 559 (1226)
++ + .. .
T Consensus 239 -------------------------------------------------------------~~--~--~~-~-------- 244 (506)
T PRK13549 239 -------------------------------------------------------------MV--G--RE-L-------- 244 (506)
T ss_pred -------------------------------------------------------------hh--C--cC-c--------
Confidence 00 0 00 0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhchhhHHhhcccccChhhHHHHHHHHHhcHHHHHHHHHHHHhhhcccCcCchhHHHHH
Q 000913 560 ATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQ 639 (1226)
Q Consensus 560 ~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~ 639 (1226)
T Consensus 245 -------------------------------------------------------------------------------- 244 (506)
T PRK13549 245 -------------------------------------------------------------------------------- 244 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHhHcHHHHHHHHHHHHhhcCC
Q 000913 640 YALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGH 719 (1226)
Q Consensus 640 ~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~ 719 (1226)
+
T Consensus 245 ----------------------------------------------------~--------------------------- 245 (506)
T PRK13549 245 ----------------------------------------------------T--------------------------- 245 (506)
T ss_pred ----------------------------------------------------c---------------------------
Confidence 0
Q ss_pred ccccccCCCccchhhhhhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCC
Q 000913 720 SWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGG 799 (1226)
Q Consensus 720 ~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1226)
. . .+ .
T Consensus 246 --------------------------~--------------------------~-~~--~-------------------- 250 (506)
T PRK13549 246 --------------------------A--------------------------L-YP--R-------------------- 250 (506)
T ss_pred --------------------------c--------------------------c-cc--c--------------------
Confidence 0 0 00 0
Q ss_pred cccccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCcCCCCccCCCCceeEEeceeeEEeccchhhhcccccC
Q 000913 800 NVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLED 879 (1226)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~ 879 (1226)
. . . . + ....++++|+++.++.. +
T Consensus 251 ----------------~---------------~------~--~-------~-~~~~l~~~~l~~~~~~~----------~ 273 (506)
T PRK13549 251 ----------------E---------------P------H--T-------I-GEVILEVRNLTAWDPVN----------P 273 (506)
T ss_pred ----------------c---------------c------c--C-------C-CCceEEEecCccccccc----------c
Confidence 0 0 0 0 0 00125566776554210 1
Q ss_pred ceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh----hhhcceeeEeecCC---CC
Q 000913 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQND---IH 952 (1226)
Q Consensus 880 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~---~~ 952 (1226)
++.+|+||||+|++||++||+||||||||||+++|+|...+ +.+|+|.++|.++.. ...++.+||++|++ .+
T Consensus 274 ~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 352 (506)
T PRK13549 274 HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGI 352 (506)
T ss_pred ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCC
Confidence 23589999999999999999999999999999999998641 257999999976532 12345689999985 46
Q ss_pred CCCCCHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 000913 953 SPFVTIYESLLFSAWLRLSP--EVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 1029 (1226)
Q Consensus 953 ~~~lTv~E~l~f~~~lr~~~--~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il 1029 (1226)
++.+||.|++.+........ ..+.++.++.++++++.+++. +..+..+ ..|||||||||+||++|+.+|+||
T Consensus 353 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrv~lA~al~~~p~ll 427 (506)
T PRK13549 353 VPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI-----ARLSGGNQQKAVLAKCLLLNPKIL 427 (506)
T ss_pred cCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc-----ccCCHHHHHHHHHHHHHhhCCCEE
Confidence 77899999998753211110 112333446688999999996 4666664 569999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 000913 1030 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1094 (1226)
Q Consensus 1030 ~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~~ 1094 (1226)
||||||+|||+.++..++++|++++++|+|||++||+++ ++.+.||++++|++ |+++..|+..
T Consensus 428 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 490 (506)
T PRK13549 428 ILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHE-GKLKGDLINH 490 (506)
T ss_pred EEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEeccc
Confidence 999999999999999999999999888999999999987 57889999999986 6888888764
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-65 Score=626.76 Aligned_cols=449 Identities=20% Similarity=0.316 Sum_probs=344.9
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc----cceEEEecCCCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1226)
++|+|+||.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.+
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (501)
T PRK10762 18 KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQL 94 (501)
T ss_pred EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCC
Confidence 4999999999999999999999999999999999999998 9999999988754321 35699999998899999
Q ss_pred CHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 000913 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1226)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1226)
||+||+.|+..........+ ..+....++.+++.+||++..|..++
T Consensus 95 tv~e~l~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~---- 140 (501)
T PRK10762 95 TIAENIFLGREFVNRFGRID------------------------------WKKMYAEADKLLARLNLRFSSDKLVG---- 140 (501)
T ss_pred cHHHHhhhccccccccCccC------------------------------HHHHHHHHHHHHHHcCCCCCccCchh----
Confidence 99999998653210000000 00112245678999999887776554
Q ss_pred CCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCC
Q 000913 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1226)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1226)
.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.. . +++||.++|+..++.+++|+|++|++|
T Consensus 141 -~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-~~tvii~sHd~~~~~~~~d~i~~l~~G 217 (501)
T PRK10762 141 -ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-Q-GRGIVYISHRLKEIFEICDDVTVFRDG 217 (501)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 5999999999999999999999999999999999999999999998854 3 445666788999999999999999999
Q ss_pred eEEEecChhHHHHHHHhcCCCCCCCCChHHHHHHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhcCC
Q 000913 402 QIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTP 481 (1226)
Q Consensus 402 ~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~~~~~~~l~~~ 481 (1226)
+++..|+.+++.. .+..+.
T Consensus 218 ~i~~~~~~~~~~~--------------------------------------------~~~~~~----------------- 236 (501)
T PRK10762 218 QFIAEREVADLTE--------------------------------------------DSLIEM----------------- 236 (501)
T ss_pred EEEEecCcCcCCH--------------------------------------------HHHHHH-----------------
Confidence 9998775432100 000000
Q ss_pred ccccchhhccccccccCCcHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCcccccccchhhHH
Q 000913 482 FDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGAT 561 (1226)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~ali~gtlf~~~~~~~~~~~~~~~~~g~l 561 (1226)
++ . ..
T Consensus 237 -----------------------------------------------------------~~--~--~~------------ 241 (501)
T PRK10762 237 -----------------------------------------------------------MV--G--RK------------ 241 (501)
T ss_pred -----------------------------------------------------------hc--C--CC------------
Confidence 00 0 00
Q ss_pred HHHHHHHHHhHHHHHHHHHhhchhhHHhhcccccChhhHHHHHHHHHhcHHHHHHHHHHHHhhhcccCcCchhHHHHHHH
Q 000913 562 FFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYA 641 (1226)
Q Consensus 562 ff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~l 641 (1226)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK10762 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHhHcHHHHHHHHHHHHhhcCCcc
Q 000913 642 LLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW 721 (1226)
Q Consensus 642 ~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~ 721 (1226)
.
T Consensus 242 -------------------------------------------------------------------------------~ 242 (501)
T PRK10762 242 -------------------------------------------------------------------------------L 242 (501)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred ccccCCCccchhhhhhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCCcc
Q 000913 722 KKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNV 801 (1226)
Q Consensus 722 ~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1226)
.. . .+ .
T Consensus 243 ~~-~-------------------------------------------------~~----------------------~-- 248 (501)
T PRK10762 243 ED-Q-------------------------------------------------YP----------------------R-- 248 (501)
T ss_pred cc-c-------------------------------------------------cc----------------------c--
Confidence 00 0 00 0
Q ss_pred cccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCcCCCCccCCCCceeEEeceeeEEeccchhhhcccccCce
Q 000913 802 QLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKL 881 (1226)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~ 881 (1226)
. + . +..+..++++|++.
T Consensus 249 --------------~--~-------------------~----------~~~~~~l~~~~l~~------------------ 265 (501)
T PRK10762 249 --------------L--D-------------------K----------APGEVRLKVDNLSG------------------ 265 (501)
T ss_pred --------------c--c-------------------c----------CCCCcEEEEeCccc------------------
Confidence 0 0 0 00001245556541
Q ss_pred EEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh----hhhcceeeEeecCC---CCCC
Q 000913 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQND---IHSP 954 (1226)
Q Consensus 882 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~---~~~~ 954 (1226)
.+|+|+||++++||++||+|||||||||||++|+|... +.+|+|.++|.++.. ...++.+||++|++ .+++
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~--p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~ 343 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP--RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVL 343 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcC
Confidence 26999999999999999999999999999999999876 468999999977532 12345699999996 4678
Q ss_pred CCCHHHHHHHHHHhhcC---CCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 000913 955 FVTIYESLLFSAWLRLS---PEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1030 (1226)
Q Consensus 955 ~lTv~E~l~f~~~lr~~---~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~ 1030 (1226)
.+||.|++.+....... .....++.++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|+|||
T Consensus 344 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lll 418 (501)
T PRK10762 344 GMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLI 418 (501)
T ss_pred CCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEE
Confidence 89999999875321110 0122233455688999999995 5666664 4699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCCc
Q 000913 1031 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 1095 (1226)
Q Consensus 1031 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~~~ 1095 (1226)
|||||+|||+.++..+++.|++++++|+|||++||++. ++.+.||++++|++ |++++.|+...
T Consensus 419 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 481 (501)
T PRK10762 419 LDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTREQ 481 (501)
T ss_pred EcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecccc
Confidence 99999999999999999999999878999999999987 57889999999986 68998887643
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-65 Score=628.83 Aligned_cols=457 Identities=22% Similarity=0.297 Sum_probs=346.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc----cceEEEecCCCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1226)
++|+|+||.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.+
T Consensus 19 ~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 95 (510)
T PRK09700 19 HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDEL 95 (510)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCC
Confidence 4999999999999999999999999999999999999998 9999999998765432 24699999998899999
Q ss_pred CHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 000913 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1226)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1226)
||+||+.++...... .... + .. ...+....++.+++.+||++..++.++
T Consensus 96 tv~e~l~~~~~~~~~--~~~~--------------~--~~---------~~~~~~~~~~~~l~~~gl~~~~~~~~~---- 144 (510)
T PRK09700 96 TVLENLYIGRHLTKK--VCGV--------------N--II---------DWREMRVRAAMMLLRVGLKVDLDEKVA---- 144 (510)
T ss_pred cHHHHhhhccccccc--cccc--------------c--cc---------CHHHHHHHHHHHHHHcCCCCCcccchh----
Confidence 999999875421000 0000 0 00 000112346678999999877776554
Q ss_pred CCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCC
Q 000913 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1226)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1226)
+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++. .+ ++||.++|+..++..++|+|++|++|
T Consensus 145 -~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g-~tiiivsHd~~~~~~~~d~v~~l~~G 221 (510)
T PRK09700 145 -NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EG-TAIVYISHKLAEIRRICDRYTVMKDG 221 (510)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC-CEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 6999999999999999999999999999999999999999999999865 34 45566888999999999999999999
Q ss_pred eEEEecChhHHHHHHHhcCCCCCCCCChHHHHHHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhcCC
Q 000913 402 QIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTP 481 (1226)
Q Consensus 402 ~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~~~~~~~l~~~ 481 (1226)
++++.|+++++.. .+..+.
T Consensus 222 ~i~~~g~~~~~~~--------------------------------------------~~~~~~----------------- 240 (510)
T PRK09700 222 SSVCSGMVSDVSN--------------------------------------------DDIVRL----------------- 240 (510)
T ss_pred EEeeecchhhCCH--------------------------------------------HHHHHH-----------------
Confidence 9999887653210 000000
Q ss_pred ccccchhhccccccccCCcHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCcccccccchhhHH
Q 000913 482 FDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGAT 561 (1226)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~ali~gtlf~~~~~~~~~~~~~~~~~g~l 561 (1226)
+. + .. ..
T Consensus 241 -----------------------------------------------------------~~--~--~~-~~--------- 247 (510)
T PRK09700 241 -----------------------------------------------------------MV--G--RE-LQ--------- 247 (510)
T ss_pred -----------------------------------------------------------hc--C--CC-cc---------
Confidence 00 0 00 00
Q ss_pred HHHHHHHHHhHHHHHHHHHhhchhhHHhhcccccChhhHHHHHHHHHhcHHHHHHHHHHHHhhhcccCcCchhHHHHHHH
Q 000913 562 FFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYA 641 (1226)
Q Consensus 562 ff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~l 641 (1226)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK09700 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHhHcHHHHHHHHHHHHhhcCCcc
Q 000913 642 LLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW 721 (1226)
Q Consensus 642 ~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~ 721 (1226)
..+
T Consensus 248 ------------------------------------------------------------------------~~~----- 250 (510)
T PRK09700 248 ------------------------------------------------------------------------NRF----- 250 (510)
T ss_pred ------------------------------------------------------------------------ccc-----
Confidence 000
Q ss_pred ccccCCCccchhhhhhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCCcc
Q 000913 722 KKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNV 801 (1226)
Q Consensus 722 ~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1226)
. . ..+
T Consensus 251 ~----~----------------------------------------------~~~------------------------- 255 (510)
T PRK09700 251 N----A----------------------------------------------MKE------------------------- 255 (510)
T ss_pred c----c----------------------------------------------ccc-------------------------
Confidence 0 0 000
Q ss_pred cccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCcCCCCccCCCCceeEEeceeeEEeccchhhhcccccCce
Q 000913 802 QLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKL 881 (1226)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~ 881 (1226)
.. . . . + .+..++++|+++.+ +
T Consensus 256 -------------~~---------------~------~---~------~-~~~~l~~~~l~~~~-------------~-- 276 (510)
T PRK09700 256 -------------NV---------------S------N---L------A-HETVFEVRNVTSRD-------------R-- 276 (510)
T ss_pred -------------cc---------------c------c---C------C-CCcEEEEeCccccC-------------C--
Confidence 00 0 0 0 0 00136667776432 1
Q ss_pred EEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh----hhhcceeeEeecC---CCCCC
Q 000913 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQN---DIHSP 954 (1226)
Q Consensus 882 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~---~~~~~ 954 (1226)
.+|+|+||++++|++++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.+|||+|+ ..+++
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 354 (510)
T PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK--RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFP 354 (510)
T ss_pred CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcC
Confidence 27999999999999999999999999999999999876 468999999976532 1234568999998 35778
Q ss_pred CCCHHHHHHHHHHhh---cCC--C-CCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000913 955 FVTIYESLLFSAWLR---LSP--E-VDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 1027 (1226)
Q Consensus 955 ~lTv~E~l~f~~~lr---~~~--~-~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~ 1027 (1226)
.+||+|++.+....+ ... . ......++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|+
T Consensus 355 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~ 429 (510)
T PRK09700 355 NFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI-----TELSGGNQQKVLISKWLCCCPE 429 (510)
T ss_pred CCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc-----ccCChHHHHHHHHHHHHhcCCC
Confidence 899999998753211 000 0 11223335678999999996 6677664 4699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 000913 1028 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1028 il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
||||||||+|||+.++..+++.|++++++|.|||++|||+. ++.+.||++++|++ |++++.++.
T Consensus 430 lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 430 VIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred EEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 99999999999999999999999999878999999999986 57889999999986 688888764
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-65 Score=634.02 Aligned_cols=226 Identities=21% Similarity=0.233 Sum_probs=182.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++..... ... ....+.+|+||||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 313 ~L~~~~l~~~y~~~~~~-~~~-~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i 388 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGL-LNR-VTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRI 388 (623)
T ss_pred eEEEeeeEEEEcCCCcc-ccc-cCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence 37888998877421000 000 0012469999999999999999999999999999999999876 4689999999865
Q ss_pred Ch------hhhcceeeEeecCC--CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCC
Q 000913 935 KQ------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 1005 (1226)
Q Consensus 935 ~~------~~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~ 1005 (1226)
.. ..+++.++||+|++ .+++.+||.|++.+....+. ....++.++++.++++.++|. +..++. +
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----~ 461 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRY-----P 461 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCC-----c
Confidence 32 12356799999997 47888999999988643321 112344556789999999996 456665 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecC
Q 000913 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1226)
Q Consensus 1006 ~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~G 1084 (1226)
..|||||||||+||+||+.+|+||||||||+|||+.++..|+++|+++.++ |.|||++|||++ .+.+.+|++++|++
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~- 539 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL- 539 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999765 899999999987 47889999999986
Q ss_pred cEEEEeCCC
Q 000913 1085 GQEIYVGPL 1093 (1226)
Q Consensus 1085 g~~~y~G~~ 1093 (1226)
|++++.|+.
T Consensus 540 G~iv~~g~~ 548 (623)
T PRK10261 540 GQIVEIGPR 548 (623)
T ss_pred CEEEEecCH
Confidence 799999975
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-64 Score=621.38 Aligned_cols=217 Identities=22% Similarity=0.325 Sum_probs=175.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEc-Ccc-
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS-GYP- 933 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~-g~~- 933 (1226)
++++|+++.++... .+.+.+|+|+||+|++|+++||+||||||||||+++|+|..+ +.+|+|.++ |.+
T Consensus 280 l~~~~l~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~ 349 (520)
T TIGR03269 280 IKVRNVSKRYISVD--------RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEW 349 (520)
T ss_pred EEEeccEEEeccCC--------CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCcc
Confidence 66778877763100 022469999999999999999999999999999999999876 458999996 532
Q ss_pred --CCh------hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCc-----cccccc
Q 000913 934 --KKQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-----LRQSLV 1000 (1226)
Q Consensus 934 --~~~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-----~~~~~~ 1000 (1226)
... ...++.+||++|++.+++.+||+|++.+...+. ...+..++++.++++.++|.+ ..++.
T Consensus 350 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~- 424 (520)
T TIGR03269 350 VDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY- 424 (520)
T ss_pred ccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC-
Confidence 111 123456899999988888999999998753221 223334466889999999975 34554
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEE
Q 000913 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELF 1079 (1226)
Q Consensus 1001 g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ 1079 (1226)
+..|||||||||+||+||+.+|+||||||||+|||+.++..+++.|++++++ |.|||++||++. .+.+.||+++
T Consensus 425 ----~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~ 499 (520)
T TIGR03269 425 ----PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAA 499 (520)
T ss_pred ----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEE
Confidence 4579999999999999999999999999999999999999999999999764 899999999987 4788999999
Q ss_pred EEecCcEEEEeCCC
Q 000913 1080 LMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1080 ll~~Gg~~~y~G~~ 1093 (1226)
+|++ |+++..|+.
T Consensus 500 ~l~~-G~i~~~g~~ 512 (520)
T TIGR03269 500 LMRD-GKIVKIGDP 512 (520)
T ss_pred EEEC-CEEEEECCH
Confidence 9986 688888864
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-64 Score=619.85 Aligned_cols=452 Identities=20% Similarity=0.275 Sum_probs=342.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc----cceEEEecCCCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1226)
.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.+
T Consensus 25 ~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 101 (510)
T PRK15439 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNL 101 (510)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCC
Confidence 4999999999999999999999999999999999999998 9999999988765432 24699999999899999
Q ss_pred CHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 000913 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1226)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1226)
||+||+.|+.... + + ....++.+++.+||++..+..++
T Consensus 102 tv~e~l~~~~~~~------~---~-----------------------------~~~~~~~~l~~~~l~~~~~~~~~---- 139 (510)
T PRK15439 102 SVKENILFGLPKR------Q---A-----------------------------SMQKMKQLLAALGCQLDLDSSAG---- 139 (510)
T ss_pred cHHHHhhcccccc------h---H-----------------------------HHHHHHHHHHHcCCCccccCChh----
Confidence 9999998853110 0 0 01235667889999877776554
Q ss_pred CCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCC
Q 000913 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1226)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1226)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ . +++||.++|+..++.++||+|++|++|
T Consensus 140 -~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tiiivtHd~~~~~~~~d~i~~l~~G 216 (510)
T PRK15439 140 -SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-Q-GVGIVFISHKLPEIRQLADRISVMRDG 216 (510)
T ss_pred -hCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 5999999999999999999999999999999999999999999999864 3 445666888999999999999999999
Q ss_pred eEEEecChhHHHHHHHhcCCCCCCCCChHHHHHHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhcCC
Q 000913 402 QIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTP 481 (1226)
Q Consensus 402 ~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~~~~~~~l~~~ 481 (1226)
++++.|+++++... + ..+.+..
T Consensus 217 ~i~~~g~~~~~~~~---------------~-----------------------------~~~~~~~-------------- 238 (510)
T PRK15439 217 TIALSGKTADLSTD---------------D-----------------------------IIQAITP-------------- 238 (510)
T ss_pred EEEEecChHHcCHH---------------H-----------------------------HHHHHhC--------------
Confidence 99999877653210 0 0000000
Q ss_pred ccccchhhccccccccCCcHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCcccccccchhhHH
Q 000913 482 FDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGAT 561 (1226)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~ali~gtlf~~~~~~~~~~~~~~~~~g~l 561 (1226)
+ ..... ...
T Consensus 239 ------------------------------------~--------------------------~~~~~-~~~-------- 247 (510)
T PRK15439 239 ------------------------------------A--------------------------AREKS-LSA-------- 247 (510)
T ss_pred ------------------------------------c--------------------------ccccc-ccc--------
Confidence 0 00000 000
Q ss_pred HHHHHHHHHhHHHHHHHHHhhchhhHHhhcccccChhhHHHHHHHHHhcHHHHHHHHHHHHhhhcccCcCchhHHHHHHH
Q 000913 562 FFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYA 641 (1226)
Q Consensus 562 ff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~l 641 (1226)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK15439 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHhHcHHHHHHHHHHHHhhcCCcc
Q 000913 642 LLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW 721 (1226)
Q Consensus 642 ~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~ 721 (1226)
... .
T Consensus 248 -------------------------------------------------~~~---------------------------~ 251 (510)
T PRK15439 248 -------------------------------------------------SQK---------------------------L 251 (510)
T ss_pred -------------------------------------------------ccc---------------------------c
Confidence 000 0
Q ss_pred ccccCCCccchhhhhhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCCcc
Q 000913 722 KKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNV 801 (1226)
Q Consensus 722 ~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1226)
. ..+ +
T Consensus 252 ~-----------------~~~---------------------------------~------------------------- 256 (510)
T PRK15439 252 W-----------------LEL---------------------------------P------------------------- 256 (510)
T ss_pred c-----------------ccc---------------------------------c-------------------------
Confidence 0 000 0
Q ss_pred cccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCcCCCCccCCCCceeEEeceeeEEeccchhhhcccccCce
Q 000913 802 QLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKL 881 (1226)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~ 881 (1226)
.. . .. . +..+..++.+|++.
T Consensus 257 -------------~~---------------~------~~--~------~~~~~~l~~~~l~~------------------ 276 (510)
T PRK15439 257 -------------GN---------------R------RQ--Q------AAGAPVLTVEDLTG------------------ 276 (510)
T ss_pred -------------cc---------------c------cc--c------CCCCceEEEeCCCC------------------
Confidence 00 0 00 0 00011255666641
Q ss_pred EEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCChh----hhcceeeEeecCC---CCCC
Q 000913 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFARISGYCEQND---IHSP 954 (1226)
Q Consensus 882 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~---~~~~ 954 (1226)
.+|+|||+++++|+++||+|||||||||||++|+|... +.+|+|.++|.++... ..++.++|++|++ .+++
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~ 354 (510)
T PRK15439 277 EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP--ARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYL 354 (510)
T ss_pred CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccC
Confidence 14899999999999999999999999999999999875 4579999999765321 1235689999984 4778
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000913 955 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1033 (1226)
Q Consensus 955 ~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDE 1033 (1226)
.+|+.|++......+..........++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|+||||||
T Consensus 355 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDE 429 (510)
T PRK15439 355 DAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDE 429 (510)
T ss_pred CCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECC
Confidence 899999986431111110011222345688999999997 6666664 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 000913 1034 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1094 (1226)
Q Consensus 1034 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~~ 1094 (1226)
||+|||+.++..+++.|++++++|.|||+++|++. ++.+.||++++|++ |++++.|..+
T Consensus 430 Pt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~-G~i~~~~~~~ 488 (510)
T PRK15439 430 PTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQ-GEISGALTGA 488 (510)
T ss_pred CCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence 99999999999999999999888999999999997 58889999999985 7898888653
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-64 Score=622.16 Aligned_cols=464 Identities=22% Similarity=0.291 Sum_probs=345.6
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CceeEEEEcCccCCCCCc-------cceEEEecCCC
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEFVP-------QRTAAYISQHD 235 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d 235 (1226)
+++|+|+||.+++||+++|+|||||||||||++|+|.++|.. ..+|+|.++|.++..... ++.++||+|++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 459999999999999999999999999999999999998610 128999999998754321 24699999986
Q ss_pred C--CCCCCCHHHHHHHHhHhc-CCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc--
Q 000913 236 N--HIGEMTVRETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-- 310 (1226)
Q Consensus 236 ~--~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-- 310 (1226)
. +++.+||+|++.+..... +.. ..+....++.+++.+||++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~ 147 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMR----------------------------------REAARGEILNCLDRVGIRQAA 147 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHCCCCChH
Confidence 4 567789999988653221 100 0011234577889999975
Q ss_pred -cccccccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHH
Q 000913 311 -CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETY 389 (1226)
Q Consensus 311 -~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~ 389 (1226)
..+.. +..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++..+ .+||.++|+..++.
T Consensus 148 ~~~~~~-----~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tvi~vtHd~~~~~ 221 (529)
T PRK15134 148 KRLTDY-----PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELN-MGLLFITHNLSIVR 221 (529)
T ss_pred HHHhhC-----CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcC-CeEEEEcCcHHHHH
Confidence 23444 456999999999999999999999999999999999999999999999865334 45566788889999
Q ss_pred hhcCcEEEEcCCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhch
Q 000913 390 DLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFH 469 (1226)
Q Consensus 390 ~~~D~iilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~ 469 (1226)
.++|+|++|++|++++.|+++++... |. .+ ..
T Consensus 222 ~~~dri~~l~~G~i~~~g~~~~~~~~--------~~-------------------------~~--------~~------- 253 (529)
T PRK15134 222 KLADRVAVMQNGRCVEQNRAATLFSA--------PT-------------------------HP--------YT------- 253 (529)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHhhC--------CC-------------------------CH--------HH-------
Confidence 99999999999999999877654210 00 00 00
Q ss_pred hhhhhHHhhcCCccccchhhccccccccCCcHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Q 000913 470 VGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKD 549 (1226)
Q Consensus 470 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~ali~gtlf~~~~~~~~ 549 (1226)
+. ++...
T Consensus 254 -----------------------------------------~~----------------------------~~~~~---- 260 (529)
T PRK15134 254 -----------------------------------------QK----------------------------LLNSE---- 260 (529)
T ss_pred -----------------------------------------HH----------------------------HHHhC----
Confidence 00 00000
Q ss_pred ccccccchhhHHHHHHHHHHHhHHHHHHHHHhhchhhHHhhcccccChhhHHHHHHHHHhcHHHHHHHHHHHHhhhcccC
Q 000913 550 TVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGY 629 (1226)
Q Consensus 550 ~~~~~~~~~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl 629 (1226)
T Consensus 261 -------------------------------------------------------------------------------- 260 (529)
T PRK15134 261 -------------------------------------------------------------------------------- 260 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHhHcHHHHHHH
Q 000913 630 DSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQN 709 (1226)
Q Consensus 630 ~~~~~~f~~~~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~ 709 (1226)
+
T Consensus 261 --------------------------------------------------------------~----------------- 261 (529)
T PRK15134 261 --------------------------------------------------------------P----------------- 261 (529)
T ss_pred --------------------------------------------------------------c-----------------
Confidence 0
Q ss_pred HHHHHhhcCCccccccCCCccchhhhhhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeecccc
Q 000913 710 AIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIE 789 (1226)
Q Consensus 710 al~~nef~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~ 789 (1226)
. . .+.
T Consensus 262 -----------------~-----~-----------------------------------------~~~------------ 266 (529)
T PRK15134 262 -----------------S-----G-----------------------------------------DPV------------ 266 (529)
T ss_pred -----------------c-----c-----------------------------------------ccc------------
Confidence 0 0 000
Q ss_pred ccccccccCCcccccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCcCCCCccCCCCceeEEeceeeEEeccc
Q 000913 790 SNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPE 869 (1226)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~ 869 (1226)
. + . . . .+..++++|+++.++...
T Consensus 267 --------------------------~--~-------------------~---~-~------~~~~l~~~~l~~~~~~~~ 289 (529)
T PRK15134 267 --------------------------P--L-------------------P---E-P------ASPLLDVEQLQVAFPIRK 289 (529)
T ss_pred --------------------------c--c-------------------C---C-C------CCCcccccCcEEEeecCc
Confidence 0 0 0 0 0 000245566666653110
Q ss_pred hhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh---h---hhccee
Q 000913 870 EMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---E---TFARIS 943 (1226)
Q Consensus 870 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~---~~~~~~ 943 (1226)
.. .++ ..+.+.+|+||||+|++|+++||+||||||||||+++|+|..+ .+|+|.++|.++.. . .+++.+
T Consensus 290 ~~-~~~-~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i 364 (529)
T PRK15134 290 GI-LKR-TVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRI 364 (529)
T ss_pred cc-ccc-ccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhce
Confidence 00 000 0012469999999999999999999999999999999999863 47999999976532 1 134568
Q ss_pred eEeecCC--CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHH
Q 000913 944 GYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAV 1020 (1226)
Q Consensus 944 gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~LSgGqrqrl~ia~ 1020 (1226)
||++|++ .+++.+||+|++.+....+.. ..+..+.++.+.++++.++|. +..+.. +..|||||||||+||+
T Consensus 365 ~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~ 438 (529)
T PRK15134 365 QVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRY-----PAEFSGGQRQRIAIAR 438 (529)
T ss_pred EEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcC-----CccCCHHHHHHHHHHH
Confidence 9999996 377889999999986533211 123344456788999999997 456665 3579999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 000913 1021 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1021 ~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
+|+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||++. .+.+.||++++|++ |+++..|+.
T Consensus 439 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 510 (529)
T PRK15134 439 ALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQGDC 510 (529)
T ss_pred HHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999999999999865 899999999986 47788999999986 689888874
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-64 Score=615.65 Aligned_cols=456 Identities=19% Similarity=0.275 Sum_probs=343.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCceeEEEEcCccCCCCCc----cceEEEecCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP--TLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIG 239 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~ 239 (1226)
++|+|||+.+++|++++|+|||||||||||++|+|.++| + +|+|.++|+++..... ++.++||+|++.+++
T Consensus 15 ~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (500)
T TIGR02633 15 KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTW---DGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVP 91 (500)
T ss_pred EeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCCCCHHHHHhCCEEEEeeccccCC
Confidence 499999999999999999999999999999999999986 5 8999999998765432 356999999988999
Q ss_pred CCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccc-cccccc
Q 000913 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA-DTMVGD 318 (1226)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-dt~vg~ 318 (1226)
.+||+||+.|+......+.... ..+....++.+++.+||++.. +..
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~--- 138 (500)
T TIGR02633 92 ELSVAENIFLGNEITLPGGRMA------------------------------YNAMYLRAKNLLRELQLDADNVTRP--- 138 (500)
T ss_pred CCcHHHHHHhhccccccccccC------------------------------HHHHHHHHHHHHHHcCCCCCcccCc---
Confidence 9999999988643210000000 000112456789999997654 333
Q ss_pred cccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEE
Q 000913 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1226)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1226)
+..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|++++. . +++||.++|+..++.++||+|++|
T Consensus 139 --~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tviiitHd~~~~~~~~d~i~~l 214 (500)
T TIGR02633 139 --VGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-H-GVACVYISHKLNEVKAVCDTICVI 214 (500)
T ss_pred --hhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCcHHHHHHhCCEEEEE
Confidence 446999999999999999999999999999999999999999999999864 3 445666888999999999999999
Q ss_pred cCCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhh
Q 000913 399 SDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDEL 478 (1226)
Q Consensus 399 ~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~~~~~~~l 478 (1226)
++|++++.|+.+++.. ....+
T Consensus 215 ~~G~i~~~~~~~~~~~--------------------------------------------~~~~~--------------- 235 (500)
T TIGR02633 215 RDGQHVATKDMSTMSE--------------------------------------------DDIIT--------------- 235 (500)
T ss_pred eCCeEeeecCcccCCH--------------------------------------------HHHHH---------------
Confidence 9999987664321000 00000
Q ss_pred cCCccccchhhccccccccCCcHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCcccccccchh
Q 000913 479 RTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFA 558 (1226)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~ali~gtlf~~~~~~~~~~~~~~~~~ 558 (1226)
.+. + ..
T Consensus 236 -------------------------------------------------------------~~~--~--~~--------- 241 (500)
T TIGR02633 236 -------------------------------------------------------------MMV--G--RE--------- 241 (500)
T ss_pred -------------------------------------------------------------HHh--C--cc---------
Confidence 000 0 00
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHhhchhhHHhhcccccChhhHHHHHHHHHhcHHHHHHHHHHHHhhhcccCcCchhHHHH
Q 000913 559 GATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFK 638 (1226)
Q Consensus 559 g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~f~~ 638 (1226)
T Consensus 242 -------------------------------------------------------------------------------- 241 (500)
T TIGR02633 242 -------------------------------------------------------------------------------- 241 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHhHcHHHHHHHHHHHHhhcC
Q 000913 639 QYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLG 718 (1226)
Q Consensus 639 ~~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~ 718 (1226)
.+
T Consensus 242 ----------------------------------------------------~~-------------------------- 243 (500)
T TIGR02633 242 ----------------------------------------------------IT-------------------------- 243 (500)
T ss_pred ----------------------------------------------------cc--------------------------
Confidence 00
Q ss_pred CccccccCCCccchhhhhhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccC
Q 000913 719 HSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIG 798 (1226)
Q Consensus 719 ~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1226)
. . .+
T Consensus 244 ------------~----------~--------------------------------~~---------------------- 247 (500)
T TIGR02633 244 ------------S----------L--------------------------------YP---------------------- 247 (500)
T ss_pred ------------c----------c--------------------------------cc----------------------
Confidence 0 0 00
Q ss_pred CcccccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCcCCCCccCCCCceeEEeceeeEEeccchhhhccccc
Q 000913 799 GNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLE 878 (1226)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~ 878 (1226)
.. + ... ....++++|+++.+...
T Consensus 248 ----------------~~--~---------------------~~~--------~~~~l~~~~l~~~~~~~---------- 270 (500)
T TIGR02633 248 ----------------HE--P---------------------HEI--------GDVILEARNLTCWDVIN---------- 270 (500)
T ss_pred ----------------cc--c---------------------cCC--------CCceEEEeCCccccccc----------
Confidence 00 0 000 00125667776554210
Q ss_pred CceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh----hhhcceeeEeecCC---C
Q 000913 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQND---I 951 (1226)
Q Consensus 879 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~---~ 951 (1226)
+++.+|+|+||++++||++||+|||||||||||++|+|..++ +.+|+|.++|.++.. ...++.+||++|+. .
T Consensus 271 ~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 349 (500)
T TIGR02633 271 PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHG 349 (500)
T ss_pred ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCC
Confidence 123589999999999999999999999999999999998752 147999999977532 22356789999995 4
Q ss_pred CCCCCCHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000913 952 HSPFVTIYESLLFSAWLRLS--PEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1028 (1226)
Q Consensus 952 ~~~~lTv~E~l~f~~~lr~~--~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~i 1028 (1226)
+++.+||+|++.++..-... ........++.++++++.+++.+ ..++.+ ..|||||||||+||++|+.+|++
T Consensus 350 l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~l 424 (500)
T TIGR02633 350 IVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI-----GRLSGGNQQKAVLAKMLLTNPRV 424 (500)
T ss_pred cCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc-----ccCCHHHHHHHHHHHHHhhCCCE
Confidence 78889999999875321110 11222334566889999999964 456653 56999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 000913 1029 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1029 l~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
|||||||+|||+.++..+++.|++++++|.|||++|||++ ++.+.||++++|++ |+++..++.
T Consensus 425 llLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~~~~ 487 (500)
T TIGR02633 425 LILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGE-GKLKGDFVN 487 (500)
T ss_pred EEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEcc
Confidence 9999999999999999999999999888999999999987 58889999999986 688877754
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-64 Score=614.14 Aligned_cols=451 Identities=21% Similarity=0.308 Sum_probs=342.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc----cceEEEecCCCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1226)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.+
T Consensus 18 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (501)
T PRK11288 18 KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEM 94 (501)
T ss_pred EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCC
Confidence 4999999999999999999999999999999999999998 9999999988753321 35799999998899999
Q ss_pred CHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 000913 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1226)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1226)
||+||+.++......+.. + ..+....++.+++.+||++..+..+
T Consensus 95 tv~~~l~~~~~~~~~~~~--------------------~-----------~~~~~~~~~~~l~~~~l~~~~~~~~----- 138 (501)
T PRK11288 95 TVAENLYLGQLPHKGGIV--------------------N-----------RRLLNYEAREQLEHLGVDIDPDTPL----- 138 (501)
T ss_pred CHHHHHHhcccccccCCC--------------------C-----------HHHHHHHHHHHHHHcCCCCCcCCch-----
Confidence 999999986421000000 0 0011224567889999986666544
Q ss_pred CCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCC
Q 000913 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1226)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1226)
..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|++++. . +++||.++|+..++..++|+|++|++|
T Consensus 139 ~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tiiiitHd~~~~~~~~d~i~~l~~G 216 (501)
T PRK11288 139 KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-E-GRVILYVSHRMEEIFALCDAITVFKDG 216 (501)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998754 3 445666788889999999999999999
Q ss_pred eEEEecChhHHHHHHHhcCCCCCCCCChHHHHHHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhcCC
Q 000913 402 QIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTP 481 (1226)
Q Consensus 402 ~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~~~~~~~l~~~ 481 (1226)
+++..++..+. . +.++..+.
T Consensus 217 ~i~~~~~~~~~--------------------------------------~-----~~~~~~~~----------------- 236 (501)
T PRK11288 217 RYVATFDDMAQ--------------------------------------V-----DRDQLVQA----------------- 236 (501)
T ss_pred EEEeecCcccc--------------------------------------C-----CHHHHHHH-----------------
Confidence 99864421000 0 00000000
Q ss_pred ccccchhhccccccccCCcHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCcccccccchhhHH
Q 000913 482 FDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGAT 561 (1226)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~ali~gtlf~~~~~~~~~~~~~~~~~g~l 561 (1226)
+. . ..
T Consensus 237 -----------------------------------------------------------~~--~--~~------------ 241 (501)
T PRK11288 237 -----------------------------------------------------------MV--G--RE------------ 241 (501)
T ss_pred -----------------------------------------------------------hc--C--CC------------
Confidence 00 0 00
Q ss_pred HHHHHHHHHhHHHHHHHHHhhchhhHHhhcccccChhhHHHHHHHHHhcHHHHHHHHHHHHhhhcccCcCchhHHHHHHH
Q 000913 562 FFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYA 641 (1226)
Q Consensus 562 ff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~l 641 (1226)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK11288 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHhHcHHHHHHHHHHHHhhcCCcc
Q 000913 642 LLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSW 721 (1226)
Q Consensus 642 ~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~ 721 (1226)
.
T Consensus 242 -------------------------------------------------------------------------------~ 242 (501)
T PRK11288 242 -------------------------------------------------------------------------------I 242 (501)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred ccccCCCccchhhhhhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCCcc
Q 000913 722 KKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNV 801 (1226)
Q Consensus 722 ~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1226)
. .. ..
T Consensus 243 ~-----------------------~~---------------------------~~------------------------- 247 (501)
T PRK11288 243 G-----------------------DI---------------------------YG------------------------- 247 (501)
T ss_pred c-----------------------cc---------------------------cc-------------------------
Confidence 0 00 00
Q ss_pred cccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCcCCCCccCCCCceeEEeceeeEEeccchhhhcccccCce
Q 000913 802 QLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKL 881 (1226)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~ 881 (1226)
. .+ . +..+..++++|+++.
T Consensus 248 --------------~-~~-----------------------~------~~~~~~l~~~~~~~~----------------- 266 (501)
T PRK11288 248 --------------Y-RP-----------------------R------PLGEVRLRLDGLKGP----------------- 266 (501)
T ss_pred --------------c-cc-----------------------c------CCCCcEEEEeccccC-----------------
Confidence 0 00 0 000013555666421
Q ss_pred EEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh----hhhcceeeEeecCC---CCCC
Q 000913 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQND---IHSP 954 (1226)
Q Consensus 882 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~---~~~~ 954 (1226)
.+++|+|+++++||++||+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.++|++|++ .+++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 344 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIP 344 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcC
Confidence 37999999999999999999999999999999999875 468999999976532 12345689999986 4788
Q ss_pred CCCHHHHHHHHHHhhcCC-C--CCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 000913 955 FVTIYESLLFSAWLRLSP-E--VDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1030 (1226)
Q Consensus 955 ~lTv~E~l~f~~~lr~~~-~--~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~ 1030 (1226)
.+|+.|++.+........ . ......++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|+|||
T Consensus 345 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~lll 419 (501)
T PRK11288 345 VHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKVIL 419 (501)
T ss_pred CCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCEEE
Confidence 899999998753221100 0 11223345688999999994 5667664 4699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCCcc
Q 000913 1031 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRH 1096 (1226)
Q Consensus 1031 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~~~~ 1096 (1226)
|||||+|||+.++..++++|++++++|.|||++|||+. ++.+.+|++++|++ |++++.|..++.
T Consensus 420 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~~ 483 (501)
T PRK11288 420 LDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQA 483 (501)
T ss_pred EcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEccccC
Confidence 99999999999999999999999888999999999987 58889999999985 689999987543
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-62 Score=660.57 Aligned_cols=210 Identities=19% Similarity=0.243 Sum_probs=178.1
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000913 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1226)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1226)
..++|+||+++|+. +.+.+|+|||++|+|||++||+|+||||||||+++|+|... .+|+|.|||.+
T Consensus 1216 g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 47999999999863 12469999999999999999999999999999999999864 47999999998
Q ss_pred CCh---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 000913 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLP 1003 (1226)
Q Consensus 934 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~g~~ 1003 (1226)
+.+ ..+++.++||||++.+++. |+||||.... .. .++.++++++.++|.+.. |+.+|.
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~----tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e- 1349 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QW----SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVD- 1349 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------CC----CHHHHHHHHHHCCCHHHHHhCcccccccccc-
Confidence 754 4577889999999999875 9999995321 11 234588999999986543 444554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 000913 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1226)
Q Consensus 1004 ~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~ 1083 (1226)
+..+||||||||++|||||+++|+||+||||||+||+.+...|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1350 ~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~ 1426 (1490)
T TIGR01271 1350 GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEG 1426 (1490)
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 345799999999999999999999999999999999999999999999875 4799999999985 4567999999986
Q ss_pred CcEEEEeCCC
Q 000913 1084 GGQEIYVGPL 1093 (1226)
Q Consensus 1084 Gg~~~y~G~~ 1093 (1226)
|+++.+|++
T Consensus 1427 -G~ivE~g~p 1435 (1490)
T TIGR01271 1427 -SSVKQYDSI 1435 (1490)
T ss_pred -CEEEEeCCH
Confidence 799999975
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-62 Score=652.98 Aligned_cols=211 Identities=23% Similarity=0.259 Sum_probs=179.4
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000913 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1226)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1226)
..|+|+||+++|+. +...+|+||||+|+|||++||+|+||||||||+++|.|... +.+|+|.|||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 46999999999852 12359999999999999999999999999999999999876 568999999998
Q ss_pred CCh---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 000913 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLP 1003 (1226)
Q Consensus 934 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~g~~ 1003 (1226)
+.. ..+++.+|||||++.++.. ||+|||... .+.+ ++.++++++.+++.+.. |+.+|..
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~ 1442 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEAS----SAEVWAALELVGLRERVASESEGIDSRVLEG 1442 (1560)
T ss_pred cccCCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCCC----HHHHHHHHHHCCChHHHhhCcccccccccCC
Confidence 753 5678899999999998875 999999531 1222 34588999999987653 4555553
Q ss_pred CCCCCCHHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 000913 1004 GVSGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1226)
Q Consensus 1004 ~~~~LSgGqrqrl~ia~~L~~~-p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~ 1082 (1226)
..+||||||||++|||||+++ |+||+||||||+||+++.+.|++.|++.. +++|||+++|+++ ....||+|++|+
T Consensus 1443 -G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd 1518 (1560)
T PTZ00243 1443 -GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMD 1518 (1560)
T ss_pred -cCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEE
Confidence 467999999999999999996 89999999999999999999999999875 4799999999985 567899999998
Q ss_pred cCcEEEEeCCC
Q 000913 1083 RGGQEIYVGPL 1093 (1226)
Q Consensus 1083 ~Gg~~~y~G~~ 1093 (1226)
+ |+++..|+.
T Consensus 1519 ~-G~VvE~Gt~ 1528 (1560)
T PTZ00243 1519 H-GAVAEMGSP 1528 (1560)
T ss_pred C-CEEEEECCH
Confidence 6 799999985
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=601.58 Aligned_cols=450 Identities=18% Similarity=0.277 Sum_probs=340.7
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc----cceEEEecCCCCCCCC
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGE 240 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1226)
+++|+|||+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 35999999999999999999999999999999999999998 9999999998754322 3569999999888999
Q ss_pred CCHHHHHHHHhH-hcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 000913 241 MTVRETLAFSAR-CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1226)
Q Consensus 241 lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1226)
+||+||+.++.. ..+.... ..+....++.+++.+||++..+..+
T Consensus 88 ~tv~~~l~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~--- 132 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMFVD--------------------------------QDKMYRDTKAIFDELDIDIDPRAKV--- 132 (491)
T ss_pred CCHHHHhhcccccccccccC--------------------------------HHHHHHHHHHHHHHcCCCCCccCch---
Confidence 999999987632 1110000 0001123567888999987666554
Q ss_pred ccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEc
Q 000913 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1226)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1226)
..|||||||||+||++|+.+|++|||||||+|||+.+..++.+.|++++. .+ .+||.++|+..++.+++|+|++|+
T Consensus 133 --~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g-~tvii~tH~~~~~~~~~d~i~~l~ 208 (491)
T PRK10982 133 --ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RG-CGIVYISHKMEEIFQLCDEITILR 208 (491)
T ss_pred --hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC-CEEEEEecCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999764 34 455567888899999999999999
Q ss_pred CCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhc
Q 000913 400 DGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELR 479 (1226)
Q Consensus 400 ~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~~~~~~~l~ 479 (1226)
+|+++..|+.+++.. .+..+.
T Consensus 209 ~G~i~~~~~~~~~~~--------------------------------------------~~~~~~--------------- 229 (491)
T PRK10982 209 DGQWIATQPLAGLTM--------------------------------------------DKIIAM--------------- 229 (491)
T ss_pred CCEEEeecChhhCCH--------------------------------------------HHHHHH---------------
Confidence 999998876542100 000000
Q ss_pred CCccccchhhccccccccCCcHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCcccccccchhh
Q 000913 480 TPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAG 559 (1226)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~ali~gtlf~~~~~~~~~~~~~~~~~g 559 (1226)
+. + ..
T Consensus 230 -------------------------------------------------------------~~--~--~~---------- 234 (491)
T PRK10982 230 -------------------------------------------------------------MV--G--RS---------- 234 (491)
T ss_pred -------------------------------------------------------------Hh--C--CC----------
Confidence 00 0 00
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhchhhHHhhcccccChhhHHHHHHHHHhcHHHHHHHHHHHHhhhcccCcCchhHHHHH
Q 000913 560 ATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQ 639 (1226)
Q Consensus 560 ~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~ 639 (1226)
T Consensus 235 -------------------------------------------------------------------------------- 234 (491)
T PRK10982 235 -------------------------------------------------------------------------------- 234 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHhHcHHHHHHHHHHHHhhcCC
Q 000913 640 YALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGH 719 (1226)
Q Consensus 640 ~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~ 719 (1226)
..
T Consensus 235 ---------------------------------------------------~~--------------------------- 236 (491)
T PRK10982 235 ---------------------------------------------------LT--------------------------- 236 (491)
T ss_pred ---------------------------------------------------cc---------------------------
Confidence 00
Q ss_pred ccccccCCCccchhhhhhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCC
Q 000913 720 SWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGG 799 (1226)
Q Consensus 720 ~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1226)
. .+ +
T Consensus 237 --~-------------------------------------------------~~--~----------------------- 240 (491)
T PRK10982 237 --Q-------------------------------------------------RF--P----------------------- 240 (491)
T ss_pred --c-------------------------------------------------cc--c-----------------------
Confidence 0 00 0
Q ss_pred cccccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCcCCCCccCCCCceeEEeceeeEEeccchhhhcccccC
Q 000913 800 NVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLED 879 (1226)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~ 879 (1226)
. + . .. + .+..++++|+++..
T Consensus 241 ---------------~---~-------------------~--~~------~-~~~~i~~~~l~~~~-------------- 260 (491)
T PRK10982 241 ---------------D---K-------------------E--NK------P-GEVILEVRNLTSLR-------------- 260 (491)
T ss_pred ---------------c---c-------------------c--CC------C-CCcEEEEeCccccc--------------
Confidence 0 0 0 00 0 01136677776641
Q ss_pred ceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh----hhhcceeeEeecCCC---C
Q 000913 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQNDI---H 952 (1226)
Q Consensus 880 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~---~ 952 (1226)
+.+|+|||+.+++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|+.. +
T Consensus 261 -~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~ 337 (491)
T PRK10982 261 -QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE--KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGI 337 (491)
T ss_pred -CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc--CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCc
Confidence 138999999999999999999999999999999999876 468999999976542 123456899999853 5
Q ss_pred CCCCCHHHHHHHHHH---hhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000913 953 SPFVTIYESLLFSAW---LRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1028 (1226)
Q Consensus 953 ~~~lTv~E~l~f~~~---lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~i 1028 (1226)
++.+|+.++..+... ............++.+.++++.+++. +..+.. +..|||||||||+||++|+.+|+|
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrv~la~al~~~p~i 412 (491)
T PRK10982 338 YAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ-----IGSLSGGNQQKVIIGRWLLTQPEI 412 (491)
T ss_pred ccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccc-----cccCCcHHHHHHHHHHHHhcCCCE
Confidence 778888877433211 01000012233345678899999985 455555 357999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 000913 1029 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1094 (1226)
Q Consensus 1029 l~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~~ 1094 (1226)
|||||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++ |+++..++..
T Consensus 413 llLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~-g~i~~~~~~~ 476 (491)
T PRK10982 413 LMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSN-GLVAGIVDTK 476 (491)
T ss_pred EEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEEC-CEEEEEEccc
Confidence 9999999999999999999999999888999999999987 57889999999986 6888777653
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-61 Score=593.29 Aligned_cols=214 Identities=19% Similarity=0.302 Sum_probs=166.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|.... ..+|+|.++|.+.
T Consensus 260 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~ 325 (490)
T PRK10938 260 RIVLNNGVVSYN-------------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRR 325 (490)
T ss_pred eEEEeceEEEEC-------------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccC
Confidence 378889988763 24599999999999999999999999999999999996531 1479999999764
Q ss_pred Ch----hhhcceeeEeecCCCCCC--CCCHHHHHHHHHHh--hcCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCC
Q 000913 935 KQ----ETFARISGYCEQNDIHSP--FVTIYESLLFSAWL--RLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGV 1005 (1226)
Q Consensus 935 ~~----~~~~~~~gyv~Q~~~~~~--~lTv~E~l~f~~~l--r~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~ 1005 (1226)
.. ...++.+||++|++.++. ..|+++++.+.... ....... ...++.++++++.++|.+ ..+..+
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~----- 399 (490)
T PRK10938 326 GSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPF----- 399 (490)
T ss_pred CCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCch-----
Confidence 21 123467999999875543 35677766543211 1111112 223456889999999987 666653
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCcHHHHH-hcCeEEEEec
Q 000913 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFE-AFDELFLMKR 1083 (1226)
Q Consensus 1006 ~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g-~tvi~t~H~p~~~i~~-~~D~v~ll~~ 1083 (1226)
..|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++| .|||+++|+++ ++.+ .+|++++|++
T Consensus 400 ~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~ 478 (490)
T PRK10938 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPD 478 (490)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecC
Confidence 5799999999999999999999999999999999999999999999998776 46999999986 4655 5899999987
Q ss_pred CcEEEEe
Q 000913 1084 GGQEIYV 1090 (1226)
Q Consensus 1084 Gg~~~y~ 1090 (1226)
|++++.
T Consensus 479 -G~i~~~ 484 (490)
T PRK10938 479 -GDIYRY 484 (490)
T ss_pred -CceEEe
Confidence 565544
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-62 Score=605.48 Aligned_cols=353 Identities=37% Similarity=0.643 Sum_probs=299.9
Q ss_pred CCceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCc-eEEEEEEEc
Q 000913 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITIS 930 (1226)
Q Consensus 852 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~~~G~i~i~ 930 (1226)
.+..+.|+|+++..+.+.. ..+++|+||||.++|||++|||||||||||||||+|+|+..++ ..+|+|.+|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 4567899999998875421 3478999999999999999999999999999999999998764 789999999
Q ss_pred CccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 000913 931 GYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1226)
Q Consensus 931 g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSg 1010 (1226)
|++.....+++.+|||+|+|.+++.+||+|+|.|+|.+|++...+.++++++|+++++.+||.+++|+++|.++.+++||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98888888999999999999999999999999999999999988999999999999999999999999999988899999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 000913 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1226)
Q Consensus 1011 Gqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~ 1090 (1226)
||||||+||.+|++||+||||||||||||+.++..++++|+++|++|+|||||+|||+.+++++||++++|.+ |+++|+
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~ 252 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYS 252 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997 599999
Q ss_pred CCCCcchhhHHHHHHhCCCccCCCCCCCccceeeeecchh--hhhh----hcCCHHHHhhccHHHHHHH-HHHhhhCCCC
Q 000913 1091 GPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAAS--QELA----LGIDFTEHYKRSDLYRRNK-ALIEDLSRPP 1163 (1226)
Q Consensus 1091 G~~~~~~~~~~~~f~~~~~~~~~~~~~npa~~~l~~~~~~--~~~~----~~~~~~~~~~~s~~~~~~~-~~~~~~~~~~ 1163 (1226)
|+. +++++||++. |. +||+++|||||++|+++.. .+.. ........++..+...+.. .....+....
T Consensus 253 G~~----~~~~~ff~~~-G~-~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (613)
T KOG0061|consen 253 GSP----RELLEFFSSL-GF-PCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLEALEKSLSTSK 326 (613)
T ss_pred cCH----HHHHHHHHhC-CC-CCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhHHHHhhhccccc
Confidence 996 5899999998 55 5999999999999988742 1100 0001111111011111110 0001111111
Q ss_pred CCCCCCCCCCccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 000913 1164 PGSKDLYFPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGR 1225 (1226)
Q Consensus 1164 ~~~~~~~~~~~~~~~~~~q~~~l~~r~~~~~~R~~~~~~~r~~~~~~~~l~~g~~~~~~g~~ 1225 (1226)
..+....++||.||+.|++|.+++.+|+|.+...|+++.+++|+++|++||+++++
T Consensus 327 ------~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~ 382 (613)
T KOG0061|consen 327 ------KVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGND 382 (613)
T ss_pred ------ccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Confidence 11112278999999999999999999999999999999999999999999999864
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-59 Score=576.45 Aligned_cols=201 Identities=21% Similarity=0.295 Sum_probs=164.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++ ++.+|+|||++|++|+++||+||||||||||+++|+|... +.+|+|.+++ +
T Consensus 324 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~-~- 386 (556)
T PRK11819 324 VIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGE-T- 386 (556)
T ss_pred EEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECC-c-
Confidence 488899988763 2469999999999999999999999999999999999876 4689999854 2
Q ss_pred ChhhhcceeeEeecCC-CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHH
Q 000913 935 KQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQ 1012 (1226)
Q Consensus 935 ~~~~~~~~~gyv~Q~~-~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~LSgGq 1012 (1226)
..+||++|+. .+++.+||+|++.+...... .... ...+.++++.+++.+ ..+.. +..|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKK-----VGVLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCc-----hhhCCHHH
Confidence 1489999996 67788999999988643221 1111 123457899999964 45555 35799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE-EeC
Q 000913 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 1091 (1226)
Q Consensus 1013 rqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~-y~G 1091 (1226)
||||+||++|+.+|++|||||||+|||+.++..+++.|+++. | |||++||++. .+.+.||++++|++||++. |.|
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g 526 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEG 526 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecC
Confidence 999999999999999999999999999999999999999872 4 8999999987 4778899999998767766 455
Q ss_pred C
Q 000913 1092 P 1092 (1226)
Q Consensus 1092 ~ 1092 (1226)
+
T Consensus 527 ~ 527 (556)
T PRK11819 527 N 527 (556)
T ss_pred C
Confidence 3
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=516.09 Aligned_cols=470 Identities=24% Similarity=0.327 Sum_probs=366.2
Q ss_pred ccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCCCcc-------ceEEEecC
Q 000913 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEFVPQ-------RTAAYISQ 233 (1226)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~I~~nG~~~~~~~~~-------~~~~yv~Q 233 (1226)
....++++|||.+++||.+||+|.||||||-..+.+.|+++.. ...+|+|.|+|.++-....+ ..|+.|+|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 3456999999999999999999999999999999999999763 35589999999987554432 47999999
Q ss_pred CC--CCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccc
Q 000913 234 HD--NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311 (1226)
Q Consensus 234 ~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1226)
++ .+-|-.|+..-|.-..+++... ....++.++-++|+..|+++-
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg~---------------------------------~~~~Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRGL---------------------------------SRAAARARALELLELVGIPEP 147 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhcc---------------------------------cHHHHHHHHHHHHHHcCCCch
Confidence 97 5677778877776655553211 112234456778899999875
Q ss_pred ccccccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhh
Q 000913 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (1226)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~ 391 (1226)
...+ +.++.+|||||||||.||.||+.+|++||.||||++||.....+|.+.|+++-.+ -+-.++.|+|+..-+-.+
T Consensus 148 ~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~-~gMa~lfITHDL~iVr~~ 224 (534)
T COG4172 148 EKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAE-LGMAILFITHDLGIVRKF 224 (534)
T ss_pred hhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHH-hCcEEEEEeccHHHHHHh
Confidence 5433 4678899999999999999999999999999999999999999999999998764 455666799999999999
Q ss_pred cCcEEEEcCCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhh
Q 000913 392 FDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVG 471 (1226)
Q Consensus 392 ~D~iilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~ 471 (1226)
+|+|+||..|+||++|+.+++.. .|. .||.
T Consensus 225 ADrV~VM~~G~ivE~~~t~~lF~--------~Pq-------------------------HpYT----------------- 254 (534)
T COG4172 225 ADRVYVMQHGEIVETGTTETLFA--------APQ-------------------------HPYT----------------- 254 (534)
T ss_pred hhhEEEEeccEEeecCcHHHHhh--------CCC-------------------------ChHH-----------------
Confidence 99999999999999998776521 010 0000
Q ss_pred hhhHHhhcCCccccchhhccccccccCCcHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCccc
Q 000913 472 QKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTV 551 (1226)
Q Consensus 472 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~ali~gtlf~~~~~~~~~~ 551 (1226)
|.++ .
T Consensus 255 ---------------------------------------r~Ll------------------------------~------ 259 (534)
T COG4172 255 ---------------------------------------RKLL------------------------------A------ 259 (534)
T ss_pred ---------------------------------------HHHH------------------------------h------
Confidence 0000 0
Q ss_pred ccccchhhHHHHHHHHHHHhHHHHHHHHHhhchhhHHhhcccccChhhHHHHHHHHHhcHHHHHHHHHHHHhhhcccCcC
Q 000913 552 TDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDS 631 (1226)
Q Consensus 552 ~~~~~~~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~ 631 (1226)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHhHcHHHHHHHHH
Q 000913 632 NAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAI 711 (1226)
Q Consensus 632 ~~~~f~~~~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al 711 (1226)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhcCCccccccCCCccchhhhhhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeecccccc
Q 000913 712 VANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESN 791 (1226)
Q Consensus 712 ~~nef~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 791 (1226)
.| |
T Consensus 260 --ae------------------------------------------------------------P--------------- 262 (534)
T COG4172 260 --AE------------------------------------------------------------P--------------- 262 (534)
T ss_pred --cC------------------------------------------------------------C---------------
Confidence 00 0
Q ss_pred ccccccCCcccccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCcCCCCccCCCCceeEEeceeeEEeccchh
Q 000913 792 EQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEM 871 (1226)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~ 871 (1226)
.+ .+ ....+..|..++.+|+...++.++.+
T Consensus 263 -----~g-------------------~~--------------------------~p~~~~~~~ll~~~~v~v~f~i~~g~ 292 (534)
T COG4172 263 -----SG-------------------DP--------------------------PPLPEDAPVLLEVEDLRVWFPIKGGF 292 (534)
T ss_pred -----CC-------------------CC--------------------------CCCCCCCCceEEecceEEEEecCCcc
Confidence 00 00 00000112345566665555544322
Q ss_pred hhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh------hhhcceeeE
Q 000913 872 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ------ETFARISGY 945 (1226)
Q Consensus 872 ~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gy 945 (1226)
-.. ..+...++++||++.++||.+||+|.||||||||=.+|.+... .+|.|.++|.++.. ...++.+-.
T Consensus 293 ~~r--~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~---s~G~I~F~G~~i~~~~~~~mrplR~~mQv 367 (534)
T COG4172 293 LRR--TVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP---SQGEIRFDGQDIDGLSRKEMRPLRRRMQV 367 (534)
T ss_pred ccc--cchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcC---cCceEEECCccccccChhhhhhhhhhceE
Confidence 110 1133579999999999999999999999999999999999875 35999999988753 235677899
Q ss_pred eecCCC--CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHH
Q 000913 946 CEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVEL 1022 (1226)
Q Consensus 946 v~Q~~~--~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~g~~~~~~LSgGqrqrl~ia~~L 1022 (1226)
|+|||. +.|.+||.+-+.=+.....+ ..+..+++++|.++|+.+||++- ++++ +.++|||||||++|||||
T Consensus 368 VFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~RY-----PhEFSGGQRQRIAIARAl 441 (534)
T COG4172 368 VFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNRY-----PHEFSGGQRQRIAIARAL 441 (534)
T ss_pred EEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhcC-----CcccCcchhhHHHHHHHH
Confidence 999985 77999999988876555443 56788999999999999999863 4444 467999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 000913 1023 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1023 ~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
+.+|++++||||||.||-.-+..|+++|+++. +.|.+-++++||... +-.+||++++|++ |++|..||.
T Consensus 442 iLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~V-vrAl~~~viVm~~-GkiVE~G~~ 511 (534)
T COG4172 442 ILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAV-VRALCHRVIVMRD-GKIVEQGPT 511 (534)
T ss_pred hcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH-HHHhhceEEEEeC-CEEeeeCCH
Confidence 99999999999999999999999999999996 459999999999873 7779999999986 799999985
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-59 Score=576.58 Aligned_cols=198 Identities=17% Similarity=0.254 Sum_probs=164.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++ ++.+|+|+||+|++|++++|+|||||||||||++|+|... +.+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 488999988874 2358999999999999999999999999999999999876 45899999873
Q ss_pred ChhhhcceeeEeecCCC--CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHH
Q 000913 935 KQETFARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTE 1011 (1226)
Q Consensus 935 ~~~~~~~~~gyv~Q~~~--~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~LSgG 1011 (1226)
+.+||++|++. +.+.+||+|++.+.. .. . ..++.++++++.+++. +..+.. +..||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~---~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE---G--DDEQAVRGTLGRLLFSQDDIKKS-----VKVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cC---C--ccHHHHHHHHHHcCCChhHhcCc-----ccccCHH
Confidence 35899999864 456799999986421 11 1 1134578899999994 566665 3579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE-Ee
Q 000913 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YV 1090 (1226)
Q Consensus 1012 qrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~-y~ 1090 (1226)
|||||+||++|+.+|+||+|||||+|||+.+...+++.|+++ +.|||++||++. .+.+.||++++|++ |+++ +.
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~ 517 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFS 517 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcC
Confidence 999999999999999999999999999999999999999986 459999999987 47788999999997 5665 77
Q ss_pred CCC
Q 000913 1091 GPL 1093 (1226)
Q Consensus 1091 G~~ 1093 (1226)
|+.
T Consensus 518 g~~ 520 (530)
T PRK15064 518 GTY 520 (530)
T ss_pred CCH
Confidence 764
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-58 Score=570.49 Aligned_cols=201 Identities=18% Similarity=0.273 Sum_probs=164.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++ ++.+|+|||++|++|+++||+|||||||||||++|+|... +.+|+|.+++ +
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~-~- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGE-T- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECC-c-
Confidence 488899988763 2469999999999999999999999999999999999876 4689999854 2
Q ss_pred ChhhhcceeeEeecCC-CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHH
Q 000913 935 KQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQ 1012 (1226)
Q Consensus 935 ~~~~~~~~~gyv~Q~~-~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~LSgGq 1012 (1226)
..+||++|+. .+++.+||.|++.+...... .... +..+.++++.+++.+ ..+.. +..|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKK-----VGQLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCc-----hhhCCHHH
Confidence 1489999986 47788999999988642211 1111 123557899999964 45555 35799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE-EeC
Q 000913 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVG 1091 (1226)
Q Consensus 1013 rqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~-y~G 1091 (1226)
||||+||++|+.+|++|||||||+|||+.++..+++.|+++. .|||++||++. .+.+.||++++|++||++. +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCC
Confidence 999999999999999999999999999999999999999872 48999999987 4778899999998766766 444
Q ss_pred C
Q 000913 1092 P 1092 (1226)
Q Consensus 1092 ~ 1092 (1226)
+
T Consensus 525 ~ 525 (552)
T TIGR03719 525 N 525 (552)
T ss_pred C
Confidence 4
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-56 Score=556.67 Aligned_cols=197 Identities=22% Similarity=0.347 Sum_probs=161.3
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.+.++|+++.++ ++.+|+|+||.|++|+++||+|||||||||||++|+|... +.+|+|.+++.
T Consensus 312 ~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC--
Confidence 478899988773 2469999999999999999999999999999999999876 46899998641
Q ss_pred ChhhhcceeeEeecCC--CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHH
Q 000913 935 KQETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTE 1011 (1226)
Q Consensus 935 ~~~~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~LSgG 1011 (1226)
..+||++|+. .+.+..|+.+++.- . .. ......+.++++.+++.+ ..+..+ ..||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~--~~----~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---L--AP----QELEQKLRDYLGGFGFQGDKVTEET-----RRFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---h--Cc----hhhHHHHHHHHHHcCCChhHhcCch-----hhCCHH
Confidence 2589999974 34456677776531 1 11 122345788999999963 556553 569999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE-Ee
Q 000913 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YV 1090 (1226)
Q Consensus 1012 qrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~-y~ 1090 (1226)
|||||+||++|+.+|+||||||||+|||+.+...+.+.|+++ . .|||++|||+. .+...||++++|.+ |+++ |.
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~-gtvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~ 509 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--E-GALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFD 509 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcC
Confidence 999999999999999999999999999999999999999987 3 49999999987 47789999999986 5665 88
Q ss_pred CCC
Q 000913 1091 GPL 1093 (1226)
Q Consensus 1091 G~~ 1093 (1226)
|+.
T Consensus 510 g~~ 512 (638)
T PRK10636 510 GDL 512 (638)
T ss_pred CCH
Confidence 874
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-56 Score=556.83 Aligned_cols=202 Identities=23% Similarity=0.323 Sum_probs=164.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++ ++.+|+|+||.|++|+++||+|||||||||||++|+|... +.+|+|.+ |.+.
T Consensus 319 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~ 382 (635)
T PRK11147 319 VFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL 382 (635)
T ss_pred eEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc
Confidence 478899988763 2469999999999999999999999999999999999865 46899998 4322
Q ss_pred ChhhhcceeeEeecCC-CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHH
Q 000913 935 KQETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLSTEQ 1012 (1226)
Q Consensus 935 ~~~~~~~~~gyv~Q~~-~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~LSgGq 1012 (1226)
.+||++|+. .+++.+||.|++.+..... ... .....+.++++.+++. +..++.+ ..|||||
T Consensus 383 -------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 445 (635)
T PRK11147 383 -------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPV-----KALSGGE 445 (635)
T ss_pred -------EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChh-----hhCCHHH
Confidence 489999985 5788899999998753211 011 1123577889988885 3455553 5699999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe-cCcEEEEeC
Q 000913 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-RGGQEIYVG 1091 (1226)
Q Consensus 1013 rqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~-~Gg~~~y~G 1091 (1226)
||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||+. .+...||++++|. +|.-..|.|
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g 521 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVG 521 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccC
Confidence 99999999999999999999999999999999999999876 459999999986 4778999999997 565556666
Q ss_pred CC
Q 000913 1092 PL 1093 (1226)
Q Consensus 1092 ~~ 1093 (1226)
..
T Consensus 522 ~y 523 (635)
T PRK11147 522 GY 523 (635)
T ss_pred CH
Confidence 53
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-56 Score=550.48 Aligned_cols=211 Identities=20% Similarity=0.235 Sum_probs=172.4
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++ + ..|+++|+++++||++||+||||||||||+++|+|... +.+|+|.++
T Consensus 340 ~l~~~~ls~~~~-------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLG-------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEEC-------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe----
Confidence 477888887653 1 24899999999999999999999999999999999876 468999885
Q ss_pred ChhhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 000913 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1226)
Q Consensus 935 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrq 1014 (1226)
..++|++|+..+.+.+||+|++.+.... ... ...++++++.++|.+..++.+ ..|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKNV-----KDLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHH
Confidence 1489999998888889999999875211 111 124678999999988777764 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 000913 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1015 rl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
||+||++|+.+|+||+|||||+|||+.++..+++.|++++++ |+|||+++||+. .+...+|++++|+ | ++...|..
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~-~~~~~g~~ 537 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-G-EPGKHGHA 537 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-C-cceeeeec
Confidence 999999999999999999999999999999999999999764 899999999986 4778899999996 3 77777764
Q ss_pred Ccc---hhhHHHHHHhC
Q 000913 1094 GRH---SCHLISYFEAI 1107 (1226)
Q Consensus 1094 ~~~---~~~~~~~f~~~ 1107 (1226)
... ...+..|++.+
T Consensus 538 ~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 538 SGPMDMREGMNRFLKEL 554 (590)
T ss_pred CCchhHHHHHHHHHHHc
Confidence 322 12344555555
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-55 Score=509.65 Aligned_cols=446 Identities=23% Similarity=0.377 Sum_probs=348.2
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCcc----ceEEEecCCCCCCC
Q 000913 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHIG 239 (1226)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~~ 239 (1226)
..++|+||||.++|||+++|+|.||||||||+|+|+|.++|+ +|+|.+||.+..-..++ .-|+.|.|+..++|
T Consensus 20 gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p 96 (500)
T COG1129 20 GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIATVHQELSLVP 96 (500)
T ss_pred CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEEEeechhccC
Confidence 356999999999999999999999999999999999999999 99999999988655553 46899999999999
Q ss_pred CCCHHHHHHHHhHhcCC-CchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 000913 240 EMTVRETLAFSARCQGV-GTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1226)
Q Consensus 240 ~lTV~E~l~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1226)
+|||.|||.++...... +. .+....+..+..+|+.+|++...++.|++
T Consensus 97 ~LsVaeNifLgre~~~~~g~-------------------------------id~~~m~~~A~~~l~~lg~~~~~~~~v~~ 145 (500)
T COG1129 97 NLSVAENIFLGREPTRRFGL-------------------------------IDRKAMRRRARELLARLGLDIDPDTLVGD 145 (500)
T ss_pred CccHHHHhhcccccccCCCc-------------------------------cCHHHHHHHHHHHHHHcCCCCChhhhhhh
Confidence 99999999887643321 00 01122334567789999997557888875
Q ss_pred cccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEE
Q 000913 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1226)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1226)
||+||||-|.||+|+..+++|++|||||+.|+...+..+++.++++. ..+..||.|+|...|++++||+|.||
T Consensus 146 -----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk--~~Gv~ii~ISHrl~Ei~~i~DritVl 218 (500)
T COG1129 146 -----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK--AQGVAIIYISHRLDEVFEIADRITVL 218 (500)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEcCcHHHHHHhcCEEEEE
Confidence 99999999999999999999999999999999999999999999975 45677788999999999999999999
Q ss_pred cCCeEEEecCh-hHHHHHHHhcCCCCCCCCChHHHHHHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHh
Q 000913 399 SDGQIVYQGPR-ELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDE 477 (1226)
Q Consensus 399 ~~G~iv~~G~~-~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~~~~~~~ 477 (1226)
.||+++..++. .+. +.+++.
T Consensus 219 RDG~~v~~~~~~~~~--------------------------------------------~~~~lv--------------- 239 (500)
T COG1129 219 RDGRVVGTRPTAAET--------------------------------------------SEDELV--------------- 239 (500)
T ss_pred eCCEEeeecccccCC--------------------------------------------CHHHHH---------------
Confidence 99999876542 211 000000
Q ss_pred hcCCccccchhhccccccccCCcHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCcccccccch
Q 000913 478 LRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIF 557 (1226)
Q Consensus 478 l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~ali~gtlf~~~~~~~~~~~~~~~~ 557 (1226)
T Consensus 240 -------------------------------------------------------------------------------- 239 (500)
T COG1129 240 -------------------------------------------------------------------------------- 239 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHhhchhhHHhhcccccChhhHHHHHHHHHhcHHHHHHHHHHHHhhhcccCcCchhHHH
Q 000913 558 AGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFF 637 (1226)
Q Consensus 558 ~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~f~ 637 (1226)
-.|+|=
T Consensus 240 ------------------------------------------------------------------~~MvGr-------- 245 (500)
T COG1129 240 ------------------------------------------------------------------RLMVGR-------- 245 (500)
T ss_pred ------------------------------------------------------------------HHhhCc--------
Confidence 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHhHcHHHHHHHHHHHHhhc
Q 000913 638 KQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFL 717 (1226)
Q Consensus 638 ~~~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~ 717 (1226)
++
T Consensus 246 -----------------------------------------------------------------------------~~- 247 (500)
T COG1129 246 -----------------------------------------------------------------------------EL- 247 (500)
T ss_pred -----------------------------------------------------------------------------ch-
Confidence 00
Q ss_pred CCccccccCCCccchhhhhhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeecccccccccccc
Q 000913 718 GHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRI 797 (1226)
Q Consensus 718 ~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1226)
.. .| + .
T Consensus 248 ----~~------------------------------------------------~~--~--~------------------ 253 (500)
T COG1129 248 ----ED------------------------------------------------LF--P--E------------------ 253 (500)
T ss_pred ----hh------------------------------------------------hc--c--c------------------
Confidence 00 00 0 0
Q ss_pred CCcccccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCcCCCCccCCCCceeEEeceeeEEeccchhhhcccc
Q 000913 798 GGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVL 877 (1226)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~ 877 (1226)
. ... ...+..+++++++..
T Consensus 254 -----------------------------------------~-~~~------~~~~~~l~v~~l~~~------------- 272 (500)
T COG1129 254 -----------------------------------------P-PEE------GIGEPVLEVRNLSGG------------- 272 (500)
T ss_pred -----------------------------------------c-ccc------CCCCcEEEEecCCCC-------------
Confidence 0 000 000112344443211
Q ss_pred cCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh----hhhcceeeEeecCC---
Q 000913 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQND--- 950 (1226)
Q Consensus 878 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~--- 950 (1226)
..++||||++++||++||.|-=|||+|-|+++|.|... ...|+|.++|.+... ...+..++|||.|.
T Consensus 273 ----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~ 346 (500)
T COG1129 273 ----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSE 346 (500)
T ss_pred ----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccC
Confidence 14889999999999999999999999999999999654 458999999987643 34556799999984
Q ss_pred CCCCCCCHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHcCCCccc-ccccCCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000913 951 IHSPFVTIYESLLFSAWLRLSP--EVDSETRKMFIDEVMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPS 1027 (1226)
Q Consensus 951 ~~~~~lTv~E~l~f~~~lr~~~--~~~~~~~~~~v~~~l~~l~l~~~~-~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~ 1027 (1226)
-++..++|.+|+.++...+... -++....++.+++..+.+++.... +.. +..||||++|||.|||.|..+|+
T Consensus 347 Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-----v~~LSGGNQQKVvlarwL~~~p~ 421 (500)
T COG1129 347 GLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP-----IGTLSGGNQQKVVLARWLATDPK 421 (500)
T ss_pred cCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccch-----hhcCCchhhhhHHHHHHHhcCCC
Confidence 4678899999999873323221 245556667788999999886432 122 46799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 000913 1028 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1226)
Q Consensus 1028 il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y 1089 (1226)
||||||||.|+|..+...|.+++++++++|++||++|-+.. |+..+||||++|++ |+++-
T Consensus 422 vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~-Gri~~ 481 (500)
T COG1129 422 VLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMRE-GRIVG 481 (500)
T ss_pred EEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999875 79999999999996 67765
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-55 Score=549.60 Aligned_cols=362 Identities=28% Similarity=0.478 Sum_probs=287.9
Q ss_pred CCceeEEeceeeEEeccchhh--------------hcc--cccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhc
Q 000913 852 EPHSLTFDEVVYSVDMPEEMK--------------VQG--VLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 915 (1226)
Q Consensus 852 ~~~~l~~~~v~~~~~~~~~~~--------------~~~--~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~ 915 (1226)
.+..+.|.++.|.++...... ..+ ...+++.+|+|||+++++||++||+|||||||||||++|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 367899999999987543100 001 1234578999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcc
Q 000913 916 GRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 995 (1226)
Q Consensus 916 g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~ 995 (1226)
|+..++..+|+|.+||.+.... .++.+|||+|++.+++.+||+|++.|++.++.+...+.++++++++++++.+||.++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 9876444689999999886543 345689999999999999999999999877765555666677889999999999999
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhc
Q 000913 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1075 (1226)
Q Consensus 996 ~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~ 1075 (1226)
+|+.+|....++|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.|
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999877778999999999999999999999999999999999999999999999998889999999999997799999
Q ss_pred CeEEEEecCcEEEEeCCCCcchhhHHHHHHhCCCccCCCCCCCccceeeeecchhhhhh-----h----cCCHHHHhhcc
Q 000913 1076 DELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELA-----L----GIDFTEHYKRS 1146 (1226)
Q Consensus 1076 D~v~ll~~Gg~~~y~G~~~~~~~~~~~~f~~~~~~~~~~~~~npa~~~l~~~~~~~~~~-----~----~~~~~~~~~~s 1146 (1226)
|++++|++ |+++|.|+. +++++||++++ . +||+++|||||++|+++...... . .....+.|+..
T Consensus 275 D~iilL~~-G~iv~~G~~----~~~~~~f~~~G-~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (659)
T PLN03211 275 DSVLVLSE-GRCLFFGKG----SDAMAYFESVG-F-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL 347 (659)
T ss_pred ceEEEecC-CcEEEECCH----HHHHHHHHHCC-C-CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhh
Confidence 99999985 799999986 58999999984 4 69999999999999987532100 0 01123344321
Q ss_pred HHHHHHHHHHhhh--CC-CCC-----CCCCCC-CCCccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Q 000913 1147 DLYRRNKALIEDL--SR-PPP-----GSKDLY-FPTQFSQSSWIQFVACLWKQHWSYWRNPPYTAVRFFFTAFIALLFGS 1217 (1226)
Q Consensus 1147 ~~~~~~~~~~~~~--~~-~~~-----~~~~~~-~~~~~~~~~~~q~~~l~~r~~~~~~R~~~~~~~r~~~~~~~~l~~g~ 1217 (1226)
. .+.....++.. .. +.+ ..+... ....+.++||+|+.+|++|++++ ||++.+..+|+++++++|+++|+
T Consensus 348 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~ 425 (659)
T PLN03211 348 L-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGL 425 (659)
T ss_pred c-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHH
Confidence 1 11111111110 00 000 000000 11235678999999999999998 99999999999999999999999
Q ss_pred HhcCCC
Q 000913 1218 LFWDLG 1223 (1226)
Q Consensus 1218 ~~~~~g 1223 (1226)
+||+++
T Consensus 426 lf~~~~ 431 (659)
T PLN03211 426 MWWHSD 431 (659)
T ss_pred HHhcCC
Confidence 999985
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-56 Score=552.31 Aligned_cols=340 Identities=34% Similarity=0.558 Sum_probs=290.3
Q ss_pred CceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCc-eEEEEEEEcCccCChhhhcceeeEeecCCCCCCCCC
Q 000913 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 957 (1226)
Q Consensus 879 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lT 957 (1226)
+++.+|+|||++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.....+++.+|||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3567999999999999999999999999999999999987643 357999999998876667888999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCC-CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000913 958 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1036 (1226)
Q Consensus 958 v~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~-~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTs 1036 (1226)
|+|||.|++.++.+...+.++++++++++++.++|.+++|+.+|.++ .++|||||||||+||+||+++|++|||||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999998887767777888899999999999999999999754 57899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCCcchhhHHHHHHhCCCccCCCCC
Q 000913 1037 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFEAIPGVQKIKDG 1116 (1226)
Q Consensus 1037 gLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~~~~~~~~~~~f~~~~~~~~~~~~ 1116 (1226)
|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+++|+|+. +++.+||++++ . +||++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~-G~~v~~G~~----~~~~~~f~~~g-~-~~p~~ 268 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAE-GRVAYLGSP----DQAVPFFSDLG-H-PCPEN 268 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeC-CeEEEECCH----HHHHHHHHHcC-C-CCCCC
Confidence 99999999999999999988999999999999889999999999985 799999996 57899999984 4 69999
Q ss_pred CCccceeeeecchhhhhh-----hcCCHHHHhhccHHHHHHHHHHhhhCCCCCC---CCCCCCCCccCCCHHHHHHHHHH
Q 000913 1117 YNPATWMLEVSAASQELA-----LGIDFTEHYKRSDLYRRNKALIEDLSRPPPG---SKDLYFPTQFSQSSWIQFVACLW 1188 (1226)
Q Consensus 1117 ~npa~~~l~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~q~~~l~~ 1188 (1226)
+|||||++|+++...+.. ...++.+.|+.|+.+++..+.+.....+.+. ........+|..+|+.|+..|++
T Consensus 269 ~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 348 (617)
T TIGR00955 269 YNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLK 348 (617)
T ss_pred CChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHH
Confidence 999999999987543211 1124566777777665544333221111111 11111234678999999999999
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 000913 1189 KQHWSYWRNPPYTAVRFFFTAFIALLFGSLFWDLGGR 1225 (1226)
Q Consensus 1189 r~~~~~~R~~~~~~~r~~~~~~~~l~~g~~~~~~g~~ 1225 (1226)
|+++.+||||.+..+|+++++++|+++|++||+++++
T Consensus 349 R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~ 385 (617)
T TIGR00955 349 RSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLT 385 (617)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 9999999999999999999999999999999999865
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-54 Score=536.19 Aligned_cols=200 Identities=18% Similarity=0.268 Sum_probs=158.4
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++ +++.+|+|+||+|++|++++|+|||||||||||++|+|... +.+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc--
Confidence 488999998873 12358999999999999999999999999999999999876 46799988652
Q ss_pred ChhhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHH
Q 000913 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSGLSTEQR 1013 (1226)
Q Consensus 935 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~LSgGqr 1013 (1226)
..+||++|+.. ..+++.++..+......+ ... ++.+.++++.+++.+ ..+.. +..||||||
T Consensus 572 ------~~igyv~Q~~~--~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHHV--DGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQK 633 (718)
T ss_pred ------eeEEEEecccc--ccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHH
Confidence 35899999752 345666654332111111 111 245788999999974 44554 457999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE-EeCC
Q 000913 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI-YVGP 1092 (1226)
Q Consensus 1014 qrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~-y~G~ 1092 (1226)
|||+||++|+.+|++|+|||||+|||+.+...+++.|++. . .|||++||++. .+...||++++|.+ |+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~-gtvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--Q-GGVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCC
Confidence 9999999999999999999999999999999999888765 3 49999999987 47788999999986 6776 7775
Q ss_pred C
Q 000913 1093 L 1093 (1226)
Q Consensus 1093 ~ 1093 (1226)
.
T Consensus 709 ~ 709 (718)
T PLN03073 709 F 709 (718)
T ss_pred H
Confidence 3
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-53 Score=505.21 Aligned_cols=217 Identities=27% Similarity=0.324 Sum_probs=170.2
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCCCHH
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1226)
+++|+|+|+.+.+|+.++|+|+|||||||||++|+|.+.|+ +|+|...+. -.++|++|+....+..||.
T Consensus 16 ~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~~--------~~v~~l~Q~~~~~~~~tv~ 84 (530)
T COG0488 16 RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKG--------LRVGYLSQEPPLDPEKTVL 84 (530)
T ss_pred ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecCC--------ceEEEeCCCCCcCCCccHH
Confidence 45999999999999999999999999999999999999998 999987642 3699999999999999999
Q ss_pred HHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCCh---HHHHH-HHhhhhhhhHHHHHHHHHHcCCcccccccccccc
Q 000913 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI---DVYMK-AIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1226)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~-~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1226)
+.+.-+.. ...+...+...... ..++++. +.+.. ....++.+.+..++.+|.-||++.. ++.++
T Consensus 85 ~~v~~~~~-----~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~--- 152 (530)
T COG0488 85 DYVIEGFG-----ELRELLAELEEAYA---LLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVS--- 152 (530)
T ss_pred HHHHhhhH-----HHHHHHHHHHHHHH---hcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchh---
Confidence 99976542 12222222222111 1112111 11111 1223446667788999999999876 66655
Q ss_pred cCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcC
Q 000913 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1226)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1226)
.||||||.||+||++|+.+|++|+||||||+||..+..++.+.|++ ..+ ++|.++|++..+-+.|++|+-++.
T Consensus 153 --~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~----~~g-tviiVSHDR~FLd~V~t~I~~ld~ 225 (530)
T COG0488 153 --SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR----YPG-TVIVVSHDRYFLDNVATHILELDR 225 (530)
T ss_pred --hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCC-cEEEEeCCHHHHHHHhhheEEecC
Confidence 5999999999999999999999999999999999999999999985 234 566689999999999999999999
Q ss_pred CeE-EEecChhH
Q 000913 401 GQI-VYQGPREL 411 (1226)
Q Consensus 401 G~i-v~~G~~~~ 411 (1226)
|++ .|.|..+.
T Consensus 226 g~l~~y~Gny~~ 237 (530)
T COG0488 226 GKLTPYKGNYSS 237 (530)
T ss_pred CceeEecCCHHH
Confidence 987 46666553
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-51 Score=462.00 Aligned_cols=457 Identities=22% Similarity=0.312 Sum_probs=355.7
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCcc----ceEEEecCCCCCCC
Q 000913 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHIG 239 (1226)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~~ 239 (1226)
...+++|||+.+++||+.||+|.||||||||+++|.|.+.|+ +|+|.++|+++.-..|+ .-||.|.||..+++
T Consensus 16 ~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~ 92 (501)
T COG3845 16 GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVP 92 (501)
T ss_pred CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcEEeecccccc
Confidence 456999999999999999999999999999999999999999 99999999998655553 46899999999999
Q ss_pred CCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 000913 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1226)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1226)
++||.|||..+..-... .+. ...+...+++.+.+.+||+-..|..|++
T Consensus 93 ~lTV~ENiiLg~e~~~~-~~~------------------------------~~~~~~~~i~~l~~~yGl~vdp~~~V~d- 140 (501)
T COG3845 93 TLTVAENIILGLEPSKG-GLI------------------------------DRRQARARIKELSERYGLPVDPDAKVAD- 140 (501)
T ss_pred ccchhhhhhhcCccccc-ccc------------------------------CHHHHHHHHHHHHHHhCCCCCccceeec-
Confidence 99999999987642100 000 0112234567888999999988988876
Q ss_pred ccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEc
Q 000913 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1226)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1226)
||=||||||.|-++|+.+|++|||||||+-|-|....++++.|++++. . +.+||.|+|-..|+.+.+|++.||.
T Consensus 141 ----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~-G~tIi~ITHKL~Ev~~iaDrvTVLR 214 (501)
T COG3845 141 ----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-E-GKTIIFITHKLKEVMAIADRVTVLR 214 (501)
T ss_pred ----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeccHHHHHHhhCeeEEEe
Confidence 999999999999999999999999999999999999999999999875 4 4555668999999999999999999
Q ss_pred CCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHHhcCchhhhhhhhhcCCCCccCCHHHHHHHHHhchhhhhhHHhhc
Q 000913 400 DGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELR 479 (1226)
Q Consensus 400 ~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~s~~~~~~~~~l~ 479 (1226)
.|+++-.-++ . . + .+.+++++.
T Consensus 215 ~Gkvvgt~~~--~--------------~------------------------~---~t~~ela~l--------------- 236 (501)
T COG3845 215 RGKVVGTVDP--V--------------A------------------------E---TTEEELAEL--------------- 236 (501)
T ss_pred CCeEEeeecC--C--------------C------------------------C---CCHHHHHHH---------------
Confidence 9998643210 0 0 0 000000000
Q ss_pred CCccccchhhccccccccCCcHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcccCCCcccccccchhh
Q 000913 480 TPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAG 559 (1226)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~r~~~~~~~ali~gtlf~~~~~~~~~~~~~~~~~g 559 (1226)
T Consensus 237 -------------------------------------------------------------------------------- 236 (501)
T COG3845 237 -------------------------------------------------------------------------------- 236 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhchhhHHhhcccccChhhHHHHHHHHHhcHHHHHHHHHHHHhhhcccCcCchhHHHHH
Q 000913 560 ATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQ 639 (1226)
Q Consensus 560 ~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~ 639 (1226)
|+|
T Consensus 237 ------------------------------------------------------------------MvG----------- 239 (501)
T COG3845 237 ------------------------------------------------------------------MVG----------- 239 (501)
T ss_pred ------------------------------------------------------------------hcC-----------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHHHhHcHHHHHHHHHHHHhhcCC
Q 000913 640 YALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGH 719 (1226)
Q Consensus 640 ~l~~~~~~~~~~~l~~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~ 719 (1226)
T Consensus 240 -------------------------------------------------------------------------------- 239 (501)
T COG3845 240 -------------------------------------------------------------------------------- 239 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCccchhhhhhhccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeeccccccccccccCC
Q 000913 720 SWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGG 799 (1226)
Q Consensus 720 ~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~l~~~~~~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1226)
.++.. +
T Consensus 240 --------------~~v~~-------------------------------------~----------------------- 245 (501)
T COG3845 240 --------------REVVL-------------------------------------R----------------------- 245 (501)
T ss_pred --------------Ccccc-------------------------------------c-----------------------
Confidence 00000 0
Q ss_pred cccccccCCCCCCCCCCCCCCcccccccccchhhhhhhhcCCCcCCCCccCCCCceeEEeceeeEEeccchhhhcccccC
Q 000913 800 NVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLED 879 (1226)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~ 879 (1226)
. + ..... |- +..++++|++..-+.
T Consensus 246 ----------------~--~--------------------~~~~~-----pg-~~vL~V~~L~v~~~~------------ 269 (501)
T COG3845 246 ----------------V--V--------------------KPPST-----PG-EVVLEVEDLSVKDRR------------ 269 (501)
T ss_pred ----------------c--c--------------------cCCCC-----CC-CeEEEEeeeEeecCC------------
Confidence 0 0 00000 00 124667777654321
Q ss_pred ceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC----Chh-hhcceeeEeecCCC---
Q 000913 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK----KQE-TFARISGYCEQNDI--- 951 (1226)
Q Consensus 880 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~----~~~-~~~~~~gyv~Q~~~--- 951 (1226)
....+++|||++++||++||.|..|-|-+.|+.+|+|..+ +..|+|.++|.+. +.. ..+..++|||.|..
T Consensus 270 ~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~--~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~G 347 (501)
T COG3845 270 GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK--PASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHG 347 (501)
T ss_pred CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc--cCCceEEECCEeccccCCHHHHHhcCCccCChhhccCc
Confidence 1357999999999999999999999999999999999865 3459999999986 222 23456899999864
Q ss_pred CCCCCCHHHHHHHHHHhhc----CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000913 952 HSPFVTIYESLLFSAWLRL----SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 1027 (1226)
Q Consensus 952 ~~~~lTv~E~l~f~~~lr~----~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~ 1027 (1226)
+.+.+|+.||+.+...-+. ..-.+..+.+++..++++.++.....-.. ..+.||||++||+-+||||..+|+
T Consensus 348 lv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~----~a~~LSGGNqQK~IlaREl~~~p~ 423 (501)
T COG3845 348 LVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDA----PARSLSGGNQQKLILARELARRPD 423 (501)
T ss_pred cccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCc----chhhcCCcceehhhhhhhhccCCC
Confidence 4678999999988654221 11355677788899999999886322111 146899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 000913 1028 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1094 (1226)
Q Consensus 1028 il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~~ 1094 (1226)
+|++.+||-|||..+.+.|.+.|.+.++.|+.|++++-+.+ ++++++||+.+|.+ |+++...+..
T Consensus 424 lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~-Gri~~~~~~~ 488 (501)
T COG3845 424 LLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYE-GRIVGIVPPE 488 (501)
T ss_pred EEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeC-Cceecccccc
Confidence 99999999999999999999999999999999999999998 79999999999996 7888777654
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-45 Score=372.81 Aligned_cols=214 Identities=25% Similarity=0.368 Sum_probs=191.0
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|++.++ ++..+|+|||++|++||+++|+|||||||||||+||.++.. +.+|+|.++|.+..
T Consensus 3 i~i~~l~K~f-------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSF-------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEe-------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEecc
Confidence 6678887776 45689999999999999999999999999999999999877 56899999996542
Q ss_pred ----hhhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 000913 936 ----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1226)
Q Consensus 936 ----~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgG 1011 (1226)
-...|+.+|+|+|+..+||.+||.||+.++...- ...++++.++...+.|+.+||.+.+|.+ +..||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~y-----P~qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAY-----PAQLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhC-----ccccCcH
Confidence 2357788999999999999999999999875332 2356778888899999999999999988 4579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 000913 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1226)
Q Consensus 1012 qrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G 1091 (1226)
|||||+|||||+.+|+++++|||||.|||+....|.+.+++++++|.|.||+||+..+ .-+.+||+++|++ |+++..|
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd~-G~iie~g 218 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMDQ-GKIIEEG 218 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEeeC-CEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999875 7788999999985 7999998
Q ss_pred CC
Q 000913 1092 PL 1093 (1226)
Q Consensus 1092 ~~ 1093 (1226)
++
T Consensus 219 ~p 220 (240)
T COG1126 219 PP 220 (240)
T ss_pred CH
Confidence 65
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-44 Score=368.32 Aligned_cols=220 Identities=25% Similarity=0.409 Sum_probs=187.2
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCC----CccceEEEecCCCCCCC
Q 000913 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF----VPQRTAAYISQHDNHIG 239 (1226)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~----~~~~~~~yv~Q~d~~~~ 239 (1226)
..++|+|||+.|++||+++|+|||||||||||++|.|+..++ +|+|.++|.++... ..|+.+|+|+|+.++||
T Consensus 14 ~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFP 90 (240)
T COG1126 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFP 90 (240)
T ss_pred CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccc
Confidence 456999999999999999999999999999999999999998 99999999765321 23578999999999999
Q ss_pred CCCHHHHHHHHhHh-cCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 000913 240 EMTVRETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1226)
Q Consensus 240 ~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1226)
++||.||+..+... ++ ....+++..+..+|+.+||.+.+|.+
T Consensus 91 HlTvleNv~lap~~v~~----------------------------------~~k~eA~~~A~~lL~~VGL~~ka~~y--- 133 (240)
T COG1126 91 HLTVLENVTLAPVKVKK----------------------------------LSKAEAREKALELLEKVGLADKADAY--- 133 (240)
T ss_pred cchHHHHHHhhhHHHcC----------------------------------CCHHHHHHHHHHHHHHcCchhhhhhC---
Confidence 99999999987421 11 11223445667889999999988854
Q ss_pred cccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEE
Q 000913 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1226)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1226)
+.+|||||||||+|||||+-+|+++++|||||+|||....++.+.+++++. .+ .+.+.++|....+-+.+|||+.|
T Consensus 134 --P~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-eG-mTMivVTHEM~FAr~VadrviFm 209 (240)
T COG1126 134 --PAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EG-MTMIIVTHEMGFAREVADRVIFM 209 (240)
T ss_pred --ccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-cC-CeEEEEechhHHHHHhhheEEEe
Confidence 567999999999999999999999999999999999999999999999986 44 44555789999999999999999
Q ss_pred cCCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHH
Q 000913 399 SDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQE 435 (1226)
Q Consensus 399 ~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~ 435 (1226)
++|+++..|+++++ |..|.+....+|+..
T Consensus 210 d~G~iie~g~p~~~--------f~~p~~~R~~~FL~~ 238 (240)
T COG1126 210 DQGKIIEEGPPEEF--------FDNPKSERTRQFLSK 238 (240)
T ss_pred eCCEEEEecCHHHH--------hcCCCCHHHHHHHHh
Confidence 99999999999876 455666666677654
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-43 Score=398.68 Aligned_cols=202 Identities=19% Similarity=0.231 Sum_probs=156.8
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000913 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1226)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1226)
..+.++|+++.++.. ..++++++|-+.+++.+|+|||||+||||||+++.|... +..|.|.-.-+.
T Consensus 388 pvi~~~nv~F~y~~~------------~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~H~ 453 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDN------------PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHSHN 453 (614)
T ss_pred CeEEEeccccCCCCc------------chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--cccccccccccc
Confidence 358899999887632 258999999999999999999999999999999999876 456777543222
Q ss_pred CChhhhcceeeEeecCC--CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 000913 934 KKQETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1226)
Q Consensus 934 ~~~~~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgG 1011 (1226)
.+++..|+- .+.-..++.|+++=. . ..+.+.+.+..++..+||+.-.+.. ..+.||+|
T Consensus 454 --------~~~~y~Qh~~e~ldl~~s~le~~~~~-----~---~~~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~G 513 (614)
T KOG0927|consen 454 --------KLPRYNQHLAEQLDLDKSSLEFMMPK-----F---PDEKELEEMRSILGRFGLTGDAQVV----PMSQLSDG 513 (614)
T ss_pred --------cchhhhhhhHhhcCcchhHHHHHHHh-----c---cccchHHHHHHHHHHhCCCcccccc----chhhcccc
Confidence 223344432 233345666665421 1 1123455678899999998544332 14689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 000913 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1226)
Q Consensus 1012 qrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G 1091 (1226)
||+||..|+.++..|.||+|||||+|||..+...+-++|.+. ..+||+++||... |-..++++.+..+++...+.|
T Consensus 514 qr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfrl-I~qVaeEi~~c~~~~~~~~~G 589 (614)
T KOG0927|consen 514 QRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFRL-ISQVAEEIWVCENGTVTKWDG 589 (614)
T ss_pred cchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhhH-HHHHHHHhHhhccCceeecCc
Confidence 999999999999999999999999999999999999998765 4689999999875 788999999999999999998
Q ss_pred CC
Q 000913 1092 PL 1093 (1226)
Q Consensus 1092 ~~ 1093 (1226)
..
T Consensus 590 ~i 591 (614)
T KOG0927|consen 590 DI 591 (614)
T ss_pred cH
Confidence 73
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=393.30 Aligned_cols=214 Identities=30% Similarity=0.442 Sum_probs=190.1
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|++..+. .++.+|+||||+|++|+++||+|||||||||||++|+|... +.+|+|.++|.+..
T Consensus 5 i~~~~l~k~~~------------~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~~ 70 (293)
T COG1131 5 IEVRNLTKKYG------------GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVV 70 (293)
T ss_pred eeecceEEEeC------------CCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeCc
Confidence 56677776653 13689999999999999999999999999999999999887 46899999998765
Q ss_pred h--hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 000913 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1226)
Q Consensus 936 ~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqr 1013 (1226)
. ...++.+||++|++.+++.+||+|+|.|.+.++.... +..+++++++++.++|.+..++. +++||+|||
T Consensus 71 ~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~k 142 (293)
T COG1131 71 KEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKK-----VRTLSGGMK 142 (293)
T ss_pred cCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHHH
Confidence 4 4567889999999999999999999999999987542 44567899999999999855554 467999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCC
Q 000913 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1226)
Q Consensus 1014 qrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g-~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~ 1092 (1226)
|||+||+||+++|+||||||||+||||.++..+++.|++++++| +||++|||+++ ++...||++++|++ |++++.|+
T Consensus 143 qrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g~ 220 (293)
T COG1131 143 QRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEGT 220 (293)
T ss_pred HHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeCC
Confidence 99999999999999999999999999999999999999999887 89999999997 68888999999986 79999997
Q ss_pred C
Q 000913 1093 L 1093 (1226)
Q Consensus 1093 ~ 1093 (1226)
.
T Consensus 221 ~ 221 (293)
T COG1131 221 P 221 (293)
T ss_pred H
Confidence 5
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=372.64 Aligned_cols=224 Identities=29% Similarity=0.381 Sum_probs=194.0
Q ss_pred ccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc------cceEEEecCCCC
Q 000913 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDN 236 (1226)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~ 236 (1226)
...++|+|||+.|++|++.+|+|+||||||||++++.++-.|+ +|+|.++|.++..+.. |+.||+++|+..
T Consensus 17 ~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn 93 (339)
T COG1135 17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN 93 (339)
T ss_pred CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEecccc
Confidence 3467999999999999999999999999999999999999999 9999999988876543 478999999999
Q ss_pred CCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccc
Q 000913 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (1226)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1226)
++...||.||++|+.+..+.. ..+.+.++.++|+.+||++.+|.+
T Consensus 94 LLssrTV~~NvA~PLeiag~~----------------------------------k~ei~~RV~elLelVgL~dk~~~y- 138 (339)
T COG1135 94 LLSSRTVFENVAFPLELAGVP----------------------------------KAEIKQRVAELLELVGLSDKADRY- 138 (339)
T ss_pred ccccchHHhhhhhhHhhcCCC----------------------------------HHHHHHHHHHHHHHcCChhhhccC-
Confidence 999999999999998876532 112345788899999999888754
Q ss_pred cccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEE
Q 000913 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1226)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1226)
+.+|||||||||+|||||+.+|+||++|||||+|||.|+..|.+.|+++-++. +.+|+.++|-+.-+-+.||+|.
T Consensus 139 ----P~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~l-glTIvlITHEm~Vvk~ic~rVa 213 (339)
T COG1135 139 ----PAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINREL-GLTIVLITHEMEVVKRICDRVA 213 (339)
T ss_pred ----chhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHc-CCEEEEEechHHHHHHHhhhhe
Confidence 56799999999999999999999999999999999999999999999987755 4555558888999999999999
Q ss_pred EEcCCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHHhc
Q 000913 397 LLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVT 437 (1226)
Q Consensus 397 lL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~ 437 (1226)
+|++|+++++|+..++ |.-|.+.-.-.|+.+..
T Consensus 214 vm~~G~lvE~G~v~~v--------F~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 214 VLDQGRLVEEGTVSEV--------FANPKHAITQEFIGETL 246 (339)
T ss_pred EeeCCEEEEeccHHHh--------hcCcchHHHHHHHHhhc
Confidence 9999999999999887 44566655566665544
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=359.93 Aligned_cols=230 Identities=27% Similarity=0.385 Sum_probs=199.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.+++++|+.++ +.+.+++|||++|++||+++||||||+||||||++|.|... +.+|+|.++|.++
T Consensus 8 ~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~i 72 (263)
T COG1127 8 LIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGEDI 72 (263)
T ss_pred eEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcch
Confidence 57888888765 46789999999999999999999999999999999999887 5689999999886
Q ss_pred Ch------hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCC
Q 000913 935 KQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSG 1007 (1226)
Q Consensus 935 ~~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~g~~~~~~ 1007 (1226)
.+ ...++.+|+++|+-.+|..+||+||+.|. +|.....+++..++.+..-|+.+||.+. .+.. +++
T Consensus 73 ~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafp--lre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----PsE 145 (263)
T COG1127 73 PQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFP--LREHTKLPESLIRELVLMKLELVGLRGAAADLY-----PSE 145 (263)
T ss_pred hccCHHHHHHHHhheeEEeeccccccccchhHhhhee--hHhhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----chh
Confidence 43 23567899999999999999999999995 4444567778888889999999999987 6655 568
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 000913 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1226)
Q Consensus 1008 LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~ 1086 (1226)
||||++||++|||||+.+|+|||+||||+||||.++..+-++|+++.+. |.|+|++|||.. +++..+|++++|.+ |+
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-gk 223 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-GK 223 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-CE
Confidence 9999999999999999999999999999999999999999999999866 999999999997 59999999999996 79
Q ss_pred EEEeCCCCc----chhhHHHHHHhCC
Q 000913 1087 EIYVGPLGR----HSCHLISYFEAIP 1108 (1226)
Q Consensus 1087 ~~y~G~~~~----~~~~~~~~f~~~~ 1108 (1226)
+++.|+..+ ...-+.+||....
T Consensus 224 v~~~Gt~~el~~sd~P~v~qf~~G~~ 249 (263)
T COG1127 224 VIAEGTPEELLASDDPWVRQFFNGIR 249 (263)
T ss_pred EEEeCCHHHHHhCCCHHHHHHhcCCC
Confidence 999999632 1123456776553
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=374.19 Aligned_cols=218 Identities=23% Similarity=0.332 Sum_probs=192.5
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
+++++|+..+... ..+...+|+|||++|++||++||+|.||||||||++++.++.. +.+|.|.++|.++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecc
Confidence 5678887665421 1124579999999999999999999999999999999999877 57899999997653
Q ss_pred h------hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 000913 936 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1226)
Q Consensus 936 ~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LS 1009 (1226)
. ..+++.+|+++|+..++...||+||+.|...+.. .++++++++|.++++.+||.+.++.+ +.+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~y-----P~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRY-----PAQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccC-----chhcC
Confidence 2 2467889999999999999999999999877664 56889999999999999999999888 46799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 000913 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1226)
Q Consensus 1010 gGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~ 1088 (1226)
|||||||+|||||+.+|+||++|||||.|||++...|+++|+++.++ |.||+++||+++. +-+.|||+.+|++ |+++
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~V-vk~ic~rVavm~~-G~lv 221 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEV-VKRICDRVAVLDQ-GRLV 221 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHhhhheEeeC-CEEE
Confidence 99999999999999999999999999999999999999999999754 9999999999874 7789999999986 7999
Q ss_pred EeCCC
Q 000913 1089 YVGPL 1093 (1226)
Q Consensus 1089 y~G~~ 1093 (1226)
..|+.
T Consensus 222 E~G~v 226 (339)
T COG1135 222 EEGTV 226 (339)
T ss_pred EeccH
Confidence 99985
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=361.74 Aligned_cols=210 Identities=27% Similarity=0.403 Sum_probs=185.6
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCC
Q 000913 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGE 240 (1226)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~ 240 (1226)
.+.+++|+|++|++||+++++|||||||||+||+|.++++|+ +|+|.+||.++.+... |+.+|||-|.-.+||+
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh 89 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPH 89 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCC
Confidence 355999999999999999999999999999999999999999 9999999999877654 6899999999999999
Q ss_pred CCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccc
Q 000913 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1226)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1226)
+||.||+.+-..+++... ++.+.+++++|+.+||+.. ...+++
T Consensus 90 ~Tv~eNIa~VP~L~~w~k----------------------------------~~i~~r~~ELl~lvgL~p~---~~~~Ry 132 (309)
T COG1125 90 LTVAENIATVPKLLGWDK----------------------------------ERIKKRADELLDLVGLDPS---EYADRY 132 (309)
T ss_pred ccHHHHHHhhhhhcCCCH----------------------------------HHHHHHHHHHHHHhCCCHH---HHhhcC
Confidence 999999999877765421 1234568899999999752 123577
Q ss_pred cCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcC
Q 000913 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1226)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1226)
+.+|||||+|||.+||||+.+|+|++||||+++|||-++.++.+.++++-+..+ ++||.++|+..|++.++|+|++|++
T Consensus 133 P~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~-kTivfVTHDidEA~kLadri~vm~~ 211 (309)
T COG1125 133 PHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELG-KTIVFVTHDIDEALKLADRIAVMDA 211 (309)
T ss_pred chhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhC-CEEEEEecCHHHHHhhhceEEEecC
Confidence 889999999999999999999999999999999999999999999988766544 5556689999999999999999999
Q ss_pred CeEEEecChhHHHH
Q 000913 401 GQIVYQGPRELVLE 414 (1226)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (1226)
|+++.++++++++.
T Consensus 212 G~i~Q~~~P~~il~ 225 (309)
T COG1125 212 GEIVQYDTPDEILA 225 (309)
T ss_pred CeEEEeCCHHHHHh
Confidence 99999999999874
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=370.75 Aligned_cols=217 Identities=26% Similarity=0.416 Sum_probs=186.4
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.|+. + .+|+|||+++++|++++|+||||||||||+++|.|..+ +.+|+|.++|.+.
T Consensus 4 ~i~v~nl~v~y~~------------~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYGN------------R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEECC------------E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 4789999998852 2 59999999999999999999999999999999999776 5689999999886
Q ss_pred ChhhhcceeeEeecCCCC--CCCCCHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 000913 935 KQETFARISGYCEQNDIH--SPFVTIYESLLFSAWLRL--SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1226)
Q Consensus 935 ~~~~~~~~~gyv~Q~~~~--~~~lTv~E~l~f~~~lr~--~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSg 1010 (1226)
.+..-+..+|||||...+ ..-+||+|-+..+...+. -...+.+ .++.|+++|+.+|+.+++++.+| .|||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~-d~~~v~~aL~~Vgm~~~~~r~i~-----~LSG 142 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKK-DKEKVDEALERVGMEDLRDRQIG-----ELSG 142 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHH-HHHHHHHHHHHcCchhhhCCccc-----ccCc
Confidence 654435679999996533 223799999988743332 1222333 36789999999999999999876 5999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 000913 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1226)
Q Consensus 1011 Gqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~ 1090 (1226)
||+|||.|||||+++|++|+|||||+|+|+.++..++++|+++.++|+||++++||++ .+.++||++++|+ +++++.
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~ 219 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIAS 219 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEec
Confidence 9999999999999999999999999999999999999999999988999999999998 4899999999997 489999
Q ss_pred CCCCc
Q 000913 1091 GPLGR 1095 (1226)
Q Consensus 1091 G~~~~ 1095 (1226)
|++..
T Consensus 220 G~~~~ 224 (254)
T COG1121 220 GPPEE 224 (254)
T ss_pred cChhh
Confidence 99753
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=374.32 Aligned_cols=218 Identities=27% Similarity=0.407 Sum_probs=190.3
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++.+|+++.|+ ++.+|+|+||++++|++++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 2 ~L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCch
Confidence 367889998884 4679999999999999999999999999999999999876 5689999999886
Q ss_pred Ch---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 000913 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1226)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSg 1010 (1226)
.. +.+++.++||||.......+||+|.+.++..-+... ....++.++.|+++|+.+++.+++++.+ ..|||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSG 141 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSG 141 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccCh
Confidence 43 567889999999998888999999999875432221 1123344457999999999999999885 56999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 000913 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1226)
Q Consensus 1011 Gqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y 1089 (1226)
|||||+.|||||+++|+||+||||||+||...+..|+++++++. ++|+|||++.||++. ...+||++++|++ |+++.
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~-G~i~a 219 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKD-GKIVA 219 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC-CeEEe
Confidence 99999999999999999999999999999999999999999998 459999999999985 8899999999986 79999
Q ss_pred eCCCC
Q 000913 1090 VGPLG 1094 (1226)
Q Consensus 1090 ~G~~~ 1094 (1226)
.|++.
T Consensus 220 ~G~p~ 224 (258)
T COG1120 220 QGTPE 224 (258)
T ss_pred ecCcc
Confidence 99864
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=412.25 Aligned_cols=255 Identities=22% Similarity=0.381 Sum_probs=211.9
Q ss_pred hHhhHHHHHHhhhccccChHHHHHHHHHHhhhcCCCC---CcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhH
Q 000913 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDL---PKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNY 154 (1226)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 154 (1226)
+.++.-..+|+++.+|..|. +. .-|... .+..|+|+||+|.|+.
T Consensus 431 lmkgvGAs~rvFel~dr~P~-----i~----~~G~~~p~~~~G~IeF~~VsFaYP~------------------------ 477 (716)
T KOG0058|consen 431 LMKGVGASERVFELMDRKPR-----IP----LTGTLAPDHLQGVIEFEDVSFAYPT------------------------ 477 (716)
T ss_pred HHHhcchHHHHHHHhccCCC-----CC----CCCccccccccceEEEEEeeeecCC------------------------
Confidence 45666677899998888775 22 124433 4678999999999843
Q ss_pred hhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEe
Q 000913 155 LRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYI 231 (1226)
Q Consensus 155 ~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv 231 (1226)
+ +..+||+|+||+|+|||.|||+|||||||||+.++|..+++|+ +|+|++||+|+.++++ ++.||+|
T Consensus 478 ------R-p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V 547 (716)
T KOG0058|consen 478 ------R-PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLV 547 (716)
T ss_pred ------C-CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeee
Confidence 2 3466999999999999999999999999999999999999999 9999999999998876 4889999
Q ss_pred cCCCCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccc
Q 000913 232 SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311 (1226)
Q Consensus 232 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1226)
.|+|.+|. .||+|||.|+.. ....|.+.++++....+++ +.++++.
T Consensus 548 ~QEPvLFs-~sI~eNI~YG~~----~~t~e~i~~AAk~ANah~F-----------------------------I~~~p~g 593 (716)
T KOG0058|consen 548 GQEPVLFS-GSIRENIAYGLD----NATDEEIEAAAKMANAHEF-----------------------------ITNFPDG 593 (716)
T ss_pred eccceeec-ccHHHHHhcCCC----CCCHHHHHHHHHHhChHHH-----------------------------HHhCccc
Confidence 99998775 699999999874 2333444444444332211 5679999
Q ss_pred ccccccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhh
Q 000913 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (1226)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~ 391 (1226)
+||.||+++. .||||||||++|||||+++|+||||||.||+||+.+...+.+.|.+..+ ++|+++ |. |+.++.+.
T Consensus 594 Y~T~VGEkG~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlv-IA-HRLSTV~~ 668 (716)
T KOG0058|consen 594 YNTVVGEKGS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLV-IA-HRLSTVRH 668 (716)
T ss_pred cccccCCccc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEE-Ee-hhhhHhhh
Confidence 9999999887 5999999999999999999999999999999999999999999988654 355554 43 46789999
Q ss_pred cCcEEEEcCCeEEEecChhHHHH
Q 000913 392 FDDIILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 392 ~D~iilL~~G~iv~~G~~~~~~~ 414 (1226)
+|+|+++++|++++.|+++|+++
T Consensus 669 Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 669 ADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred ccEEEEEcCCeEEecccHHHHhh
Confidence 99999999999999999999875
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-42 Score=363.21 Aligned_cols=204 Identities=25% Similarity=0.371 Sum_probs=181.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.+.++++++.+. ...+|+|||++|.+||+++|+||||||||||||+|+|..+ +.+|+|.++|.+.
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc
Confidence 367788887764 3579999999999999999999999999999999999987 5689999999887
Q ss_pred ChhhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 000913 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1226)
Q Consensus 935 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrq 1014 (1226)
.. ....+|||+|++.++|.+||+||+.|+...+. .+.++++++++++++.+||.++.+++ +..|||||||
T Consensus 68 ~~--p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQ 137 (248)
T COG1116 68 TG--PGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQ 137 (248)
T ss_pred CC--CCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHH
Confidence 32 34568999999999999999999999876654 35566777899999999999999998 4679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 000913 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1226)
Q Consensus 1015 rl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~t~H~p~~~i~~~~D~v~ll~~G 1084 (1226)
||+|||||+.+|+||+||||++.||+.++..+++.|.++. ++++|||++|||.. |...++|||++|.++
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 9999999999999999999999999999999999999986 45899999999987 678889999999874
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-42 Score=383.91 Aligned_cols=216 Identities=31% Similarity=0.453 Sum_probs=193.3
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCcc-ceEEEecCCCCCCCCCCHHH
Q 000913 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-RTAAYISQHDNHIGEMTVRE 245 (1226)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~~-~~~~yv~Q~d~~~~~lTV~E 245 (1226)
+|+|+|+.|++||+++|+|||||||||||++|||+.+|+ +|+|.++|.++++..|+ |.+|+|+|+..++|+|||+|
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~ 94 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYE 94 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHH
Confidence 899999999999999999999999999999999999999 99999999999998775 89999999999999999999
Q ss_pred HHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 000913 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1226)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1226)
|+.|+.+.++... ++.+.+++++.+.|+|++..|.. +++||
T Consensus 95 Niaf~Lk~~~~~k----------------------------------~ei~~rV~eva~~L~l~~lL~r~-----P~~LS 135 (338)
T COG3839 95 NIAFGLKLRGVPK----------------------------------AEIDKRVKEVAKLLGLEHLLNRK-----PLQLS 135 (338)
T ss_pred HhhhhhhhCCCch----------------------------------HHHHHHHHHHHHHcCChhHHhcC-----cccCC
Confidence 9999998875311 12345678889999999988754 56799
Q ss_pred hhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEEE
Q 000913 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1226)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~ 405 (1226)
|||||||+|||||+.+|++++||||+|+||...+..+...|+++.+ .-++++|.++|+..|+..++|+|++|++|+|..
T Consensus 136 GGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~-~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 136 GGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHE-RLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred hhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHH-hcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeee
Confidence 9999999999999999999999999999999999999999998654 455666778999999999999999999999999
Q ss_pred ecChhHHHHHHHhcCCCCCCCCChHHHH
Q 000913 406 QGPRELVLEFFASMGFRCPKRKGVADFL 433 (1226)
Q Consensus 406 ~G~~~~~~~~F~~~Gf~cp~~~~~adfl 433 (1226)
.|++.++ |..|.+.-+|.|+
T Consensus 215 ~g~p~el--------y~~P~n~fVA~Fi 234 (338)
T COG3839 215 VGTPLEL--------YERPANLFVAGFI 234 (338)
T ss_pred cCChHHH--------hhCccchhhhhhc
Confidence 9999998 4567777777775
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=361.55 Aligned_cols=208 Identities=27% Similarity=0.417 Sum_probs=175.7
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh
Q 000913 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1226)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1226)
+.+||+..+.... ....+|++||++|++||++||||||||||||||++|.|... +.+|.|.++|.++..
T Consensus 3 ~~~~v~k~y~~~~---------~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~--pt~G~v~i~g~d~~~ 71 (226)
T COG1136 3 ELKNVSKIYGLGG---------EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK--PTSGEVLINGKDLTK 71 (226)
T ss_pred EEeeeEEEeccCC---------cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEEcCc
Confidence 4566765554321 22579999999999999999999999999999999999877 468999999976542
Q ss_pred ------hhh-cceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccc-cccCCCCCCCC
Q 000913 937 ------ETF-ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ-SLVGLPGVSGL 1008 (1226)
Q Consensus 937 ------~~~-~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~-~~~g~~~~~~L 1008 (1226)
..+ ++.+|||+|+..+.|.+||+||+.+...+.... ...+++.++++++.+||.+..+ .. +..|
T Consensus 72 l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~---~~~~~~~~~~l~~~lgl~~~~~~~~-----p~eL 143 (226)
T COG1136 72 LSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKS---AGRRKRAAEELLEVLGLEDRLLKKK-----PSEL 143 (226)
T ss_pred CCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCC---hhHHHHHHHHHHHhcCChhhhccCC-----chhc
Confidence 123 456999999999999999999999876554322 2256677899999999987666 54 4579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 000913 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1226)
Q Consensus 1009 SgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg 1085 (1226)
||||||||+|||||+.+|+|||.||||.+||++++..|++++++++++ |+|||++|||| ++...|||++.|++|+
T Consensus 144 SGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 144 SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219 (226)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCe
Confidence 999999999999999999999999999999999999999999999865 99999999998 4788999999999754
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=369.45 Aligned_cols=210 Identities=34% Similarity=0.463 Sum_probs=180.4
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCcc---ceEEEecCCCCCCCCC
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYISQHDNHIGEM 241 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~~---~~~~yv~Q~d~~~~~l 241 (1226)
++||+|+||.+++|++++|+||||||||||||+|+|.++|. +|+|.++|+++.++..+ +.+|||||.....+.+
T Consensus 15 ~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~ 91 (258)
T COG1120 15 KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGL 91 (258)
T ss_pred eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCc
Confidence 45999999999999999999999999999999999999998 99999999999877654 7899999998888999
Q ss_pred CHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 000913 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1226)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1226)
||+|-+.++..-.. + ... ...++....++..|+.+|+.+.++..+.
T Consensus 92 tV~d~V~~GR~p~~-~-----------------~~~------------~~~~~D~~~v~~aL~~~~~~~la~r~~~---- 137 (258)
T COG1120 92 TVYELVLLGRYPHL-G-----------------LFG------------RPSKEDEEIVEEALELLGLEHLADRPVD---- 137 (258)
T ss_pred EEeehHhhcCCccc-c-----------------ccc------------CCCHhHHHHHHHHHHHhCcHHHhcCccc----
Confidence 99999998853210 0 000 0011122357888999999999987654
Q ss_pred CCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCC
Q 000913 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1226)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1226)
.|||||||||.||+||+++|++|+||||||+||...+.++++.++++.+..+.| ||.+.|+...+.++||++++|++|
T Consensus 138 -~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~t-vv~vlHDlN~A~ryad~~i~lk~G 215 (258)
T COG1120 138 -ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLT-VVMVLHDLNLAARYADHLILLKDG 215 (258)
T ss_pred -ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCE-EEEEecCHHHHHHhCCEEEEEECC
Confidence 599999999999999999999999999999999999999999999998754545 555778999999999999999999
Q ss_pred eEEEecChhHHH
Q 000913 402 QIVYQGPRELVL 413 (1226)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1226)
+++.+|++++++
T Consensus 216 ~i~a~G~p~evl 227 (258)
T COG1120 216 KIVAQGTPEEVL 227 (258)
T ss_pred eEEeecCcchhc
Confidence 999999998775
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=383.43 Aligned_cols=223 Identities=30% Similarity=0.436 Sum_probs=197.0
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-cceEEEecCCCCCCCCCCH
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1226)
..+|+|+|++|++||+++|+|||||||||||++|||+..|+ +|+|.++|.++....+ +|.+++|+|+-.+||+|||
T Consensus 18 ~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV 94 (352)
T COG3842 18 FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTV 94 (352)
T ss_pred eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCcH
Confidence 45999999999999999999999999999999999999999 9999999999998877 4889999999999999999
Q ss_pred HHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 000913 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1226)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1226)
+||+.|+.+.++... ..+.+.+++++|+.++|++.++ +.+.+
T Consensus 95 ~~NVafGLk~~~~~~---------------------------------~~~i~~rv~e~L~lV~L~~~~~-----R~p~q 136 (352)
T COG3842 95 EENVAFGLKVRKKLK---------------------------------KAEIKARVEEALELVGLEGFAD-----RKPHQ 136 (352)
T ss_pred HHHhhhhhhhcCCCC---------------------------------HHHHHHHHHHHHHHcCchhhhh-----hChhh
Confidence 999999987443111 1123456888999999998766 45567
Q ss_pred CChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeE
Q 000913 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1226)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1226)
|||||+|||+|||||+.+|++|+||||.|+||..-+.++...|+++.+.. +.+.|.++|+..|++.++|+|++|++|+|
T Consensus 137 LSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~-giT~i~VTHDqeEAl~msDrI~Vm~~G~I 215 (352)
T COG3842 137 LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQREL-GITFVYVTHDQEEALAMSDRIAVMNDGRI 215 (352)
T ss_pred hChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHhhhccceEEccCCce
Confidence 99999999999999999999999999999999999999999999987765 55556689999999999999999999999
Q ss_pred EEecChhHHHHHHHhcCCCCCCCCChHHHHHHhc
Q 000913 404 VYQGPRELVLEFFASMGFRCPKRKGVADFLQEVT 437 (1226)
Q Consensus 404 v~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~ 437 (1226)
...|+++++ |..|...-+|+|+-+..
T Consensus 216 ~Q~gtP~ei--------Y~~P~~~fVA~FiG~~N 241 (352)
T COG3842 216 EQVGTPEEI--------YERPATRFVADFIGESN 241 (352)
T ss_pred eecCCHHHH--------hhCcchHHHHHHhCcce
Confidence 999999998 56788888889886543
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-42 Score=356.60 Aligned_cols=213 Identities=26% Similarity=0.365 Sum_probs=191.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++|+||+..+. ++.+++|+|++|++||+++++|||||||||+|++|.+... +.+|+|+|||.++.
T Consensus 2 I~~~nvsk~y~-------------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRYG-------------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhcC-------------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecc
Confidence 57888876663 4679999999999999999999999999999999999887 57899999999875
Q ss_pred h---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCc--ccccccCCCCCCCCCH
Q 000913 936 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP--LRQSLVGLPGVSGLST 1010 (1226)
Q Consensus 936 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~--~~~~~~g~~~~~~LSg 1010 (1226)
. ..+||.+|||-|+-.+||++||.||+.+-..+. ..++++.+++++|+|+++||.+ +.+++ +..|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCc
Confidence 4 457889999999999999999999999876654 3567888999999999999985 77877 568999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 000913 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1226)
Q Consensus 1011 Gqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y 1089 (1226)
||+|||.+||||+++|+||+||||++.|||.++..+++.++++.++ |+|||++|||.. |.+.+.||+.+|+. |+++.
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~-G~i~Q 216 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDA-GEIVQ 216 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecC-CeEEE
Confidence 9999999999999999999999999999999999999999998654 999999999987 78999999999985 78988
Q ss_pred eCCC
Q 000913 1090 VGPL 1093 (1226)
Q Consensus 1090 ~G~~ 1093 (1226)
.+++
T Consensus 217 ~~~P 220 (309)
T COG1125 217 YDTP 220 (309)
T ss_pred eCCH
Confidence 8875
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=357.16 Aligned_cols=194 Identities=27% Similarity=0.408 Sum_probs=170.8
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCCCHH
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1226)
..+|+|||++|.+||+++|+|||||||||||++|+|+..|+ +|+|.++|.++ ..+...++||+|++.++|.+||+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v--~~p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPV--TGPGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccc--CCCCCCEEEEeccCcccchhhHH
Confidence 45999999999999999999999999999999999999998 99999999987 34567899999999999999999
Q ss_pred HHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 000913 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1226)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1226)
||+.|+...++... .+...+++.+|+.+||....| +++.+|
T Consensus 91 ~NV~l~l~~~~~~~----------------------------------~e~~~~a~~~L~~VgL~~~~~-----~~P~qL 131 (248)
T COG1116 91 DNVALGLELRGKSK----------------------------------AEARERAKELLELVGLAGFED-----KYPHQL 131 (248)
T ss_pred hhheehhhccccch----------------------------------HhHHHHHHHHHHHcCCcchhh-----cCcccc
Confidence 99999987764211 112235678899999998777 456789
Q ss_pred ChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcC--Ce
Q 000913 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD--GQ 402 (1226)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~--G~ 402 (1226)
||||||||+|||||+.+|++|+||||+++||+.|+..+.+.|.++.+..+ .+|+.++|+..|+..++|||++|++ |+
T Consensus 132 SGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~-~TvllVTHdi~EAv~LsdRivvl~~~P~~ 210 (248)
T COG1116 132 SGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETR-KTVLLVTHDVDEAVYLADRVVVLSNRPGR 210 (248)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhC-CEEEEEeCCHHHHHhhhCEEEEecCCCcc
Confidence 99999999999999999999999999999999999999999998887554 5555689999999999999999998 44
Q ss_pred E
Q 000913 403 I 403 (1226)
Q Consensus 403 i 403 (1226)
|
T Consensus 211 i 211 (248)
T COG1116 211 I 211 (248)
T ss_pred e
Confidence 5
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=352.14 Aligned_cols=220 Identities=26% Similarity=0.334 Sum_probs=188.1
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|++..++ +++++|+|||+.|++||++||+|+|||||||||++|.|... +.+|+|.++|..+
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccch
Confidence 478888887764 35689999999999999999999999999999999999765 5689999999764
Q ss_pred Ch------hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcC-----CCCCHHHHHHHHHHHHHHcCCCcccccccCCC
Q 000913 935 KQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-----PEVDSETRKMFIDEVMELVELNPLRQSLVGLP 1003 (1226)
Q Consensus 935 ~~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~-----~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~ 1003 (1226)
.. ..+++.+||++|++.+.+.+||.+|+..+..-+.+ -....++.+..+-++|+.+|+.+.+....
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra--- 145 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA--- 145 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh---
Confidence 32 34677899999999999999999999876422211 12333445566778999999998887774
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEe
Q 000913 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1226)
Q Consensus 1004 ~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~H~p~~~i~~~~D~v~ll~ 1082 (1226)
..|||||+|||+|||||+.+|+||+.|||+++|||.+++.||+.|+++++ +|.|||++.||... ..++|||++-|+
T Consensus 146 --~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~ 222 (258)
T COG3638 146 --STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLK 222 (258)
T ss_pred --ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEec
Confidence 46999999999999999999999999999999999999999999999975 59999999999875 778999999998
Q ss_pred cCcEEEEeCCCCc
Q 000913 1083 RGGQEIYVGPLGR 1095 (1226)
Q Consensus 1083 ~Gg~~~y~G~~~~ 1095 (1226)
. |+++|.||..+
T Consensus 223 ~-G~ivfDg~~~e 234 (258)
T COG3638 223 A-GRIVFDGPASE 234 (258)
T ss_pred C-CcEEEeCChhh
Confidence 6 79999999754
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=344.77 Aligned_cols=201 Identities=28% Similarity=0.370 Sum_probs=184.6
Q ss_pred eEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh--hhhcceeeEeecCCCCCCCCCH
Q 000913 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFARISGYCEQNDIHSPFVTI 958 (1226)
Q Consensus 881 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lTv 958 (1226)
.++++||||+++.||++||+|+|||||||+|++|++... +.+|.|.++|.+... ...++.+|.++.+--++..||+
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~ 92 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTA 92 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChHHHhhhcceecCCcChhhhhhH
Confidence 348999999999999999999999999999999999887 568999999998643 4577889999988888999999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000913 959 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038 (1226)
Q Consensus 959 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgL 1038 (1226)
+|||.|.+.+.. ....+.+++++++.+.++|.++.|+.+| ++|.|+||||+|||||+++|++++||||||||
T Consensus 93 rEnl~~Fa~L~~---l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGL 164 (245)
T COG4555 93 RENLKYFARLNG---LSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGL 164 (245)
T ss_pred HHHHHHHHHHhh---hhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCc
Confidence 999999998864 4567778899999999999999999976 69999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 000913 1039 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1039 D~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
|..+.+.+.+.++++.+.|++||++||.+. ++..+||++++|++ |++++.|..
T Consensus 165 Di~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~ 217 (245)
T COG4555 165 DIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSI 217 (245)
T ss_pred cHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCH
Confidence 999999999999999988999999999986 78889999999997 799999985
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=376.72 Aligned_cols=212 Identities=34% Similarity=0.488 Sum_probs=184.4
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCC--CccceEEEecCCCCCCCCC
Q 000913 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYISQHDNHIGEM 241 (1226)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~--~~~~~~~yv~Q~d~~~~~l 241 (1226)
.+.+|+||||.|++|++++|+||||||||||||+|+|++.|+ +|+|.++|.+.... ..++.+|||+|++.+++.+
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~l 93 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPEL 93 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccc
Confidence 367999999999999999999999999999999999999998 99999999887652 3357899999999999999
Q ss_pred CHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 000913 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1226)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1226)
||+|||.|.+++++.... .....++++++.+||++..++ .+
T Consensus 94 T~~e~l~~~~~l~~~~~~----------------------------------~~~~~~~~~l~~~~L~~~~~~-----~~ 134 (293)
T COG1131 94 TVRENLEFFARLYGLSKE----------------------------------EAEERIEELLELFGLEDKANK-----KV 134 (293)
T ss_pred cHHHHHHHHHHHhCCChh----------------------------------HHHHHHHHHHHHcCCchhhCc-----ch
Confidence 999999999988764210 112357889999999984443 45
Q ss_pred CCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCC
Q 000913 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1226)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1226)
++||+||||||+||.||+++|++|||||||+|||+.++.++.+.|++++.. ++++|+..+|...++..+||+|++|++|
T Consensus 135 ~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~-g~~tvlissH~l~e~~~~~d~v~il~~G 213 (293)
T COG1131 135 RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE-GGVTILLSTHILEEAEELCDRVIILNDG 213 (293)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC-CCcEEEEeCCcHHHHHHhCCEEEEEeCC
Confidence 679999999999999999999999999999999999999999999999864 4355555778889999999999999999
Q ss_pred eEEEecChhHHHHHHHh
Q 000913 402 QIVYQGPRELVLEFFAS 418 (1226)
Q Consensus 402 ~iv~~G~~~~~~~~F~~ 418 (1226)
++++.|+.+++...+..
T Consensus 214 ~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 214 KIIAEGTPEELKEKFGG 230 (293)
T ss_pred EEEEeCCHHHHHHhhcc
Confidence 99999999998776544
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=348.29 Aligned_cols=209 Identities=26% Similarity=0.370 Sum_probs=178.5
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc------cceEEEecCCCCCC
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNHI 238 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1226)
+.||+|||++|++||+++|+|||||||||||++|.|++.|+ +|+|.++|.++.+... ++.+|+++|+-.+|
T Consensus 21 ~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALF 97 (263)
T COG1127 21 RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALF 97 (263)
T ss_pred EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeeccccc
Confidence 45999999999999999999999999999999999999999 9999999999876643 36799999999999
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 000913 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1226)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1226)
..+||+||+.|..+-... .|+ ...+..+..-|+..||+.. +++
T Consensus 98 ssltV~eNVafplre~~~-------------------lp~--------------~~i~~lv~~KL~~VGL~~~----~~~ 140 (263)
T COG1127 98 SSLTVFENVAFPLREHTK-------------------LPE--------------SLIRELVLMKLELVGLRGA----AAD 140 (263)
T ss_pred cccchhHhhheehHhhcc-------------------CCH--------------HHHHHHHHHHHHhcCCChh----hhh
Confidence 999999999997653311 010 1112233444778899754 345
Q ss_pred cccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEE
Q 000913 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1226)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1226)
.++.+||||++||+++|||++.+|+++|+||||+||||.++..+.+.++++.+..+. +++.++|+.++++..+|+|++|
T Consensus 141 ~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~-T~i~VTHDl~s~~~i~Drv~~L 219 (263)
T COG1127 141 LYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGL-TVIMVTHDLDSLLTIADRVAVL 219 (263)
T ss_pred hCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCC-EEEEEECChHHHHhhhceEEEE
Confidence 678889999999999999999999999999999999999999999999998776554 4555889999999999999999
Q ss_pred cCCeEEEecChhHHHH
Q 000913 399 SDGQIVYQGPRELVLE 414 (1226)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1226)
.+|+|+.+|+++++.+
T Consensus 220 ~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 220 ADGKVIAEGTPEELLA 235 (263)
T ss_pred eCCEEEEeCCHHHHHh
Confidence 9999999999999864
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=360.36 Aligned_cols=223 Identities=29% Similarity=0.434 Sum_probs=188.4
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCc---cCCCCCc-cceEEEecCCCCCCC
Q 000913 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH---DMDEFVP-QRTAAYISQHDNHIG 239 (1226)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~---~~~~~~~-~~~~~yv~Q~d~~~~ 239 (1226)
...+++|||+.|+.||+++|+|||||||||||++|||+..|+ +|.|.+||. +.++... .|.||||+|+-.+|+
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 355899999999999999999999999999999999999999 999999999 6655433 388999999999999
Q ss_pred CCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 000913 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1226)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1226)
.|||.+||+|+.+++.... . ..+.+.+++++|+.+.|++.++ +
T Consensus 91 HmtVa~NIAFGl~~~~~~p-----~---------------------------~~~~r~rv~elL~lvqL~~la~-----r 133 (345)
T COG1118 91 HMTVADNIAFGLKVRKERP-----S---------------------------EAEIRARVEELLRLVQLEGLAD-----R 133 (345)
T ss_pred cchHHhhhhhcccccccCC-----C---------------------------hhhHHHHHHHHHHHhcccchhh-----c
Confidence 9999999999997762100 0 1123456788899999987655 6
Q ss_pred ccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEc
Q 000913 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1226)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1226)
++.+|||||||||++||||+..|++|+||||+++||..-+..+-+.|+++....+ .+.+.++|+..|++++||+|++|+
T Consensus 134 yP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~-~ttvfVTHD~eea~~ladrvvvl~ 212 (345)
T COG1118 134 YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLG-VTTVFVTHDQEEALELADRVVVLN 212 (345)
T ss_pred CchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhC-ceEEEEeCCHHHHHhhcceEEEec
Confidence 6788999999999999999999999999999999999999999999999765444 445558899999999999999999
Q ss_pred CCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHH
Q 000913 400 DGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQE 435 (1226)
Q Consensus 400 ~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~ 435 (1226)
+|+|...||++++. .-|...-++.|+-+
T Consensus 213 ~G~Ieqvg~p~ev~--------~~P~s~fV~~f~G~ 240 (345)
T COG1118 213 QGRIEQVGPPDEVY--------DHPASRFVARFLGE 240 (345)
T ss_pred CCeeeeeCCHHHHh--------cCCCccceeccccc
Confidence 99999999999984 34555555555433
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=361.25 Aligned_cols=204 Identities=29% Similarity=0.450 Sum_probs=185.8
Q ss_pred ceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCc---cCCh-hhhcceeeEeecCCCCCCC
Q 000913 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY---PKKQ-ETFARISGYCEQNDIHSPF 955 (1226)
Q Consensus 880 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~---~~~~-~~~~~~~gyv~Q~~~~~~~ 955 (1226)
...+++|||+.|+.||++||+|||||||||||++|||..+ +..|.|.+||. +.++ ....|.+|||+|+..+++.
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~H 91 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPH 91 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhcceeEEEechhhccc
Confidence 4578999999999999999999999999999999999987 56899999998 5444 3456789999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000913 956 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1035 (1226)
Q Consensus 956 lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPT 1035 (1226)
|||.+|+.|+...+ ...++..+.+.+|.++|+.+.|+++.+.+ +..|||||||||++||||+.+|++|+||||+
T Consensus 92 mtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDEPf 165 (345)
T COG1118 92 MTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEPF 165 (345)
T ss_pred chHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecCCc
Confidence 99999999998776 34456778889999999999999999988 4679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 000913 1036 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1036 sgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
++||+.-++.+.+.|+++.+. |.|+|++|||+. ++++.+|||++|++ |++...||.
T Consensus 166 ~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p 222 (345)
T COG1118 166 GALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPP 222 (345)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCH
Confidence 999999999999999999766 999999999997 79999999999997 689988886
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=342.41 Aligned_cols=215 Identities=26% Similarity=0.389 Sum_probs=180.2
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc------cceEEEecCCCCCC
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNHI 238 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1226)
+++|+|||+.|++|||++|+|||||||||||++|.|+.+++ +|+|.+||.++..... ++.+||++|+..+.
T Consensus 17 ~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv 93 (258)
T COG3638 17 HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLV 93 (258)
T ss_pred ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCCcc
Confidence 45999999999999999999999999999999999999998 9999999988765542 46899999999999
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 000913 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1226)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1226)
+.+||.+|+..+..-+. .... .-.++.+ ++.+..+-..|+.+|+.+.+.+..+
T Consensus 94 ~r~sv~~NVl~grl~~~--s~~~---------slfglfs---------------k~dk~~Al~aLervgi~~~A~qra~- 146 (258)
T COG3638 94 PRLSVLENVLLGRLGYT--STWR---------SLFGLFS---------------KEDKAQALDALERVGILDKAYQRAS- 146 (258)
T ss_pred cccHHHHHHHhhhcccc--hHHH---------HHhCCCC---------------HHHHHHHHHHHHHcCcHHHHHHHhc-
Confidence 99999999998763321 1100 0111111 1223345567899999988887765
Q ss_pred cccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEE
Q 000913 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1226)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1226)
.|||||+|||+|||+|+.+|++++.|||+++||+.++.++++.|+++....+.|+|+. +|...-+.++||||+-|
T Consensus 147 ----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~n-LH~vdlA~~Y~~Riigl 221 (258)
T COG3638 147 ----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVN-LHQVDLAKKYADRIIGL 221 (258)
T ss_pred ----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEE-echHHHHHHHHhhheEe
Confidence 4999999999999999999999999999999999999999999999988666666665 55678999999999999
Q ss_pred cCCeEEEecChhHHHH
Q 000913 399 SDGQIVYQGPRELVLE 414 (1226)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1226)
++|+|+|+||++++-+
T Consensus 222 ~~G~ivfDg~~~el~~ 237 (258)
T COG3638 222 KAGRIVFDGPASELTD 237 (258)
T ss_pred cCCcEEEeCChhhhhH
Confidence 9999999999988654
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=352.76 Aligned_cols=208 Identities=27% Similarity=0.443 Sum_probs=175.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCC--CCCCCCCH
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD--NHIGEMTV 243 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d--~~~~~lTV 243 (1226)
++|+|||+.+++|++++|+||||||||||+|+|.|++.|. +|+|.++|.+..+...+..||||||.. .+-.-+||
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV 94 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITV 94 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCCcCH
Confidence 3999999999999999999999999999999999999998 999999999887776678999999953 33445799
Q ss_pred HHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 000913 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1226)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1226)
+|.+..+..-+. + ..... ..+.+..++++|+.+|+.+.+|..+|+
T Consensus 95 ~d~V~~g~~~~~-g----~~~~~-------------------------~~~d~~~v~~aL~~Vgm~~~~~r~i~~----- 139 (254)
T COG1121 95 KDVVLLGRYGKK-G----WFRRL-------------------------NKKDKEKVDEALERVGMEDLRDRQIGE----- 139 (254)
T ss_pred HHHHHccCcccc-c----ccccc-------------------------cHHHHHHHHHHHHHcCchhhhCCcccc-----
Confidence 999988642210 0 00000 111234678899999999999988875
Q ss_pred CChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeE
Q 000913 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1226)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1226)
|||||+|||-|||||+++|++|+|||||+|+|+.++..|++.|+++.+. +.+|+.++|+...+.++||+|+.|+. ++
T Consensus 140 LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~~~~D~vi~Ln~-~~ 216 (254)
T COG1121 140 LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVMAYFDRVICLNR-HL 216 (254)
T ss_pred cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhHhhCCEEEEEcC-ee
Confidence 9999999999999999999999999999999999999999999998764 45556689999999999999999965 78
Q ss_pred EEecChhHHHH
Q 000913 404 VYQGPRELVLE 414 (1226)
Q Consensus 404 v~~G~~~~~~~ 414 (1226)
++.|+++++.+
T Consensus 217 ~~~G~~~~~~~ 227 (254)
T COG1121 217 IASGPPEEVLT 227 (254)
T ss_pred EeccChhhccC
Confidence 89999988753
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=332.08 Aligned_cols=213 Identities=25% Similarity=0.327 Sum_probs=185.0
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
+.|++|+..|+. .+.+|+||||++++||++-|+|||||||||||++|.+... +..|.|.++|+++.
T Consensus 2 I~f~~V~k~Y~~------------g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYPG------------GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcCC------------CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecc
Confidence 578888877753 2569999999999999999999999999999999999766 56899999999864
Q ss_pred h------hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 000913 936 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1226)
Q Consensus 936 ~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LS 1009 (1226)
. ...+|.+|+|+||..+.+..||+||+.|...... .+..+.+++|.++|+.+||.+..+.+ +..||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G---~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIG---KPPREIRRRVSEVLDLVGLKHKARAL-----PSQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhccC---CCHHHHHHHHHHHHHHhccchhhhcC-----ccccC
Confidence 3 2367889999999999999999999999866653 35667788999999999999988877 46799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 000913 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1226)
Q Consensus 1010 gGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y 1089 (1226)
|||+|||+||||++.+|++|+.||||.+|||..+..||+++.++.+.|.|||+.|||... +-.+-.+++.|.+ |+++.
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~l-v~~~~~rvl~l~~-Grl~~ 217 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLEL-VNRMRHRVLALED-GRLVR 217 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHH-HHhccCcEEEEeC-CEEEe
Confidence 999999999999999999999999999999999999999999999999999999998643 4445568888886 68876
Q ss_pred eCC
Q 000913 1090 VGP 1092 (1226)
Q Consensus 1090 ~G~ 1092 (1226)
...
T Consensus 218 d~~ 220 (223)
T COG2884 218 DES 220 (223)
T ss_pred ccc
Confidence 543
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=372.51 Aligned_cols=215 Identities=27% Similarity=0.405 Sum_probs=188.6
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000913 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1226)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1226)
..++++|++..++ ++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 6 ~~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~ 70 (306)
T PRK13537 6 APIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEP 70 (306)
T ss_pred ceEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEe
Confidence 3588899988773 2469999999999999999999999999999999999876 568999999988
Q ss_pred CCh--hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 000913 934 KKQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1226)
Q Consensus 934 ~~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgG 1011 (1226)
... ...++.+|||+|++.+++.+||+||+.|.+.++. .+..+..++++++++.++|.+..++.+ ++||||
T Consensus 71 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 142 (306)
T PRK13537 71 VPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKV-----GELSGG 142 (306)
T ss_pred cccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHH
Confidence 643 2356789999999999999999999998765542 233444567889999999998888774 479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 000913 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1226)
Q Consensus 1012 qrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G 1091 (1226)
|||||+||+||+++|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 143 ~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g 220 (306)
T PRK13537 143 MKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEG 220 (306)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEC
Confidence 999999999999999999999999999999999999999999878999999999987 68889999999986 7999999
Q ss_pred CC
Q 000913 1092 PL 1093 (1226)
Q Consensus 1092 ~~ 1093 (1226)
+.
T Consensus 221 ~~ 222 (306)
T PRK13537 221 AP 222 (306)
T ss_pred CH
Confidence 85
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=409.95 Aligned_cols=258 Identities=27% Similarity=0.362 Sum_probs=211.8
Q ss_pred hHhhHHHHHHhhhccccChHHHHHHHHHHhhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhh
Q 000913 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1226)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1226)
.|+.+...+|+.++++.++|.=..+ .....+....+++|+|++|.+...
T Consensus 436 ~q~~~~~~~rL~dil~~~~E~~~~~-----~~~~~~~~~g~I~~~nvsf~y~~~-------------------------- 484 (709)
T COG2274 436 FQQAKVALERLGDILDTPPEQEGDK-----TLIHLPKLQGEIEFENVSFRYGPD-------------------------- 484 (709)
T ss_pred HHHHHHHHHHHHHHhcCCccccccc-----ccccccccCceEEEEEEEEEeCCC--------------------------
Confidence 7889999999999999988821111 023344456789999999998531
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCC
Q 000913 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1226)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1226)
...+|+|+|++|+|||.++|+|+||||||||+|+|+|++.|. +|+|.+||+|+++..+ |+.++||+|+
T Consensus 485 ------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~ 555 (709)
T COG2274 485 ------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQD 555 (709)
T ss_pred ------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEccc
Confidence 125999999999999999999999999999999999999998 9999999999887765 5899999997
Q ss_pred CCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 000913 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1226)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1226)
+ ++.+.||+||+.++. +....|...++++....+ -.+..++..+||
T Consensus 556 ~-~Lf~gSI~eNi~l~~----p~~~~e~i~~A~~~ag~~-----------------------------~fI~~lP~gy~t 601 (709)
T COG2274 556 P-FLFSGSIRENIALGN----PEATDEEIIEAAQLAGAH-----------------------------EFIENLPMGYDT 601 (709)
T ss_pred c-hhhcCcHHHHHhcCC----CCCCHHHHHHHHHHhCcH-----------------------------HHHHhccccccc
Confidence 6 555689999999875 333334444444432211 114578999999
Q ss_pred cccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCc
Q 000913 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1226)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1226)
.||+.+. +||||||||++|||||+++|+||+||||||+||+.+...|.+.|.++. .++|+|+..| +..+.+.||+
T Consensus 602 ~v~E~G~-~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaH--Rl~ti~~adr 676 (709)
T COG2274 602 PVGEGGA-NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIAH--RLSTIRSADR 676 (709)
T ss_pred ccccCCC-CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEEc--cchHhhhccE
Confidence 9998665 699999999999999999999999999999999999999999999865 3566666543 4678999999
Q ss_pred EEEEcCCeEEEecChhHHHH
Q 000913 395 IILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1226)
|+||++|+|+.+|+++++++
T Consensus 677 IiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 677 IIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred EEEccCCceeccCCHHHHHH
Confidence 99999999999999999986
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=370.18 Aligned_cols=214 Identities=28% Similarity=0.399 Sum_probs=192.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|++..+. +..+|+|||++|+.||+++|+|||||||||||++|||+.. +.+|+|.|+|.+.
T Consensus 3 ~i~l~~v~K~yg-------------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFG-------------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 477888877763 2229999999999999999999999999999999999987 6789999999988
Q ss_pred Ch-hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 000913 935 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1226)
Q Consensus 935 ~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqr 1013 (1226)
+. ...+|.+++|+|+..++|.|||+||+.|+..++. .++++.+++|.++.+.|+|.++.+++ +++||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~---~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG---VPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCC---CchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhH
Confidence 66 3456889999999999999999999999977663 45678889999999999999999998 467999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCC
Q 000913 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1226)
Q Consensus 1014 qrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~ 1092 (1226)
|||+|||||+++|++++||||.|+||+..+..+...|+++.++ |.|+|.+|||.. |.+.++||+.+|+ +|++...|+
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~-~G~i~Q~g~ 217 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMN-DGRIQQVGT 217 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEe-CCeeeecCC
Confidence 9999999999999999999999999999999999999998754 899999999975 7999999999999 589999997
Q ss_pred C
Q 000913 1093 L 1093 (1226)
Q Consensus 1093 ~ 1093 (1226)
+
T Consensus 218 p 218 (338)
T COG3839 218 P 218 (338)
T ss_pred h
Confidence 6
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=336.35 Aligned_cols=221 Identities=26% Similarity=0.399 Sum_probs=178.8
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCceeEEEEcCccCCCC-----CccceEEEecCCCCC
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNH 237 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1226)
+.+|+|||+.|+++++||++|||||||||||++|....+ |..+++|+|.|+|+++.+. ..|+.+|.|+|.++-
T Consensus 20 ~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnP 99 (253)
T COG1117 20 KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNP 99 (253)
T ss_pred hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCC
Confidence 349999999999999999999999999999999998865 3468899999999997553 236899999999999
Q ss_pred CCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc-cccccc
Q 000913 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMV 316 (1226)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~v 316 (1226)
|| +|++||+.|+.+++|... +.+. .+++..|+.-+|-+ ..|.+
T Consensus 100 Fp-~SIydNVayG~r~~g~~~--~~ld--------------------------------eiVe~sLk~AaLWdEVKDrL- 143 (253)
T COG1117 100 FP-MSIYDNVAYGLRLHGIKD--KELD--------------------------------EIVESSLKKAALWDEVKDRL- 143 (253)
T ss_pred CC-chHHHHHHHhHHhhccch--HHHH--------------------------------HHHHHHHHHhHhHHHhHHHh-
Confidence 99 999999999999887532 1111 22333444444432 22222
Q ss_pred cccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEE
Q 000913 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1226)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1226)
++...+|||||+||++|||+|+-+|+||+||||||+|||.++..|-+.+.++.+ .-+||.++|.+.++.+..|+..
T Consensus 144 -~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~---~yTIviVTHnmqQAaRvSD~ta 219 (253)
T COG1117 144 -HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK---KYTIVIVTHNMQQAARVSDYTA 219 (253)
T ss_pred -hCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh---ccEEEEEeCCHHHHHHHhHhhh
Confidence 122447999999999999999999999999999999999999999999998752 3445557899999999999999
Q ss_pred EEcCCeEEEecChhHHHHHHHhcCCCCCCCCChHHHH
Q 000913 397 LLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 433 (1226)
Q Consensus 397 lL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl 433 (1226)
.+..|++|++|+.+++ |.-|.++...||+
T Consensus 220 Ff~~G~LvE~g~T~~i--------F~~P~~~~TedYi 248 (253)
T COG1117 220 FFYLGELVEFGPTDKI--------FTNPKHKRTEDYI 248 (253)
T ss_pred hhcccEEEEEcCHHhh--------hcCccHHHHHHHh
Confidence 9999999999999987 4556666666654
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=372.94 Aligned_cols=215 Identities=27% Similarity=0.386 Sum_probs=192.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++||+..+. +..+|+|||++|++||+++|+|||||||||||++|||... +.+|+|.++|.++
T Consensus 5 ~l~i~~v~k~yg-------------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i 69 (352)
T COG3842 5 ALEIRNVSKSFG-------------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDI 69 (352)
T ss_pred eEEEEeeeeecC-------------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 578888877663 4689999999999999999999999999999999999887 5689999999987
Q ss_pred Chh-hhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 000913 935 KQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1226)
Q Consensus 935 ~~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqr 1013 (1226)
... ..+|.+|+|+|+-.+||+|||+||+.|+..++ ....+++.+++|+++++.++|.++.++. +..|||||+
T Consensus 70 ~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~-----p~qLSGGQq 142 (352)
T COG3842 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRK-----PHQLSGGQQ 142 (352)
T ss_pred CCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhC-----hhhhChHHH
Confidence 653 45788999999999999999999999987633 3345667888999999999999999988 457999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCC
Q 000913 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1226)
Q Consensus 1014 qrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~ 1092 (1226)
|||+|||||+.+|++|+||||.|+||..-+..+..-|+++.+ .|.|.|++|||.. |.+.++|||.+|++ |++...|+
T Consensus 143 QRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~-G~I~Q~gt 220 (352)
T COG3842 143 QRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMND-GRIEQVGT 220 (352)
T ss_pred HHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccC-CceeecCC
Confidence 999999999999999999999999999999999999999864 4999999999986 78999999999986 79998888
Q ss_pred C
Q 000913 1093 L 1093 (1226)
Q Consensus 1093 ~ 1093 (1226)
+
T Consensus 221 P 221 (352)
T COG3842 221 P 221 (352)
T ss_pred H
Confidence 6
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=345.40 Aligned_cols=196 Identities=30% Similarity=0.439 Sum_probs=167.1
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-------cceEEEecCCCCC
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1226)
.++|+|||+.|++||+++|+|||||||||||++|+|+..|+ +|.|.++|.++..... ++.+|||+|+..+
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nL 94 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL 94 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCC
Confidence 67999999999999999999999999999999999999998 9999999998876542 3679999999999
Q ss_pred CCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 000913 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1226)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1226)
+|++||+||+.+++.+.+.... +.....+.+++.+||.+..+.
T Consensus 95 l~~ltv~ENv~lpl~~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~~--- 137 (226)
T COG1136 95 LPDLTVLENVELPLLIAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLLK--- 137 (226)
T ss_pred CCCCCHHHHHHhHHHHcCCChh----------------------------------HHHHHHHHHHHhcCChhhhcc---
Confidence 9999999999988766543211 112345778899999865551
Q ss_pred ccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEE
Q 000913 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1226)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iil 397 (1226)
..+..|||||||||+|||||+.+|++++.||||.+||+.++..|++.++++.+..+.|+|+ ++|+ +++...|||++.
T Consensus 138 -~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~-VTHd-~~lA~~~dr~i~ 214 (226)
T COG1136 138 -KKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIM-VTHD-PELAKYADRVIE 214 (226)
T ss_pred -CCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEE-EcCC-HHHHHhCCEEEE
Confidence 3345799999999999999999999999999999999999999999999988754445544 5665 678889999999
Q ss_pred EcCCeE
Q 000913 398 LSDGQI 403 (1226)
Q Consensus 398 L~~G~i 403 (1226)
|.+|++
T Consensus 215 l~dG~~ 220 (226)
T COG1136 215 LKDGKI 220 (226)
T ss_pred EeCCee
Confidence 999994
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=332.70 Aligned_cols=217 Identities=23% Similarity=0.324 Sum_probs=187.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCC---CCceEEEEEEEcC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGNITISG 931 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~---~~~~~~G~i~i~g 931 (1226)
.++.+|++.+|. ++.+|+|||+.|++++++||||||||||||||++|.... ++-.++|+|.++|
T Consensus 7 ~~~~~~l~~yYg-------------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g 73 (253)
T COG1117 7 AIEVRDLNLYYG-------------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG 73 (253)
T ss_pred eeEecceeEEEC-------------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC
Confidence 577888887774 467999999999999999999999999999999998743 3446789999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCC
Q 000913 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGV 1005 (1226)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~ 1005 (1226)
.++.. ..+|+.+|.|+|.+..|| +|++||+.|+.++....+ ++.++.|++.|+...|.+ .+|++-.. .
T Consensus 74 ~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~s--a 147 (253)
T COG1117 74 KNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHKS--A 147 (253)
T ss_pred eeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhCC--c
Confidence 87643 357889999999999999 999999999987765443 677888999999998865 34444322 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 000913 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1226)
Q Consensus 1006 ~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg 1085 (1226)
.+|||||+|||||||+|+.+|+||+||||||+|||.+...|-+++.++. +.-|||++||.+. ...+..|+..++.. |
T Consensus 148 ~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~-G 224 (253)
T COG1117 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL-G 224 (253)
T ss_pred cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-c
Confidence 5799999999999999999999999999999999999999999999997 4699999999986 57888999999986 6
Q ss_pred EEEEeCCC
Q 000913 1086 QEIYVGPL 1093 (1226)
Q Consensus 1086 ~~~y~G~~ 1093 (1226)
+++.+|+.
T Consensus 225 ~LvE~g~T 232 (253)
T COG1117 225 ELVEFGPT 232 (253)
T ss_pred EEEEEcCH
Confidence 99999986
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=329.72 Aligned_cols=206 Identities=32% Similarity=0.377 Sum_probs=182.3
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC--ccceEEEecCCCCCCCCCC
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMT 242 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1226)
..+++||||.++.|++++|+|||||||||+|++|++++.|+ +|.|++||.+..+.. .++.+|.++-+..++..||
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT 91 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLT 91 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcChhhhhh
Confidence 34899999999999999999999999999999999999999 999999999875432 3588999998888999999
Q ss_pred HHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 000913 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1226)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1226)
++|||.|.+++.+.. +.+.+.+++.+.+.|+|.+|.|+.+|+
T Consensus 92 ~rEnl~~Fa~L~~l~----------------------------------~~~~kari~~l~k~l~l~~~~~rRv~~---- 133 (245)
T COG4555 92 ARENLKYFARLNGLS----------------------------------RKEIKARIAELSKRLQLLEYLDRRVGE---- 133 (245)
T ss_pred HHHHHHHHHHHhhhh----------------------------------hhHHHHHHHHHHHHhChHHHHHHHHhh----
Confidence 999999988775421 122345678899999999999999885
Q ss_pred CCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCe
Q 000913 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1226)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1226)
+|-|+||||+|||||+.+|++++|||||||||..+...+.+.++++. ..+.+|+..+|..+|+..+||+|++|++|+
T Consensus 134 -~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k--~egr~viFSSH~m~EvealCDrvivlh~Ge 210 (245)
T COG4555 134 -FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK--NEGRAVIFSSHIMQEVEALCDRVIVLHKGE 210 (245)
T ss_pred -hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh--cCCcEEEEecccHHHHHHhhheEEEEecCc
Confidence 99999999999999999999999999999999999999999999863 345666678899999999999999999999
Q ss_pred EEEecChhHHHH
Q 000913 403 IVYQGPRELVLE 414 (1226)
Q Consensus 403 iv~~G~~~~~~~ 414 (1226)
+|+.|+.+++..
T Consensus 211 vv~~gs~~~l~~ 222 (245)
T COG4555 211 VVLEGSIEALDA 222 (245)
T ss_pred EEEcCCHHHHHH
Confidence 999999988754
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=372.22 Aligned_cols=229 Identities=24% Similarity=0.358 Sum_probs=194.8
Q ss_pred cCCCCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCC
Q 000913 110 VGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSS 189 (1226)
Q Consensus 110 ~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~Gs 189 (1226)
..+..|...|+|+||++++.. +++||+++||+|++|+-+||+|+|||
T Consensus 343 ~~i~~~~~~I~F~dV~f~y~~---------------------------------k~~iL~gvsf~I~kGekVaIvG~nGs 389 (591)
T KOG0057|consen 343 LPIELFGGSIEFDDVHFSYGP---------------------------------KRKVLKGVSFTIPKGEKVAIVGSNGS 389 (591)
T ss_pred CCcccCCCcEEEEeeEEEeCC---------------------------------CCceecceeEEecCCCEEEEECCCCC
Confidence 567778889999999999842 23499999999999999999999999
Q ss_pred cHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCCCHHHHHHHHhHhcCCCchhhHhHHH
Q 000913 190 GKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTEL 266 (1226)
Q Consensus 190 GKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~ 266 (1226)
||||+|++|.++++ . +|+|++||+++++..+ |+.||||||+ .++++-||.+||.|+. +...++...++
T Consensus 390 GKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd-~~LFndTIl~NI~YGn----~sas~eeV~e~ 460 (591)
T KOG0057|consen 390 GKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQD-SVLFNDTILYNIKYGN----PSASDEEVVEA 460 (591)
T ss_pred CHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCc-ccccchhHHHHhhcCC----CCcCHHHHHHH
Confidence 99999999999998 5 9999999999987654 5789999995 5566679999999985 33455666666
Q ss_pred HHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHhhHHHHHHHHhcCCccce
Q 000913 267 ARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346 (1226)
Q Consensus 267 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vll 346 (1226)
|++...++ -+..|++.++|.||+++.. |||||||||++|||++.+|+|++
T Consensus 461 ~k~a~~hd-----------------------------~i~~l~~GY~T~VGerG~~-LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 461 CKRAGLHD-----------------------------VISRLPDGYQTLVGERGLM-LSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred HHHcCcHH-----------------------------HHHhccccchhhHhhcccc-cccchHHHHHHHHHHhcCCCeEE
Confidence 66543211 1456899999999999875 99999999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEEEecChhHHHH
Q 000913 347 MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 347 LDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~ 414 (1226)
+|||||+||+.|..++++.+... ..++|+|+.+| ...+..-||+|++|++|++...|++++++.
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i~~~--~~~rTvI~IvH--~l~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMIMDV--MSGRTVIMIVH--RLDLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred ecCcccccchhhHHHHHHHHHHh--cCCCeEEEEEe--cchhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 99999999999999999999873 35667766554 346788899999999999999999999976
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-39 Score=368.72 Aligned_cols=217 Identities=23% Similarity=0.303 Sum_probs=187.2
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++.+. ..+.+|+||||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~~---------~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQGT---------KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCCC---------cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 67889988774210 12469999999999999999999999999999999999876 56899999998764
Q ss_pred hh------hhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 000913 936 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1226)
Q Consensus 936 ~~------~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LS 1009 (1226)
.. ..++.+||++|+..+++..||+||+.|..... ..+.++.++++.++++.++|.+..+..+ ..||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYP-----SNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 23567999999999999999999999875433 2345566678999999999998888764 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 000913 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1226)
Q Consensus 1010 gGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~ 1088 (1226)
|||||||+|||||+.+|++|+||||||+||+.++..+++.|+++.++ |.|||++||+++ .+.+.||++++|++ |+++
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~-G~iv 220 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 999999999986 47789999999985 7999
Q ss_pred EeCCC
Q 000913 1089 YVGPL 1093 (1226)
Q Consensus 1089 y~G~~ 1093 (1226)
..|+.
T Consensus 221 ~~g~~ 225 (343)
T TIGR02314 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 99985
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=366.46 Aligned_cols=206 Identities=25% Similarity=0.349 Sum_probs=177.2
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc------cceEEEecCCCCCC
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNHI 238 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1226)
.++|+||||+|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 45999999999999999999999999999999999999998 9999999998876532 45799999999999
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 000913 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1226)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1226)
+.+||+||+.|+....+... .+...++.++++.+||.+..|..
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~v~e~l~~vgL~~~~~~~--- 137 (343)
T TIGR02314 95 SSRTVFGNVALPLELDNTPK----------------------------------DEIKRKVTELLALVGLGDKHDSY--- 137 (343)
T ss_pred ccCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCC---
Confidence 99999999999765432110 01123456789999998877755
Q ss_pred cccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEE
Q 000913 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1226)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1226)
+..|||||||||+|||||+.+|++|+||||||+||+.++..+++.|+++.+..+.| |+.++|+...+.++||+|++|
T Consensus 138 --~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~t-iiliTH~~~~v~~~~d~v~vl 214 (343)
T TIGR02314 138 --PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLT-ILLITHEMDVVKRICDCVAVI 214 (343)
T ss_pred --hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEE
Confidence 45699999999999999999999999999999999999999999999987543444 555788899999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000913 399 SDGQIVYQGPRELVL 413 (1226)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1226)
++|++++.|+++++.
T Consensus 215 ~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 215 SNGELIEQGTVSEIF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998874
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=353.10 Aligned_cols=213 Identities=24% Similarity=0.350 Sum_probs=181.4
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh
Q 000913 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1226)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1226)
+++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (235)
T cd03261 2 ELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISG 66 (235)
T ss_pred eEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 5678877763 2469999999999999999999999999999999999876 468999999987532
Q ss_pred ------hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 000913 937 ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1226)
Q Consensus 937 ------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSg 1010 (1226)
..+++.++|++|++.+++.+||+||+.+...... ..+.++.++++.++++.++|.+..++.+ ..|||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 139 (235)
T cd03261 67 LSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELSG 139 (235)
T ss_pred cChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 2345679999999988899999999988643221 1234445567889999999988777663 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 000913 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1226)
Q Consensus 1011 Gqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y 1089 (1226)
||||||+||++|+.+|+||+|||||+|||+.++..+++.|+++.+ .|+|||+++|+++ ++.+.+|++++|++ |++++
T Consensus 140 G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~~ 217 (235)
T cd03261 140 GMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVA 217 (235)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEEE
Confidence 999999999999999999999999999999999999999999976 4899999999987 47788999999986 78999
Q ss_pred eCCC
Q 000913 1090 VGPL 1093 (1226)
Q Consensus 1090 ~G~~ 1093 (1226)
.|+.
T Consensus 218 ~g~~ 221 (235)
T cd03261 218 EGTP 221 (235)
T ss_pred ecCH
Confidence 8874
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=369.02 Aligned_cols=205 Identities=28% Similarity=0.407 Sum_probs=177.9
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-cceEEEecCCCCCCCCCCHH
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1226)
.+|+|+|+.+++|++++|+|||||||||||++|+|+.+|+ +|+|.++|.++....+ ++.++||+|+..+||.+||+
T Consensus 18 ~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (353)
T TIGR03265 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVA 94 (353)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHH
Confidence 4899999999999999999999999999999999999998 9999999998865543 47899999999999999999
Q ss_pred HHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 000913 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1226)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1226)
||+.|+.+.++... .+....++.+++.+||++..|.. +..|
T Consensus 95 eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~l~L~~~~~~~-----~~~L 135 (353)
T TIGR03265 95 DNIAYGLKNRGMGR----------------------------------AEVAERVAELLDLVGLPGSERKY-----PGQL 135 (353)
T ss_pred HHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCCchhhCC-----hhhC
Confidence 99999875432110 01123567889999999877754 4579
Q ss_pred ChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEE
Q 000913 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1226)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1226)
||||||||+|||||+.+|+++|||||+++||..++.++.+.|+++.+.. ++++|.++|+..++..++|+|++|++|+++
T Consensus 136 SgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~ 214 (353)
T TIGR03265 136 SGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRL-GVTTIMVTHDQEEALSMADRIVVMNHGVIE 214 (353)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999876533 445555788899999999999999999999
Q ss_pred EecChhHHH
Q 000913 405 YQGPRELVL 413 (1226)
Q Consensus 405 ~~G~~~~~~ 413 (1226)
+.|+++++.
T Consensus 215 ~~g~~~~~~ 223 (353)
T TIGR03265 215 QVGTPQEIY 223 (353)
T ss_pred EEcCHHHHH
Confidence 999998874
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=367.72 Aligned_cols=205 Identities=24% Similarity=0.382 Sum_probs=178.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-cceEEEecCCCCCCCCCCHH
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1226)
.+|+|+|+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..++|++||+
T Consensus 20 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~ 96 (351)
T PRK11432 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLG 96 (351)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHH
Confidence 4899999999999999999999999999999999999998 9999999998876554 37899999999999999999
Q ss_pred HHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 000913 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1226)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1226)
||+.|+.+.++... .+....++++++.+||.+..+.. ++.|
T Consensus 97 eNi~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gl~~~~~r~-----~~~L 137 (351)
T PRK11432 97 ENVGYGLKMLGVPK----------------------------------EERKQRVKEALELVDLAGFEDRY-----VDQI 137 (351)
T ss_pred HHHHHHHhHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCC-----hhhC
Confidence 99999875443210 01123467789999998766644 5579
Q ss_pred ChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEE
Q 000913 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1226)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1226)
||||||||+|||||+.+|++|||||||++||+.++.++.+.|+++.+.. +++++.++|+..++.+++|+|++|++|+++
T Consensus 138 SgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~e~~~laD~i~vm~~G~i~ 216 (351)
T PRK11432 138 SGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQF-NITSLYVTHDQSEAFAVSDTVIVMNKGKIM 216 (351)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999886533 445566888999999999999999999999
Q ss_pred EecChhHHH
Q 000913 405 YQGPRELVL 413 (1226)
Q Consensus 405 ~~G~~~~~~ 413 (1226)
..|+++++.
T Consensus 217 ~~g~~~~~~ 225 (351)
T PRK11432 217 QIGSPQELY 225 (351)
T ss_pred EEcCHHHHH
Confidence 999999874
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=368.70 Aligned_cols=205 Identities=25% Similarity=0.363 Sum_probs=177.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-cceEEEecCCCCCCCCCCHH
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1226)
.+|+|+|+.+++|++++|+|||||||||||++|+|+.+|+ +|+|.++|.++....+ ++.++||+|+..++|++||+
T Consensus 18 ~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (356)
T PRK11650 18 QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVR 94 (356)
T ss_pred EEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHH
Confidence 4999999999999999999999999999999999999998 9999999998876544 37899999999999999999
Q ss_pred HHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 000913 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1226)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1226)
||+.|+.+..+... .+....++++++.+||++..+.. ++.|
T Consensus 95 eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~-----~~~L 135 (356)
T PRK11650 95 ENMAYGLKIRGMPK----------------------------------AEIEERVAEAARILELEPLLDRK-----PREL 135 (356)
T ss_pred HHHHhHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhhCC-----hhhC
Confidence 99999875432110 01123467789999998877654 4579
Q ss_pred ChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEE
Q 000913 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1226)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1226)
||||||||+|||||+.+|++|+|||||++||+.++..+.+.|+++.+.. ++++|.++|+..++..++|+|++|++|+++
T Consensus 136 SgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~l~D~i~vl~~G~i~ 214 (356)
T PRK11650 136 SGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRL-KTTSLYVTHDQVEAMTLADRVVVMNGGVAE 214 (356)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999999999999999999999999999876533 455566788899999999999999999999
Q ss_pred EecChhHHH
Q 000913 405 YQGPRELVL 413 (1226)
Q Consensus 405 ~~G~~~~~~ 413 (1226)
..|+++++.
T Consensus 215 ~~g~~~~~~ 223 (356)
T PRK11650 215 QIGTPVEVY 223 (356)
T ss_pred EECCHHHHH
Confidence 999998874
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=402.86 Aligned_cols=258 Identities=23% Similarity=0.383 Sum_probs=213.5
Q ss_pred hHhhHHHHHHhhhccccChHHHHHHHHHHhhhcCCCC--CcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHh
Q 000913 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDL--PKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYL 155 (1226)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 155 (1226)
...++....++++++|..+. +.. -+..+... -..+|+|+||+|.|+.
T Consensus 951 ~~ka~~Aa~~iF~i~dr~~~-----i~~-~~~~~~~~~~~~G~I~~~~V~F~YPs------------------------- 999 (1228)
T KOG0055|consen 951 ISKAKIAAGSIFEILDRKPT-----IDP-DSTSGGKLPNVKGDIEFRNVSFAYPT------------------------- 999 (1228)
T ss_pred HHHHHHHHHHHHHHhcCCCC-----CCC-CCCCCCccccceeEEEEeeeEeeCCC-------------------------
Confidence 45677888889999888774 211 11344333 3567999999999842
Q ss_pred hhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEec
Q 000913 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYIS 232 (1226)
Q Consensus 156 ~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~ 232 (1226)
+ +..+||+|+|+++++|+.+||+|||||||||...+|-++|+|+ +|.|.+||+++++++. |+.+|.|+
T Consensus 1000 -----R-P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~~i~lVs 1070 (1228)
T KOG0055|consen 1000 -----R-PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNLKWLRKQIGLVS 1070 (1228)
T ss_pred -----C-CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCHHHHHHhcceec
Confidence 2 4567999999999999999999999999999999999999998 9999999999998876 47899999
Q ss_pred CCCCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccc
Q 000913 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (1226)
Q Consensus 233 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1226)
|+|.+|. .|+||||.|+.. ....+.+.++++....+++ +.+|++.+
T Consensus 1071 QEP~LF~-~TIrENI~YG~~----~vs~~eIi~Aak~ANaH~F-----------------------------I~sLP~Gy 1116 (1228)
T KOG0055|consen 1071 QEPVLFN-GTIRENIAYGSE----EVSEEEIIEAAKLANAHNF-----------------------------ISSLPQGY 1116 (1228)
T ss_pred cCchhhc-ccHHHHHhccCC----CCCHHHHHHHHHHhhhHHH-----------------------------HhcCcCcc
Confidence 9997775 699999999821 1234455555555444332 56899999
Q ss_pred cccccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhc
Q 000913 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (1226)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 392 (1226)
||.||+++. +||||||||++||||+++||+||||||.||+||+.+.+-+.+.|.+.. .++|+|+.. |+..+.+.+
T Consensus 1117 DT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~--~gRT~IvIA--HRLSTIqna 1191 (1228)
T KOG0055|consen 1117 DTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM--EGRTTIVIA--HRLSTIQNA 1191 (1228)
T ss_pred cCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEEEe--cchhhhhcC
Confidence 999999887 599999999999999999999999999999999999999999999864 345555543 567899999
Q ss_pred CcEEEEcCCeEEEecChhHHHH
Q 000913 393 DDIILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 393 D~iilL~~G~iv~~G~~~~~~~ 414 (1226)
|.|+|+++|+|+++|+++++++
T Consensus 1192 D~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1192 DVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred CEEEEEECCEEEecccHHHHHh
Confidence 9999999999999999999975
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=367.58 Aligned_cols=206 Identities=23% Similarity=0.347 Sum_probs=178.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCce--eEEEEcCccCCCCCc-cceEEEecCCCCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVS--GTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMT 242 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~--G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lT 242 (1226)
.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ + |+|.++|.++....+ ++.++||+|+..+++.+|
T Consensus 19 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~t 95 (362)
T TIGR03258 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLK 95 (362)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCc
Confidence 4999999999999999999999999999999999999998 8 999999998865543 467999999999999999
Q ss_pred HHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 000913 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1226)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1226)
|+||+.|+.+..+... .+....++++++.+||++..|..+ +
T Consensus 96 v~enl~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~~~~-----~ 136 (362)
T TIGR03258 96 VEDNVAFGLRAQKMPK----------------------------------ADIAERVADALKLVGLGDAAAHLP-----A 136 (362)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCCchhhCCh-----h
Confidence 9999999875432110 011234677899999988777554 5
Q ss_pred CCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCe
Q 000913 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1226)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1226)
.|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..++++++.++|+..++..++|+|++|++|+
T Consensus 137 ~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~ 216 (362)
T TIGR03258 137 QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGR 216 (362)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999987653324556668899999999999999999999
Q ss_pred EEEecChhHHH
Q 000913 403 IVYQGPRELVL 413 (1226)
Q Consensus 403 iv~~G~~~~~~ 413 (1226)
++..|+++++.
T Consensus 217 i~~~g~~~~~~ 227 (362)
T TIGR03258 217 LAAHGEPQALY 227 (362)
T ss_pred EEEEcCHHHHH
Confidence 99999999874
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=364.99 Aligned_cols=215 Identities=27% Similarity=0.378 Sum_probs=187.9
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000913 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1226)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1226)
..++++|++..++ ++.+|+||||+|++|+++||+|||||||||||++|+|... +.+|+|.++|.+
T Consensus 40 ~~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~ 104 (340)
T PRK13536 40 VAIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVP 104 (340)
T ss_pred eeEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEE
Confidence 3588999988873 3569999999999999999999999999999999999876 568999999987
Q ss_pred CCh--hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 000913 934 KKQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1226)
Q Consensus 934 ~~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgG 1011 (1226)
... ...++.+||++|++.+++.+||+|++.|.+.++. .+..+..+.++++++.++|.+..++.+ +.||||
T Consensus 105 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G 176 (340)
T PRK13536 105 VPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGG 176 (340)
T ss_pred CCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHH
Confidence 643 2356779999999999999999999998665442 233444556788999999998888774 469999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 000913 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1226)
Q Consensus 1012 qrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G 1091 (1226)
|||||+||+||+++|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 177 ~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g 254 (340)
T PRK13536 177 MKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEG 254 (340)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEc
Confidence 999999999999999999999999999999999999999999878999999999987 68889999999986 7999999
Q ss_pred CC
Q 000913 1092 PL 1093 (1226)
Q Consensus 1092 ~~ 1093 (1226)
+.
T Consensus 255 ~~ 256 (340)
T PRK13536 255 RP 256 (340)
T ss_pred CH
Confidence 85
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-40 Score=364.81 Aligned_cols=257 Identities=21% Similarity=0.348 Sum_probs=216.6
Q ss_pred hHhhHHHHHHhhhccccChHHHHHHHHHHhhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhh
Q 000913 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1226)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1226)
.|..-.-+|+.++++++++| +++...+..+..++..|.|+||++.+++
T Consensus 502 iQ~nfiDmEnmfdllkee~e-----Vvd~P~a~pl~~~~G~i~fsnvtF~Y~p--------------------------- 549 (790)
T KOG0056|consen 502 IQKNFIDMENMFDLLKEEPE-----VVDLPGAPPLKVTQGKIEFSNVTFAYDP--------------------------- 549 (790)
T ss_pred HHHhhhhHHHHHHHhhcCch-----hhcCCCCCCccccCCeEEEEEeEEecCC---------------------------
Confidence 45666678999999999999 8888888888889999999999999863
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC---ccceEEEecCC
Q 000913 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQH 234 (1226)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~ 234 (1226)
.+++|+||||++.||+.+||+||||+||||+|++|.++++.+ +|.|+++|++++... .|+.||.||||
T Consensus 550 ------~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt~~SLRs~IGVVPQD 620 (790)
T KOG0056|consen 550 ------GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVTQSSLRSSIGVVPQD 620 (790)
T ss_pred ------CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHHHHHHHHhcCcccCc
Confidence 245999999999999999999999999999999999999988 999999999986543 45789999996
Q ss_pred CCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 000913 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1226)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1226)
..+| +.|+..||.|+. ++...|.+.++++... +- -+++++++.++|
T Consensus 621 tvLF-NdTI~yNIryak----~~AsneevyaAAkAA~--------------------------IH---drIl~fPegY~t 666 (790)
T KOG0056|consen 621 TVLF-NDTILYNIRYAK----PSASNEEVYAAAKAAQ--------------------------IH---DRILQFPEGYNT 666 (790)
T ss_pred ceee-cceeeeheeecC----CCCChHHHHHHHHHhh--------------------------HH---HHHhcCchhhhh
Confidence 6555 569999999874 3333333333332211 11 247899999999
Q ss_pred cccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCc
Q 000913 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1226)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1226)
.||+++.+ |||||||||+|||+++..|.+++|||.||+||..+..+|..+|.+++. ++|+|+.. |+..+.-.+|.
T Consensus 667 ~VGERGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvA--HRLSTivnAD~ 741 (790)
T KOG0056|consen 667 RVGERGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVA--HRLSTIVNADL 741 (790)
T ss_pred hhhhcccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEe--eeehheecccE
Confidence 99999997 999999999999999999999999999999999999999999999874 45555443 45677778999
Q ss_pred EEEEcCCeEEEecChhHHHH
Q 000913 395 IILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1226)
|+++++|+|++.|.++|++.
T Consensus 742 ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 742 ILVISNGRIVERGRHEELLK 761 (790)
T ss_pred EEEEeCCeEeecCcHHHHHh
Confidence 99999999999999999875
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=368.92 Aligned_cols=214 Identities=25% Similarity=0.366 Sum_probs=187.4
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|++..++ +.+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~ 69 (356)
T PRK11650 4 LKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVN 69 (356)
T ss_pred EEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECC
Confidence 67888887762 12469999999999999999999999999999999999876 56899999998764
Q ss_pred h-hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 000913 936 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1226)
Q Consensus 936 ~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrq 1014 (1226)
. ...++.+|||+|++.++|.+||+||+.|+...+ ..+..+.+++++++++.++|.++.++.+ ..|||||||
T Consensus 70 ~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~Q 141 (356)
T PRK11650 70 ELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQRQ 141 (356)
T ss_pred CCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHH
Confidence 3 223478999999999999999999999986533 2345566678999999999999888774 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 000913 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1015 rl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
||+|||||+.+|+||+||||||+||+.++..+.+.|+++.++ |.|||++||++. ++.+++|++++|++ |+++..|+.
T Consensus 142 RvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~-G~i~~~g~~ 219 (356)
T PRK11650 142 RVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNG-GVAEQIGTP 219 (356)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999999999999999999999999999998765 999999999986 68899999999985 799999985
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=367.93 Aligned_cols=214 Identities=25% Similarity=0.362 Sum_probs=189.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 478889988774 2468999999999999999999999999999999999876 5689999999876
Q ss_pred Ch-hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 000913 935 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1226)
Q Consensus 935 ~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqr 1013 (1226)
.. ...+|.+|||+|+..++|.+||+||+.|+...+ ..+..+.+++++++++.++|.++.++. +..||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~-----~~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKY-----PGQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCC-----hhhCCHHHH
Confidence 43 234577999999999999999999999986543 234566677899999999999988876 457999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCC
Q 000913 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1226)
Q Consensus 1014 qrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~ 1092 (1226)
|||+|||||+.+|++|+|||||++||+.++..+.+.|+++.++ |.|||++||+++ ++...+|++++|++ |++++.|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~ 218 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGT 218 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999987 68899999999996 79999998
Q ss_pred C
Q 000913 1093 L 1093 (1226)
Q Consensus 1093 ~ 1093 (1226)
.
T Consensus 219 ~ 219 (353)
T TIGR03265 219 P 219 (353)
T ss_pred H
Confidence 5
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=346.54 Aligned_cols=214 Identities=23% Similarity=0.334 Sum_probs=189.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
+.+++++|+++. ...+|+++|+.+++|+.++|+|+||||||||+++|+|... +.+|.|.++|.+..
T Consensus 4 i~~~~l~~~y~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~~ 69 (235)
T COG1122 4 IEAENLSFRYPG------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDTS 69 (235)
T ss_pred EEEEEEEEEcCC------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeecc
Confidence 678899998852 2479999999999999999999999999999999999887 56799999998855
Q ss_pred ----hhhhcceeeEeecCCCCC-CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 000913 936 ----QETFARISGYCEQNDIHS-PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1226)
Q Consensus 936 ----~~~~~~~~gyv~Q~~~~~-~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSg 1010 (1226)
...+++.+|||+|++... -.-||.|.+.|+..-. ..+.++.+++++++++.+++.+++++. +..|||
T Consensus 70 ~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LSG 141 (235)
T COG1122 70 SEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRP-----PFNLSG 141 (235)
T ss_pred chhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCC-----ccccCC
Confidence 345788899999998653 4579999999986433 355667889999999999999998876 467999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 000913 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1226)
Q Consensus 1011 Gqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y 1089 (1226)
||||||+||.+|+.+|++|+|||||||||+.++..+++.++++..+ |+|||++|||.. .+.+++|++++|++ |++++
T Consensus 142 GqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~~ 219 (235)
T COG1122 142 GQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKILA 219 (235)
T ss_pred cceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEee
Confidence 9999999999999999999999999999999999999999999877 689999999987 58888999999996 79999
Q ss_pred eCCC
Q 000913 1090 VGPL 1093 (1226)
Q Consensus 1090 ~G~~ 1093 (1226)
.|++
T Consensus 220 ~g~p 223 (235)
T COG1122 220 DGDP 223 (235)
T ss_pred cCCH
Confidence 9974
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=365.97 Aligned_cols=214 Identities=24% Similarity=0.376 Sum_probs=189.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 588899988773 2468999999999999999999999999999999999877 5689999999876
Q ss_pred Chh-hhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 000913 935 KQE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1226)
Q Consensus 935 ~~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqr 1013 (1226)
... ..+|.+|||+|+..++|.+||+||+.|+...+. .+.++.+++++++++.++|.++.++. +..||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~---~~~~~~~~~v~~~l~~~gl~~~~~r~-----~~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG---VPKEERKQRVKEALELVDLAGFEDRY-----VDQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHH
Confidence 432 235779999999999999999999999865432 34566677899999999999988876 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCC
Q 000913 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1226)
Q Consensus 1014 qrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~ 1092 (1226)
|||+|||||+.+|+||+|||||+|||+.++..+.+.|+++.++ |+|+|++||+++ ++.+++|++++|++ |+++..|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~ 220 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999987 68899999999996 79999998
Q ss_pred C
Q 000913 1093 L 1093 (1226)
Q Consensus 1093 ~ 1093 (1226)
.
T Consensus 221 ~ 221 (351)
T PRK11432 221 P 221 (351)
T ss_pred H
Confidence 5
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=399.25 Aligned_cols=216 Identities=22% Similarity=0.358 Sum_probs=188.0
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000913 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1226)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1226)
..++++|+++.++. +++.+|+|||+.+++||+++|+|+|||||||||++|+|... +.+|+|.++|.+
T Consensus 927 ~~L~I~nLsK~y~~-----------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-----------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEecC-----------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEE
Confidence 46889999887741 23579999999999999999999999999999999999876 568999999988
Q ss_pred CCh--hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 000913 934 KKQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1226)
Q Consensus 934 ~~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgG 1011 (1226)
+.. ...++.+|||+|++.+++.+||+|++.|.+.++. .+.++.+++++++++.++|.+..++.+ ++||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGG 1065 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGG 1065 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHH
Confidence 643 2345679999999999999999999999876653 233445567899999999998888774 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 000913 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1226)
Q Consensus 1012 qrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G 1091 (1226)
|||||+||+||+.+|+||+|||||+|||+.+++.++++|+++. +|+|||+|||+++ ++...+||+++|++ |+++..|
T Consensus 1066 qKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~G 1142 (2272)
T TIGR01257 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSG 1142 (2272)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEec
Confidence 9999999999999999999999999999999999999999995 6999999999986 57778999999986 7899998
Q ss_pred CC
Q 000913 1092 PL 1093 (1226)
Q Consensus 1092 ~~ 1093 (1226)
+.
T Consensus 1143 s~ 1144 (2272)
T TIGR01257 1143 TP 1144 (2272)
T ss_pred CH
Confidence 74
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=367.12 Aligned_cols=205 Identities=27% Similarity=0.373 Sum_probs=177.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-cceEEEecCCCCCCCCCCHH
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1226)
++|+|+|+.+++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..++|.+||+
T Consensus 28 ~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~ 104 (375)
T PRK09452 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVF 104 (375)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHH
Confidence 4899999999999999999999999999999999999998 9999999998866544 47799999999999999999
Q ss_pred HHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 000913 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1226)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1226)
||+.|+.+.++... .+....++++++.+||++..+.. +..|
T Consensus 105 eNi~~~l~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~-----p~~L 145 (375)
T PRK09452 105 ENVAFGLRMQKTPA----------------------------------AEITPRVMEALRMVQLEEFAQRK-----PHQL 145 (375)
T ss_pred HHHHHHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCC-----hhhC
Confidence 99999865432110 01123467789999998877754 4579
Q ss_pred ChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEE
Q 000913 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1226)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1226)
||||||||+|||||+.+|++||||||+++||..++..+.+.|+++.+.. ++++|.++|+..++..++|+|++|++|+++
T Consensus 146 SgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-g~tiI~vTHd~~ea~~laDri~vl~~G~i~ 224 (375)
T PRK09452 146 SGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKL-GITFVFVTHDQEEALTMSDRIVVMRDGRIE 224 (375)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999987643 455566889999999999999999999999
Q ss_pred EecChhHHH
Q 000913 405 YQGPRELVL 413 (1226)
Q Consensus 405 ~~G~~~~~~ 413 (1226)
..|+++++.
T Consensus 225 ~~g~~~~i~ 233 (375)
T PRK09452 225 QDGTPREIY 233 (375)
T ss_pred EEcCHHHHH
Confidence 999998873
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=359.42 Aligned_cols=205 Identities=27% Similarity=0.407 Sum_probs=176.9
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC--ccceEEEecCCCCCCCCCCH
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 243 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1226)
.+|+|||+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.+|||+|++.+++.+||
T Consensus 21 ~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv 97 (306)
T PRK13537 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTV 97 (306)
T ss_pred EEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcH
Confidence 4999999999999999999999999999999999999998 999999999875432 24679999999999999999
Q ss_pred HHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 000913 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1226)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1226)
+||+.|.+++.+... .+....++.+++.++|.+.+++.++ +
T Consensus 98 ~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 138 (306)
T PRK13537 98 RENLLVFGRYFGLSA----------------------------------AAARALVPPLLEFAKLENKADAKVG-----E 138 (306)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCchh-----h
Confidence 999998665543210 0011235678899999988887765 5
Q ss_pred CChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeE
Q 000913 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1226)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1226)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.. . +++|+.++|...++.++||+|++|++|++
T Consensus 139 LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~till~sH~l~e~~~~~d~i~il~~G~i 216 (306)
T PRK13537 139 LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVIEEGRK 216 (306)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999753 3 45566678889999999999999999999
Q ss_pred EEecChhHHHH
Q 000913 404 VYQGPRELVLE 414 (1226)
Q Consensus 404 v~~G~~~~~~~ 414 (1226)
++.|+++++..
T Consensus 217 ~~~g~~~~l~~ 227 (306)
T PRK13537 217 IAEGAPHALIE 227 (306)
T ss_pred EEECCHHHHHh
Confidence 99999998754
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=365.93 Aligned_cols=214 Identities=24% Similarity=0.334 Sum_probs=188.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEE--EEEEEcCc
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT--GNITISGY 932 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~--G~i~i~g~ 932 (1226)
.++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|... +.+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCE
Confidence 478899988874 2469999999999999999999999999999999999876 457 99999998
Q ss_pred cCCh-hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 000913 933 PKKQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1226)
Q Consensus 933 ~~~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgG 1011 (1226)
+... ...++.+|||+|+..+++.+||+||+.|....+ ..+.++.+++++++++.++|.++.++.+ ..||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHH
Confidence 7643 224567999999999999999999999986443 2345566678999999999999888874 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 000913 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1226)
Q Consensus 1012 qrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~--g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y 1089 (1226)
|||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|++ |+++.
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~ 219 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLAA 219 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 999999999999999999999999999999999999999999876 899999999986 68899999999986 79999
Q ss_pred eCCC
Q 000913 1090 VGPL 1093 (1226)
Q Consensus 1090 ~G~~ 1093 (1226)
.|+.
T Consensus 220 ~g~~ 223 (362)
T TIGR03258 220 HGEP 223 (362)
T ss_pred EcCH
Confidence 9985
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=343.36 Aligned_cols=210 Identities=28% Similarity=0.397 Sum_probs=177.3
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh
Q 000913 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1226)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1226)
+++|+++.++ ++.+|+|+||++++|++++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (213)
T cd03259 2 ELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTG 66 (213)
T ss_pred eeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCc
Confidence 4677777763 2469999999999999999999999999999999999876 568999999987643
Q ss_pred -hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 000913 937 -ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1015 (1226)
Q Consensus 937 -~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqr 1015 (1226)
...++.++|++|++.+++.+|++|++.+...... ......++.++++++.+++.+..++.+ ..||||||||
T Consensus 67 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qr 138 (213)
T cd03259 67 VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRG---VPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQR 138 (213)
T ss_pred CchhhccEEEEcCchhhccCCcHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHH
Confidence 1234579999999988889999999988653321 233444566889999999988777663 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 000913 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1226)
Q Consensus 1016 l~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G 1091 (1226)
++||++|+.+|++|+|||||+|||+.++..+++.|+++++ .|+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 9999999999999999999999999999999999999876 4899999999986 47788999999986 6777654
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=361.49 Aligned_cols=202 Identities=27% Similarity=0.379 Sum_probs=177.8
Q ss_pred ceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh--hhhcceeeEeecCCCCCCCCC
Q 000913 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFARISGYCEQNDIHSPFVT 957 (1226)
Q Consensus 880 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lT 957 (1226)
++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 4579999999999999999999999999999999999876 568999999987643 234567999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000913 958 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1037 (1226)
Q Consensus 958 v~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsg 1037 (1226)
|+|++.|.+.++. .+..+.+++++++++.++|.+..++.+ ..|||||||||+||+||+.+|++|||||||+|
T Consensus 83 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999998765542 233445567899999999988877764 56999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 000913 1038 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1038 LD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 208 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTP 208 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999878999999999987 58889999999986 799999975
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=343.22 Aligned_cols=207 Identities=23% Similarity=0.321 Sum_probs=176.0
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++. +.+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehh
Confidence 567888887741 12469999999999999999999999999999999999876 46899999998753
Q ss_pred h------hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 000913 936 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1226)
Q Consensus 936 ~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LS 1009 (1226)
. ..+++.++|++|++.+++.+||+||+.+....+. ...++.+++++++++.+++.+..+..+ ..||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALP-----MQLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 2 1245679999999988899999999998754331 233445567889999999988777664 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 000913 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1226)
Q Consensus 1010 gGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~G 1084 (1226)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++|
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G 214 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRG 214 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999777999999999986 477789999999864
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-38 Score=358.25 Aligned_cols=214 Identities=27% Similarity=0.373 Sum_probs=184.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++ ++.+|+||||++++|+++||+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 477889988763 2469999999999999999999999999999999999876 4689999999875
Q ss_pred Ch--hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 000913 935 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1012 (1226)
Q Consensus 935 ~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGq 1012 (1226)
.. ...++.+||++|++.+++.+||+|++.+.+..+. .+..+..+.++++++.++|.+..++.+ ..|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHH
Confidence 32 2345679999999999999999999987554331 233444556788999999988777764 4699999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCC
Q 000913 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1226)
Q Consensus 1013 rqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~ 1092 (1226)
||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.||++++|++ |++++.|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~ 218 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGR 218 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999987 57889999999986 78999997
Q ss_pred C
Q 000913 1093 L 1093 (1226)
Q Consensus 1093 ~ 1093 (1226)
.
T Consensus 219 ~ 219 (303)
T TIGR01288 219 P 219 (303)
T ss_pred H
Confidence 5
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=318.35 Aligned_cols=200 Identities=27% Similarity=0.397 Sum_probs=174.6
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc------cceEEEecCCCCCC
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNHI 238 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1226)
..+|+||||.|++||++-|+||||||||||||+|.+...|+ .|+|.+||+++..... +|.||+|+|+.-++
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL 91 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLL 91 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeecccc
Confidence 45999999999999999999999999999999999999999 9999999999876542 58999999999999
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 000913 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1226)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1226)
+..||.||++|+.+..|... .+.+.++..+|+..||.+.++.
T Consensus 92 ~~~tvyeNVA~pL~v~G~~~----------------------------------~~i~~rV~~~L~~VgL~~k~~~---- 133 (223)
T COG2884 92 PDRTVYENVALPLRVIGKPP----------------------------------REIRRRVSEVLDLVGLKHKARA---- 133 (223)
T ss_pred ccchHhhhhhhhhhccCCCH----------------------------------HHHHHHHHHHHHHhccchhhhc----
Confidence 99999999999988766422 1234567788999999987764
Q ss_pred cccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEE
Q 000913 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1226)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1226)
.+..|||||+|||+||||++.+|++|+.||||-+||+.++..|++.+.++-+ . +|+|+..+|+..-+..+--+++.|
T Consensus 134 -lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~-GtTVl~ATHd~~lv~~~~~rvl~l 210 (223)
T COG2884 134 -LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-L-GTTVLMATHDLELVNRMRHRVLAL 210 (223)
T ss_pred -CccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-c-CcEEEEEeccHHHHHhccCcEEEE
Confidence 4567999999999999999999999999999999999999999999998754 3 555555788888888888899999
Q ss_pred cCCeEEEecC
Q 000913 399 SDGQIVYQGP 408 (1226)
Q Consensus 399 ~~G~iv~~G~ 408 (1226)
++|+++....
T Consensus 211 ~~Grl~~d~~ 220 (223)
T COG2884 211 EDGRLVRDES 220 (223)
T ss_pred eCCEEEeccc
Confidence 9999987643
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=345.11 Aligned_cols=206 Identities=29% Similarity=0.381 Sum_probs=171.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC------ccceEEEecCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (1226)
++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (235)
T cd03261 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFD 90 (235)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccCC
Confidence 4999999999999999999999999999999999999998 999999999875532 2457999999998999
Q ss_pred CCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 000913 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1226)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1226)
.+||+||+.++......... .+....++.+++.+||++..++.+
T Consensus 91 ~~tv~~~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 134 (235)
T cd03261 91 SLTVFENVAFPLREHTRLSE---------------------------------EEIREIVLEKLEAVGLRGAEDLYP--- 134 (235)
T ss_pred CCcHHHHHHHHHhhccCCCH---------------------------------HHHHHHHHHHHHHcCCchhhcCCh---
Confidence 99999999986532110000 001123566788999987666554
Q ss_pred ccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEc
Q 000913 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1226)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1226)
..|||||||||+||++|+.+|++++|||||+|||+.++..+++.|+++++..+ ++|+.++|+..++.+++|+|++|+
T Consensus 135 --~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tvi~vsH~~~~~~~~~d~v~~l~ 211 (235)
T cd03261 135 --AELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELG-LTSIMVTHDLDTAFAIADRIAVLY 211 (235)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcC-cEEEEEecCHHHHHHhcCEEEEEE
Confidence 46999999999999999999999999999999999999999999998765324 455557788889999999999999
Q ss_pred CCeEEEecChhHHH
Q 000913 400 DGQIVYQGPRELVL 413 (1226)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1226)
+|++++.|+++++.
T Consensus 212 ~G~i~~~g~~~~~~ 225 (235)
T cd03261 212 DGKIVAEGTPEELR 225 (235)
T ss_pred CCeEEEecCHHHHc
Confidence 99999999987653
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-38 Score=363.56 Aligned_cols=216 Identities=25% Similarity=0.387 Sum_probs=186.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 3 L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~ 67 (353)
T PRK10851 3 IEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVS 67 (353)
T ss_pred EEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 67788887763 2469999999999999999999999999999999999876 56899999998764
Q ss_pred h-hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 000913 936 Q-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1226)
Q Consensus 936 ~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqr 1013 (1226)
. ...++.+|||+|++.+++.+||+||+.|....+.. ...+.++.+++++++++.++|.++.++.+ ..||||||
T Consensus 68 ~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq~ 142 (353)
T PRK10851 68 RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQK 142 (353)
T ss_pred CCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 3 22346799999999999999999999997643211 12344556678999999999998888764 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCC
Q 000913 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1226)
Q Consensus 1014 qrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~ 1092 (1226)
|||+|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|+|++||++. ++.+.+|++++|++ |++++.|+
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g~ 220 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAGT 220 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999765 899999999987 68899999999986 79999997
Q ss_pred C
Q 000913 1093 L 1093 (1226)
Q Consensus 1093 ~ 1093 (1226)
.
T Consensus 221 ~ 221 (353)
T PRK10851 221 P 221 (353)
T ss_pred H
Confidence 5
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=361.68 Aligned_cols=209 Identities=28% Similarity=0.390 Sum_probs=177.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-cceEEEecCCCCCCCCCCHH
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1226)
++|+|+|+.|++||+++|+|||||||||||++|+|+++|+ +|+|+++|+++....+ ++.++||+|++.+++.+||+
T Consensus 16 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~ 92 (353)
T PRK10851 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVF 92 (353)
T ss_pred EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHH
Confidence 4999999999999999999999999999999999999998 9999999998865443 36799999999999999999
Q ss_pred HHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 000913 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1226)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1226)
||+.|+.+........ ...+....++.+++.+||++..|.. +..|
T Consensus 93 eni~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~L 137 (353)
T PRK10851 93 DNIAFGLTVLPRRERP------------------------------NAAAIKAKVTQLLEMVQLAHLADRY-----PAQL 137 (353)
T ss_pred HHHHhhhhhcccccCC------------------------------CHHHHHHHHHHHHHHcCCchhhhCC-----hhhC
Confidence 9999986532100000 0001123467789999998776654 4579
Q ss_pred ChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEE
Q 000913 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1226)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1226)
||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ..+.+++.++|+..++..++|+|++|++|+++
T Consensus 138 SgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~-~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~ 216 (353)
T PRK10851 138 SGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHE-ELKFTSVFVTHDQEEAMEVADRVVVMSQGNIE 216 (353)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999865 33445666889999999999999999999999
Q ss_pred EecChhHHH
Q 000913 405 YQGPRELVL 413 (1226)
Q Consensus 405 ~~G~~~~~~ 413 (1226)
+.|+++++.
T Consensus 217 ~~g~~~~i~ 225 (353)
T PRK10851 217 QAGTPDQVW 225 (353)
T ss_pred EEcCHHHHH
Confidence 999999874
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-38 Score=339.76 Aligned_cols=209 Identities=24% Similarity=0.417 Sum_probs=178.2
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh
Q 000913 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1226)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1226)
+++|+++.++ ++.+|+|+|+++++|++++|+|||||||||||++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (210)
T cd03269 2 EVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI 66 (210)
T ss_pred EEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH
Confidence 5677877663 2469999999999999999999999999999999999876 468999999987653
Q ss_pred hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 000913 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRL 1016 (1226)
Q Consensus 937 ~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl 1016 (1226)
..++.++|++|++.+++.+||+||+.+....+. ....+.++.++++++.+++.+..+.. +..||||||||+
T Consensus 67 -~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl 137 (210)
T cd03269 67 -AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKR-----VEELSKGNQQKV 137 (210)
T ss_pred -HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCc-----HhhCCHHHHHHH
Confidence 345679999999988889999999988654432 23334456788999999998777665 357999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 000913 1017 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1226)
Q Consensus 1017 ~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G 1091 (1226)
+||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 138 ~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999998877899999999986 47788999999986 6777654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=341.79 Aligned_cols=215 Identities=24% Similarity=0.362 Sum_probs=180.1
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh
Q 000913 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1226)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1226)
+++|+++.++.. ...+.+|+|+|++|++|++++|+||||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 70 (220)
T cd03293 2 EVRNVSKTYGGG---------GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTG 70 (220)
T ss_pred eEEEEEEEcCCC---------CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcc
Confidence 467777766411 011469999999999999999999999999999999999876 468999999987642
Q ss_pred hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 000913 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRL 1016 (1226)
Q Consensus 937 ~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl 1016 (1226)
.++.++|++|++.+++.+||+||+.+....+. ...+...+.++++++.++|.+..++.+ ..||||||||+
T Consensus 71 --~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl 140 (220)
T cd03293 71 --PGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRV 140 (220)
T ss_pred --ccCcEEEEecccccccCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHH
Confidence 35679999999988888999999988654332 233444567889999999987777653 57999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEec-CcEEEEeCCC
Q 000913 1017 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPL 1093 (1226)
Q Consensus 1017 ~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~H~p~~~i~~~~D~v~ll~~-Gg~~~y~G~~ 1093 (1226)
+||++|+.+|++|+|||||+|||+.++..+++.|+++.+ .|+|||+++|+++ ++.+.+|++++|++ .|+++..++.
T Consensus 141 ~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 141 ALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999999999999999999864 5899999999986 47788999999985 4788887764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-38 Score=361.76 Aligned_cols=208 Identities=21% Similarity=0.308 Sum_probs=179.1
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-------cceEEEecCCCC
Q 000913 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDN 236 (1226)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~ 236 (1226)
.+.+|+|+||.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|++.
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 345999999999999999999999999999999999999998 9999999999876543 468999999999
Q ss_pred CCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccc
Q 000913 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (1226)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1226)
+++.+||+||+.|+.+..+... ++....+.++++.+||++..++.+
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~vgL~~~~~~~p 127 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWPE----------------------------------QERKEKALELLKLVGLEEYEHRYP 127 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCchhhhCCh
Confidence 9999999999999876543210 011234567889999987766554
Q ss_pred cccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEE
Q 000913 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1226)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1226)
..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+..+ .+|+.++|+..++..++|+|+
T Consensus 128 -----~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~-~Tii~vTHd~~ea~~~~drI~ 201 (363)
T TIGR01186 128 -----DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ-KTIVFITHDLDEAIRIGDRIV 201 (363)
T ss_pred -----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEE
Confidence 46999999999999999999999999999999999999999999998765334 455568889999999999999
Q ss_pred EEcCCeEEEecChhHHHH
Q 000913 397 LLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 397 lL~~G~iv~~G~~~~~~~ 414 (1226)
+|++|+++..|+++++..
T Consensus 202 vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 202 IMKAGEIVQVGTPDEILR 219 (363)
T ss_pred EEeCCEEEeeCCHHHHHh
Confidence 999999999999998753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=329.24 Aligned_cols=205 Identities=27% Similarity=0.333 Sum_probs=177.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC----ccceEEEecCCC--CCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV----PQRTAAYISQHD--NHIG 239 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~----~~~~~~yv~Q~d--~~~~ 239 (1226)
++|+|||+++.+||.++|+|+||||||||.++|+|..+|+ +|+|+++|.+..... ..+.+-+|+||+ .+-|
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP 97 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNP 97 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCc
Confidence 6999999999999999999999999999999999999998 999999998765542 347899999996 5789
Q ss_pred CCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 000913 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1226)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1226)
..||++.|.-+.+..+... ...++.++|+.+||+... -++
T Consensus 98 ~~tv~~~l~Epl~~~~~~~------------------------------------~~~~i~~~L~~VgL~~~~----l~R 137 (252)
T COG1124 98 RRTVGRILSEPLRPHGLSK------------------------------------SQQRIAELLDQVGLPPSF----LDR 137 (252)
T ss_pred chhHHHHHhhhhccCCccH------------------------------------HHHHHHHHHHHcCCCHHH----Hhc
Confidence 9999999987665432211 112256789999998632 246
Q ss_pred ccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEc
Q 000913 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1226)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1226)
.+.+|||||||||+|||||+.+|++|++|||||+||++...+|++.|.++.+ ..+.+++.++|+..-+..+||||+||+
T Consensus 138 ~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~-~~~lt~l~IsHdl~~v~~~cdRi~Vm~ 216 (252)
T COG1124 138 RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKK-ERGLTYLFISHDLALVEHMCDRIAVMD 216 (252)
T ss_pred CchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHH-hcCceEEEEeCcHHHHHHHhhheeeee
Confidence 6778999999999999999999999999999999999999999999998865 556677779999999999999999999
Q ss_pred CCeEEEecChhHHHH
Q 000913 400 DGQIVYQGPRELVLE 414 (1226)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1226)
+|++++.++.+++..
T Consensus 217 ~G~ivE~~~~~~l~~ 231 (252)
T COG1124 217 NGQIVEIGPTEELLS 231 (252)
T ss_pred CCeEEEeechhhhhc
Confidence 999999999998864
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=393.83 Aligned_cols=255 Identities=27% Similarity=0.430 Sum_probs=205.3
Q ss_pred hHhhHHHHHHhhhccccChHHHHHHHHHHhhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhh
Q 000913 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1226)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1226)
.+.+...+||+.+++++.++ +++.... ...+..+++|+|+++.++.
T Consensus 295 ~~~~~~a~~ri~~~l~~~~~-----~~~~~~~--~~~~~~~I~f~~vsf~y~~--------------------------- 340 (567)
T COG1132 295 LQRASAAAERLFELLDEEPE-----VEDPPDP--LKDTIGSIEFENVSFSYPG--------------------------- 340 (567)
T ss_pred HHHHHHHHHHHHHHHcCCcc-----ccCCCCC--CCCCCCeEEEEEEEEEcCC---------------------------
Confidence 56788889999999988665 3332222 3445677999999999842
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCC
Q 000913 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1226)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1226)
++++|+|+|+.++|||.+||+||||||||||+++|.|+++|+ +|+|.+||+++++... ++.++||+|+
T Consensus 341 ------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd 411 (567)
T COG1132 341 ------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQD 411 (567)
T ss_pred ------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEccc
Confidence 234999999999999999999999999999999999999998 9999999999887764 5789999997
Q ss_pred CCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 000913 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1226)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1226)
+.+|. .||+|||.++.. ....+.+.++++.... ... +..|++++||
T Consensus 412 ~~LF~-~TI~~NI~~g~~----~at~eei~~a~k~a~~---------------------------~d~--I~~lp~g~dt 457 (567)
T COG1132 412 PLLFS-GTIRENIALGRP----DATDEEIEEALKLANA---------------------------HEF--IANLPDGYDT 457 (567)
T ss_pred ceeec-ccHHHHHhcCCC----CCCHHHHHHHHHHhCh---------------------------HHH--HHhCcccccc
Confidence 66665 899999999752 1223444444443211 111 3346888999
Q ss_pred cccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCc
Q 000913 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1226)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1226)
.||+++. .||||||||++||||++.+|+||+||||||+||+.+...|.+.++++. .++|+++ +.|.. .+...+|+
T Consensus 458 ~vge~G~-~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~ii-IaHRl-sti~~aD~ 532 (567)
T COG1132 458 IVGERGV-NLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLI-IAHRL-STIKNADR 532 (567)
T ss_pred eecCCCc-cCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEE-EeccH-hHHHhCCE
Confidence 9997665 599999999999999999999999999999999999999999999765 3457776 55544 55555999
Q ss_pred EEEEcCCeEEEecChhHHHH
Q 000913 395 IILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1226)
|++|++|++++.|++++++.
T Consensus 533 IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 533 IIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred EEEEECCEEEEecCHHHHHH
Confidence 99999999999999999875
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=393.59 Aligned_cols=255 Identities=23% Similarity=0.338 Sum_probs=196.2
Q ss_pred hHhhHHHHHHhhhccccChHHHHHHHHHHhhhcCCCC-CcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhh
Q 000913 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDL-PKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLR 156 (1226)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 156 (1226)
.+++....+|+.++++.+++. ........+. ...+|+|+||++.+..
T Consensus 314 ~~~~~~~~~ri~~~l~~~~~~------~~~~~~~~~~~~~~~i~~~~vsf~~~~-------------------------- 361 (588)
T PRK11174 314 KAQAVGAAESLVTFLETPLAH------PQQGEKELASNDPVTIEAEDLEILSPD-------------------------- 361 (588)
T ss_pred HHHHHHHHHHHHHHHcCCCcc------cCCCccccCCCCCceEEEEeeEEeccC--------------------------
Confidence 467788888988888765431 0000111111 1347999999986521
Q ss_pred hcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecC
Q 000913 157 IIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQ 233 (1226)
Q Consensus 157 ~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q 233 (1226)
.+++|+|+|++++||+.++|+||||||||||+++|+|++ |+ +|+|++||+++++... ++.++||+|
T Consensus 362 -------~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q 430 (588)
T PRK11174 362 -------GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQ 430 (588)
T ss_pred -------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecC
Confidence 124999999999999999999999999999999999999 87 9999999999887754 478999999
Q ss_pred CCCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccc
Q 000913 234 HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (1226)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1226)
++.+| +.||+|||.++.. ....+.+.++++... .+.. +-.|++..|
T Consensus 431 ~~~LF-~~TI~eNI~~g~~----~~~~eei~~al~~a~---------------------------l~~~--i~~lp~G~d 476 (588)
T PRK11174 431 NPQLP-HGTLRDNVLLGNP----DASDEQLQQALENAW---------------------------VSEF--LPLLPQGLD 476 (588)
T ss_pred CCcCC-CcCHHHHhhcCCC----CCCHHHHHHHHHHhC---------------------------HHHH--HHhcccccc
Confidence 77555 5799999998631 122233333322211 1111 234778889
Q ss_pred ccccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcC
Q 000913 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (1226)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 393 (1226)
|.||+++. .||||||||++|||||+++|+||+||||||+||+.++..|.+.|+++. .++|+|++.|++ ++...||
T Consensus 477 T~vge~G~-~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl--~~i~~aD 551 (588)
T PRK11174 477 TPIGDQAA-GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQL--EDLAQWD 551 (588)
T ss_pred cccccCCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecCh--HHHHhCC
Confidence 99998765 599999999999999999999999999999999999999999998764 456666654443 6678899
Q ss_pred cEEEEcCCeEEEecChhHHHH
Q 000913 394 DIILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 394 ~iilL~~G~iv~~G~~~~~~~ 414 (1226)
+|++|++|++++.|+++++.+
T Consensus 552 ~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 552 QIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred EEEEEeCCeEeecCCHHHHHh
Confidence 999999999999999999864
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=340.99 Aligned_cols=213 Identities=29% Similarity=0.380 Sum_probs=181.0
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++ .+.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 65 (220)
T cd03265 1 IEVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVV 65 (220)
T ss_pred CEEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecC
Confidence 35678877763 2469999999999999999999999999999999999866 46899999997653
Q ss_pred h--hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 000913 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1226)
Q Consensus 936 ~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqr 1013 (1226)
. ...++.++|++|++.+++.+||+|++.+....+. ...++.++.++++++.++|.+..++.+ ..||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 137 (220)
T cd03265 66 REPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMR 137 (220)
T ss_pred cChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHH
Confidence 2 2345679999999988899999999998754432 233344567889999999988777664 56999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCC
Q 000913 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1226)
Q Consensus 1014 qrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~ 1092 (1226)
||++||+||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |+++..|+
T Consensus 138 qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 215 (220)
T cd03265 138 RRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGT 215 (220)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCC
Confidence 9999999999999999999999999999999999999999876 899999999987 57788999999986 68888876
Q ss_pred C
Q 000913 1093 L 1093 (1226)
Q Consensus 1093 ~ 1093 (1226)
.
T Consensus 216 ~ 216 (220)
T cd03265 216 P 216 (220)
T ss_pred h
Confidence 4
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=324.00 Aligned_cols=205 Identities=26% Similarity=0.365 Sum_probs=183.1
Q ss_pred CceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCChhh----hcceeeEeecCCCCCC
Q 000913 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET----FARISGYCEQNDIHSP 954 (1226)
Q Consensus 879 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~----~~~~~gyv~Q~~~~~~ 954 (1226)
+++.++++||+.+++||++||+|||||||||.+.++.|... +.+|.|.+||.+++... .+..+||+||++..|.
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr 92 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFR 92 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCChHHHhhcCcccccccchHhh
Confidence 46789999999999999999999999999999999999877 56899999999876532 2345899999999999
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000913 955 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1034 (1226)
Q Consensus 955 ~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEP 1034 (1226)
.+||+||++.....+.. +....+++++++++|+.+++.++++... ..||||||+|+.|||||+.+|+.|+||||
T Consensus 93 ~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~fiLLDEP 166 (243)
T COG1137 93 KLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPKFILLDEP 166 (243)
T ss_pred cCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCCEEEecCC
Confidence 99999999976666542 2334567777899999999999999873 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 000913 1035 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1035 TsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
++|+||.+-..|.++++.+.+.|.-|++|-|... |....|||.+++.+ |+++..|.+
T Consensus 167 FAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p 223 (243)
T COG1137 167 FAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSP 223 (243)
T ss_pred ccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCH
Confidence 9999999999999999999999999999999987 78999999999997 799999986
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=340.98 Aligned_cols=207 Identities=29% Similarity=0.420 Sum_probs=180.1
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCC----CCCccceEEEecCCC-CCCC
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD----EFVPQRTAAYISQHD-NHIG 239 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~----~~~~~~~~~yv~Q~d-~~~~ 239 (1226)
..+|+|+|+.+++|+.++|+||||||||||+++|+|++.|+ +|+|.++|.+.. ....++.+|||+|++ ..+.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 45999999999999999999999999999999999999998 999999999865 223468899999995 5677
Q ss_pred CCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 000913 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1226)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1226)
.-||.|.++|+....+... ++...+++.+++.+||.+.++.
T Consensus 94 ~~tV~~evafg~~n~g~~~----------------------------------~e~~~rv~~~l~~vgl~~~~~r----- 134 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPR----------------------------------EEIEERVAEALELVGLEELLDR----- 134 (235)
T ss_pred cCcHHHHHhhchhhcCCCH----------------------------------HHHHHHHHHHHHHcCchhhccC-----
Confidence 8899999999987765421 1133567889999999988764
Q ss_pred ccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEc
Q 000913 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1226)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1226)
.+..|||||||||+||.+|+.+|++|+|||||+|||+..+.++++.++++.. .++.+||.++|+...+..++|++++|+
T Consensus 135 ~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~-~~~~tii~~tHd~~~~~~~ad~v~vl~ 213 (235)
T COG1122 135 PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKE-EGGKTIIIVTHDLELVLEYADRVVVLD 213 (235)
T ss_pred CccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCCeEEEEeCcHHHHHhhCCEEEEEE
Confidence 4557999999999999999999999999999999999999999999999876 444555668899999999999999999
Q ss_pred CCeEEEecChhHHHH
Q 000913 400 DGQIVYQGPRELVLE 414 (1226)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1226)
+|+++++|++.++.+
T Consensus 214 ~G~i~~~g~p~~i~~ 228 (235)
T COG1122 214 DGKILADGDPAEIFN 228 (235)
T ss_pred CCEEeecCCHHHHhh
Confidence 999999999877654
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=363.02 Aligned_cols=214 Identities=22% Similarity=0.328 Sum_probs=188.1
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 488999988874 2468999999999999999999999999999999999876 5689999999876
Q ss_pred Ch-hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 000913 935 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1226)
Q Consensus 935 ~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqr 1013 (1226)
.. ...+|.+|||+|++.++|.+||+||+.|+...+ ..+..+.+++++++++.++|.++.++.+ ..||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 43 223577999999999999999999999975433 2344555677899999999999888874 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCC
Q 000913 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1226)
Q Consensus 1014 qrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~ 1092 (1226)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||++||++. ++..++|++++|++ |+++..|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 228 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGT 228 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998764 999999999986 68899999999986 79999997
Q ss_pred C
Q 000913 1093 L 1093 (1226)
Q Consensus 1093 ~ 1093 (1226)
.
T Consensus 229 ~ 229 (375)
T PRK09452 229 P 229 (375)
T ss_pred H
Confidence 5
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=361.80 Aligned_cols=205 Identities=24% Similarity=0.330 Sum_probs=177.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-cceEEEecCCCCCCCCCCHH
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1226)
.+|+|+|+.+++|++++|+|||||||||||++|+|+.+|+ +|+|.++|.++....+ ++.++||+|+..+|+.+||+
T Consensus 33 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~ 109 (377)
T PRK11607 33 HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVE 109 (377)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHH
Confidence 4899999999999999999999999999999999999998 9999999998865443 47899999999999999999
Q ss_pred HHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 000913 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1226)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1226)
||+.|+.+.++... .+....++.+++.+||.+..+.. +.+|
T Consensus 110 eNi~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~l~L~~~~~~~-----~~~L 150 (377)
T PRK11607 110 QNIAFGLKQDKLPK----------------------------------AEIASRVNEMLGLVHMQEFAKRK-----PHQL 150 (377)
T ss_pred HHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCC-----hhhC
Confidence 99999875432110 01123467789999998766644 4579
Q ss_pred ChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEE
Q 000913 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1226)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1226)
||||||||+|||||+.+|++|||||||++||..++..+.+.|+++.+..+ .++|.++|+..++..++|+|++|++|+++
T Consensus 151 SgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tii~vTHd~~ea~~laDri~vl~~G~i~ 229 (377)
T PRK11607 151 SGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVG-VTCVMVTHDQEEAMTMAGRIAIMNRGKFV 229 (377)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhCCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999988765444 55566788999999999999999999999
Q ss_pred EecChhHHH
Q 000913 405 YQGPRELVL 413 (1226)
Q Consensus 405 ~~G~~~~~~ 413 (1226)
..|+++++.
T Consensus 230 ~~g~~~~~~ 238 (377)
T PRK11607 230 QIGEPEEIY 238 (377)
T ss_pred EEcCHHHHH
Confidence 999999874
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=344.21 Aligned_cols=215 Identities=26% Similarity=0.354 Sum_probs=180.1
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh
Q 000913 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1226)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1226)
+++|+++.++ ++.+|+|+|+++++|+++||+|||||||||||++|+|... +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (236)
T cd03219 2 EVRGLTKRFG-------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITG 66 (236)
T ss_pred eeeeeEEEEC-------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCC
Confidence 4677777663 2469999999999999999999999999999999999876 468999999987643
Q ss_pred h---h-hcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCC-------CCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 000913 937 E---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPE-------VDSETRKMFIDEVMELVELNPLRQSLVGLPGV 1005 (1226)
Q Consensus 937 ~---~-~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~-------~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~ 1005 (1226)
. . .++.++|++|++.+++.+||+|++.+....+.... ....+..+.++++++.+++.+..++. +
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 141 (236)
T cd03219 67 LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP-----A 141 (236)
T ss_pred CCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-----h
Confidence 1 2 23468999999999999999999988754332110 11234456788999999998777665 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 000913 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1226)
Q Consensus 1006 ~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg 1085 (1226)
..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.+|++++|++ |
T Consensus 142 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G 219 (236)
T cd03219 142 GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ-G 219 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-C
Confidence 579999999999999999999999999999999999999999999999878999999999987 57788999999986 6
Q ss_pred EEEEeCCC
Q 000913 1086 QEIYVGPL 1093 (1226)
Q Consensus 1086 ~~~y~G~~ 1093 (1226)
++++.|+.
T Consensus 220 ~i~~~~~~ 227 (236)
T cd03219 220 RVIAEGTP 227 (236)
T ss_pred EEEeecCH
Confidence 88888864
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=360.75 Aligned_cols=217 Identities=22% Similarity=0.298 Sum_probs=185.0
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|++++++.. ..++.+|+|+||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 5788998887421 013579999999999999999999999999999999999876 56899999998764
Q ss_pred h------hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 000913 936 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1226)
Q Consensus 936 ~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LS 1009 (1226)
. ..+++.+||++|++.+++.+||+||+.+....+. .+.++.+++++++++.++|.+..++.+ ..||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAG---TPKAEIKARVTELLELVGLSDKADRYP-----AQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 2 1235679999999999999999999998754432 234455567899999999988777663 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 000913 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1226)
Q Consensus 1010 gGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~ 1088 (1226)
|||||||+||++|+.+|+||||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|++ |+++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~ 220 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLV 220 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 899999999987 57788999999986 7999
Q ss_pred EeCCC
Q 000913 1089 YVGPL 1093 (1226)
Q Consensus 1089 y~G~~ 1093 (1226)
+.|+.
T Consensus 221 ~~g~~ 225 (343)
T PRK11153 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 99975
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=338.90 Aligned_cols=210 Identities=26% Similarity=0.389 Sum_probs=177.9
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh
Q 000913 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1226)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1226)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~ 66 (213)
T cd03301 2 ELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTD 66 (213)
T ss_pred EEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCc
Confidence 5678877763 2469999999999999999999999999999999999876 468999999987643
Q ss_pred h-hhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 000913 937 E-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1015 (1226)
Q Consensus 937 ~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqr 1015 (1226)
. ..++.++|++|++.+++..|++||+.+....+. ...++.++.++++++.+++.+..+..+ ..||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 138 (213)
T cd03301 67 LPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRK---VPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQR 138 (213)
T ss_pred CCcccceEEEEecChhhccCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHH
Confidence 1 223569999999988888999999988654321 233444567889999999988777664 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 000913 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1226)
Q Consensus 1016 l~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G 1091 (1226)
++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 139 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999764 899999999986 57788999999986 6888765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=314.62 Aligned_cols=195 Identities=25% Similarity=0.347 Sum_probs=171.9
Q ss_pred ccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCChh-hhcceeeEeecCCCCCCCCCHHHHHHHH
Q 000913 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTIYESLLFS 965 (1226)
Q Consensus 887 vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~ 965 (1226)
.++.|.+||++||+||||||||||||+|+|... +.+|.|+|||.+.... ...|-++.++|+..+|..+||.+|+-++
T Consensus 18 fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLG 95 (231)
T COG3840 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLG 95 (231)
T ss_pred EEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhccc
Confidence 567899999999999999999999999999887 5689999999886543 3556789999999999999999999886
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 000913 966 AWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045 (1226)
Q Consensus 966 ~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~ 1045 (1226)
..-.+ ..+ .+.+++++.++..+||.++.+++. ..|||||||||++||+|+++-+||+||||+|.|||.-+..
T Consensus 96 l~P~L--kL~-a~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~e 167 (231)
T COG3840 96 LSPGL--KLN-AEQREKVEAAAAQVGLAGFLKRLP-----GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE 167 (231)
T ss_pred CCccc--ccC-HHHHHHHHHHHHHhChhhHhhhCc-----cccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHH
Confidence 43222 122 344567899999999999999884 4699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 000913 1046 VMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1046 i~~~l~~~~~-~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
+..++.++++ ++.|++++||+|+ ++....|+++++++ |++.|.|+.
T Consensus 168 Ml~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~ 214 (231)
T COG3840 168 MLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214 (231)
T ss_pred HHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccH
Confidence 9999999975 5899999999998 79999999999997 799999985
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=312.79 Aligned_cols=201 Identities=24% Similarity=0.380 Sum_probs=173.6
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-cceEEEecCCCCCCCCCCHHHHHH
Q 000913 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRETLA 248 (1226)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1226)
..++.|++||++||+||||||||||||+|+|+..|. +|+|.+||++.....| +|-++.++|+.++|..+||.+|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 477899999999999999999999999999999998 9999999999887665 478999999999999999999999
Q ss_pred HHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhH
Q 000913 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1226)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1226)
++.. ++-+. ..+.+..++.++..+||..+.+.. +.+|||||
T Consensus 94 LGl~---P~LkL-------------------------------~a~~r~~v~~aa~~vGl~~~~~RL-----P~~LSGGq 134 (231)
T COG3840 94 LGLS---PGLKL-------------------------------NAEQREKVEAAAAQVGLAGFLKRL-----PGELSGGQ 134 (231)
T ss_pred ccCC---ccccc-------------------------------CHHHHHHHHHHHHHhChhhHhhhC-----ccccCchH
Confidence 8753 21110 011223567788999999887755 45699999
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEEEecC
Q 000913 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (1226)
Q Consensus 329 rqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~ 408 (1226)
||||++||+|+++-+|++||||+|+||+.-+.+....+.+++.+.+.|+++ ++|+.+++..++|+++++++|+|.++|+
T Consensus 135 RQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~Tllm-VTH~~~Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLM-VTHHPEDAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEE-EeCCHHHHHHhhhceEEEeCCEEEeecc
Confidence 999999999999999999999999999999999999999998866666666 5566689999999999999999999999
Q ss_pred hhHHH
Q 000913 409 RELVL 413 (1226)
Q Consensus 409 ~~~~~ 413 (1226)
.++..
T Consensus 214 ~~~~~ 218 (231)
T COG3840 214 TQELL 218 (231)
T ss_pred HHHHh
Confidence 88764
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=361.43 Aligned_cols=205 Identities=26% Similarity=0.387 Sum_probs=175.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-cceEEEecCCCCCCCCCCHH
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1226)
.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++||+|+..+++.+||+
T Consensus 17 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~ 93 (369)
T PRK11000 17 VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVA 93 (369)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHH
Confidence 4999999999999999999999999999999999999998 9999999998765433 36799999999999999999
Q ss_pred HHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 000913 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1226)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1226)
||+.|+.+..+... .+....++.+++.+||++..+..+ ..|
T Consensus 94 eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~lgL~~~~~~~~-----~~L 134 (369)
T PRK11000 94 ENMSFGLKLAGAKK----------------------------------EEINQRVNQVAEVLQLAHLLDRKP-----KAL 134 (369)
T ss_pred HHHHhHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcCCh-----hhC
Confidence 99999865432110 011224567899999987776554 469
Q ss_pred ChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEE
Q 000913 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1226)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1226)
||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+.. ++++|.++|+..++..++|+|++|++|+++
T Consensus 135 SgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~ 213 (369)
T PRK11000 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRVA 213 (369)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHh-CCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999876533 445556788889999999999999999999
Q ss_pred EecChhHHH
Q 000913 405 YQGPRELVL 413 (1226)
Q Consensus 405 ~~G~~~~~~ 413 (1226)
..|+++++.
T Consensus 214 ~~g~~~~i~ 222 (369)
T PRK11000 214 QVGKPLELY 222 (369)
T ss_pred EEcCHHHHH
Confidence 999998874
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=339.96 Aligned_cols=215 Identities=27% Similarity=0.409 Sum_probs=180.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++... ....+|+|+|+++++|++++|+|+|||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~~---------~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDVK---------KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCCC---------ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcc
Confidence 56788887764210 11269999999999999999999999999999999999876 46899999998764
Q ss_pred h--hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 000913 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1226)
Q Consensus 936 ~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqr 1013 (1226)
. ..+++.++|++|++.+++.+||+||+.+....+. ....+..+.++++++.+++.+..++.+ ..||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYG---LKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHH
Confidence 3 2345679999999988888999999988654331 234455667899999999988777663 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 000913 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1226)
Q Consensus 1014 qrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G 1091 (1226)
||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 9999999999999999999999999999999999999999777999999999986 57788999999986 6777654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=354.64 Aligned_cols=212 Identities=23% Similarity=0.364 Sum_probs=184.9
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|++++++ ++.+|+|+||++++||++||+|||||||||||++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 67788887763 3569999999999999999999999999999999999876 56899999998764
Q ss_pred h--hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 000913 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1226)
Q Consensus 936 ~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqr 1013 (1226)
. ...++.+||++|++.+++.+||.|++.|.+.++. .+.++..++++++++.++|.+..++.+ +.||||||
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 139 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYR 139 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHH
Confidence 3 2345679999999999999999999998775542 233444567899999999998888774 56999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 000913 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1014 qrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
|||+||+||+++|++|||||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 140 qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (301)
T TIGR03522 140 QRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKKL 216 (301)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999865 799999999987 68889999999986 799999985
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=342.45 Aligned_cols=212 Identities=26% Similarity=0.366 Sum_probs=180.1
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh
Q 000913 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1226)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1226)
+++|+++.++ .+.+|+|+||++++|++++|+|||||||||||++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 66 (232)
T cd03218 2 RAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITK 66 (232)
T ss_pred eEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 5677877763 2469999999999999999999999999999999999876 468999999987532
Q ss_pred ---hh-hcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 000913 937 ---ET-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1012 (1226)
Q Consensus 937 ---~~-~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGq 1012 (1226)
.. .++.++|++|++.+++.+||+||+.+....+. ....+..+.++++++.+++.+..+.. +..|||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~ 138 (232)
T cd03218 67 LPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSK-----ASSLSGGE 138 (232)
T ss_pred CCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHH
Confidence 12 23468999999999999999999988643322 22334456688999999998777665 35799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCC
Q 000913 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1226)
Q Consensus 1013 rqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~ 1092 (1226)
|||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|+++ ++.+.+|++++|++ |++++.|+
T Consensus 139 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 216 (232)
T cd03218 139 RRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEGT 216 (232)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEeC
Confidence 99999999999999999999999999999999999999999877999999999987 58889999999986 78888887
Q ss_pred C
Q 000913 1093 L 1093 (1226)
Q Consensus 1093 ~ 1093 (1226)
.
T Consensus 217 ~ 217 (232)
T cd03218 217 P 217 (232)
T ss_pred H
Confidence 4
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=342.81 Aligned_cols=216 Identities=27% Similarity=0.392 Sum_probs=181.1
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++ .+.+|+|||+++++|++++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (239)
T cd03296 3 IEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDAT 67 (239)
T ss_pred EEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 67888888774 2469999999999999999999999999999999999876 46899999998754
Q ss_pred hh-hhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 000913 936 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1226)
Q Consensus 936 ~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqr 1013 (1226)
.. ..++.++|++|++.+++.+||+||+.+....+.. ......+..+.++++++.++|.+..+..+ ..||||||
T Consensus 68 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (239)
T cd03296 68 DVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQR 142 (239)
T ss_pred cCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHH
Confidence 32 2245699999999888889999999886543211 00122334456888999999987777653 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCC
Q 000913 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1226)
Q Consensus 1014 qrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~ 1092 (1226)
|||+||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.|+
T Consensus 143 qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 220 (239)
T cd03296 143 QRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVGT 220 (239)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEecC
Confidence 9999999999999999999999999999999999999999765 899999999986 47788999999986 78998887
Q ss_pred C
Q 000913 1093 L 1093 (1226)
Q Consensus 1093 ~ 1093 (1226)
.
T Consensus 221 ~ 221 (239)
T cd03296 221 P 221 (239)
T ss_pred H
Confidence 4
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=362.65 Aligned_cols=214 Identities=25% Similarity=0.374 Sum_probs=185.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.+. ++.+|+|+|+++++|++++|+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 377888888763 2469999999999999999999999999999999999876 5689999999876
Q ss_pred Ch-hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 000913 935 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1226)
Q Consensus 935 ~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqr 1013 (1226)
.. ...++.+|||+|+..+++.+||+||+.|....+. .+.++.+++++++++.++|.+..++.+ ..||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 43 1234679999999999999999999998764432 234455677899999999988877764 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCC
Q 000913 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1226)
Q Consensus 1014 qrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~ 1092 (1226)
|||+|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |.|||++||+++ ++.+.+|++++|++ |+++..|+
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~ 217 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998764 899999999986 58889999999986 79999997
Q ss_pred C
Q 000913 1093 L 1093 (1226)
Q Consensus 1093 ~ 1093 (1226)
.
T Consensus 218 ~ 218 (369)
T PRK11000 218 P 218 (369)
T ss_pred H
Confidence 5
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=363.98 Aligned_cols=218 Identities=26% Similarity=0.362 Sum_probs=185.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++ ++.+|+|+||.+++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 3 ~L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 377888888763 3579999999999999999999999999999999999876 5689999999876
Q ss_pred Ch---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 000913 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1226)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSg 1010 (1226)
.. ..+++.+|||+|++.+++.+||+|++.++...+... ....+..+++++++++.+++.+..++.+ ..|||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSg 142 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSG 142 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 43 345678999999999888999999998864321100 1012334567899999999998888764 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 000913 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1226)
Q Consensus 1011 Gqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~ 1090 (1226)
|||||+.|||+|+++|+||||||||+|||+.++..++++|++++++|+|||+++|+++ ++.+.||++++|++ |++++.
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~ 220 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAA 220 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999987 58899999999986 789999
Q ss_pred CCCC
Q 000913 1091 GPLG 1094 (1226)
Q Consensus 1091 G~~~ 1094 (1226)
|+..
T Consensus 221 G~~~ 224 (402)
T PRK09536 221 GPPA 224 (402)
T ss_pred cCHH
Confidence 9853
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-38 Score=328.71 Aligned_cols=217 Identities=26% Similarity=0.347 Sum_probs=180.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++.+|++..++.... ...+|+||||++.+||++||+|+||||||||.++|+|... +.+|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~~~---------~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGGKF---------AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCCcc---------hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCccc
Confidence 3677888877753221 1259999999999999999999999999999999999877 5689999999765
Q ss_pred Chh----hhcceeeEeecCCC--CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCC
Q 000913 935 KQE----TFARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSG 1007 (1226)
Q Consensus 935 ~~~----~~~~~~gyv~Q~~~--~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~ 1007 (1226)
... .+.+.+.+|+||+. +.|..||++.|.=.... ...++. ++++.++++.+||.+ +.++. +..
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~--~~~i~~~L~~VgL~~~~l~R~-----P~e 141 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKS--QQRIAELLDQVGLPPSFLDRR-----PHE 141 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHH--HHHHHHHHHHcCCCHHHHhcC-----chh
Confidence 442 46788999999985 67889999988754332 122332 333899999999975 34444 457
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 000913 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1226)
Q Consensus 1008 LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~ 1086 (1226)
||||||||++|||||+.+|++|+||||||+||+..++.|+++|.++.++ |.|+|+++||.+. +...|||+++|++ |+
T Consensus 142 LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~-v~~~cdRi~Vm~~-G~ 219 (252)
T COG1124 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL-VEHMCDRIAVMDN-GQ 219 (252)
T ss_pred cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH-HHHHhhheeeeeC-Ce
Confidence 9999999999999999999999999999999999999999999999754 7899999999874 7889999999997 79
Q ss_pred EEEeCCCC
Q 000913 1087 EIYVGPLG 1094 (1226)
Q Consensus 1087 ~~y~G~~~ 1094 (1226)
++..+|..
T Consensus 220 ivE~~~~~ 227 (252)
T COG1124 220 IVEIGPTE 227 (252)
T ss_pred EEEeechh
Confidence 99999863
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=323.66 Aligned_cols=206 Identities=24% Similarity=0.403 Sum_probs=172.0
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCcc----ceEEEecCCCCCCCC
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHIGE 240 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~~~ 240 (1226)
.++|+|||+.+++||+++|+||||+||||||++|+|..++. +|+|.++|.+++...+. .-++||||....|+.
T Consensus 16 ~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~ 92 (237)
T COG0410 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPR 92 (237)
T ss_pred eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccchhh
Confidence 56999999999999999999999999999999999999987 99999999999887663 569999999999999
Q ss_pred CCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcC-Cccccccccccc
Q 000913 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG-LDVCADTMVGDE 319 (1226)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~ 319 (1226)
|||+|||..++...... . . ...+ .+.+.+.|= |.+..+..-|
T Consensus 93 LTVeENL~~g~~~~~~~-~----------~------~~~~------------------~e~v~~lFP~Lker~~~~aG-- 135 (237)
T COG0410 93 LTVEENLLLGAYARRDK-E----------A------QERD------------------LEEVYELFPRLKERRNQRAG-- 135 (237)
T ss_pred CcHHHHHhhhhhccccc-c----------c------cccc------------------HHHHHHHChhHHHHhcCccc--
Confidence 99999999876432110 0 0 0000 222333332 3333444444
Q ss_pred ccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEc
Q 000913 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1226)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1226)
.|||||+|-++|||||+.+|++|+|||||.||-|.-..+|++.++++.+. .+.+|+.+.|....+.+++|+.++|.
T Consensus 136 ---~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~-~g~tIlLVEQn~~~Al~iaDr~yvle 211 (237)
T COG0410 136 ---TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE-GGMTILLVEQNARFALEIADRGYVLE 211 (237)
T ss_pred ---CCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHc-CCcEEEEEeccHHHHHHhhCEEEEEe
Confidence 59999999999999999999999999999999999999999999998753 44677779999999999999999999
Q ss_pred CCeEEEecChhHHHH
Q 000913 400 DGQIVYQGPRELVLE 414 (1226)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1226)
.|+|++.|+.+++.+
T Consensus 212 ~Griv~~G~~~eL~~ 226 (237)
T COG0410 212 NGRIVLSGTAAELLA 226 (237)
T ss_pred CCEEEEecCHHHHhc
Confidence 999999999998853
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=359.71 Aligned_cols=203 Identities=25% Similarity=0.296 Sum_probs=179.1
Q ss_pred CceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh---hhh----cceeeEeecCCC
Q 000913 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETF----ARISGYCEQNDI 951 (1226)
Q Consensus 879 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~----~~~~gyv~Q~~~ 951 (1226)
+.+.+|+|+||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.. ..+ ++.+|||+|++.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 34579999999999999999999999999999999999877 568999999987653 222 568999999999
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000913 952 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1031 (1226)
Q Consensus 952 ~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~L 1031 (1226)
+++.+||+||+.|...+. ..+.++.++++.++++.++|.+..++.+ ..|||||||||+|||||+.+|+||||
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999976543 2345566778999999999988887764 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 000913 1032 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1032 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
||||++||+.++..+++.++++.++ |+|||++||++. ++.+.+|++++|++ |+++..|+.
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~-G~iv~~g~~ 214 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKA-GEIVQVGTP 214 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEeeCCH
Confidence 9999999999999999999998754 899999999986 57889999999985 799999975
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=336.57 Aligned_cols=206 Identities=30% Similarity=0.397 Sum_probs=175.7
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh
Q 000913 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1226)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1226)
+++|+++.++ ++.+|+|+||++++|++++|+||||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (208)
T cd03268 2 KTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQK 66 (208)
T ss_pred EEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccc
Confidence 5677777663 2469999999999999999999999999999999999876 568999999987643
Q ss_pred -hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 000913 937 -ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1015 (1226)
Q Consensus 937 -~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqr 1015 (1226)
...++.++||+|++.+++.+||+||+.+....+. . .+++++++++.+++.+..++.+ ..||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 134 (208)
T cd03268 67 NIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQR 134 (208)
T ss_pred hHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHH
Confidence 2345679999999988889999999988654321 1 1345788999999988777653 5699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 000913 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1226)
Q Consensus 1016 l~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G 1091 (1226)
|+||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 135 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 135 LGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999998877999999999987 47778999999986 6887664
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=360.10 Aligned_cols=214 Identities=24% Similarity=0.363 Sum_probs=187.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|++..+. +..+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 19 ~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 488999988763 2468999999999999999999999999999999999876 5689999999876
Q ss_pred Ch-hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 000913 935 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1226)
Q Consensus 935 ~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqr 1013 (1226)
.. ...+|.+|||+|++.++|.+||.||+.|+...+ ..+..+.++++.++++.++|.++.++. +.+||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~-----~~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRK-----PHQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHH
Confidence 43 234678999999999999999999999975433 234556667899999999999888876 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCC
Q 000913 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1226)
Q Consensus 1014 qrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~ 1092 (1226)
|||+|||||+.+|++|+|||||++||+.++..+.+.|+++.+ .|.|+|++|||+. +++.++|++++|++ |+++..|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 233 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGE 233 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcC
Confidence 999999999999999999999999999999999999998865 4899999999987 68899999999986 79999998
Q ss_pred C
Q 000913 1093 L 1093 (1226)
Q Consensus 1093 ~ 1093 (1226)
+
T Consensus 234 ~ 234 (377)
T PRK11607 234 P 234 (377)
T ss_pred H
Confidence 5
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=356.77 Aligned_cols=206 Identities=27% Similarity=0.374 Sum_probs=175.5
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc------cceEEEecCCCCCC
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNHI 238 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1226)
+++|+|+||.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 45999999999999999999999999999999999999998 9999999998765432 35799999999999
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 000913 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1226)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1226)
+.+||+||+.|+....+... .+....++.+++.+||++..++.+
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~-- 138 (343)
T PRK11153 95 SSRTVFDNVALPLELAGTPK----------------------------------AEIKARVTELLELVGLSDKADRYP-- 138 (343)
T ss_pred CCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh--
Confidence 99999999998765432110 001124567889999987776554
Q ss_pred cccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEE
Q 000913 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1226)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1226)
+.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.+.. +++||.++|+..++.++||+|++|
T Consensus 139 ---~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tiilvtH~~~~i~~~~d~v~~l 214 (343)
T PRK11153 139 ---AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINREL-GLTIVLITHEMDVVKRICDRVAVI 214 (343)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4699999999999999999999999999999999999999999999986533 445566788889999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000913 399 SDGQIVYQGPRELVL 413 (1226)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1226)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 215 DAGRLVEQGTVSEVF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998774
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=374.17 Aligned_cols=217 Identities=29% Similarity=0.437 Sum_probs=181.3
Q ss_pred cCCCCceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEE
Q 000913 849 LPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIT 928 (1226)
Q Consensus 849 ~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~ 928 (1226)
.|.-...++|+||+|.|+.. ...+|+|+|++|+|||.+||+|+||||||||+|+|+|+.. +..|+|.
T Consensus 465 ~~~~~g~I~~~nvsf~y~~~-----------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~ 531 (709)
T COG2274 465 LPKLQGEIEFENVSFRYGPD-----------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRIL 531 (709)
T ss_pred ccccCceEEEEEEEEEeCCC-----------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEE
Confidence 34445689999999999742 2369999999999999999999999999999999999987 5689999
Q ss_pred EcCccCC---hhhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcc-------ccc
Q 000913 929 ISGYPKK---QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQS 998 (1226)
Q Consensus 929 i~g~~~~---~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~ 998 (1226)
+||+++. ...+|+.+|||+|++.++. -|++||+.++. ++.+.+ .+.++++..|..+. .++
T Consensus 532 ~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~-----p~~~~e----~i~~A~~~ag~~~fI~~lP~gy~t 601 (709)
T COG2274 532 LDGVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGN-----PEATDE----EIIEAAQLAGAHEFIENLPMGYDT 601 (709)
T ss_pred ECCEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCC-----CCCCHH----HHHHHHHHhCcHHHHHhccccccc
Confidence 9999864 4568899999999998775 59999998752 233322 34555555554433 344
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeE
Q 000913 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1078 (1226)
Q Consensus 999 ~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v 1078 (1226)
.+|.. ..+||||||||++|||||+++|+||+||||||+||+.+.+.|++.|.+.. +|+|+|+++|+++ ..+.+|++
T Consensus 602 ~v~E~-G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrI 677 (709)
T COG2274 602 PVGEG-GANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRI 677 (709)
T ss_pred ccccC-CCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEE
Confidence 55554 46899999999999999999999999999999999999999999999985 5899999999986 68899999
Q ss_pred EEEecCcEEEEeCCC
Q 000913 1079 FLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1079 ~ll~~Gg~~~y~G~~ 1093 (1226)
++|++ |+++..|+.
T Consensus 678 iVl~~-Gkiv~~gs~ 691 (709)
T COG2274 678 IVLDQ-GKIVEQGSH 691 (709)
T ss_pred EEccC-CceeccCCH
Confidence 99985 799999984
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=340.69 Aligned_cols=213 Identities=23% Similarity=0.282 Sum_probs=177.6
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCC-----CCceEEEEEEEcC
Q 000913 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-----TGGYITGNITISG 931 (1226)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~-----~~~~~~G~i~i~g 931 (1226)
+++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|.. . +.+|+|.++|
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g 66 (227)
T cd03260 2 ELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDG 66 (227)
T ss_pred EEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECC
Confidence 5677777653 236999999999999999999999999999999999986 4 5689999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 000913 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1226)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 1006 (1226)
.+... ..+++.++|++|++.++ .+||+||+.+....+.. ....+.+++++++++.+++.+..+.... +.
T Consensus 67 ~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~ 140 (227)
T cd03260 67 KDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGI--KLKEELDERVEEALRKAALWDEVKDRLH---AL 140 (227)
T ss_pred EEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCChHHhccCC---cc
Confidence 87532 23456799999998877 79999999886543321 1222345668899999999876655421 25
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 000913 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1226)
Q Consensus 1007 ~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~ 1086 (1226)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ +|||+++|+++ ++.+.+|++++|++ |+
T Consensus 141 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G~ 217 (227)
T cd03260 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-GR 217 (227)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-CE
Confidence 79999999999999999999999999999999999999999999999877 99999999987 47788999999986 68
Q ss_pred EEEeCCC
Q 000913 1087 EIYVGPL 1093 (1226)
Q Consensus 1087 ~~y~G~~ 1093 (1226)
+++.|+.
T Consensus 218 i~~~g~~ 224 (227)
T cd03260 218 LVEFGPT 224 (227)
T ss_pred EEEecCc
Confidence 9988875
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=338.92 Aligned_cols=208 Identities=28% Similarity=0.408 Sum_probs=173.4
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++... ..+.+|+|+||++++|++++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~~~---------~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 69 (218)
T cd03255 1 IELKNLSKTYGGGG---------EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDIS 69 (218)
T ss_pred CeEeeeEEEecCCC---------cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehh
Confidence 35678887764210 01469999999999999999999999999999999999876 56899999998754
Q ss_pred hh------h-hcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 000913 936 QE------T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 1008 (1226)
Q Consensus 936 ~~------~-~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~L 1008 (1226)
.. . .++.++|++|++.+++.+||+|++.+....+. ......++.++++++.++|.+..++.+ ..|
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 141 (218)
T cd03255 70 KLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SEL 141 (218)
T ss_pred hcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhc
Confidence 21 1 24579999999999999999999998764432 223344567889999999988776653 579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 000913 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1226)
Q Consensus 1009 SgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~H~p~~~i~~~~D~v~ll~~G 1084 (1226)
|||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++++ .|+|||+++|+++. + +.+|++++|++|
T Consensus 142 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~v~~l~~G 216 (218)
T cd03255 142 SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-A-EYADRIIELRDG 216 (218)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-H-hhhcEEEEeeCC
Confidence 99999999999999999999999999999999999999999999976 58999999999863 5 489999999874
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=341.09 Aligned_cols=217 Identities=24% Similarity=0.314 Sum_probs=181.9
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++.. .+.+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 5678888776411 001269999999999999999999999999999999999876 46899999998764
Q ss_pred hh------hhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 000913 936 QE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1226)
Q Consensus 936 ~~------~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LS 1009 (1226)
.. ..++.++|++|++.+++.+|++||+.+....+. .......+.++++++.++|.+..+.. +..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAY-----PAQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcC-----hhhCC
Confidence 21 235679999999999999999999988654332 23344456788999999998877765 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 000913 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1226)
Q Consensus 1010 gGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~ 1088 (1226)
||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |+++
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~ 220 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVV 220 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998765 899999999986 47788999999986 7899
Q ss_pred EeCCC
Q 000913 1089 YVGPL 1093 (1226)
Q Consensus 1089 y~G~~ 1093 (1226)
+.|+.
T Consensus 221 ~~~~~ 225 (233)
T cd03258 221 EEGTV 225 (233)
T ss_pred EecCH
Confidence 88864
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=338.14 Aligned_cols=221 Identities=35% Similarity=0.603 Sum_probs=182.0
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCC-CceEEEEEEEcCccC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-GGYITGNITISGYPK 934 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~-~~~~~G~i~i~g~~~ 934 (1226)
+.|+|+++.++... ..+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+.+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~~---------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNWN---------KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecCc---------cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 45788888874210 13579999999999999999999999999999999999864 124689999999877
Q ss_pred ChhhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH-HHHHcCCCcccccccCCCCCCCCCHHHH
Q 000913 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDE-VMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1226)
Q Consensus 935 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~-~l~~l~l~~~~~~~~g~~~~~~LSgGqr 1013 (1226)
....+++.++|++|++.+++.+||+||+.|.+................+++ .++.+++.++.++. ++.||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHH
Confidence 554566789999999999999999999998765433221122223334555 89999998777665 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 000913 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1226)
Q Consensus 1014 qrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G 1091 (1226)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||+++|++..++.+.+|++++|++ |++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999999998877999999999985468899999999986 6888765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=343.44 Aligned_cols=216 Identities=26% Similarity=0.309 Sum_probs=178.0
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh
Q 000913 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1226)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1226)
+++|+++.++. ++.+|+|+|+++++|++++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 67 (241)
T cd03256 2 EVENLSKTYPN------------GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINK 67 (241)
T ss_pred EEeeEEEecCC------------ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccc
Confidence 46777776531 1469999999999999999999999999999999999875 468999999987542
Q ss_pred ------hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 000913 937 ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR-----LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 1005 (1226)
Q Consensus 937 ------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr-----~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~ 1005 (1226)
...++.++|++|++.+++.+||+||+.+..... ...........+.+.++++.++|.+..+.. +
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 142 (241)
T cd03256 68 LKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-----A 142 (241)
T ss_pred cCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----c
Confidence 234567999999998888999999998753210 000111123345688899999998776665 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecC
Q 000913 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1226)
Q Consensus 1006 ~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~G 1084 (1226)
..|||||||||+||++|+.+|+||+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.+|++++|++
T Consensus 143 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~- 220 (241)
T cd03256 143 DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD- 220 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999998764 899999999987 47779999999986
Q ss_pred cEEEEeCCC
Q 000913 1085 GQEIYVGPL 1093 (1226)
Q Consensus 1085 g~~~y~G~~ 1093 (1226)
|++++.|+.
T Consensus 221 G~i~~~~~~ 229 (241)
T cd03256 221 GRIVFDGPP 229 (241)
T ss_pred CEEEeecCH
Confidence 789998875
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=325.23 Aligned_cols=202 Identities=24% Similarity=0.388 Sum_probs=186.8
Q ss_pred CceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCH
Q 000913 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 958 (1226)
Q Consensus 879 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv 958 (1226)
+++.+++|+||.++||+++|++|+|||||||++++|.|... +.+|.|.++|.+.++.. +.++||.|.+.-+++.+||
T Consensus 13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~~~-~~rIGyLPEERGLy~k~tv 89 (300)
T COG4152 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEI-KNRIGYLPEERGLYPKMTV 89 (300)
T ss_pred CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhhhh-hhhcccChhhhccCccCcH
Confidence 56789999999999999999999999999999999999987 57899999999987644 4568999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000913 959 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038 (1226)
Q Consensus 959 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgL 1038 (1226)
.|.|.|-|.|+. ++.++.+..++..|+.+++....... ++.||-|++|++.+-.+++++|++++||||+|||
T Consensus 90 ~dql~yla~LkG---m~~~e~~~~~~~wLer~~i~~~~~~k-----Ik~LSKGnqQKIQfisaviHePeLlILDEPFSGL 161 (300)
T COG4152 90 EDQLKYLAELKG---MPKAEIQKKLQAWLERLEIVGKKTKK-----IKELSKGNQQKIQFISAVIHEPELLILDEPFSGL 161 (300)
T ss_pred HHHHHHHHHhcC---CcHHHHHHHHHHHHHhccccccccch-----HHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCC
Confidence 999999999874 56778888899999999999988877 4679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 000913 1039 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1039 D~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
||.+.+.+.+.+.++.+.|.|||+++|+++ .+.++||++++|++ |+.|..|+.
T Consensus 162 DPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v 214 (300)
T COG4152 162 DPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTV 214 (300)
T ss_pred ChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccH
Confidence 999999999999999999999999999997 68999999999986 799999985
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=355.50 Aligned_cols=205 Identities=27% Similarity=0.392 Sum_probs=175.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC--ccceEEEecCCCCCCCCCCH
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 243 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1226)
.+|+||||+|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.+|||+|++.+++.+||
T Consensus 55 ~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv 131 (340)
T PRK13536 55 AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTV 131 (340)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcH
Confidence 4999999999999999999999999999999999999998 999999999875432 24679999999999999999
Q ss_pred HHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 000913 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1226)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1226)
+||+.|.....+... .+....++.+++.+||++..++.++ +
T Consensus 132 ~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~L~~~~~~~~~-----~ 172 (340)
T PRK13536 132 RENLLVFGRYFGMST----------------------------------REIEAVIPSLLEFARLESKADARVS-----D 172 (340)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhCCChh-----h
Confidence 999997654432110 0011234567889999988887765 5
Q ss_pred CChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeE
Q 000913 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1226)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1226)
|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++.. . +++|+.++|+..++.++||+|++|++|++
T Consensus 173 LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~-g~tilisSH~l~e~~~~~d~i~il~~G~i 250 (340)
T PRK13536 173 LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVLEAGRK 250 (340)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999864 3 44556678899999999999999999999
Q ss_pred EEecChhHHHH
Q 000913 404 VYQGPRELVLE 414 (1226)
Q Consensus 404 v~~G~~~~~~~ 414 (1226)
+++|+.+++..
T Consensus 251 ~~~g~~~~l~~ 261 (340)
T PRK13536 251 IAEGRPHALID 261 (340)
T ss_pred EEEcCHHHHHh
Confidence 99999998864
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=340.61 Aligned_cols=214 Identities=22% Similarity=0.334 Sum_probs=181.7
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++ ++.+|+|+|+++++||++||+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 56788887763 2469999999999999999999999999999999999876 56899999998764
Q ss_pred h-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 000913 936 Q-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1226)
Q Consensus 936 ~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSg 1010 (1226)
. ...++.++|++|++.+++.+||+|++.+...... .....+.++.+.++++.++|.+..+.. +..|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHY-----PSELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcC-----hhhcCH
Confidence 2 2345679999999988889999999987642111 123444556788999999998777765 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 000913 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1226)
Q Consensus 1011 Gqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~ 1090 (1226)
|||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAED 217 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999877999999999987 47788999999986 789999
Q ss_pred CCC
Q 000913 1091 GPL 1093 (1226)
Q Consensus 1091 G~~ 1093 (1226)
|+.
T Consensus 218 g~~ 220 (240)
T PRK09493 218 GDP 220 (240)
T ss_pred CCH
Confidence 875
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=335.93 Aligned_cols=191 Identities=28% Similarity=0.385 Sum_probs=163.7
Q ss_pred eEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCChhhhcceeeEeecCCC-CCCCCCHH
Q 000913 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI-HSPFVTIY 959 (1226)
Q Consensus 881 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~-~~~~lTv~ 959 (1226)
+.+|+|+||++++|++++|+|||||||||||++|+|... +.+|+|.++|.+......++.+||++|++. .+..+||+
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 469999999999999999999999999999999999876 568999999987654445567999999974 33467999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 000913 960 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039 (1226)
Q Consensus 960 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD 1039 (1226)
||+.+..... . . ..+.++++++.++|.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~--~---~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKEL--D---A--GNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhc--C---c--cHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 9998754322 1 1 1245789999999988877764 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 000913 1040 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1226)
Q Consensus 1040 ~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~ 1087 (1226)
+.++..+++.|++++++|+|||+++|+++ ++.+.+|++++|++ |++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i 204 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAI 204 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 99999999999999777999999999986 47778999999986 554
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=336.58 Aligned_cols=206 Identities=25% Similarity=0.344 Sum_probs=174.7
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++ +++.+|+|+|++|++|++++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 56788887763 12469999999999999999999999999999999999876 46899999998764
Q ss_pred h------hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 000913 936 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1226)
Q Consensus 936 ~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LS 1009 (1226)
. ..+++.++|++|++.+++.+||+||+.+....+. ......++.++++++.+++.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAFP-----EQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 2 1245679999999988889999999998754331 223344567889999999987666653 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 000913 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1226)
Q Consensus 1010 gGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~G 1084 (1226)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++|
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDG 213 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCC
Confidence 99999999999999999999999999999999999999999998777999999999986 577789999999864
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=334.87 Aligned_cols=199 Identities=29% Similarity=0.442 Sum_probs=166.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-cceEEEecCCCCCCCCCCHH
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1226)
++|+|+||.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 90 (213)
T cd03259 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVA 90 (213)
T ss_pred eeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHH
Confidence 4999999999999999999999999999999999999998 9999999998754332 35799999998889999999
Q ss_pred HHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 000913 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1226)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1226)
||+.++....+... .+....++.+++.+||++..++.+ ..|
T Consensus 91 ~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 131 (213)
T cd03259 91 ENIAFGLKLRGVPK----------------------------------AEIRARVRELLELVGLEGLLNRYP-----HEL 131 (213)
T ss_pred HHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhcCh-----hhC
Confidence 99988653221100 001123466788999987666554 469
Q ss_pred ChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEE
Q 000913 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1226)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1226)
||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++... +++|+.++|+..++.+++|+|++|++|+++
T Consensus 132 SgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~~~~d~v~~l~~G~i~ 210 (213)
T cd03259 132 SGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQREL-GITTIYVTHDQEEALALADRIAVMNEGRIV 210 (213)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999876533 445556788888999999999999999998
Q ss_pred Eec
Q 000913 405 YQG 407 (1226)
Q Consensus 405 ~~G 407 (1226)
+.|
T Consensus 211 ~~g 213 (213)
T cd03259 211 QVG 213 (213)
T ss_pred ecC
Confidence 765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=349.25 Aligned_cols=218 Identities=22% Similarity=0.307 Sum_probs=181.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++... ...+.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECC
Confidence 67889988874210 012469999999999999999999999999999999999876 56899999998764
Q ss_pred h-----hhhcceeeEeecCCC-CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCC--cccccccCCCCCCC
Q 000913 936 Q-----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN--PLRQSLVGLPGVSG 1007 (1226)
Q Consensus 936 ~-----~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~--~~~~~~~g~~~~~~ 1007 (1226)
. ...++.+|||+|++. .+...||+|++.|..... ..+.++..++++++++.++|. +..++. +..
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PFE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC-----ccc
Confidence 3 234578999999963 333579999999865432 234556667789999999996 555655 457
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 000913 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1226)
Q Consensus 1008 LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~ 1086 (1226)
||||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|++ |+
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G~ 222 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GK 222 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999986 47788999999986 79
Q ss_pred EEEeCCC
Q 000913 1087 EIYVGPL 1093 (1226)
Q Consensus 1087 ~~y~G~~ 1093 (1226)
+++.|+.
T Consensus 223 i~~~g~~ 229 (287)
T PRK13637 223 CELQGTP 229 (287)
T ss_pred EEEECCH
Confidence 9999874
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=347.09 Aligned_cols=218 Identities=27% Similarity=0.397 Sum_probs=177.0
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC-----ccceEEEecCCCC-CC
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-----PQRTAAYISQHDN-HI 238 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~-----~~~~~~yv~Q~d~-~~ 238 (1226)
+++|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++. .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 35999999999999999999999999999999999999998 999999999886532 2467999999853 44
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc--ccccccc
Q 000913 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD--VCADTMV 316 (1226)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~v 316 (1226)
..+||+||+.|+....+.. .++....++++++.+||+ +..|+
T Consensus 97 ~~~tv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~-- 140 (287)
T PRK13637 97 FEETIEKDIAFGPINLGLS----------------------------------EEEIENRVKRAMNIVGLDYEDYKDK-- 140 (287)
T ss_pred ccccHHHHHHhHHHHCCCC----------------------------------HHHHHHHHHHHHHHcCCCchhhccC--
Confidence 5689999999875432210 011123456789999996 44454
Q ss_pred cccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEE
Q 000913 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1226)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1226)
.++.|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++.+. .+++|+.++|+..++..++|+|+
T Consensus 141 ---~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~~~~drv~ 216 (287)
T PRK13637 141 ---SPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE-YNMTIILVSHSMEDVAKLADRII 216 (287)
T ss_pred ---CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEE
Confidence 44579999999999999999999999999999999999999999999998653 34556667888899999999999
Q ss_pred EEcCCeEEEecChhHHHH---HHHhcCCCCCC
Q 000913 397 LLSDGQIVYQGPRELVLE---FFASMGFRCPK 425 (1226)
Q Consensus 397 lL~~G~iv~~G~~~~~~~---~F~~~Gf~cp~ 425 (1226)
+|++|+++++|+++++.+ .+...|+.+|.
T Consensus 217 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 217 VMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EEECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 999999999999988743 23345655544
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=341.88 Aligned_cols=214 Identities=26% Similarity=0.359 Sum_probs=181.2
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++ ++.+|+|+||++++|++++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcc
Confidence 67888887763 2469999999999999999999999999999999999876 46899999997653
Q ss_pred h-----------hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCC
Q 000913 936 Q-----------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 1004 (1226)
Q Consensus 936 ~-----------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~ 1004 (1226)
. ...++.++|++|++.+++..||+||+.+...... ....++..+.++++++.++|.+..+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~----- 141 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY----- 141 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----
Confidence 2 2245679999999988888999999987543211 123344556788999999998776665
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 000913 1005 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1226)
Q Consensus 1005 ~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~G 1084 (1226)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|++. ++.+.+|++++|++
T Consensus 142 ~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~- 219 (250)
T PRK11264 142 PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ- 219 (250)
T ss_pred hhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 3579999999999999999999999999999999999999999999999877999999999986 47788999999986
Q ss_pred cEEEEeCCC
Q 000913 1085 GQEIYVGPL 1093 (1226)
Q Consensus 1085 g~~~y~G~~ 1093 (1226)
|++++.|+.
T Consensus 220 G~i~~~~~~ 228 (250)
T PRK11264 220 GRIVEQGPA 228 (250)
T ss_pred CEEEEeCCH
Confidence 789988874
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=344.44 Aligned_cols=205 Identities=20% Similarity=0.222 Sum_probs=153.0
Q ss_pred CCceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcC
Q 000913 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (1226)
Q Consensus 852 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g 931 (1226)
.|..+.+.+|.+.++.. .-+++.+++..++.-...+++|+||+||||+++++.|... +..|-+.+.+
T Consensus 359 ~~p~l~i~~V~f~y~p~-----------~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~ 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPS-----------EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP 425 (582)
T ss_pred CCCeeEEEeeeccCCCc-----------chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc
Confidence 34467888888776521 1168999999999999999999999999999999999655 4567776654
Q ss_pred ccCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 000913 932 YPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1226)
Q Consensus 932 ~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgG 1011 (1226)
++.++|..|...-+-.+.|.+ +.+-...+ +.... +.+++-+..+||..-.- -. .+.+||||
T Consensus 426 --------r~ri~~f~Qhhvd~l~~~v~~-vd~~~~~~--pG~~~----ee~r~hl~~~Gl~g~la---~~-si~~LSGG 486 (582)
T KOG0062|consen 426 --------RLRIKYFAQHHVDFLDKNVNA-VDFMEKSF--PGKTE----EEIRRHLGSFGLSGELA---LQ-SIASLSGG 486 (582)
T ss_pred --------cceecchhHhhhhHHHHHhHH-HHHHHHhC--CCCCH----HHHHHHHHhcCCCchhh---hc-cccccCCc
Confidence 345889999765444444433 22222222 22222 23566788888864221 11 15689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 000913 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1226)
Q Consensus 1012 qrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G 1091 (1226)
||-||++|.....+|.+|+|||||+.||..+-..+-+.|++. +..||++||+-++ +-..|+++.+.++|...-+.|
T Consensus 487 QKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~f-i~~~c~E~Wvve~g~vt~ieg 562 (582)
T KOG0062|consen 487 QKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEEF-ISSLCKELWVVEDGKVTPIEG 562 (582)
T ss_pred chhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHHH-HhhcCceeEEEcCCcEEeeec
Confidence 999999999999999999999999999999999999999875 4589999999764 777999999999765444555
Q ss_pred C
Q 000913 1092 P 1092 (1226)
Q Consensus 1092 ~ 1092 (1226)
.
T Consensus 563 ~ 563 (582)
T KOG0062|consen 563 G 563 (582)
T ss_pred c
Confidence 4
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=335.16 Aligned_cols=205 Identities=25% Similarity=0.367 Sum_probs=173.8
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh
Q 000913 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1226)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1226)
+++|+++.++ +.+.+|+|+|+++++|++++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 67 (214)
T cd03292 2 EFINVTKTYP------------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSD 67 (214)
T ss_pred EEEEEEEEeC------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEccc
Confidence 4677777763 12469999999999999999999999999999999999866 468999999986532
Q ss_pred ------hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 000913 937 ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1226)
Q Consensus 937 ------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSg 1010 (1226)
..+++.++|++|++.+++.+|++||+.+....+. ...++.++.++++++.+++.+..+..+ ..|||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 139 (214)
T cd03292 68 LRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELSG 139 (214)
T ss_pred CCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCH
Confidence 1245679999999999999999999998654332 233444567889999999987776653 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 000913 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1226)
Q Consensus 1011 Gqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~G 1084 (1226)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. .+.+.+|++++|++|
T Consensus 140 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G 212 (214)
T cd03292 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALERG 212 (214)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999777999999999986 477789999999864
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-37 Score=337.07 Aligned_cols=217 Identities=24% Similarity=0.325 Sum_probs=180.3
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++... ..+.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~~~~---------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEGS---------VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCCC---------cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence 378899998874210 11469999999999999999999999999999999999876 5689999999876
Q ss_pred Chh------hh-cceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 000913 935 KQE------TF-ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 1007 (1226)
Q Consensus 935 ~~~------~~-~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~ 1007 (1226)
... .+ ++.++|++|++.+++.+|++||+.+....+ ....++.+++++++++.++|.+..++. +..
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhh
Confidence 431 12 256999999998888899999999865432 123344456788999999998777665 357
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 000913 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1226)
Q Consensus 1008 LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~ 1086 (1226)
||||||||++||++|+.+|+||||||||+|||+.++..+++.|+++.+ +|+|||+++|+++. + +.+|++++|.+ |+
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~-~~~~~~~~l~~-G~ 222 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-A-KRMSRQLEMRD-GR 222 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhhCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999999999875 58999999999863 4 44689999985 78
Q ss_pred EEEeCCC
Q 000913 1087 EIYVGPL 1093 (1226)
Q Consensus 1087 ~~y~G~~ 1093 (1226)
++..|++
T Consensus 223 i~~~~~~ 229 (233)
T PRK11629 223 LTAELSL 229 (233)
T ss_pred EEEEecc
Confidence 9988875
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=334.44 Aligned_cols=204 Identities=29% Similarity=0.390 Sum_probs=171.4
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC--ccceEEEecCCCCCCCCCCH
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 243 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1226)
++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (220)
T cd03265 14 EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTG 90 (220)
T ss_pred EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCcH
Confidence 4999999999999999999999999999999999999998 999999998764321 23579999999989999999
Q ss_pred HHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 000913 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1226)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1226)
+||+.+.....+... .+....++.+++.+||++..++.+ ..
T Consensus 91 ~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 131 (220)
T cd03265 91 WENLYIHARLYGVPG----------------------------------AERRERIDELLDFVGLLEAADRLV-----KT 131 (220)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCCh-----hh
Confidence 999998754322100 001123567889999987766655 46
Q ss_pred CChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeE
Q 000913 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1226)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1226)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+ ..+++|+.++|+..++.+++|+|++|++|++
T Consensus 132 LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i 210 (220)
T cd03265 132 YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKE-EFGMTILLTTHYMEEAEQLCDRVAIIDHGRI 210 (220)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 999999999999999999999999999999999999999999998765 3244566678888999999999999999999
Q ss_pred EEecChhHH
Q 000913 404 VYQGPRELV 412 (1226)
Q Consensus 404 v~~G~~~~~ 412 (1226)
++.|+++++
T Consensus 211 ~~~~~~~~~ 219 (220)
T cd03265 211 IAEGTPEEL 219 (220)
T ss_pred EEeCChHHc
Confidence 999987653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=337.75 Aligned_cols=209 Identities=30% Similarity=0.401 Sum_probs=171.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-cceEEEecCCCCCCCCCCHH
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1226)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.+||+
T Consensus 16 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 92 (239)
T cd03296 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVF 92 (239)
T ss_pred EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCHH
Confidence 4999999999999999999999999999999999999988 9999999988754332 35799999998888899999
Q ss_pred HHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 000913 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1226)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1226)
||+.|+....+...+.. ..+....++.+++.+||++..++.+ ..|
T Consensus 93 e~l~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 137 (239)
T cd03296 93 DNVAFGLRVKPRSERPP------------------------------EAEIRAKVHELLKLVQLDWLADRYP-----AQL 137 (239)
T ss_pred HHHhhhhhhccccccCC------------------------------HHHHHHHHHHHHHHcCChhhhhcCh-----hhC
Confidence 99998754321100000 0001123567788999987666554 469
Q ss_pred ChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEE
Q 000913 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1226)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1226)
||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++...+. +||.++|+..++.+++|+|++|++|+++
T Consensus 138 S~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~-tvii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (239)
T cd03296 138 SGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHV-TTVFVTHDQEEALEVADRVVVMNKGRIE 216 (239)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 999999999999999999999999999999999999999999988653344 4555777888899999999999999999
Q ss_pred EecChhHHH
Q 000913 405 YQGPRELVL 413 (1226)
Q Consensus 405 ~~G~~~~~~ 413 (1226)
+.|+++++.
T Consensus 217 ~~~~~~~~~ 225 (239)
T cd03296 217 QVGTPDEVY 225 (239)
T ss_pred EecCHHHHh
Confidence 999988763
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=336.08 Aligned_cols=214 Identities=25% Similarity=0.391 Sum_probs=180.0
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++. +.+.+|+|+|+++++|+++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (220)
T cd03263 1 LQIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIR 67 (220)
T ss_pred CEEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 356778777631 11469999999999999999999999999999999999876 56899999998764
Q ss_pred h--hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 000913 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1226)
Q Consensus 936 ~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqr 1013 (1226)
. ..+++.++|++|++.+++.+||+||+.+....+. ...++..+.++++++.++|.+..++.+ ..||||||
T Consensus 68 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 139 (220)
T cd03263 68 TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMK 139 (220)
T ss_pred cchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHH
Confidence 3 2345679999999988889999999988654432 233344556889999999987776653 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 000913 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1014 qrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
||++||++|+.+|++|+|||||+|||+.++..+++.|+++++ ++|||+++|++. .+.+.+|++++|++ |++++.|+.
T Consensus 140 qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 140 RKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 999999999999999999999999999999999999999875 699999999987 47788999999986 688888864
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=340.12 Aligned_cols=213 Identities=27% Similarity=0.374 Sum_probs=179.7
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh
Q 000913 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1226)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1226)
+++|+++.++. .+.+|+|+|++|++|++++|+|||||||||||++|+|... +..|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 67 (242)
T cd03295 2 EFENVTKRYGG------------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIRE 67 (242)
T ss_pred EEEEEEEEeCC------------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCc
Confidence 46777777631 1459999999999999999999999999999999999876 468999999987532
Q ss_pred ---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCc--ccccccCCCCCCCCCHH
Q 000913 937 ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP--LRQSLVGLPGVSGLSTE 1011 (1226)
Q Consensus 937 ---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~--~~~~~~g~~~~~~LSgG 1011 (1226)
..+++.++|++|++.+++.+||+||+.+...++. .+..+..+.+.++++.+++.+ ..+.. +..||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~G 139 (242)
T cd03295 68 QDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLK---WPKEKIRERADELLALVGLDPAEFADRY-----PHELSGG 139 (242)
T ss_pred CChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCHH
Confidence 2345679999999999989999999988654331 233444567889999999985 55554 3579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 000913 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1226)
Q Consensus 1012 qrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~ 1090 (1226)
|||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.
T Consensus 140 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (242)
T cd03295 140 QQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQV 217 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 999999999999999999999999999999999999999999764 899999999986 57788999999986 788888
Q ss_pred CCC
Q 000913 1091 GPL 1093 (1226)
Q Consensus 1091 G~~ 1093 (1226)
|+.
T Consensus 218 ~~~ 220 (242)
T cd03295 218 GTP 220 (242)
T ss_pred cCH
Confidence 874
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=351.23 Aligned_cols=206 Identities=28% Similarity=0.395 Sum_probs=176.3
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC--ccceEEEecCCCCCCCCCC
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMT 242 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1226)
+++|+||||.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 46999999999999999999999999999999999999998 999999998875421 2357999999999999999
Q ss_pred HHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 000913 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1226)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1226)
|+||+.|.+++.+... .+....++.+++.+||++..++.++
T Consensus 83 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 123 (302)
T TIGR01188 83 GRENLEMMGRLYGLPK----------------------------------DEAEERAEELLELFELGEAADRPVG----- 123 (302)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhCCchh-----
Confidence 9999998765443110 0011235678999999887776654
Q ss_pred CCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCe
Q 000913 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1226)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1226)
.|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+ . +++|+.++|+..++.++||+|++|++|+
T Consensus 124 ~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~-g~tvi~~sH~~~~~~~~~d~v~~l~~G~ 201 (302)
T TIGR01188 124 TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-E-GVTILLTTHYMEEADKLCDRIAIIDHGR 201 (302)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999998764 3 4455667888999999999999999999
Q ss_pred EEEecChhHHHH
Q 000913 403 IVYQGPRELVLE 414 (1226)
Q Consensus 403 iv~~G~~~~~~~ 414 (1226)
+++.|+.+++.+
T Consensus 202 i~~~g~~~~l~~ 213 (302)
T TIGR01188 202 IIAEGTPEELKR 213 (302)
T ss_pred EEEECCHHHHHH
Confidence 999999988754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-37 Score=345.25 Aligned_cols=215 Identities=24% Similarity=0.328 Sum_probs=181.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++. .+.+|+|||+++++||++||+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYKD------------GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeCC------------CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 3778999887741 2359999999999999999999999999999999999876 4689999999876
Q ss_pred Ch---hhhcceeeEeecCCC-CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 000913 935 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1226)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSg 1010 (1226)
.. ...++.+||++|++. .++..||.||+.|..... ..+.++.++.+.++++.++|.+..++.+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCH
Confidence 43 234567999999963 345689999999864322 2344445567889999999988777764 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 000913 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1226)
Q Consensus 1011 Gqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~ 1090 (1226)
|||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ .+.+.+|++++|++ |++++.
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~ 219 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAE 219 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999986 47789999999986 789999
Q ss_pred CCC
Q 000913 1091 GPL 1093 (1226)
Q Consensus 1091 G~~ 1093 (1226)
|+.
T Consensus 220 g~~ 222 (274)
T PRK13647 220 GDK 222 (274)
T ss_pred CCH
Confidence 875
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=342.23 Aligned_cols=217 Identities=24% Similarity=0.274 Sum_probs=178.1
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++. ++.+|+|+|+++++|++++|+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~------------~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYPN------------GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecCC------------CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhh
Confidence 457788776530 2459999999999999999999999999999999999876 46899999998753
Q ss_pred h------hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCC
Q 000913 936 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLR-----LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 1004 (1226)
Q Consensus 936 ~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr-----~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~ 1004 (1226)
. ..+++.++|++|++.+++.+||+||+.+..... ........+.++++.++++.+++.+..+..
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 142 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR----- 142 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----
Confidence 2 124567999999998888999999998742110 000011233456688999999998776665
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEec
Q 000913 1005 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1226)
Q Consensus 1005 ~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~ 1083 (1226)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ .+.+.||++++|++
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 143 ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA 221 (243)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC
Confidence 3579999999999999999999999999999999999999999999998754 899999999987 47788999999986
Q ss_pred CcEEEEeCCC
Q 000913 1084 GGQEIYVGPL 1093 (1226)
Q Consensus 1084 Gg~~~y~G~~ 1093 (1226)
|++++.|+.
T Consensus 222 -G~i~~~~~~ 230 (243)
T TIGR02315 222 -GEIVFDGAP 230 (243)
T ss_pred -CEEEecCCH
Confidence 688888875
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=345.36 Aligned_cols=203 Identities=25% Similarity=0.306 Sum_probs=173.8
Q ss_pred CceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCChh---h----hcceeeEeecCCC
Q 000913 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE---T----FARISGYCEQNDI 951 (1226)
Q Consensus 879 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~Q~~~ 951 (1226)
+.+.+|+|+|+++++|++++|+||||||||||+++|+|... +.+|+|.++|.+.... . .++.++|++|++.
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 112 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA 112 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcc
Confidence 45679999999999999999999999999999999999876 4689999999875421 1 1356999999999
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000913 952 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1031 (1226)
Q Consensus 952 ~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~L 1031 (1226)
+++.+||+||+.+...... ....+..+.++++++.++|.+..++.+ ..|||||||||+||++|+.+|+||||
T Consensus 113 ~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 113 LLPHRTVLENVAFGLEVQG---VPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred cCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8889999999988654321 223444567889999999988777764 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 000913 1032 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1032 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
||||+|||+.++..+++.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 245 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTP 245 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999998754 899999999986 47788999999986 789888874
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=336.55 Aligned_cols=211 Identities=28% Similarity=0.422 Sum_probs=175.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++ ++.+|+|+||++++|+++||+|||||||||||++|+|... +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 65 (222)
T cd03224 1 LEVENLNAGYG-------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDIT 65 (222)
T ss_pred CEEeeEEeecC-------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcC
Confidence 35677776653 2469999999999999999999999999999999999876 46899999998754
Q ss_pred hh---h-hcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHc-CCCcccccccCCCCCCCCCH
Q 000913 936 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNPLRQSLVGLPGVSGLST 1010 (1226)
Q Consensus 936 ~~---~-~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l-~l~~~~~~~~g~~~~~~LSg 1010 (1226)
.. . .++.++|++|++.+++.+|++||+.+....+. ..+.++.+.++++.+ ++.+..++. +..|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~ 135 (222)
T cd03224 66 GLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSG 135 (222)
T ss_pred CCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCH
Confidence 21 1 24569999999999999999999988654321 122344567788887 466655554 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 000913 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1226)
Q Consensus 1011 Gqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~ 1090 (1226)
|||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++. ++.+.+|++++|++ |+++..
T Consensus 136 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 213 (222)
T cd03224 136 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLE 213 (222)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEe
Confidence 9999999999999999999999999999999999999999999877899999999986 47888999999986 788888
Q ss_pred CCC
Q 000913 1091 GPL 1093 (1226)
Q Consensus 1091 G~~ 1093 (1226)
|+.
T Consensus 214 ~~~ 216 (222)
T cd03224 214 GTA 216 (222)
T ss_pred CCH
Confidence 864
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=348.10 Aligned_cols=205 Identities=28% Similarity=0.405 Sum_probs=173.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC--ccceEEEecCCCCCCCCCCH
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 243 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1226)
++|+||||++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||
T Consensus 18 ~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 94 (303)
T TIGR01288 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTV 94 (303)
T ss_pred EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcH
Confidence 4999999999999999999999999999999999999998 999999998864322 24679999999888999999
Q ss_pred HHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 000913 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1226)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1226)
+||+.+.....+... .+....++.+++.+||++..++.++ .
T Consensus 95 ~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~l~~~~~~~~~-----~ 135 (303)
T TIGR01288 95 RENLLVFGRYFGMST----------------------------------REIEAVIPSLLEFARLESKADVRVA-----L 135 (303)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhHhcCchh-----h
Confidence 999987543322100 0011234567889999887777654 5
Q ss_pred CChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeE
Q 000913 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1226)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1226)
|||||||||+||+||+.+|+++||||||+|||+.++..+.+.|++++. . +++|+.++|+..++.++||+|++|++|++
T Consensus 136 LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~-g~til~~sH~~~~~~~~~d~i~~l~~G~i 213 (303)
T TIGR01288 136 LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVLESGRK 213 (303)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999864 3 44566678888999999999999999999
Q ss_pred EEecChhHHHH
Q 000913 404 VYQGPRELVLE 414 (1226)
Q Consensus 404 v~~G~~~~~~~ 414 (1226)
++.|+++++..
T Consensus 214 ~~~g~~~~~~~ 224 (303)
T TIGR01288 214 IAEGRPHALID 224 (303)
T ss_pred EEEcCHHHHHh
Confidence 99999988754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=343.11 Aligned_cols=215 Identities=19% Similarity=0.290 Sum_probs=181.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++ ++.+|+||||++++|++++|+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence 478899988763 2469999999999999999999999999999999999876 4689999999875
Q ss_pred Chh------hhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 000913 935 KQE------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 1008 (1226)
Q Consensus 935 ~~~------~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~L 1008 (1226)
... ..++.++|++|++.+++.+||.||+.+...... ..+....++.+.++++.++|.+..+..+ ..|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 421 234569999999988888999999988543211 1233344556788999999988777663 579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 000913 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1226)
Q Consensus 1009 SgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~ 1087 (1226)
|||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|++. ++.+.+|++++|++ |++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i 222 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKI 222 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998765 899999999986 47788999999986 799
Q ss_pred EEeCCC
Q 000913 1088 IYVGPL 1093 (1226)
Q Consensus 1088 ~y~G~~ 1093 (1226)
++.|+.
T Consensus 223 ~~~g~~ 228 (269)
T PRK11831 223 VAHGSA 228 (269)
T ss_pred EEeCCH
Confidence 999874
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=340.00 Aligned_cols=212 Identities=27% Similarity=0.368 Sum_probs=179.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++ ++.+|+|+|+++++|++++|+|||||||||||++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 56788877663 2469999999999999999999999999999999999876 46899999998764
Q ss_pred hhhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 000913 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1015 (1226)
Q Consensus 936 ~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqr 1015 (1226)
. ..+.+||++|++.+++.+||+||+.+....+. ....+..+.+.++++.++|.+..+.. +..||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLAG---VEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHH
Confidence 3 23458999999988888999999988644321 23344456788999999998776665 35799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEec-CcEEEEeCCC
Q 000913 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPL 1093 (1226)
Q Consensus 1016 l~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~H~p~~~i~~~~D~v~ll~~-Gg~~~y~G~~ 1093 (1226)
|+||++|+.+|++|||||||+|||+.++..+++.|+++++ +|+|||+++|++. ++.+.+|++++|++ +|+++..++.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999854 5899999999987 57889999999985 5888888764
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-37 Score=347.44 Aligned_cols=218 Identities=26% Similarity=0.300 Sum_probs=180.9
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++.... ..+.+|+|||++|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~~--------~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKTP--------FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCCc--------ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 678999988852110 11359999999999999999999999999999999999876 46899999998763
Q ss_pred h-------hhhcceeeEeecCCC-CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 000913 936 Q-------ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 1006 (1226)
Q Consensus 936 ~-------~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~ 1006 (1226)
. ..+++.+|||+|++. .+...||+||+.|+.... ..+.++.+++++++++.++|. +..+.. +.
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----PF 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----cc
Confidence 1 235567999999863 233479999999875332 234445556789999999996 556655 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 000913 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1226)
Q Consensus 1007 ~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg 1085 (1226)
.|||||||||+||++|+.+|++|||||||+|||+.++..++++|++++++ |.|||+++|+++ ++.+.+|++++|++ |
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~-G 222 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHK-G 222 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999999764 999999999987 57889999999985 7
Q ss_pred EEEEeCCC
Q 000913 1086 QEIYVGPL 1093 (1226)
Q Consensus 1086 ~~~y~G~~ 1093 (1226)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (290)
T PRK13634 223 TVFLQGTP 230 (290)
T ss_pred EEEEECCH
Confidence 99999974
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=345.69 Aligned_cols=218 Identities=24% Similarity=0.351 Sum_probs=175.2
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCC-------CccceEEEecCCC-C
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHD-N 236 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~-------~~~~~~~yv~Q~d-~ 236 (1226)
.++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++||+|++ .
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 34999999999999999999999999999999999999998 99999999987531 1235799999985 2
Q ss_pred CCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-cccccc
Q 000913 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTM 315 (1226)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1226)
.+...||+||+.|+....+... .+....++.+++.+||+ ...++.
T Consensus 97 ~l~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 142 (290)
T PRK13634 97 QLFEETVEKDICFGPMNFGVSE----------------------------------EDAKQKAREMIELVGLPEELLARS 142 (290)
T ss_pred hhhhhhHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCChhhhhCC
Confidence 4446799999998754322110 01112456788999996 445544
Q ss_pred ccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcE
Q 000913 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1226)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1226)
++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++... .+++|+.++|+..++.+++|+|
T Consensus 143 -----~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~-~g~tviiitHd~~~~~~~~drv 216 (290)
T PRK13634 143 -----PFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKE-KGLTTVLVTHSMEDAARYADQI 216 (290)
T ss_pred -----cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEE
Confidence 4569999999999999999999999999999999999999999999988653 3455666788889999999999
Q ss_pred EEEcCCeEEEecChhHHHH---HHHhcCCCCCC
Q 000913 396 ILLSDGQIVYQGPRELVLE---FFASMGFRCPK 425 (1226)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~---~F~~~Gf~cp~ 425 (1226)
++|++|++++.|+++++.+ .+...|..+|.
T Consensus 217 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (290)
T PRK13634 217 VVMHKGTVFLQGTPREIFADPDELEAIGLDLPE 249 (290)
T ss_pred EEEECCEEEEECCHHHHhcCHHHHHHCCCCCCH
Confidence 9999999999999887642 33444554443
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=331.70 Aligned_cols=208 Identities=32% Similarity=0.477 Sum_probs=175.8
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh
Q 000913 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1226)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1226)
+++|+++.++ ++.+|+|+||++++| +++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 65 (211)
T cd03264 2 QLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLK 65 (211)
T ss_pred EEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCcccc
Confidence 5677777663 246999999999999 999999999999999999999876 468999999987543
Q ss_pred --hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 000913 937 --ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1226)
Q Consensus 937 --~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrq 1014 (1226)
...++.++|++|++.+++.+||.||+.+....+. ...++.++.++++++.+++.+..+..+ ..|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 137 (211)
T cd03264 66 QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRR 137 (211)
T ss_pred chHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHH
Confidence 2345679999999999899999999988655432 223334566889999999987777653 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 000913 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1226)
Q Consensus 1015 rl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G 1091 (1226)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|++. .+.+.+|++++|++ |++++.|
T Consensus 138 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 138 RVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999976 599999999986 46778999999986 6777654
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=390.83 Aligned_cols=253 Identities=24% Similarity=0.328 Sum_probs=195.9
Q ss_pred hHhhHHHHHHhhhccccChHHHHHHHHHHhhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhh
Q 000913 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1226)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1226)
.++....++|+.++++.++|. .. +....+.....|+|+||++.++.
T Consensus 418 ~~~~~~~~~ri~~~l~~~~e~-----~~--~~~~~~~~~~~I~~~nvsf~Y~~--------------------------- 463 (686)
T TIGR03797 418 ILAVIPLWERAKPILEALPEV-----DE--AKTDPGKLSGAIEVDRVTFRYRP--------------------------- 463 (686)
T ss_pred HHHHHHHHHHHHHHhcCCccc-----cc--CcCCCCCCCceEEEEEEEEEcCC---------------------------
Confidence 567788888888887765541 00 00001112347999999999842
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCC
Q 000913 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1226)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1226)
..+++|+|+|++|+||+.++|+||||||||||+|+|+|+++|+ +|+|.+||+++++..+ ++.++||+|+
T Consensus 464 -----~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 535 (686)
T TIGR03797 464 -----DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQN 535 (686)
T ss_pred -----CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccC
Confidence 1134999999999999999999999999999999999999998 9999999999987764 4789999997
Q ss_pred CCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 000913 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1226)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1226)
+.+| +.|++|||.++.. ...+.+.++++. .++ +.. ...|++..||
T Consensus 536 ~~lf-~gTI~eNi~~~~~-----~~~e~i~~al~~---a~l------------------------~~~--i~~lp~G~dt 580 (686)
T TIGR03797 536 GRLM-SGSIFENIAGGAP-----LTLDEAWEAARM---AGL------------------------AED--IRAMPMGMHT 580 (686)
T ss_pred CccC-cccHHHHHhcCCC-----CCHHHHHHHHHH---cCc------------------------HHH--HHhccccccc
Confidence 7655 5799999998642 112222222221 111 111 2246788899
Q ss_pred cccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCc
Q 000913 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1226)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1226)
.+|+.+ .+||||||||++|||||+++|++|+||||||+||+.++..|.+.|+++ ++|+|+ ++|. .++.+.+|+
T Consensus 581 ~ige~G-~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~Ii-ItHr-~~~i~~~D~ 653 (686)
T TIGR03797 581 VISEGG-GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIV-IAHR-LSTIRNADR 653 (686)
T ss_pred cccCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEE-EecC-hHHHHcCCE
Confidence 999876 469999999999999999999999999999999999999999999863 356555 4444 366788999
Q ss_pred EEEEcCCeEEEecChhHHHH
Q 000913 395 IILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1226)
|++|++|+++++|+++++++
T Consensus 654 Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 654 IYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=332.31 Aligned_cols=205 Identities=24% Similarity=0.343 Sum_probs=173.8
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh
Q 000913 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1226)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1226)
+++|+++.++ ++.+|+++||++++|+++||+|||||||||||++|+|... +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (213)
T cd03262 2 EIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTD 66 (213)
T ss_pred EEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCc
Confidence 5677877763 2469999999999999999999999999999999999876 468999999987631
Q ss_pred -----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 000913 937 -----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1226)
Q Consensus 937 -----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgG 1011 (1226)
..+++.++|++|++.+++.+|++||+.+...... ....++.++.++++++.+++.+..++. +..||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 139 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAY-----PAQLSGG 139 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhC-----ccccCHH
Confidence 2345779999999998888999999988643111 123344456788999999998777765 3579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 000913 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1226)
Q Consensus 1012 qrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~G 1084 (1226)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++|
T Consensus 140 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g 211 (213)
T cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDDG 211 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999877999999999986 577889999999864
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=336.47 Aligned_cols=214 Identities=27% Similarity=0.384 Sum_probs=172.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc----cceEEEecCCCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1226)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 14 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 90 (236)
T cd03219 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPEL 90 (236)
T ss_pred EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccCC
Confidence 4999999999999999999999999999999999999988 9999999998765432 24699999999999999
Q ss_pred CHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 000913 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1226)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1226)
||+||+.++....+... ..+. . .. ....+....++.+++.+||++..++.+
T Consensus 91 tv~~~l~~~~~~~~~~~-------~~~~-~-----~~-----------~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (236)
T cd03219 91 TVLENVMVAAQARTGSG-------LLLA-R-----AR-----------REEREARERAEELLERVGLADLADRPA----- 141 (236)
T ss_pred CHHHHHHHHHhhccccc-------cccc-c-----cc-----------ccHHHHHHHHHHHHHHcCccchhhCCh-----
Confidence 99999998754321000 0000 0 00 000011234577889999987666544
Q ss_pred CCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCC
Q 000913 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1226)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1226)
+.|||||||||+||++|+.+|++++|||||+|||..++..+.+.|+++.. .+. +|+.++|+..++.+++|+|++|++|
T Consensus 142 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~-tii~vsH~~~~~~~~~d~i~~l~~G 219 (236)
T cd03219 142 GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGI-TVLLVEHDMDVVMSLADRVTVLDQG 219 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCC-EEEEEecCHHHHHHhCCEEEEEeCC
Confidence 46999999999999999999999999999999999999999999998764 444 4556778888999999999999999
Q ss_pred eEEEecChhHHH
Q 000913 402 QIVYQGPRELVL 413 (1226)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1226)
++++.|+++++.
T Consensus 220 ~i~~~~~~~~~~ 231 (236)
T cd03219 220 RVIAEGTPDEVR 231 (236)
T ss_pred EEEeecCHHHhc
Confidence 999999988763
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=346.07 Aligned_cols=217 Identities=25% Similarity=0.347 Sum_probs=181.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++... ...+.+|+|||++|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 i~~~~v~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPNS--------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 67899998885210 011359999999999999999999999999999999999876 56899999998763
Q ss_pred h-------hhhcceeeEeecCC--CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCC
Q 000913 936 Q-------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 1005 (1226)
Q Consensus 936 ~-------~~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~ 1005 (1226)
. ..+++.+|||+|++ .+++ .||.|++.|..... ..+.++.++++.++++.++|. ++.++. +
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~ 142 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----P 142 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----c
Confidence 1 23567799999986 3444 69999999875432 234455667789999999996 455554 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 000913 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1226)
Q Consensus 1006 ~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg 1085 (1226)
..||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.||++++|++ |
T Consensus 143 ~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G 220 (288)
T PRK13643 143 FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-G 220 (288)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999877999999999986 47788999999986 7
Q ss_pred EEEEeCCC
Q 000913 1086 QEIYVGPL 1093 (1226)
Q Consensus 1086 ~~~y~G~~ 1093 (1226)
++++.|+.
T Consensus 221 ~i~~~g~~ 228 (288)
T PRK13643 221 HIISCGTP 228 (288)
T ss_pred EEEEECCH
Confidence 99999985
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=348.10 Aligned_cols=218 Identities=25% Similarity=0.309 Sum_probs=181.2
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
+.++|+++.++... .....+|+|||++|++||++||+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKKL--------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL--PDTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCCC--------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEEeceecc
Confidence 67899998885211 011358999999999999999999999999999999999876 45799999886531
Q ss_pred ---------------------------hhhhcceeeEeecCC-CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 000913 936 ---------------------------QETFARISGYCEQND-IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 987 (1226)
Q Consensus 936 ---------------------------~~~~~~~~gyv~Q~~-~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l 987 (1226)
....++.+|||+|++ ..+...||+|++.|+.... ..+.++.++++.+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 123456799999985 2334579999999875432 234556667889999
Q ss_pred HHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 000913 988 ELVELN-PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1066 (1226)
Q Consensus 988 ~~l~l~-~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~ 1066 (1226)
+.++|. +..++. +..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|+
T Consensus 150 ~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 566665 45799999999999999999999999999999999999999999999998779999999999
Q ss_pred CcHHHHHhcCeEEEEecCcEEEEeCCC
Q 000913 1067 PSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1067 p~~~i~~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
+. .+.+.+|++++|++ |++++.|+.
T Consensus 225 ~~-~~~~~adrv~vl~~-G~i~~~g~~ 249 (305)
T PRK13651 225 LD-NVLEWTKRTIFFKD-GKIIKDGDT 249 (305)
T ss_pred HH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 86 47889999999986 689999975
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=335.27 Aligned_cols=205 Identities=30% Similarity=0.400 Sum_probs=171.9
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc------cceEEEecCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNHIG 239 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~~~~ 239 (1226)
++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 5999999999999999999999999999999999999998 9999999998765321 357999999998899
Q ss_pred CCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 000913 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1226)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1226)
.+||+||+.+.....+... ......++.+++.+||++..+..+
T Consensus 96 ~~t~~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 138 (233)
T cd03258 96 SRTVFENVALPLEIAGVPK----------------------------------AEIEERVLELLELVGLEDKADAYP--- 138 (233)
T ss_pred CCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhhhhcCh---
Confidence 9999999988654322100 001123566788999987666544
Q ss_pred ccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEc
Q 000913 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1226)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1226)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+..++.+++|++++|+
T Consensus 139 --~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tvii~sH~~~~~~~~~d~i~~l~ 215 (233)
T cd03258 139 --AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINREL-GLTIVLITHEMEVVKRICDRVAVME 215 (233)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 4699999999999999999999999999999999999999999999876532 4455557778888999999999999
Q ss_pred CCeEEEecChhHHH
Q 000913 400 DGQIVYQGPRELVL 413 (1226)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1226)
+|++++.|+.+++.
T Consensus 216 ~G~i~~~~~~~~~~ 229 (233)
T cd03258 216 KGEVVEEGTVEEVF 229 (233)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999887653
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=343.90 Aligned_cols=224 Identities=27% Similarity=0.381 Sum_probs=180.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCC-------CccceEEEecCCC-CC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHD-NH 237 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~-------~~~~~~~yv~Q~d-~~ 237 (1226)
.+|+|||+.|++|++++|+||||||||||+++|+|.++|+ +|+|+++|.++... ..++.++||+|++ ..
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 4999999999999999999999999999999999999998 99999999987521 1235799999985 24
Q ss_pred CCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-ccccccc
Q 000913 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMV 316 (1226)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 316 (1226)
+...||.||+.|+....+... .+....+..+++.+||. ...++
T Consensus 97 l~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~-- 140 (288)
T PRK13643 97 LFEETVLKDVAFGPQNFGIPK----------------------------------EKAEKIAAEKLEMVGLADEFWEK-- 140 (288)
T ss_pred cccchHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhccC--
Confidence 445799999999764432110 01122456778899995 34443
Q ss_pred cccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEE
Q 000913 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1226)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1226)
.++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.. . +.+|+.++|+..++.+++|+|+
T Consensus 141 ---~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~til~vtHd~~~~~~~~dri~ 215 (288)
T PRK13643 141 ---SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-S-GQTVVLVTHLMDDVADYADYVY 215 (288)
T ss_pred ---CcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEE
Confidence 3557999999999999999999999999999999999999999999998754 3 4456667888899999999999
Q ss_pred EEcCCeEEEecChhHHH---HHHHhcCCCCCCCCChHHHH
Q 000913 397 LLSDGQIVYQGPRELVL---EFFASMGFRCPKRKGVADFL 433 (1226)
Q Consensus 397 lL~~G~iv~~G~~~~~~---~~F~~~Gf~cp~~~~~adfl 433 (1226)
+|++|+++++|+++++. ++++..|+.+|.....++.+
T Consensus 216 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 216 LLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred EEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 99999999999999874 34556777776655444433
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=330.48 Aligned_cols=199 Identities=30% Similarity=0.418 Sum_probs=167.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-cceEEEecCCCCCCCCCCHH
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1226)
++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+
T Consensus 14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (213)
T cd03301 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVY 90 (213)
T ss_pred eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCHH
Confidence 4999999999999999999999999999999999999988 9999999998754432 35799999998888899999
Q ss_pred HHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 000913 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1226)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1226)
||+.++.+..+... .+....++.+++.+||++..+..+ +.|
T Consensus 91 ~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 131 (213)
T cd03301 91 DNIAFGLKLRKVPK----------------------------------DEIDERVREVAELLQIEHLLDRKP-----KQL 131 (213)
T ss_pred HHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhCCh-----hhC
Confidence 99988654322100 001123566788999987776655 469
Q ss_pred ChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEE
Q 000913 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1226)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1226)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++...+. +|+.++|+..++.+++|+|++|++|+++
T Consensus 132 S~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~-tvi~~sH~~~~~~~~~d~i~~l~~g~~~ 210 (213)
T cd03301 132 SGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGT-TTIYVTHDQVEAMTMADRIAVMNDGQIQ 210 (213)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988653344 4555778888999999999999999999
Q ss_pred Eec
Q 000913 405 YQG 407 (1226)
Q Consensus 405 ~~G 407 (1226)
+.|
T Consensus 211 ~~g 213 (213)
T cd03301 211 QIG 213 (213)
T ss_pred ecC
Confidence 876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=338.97 Aligned_cols=215 Identities=20% Similarity=0.259 Sum_probs=181.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence 478899988774 2469999999999999999999999999999999999876 4679999999765
Q ss_pred Ch----------------hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCccc-c
Q 000913 935 KQ----------------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-Q 997 (1226)
Q Consensus 935 ~~----------------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-~ 997 (1226)
.. ..+++.++|++|++.+++.+||+||+.+...... .....+.++++.++++.+++.+.. +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~ 147 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQG 147 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 31 2345679999999999989999999987542111 123444566788999999997753 4
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCe
Q 000913 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1077 (1226)
Q Consensus 998 ~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~ 1077 (1226)
.. +..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.||+
T Consensus 148 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~ 221 (257)
T PRK10619 148 KY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 221 (257)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 43 4579999999999999999999999999999999999999999999999877999999999987 47778999
Q ss_pred EEEEecCcEEEEeCCC
Q 000913 1078 LFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1078 v~ll~~Gg~~~y~G~~ 1093 (1226)
+++|++ |++++.|+.
T Consensus 222 i~~l~~-G~i~~~~~~ 236 (257)
T PRK10619 222 VIFLHQ-GKIEEEGAP 236 (257)
T ss_pred EEEEEC-CEEEEeCCH
Confidence 999986 789998874
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=333.51 Aligned_cols=199 Identities=27% Similarity=0.421 Sum_probs=165.1
Q ss_pred eEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCChhhhcceeeEeecCCCCC--CCCCH
Q 000913 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS--PFVTI 958 (1226)
Q Consensus 881 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~--~~lTv 958 (1226)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+.. ..++.++|++|++.+. ..+||
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 469999999999999999999999999999999999876 46899999998653 3456799999998763 33799
Q ss_pred HHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000913 959 YESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1037 (1226)
Q Consensus 959 ~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsg 1037 (1226)
+||+.+....... .....+..++.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9999875432110 00112233456889999999987776653 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 000913 1038 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1226)
Q Consensus 1038 LD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G 1091 (1226)
||+.++..+++.|++++++|+|||++||+++ ++.+.+|++++|++ | +++.|
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 9999999999999999878999999999987 47788999999975 4 56554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=313.06 Aligned_cols=206 Identities=30% Similarity=0.444 Sum_probs=175.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCcc---ceEEEecCCCCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYISQHDNHIGEMT 242 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~~---~~~~yv~Q~d~~~~~lT 242 (1226)
.+|++||++++||||++|+||||||||||||+|+|.+.|+ +|+|++||.+++.+.+. +.-+.++|+..+-+..|
T Consensus 15 ~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFt 91 (259)
T COG4559 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFT 91 (259)
T ss_pred eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceE
Confidence 4999999999999999999999999999999999999998 99999999999888764 56789999988877889
Q ss_pred HHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 000913 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1226)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1226)
|+|-+.+++.-.+.+.. ..+...+++.+|...++.+.+. +..+
T Consensus 92 v~eVV~mGr~p~~~g~~--------------------------------~~e~~~i~~~ala~~d~~~la~-----R~y~ 134 (259)
T COG4559 92 VQEVVQMGRIPHRSGRE--------------------------------PEEDERIAAQALAATDLSGLAG-----RDYR 134 (259)
T ss_pred HHHHHHhcccccccCCC--------------------------------chhhHHHHHHHHHHcChhhhhc-----cchh
Confidence 99999998754322111 0012234666777778877665 3456
Q ss_pred CCChhHhhHHHHHHHHhc------CCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEE
Q 000913 323 GISGGQKKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1226)
Q Consensus 323 ~LSGGqrqRvsia~al~~------~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1226)
.|||||||||.+||.|+. ++++||||||||+||......+++..|++++. + ..|+++.|+..-+..++|+|+
T Consensus 135 ~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g-~~V~~VLHDLNLAA~YaDriv 212 (259)
T COG4559 135 TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-G-GAVLAVLHDLNLAAQYADRIV 212 (259)
T ss_pred hcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-C-CcEEEEEccchHHHHhhheee
Confidence 799999999999999985 44689999999999999999999999999974 3 566678899999999999999
Q ss_pred EEcCCeEEEecChhHHH
Q 000913 397 LLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1226)
+|.+||++..|++++++
T Consensus 213 ll~~Grv~a~g~p~~vl 229 (259)
T COG4559 213 LLHQGRVIASGSPQDVL 229 (259)
T ss_pred eeeCCeEeecCCHHHhc
Confidence 99999999999999875
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=332.87 Aligned_cols=208 Identities=24% Similarity=0.317 Sum_probs=175.5
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++ +++.+|+|+|+++++|+++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 56788887763 12369999999999999999999999999999999999876 56899999998653
Q ss_pred h---h---hhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 000913 936 Q---E---TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1226)
Q Consensus 936 ~---~---~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LS 1009 (1226)
. . .+++.++|++|++.+++.+|++||+.+....+ ..+.++..+.++++++.+++.+..++. +..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----chhCC
Confidence 2 1 24567999999998888899999998865433 123344455678899999998776665 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 000913 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1226)
Q Consensus 1010 gGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~ 1087 (1226)
||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++|.|||+++|+++ ++.+.+|++++|++ |++
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i 215 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSD-GHL 215 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999777899999999987 47778999999986 554
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=334.78 Aligned_cols=217 Identities=24% Similarity=0.280 Sum_probs=173.0
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
+.++|+++.++... ....+|+|+|+++++||++||+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~~---------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTGG---------GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCCC---------cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 56788887764110 01369999999999999999999999999999999999876 46899999998764
Q ss_pred h------hhhcceeeEeecCC--CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 000913 936 Q------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 1006 (1226)
Q Consensus 936 ~------~~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~ 1006 (1226)
. ..+++.++|++|++ .+.+.+||+||+.+........ ...+..+..++++++.+++. ...+.. +.
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 144 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL-SKKEARKEAVLLLLVGVGLPEEVLNRY-----PH 144 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHCCCChhHhhCC-----ch
Confidence 3 23456799999998 4567899999998865433211 11111122235788999985 455554 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 000913 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1226)
Q Consensus 1007 ~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg 1085 (1226)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.+|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G 222 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-G 222 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-C
Confidence 79999999999999999999999999999999999999999999999765 899999999986 46778999999986 6
Q ss_pred EEEEeC
Q 000913 1086 QEIYVG 1091 (1226)
Q Consensus 1086 ~~~y~G 1091 (1226)
+++..|
T Consensus 223 ~i~~~g 228 (228)
T cd03257 223 KIVEEG 228 (228)
T ss_pred EEEecC
Confidence 777654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=332.47 Aligned_cols=194 Identities=25% Similarity=0.374 Sum_probs=163.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC------ccceEEEecCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (1226)
++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLS 93 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCccccc
Confidence 4999999999999999999999999999999999999998 999999999875432 2357999999998899
Q ss_pred CCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 000913 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1226)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1226)
.+||+||+.++.+..+... .+....++.+++.+||++..+..+
T Consensus 94 ~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 136 (216)
T TIGR00960 94 DRTVYDNVAFPLRIIGVPP----------------------------------RDANERVSAALEKVGLEGKAHALP--- 136 (216)
T ss_pred cccHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh---
Confidence 9999999998754322100 001123566788999987666554
Q ss_pred ccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEc
Q 000913 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1226)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1226)
..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.. .+ ++|+.++|+..++..++|+|++|+
T Consensus 137 --~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~vsH~~~~~~~~~d~i~~l~ 212 (216)
T TIGR00960 137 --MQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RG-TTVLVATHDINLVETYRHRTLTLS 212 (216)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEEe
Confidence 46999999999999999999999999999999999999999999998754 34 455667888889999999999999
Q ss_pred CCeE
Q 000913 400 DGQI 403 (1226)
Q Consensus 400 ~G~i 403 (1226)
+|++
T Consensus 213 ~G~i 216 (216)
T TIGR00960 213 RGRL 216 (216)
T ss_pred CCcC
Confidence 9975
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=337.27 Aligned_cols=214 Identities=27% Similarity=0.381 Sum_probs=181.1
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++ ++.+|+|+|+++++|+++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (241)
T PRK10895 4 LTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDIS 68 (241)
T ss_pred EEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 67788887763 2469999999999999999999999999999999999876 56899999998753
Q ss_pred h----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 000913 936 Q----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1226)
Q Consensus 936 ~----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgG 1011 (1226)
. ...++.++|++|++.+++.+||+||+.+...++. ..+.++.+..++++++.+++.+..+.. +..||||
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 141 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGG 141 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHH
Confidence 2 1234679999999988888999999987643221 123334456788999999998766655 3579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 000913 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1226)
Q Consensus 1012 qrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G 1091 (1226)
|||||+||++|+.+|++|+|||||+|||+.++..+.+.++++.++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~ 219 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAHG 219 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEeeC
Confidence 999999999999999999999999999999999999999998877999999999986 58889999999986 6899888
Q ss_pred CC
Q 000913 1092 PL 1093 (1226)
Q Consensus 1092 ~~ 1093 (1226)
+.
T Consensus 220 ~~ 221 (241)
T PRK10895 220 TP 221 (241)
T ss_pred CH
Confidence 75
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=343.99 Aligned_cols=215 Identities=26% Similarity=0.381 Sum_probs=182.3
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++. ++.+|+|||++|++||++||+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~~------------~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYSD------------GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeCC------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEEC
Confidence 5889999988741 2459999999999999999999999999999999999876 5689999999876
Q ss_pred C-----hhhhcceeeEeecCCC-CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 000913 935 K-----QETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 1008 (1226)
Q Consensus 935 ~-----~~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~L 1008 (1226)
. ...+++.+||++|++. .+...||+||+.+..... ..+.++.+++++++++.++|.+..++. +..|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----cccC
Confidence 3 1235567999999974 234579999998864322 234445556789999999998877776 4579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 000913 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1226)
Q Consensus 1009 SgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~ 1087 (1226)
|||||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.||++++|++ |++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i 220 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRV 220 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999765 899999999987 46778999999986 689
Q ss_pred EEeCCC
Q 000913 1088 IYVGPL 1093 (1226)
Q Consensus 1088 ~y~G~~ 1093 (1226)
++.|+.
T Consensus 221 ~~~g~~ 226 (283)
T PRK13636 221 ILQGNP 226 (283)
T ss_pred EEeCCH
Confidence 999985
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=336.75 Aligned_cols=214 Identities=23% Similarity=0.311 Sum_probs=178.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCc---eEEEEEEEcCc
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISGY 932 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g~ 932 (1226)
++++|+++.++ +..+|+|+|+++++||+++|+|+|||||||||++|+|...+. ..+|+|.++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 56788887763 235899999999999999999999999999999999987521 12899999998
Q ss_pred cCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCC----cccccccCCC
Q 000913 933 PKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSLVGLP 1003 (1226)
Q Consensus 933 ~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~~g~~ 1003 (1226)
+... ...++.++|++|++.+++ .|++||+.+....+. ..+.++.++.++++++.++|. +..+..
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 141 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS---- 141 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC----
Confidence 7642 234567999999988888 999999998654331 123344456788999999997 444444
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 000913 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1226)
Q Consensus 1004 ~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~ 1083 (1226)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||+++|++. ++.+.+|++++|++
T Consensus 142 -~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~ 218 (247)
T TIGR00972 142 -ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD 218 (247)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999876 489999999986 47788999999986
Q ss_pred CcEEEEeCCC
Q 000913 1084 GGQEIYVGPL 1093 (1226)
Q Consensus 1084 Gg~~~y~G~~ 1093 (1226)
|++++.|+.
T Consensus 219 -G~i~~~~~~ 227 (247)
T TIGR00972 219 -GELVEYGPT 227 (247)
T ss_pred -CEEEEeCCH
Confidence 689988874
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=330.80 Aligned_cols=201 Identities=29% Similarity=0.397 Sum_probs=168.3
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCCCHH
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1226)
+++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .++.++||+|++.+++.+||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~ 91 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVL 91 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHH
Confidence 45999999999999999999999999999999999999988 9999999988753 246799999998888889999
Q ss_pred HHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 000913 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1226)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1226)
||+.++....+... ......++.+++.+||++..+..+ ..|
T Consensus 92 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 132 (220)
T cd03293 92 DNVALGLELQGVPK----------------------------------AEARERAEELLELVGLSGFENAYP-----HQL 132 (220)
T ss_pred HHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCc-----ccC
Confidence 99998754322100 001123567888999987666554 469
Q ss_pred ChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEc--CCe
Q 000913 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS--DGQ 402 (1226)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~--~G~ 402 (1226)
|||||||++||+||+.+|+++||||||+|||+.++..+.+.|+++....+ ++|+.++|+..++.+++|++++|+ +|+
T Consensus 133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~-~tiii~sH~~~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETG-KTVLLVTHDIDEAVFLADRVVVLSARPGR 211 (220)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcC-CEEEEEecCHHHHHHhCCEEEEEECCCCE
Confidence 99999999999999999999999999999999999999999998754334 455557788888999999999999 799
Q ss_pred EEEecChh
Q 000913 403 IVYQGPRE 410 (1226)
Q Consensus 403 iv~~G~~~ 410 (1226)
+++.++.+
T Consensus 212 i~~~~~~~ 219 (220)
T cd03293 212 IVAEVEVD 219 (220)
T ss_pred EEEEEEec
Confidence 99988653
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=348.75 Aligned_cols=218 Identities=25% Similarity=0.342 Sum_probs=181.4
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++... ...+.+|+|||++|++|+++||+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 21 ~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEc
Confidence 589999999885210 012359999999999999999999999999999999999876 5689999999765
Q ss_pred Ch-------------------hhhcceeeEeecCC--CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCC
Q 000913 935 KQ-------------------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 993 (1226)
Q Consensus 935 ~~-------------------~~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~ 993 (1226)
.. ..+++.+|||+|++ .+++ .||+||+.|+.... ..+.++..+++.++++.++|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 23567799999987 3454 59999998864322 234445556788999999996
Q ss_pred -cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHH
Q 000913 994 -PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1072 (1226)
Q Consensus 994 -~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~ 1072 (1226)
+..+.. +..|||||||||+|||+|+.+|+||+|||||+|||+.++..+++.|+++.++|+|||++||+++ ++.
T Consensus 167 ~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 455554 4579999999999999999999999999999999999999999999999877999999999986 477
Q ss_pred HhcCeEEEEecCcEEEEeCCC
Q 000913 1073 EAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1073 ~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
+.+|++++|++ |+++..|+.
T Consensus 241 ~~adri~vl~~-G~i~~~g~~ 260 (320)
T PRK13631 241 EVADEVIVMDK-GKILKTGTP 260 (320)
T ss_pred HhCCEEEEEEC-CEEEEeCCH
Confidence 88999999986 799999975
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=333.72 Aligned_cols=204 Identities=22% Similarity=0.369 Sum_probs=171.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc----cceEEEecCCCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1226)
.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (232)
T cd03218 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKL 90 (232)
T ss_pred EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCccccccC
Confidence 4999999999999999999999999999999999999998 9999999998754332 24699999999899999
Q ss_pred CHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 000913 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1226)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1226)
||+||+.+.....+... .+....++.+++.+||++..++.+
T Consensus 91 tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 131 (232)
T cd03218 91 TVEENILAVLEIRGLSK----------------------------------KEREEKLEELLEEFHITHLRKSKA----- 131 (232)
T ss_pred cHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh-----
Confidence 99999988643221100 001123567888999987666554
Q ss_pred CCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCC
Q 000913 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1226)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1226)
+.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. .+ ++||.++|+..++.+++|+|++|++|
T Consensus 132 ~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~-~tii~~sH~~~~~~~~~d~i~~l~~G 209 (232)
T cd03218 132 SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RG-IGVLITDHNVRETLSITDRAYIIYEG 209 (232)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998764 34 45566778888999999999999999
Q ss_pred eEEEecChhHHH
Q 000913 402 QIVYQGPRELVL 413 (1226)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1226)
++++.|+.+++.
T Consensus 210 ~i~~~~~~~~~~ 221 (232)
T cd03218 210 KVLAEGTPEEIA 221 (232)
T ss_pred eEEEEeCHHHhh
Confidence 999999987653
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=331.54 Aligned_cols=193 Identities=26% Similarity=0.380 Sum_probs=164.2
Q ss_pred eEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh---hhhcceeeEeecCCC-CCCCC
Q 000913 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDI-HSPFV 956 (1226)
Q Consensus 881 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~-~~~~l 956 (1226)
+.+|+|+||++++|+++||+||||||||||+++|+|... +.+|+|.++|.+... ..+++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 469999999999999999999999999999999999876 468999999986532 234567999999974 35678
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000913 957 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1036 (1226)
Q Consensus 957 Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTs 1036 (1226)
|++||+.+....+ .....+.++.++++++.++|.+..++.+ ..|||||||||+||++|+.+|++|+|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998864332 1223344456888999999987766653 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 000913 1037 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1226)
Q Consensus 1037 gLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~G 1084 (1226)
|||+.++..+++.|++++++|+|||++||++. ++...||++++|++|
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G 210 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999877999999999986 577789999999864
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=322.69 Aligned_cols=206 Identities=27% Similarity=0.378 Sum_probs=181.3
Q ss_pred CceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCChh----hhcceeeEeecCCCCCC
Q 000913 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE----TFARISGYCEQNDIHSP 954 (1226)
Q Consensus 879 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~~~~~ 954 (1226)
+...+++|||+++++||++||+||||||||||+|+|+|..+ +..|+|.++|.++... ..+..++.-+|...+|+
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~ 92 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFP 92 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccCCCCHHHHHhccceeecccccccC
Confidence 56789999999999999999999999999999999999887 5689999999987542 23456889999999999
Q ss_pred CCCHHHHHHHHHHhhc--------CCC-CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhC
Q 000913 955 FVTIYESLLFSAWLRL--------SPE-VDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVAN 1025 (1226)
Q Consensus 955 ~lTv~E~l~f~~~lr~--------~~~-~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~ 1025 (1226)
.|||.||+..++..+. +.. ...++..+++.++|+.+||.+.++...| +||+||||||.|||||+.+
T Consensus 93 ~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa~~ 167 (250)
T COG0411 93 GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQ 167 (250)
T ss_pred CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHhcC
Confidence 9999999998765331 111 1245566778999999999999999865 5999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 000913 1026 PSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1026 p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
|++|+||||.+||.+.....+.+.|+++.+ .|.||+++-|+++. ++.+||||++|+. |+++..|++
T Consensus 168 P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~-Vm~l~dri~Vl~~-G~~IAeG~P 234 (250)
T COG0411 168 PKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL-VMGLADRIVVLNY-GEVIAEGTP 234 (250)
T ss_pred CCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH-HhhhccEEEeccC-CcCcccCCH
Confidence 999999999999999999999999999987 47999999999985 9999999999986 799999986
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-37 Score=356.19 Aligned_cols=254 Identities=27% Similarity=0.394 Sum_probs=195.4
Q ss_pred hhHHHHHHhhhccccChHHHHHHHHHHhhh-cCCCCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhhc
Q 000913 80 ERQRLIDKLVKVTDVDNERFLLKLKNRIDR-VGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRII 158 (1226)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 158 (1226)
...+..|+++...+.+++. ...-.. .-...|.++++.+||+|.++.
T Consensus 286 ~g~aa~d~i~~~l~~~~~~-----~~~~~~~~~~~~~~~ei~~~~l~~~y~~---------------------------- 332 (559)
T COG4988 286 AGEAAADKLFTLLESPVAT-----PGSGEKAEVANEPPIEISLENLSFRYPD---------------------------- 332 (559)
T ss_pred hhhhHHHHHHHHhcCCCCC-----CCCccccccccCCCceeeecceEEecCC----------------------------
Confidence 4456666666666655541 111111 122346889999999999853
Q ss_pred CCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCC
Q 000913 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD 235 (1226)
Q Consensus 159 ~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d 235 (1226)
. +++++|+|++++||+.++|+|+||||||||+++|+|+++|+ +|+|.+||.+..+..+ +++++||+|++
T Consensus 333 --g---~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p 404 (559)
T COG4988 333 --G---KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNP 404 (559)
T ss_pred --C---CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCC
Confidence 1 15899999999999999999999999999999999999998 9999999999877754 58999999987
Q ss_pred CCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccc
Q 000913 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1226)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1226)
.++ ..|+||||.++.. ....+.+.++.++. .+.+.+.-+...||.
T Consensus 405 ~lf-~gTireNi~l~~~----~~s~e~i~~al~~a------------------------------~l~~~v~~p~GLdt~ 449 (559)
T COG4988 405 YLF-AGTIRENILLARP----DASDEEIIAALDQA------------------------------GLLEFVPKPDGLDTV 449 (559)
T ss_pred ccc-cccHHHHhhccCC----cCCHHHHHHHHHHh------------------------------cHHHhhcCCCcccch
Confidence 555 5799999998752 12222222222111 112233336678999
Q ss_pred ccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcE
Q 000913 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1226)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1226)
+|+.+ ++|||||+|||++||||+.+++++++||||++||.+|+..|.+.|.++++ ++|++++ +| +.+...-+|+|
T Consensus 450 ige~G-~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~i-tH-rl~~~~~~D~I 524 (559)
T COG4988 450 IGEGG-AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVI-TH-RLEDAADADRI 524 (559)
T ss_pred hccCC-CCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEE-Ec-ChHHHhcCCEE
Confidence 99865 47999999999999999999999999999999999999999999999864 4565554 44 46777889999
Q ss_pred EEEcCCeEEEecChhHHHH
Q 000913 396 ILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1226)
++|++|+++++|.++++.+
T Consensus 525 ~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 525 VVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred EEecCCceeccCCHHHHhh
Confidence 9999999999999999853
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=323.58 Aligned_cols=221 Identities=28% Similarity=0.401 Sum_probs=188.1
Q ss_pred ccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCcc----ceEEEecCCCCCC
Q 000913 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHI 238 (1226)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~ 238 (1226)
....+++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|++++...+. .-++--+|...+|
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF 91 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQITRLF 91 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeeccccccc
Confidence 4567999999999999999999999999999999999999999 99999999999888764 4578899999999
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 000913 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1226)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1226)
++|||.||+..++..+.. .. .. +... ....+..+....+..+|+.+||.+.+|+..|+
T Consensus 92 ~~lTVlENv~va~~~~~~---~~---~~--------l~~~--------~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~ 149 (250)
T COG0411 92 PGLTVLENVAVGAHARLG---LS---GL--------LGRP--------RARKEEREARERARELLEFVGLGELADRPAGN 149 (250)
T ss_pred CCCcHHHHHHHHhhhhhh---hh---hh--------hccc--------cchhhHHHHHHHHHHHHHHcCCchhhcchhhc
Confidence 999999999998754421 00 00 0000 00001123345678899999999999998875
Q ss_pred cccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEE
Q 000913 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1226)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1226)
||+||+||+.|||||+.+|++|+||||.+||.+..+.++.+.|+++.+ .++++|+.+-|++.-++.+||+|+||
T Consensus 150 -----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~-~~g~tillIEHdM~~Vm~l~dri~Vl 223 (250)
T COG0411 150 -----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD-RGGVTILLIEHDMKLVMGLADRIVVL 223 (250)
T ss_pred -----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEEeccHHHhhhccEEEec
Confidence 999999999999999999999999999999999999999999999875 45577777999999999999999999
Q ss_pred cCCeEEEecChhHHHH
Q 000913 399 SDGQIVYQGPRELVLE 414 (1226)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1226)
+.|+++.+|+++++.+
T Consensus 224 ~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 224 NYGEVIAEGTPEEVRN 239 (250)
T ss_pred cCCcCcccCCHHHHhc
Confidence 9999999999999864
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=344.62 Aligned_cols=204 Identities=27% Similarity=0.396 Sum_probs=175.4
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC--ccceEEEecCCCCCCCCCCH
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 243 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1226)
.+|+|+||.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||
T Consensus 16 ~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv 92 (301)
T TIGR03522 16 NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYV 92 (301)
T ss_pred EEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcH
Confidence 4999999999999999999999999999999999999998 999999998875422 23679999999999999999
Q ss_pred HHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 000913 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1226)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1226)
+||+.|.+++.+... ++....++.+++.+||++..++.++ .
T Consensus 93 ~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 133 (301)
T TIGR03522 93 REYLQFIAGIYGMKG----------------------------------QLLKQRVEEMIELVGLRPEQHKKIG-----Q 133 (301)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCchh-----h
Confidence 999998765543110 0011235678999999988776654 6
Q ss_pred CChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeE
Q 000913 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1226)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1226)
|||||||||+||+||+++|++|||||||+|||+.++..+.+.|+++. .+ ++|+.++|...++.++||+|++|++|++
T Consensus 134 LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~--~~-~tiii~sH~l~~~~~~~d~i~~l~~G~i 210 (301)
T TIGR03522 134 LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG--KD-KTIILSTHIMQEVEAICDRVIIINKGKI 210 (301)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc--CC-CEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999874 34 5566678889999999999999999999
Q ss_pred EEecChhHHHH
Q 000913 404 VYQGPRELVLE 414 (1226)
Q Consensus 404 v~~G~~~~~~~ 414 (1226)
++.|+.+++..
T Consensus 211 ~~~g~~~~~~~ 221 (301)
T TIGR03522 211 VADKKLDELSA 221 (301)
T ss_pred EEeCCHHHHHH
Confidence 99999998754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=344.58 Aligned_cols=217 Identities=22% Similarity=0.326 Sum_probs=180.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++.... ..+.+|+|||++|++||++||+|+||||||||+++|+|... +..|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~~--------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i~ 72 (286)
T PRK13646 3 IRFDNVSYTYQKGTP--------YEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITIT 72 (286)
T ss_pred EEEEEEEEEECCCCc--------cccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 678999988852110 12359999999999999999999999999999999999876 56899999998763
Q ss_pred h-------hhhcceeeEeecCC--CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCC
Q 000913 936 Q-------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 1005 (1226)
Q Consensus 936 ~-------~~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~ 1005 (1226)
. ..+++.+|||+|++ .+++ .||.||+.|..... ..+.++..+++.++++.+||. +..++. +
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 143 (286)
T PRK13646 73 HKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS-----P 143 (286)
T ss_pred cccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----c
Confidence 2 23567799999986 3444 59999999864332 234455567789999999996 566654 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 000913 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1226)
Q Consensus 1006 ~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~H~p~~~i~~~~D~v~ll~~G 1084 (1226)
..||||||||++||++|+.+|+||+|||||+|||+.++..+++.|+++.+ .|+|||+++|+++ ++.+.+|++++|++
T Consensus 144 ~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~- 221 (286)
T PRK13646 144 FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE- 221 (286)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 57999999999999999999999999999999999999999999999975 4899999999987 47789999999986
Q ss_pred cEEEEeCCC
Q 000913 1085 GQEIYVGPL 1093 (1226)
Q Consensus 1085 g~~~y~G~~ 1093 (1226)
|++++.|+.
T Consensus 222 G~i~~~g~~ 230 (286)
T PRK13646 222 GSIVSQTSP 230 (286)
T ss_pred CEEEEECCH
Confidence 799999874
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=333.86 Aligned_cols=203 Identities=25% Similarity=0.367 Sum_probs=167.9
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC-----CCCCCceeEEEEcCccCCCCC-----ccceEEEecCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL-----DPTLKVSGTVTYNGHDMDEFV-----PQRTAAYISQHD 235 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~-----~~~~~~~G~I~~nG~~~~~~~-----~~~~~~yv~Q~d 235 (1226)
++|+|+|+++++|++++|+|||||||||||++|+|.+ +|+ +|+|.++|.++.... .++.++|++|++
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 90 (227)
T cd03260 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKP 90 (227)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecCc
Confidence 4999999999999999999999999999999999999 777 999999999875432 235799999998
Q ss_pred CCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccc
Q 000913 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1226)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1226)
.++ .+||+||+.++....+.... .+....++.+++.+||.+..+..
T Consensus 91 ~~~-~~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~ 136 (227)
T cd03260 91 NPF-PGSIYDNVAYGLRLHGIKLK---------------------------------EELDERVEEALRKAALWDEVKDR 136 (227)
T ss_pred hhc-cccHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCChHHhcc
Confidence 777 89999999987543221000 00112356678899998765544
Q ss_pred ccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcE
Q 000913 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1226)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1226)
+. +..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ . ++||.++|+..++.+++|+|
T Consensus 137 ~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i 210 (227)
T cd03260 137 LH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--E-YTIVIVTHNMQQAARVADRT 210 (227)
T ss_pred CC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh--C-cEEEEEeccHHHHHHhCCEE
Confidence 20 357999999999999999999999999999999999999999999998754 3 55666788888999999999
Q ss_pred EEEcCCeEEEecChhH
Q 000913 396 ILLSDGQIVYQGPREL 411 (1226)
Q Consensus 396 ilL~~G~iv~~G~~~~ 411 (1226)
++|++|++++.|++++
T Consensus 211 ~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 211 AFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEeCCEEEEecCccc
Confidence 9999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=354.17 Aligned_cols=256 Identities=22% Similarity=0.308 Sum_probs=198.8
Q ss_pred hHhhHHHHHHhhhccccChHHHHHHHHHHhhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhh
Q 000913 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1226)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1226)
.++...+..|+-++.+++++. .. +.-..+.+...++++||+|+++.
T Consensus 303 lgq~~~Sa~Rl~~i~~q~~e~-----~~--~~~~~~~~~~~l~~~~vsF~y~~--------------------------- 348 (573)
T COG4987 303 LGQVIASARRLNDILDQKPEV-----TF--PDEQTATTGQALELRNVSFTYPG--------------------------- 348 (573)
T ss_pred hhHHHHHHHHHhhhccCCccc-----CC--CccccCCccceeeeccceeecCC---------------------------
Confidence 456777788888888888772 11 11112222226999999999864
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCC
Q 000913 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1226)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1226)
++.++|+|+|+++++||.+||+|+||||||||++.|+|-++|+ +|+|++||.++..... ++.+++++|
T Consensus 349 -----~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Q- 419 (573)
T COG4987 349 -----QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQ- 419 (573)
T ss_pred -----CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhcc-
Confidence 2234999999999999999999999999999999999999999 9999999999877765 468999999
Q ss_pred CCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 000913 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1226)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1226)
..|++..|+|+||.++. ++...|.+.++.++.. .++. ..+.++..||
T Consensus 420 r~hlF~~Tlr~NL~lA~----~~AsDEel~~aL~qvg---------------------------L~~l--~~~~p~gl~t 466 (573)
T COG4987 420 RVHLFSGTLRDNLRLAN----PDASDEELWAALQQVG---------------------------LEKL--LESAPDGLNT 466 (573)
T ss_pred chHHHHHHHHHHHhhcC----CCCCHHHHHHHHHHcC---------------------------HHHH--HHhChhhhhc
Confidence 56788889999999865 2223333333222110 0111 2234567789
Q ss_pred cccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCc
Q 000913 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1226)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1226)
.+|+.+. .||||||||++|||+|+++.++++|||||.|||+.|+.++++.|.+- ..++|+++ ++|+... .+.||+
T Consensus 467 ~lge~G~-~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~--~~~kTll~-vTHrL~~-le~~dr 541 (573)
T COG4987 467 WLGEGGR-RLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEH--AEGKTLLM-VTHRLRG-LERMDR 541 (573)
T ss_pred hhccCCC-cCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHH--hcCCeEEE-Eeccccc-HhhcCE
Confidence 9998655 69999999999999999999999999999999999999999999764 35666666 5555444 567999
Q ss_pred EEEEcCCeEEEecChhHHHH
Q 000913 395 IILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1226)
|++|++|+++++|.+.++++
T Consensus 542 Iivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 542 IIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred EEEEECCeeeecCCHHhhhc
Confidence 99999999999999999864
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=330.65 Aligned_cols=202 Identities=25% Similarity=0.415 Sum_probs=167.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc----cceEEEecCCCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1226)
++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (222)
T cd03224 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPEL 90 (222)
T ss_pred eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCC
Confidence 4999999999999999999999999999999999999998 9999999988765432 35699999999899999
Q ss_pred CHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHc-CCcccccccccccc
Q 000913 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLDVCADTMVGDEM 320 (1226)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~~ 320 (1226)
||+||+.++....+ .. + ....++.+++.+ ++++..++.
T Consensus 91 t~~~~l~~~~~~~~--~~-----~-----------------------------~~~~~~~~l~~~~~l~~~~~~~----- 129 (222)
T cd03224 91 TVEENLLLGAYARR--RA-----K-----------------------------RKARLERVYELFPRLKERRKQL----- 129 (222)
T ss_pred cHHHHHHHHhhhcC--ch-----h-----------------------------HHHHHHHHHHHHHhhhhhhhCc-----
Confidence 99999998653321 00 0 011233455566 465555544
Q ss_pred cCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcC
Q 000913 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1226)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1226)
++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. . +++|+.++|+..++.+++|+|++|++
T Consensus 130 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~ 207 (222)
T cd03224 130 AGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-E-GVTILLVEQNARFALEIADRAYVLER 207 (222)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhccEEEEeeC
Confidence 346999999999999999999999999999999999999999999998764 3 44555577888899999999999999
Q ss_pred CeEEEecChhHHH
Q 000913 401 GQIVYQGPRELVL 413 (1226)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1226)
|++++.|+.+++.
T Consensus 208 G~i~~~~~~~~~~ 220 (222)
T cd03224 208 GRVVLEGTAAELL 220 (222)
T ss_pred CeEEEeCCHHHHh
Confidence 9999999987653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=330.62 Aligned_cols=203 Identities=31% Similarity=0.443 Sum_probs=170.4
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC--ccceEEEecCCCCCCCCCC
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMT 242 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1226)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 35999999999999999999999999999999999999998 999999999875321 2356999999988888999
Q ss_pred HHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 000913 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1226)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1226)
|+||+.+..+..+.... +....++.+++.+||++..++.+ .
T Consensus 92 v~~~l~~~~~~~~~~~~----------------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~ 132 (220)
T cd03263 92 VREHLRFYARLKGLPKS----------------------------------EIKEEVELLLRVLGLTDKANKRA-----R 132 (220)
T ss_pred HHHHHHHHHHHcCCCHH----------------------------------HHHHHHHHHHHHcCCHHHHhChh-----h
Confidence 99999986544321100 01123466788999987777655 4
Q ss_pred CCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCe
Q 000913 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1226)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1226)
.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.. + .+|+.++|+..++.+++|++++|++|+
T Consensus 133 ~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 133 TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--G-RSIILTTHSMDEAEALCDRIAIMSDGK 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--C-CEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999998753 3 556667788888889999999999999
Q ss_pred EEEecChhHH
Q 000913 403 IVYQGPRELV 412 (1226)
Q Consensus 403 iv~~G~~~~~ 412 (1226)
+++.|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03263 210 LRCIGSPQEL 219 (220)
T ss_pred EEecCCHHHc
Confidence 9999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=330.80 Aligned_cols=211 Identities=25% Similarity=0.321 Sum_probs=173.2
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++.. .+.+.+|+|+|+++++|++++|+|||||||||||++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhh
Confidence 5678888776421 012469999999999999999999999999999999999876 46899999998753
Q ss_pred hh---h---hc-ceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 000913 936 QE---T---FA-RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 1008 (1226)
Q Consensus 936 ~~---~---~~-~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~L 1008 (1226)
.. . ++ +.++|++|++.+++.+||+||+.+....+. ....+..+.+.++++.+++.+..+..+ ..|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 21 1 22 569999999988889999999988654331 223334456789999999987776653 579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 000913 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1226)
Q Consensus 1009 SgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~ 1087 (1226)
|||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++++ .|+|||+++|+++ .+ +.+|++++|++ |++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~-G~i 219 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKD-GQL 219 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeC-CEe
Confidence 99999999999999999999999999999999999999999999975 4899999999986 34 55799999986 554
Q ss_pred E
Q 000913 1088 I 1088 (1226)
Q Consensus 1088 ~ 1088 (1226)
+
T Consensus 220 ~ 220 (221)
T TIGR02211 220 F 220 (221)
T ss_pred c
Confidence 3
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=317.40 Aligned_cols=212 Identities=26% Similarity=0.402 Sum_probs=177.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|++..| ++.++|++||+++++||+++|+|+|||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 4 L~v~~l~~~Y-------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit 68 (237)
T COG0410 4 LEVENLSAGY-------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDIT 68 (237)
T ss_pred eeEEeEeecc-------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecC
Confidence 5667776555 45789999999999999999999999999999999999876 45899999999875
Q ss_pred h----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcC-CCcccccccCCCCCCCCCH
Q 000913 936 Q----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-LNPLRQSLVGLPGVSGLST 1010 (1226)
Q Consensus 936 ~----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~-l~~~~~~~~g~~~~~~LSg 1010 (1226)
. ...++.++||||....|+.+||+|||..++..+.. ++..+..++++.+.+= |.+.++...| .|||
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSG 139 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSG 139 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCCh
Confidence 4 23556799999999999999999999988755432 1111222667777663 5556666644 5999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 000913 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1226)
Q Consensus 1011 Gqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y 1089 (1226)
||||.|+|||||+++|++|+|||||.||-|.-...|.++|+++.++ |.||+.+-+... ...+.+||.++|.+ |++++
T Consensus 140 GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~-Griv~ 217 (237)
T COG0410 140 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLEN-GRIVL 217 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 779999988766 47889999999986 79999
Q ss_pred eCCC
Q 000913 1090 VGPL 1093 (1226)
Q Consensus 1090 ~G~~ 1093 (1226)
.|+.
T Consensus 218 ~G~~ 221 (237)
T COG0410 218 SGTA 221 (237)
T ss_pred ecCH
Confidence 9985
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=342.74 Aligned_cols=216 Identities=24% Similarity=0.304 Sum_probs=182.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++.. ..+.+|+|||++|++||++||+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 37889999887421 12359999999999999999999999999999999999876 5689999999876
Q ss_pred Ch---hhhcceeeEeecCCC-CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 000913 935 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1226)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSg 1010 (1226)
.. ...++.+||++|++. .++..||+||+.|..... ..+.++.+++++++++.++|.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 42 235567999999974 567789999999865332 2345555677899999999988777764 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 000913 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1226)
Q Consensus 1011 Gqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y 1089 (1226)
|||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++ |+|||+++|++.. + ..+|++++|++ |+++.
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~-~-~~~dri~~l~~-G~i~~ 220 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE-V-ALSDRVLVMKN-GQVES 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 9999999999863 5 67999999986 79998
Q ss_pred eCCC
Q 000913 1090 VGPL 1093 (1226)
Q Consensus 1090 ~G~~ 1093 (1226)
.|+.
T Consensus 221 ~g~~ 224 (279)
T PRK13650 221 TSTP 224 (279)
T ss_pred ECCH
Confidence 8875
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=366.83 Aligned_cols=222 Identities=27% Similarity=0.425 Sum_probs=185.0
Q ss_pred CCccCC-CCceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEE
Q 000913 846 GMVLPF-EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT 924 (1226)
Q Consensus 846 ~~~~~~-~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~ 924 (1226)
|...|. -...++|+||+|.|+..+ +..+|+|+||+++|||.||||||||+||||+.++|..... +.+
T Consensus 455 G~~~p~~~~G~IeF~~VsFaYP~Rp----------~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--Pts 522 (716)
T KOG0058|consen 455 GTLAPDHLQGVIEFEDVSFAYPTRP----------DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTS 522 (716)
T ss_pred CccccccccceEEEEEeeeecCCCC----------CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCC
Confidence 433442 345799999999998754 4679999999999999999999999999999999998876 678
Q ss_pred EEEEEcCccCCh---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHH-----HHHHHHHcCCCccc
Q 000913 925 GNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMF-----IDEVMELVELNPLR 996 (1226)
Q Consensus 925 G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~-----v~~~l~~l~l~~~~ 996 (1226)
|+|.+||+|+++ ..+++.+|+|.|+|.++. -||+|||.|+.. ..+.++.... +.+.+. ++.+-.
T Consensus 523 G~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~--~~p~gY 594 (716)
T KOG0058|consen 523 GRILLDGVPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEEIEAAAKMANAHEFIT--NFPDGY 594 (716)
T ss_pred CeEEECCeehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCcccc
Confidence 999999999754 457889999999999986 599999999753 3343332211 222222 345567
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcC
Q 000913 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1076 (1226)
Q Consensus 997 ~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D 1076 (1226)
|+.+|..| ..||||||||++|||||++||.||||||+||.||+++...|.++|.++.+ ++|||++.|+.| ..+.+|
T Consensus 595 ~T~VGEkG-~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad 670 (716)
T KOG0058|consen 595 NTVVGEKG-SQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHAD 670 (716)
T ss_pred ccccCCcc-ccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--Hhhhcc
Confidence 88899876 47999999999999999999999999999999999999999999998864 699999999986 578899
Q ss_pred eEEEEecCcEEEEeCC
Q 000913 1077 ELFLMKRGGQEIYVGP 1092 (1226)
Q Consensus 1077 ~v~ll~~Gg~~~y~G~ 1092 (1226)
+|+++++ |+++..|.
T Consensus 671 ~Ivvi~~-G~V~E~G~ 685 (716)
T KOG0058|consen 671 QIVVIDK-GRVVEMGT 685 (716)
T ss_pred EEEEEcC-CeEEeccc
Confidence 9999986 79999995
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=337.50 Aligned_cols=206 Identities=21% Similarity=0.277 Sum_probs=177.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEH
Confidence 488999998874 2359999999999999999999999999999999999876 4689999998765
Q ss_pred ChhhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 000913 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1226)
Q Consensus 935 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrq 1014 (1226)
. ..++.++|++|++.+++.+||+||+.+... . ..++.+.++++.++|.+..+.. +..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~----~-----~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK----G-----QWRDAALQALAAVGLADRANEW-----PAALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc----c-----hHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHH
Confidence 3 345679999999988888999999987421 0 1234578899999998777665 3579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 000913 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1015 rl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
|++||++|+.+|++|||||||+|||+.++..+++.|+++.+ .|+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 99999999999999999999999999999999999999864 5899999999987 47788999999986 688888764
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=339.60 Aligned_cols=215 Identities=23% Similarity=0.340 Sum_probs=173.9
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCC-CCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD-NHIGEM 241 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~l 241 (1226)
.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++ ..++.+
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (279)
T PRK13650 21 YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGA 97 (279)
T ss_pred eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccc
Confidence 4999999999999999999999999999999999999998 9999999998764322 35799999986 367789
Q ss_pred CHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 000913 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1226)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1226)
||+|||.|+....+... .+....++.+++.+||++..+..+
T Consensus 98 tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~----- 138 (279)
T PRK13650 98 TVEDDVAFGLENKGIPH----------------------------------EEMKERVNEALELVGMQDFKEREP----- 138 (279)
T ss_pred cHHHHHHhhHHhCCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhCCc-----
Confidence 99999998754322110 011224567889999987666554
Q ss_pred CCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCC
Q 000913 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1226)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1226)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++..+.| |+.++|+..++ ..+|+|++|++|
T Consensus 139 ~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~t-ilivtH~~~~~-~~~dri~~l~~G 216 (279)
T PRK13650 139 ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMT-VISITHDLDEV-ALSDRVLVMKNG 216 (279)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEecCHHHH-HhCCEEEEEECC
Confidence 4699999999999999999999999999999999999999999999986533444 44466777777 589999999999
Q ss_pred eEEEecChhHHHH---HHHhcCCCCC
Q 000913 402 QIVYQGPRELVLE---FFASMGFRCP 424 (1226)
Q Consensus 402 ~iv~~G~~~~~~~---~F~~~Gf~cp 424 (1226)
+++..|+++++.. .++..|+.+|
T Consensus 217 ~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13650 217 QVESTSTPRELFSRGNDLLQLGLDIP 242 (279)
T ss_pred EEEEECCHHHHHcChHHHHHcCCCCc
Confidence 9999999987653 2334455433
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=329.81 Aligned_cols=208 Identities=25% Similarity=0.340 Sum_probs=177.5
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh
Q 000913 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1226)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1226)
+++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~l~~v~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~ 66 (223)
T TIGR03740 2 ETKNLSKRFG-------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTR 66 (223)
T ss_pred EEEeEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccc
Confidence 4677776653 2469999999999999999999999999999999999876 568999999987643
Q ss_pred hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 000913 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRL 1016 (1226)
Q Consensus 937 ~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl 1016 (1226)
.. .+.++|++|++.+++.+|++||+.+....+. .. +..+.++++.+++.+..+..+ ..||||||||+
T Consensus 67 ~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv 133 (223)
T TIGR03740 67 KD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRL 133 (223)
T ss_pred cc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHH
Confidence 22 2569999999988888999999987654332 11 234788999999988777653 56999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 000913 1017 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1094 (1226)
Q Consensus 1017 ~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~~ 1094 (1226)
+||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.|+..
T Consensus 134 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 209 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKIN 209 (223)
T ss_pred HHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChh
Confidence 9999999999999999999999999999999999999877999999999987 47789999999986 7899999864
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=335.16 Aligned_cols=212 Identities=22% Similarity=0.335 Sum_probs=178.1
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++ .+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEec
Confidence 478899988763 2469999999999999999999999999999999999876 4689999999875
Q ss_pred Chh----hhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHc-CCCcccccccCCCCCCCCC
Q 000913 935 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNPLRQSLVGLPGVSGLS 1009 (1226)
Q Consensus 935 ~~~----~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l-~l~~~~~~~~g~~~~~~LS 1009 (1226)
... ..++.++|++|++.+++.+||.||+.+..... ...+..+.++++++.+ ++.+..+.. +..||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCC
Confidence 431 24567999999998888899999998854221 1222334567778887 466555544 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 000913 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1226)
Q Consensus 1010 gGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y 1089 (1226)
||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++ |++++
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVL 217 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEe
Confidence 99999999999999999999999999999999999999999999877999999999986 58899999999986 79999
Q ss_pred eCCC
Q 000913 1090 VGPL 1093 (1226)
Q Consensus 1090 ~G~~ 1093 (1226)
.|+.
T Consensus 218 ~~~~ 221 (237)
T PRK11614 218 EDTG 221 (237)
T ss_pred eCCH
Confidence 9975
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=337.13 Aligned_cols=206 Identities=21% Similarity=0.355 Sum_probs=171.4
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc------cceEEEecCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNHIG 239 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d~~~~ 239 (1226)
.+|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|+..+++
T Consensus 21 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 97 (269)
T PRK11831 21 CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFT 97 (269)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccCC
Confidence 4999999999999999999999999999999999999998 9999999988754321 356999999988899
Q ss_pred CCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 000913 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1226)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1226)
.+||+||+.++...... .. . .+....+..+++.+||++..+..+
T Consensus 98 ~~tv~enl~~~~~~~~~-~~--------~------------------------~~~~~~~~~~l~~~gl~~~~~~~~--- 141 (269)
T PRK11831 98 DMNVFDNVAYPLREHTQ-LP--------A------------------------PLLHSTVMMKLEAVGLRGAAKLMP--- 141 (269)
T ss_pred CCCHHHHHHHHHHHccC-CC--------H------------------------HHHHHHHHHHHHHcCChhhhhCCh---
Confidence 99999999886432100 00 0 001123456788999988777654
Q ss_pred ccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEc
Q 000913 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1226)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1226)
..|||||||||+||++|+.+|+++||||||+|||+.+...+.+.|+++... .+++||.++|+..++.+++|+|++|+
T Consensus 142 --~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiiivsH~~~~~~~~~d~v~~l~ 218 (269)
T PRK11831 142 --SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSA-LGVTCVVVSHDVPEVLSIADHAYIVA 218 (269)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhhCEEEEEE
Confidence 469999999999999999999999999999999999999999999987653 24455557888899999999999999
Q ss_pred CCeEEEecChhHHH
Q 000913 400 DGQIVYQGPRELVL 413 (1226)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1226)
+|++++.|+++++.
T Consensus 219 ~G~i~~~g~~~~~~ 232 (269)
T PRK11831 219 DKKIVAHGSAQALQ 232 (269)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999988764
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=334.01 Aligned_cols=214 Identities=29% Similarity=0.401 Sum_probs=171.7
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC------ccceEEEecCCCCCC
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHI 238 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1226)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCccc
Confidence 35999999999999999999999999999999999999988 999999999876543 135799999998889
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 000913 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1226)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1226)
+.+||+||+.++..... . . .... .+.. .......++.+++.+||.+..++.
T Consensus 91 ~~~tv~~~l~~~~~~~~-~-~---~~~~------~~~~---------------~~~~~~~~~~~l~~~~l~~~~~~~--- 141 (241)
T cd03256 91 ERLSVLENVLSGRLGRR-S-T---WRSL------FGLF---------------PKEEKQRALAALERVGLLDKAYQR--- 141 (241)
T ss_pred ccCcHHHHHHhhhcccc-h-h---hhhh------cccC---------------cHHHHHHHHHHHHHcCChhhhCCC---
Confidence 99999999987642110 0 0 0000 0000 000122456678899998666554
Q ss_pred cccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEE
Q 000913 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1226)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1226)
+..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|++++...+ ++||.++|+..++.+++|++++|
T Consensus 142 --~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~tH~~~~~~~~~d~v~~l 218 (241)
T cd03256 142 --ADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEG-ITVIVSLHQVDLAREYADRIVGL 218 (241)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 456999999999999999999999999999999999999999999998765334 45555788888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000913 399 SDGQIVYQGPRELVL 413 (1226)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1226)
++|++++.|+++++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (241)
T cd03256 219 KDGRIVFDGPPAELT 233 (241)
T ss_pred ECCEEEeecCHHHhh
Confidence 999999999988753
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=337.75 Aligned_cols=203 Identities=26% Similarity=0.327 Sum_probs=169.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCC-CCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDN-HIGEM 241 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~-~~~~l 241 (1226)
.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++. .++.+
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 95 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS 95 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccC
Confidence 4999999999999999999999999999999999999998 9999999998765332 357999999853 55678
Q ss_pred CHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 000913 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1226)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1226)
||+||+.|+....+... .+....++.+++.+||.+..++.+
T Consensus 96 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~----- 136 (274)
T PRK13647 96 TVWDDVAFGPVNMGLDK----------------------------------DEVERRVEEALKAVRMWDFRDKPP----- 136 (274)
T ss_pred cHHHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCHHHhcCCh-----
Confidence 99999998754321100 011123567889999987766554
Q ss_pred CCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCC
Q 000913 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1226)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1226)
..|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|++++. .+ .+|+.++|+..++.+++|+|++|++|
T Consensus 137 ~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g-~tili~tH~~~~~~~~~d~i~~l~~G 214 (274)
T PRK13647 137 YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-QG-KTVIVATHDVDLAAEWADQVIVLKEG 214 (274)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998764 34 45566788888999999999999999
Q ss_pred eEEEecChhHH
Q 000913 402 QIVYQGPRELV 412 (1226)
Q Consensus 402 ~iv~~G~~~~~ 412 (1226)
++++.|+++++
T Consensus 215 ~i~~~g~~~~~ 225 (274)
T PRK13647 215 RVLAEGDKSLL 225 (274)
T ss_pred EEEEECCHHHh
Confidence 99999998654
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=327.32 Aligned_cols=197 Identities=27% Similarity=0.404 Sum_probs=166.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCCCHHH
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1226)
.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. ..++.++|++|++.+++.+||+|
T Consensus 14 ~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e 89 (210)
T cd03269 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVID 89 (210)
T ss_pred EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHH
Confidence 4999999999999999999999999999999999999988 9999999987653 23567999999998899999999
Q ss_pred HHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 000913 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1226)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1226)
|+.+.....+... .+....++++++.+||++..++.+ ..||
T Consensus 90 ~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 130 (210)
T cd03269 90 QLVYLAQLKGLKK----------------------------------EEARRRIDEWLERLELSEYANKRV-----EELS 130 (210)
T ss_pred HHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCChHHHhCcH-----hhCC
Confidence 9988654332100 001123567788999987766554 4699
Q ss_pred hhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEEE
Q 000913 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1226)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~ 405 (1226)
|||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.+ .+ .+|+.++|+..++.+++|++++|++|++++
T Consensus 131 ~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~~-~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 131 KGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-AG-KTVILSTHQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CC-CEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence 9999999999999999999999999999999999999999998764 34 455667888889999999999999999987
Q ss_pred ec
Q 000913 406 QG 407 (1226)
Q Consensus 406 ~G 407 (1226)
.|
T Consensus 209 ~~ 210 (210)
T cd03269 209 YG 210 (210)
T ss_pred cC
Confidence 65
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=333.63 Aligned_cols=213 Identities=23% Similarity=0.316 Sum_probs=179.9
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (242)
T PRK11124 3 IQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFD 67 (242)
T ss_pred EEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecc
Confidence 67888887763 2469999999999999999999999999999999999876 56899999998642
Q ss_pred ---------hhhhcceeeEeecCCCCCCCCCHHHHHHHHH-HhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 000913 936 ---------QETFARISGYCEQNDIHSPFVTIYESLLFSA-WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 1005 (1226)
Q Consensus 936 ---------~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~-~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~ 1005 (1226)
....++.++|++|++.+++.+||.||+.+.. ... .....+..+.+.++++.+|+.+..+..+
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 139 (242)
T PRK11124 68 FSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP----- 139 (242)
T ss_pred cccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----
Confidence 1234567999999999999999999997532 221 1223344566889999999987777663
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 000913 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1226)
Q Consensus 1006 ~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg 1085 (1226)
..||||||||++||++|+.+|+||+|||||+|||+.++..+++.|+++.++|+|||+++|++. ++.+.+|++++|.+ |
T Consensus 140 ~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~-g 217 (242)
T PRK11124 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN-G 217 (242)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999877999999999987 47788999999986 7
Q ss_pred EEEEeCCC
Q 000913 1086 QEIYVGPL 1093 (1226)
Q Consensus 1086 ~~~y~G~~ 1093 (1226)
++++.|+.
T Consensus 218 ~i~~~~~~ 225 (242)
T PRK11124 218 HIVEQGDA 225 (242)
T ss_pred EEEEeCCH
Confidence 89998874
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=335.91 Aligned_cols=214 Identities=22% Similarity=0.303 Sum_probs=180.7
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++ .+.+|+||||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 65 (252)
T TIGR03005 1 VRFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLY 65 (252)
T ss_pred CEEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 35788887763 2469999999999999999999999999999999999876 46899999997653
Q ss_pred h----------------hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 000913 936 Q----------------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999 (1226)
Q Consensus 936 ~----------------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~ 999 (1226)
. ..+++.++|++|++.+++..|+.||+.+..... ......+..+.++++++.+++.+..+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 143 (252)
T TIGR03005 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM 143 (252)
T ss_pred ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC
Confidence 1 134567999999999898999999998753221 1123444556788999999998777665
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeE
Q 000913 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 1078 (1226)
Q Consensus 1000 ~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v 1078 (1226)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|++. ++...+|++
T Consensus 144 -----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i 217 (252)
T TIGR03005 144 -----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRV 217 (252)
T ss_pred -----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999998764 899999999987 477889999
Q ss_pred EEEecCcEEEEeCCC
Q 000913 1079 FLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1079 ~ll~~Gg~~~y~G~~ 1093 (1226)
++|++ |++++.|+.
T Consensus 218 ~~l~~-G~i~~~g~~ 231 (252)
T TIGR03005 218 CFFDK-GRIVEQGKP 231 (252)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99986 789988874
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=331.87 Aligned_cols=212 Identities=26% Similarity=0.381 Sum_probs=177.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++ ++.+|+|+|++|++|++++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcc
Confidence 46778877763 2469999999999999999999999999999999999876 46899999998753
Q ss_pred h--hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 000913 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1226)
Q Consensus 936 ~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqr 1013 (1226)
. ....+.++|++|++.+++.+|++||+.+.+..+ ....++..+.+.++++.++|.+..++.+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 2 122356999999998888899999998765433 1233344566889999999987776653 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCC
Q 000913 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1226)
Q Consensus 1014 qrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~ 1092 (1226)
||++||++|+.+|+||+|||||+|||+.++..+++.|+++++ +|+|||+++|+++. + +.+|++++|++ |++++.|+
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~i~~l~~-G~i~~~~~ 215 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-I-EADDRLVVLHR-GRVLADGA 215 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-H-hhCCEEEEEeC-CeEEEeCC
Confidence 999999999999999999999999999999999999999874 58999999999873 4 45999999986 68888886
Q ss_pred C
Q 000913 1093 L 1093 (1226)
Q Consensus 1093 ~ 1093 (1226)
.
T Consensus 216 ~ 216 (236)
T TIGR03864 216 A 216 (236)
T ss_pred H
Confidence 4
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=333.19 Aligned_cols=205 Identities=27% Similarity=0.411 Sum_probs=170.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1226)
.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|
T Consensus 15 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (242)
T cd03295 15 KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMT 91 (242)
T ss_pred eEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCCc
Confidence 4999999999999999999999999999999999999998 9999999988754332 357999999998999999
Q ss_pred HHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc--cccccccccc
Q 000913 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV--CADTMVGDEM 320 (1226)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~dt~vg~~~ 320 (1226)
|+||+.++.+..+... .+....+..+++.+||+. ..++ .
T Consensus 92 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~l~l~~~~~~~~-----~ 132 (242)
T cd03295 92 VEENIALVPKLLKWPK----------------------------------EKIRERADELLALVGLDPAEFADR-----Y 132 (242)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCCcHHHHhc-----C
Confidence 9999998654322100 001123566788999975 4443 3
Q ss_pred cCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcC
Q 000913 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1226)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1226)
++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+ ++||.++|+..++.+++|+|++|++
T Consensus 133 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g-~tvii~sH~~~~~~~~~d~i~~l~~ 211 (242)
T cd03295 133 PHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELG-KTIVFVTHDIDEAFRLADRIAIMKN 211 (242)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEecCHHHHHHhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999998765324 4555577788889999999999999
Q ss_pred CeEEEecChhHHH
Q 000913 401 GQIVYQGPRELVL 413 (1226)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1226)
|++++.|+.+++.
T Consensus 212 G~i~~~~~~~~~~ 224 (242)
T cd03295 212 GEIVQVGTPDEIL 224 (242)
T ss_pred CEEEEecCHHHHH
Confidence 9999999987763
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=387.84 Aligned_cols=258 Identities=25% Similarity=0.392 Sum_probs=198.8
Q ss_pred hHhhHHHHHHhhhccccChHHHHHHHHHHhhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhh
Q 000913 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1226)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1226)
.++.+..++|+.++++.+++. .........+.....++|+||++.++.
T Consensus 428 ~~~~~~~~~ri~~il~~~~e~-----~~~~~~~~~~~~~~~I~~~~vsf~Y~~--------------------------- 475 (694)
T TIGR03375 428 YQQAKTALQSLDELMQLPVER-----PEGTRFLHRPRLQGEIEFRNVSFAYPG--------------------------- 475 (694)
T ss_pred HHHHHHHHHHHHHHHcCCCCC-----CCCCCCCCCCCccceEEEEEEEEEeCC---------------------------
Confidence 678889999999988876541 000000111112347999999999842
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCC
Q 000913 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1226)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1226)
...++|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|+
T Consensus 476 -----~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~ 547 (694)
T TIGR03375 476 -----QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQD 547 (694)
T ss_pred -----CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCC
Confidence 1134999999999999999999999999999999999999998 9999999999887654 4789999997
Q ss_pred CCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 000913 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1226)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1226)
+.+| +.||+|||.++.. ....+.+.++++.. + .+.. +..|++..||
T Consensus 548 ~~lf-~~TI~eNi~~~~~----~~~~~~i~~a~~~~---~------------------------l~~~--i~~lp~gl~T 593 (694)
T TIGR03375 548 PRLF-YGTLRDNIALGAP----YADDEEILRAAELA---G------------------------VTEF--VRRHPDGLDM 593 (694)
T ss_pred hhhh-hhhHHHHHhCCCC----CCCHHHHHHHHHHc---C------------------------hHHH--HHhCcccccc
Confidence 7655 5799999987631 11122222222111 0 0111 2247788899
Q ss_pred cccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCc
Q 000913 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1226)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1226)
.+|+.+. .||||||||++|||||+++|++++||||||+||+.++..|.+.|+++. .++|+|++ +|.. ++.+.||+
T Consensus 594 ~i~e~G~-~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~iiI-tHrl-~~~~~~D~ 668 (694)
T TIGR03375 594 QIGERGR-SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL--AGKTLVLV-THRT-SLLDLVDR 668 (694)
T ss_pred eecCCCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEE-ecCH-HHHHhCCE
Confidence 9998765 699999999999999999999999999999999999999999998764 35566664 4443 56789999
Q ss_pred EEEEcCCeEEEecChhHHHH
Q 000913 395 IILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1226)
|++|++|+++++|+++++++
T Consensus 669 iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 669 IIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred EEEEeCCEEEeeCCHHHHHH
Confidence 99999999999999999865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=346.21 Aligned_cols=229 Identities=21% Similarity=0.233 Sum_probs=185.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|++..++............+...+|+|||++|++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEEC
Confidence 48899998887532110000000123579999999999999999999999999999999999876 4589999999876
Q ss_pred Chh------hhcceeeEeecCC--CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCC
Q 000913 935 KQE------TFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 1005 (1226)
Q Consensus 935 ~~~------~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~ 1005 (1226)
... .+++.++||+|++ .+++.+||.|++.+...... ...+.++.++.+.++++.++|. ...++. +
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRY-----P 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCC-----c
Confidence 421 2456799999997 57889999999988644321 1234556677888999999995 355555 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecC
Q 000913 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1226)
Q Consensus 1006 ~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~G 1084 (1226)
..|||||||||+||+||+.+|++|+|||||+|||+.++..|+++|+++.++ |.|||++|||++ .+.+.+|++++|.+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~- 237 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL- 237 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999764 999999999987 47788999999986
Q ss_pred cEEEEeCCC
Q 000913 1085 GQEIYVGPL 1093 (1226)
Q Consensus 1085 g~~~y~G~~ 1093 (1226)
|+++..|+.
T Consensus 238 G~ive~g~~ 246 (331)
T PRK15079 238 GHAVELGTY 246 (331)
T ss_pred CEEEEEcCH
Confidence 799999985
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=342.19 Aligned_cols=218 Identities=24% Similarity=0.295 Sum_probs=180.4
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++... ...+.+|+|||+++++||++||+|||||||||||++|+|... +.+|+|.++|.+..
T Consensus 3 i~~~~l~~~~~~~~--------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 72 (287)
T PRK13641 3 IKFENVDYIYSPGT--------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHIT 72 (287)
T ss_pred EEEEEEEEEcCCCC--------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 67888888774210 001459999999999999999999999999999999999876 56899999998753
Q ss_pred h-------hhhcceeeEeecCCC-CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 000913 936 Q-------ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 1006 (1226)
Q Consensus 936 ~-------~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~ 1006 (1226)
. ...++.+||++|++. .+..+||.||+.|..... ....++..++++++++.++|. +..+.. +.
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 144 (287)
T PRK13641 73 PETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKS-----PF 144 (287)
T ss_pred cccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCC-----cc
Confidence 2 234567999999963 233579999998865432 233455566789999999997 566665 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 000913 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1226)
Q Consensus 1007 ~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~ 1086 (1226)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||++||+++ ++.+.||++++|++ |+
T Consensus 145 ~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G~ 222 (287)
T PRK13641 145 ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-GK 222 (287)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999999777999999999987 47889999999986 78
Q ss_pred EEEeCCC
Q 000913 1087 EIYVGPL 1093 (1226)
Q Consensus 1087 ~~y~G~~ 1093 (1226)
+++.|+.
T Consensus 223 i~~~g~~ 229 (287)
T PRK13641 223 LIKHASP 229 (287)
T ss_pred EEEeCCH
Confidence 9999874
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=377.78 Aligned_cols=256 Identities=24% Similarity=0.373 Sum_probs=194.2
Q ss_pred hHhhHHHHHHhhhccccChHHHHHHHHHHhhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhh
Q 000913 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1226)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1226)
.+++.+.++|+.++++.+++ ..+... ........+++|+||++.++.
T Consensus 304 ~~~~~~s~~ri~~ll~~~~~-----~~~~~~-~~~~~~~~~i~~~~v~f~y~~--------------------------- 350 (574)
T PRK11160 304 LGQVIASARRINEITEQKPE-----VTFPTT-STAAADQVSLTLNNVSFTYPD--------------------------- 350 (574)
T ss_pred HHHHHHHHHHHHHHHhCCCC-----CCCCcc-cCCCCCCCeEEEEEEEEECCC---------------------------
Confidence 45677788888888776554 111000 011122457999999999742
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCC
Q 000913 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1226)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1226)
.+.++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|++||.++.+... ++.++||+|+
T Consensus 351 -----~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~ 422 (574)
T PRK11160 351 -----QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQR 422 (574)
T ss_pred -----CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEccc
Confidence 1124899999999999999999999999999999999999998 9999999999887654 4679999998
Q ss_pred CCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 000913 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1226)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1226)
+.+| +.|++||+.++.. ....+.+.++.+.. ++ +.. .-. ++..||
T Consensus 423 ~~lf-~~ti~~Ni~~~~~----~~~~~~i~~al~~~---~l------------------------~~~--i~~-p~GldT 467 (574)
T PRK11160 423 VHLF-SATLRDNLLLAAP----NASDEALIEVLQQV---GL------------------------EKL--LED-DKGLNA 467 (574)
T ss_pred chhh-cccHHHHhhcCCC----ccCHHHHHHHHHHc---CC------------------------HHH--HcC-ccccCc
Confidence 7655 5799999988642 11122222221111 00 111 123 677899
Q ss_pred cccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCc
Q 000913 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1226)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1226)
.||+.+. .||||||||++|||+++++|++|+|||||++||+.++..|.+.|++.. .++|+|++.|++ +....+|+
T Consensus 468 ~vge~g~-~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~--~~~~~~d~ 542 (574)
T PRK11160 468 WLGEGGR-QLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRL--TGLEQFDR 542 (574)
T ss_pred hhcCCCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCh--hHHHhCCE
Confidence 9998654 699999999999999999999999999999999999999999998864 356666654443 44567999
Q ss_pred EEEEcCCeEEEecChhHHHH
Q 000913 395 IILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1226)
|++|++|++++.|+++++.+
T Consensus 543 i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 543 ICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred EEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999998864
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=330.03 Aligned_cols=195 Identities=29% Similarity=0.404 Sum_probs=161.5
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-------cceEEEecCCCCC
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1226)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 45999999999999999999999999999999999999998 9999999998765431 3579999999989
Q ss_pred CCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 000913 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1226)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1226)
++.+||+||+.++....+... .+....++.+++.+||++..++.+
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 138 (218)
T cd03255 94 LPDLTALENVELPLLLAGVPK----------------------------------KERRERAEELLERVGLGDRLNHYP- 138 (218)
T ss_pred CCCCcHHHHHHHHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhcCh-
Confidence 999999999998764332100 001123567888999987666544
Q ss_pred ccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEE
Q 000913 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1226)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iil 397 (1226)
+.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..+ ++||.++|+..++. .+|++++
T Consensus 139 ----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~-~~d~v~~ 212 (218)
T cd03255 139 ----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAG-TTIVVVTHDPELAE-YADRIIE 212 (218)
T ss_pred ----hhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CeEEEEECCHHHHh-hhcEEEE
Confidence 46999999999999999999999999999999999999999999998865234 44555677777775 9999999
Q ss_pred EcCCeE
Q 000913 398 LSDGQI 403 (1226)
Q Consensus 398 L~~G~i 403 (1226)
|++|++
T Consensus 213 l~~G~i 218 (218)
T cd03255 213 LRDGKI 218 (218)
T ss_pred eeCCcC
Confidence 999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=340.41 Aligned_cols=213 Identities=23% Similarity=0.320 Sum_probs=179.7
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++ +++.+|+||||+|++||++||+|||||||||||++|+|..+ +..|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECC
Confidence 56788887763 12359999999999999999999999999999999999876 56899999998764
Q ss_pred h----hhhcceeeEeecCCC-CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 000913 936 Q----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1226)
Q Consensus 936 ~----~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSg 1010 (1226)
. ...++.+||++|++. .+...|+.||+.|..... ..+..+.++.++++++.++|.+..+..+ ..|||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCH
Confidence 2 234567999999975 356689999998865332 2344455567889999999988777663 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 000913 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1226)
Q Consensus 1011 Gqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~ 1090 (1226)
|||||++||+||+.+|+||+|||||+|||+.++..+++.|+++.++|+|||+++|++. ++ +.+|++++|++ |++++.
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~ 216 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLE 216 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999987 35 66999999986 689999
Q ss_pred CCC
Q 000913 1091 GPL 1093 (1226)
Q Consensus 1091 G~~ 1093 (1226)
|+.
T Consensus 217 g~~ 219 (274)
T PRK13644 217 GEP 219 (274)
T ss_pred CCH
Confidence 975
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=333.36 Aligned_cols=216 Identities=24% Similarity=0.280 Sum_probs=178.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCc---eEEEEEEEcCc
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISGY 932 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g~ 932 (1226)
++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14247 4 IEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQ 70 (250)
T ss_pred EEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCE
Confidence 67888887763 246999999999999999999999999999999999986521 36899999998
Q ss_pred cCCh---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcc----cccccCCCCC
Q 000913 933 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL----RQSLVGLPGV 1005 (1226)
Q Consensus 933 ~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~----~~~~~g~~~~ 1005 (1226)
++.. ..+++.+||++|++.+++.+||+||+.+....+... ....+..+.++++++.++|.+. .+.. +
T Consensus 71 ~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~ 144 (250)
T PRK14247 71 DIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLV-KSKKELQERVRWALEKAQLWDEVKDRLDAP-----A 144 (250)
T ss_pred ECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhcccc-CCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----c
Confidence 7532 245567999999998888999999999865332111 1233445668899999998642 3333 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 000913 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1226)
Q Consensus 1006 ~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg 1085 (1226)
..||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++.+.+|++++|++ |
T Consensus 145 ~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G 221 (250)
T PRK14247 145 GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK-G 221 (250)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-C
Confidence 67999999999999999999999999999999999999999999999864 899999999987 47788999999986 7
Q ss_pred EEEEeCCC
Q 000913 1086 QEIYVGPL 1093 (1226)
Q Consensus 1086 ~~~y~G~~ 1093 (1226)
+++..|+.
T Consensus 222 ~i~~~g~~ 229 (250)
T PRK14247 222 QIVEWGPT 229 (250)
T ss_pred eEEEECCH
Confidence 88888874
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=346.10 Aligned_cols=256 Identities=27% Similarity=0.386 Sum_probs=203.5
Q ss_pred hhHHHHHHhhhccccChHHHHHHHHHHhhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhhcC
Q 000913 80 ERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIP 159 (1226)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 159 (1226)
.++.+-.|+-+.+.+.++ ..+++.+|-|+..+..|++++-- +
T Consensus 304 ~Ar~s~~Rl~~lL~~~p~--------~~~~m~LP~P~g~L~Ve~l~~~P-P----------------------------- 345 (580)
T COG4618 304 AARQSYKRLNELLAELPA--------AAERMPLPAPQGALSVERLTAAP-P----------------------------- 345 (580)
T ss_pred HHHHHHHHHHHHHHhCcc--------ccCCCCCCCCCceeeEeeeeecC-C-----------------------------
Confidence 344455555555544443 33468888999999999999821 1
Q ss_pred CCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCcc---ceEEEecCCCC
Q 000913 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYISQHDN 236 (1226)
Q Consensus 160 ~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~~---~~~~yv~Q~d~ 236 (1226)
..++++|+|+||.+.+|+-++|+||||||||||.++|.|..+|. +|.|.+||.+++++++. +.+||.||+-.
T Consensus 346 --g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQdVe 420 (580)
T COG4618 346 --GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQDVE 420 (580)
T ss_pred --CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCcccce
Confidence 13356999999999999999999999999999999999999998 99999999999988764 78999999554
Q ss_pred CCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccc
Q 000913 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMV 316 (1226)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1226)
+ +..||.|||. |+. .....+.+.|+++....+ + -++.|++.+||.|
T Consensus 421 L-F~GTIaeNIa---Rf~-~~~d~~kIieAA~lAgvH---------------------------e--lIl~lP~GYdT~i 466 (580)
T COG4618 421 L-FDGTIAENIA---RFG-EEADPEKVIEAARLAGVH---------------------------E--LILRLPQGYDTRI 466 (580)
T ss_pred e-cCCcHHHHHH---hcc-ccCCHHHHHHHHHHcChH---------------------------H--HHHhCcCCccCcc
Confidence 4 4579999995 332 112233344444332211 1 1678999999999
Q ss_pred cccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEE
Q 000913 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1226)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1226)
|+.+. +||||||||+++||||+++|.+++||||-|+||+.....+.+.|.+... .++|+|++ + |++.+...+|+|+
T Consensus 467 G~~G~-~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvvi-a-HRPs~L~~~Dkil 542 (580)
T COG4618 467 GEGGA-TLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVVI-A-HRPSALASVDKIL 542 (580)
T ss_pred CCCCC-CCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEEE-e-cCHHHHhhcceee
Confidence 98765 6999999999999999999999999999999999999999999988643 45555554 3 4678999999999
Q ss_pred EEcCCeEEEecChhHHHHHH
Q 000913 397 LLSDGQIVYQGPRELVLEFF 416 (1226)
Q Consensus 397 lL~~G~iv~~G~~~~~~~~F 416 (1226)
+|++|++-.+|+++|++...
T Consensus 543 vl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 543 VLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred eecCChHHhcCCHHHHHHHh
Confidence 99999999999999998754
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=337.66 Aligned_cols=208 Identities=25% Similarity=0.344 Sum_probs=174.3
Q ss_pred ccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-------cceEEEecCCC
Q 000913 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHD 235 (1226)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d 235 (1226)
..+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 111 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCc
Confidence 3456999999999999999999999999999999999999998 9999999988754321 24699999999
Q ss_pred CCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccc
Q 000913 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1226)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1226)
.+++.+||+||+.++....+... .+....++.+++.+||++..++.
T Consensus 112 ~~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~ 157 (269)
T cd03294 112 ALLPHRTVLENVAFGLEVQGVPR----------------------------------AEREERAAEALELVGLEGWEHKY 157 (269)
T ss_pred ccCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhhCC
Confidence 88989999999998754322100 00112356678899998777765
Q ss_pred ccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcE
Q 000913 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1226)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1226)
++ .|||||||||+||+||+.+|++|||||||+|||+.+...+.+.|+++.+..+ ++||.++|+..++.+++|++
T Consensus 158 ~~-----~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tiii~tH~~~~~~~~~d~v 231 (269)
T cd03294 158 PD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQ-KTIVFITHDLDEALRLGDRI 231 (269)
T ss_pred cc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhcCEE
Confidence 54 6999999999999999999999999999999999999999999998765334 45555778888999999999
Q ss_pred EEEcCCeEEEecChhHHH
Q 000913 396 ILLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1226)
++|++|++++.|+++++.
T Consensus 232 ~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 232 AIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-36 Score=329.30 Aligned_cols=201 Identities=24% Similarity=0.336 Sum_probs=165.7
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-------cceEEEecCCCCC
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1226)
.++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|+++|+++..... ++.++|++|++.+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 45999999999999999999999999999999999999988 9999999998765432 2469999999888
Q ss_pred CCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 000913 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1226)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1226)
++.+||+||+.|.....+... .+....++.+++.+||++..++.+
T Consensus 99 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~- 143 (233)
T PRK11629 99 LPDFTALENVAMPLLIGKKKP----------------------------------AEINSRALEMLAAVGLEHRANHRP- 143 (233)
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh-
Confidence 999999999998654321100 001123567888999987666544
Q ss_pred ccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEE
Q 000913 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1226)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iil 397 (1226)
..|||||||||+||++++.+|+++||||||+|||+.++..+.+.|+++.+..+ ++||.++|+..++.. +|++++
T Consensus 144 ----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tvii~sH~~~~~~~-~~~~~~ 217 (233)
T PRK11629 144 ----SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQG-TAFLVVTHDLQLAKR-MSRQLE 217 (233)
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHh-hCEEEE
Confidence 46999999999999999999999999999999999999999999998764334 455556777777665 589999
Q ss_pred EcCCeEEEecCh
Q 000913 398 LSDGQIVYQGPR 409 (1226)
Q Consensus 398 L~~G~iv~~G~~ 409 (1226)
|++|++++.|+.
T Consensus 218 l~~G~i~~~~~~ 229 (233)
T PRK11629 218 MRDGRLTAELSL 229 (233)
T ss_pred EECCEEEEEecc
Confidence 999999998864
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=343.73 Aligned_cols=217 Identities=22% Similarity=0.414 Sum_probs=173.4
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCC-------------------Ccc
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------------------VPQ 225 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~-------------------~~~ 225 (1226)
.++|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|+++|.++.+. ..+
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 35999999999999999999999999999999999999998 99999999886532 123
Q ss_pred ceEEEecCCCC-CCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHH
Q 000913 226 RTAAYISQHDN-HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304 (1226)
Q Consensus 226 ~~~~yv~Q~d~-~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~ 304 (1226)
+.++||+|++. .+...||+||+.|+....+.. . .+....++.+++
T Consensus 116 ~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~ 161 (320)
T PRK13631 116 RRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVK-K---------------------------------SEAKKLAKFYLN 161 (320)
T ss_pred hcEEEEEECchhccccchHHHHHHhhHHhcCCC-H---------------------------------HHHHHHHHHHHH
Confidence 67999999862 344569999999875322110 0 011124567788
Q ss_pred HcCCc-ccccccccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEec
Q 000913 305 VLGLD-VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383 (1226)
Q Consensus 305 ~lgL~-~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q 383 (1226)
.+||+ ...+. .+..|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|+++.. . +++|+.++|
T Consensus 162 ~~gL~~~~~~~-----~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~-g~TiiivtH 234 (320)
T PRK13631 162 KMGLDDSYLER-----SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-N-NKTVFVITH 234 (320)
T ss_pred HcCCChhHhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEec
Confidence 99996 34443 3457999999999999999999999999999999999999999999998754 3 445556788
Q ss_pred ChhhHHhhcCcEEEEcCCeEEEecChhHHHH---HHHhcCCCCCC
Q 000913 384 PAPETYDLFDDIILLSDGQIVYQGPRELVLE---FFASMGFRCPK 425 (1226)
Q Consensus 384 ~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~---~F~~~Gf~cp~ 425 (1226)
+..++.+++|+|++|++|++++.|+++++.. .++..|+.+|.
T Consensus 235 d~~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 235 TMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred CHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 8888999999999999999999999987742 34455655544
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=351.19 Aligned_cols=208 Identities=26% Similarity=0.429 Sum_probs=174.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1226)
++|+|+||.+++||+++|+||||||||||||+|+|.++|+ +|+|.++|.++..... ++.++||+|+..+++.+|
T Consensus 17 ~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~t 93 (402)
T PRK09536 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFD 93 (402)
T ss_pred EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCC
Confidence 4999999999999999999999999999999999999998 9999999998765432 467999999998889999
Q ss_pred HHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 000913 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1226)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1226)
|+||+.++...... . +.. ...+....++++++.+||.+..++.+ +
T Consensus 94 v~e~v~~~~~~~~~--~---------------~~~-------------~~~~~~~~v~~~le~vgl~~~~~~~~-----~ 138 (402)
T PRK09536 94 VRQVVEMGRTPHRS--R---------------FDT-------------WTETDRAAVERAMERTGVAQFADRPV-----T 138 (402)
T ss_pred HHHHHHhccchhcc--c---------------ccC-------------CCHHHHHHHHHHHHHcCCchhhcCCh-----h
Confidence 99999986421100 0 000 00011235678899999988777654 5
Q ss_pred CCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCe
Q 000913 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1226)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1226)
.|||||||||.|||||+++|++|||||||+|||+.++..+++.|+++++ .+ ++|+.++|+..++.+++|++++|++|+
T Consensus 139 ~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g-~TIIivsHdl~~~~~~adrii~l~~G~ 216 (402)
T PRK09536 139 SLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DG-KTAVAAIHDLDLAARYCDELVLLADGR 216 (402)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cC-CEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999999875 44 456667889999999999999999999
Q ss_pred EEEecChhHHH
Q 000913 403 IVYQGPRELVL 413 (1226)
Q Consensus 403 iv~~G~~~~~~ 413 (1226)
+++.|++++++
T Consensus 217 iv~~G~~~ev~ 227 (402)
T PRK09536 217 VRAAGPPADVL 227 (402)
T ss_pred EEEecCHHHHh
Confidence 99999998864
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=339.29 Aligned_cols=214 Identities=25% Similarity=0.366 Sum_probs=181.0
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++. .+.+|+||||++++||++||+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYSG------------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeCC------------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 678888887731 2358999999999999999999999999999999999876 56899999998754
Q ss_pred h---hhhcceeeEeecCCC-CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 000913 936 Q---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1226)
Q Consensus 936 ~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgG 1011 (1226)
. ..+++.+|||+|++. .+...||.||+.+..... ..+.+..++.++++++.++|.+..++.+ ..||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHH
Confidence 2 235567899999974 334579999998765322 2344455567899999999988777763 579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 000913 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1226)
Q Consensus 1012 qrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~ 1090 (1226)
||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |++++.
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~ 219 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAY 219 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEE
Confidence 999999999999999999999999999999999999999999765 899999999987 57789999999986 689999
Q ss_pred CCC
Q 000913 1091 GPL 1093 (1226)
Q Consensus 1091 G~~ 1093 (1226)
|+.
T Consensus 220 g~~ 222 (277)
T PRK13652 220 GTV 222 (277)
T ss_pred CCH
Confidence 975
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=335.88 Aligned_cols=213 Identities=25% Similarity=0.353 Sum_probs=179.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++ ++.+|+|+||++++|++++|+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcc
Confidence 67788887763 2469999999999999999999999999999999999866 56899999998653
Q ss_pred h---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 000913 936 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1012 (1226)
Q Consensus 936 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGq 1012 (1226)
. ..+++.++|++|++.+++.+||+|++.+...... ...++.++.++++++.+++.+..++.+ ..|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHG---LSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccC---CCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHH
Confidence 2 2344679999999888788999999988543211 122333456889999999988777664 5799999
Q ss_pred HHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 000913 1013 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1226)
Q Consensus 1013 rqrl~ia~~L~------~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg 1085 (1226)
||||+||++|+ .+|++|+|||||+|||+.++..+++.|+++. ++|+|||+++|++. ++.+.+|++++|++ |
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G 217 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-G 217 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-C
Confidence 99999999999 5999999999999999999999999999987 67999999999986 47789999999986 6
Q ss_pred EEEEeCCC
Q 000913 1086 QEIYVGPL 1093 (1226)
Q Consensus 1086 ~~~y~G~~ 1093 (1226)
++++.|+.
T Consensus 218 ~i~~~~~~ 225 (258)
T PRK13548 218 RLVADGTP 225 (258)
T ss_pred EEEeeCCH
Confidence 88888875
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=332.39 Aligned_cols=219 Identities=23% Similarity=0.263 Sum_probs=176.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|.....+.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 67 (243)
T TIGR01978 1 LKIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLL 67 (243)
T ss_pred CeEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecC
Confidence 35678877763 24699999999999999999999999999999999998411146899999998754
Q ss_pred h---hhh-cceeeEeecCCCCCCCCCHHHHHHHHHHhhcC--C--CCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 000913 936 Q---ETF-ARISGYCEQNDIHSPFVTIYESLLFSAWLRLS--P--EVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 1006 (1226)
Q Consensus 936 ~---~~~-~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~--~--~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~ 1006 (1226)
. ... +..++|++|++.+++.+|++|++.+....... . ..+..+..+.+.++++.++|. .+.+..++ .
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 143 (243)
T TIGR01978 68 ELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----E 143 (243)
T ss_pred CCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----c
Confidence 2 122 23489999999999999999999876432211 0 112233446688999999997 45554432 2
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-cCeEEEEecCc
Q 000913 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGG 1085 (1226)
Q Consensus 1007 ~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~-~D~v~ll~~Gg 1085 (1226)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|+++ .+.+. +|++++|++ |
T Consensus 144 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G 221 (243)
T TIGR01978 144 GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-G 221 (243)
T ss_pred CcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-C
Confidence 49999999999999999999999999999999999999999999999877999999999986 46666 799999985 7
Q ss_pred EEEEeCCC
Q 000913 1086 QEIYVGPL 1093 (1226)
Q Consensus 1086 ~~~y~G~~ 1093 (1226)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (243)
T TIGR01978 222 RIVKSGDV 229 (243)
T ss_pred EEEEecCH
Confidence 89998874
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=342.23 Aligned_cols=205 Identities=26% Similarity=0.374 Sum_probs=169.1
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCC----------------------
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF---------------------- 222 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~---------------------- 222 (1226)
..+|+|||+.|++|++++|+||||||||||+++|+|.++|+ +|+|+++|.+....
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKK 96 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccc
Confidence 35999999999999999999999999999999999999998 99999998764210
Q ss_pred -----CccceEEEecCCC-CCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhH
Q 000913 223 -----VPQRTAAYISQHD-NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEAN 296 (1226)
Q Consensus 223 -----~~~~~~~yv~Q~d-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 296 (1226)
..++.+|||+|++ ..++..||+|||.|+....+... ++..
T Consensus 97 ~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~----------------------------------~~~~ 142 (305)
T PRK13651 97 IKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSK----------------------------------EEAK 142 (305)
T ss_pred cchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCH----------------------------------HHHH
Confidence 1135799999985 34556899999998764332110 0112
Q ss_pred HHHHHHHHHcCCc-ccccccccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCC
Q 000913 297 VITDYYLKVLGLD-VCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSG 375 (1226)
Q Consensus 297 ~~~~~~l~~lgL~-~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~ 375 (1226)
..++.+++.+||+ +..+.. +..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.. . +
T Consensus 143 ~~~~~~l~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~-g 215 (305)
T PRK13651 143 KRAAKYIELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-Q-G 215 (305)
T ss_pred HHHHHHHHHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-C-C
Confidence 2456788999996 455544 457999999999999999999999999999999999999999999998763 3 4
Q ss_pred eEEEEEecChhhHHhhcCcEEEEcCCeEEEecChhHHH
Q 000913 376 TAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 376 t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~ 413 (1226)
++||.++|+..++.+++|+|++|++|++++.|+++++.
T Consensus 216 ~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 216 KTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred CEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 45666888999999999999999999999999998864
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=311.96 Aligned_cols=210 Identities=22% Similarity=0.379 Sum_probs=180.8
Q ss_pred ccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCcc----ceEEEecCCCCCC
Q 000913 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHI 238 (1226)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~ 238 (1226)
+++++++|||+.+++||+++|+|||||||||.+.++.|+..|+ +|+|.+||.+++.+... .-+||+||++..|
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIF 91 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQEASIF 91 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccccchHh
Confidence 4566999999999999999999999999999999999999999 99999999999887643 4589999999999
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 000913 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1226)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1226)
-.|||+|||....+.+.... ...+.+...+.+|+.|++.++++..-
T Consensus 92 r~LtV~dNi~~vlE~~~~d~--------------------------------~~~~~~~~l~~LL~ef~i~hlr~~~a-- 137 (243)
T COG1137 92 RKLTVEDNIMAVLEIREKDL--------------------------------KKAERKEELDALLEEFHITHLRDSKA-- 137 (243)
T ss_pred hcCcHHHHHHHHHhhhhcch--------------------------------hHHHHHHHHHHHHHHhchHHHhcCcc--
Confidence 99999999987665432110 00122345678999999999998653
Q ss_pred cccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEE
Q 000913 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1226)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1226)
-.||||||+|+.|||||+.+|+.++||||++|+||.+..+|.+.++.+.. . +.-|+..-|...|+...+||.+++
T Consensus 138 ---~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~-r-giGvLITDHNVREtL~i~dRaYIi 212 (243)
T COG1137 138 ---YSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD-R-GIGVLITDHNVRETLDICDRAYII 212 (243)
T ss_pred ---cccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh-C-CceEEEccccHHHHHhhhheEEEE
Confidence 35999999999999999999999999999999999999999999998865 3 444555678899999999999999
Q ss_pred cCCeEEEecChhHHHH
Q 000913 399 SDGQIVYQGPRELVLE 414 (1226)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1226)
++|++..+|+++++.+
T Consensus 213 ~~G~vla~G~p~ei~~ 228 (243)
T COG1137 213 SDGKVLAEGSPEEIVN 228 (243)
T ss_pred ecCeEEecCCHHHHhc
Confidence 9999999999998864
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=334.16 Aligned_cols=215 Identities=21% Similarity=0.237 Sum_probs=177.1
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCc---eEEEEEEEcC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1226)
.++++|+++.++ ++.+|+|+||++++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 588999988774 235899999999999999999999999999999999986531 2479999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCC----cccccccCC
Q 000913 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSLVGL 1002 (1226)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~~g~ 1002 (1226)
.++.. ..+++.++|++|++.+++ +||+||+.|....+. .......++.+.++++.+++. +..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTN--- 147 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCC---
Confidence 87531 234667999999988774 899999998654321 112333456688889998874 233433
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 000913 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1226)
Q Consensus 1003 ~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~ 1082 (1226)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++. +++|||+++|+++ ++.+.+|++++|+
T Consensus 148 --~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l~ 223 (254)
T PRK14273 148 --ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFFL 223 (254)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 46799999999999999999999999999999999999999999999996 4799999999987 4778899999998
Q ss_pred cCcEEEEeCCC
Q 000913 1083 RGGQEIYVGPL 1093 (1226)
Q Consensus 1083 ~Gg~~~y~G~~ 1093 (1226)
+ |+++..|+.
T Consensus 224 ~-G~i~~~g~~ 233 (254)
T PRK14273 224 N-GCIEEESST 233 (254)
T ss_pred C-CEEEEeCCH
Confidence 6 789988874
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=335.96 Aligned_cols=217 Identities=22% Similarity=0.267 Sum_probs=180.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++ ++.+|+|+|+++++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEEC
Confidence 478889988763 2469999999999999999999999999999999999876 5689999999876
Q ss_pred Chh---h-hcceeeEeecCCCCCCCCCHHHHHHHHHHhhcC----------C--CCCHHHHHHHHHHHHHHcCCCccccc
Q 000913 935 KQE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLS----------P--EVDSETRKMFIDEVMELVELNPLRQS 998 (1226)
Q Consensus 935 ~~~---~-~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~----------~--~~~~~~~~~~v~~~l~~l~l~~~~~~ 998 (1226)
... . .+..++|++|++.+++.+||+||+.+....... . .....+..+.+.++++.+++.+..+.
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 431 1 233589999999999999999999986432110 0 00112234567888999999877776
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCe
Q 000913 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDE 1077 (1226)
Q Consensus 999 ~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~ 1077 (1226)
.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|+++ ++.+.+|+
T Consensus 150 ~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 QA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 53 579999999999999999999999999999999999999999999999765 899999999987 57788999
Q ss_pred EEEEecCcEEEEeCCC
Q 000913 1078 LFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1078 v~ll~~Gg~~~y~G~~ 1093 (1226)
+++|++ |++++.|+.
T Consensus 224 i~~l~~-g~i~~~~~~ 238 (255)
T PRK11300 224 IYVVNQ-GTPLANGTP 238 (255)
T ss_pred EEEEEC-CeEEecCCH
Confidence 999986 789998875
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=333.82 Aligned_cols=217 Identities=24% Similarity=0.265 Sum_probs=179.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCc---eEEEEEEEcC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1226)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 377889988774 246999999999999999999999999999999999986532 3589999999
Q ss_pred ccCC-----hhhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCC
Q 000913 932 YPKK-----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1226)
Q Consensus 932 ~~~~-----~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 1002 (1226)
.++. ...+++.++|++|++.+++.+||.||+.+....+.. ....++.++.++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 146 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDY--- 146 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccC---
Confidence 8763 123456799999999999999999999886543211 1123344456888999999853 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 000913 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1226)
Q Consensus 1003 ~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~ 1082 (1226)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 222 (253)
T PRK14267 147 --PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLY 222 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEE
Confidence 467999999999999999999999999999999999999999999999865 699999999987 4778899999998
Q ss_pred cCcEEEEeCCC
Q 000913 1083 RGGQEIYVGPL 1093 (1226)
Q Consensus 1083 ~Gg~~~y~G~~ 1093 (1226)
+ |++++.|+.
T Consensus 223 ~-G~i~~~~~~ 232 (253)
T PRK14267 223 L-GKLIEVGPT 232 (253)
T ss_pred C-CEEEEeCCH
Confidence 6 789998874
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-36 Score=343.85 Aligned_cols=208 Identities=23% Similarity=0.246 Sum_probs=173.9
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc------cceEEEecCCC--C
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHD--N 236 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d--~ 236 (1226)
..+|+|||+.|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++..... ++.++||+|++ .
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~ 110 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhh
Confidence 56999999999999999999999999999999999999987 9999999998865432 35799999986 5
Q ss_pred CCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-cccccc
Q 000913 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTM 315 (1226)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1226)
+++.+||.||+.+..+....+.. ..+....+..+++.+||. ...+
T Consensus 111 l~p~~tv~~~i~~~l~~~~~~~~--------------------------------~~~~~~~~~~~l~~vgl~~~~~~-- 156 (331)
T PRK15079 111 LNPRMTIGEIIAEPLRTYHPKLS--------------------------------RQEVKDRVKAMMLKVGLLPNLIN-- 156 (331)
T ss_pred cCCCCCHHHHHHHHHHHhccCCC--------------------------------HHHHHHHHHHHHHHcCCChHHhc--
Confidence 88899999999987543210000 001123456788999994 3444
Q ss_pred ccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcE
Q 000913 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1226)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1226)
..+..|||||||||+||+||+.+|++||+||||+|||..++.+|++.|+++.+. .+++++.++|+...+.+++|+|
T Consensus 157 ---~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~~~til~iTHdl~~~~~~~dri 232 (331)
T PRK15079 157 ---RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE-MGLSLIFIAHDLAVVKHISDRV 232 (331)
T ss_pred ---CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEE
Confidence 445679999999999999999999999999999999999999999999988653 3456666899999999999999
Q ss_pred EEEcCCeEEEecChhHHH
Q 000913 396 ILLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1226)
++|++|++++.|+.+++.
T Consensus 233 ~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 233 LVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEEECCEEEEEcCHHHHH
Confidence 999999999999998874
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=376.04 Aligned_cols=253 Identities=19% Similarity=0.226 Sum_probs=195.3
Q ss_pred hHhhHHHHHHhhhccccChHHHHHHHHHHhhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhh
Q 000913 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1226)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1226)
.++.....+|+.++++.+++. . +....+....+++|+|+++.++.
T Consensus 308 ~~~~~~s~~ri~~~l~~~~~~------~--~~~~~~~~~~~i~~~~v~f~y~~--------------------------- 352 (592)
T PRK10790 308 LQQAVVAGERVFELMDGPRQQ------Y--GNDDRPLQSGRIDIDNVSFAYRD--------------------------- 352 (592)
T ss_pred HHHHHHHHHHHHHHhcCCCcc------C--CCCccCCCCCeEEEEEEEEEeCC---------------------------
Confidence 467778888888877655431 0 00011112346999999998731
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCC
Q 000913 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1226)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1226)
+ .++|+|+|++++|||.++|+|+||||||||+++|+|+++|+ +|+|.+||.++++..+ ++.++||+|+
T Consensus 353 ---~---~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~ 423 (592)
T PRK10790 353 ---D---NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQD 423 (592)
T ss_pred ---C---CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccC
Confidence 1 23999999999999999999999999999999999999998 9999999999887654 4789999998
Q ss_pred CCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 000913 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1226)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1226)
+.+|+ .|++|||.++.. ...+.+.++++. .+ .++.++ .|++..||
T Consensus 424 ~~lF~-~Ti~~NI~~~~~-----~~d~~i~~a~~~---~g------------------------l~~~i~--~lp~Gldt 468 (592)
T PRK10790 424 PVVLA-DTFLANVTLGRD-----ISEEQVWQALET---VQ------------------------LAELAR--SLPDGLYT 468 (592)
T ss_pred Ccccc-chHHHHHHhCCC-----CCHHHHHHHHHH---cC------------------------cHHHHH--hccccccc
Confidence 87666 599999998631 111222222211 11 011122 36778899
Q ss_pred cccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCc
Q 000913 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1226)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1226)
.+|+.+. .||||||||++|||||+++|+|++||||||+||+.++..|.+.|++.. .++|+|++.|++ +....+|+
T Consensus 469 ~i~e~g~-~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~--~~~tvIivtHr~--~~l~~~D~ 543 (592)
T PRK10790 469 PLGEQGN-NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR--EHTTLVVIAHRL--STIVEADT 543 (592)
T ss_pred cccCCCC-CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--CCCEEEEEecch--HHHHhCCE
Confidence 9998654 699999999999999999999999999999999999999999998864 346666654443 66778999
Q ss_pred EEEEcCCeEEEecChhHHHH
Q 000913 395 IILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1226)
|++|++|+++..|+++++.+
T Consensus 544 ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 544 ILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred EEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999864
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=388.13 Aligned_cols=261 Identities=22% Similarity=0.273 Sum_probs=196.6
Q ss_pred hHhhHHHHHHhhhccccChHHHHHHHHHHhhhcCC-CCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhh
Q 000913 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGI-DLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLR 156 (1226)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 156 (1226)
.++....++|+.++++.+++.-......+...... +.....++|+||++.++.
T Consensus 436 ~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~-------------------------- 489 (710)
T TIGR03796 436 LQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSP-------------------------- 489 (710)
T ss_pred HHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCC--------------------------
Confidence 56788889999988877655100000000000000 112357999999999842
Q ss_pred hcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecC
Q 000913 157 IIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQ 233 (1226)
Q Consensus 157 ~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q 233 (1226)
..+++|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|.+||.+++++.. ++.++||+|
T Consensus 490 ------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q 560 (710)
T TIGR03796 490 ------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQ 560 (710)
T ss_pred ------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEec
Confidence 1134999999999999999999999999999999999999998 9999999999877654 578999999
Q ss_pred CCCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccc
Q 000913 234 HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (1226)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1226)
++.+| +.|++|||.++. +....+.+.++++.. + .+.. +..|+...|
T Consensus 561 ~~~lf-~gTi~eNi~l~~----~~~~~~~i~~al~~~---~------------------------l~~~--i~~lp~gl~ 606 (710)
T TIGR03796 561 DIFLF-EGTVRDNLTLWD----PTIPDADLVRACKDA---A------------------------IHDV--ITSRPGGYD 606 (710)
T ss_pred CChhh-hccHHHHhhCCC----CCCCHHHHHHHHHHh---C------------------------CHHH--HHhCcCccc
Confidence 77655 679999998752 111222222222211 1 0111 224677889
Q ss_pred ccccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcC
Q 000913 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (1226)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 393 (1226)
|.+|+.+ .+||||||||++|||||+++|++|+||||||+||+.++..|.+.|++ .++|+|+ ++|. .++...+|
T Consensus 607 t~i~e~G-~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~Ii-itHr-l~~i~~~D 679 (710)
T TIGR03796 607 AELAEGG-ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCII-VAHR-LSTIRDCD 679 (710)
T ss_pred ceeccCC-CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEE-EecC-HHHHHhCC
Confidence 9999876 47999999999999999999999999999999999999999999975 3556665 4444 35667799
Q ss_pred cEEEEcCCeEEEecChhHHHH
Q 000913 394 DIILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 394 ~iilL~~G~iv~~G~~~~~~~ 414 (1226)
+|++|++|+++++|+++++++
T Consensus 680 ~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 680 EIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred EEEEEeCCEEEEecCHHHHHH
Confidence 999999999999999999875
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=379.09 Aligned_cols=257 Identities=22% Similarity=0.360 Sum_probs=193.9
Q ss_pred hHhhHHHHHHhhhccccChHHHHHHHHHHhhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhh
Q 000913 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1226)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1226)
.++.+...+|+.++.+.+++. ..+....+.+..+|+++||++.++.
T Consensus 308 ~~~~~~~~~ri~~~~~~~~~~-------~~~~~~~~~~~~~i~~~~vsf~y~~--------------------------- 353 (582)
T PRK11176 308 FQRGMAACQTLFAILDLEQEK-------DEGKRVIERAKGDIEFRNVTFTYPG--------------------------- 353 (582)
T ss_pred HHHHHHHHHHHHHHhcCCCcC-------CCCCcCCCCCCCeEEEEEEEEecCC---------------------------
Confidence 455666777777766544330 0011111222346999999998742
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCC
Q 000913 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1226)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1226)
..+++|+|+|++|+||+.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|+
T Consensus 354 -----~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~ 425 (582)
T PRK11176 354 -----KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQN 425 (582)
T ss_pred -----CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccC
Confidence 1134999999999999999999999999999999999999998 9999999999877654 4789999998
Q ss_pred CCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 000913 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1226)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1226)
+.+| +.|++|||.++..- ....+.+.++++.. + .+..+ -.|++..||
T Consensus 426 ~~lf-~~Ti~~Ni~~~~~~---~~~~~~i~~al~~~---~------------------------l~~~i--~~lp~Gldt 472 (582)
T PRK11176 426 VHLF-NDTIANNIAYARTE---QYSREQIEEAARMA---Y------------------------AMDFI--NKMDNGLDT 472 (582)
T ss_pred ceee-cchHHHHHhcCCCC---CCCHHHHHHHHHHh---C------------------------cHHHH--HhcccccCc
Confidence 7666 57999999876310 01122222222111 0 11111 236788899
Q ss_pred cccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCc
Q 000913 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1226)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1226)
.+|+.+ +.||||||||++|||||+++|++++||||||+||+.++..+++.|++.. .++|+|++ +|. .+..+.||+
T Consensus 473 ~ig~~g-~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~V-tHr-~~~~~~~D~ 547 (582)
T PRK11176 473 VIGENG-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLVI-AHR-LSTIEKADE 547 (582)
T ss_pred eeCCCC-CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEE-ecc-hHHHHhCCE
Confidence 999875 4699999999999999999999999999999999999999999998753 34566554 444 367788999
Q ss_pred EEEEcCCeEEEecChhHHHH
Q 000913 395 IILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1226)
|++|++|+++++|+++++.+
T Consensus 548 Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 548 ILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred EEEEECCEEEEeCCHHHHHh
Confidence 99999999999999998864
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=334.19 Aligned_cols=212 Identities=27% Similarity=0.379 Sum_probs=170.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC------ccceEEEecCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (1226)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 16 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 92 (243)
T TIGR02315 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIE 92 (243)
T ss_pred ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccc
Confidence 4999999999999999999999999999999999999988 999999998875432 2457999999988899
Q ss_pred CCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 000913 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1226)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1226)
.+||+||+.++..... ... .... .. ...+....++.+++.+||.+..+..
T Consensus 93 ~~tv~~~l~~~~~~~~--~~~---~~~~------~~---------------~~~~~~~~~~~~l~~~~l~~~~~~~---- 142 (243)
T TIGR02315 93 RLTVLENVLHGRLGYK--PTW---RSLL------GR---------------FSEEDKERALSALERVGLADKAYQR---- 142 (243)
T ss_pred cccHHHHHhhcccccc--cch---hhhh------cc---------------ccHHHHHHHHHHHHHcCcHhhhcCC----
Confidence 9999999987532110 000 0000 00 0001123456778899998766654
Q ss_pred ccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEc
Q 000913 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1226)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1226)
+..|||||||||+||+||+.+|++|+|||||+|||+.+...+.+.|+++.+.. +++|+.++|+..++.+++|++++|+
T Consensus 143 -~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiii~tH~~~~~~~~~d~v~~l~ 220 (243)
T TIGR02315 143 -ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKED-GITVIINLHQVDLAKKYADRIVGLK 220 (243)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCeEEEEE
Confidence 45699999999999999999999999999999999999999999999876533 4455557788888999999999999
Q ss_pred CCeEEEecChhHH
Q 000913 400 DGQIVYQGPRELV 412 (1226)
Q Consensus 400 ~G~iv~~G~~~~~ 412 (1226)
+|++++.|+++++
T Consensus 221 ~G~i~~~~~~~~~ 233 (243)
T TIGR02315 221 AGEIVFDGAPSEL 233 (243)
T ss_pred CCEEEecCCHHHh
Confidence 9999999998765
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=387.81 Aligned_cols=257 Identities=24% Similarity=0.310 Sum_probs=197.1
Q ss_pred hHhhHHHHHHhhhccccChHHHHHHHHHHhhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhh
Q 000913 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1226)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1226)
.++.+..++|+.++++.++|. .+..+....+....+|+|+||++.++.
T Consensus 438 ~~~~~~~~~ri~~~l~~~~e~-----~~~~~~~~~~~~~~~I~~~~vsf~y~~--------------------------- 485 (708)
T TIGR01193 438 LQAARVANNRLNEVYLVDSEF-----INKKKRTELNNLNGDIVINDVSYSYGY--------------------------- 485 (708)
T ss_pred HHHHHHHHHHHHHHHcCCCcc-----cccccccCCCCCCCcEEEEEEEEEcCC---------------------------
Confidence 567888889998888766551 110000111223457999999999831
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCC
Q 000913 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1226)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1226)
.+++|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|++||.++++... ++.++||+|+
T Consensus 486 ------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 556 (708)
T TIGR01193 486 ------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQE 556 (708)
T ss_pred ------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecC
Confidence 124899999999999999999999999999999999999998 9999999999877654 4789999998
Q ss_pred CCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 000913 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1226)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1226)
+.+| +.||+|||.++.+. ....+.+.++++... .++. +..|+...||
T Consensus 557 ~~lf-~gTI~eNi~l~~~~---~~~~~~i~~a~~~a~---------------------------l~~~--i~~lp~gldt 603 (708)
T TIGR01193 557 PYIF-SGSILENLLLGAKE---NVSQDEIWAACEIAE---------------------------IKDD--IENMPLGYQT 603 (708)
T ss_pred ceeh-hHHHHHHHhccCCC---CCCHHHHHHHHHHhC---------------------------CHHH--HHhcccccCc
Confidence 7655 56999999986321 111222222222111 0111 2247788899
Q ss_pred cccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCc
Q 000913 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1226)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1226)
.||+.+ .+||||||||++||||++++|++|+||||||+||+.++..+.+.|+++ .++|+|+ ++|.. ++.+.+|+
T Consensus 604 ~i~e~G-~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~Ii-itHr~-~~~~~~D~ 677 (708)
T TIGR01193 604 ELSEEG-SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIF-VAHRL-SVAKQSDK 677 (708)
T ss_pred EecCCC-CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEE-Eecch-HHHHcCCE
Confidence 999865 469999999999999999999999999999999999999999999863 3456555 44443 56788999
Q ss_pred EEEEcCCeEEEecChhHHHH
Q 000913 395 IILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1226)
|++|++|++++.|+++++.+
T Consensus 678 i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 678 IIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999864
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=328.63 Aligned_cols=205 Identities=26% Similarity=0.367 Sum_probs=169.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc--cceEEEecCCCCCCCCCCH
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP--QRTAAYISQHDNHIGEMTV 243 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~--~~~~~yv~Q~d~~~~~lTV 243 (1226)
++|+|+|+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... .+.++|++|++.+++.+||
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~ 91 (236)
T TIGR03864 15 RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSV 91 (236)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcH
Confidence 4999999999999999999999999999999999999998 9999999988754322 2579999999888899999
Q ss_pred HHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 000913 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1226)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1226)
+||+.+.....+... .+....++.+++.+||+...++.++ .
T Consensus 92 ~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 132 (236)
T TIGR03864 92 RQNLRYHAALHGLSR----------------------------------AEARERIAALLARLGLAERADDKVR-----E 132 (236)
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcCChh-----h
Confidence 999987653321100 0011234667888999877666554 6
Q ss_pred CChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeE
Q 000913 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1226)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1226)
||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++++..+.| |+.++|+..++. .+|+|++|++|++
T Consensus 133 LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~t-iii~sH~~~~~~-~~d~i~~l~~G~i 210 (236)
T TIGR03864 133 LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLS-VLWATHLVDEIE-ADDRLVVLHRGRV 210 (236)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCE-EEEEecChhhHh-hCCEEEEEeCCeE
Confidence 99999999999999999999999999999999999999999999876433444 555677777775 5999999999999
Q ss_pred EEecChhHHHH
Q 000913 404 VYQGPRELVLE 414 (1226)
Q Consensus 404 v~~G~~~~~~~ 414 (1226)
++.|+.+++.+
T Consensus 211 ~~~~~~~~~~~ 221 (236)
T TIGR03864 211 LADGAAAELRG 221 (236)
T ss_pred EEeCCHHHHHH
Confidence 99999887653
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-36 Score=339.21 Aligned_cols=206 Identities=21% Similarity=0.315 Sum_probs=169.3
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC-------ccceEEEecCCC-C
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------PQRTAAYISQHD-N 236 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~-------~~~~~~yv~Q~d-~ 236 (1226)
+++|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++||+|++ .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 34999999999999999999999999999999999999998 999999999875421 246799999985 2
Q ss_pred CCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-cccccc
Q 000913 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTM 315 (1226)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1226)
.+...||+||+.|+....+... .+....++.+++.+||. ...++.
T Consensus 97 ~l~~~tv~e~i~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 142 (286)
T PRK13646 97 QLFEDTVEREIIFGPKNFKMNL----------------------------------DEVKNYAHRLLMDLGFSRDVMSQS 142 (286)
T ss_pred ccchhhHHHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhhCC
Confidence 3334699999998753321100 01122456788899996 455544
Q ss_pred ccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcE
Q 000913 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1226)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1226)
++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++... .+++|+.++|+..++.+++|+|
T Consensus 143 -----~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvl~vtH~~~~~~~~~dri 216 (286)
T PRK13646 143 -----PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD-ENKTIILVSHDMNEVARYADEV 216 (286)
T ss_pred -----cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEE
Confidence 4579999999999999999999999999999999999999999999987643 3455666788888999999999
Q ss_pred EEEcCCeEEEecChhHHH
Q 000913 396 ILLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1226)
++|++|++++.|+++++.
T Consensus 217 ~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 217 IVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999988764
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=332.12 Aligned_cols=215 Identities=25% Similarity=0.315 Sum_probs=178.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++ .+.+|+|+||++++|++++|+|+|||||||||++|+|... +.+|+|.++|.+..
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecC
Confidence 56788877763 2469999999999999999999999999999999999866 46899999998754
Q ss_pred hh----hhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcC--C---CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 000913 936 QE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS--P---EVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1226)
Q Consensus 936 ~~----~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~--~---~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 1006 (1226)
.. ..++.++|++|++.+++.+||+||+.+....... . ....+..+++++++++.+++.+..+..+ .
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----G 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----h
Confidence 21 1234699999999999999999999886432100 0 0112334567889999999988776653 5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 000913 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1226)
Q Consensus 1007 ~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~ 1086 (1226)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.||++++|++ |+
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~ 219 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GS 219 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-Ce
Confidence 7999999999999999999999999999999999999999999999875 799999999987 47788999999986 68
Q ss_pred EEEeCCC
Q 000913 1087 EIYVGPL 1093 (1226)
Q Consensus 1087 ~~y~G~~ 1093 (1226)
++..|+.
T Consensus 220 ~~~~~~~ 226 (242)
T TIGR03411 220 VLAEGSL 226 (242)
T ss_pred EEeeCCH
Confidence 8888874
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=324.62 Aligned_cols=194 Identities=26% Similarity=0.390 Sum_probs=164.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCC-CccceEEEecCCCCCCCCCCHH
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-VPQRTAAYISQHDNHIGEMTVR 244 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~-~~~~~~~yv~Q~d~~~~~lTV~ 244 (1226)
++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++||+|++.+++.+||+
T Consensus 14 ~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (208)
T cd03268 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTAR 90 (208)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcHH
Confidence 4999999999999999999999999999999999999988 99999999876542 1235799999998889999999
Q ss_pred HHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 000913 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1226)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1226)
||+.+.....+. ....++.+++.+||++..++.+ ..|
T Consensus 91 e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~L 127 (208)
T cd03268 91 ENLRLLARLLGI--------------------------------------RKKRIDEVLDVVGLKDSAKKKV-----KGF 127 (208)
T ss_pred HHHHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHhhhH-----hhC
Confidence 999886532210 0112456788899987666554 469
Q ss_pred ChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEE
Q 000913 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1226)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1226)
||||||||+||++++.+|++++|||||+|||+.+...+.+.|+++.+ .+. +|+.++|+..++.+++|++++|++|+++
T Consensus 128 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~-tii~~tH~~~~~~~~~d~v~~l~~g~i~ 205 (208)
T cd03268 128 SLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGI-TVLISSHLLSEIQKVADRIGIINKGKLI 205 (208)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCC-EEEEEcCCHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998764 344 4555778888999999999999999998
Q ss_pred Eec
Q 000913 405 YQG 407 (1226)
Q Consensus 405 ~~G 407 (1226)
+.|
T Consensus 206 ~~g 208 (208)
T cd03268 206 EEG 208 (208)
T ss_pred ecC
Confidence 765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=333.78 Aligned_cols=214 Identities=24% Similarity=0.292 Sum_probs=177.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCC---ceEEEEEEEcC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITISG 931 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~g 931 (1226)
.++++|+++.++ ++.+|+|+||+|++||++||+|+||||||||+++|+|..++ .+.+|+|.++|
T Consensus 12 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 588899988763 24699999999999999999999999999999999998652 13589999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCC
Q 000913 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1226)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 1002 (1226)
.++.. ..+++.++|++|++.+++ +|++||+.|....+ ..+.++.++.++++++.+++.+ ..++.
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 151 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSP--- 151 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCC---
Confidence 87532 234567999999988877 89999999865432 1233444556888999998843 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 000913 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1226)
Q Consensus 1003 ~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~ 1082 (1226)
+..|||||||||+||++|+.+|+||||||||+|||+.++..+++.|+++.+ |+|||+++|++. ++.+.+|++++|+
T Consensus 152 --~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~ 227 (258)
T PRK14268 152 --ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFL 227 (258)
T ss_pred --hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999864 899999999986 4778899999998
Q ss_pred cCcEEEEeCCC
Q 000913 1083 RGGQEIYVGPL 1093 (1226)
Q Consensus 1083 ~Gg~~~y~G~~ 1093 (1226)
+ |++++.|+.
T Consensus 228 ~-G~i~~~~~~ 237 (258)
T PRK14268 228 M-GELIEFGQT 237 (258)
T ss_pred C-CEEEEeCCH
Confidence 6 789999874
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=326.42 Aligned_cols=208 Identities=25% Similarity=0.339 Sum_probs=172.0
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh
Q 000913 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1226)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1226)
.++|+++.++ .+. .|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~ 64 (211)
T cd03298 2 RLDKIRFSYG-------------EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTA 64 (211)
T ss_pred EEEeEEEEeC-------------CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCc
Confidence 4677777663 122 29999999999999999999999999999999876 568999999987643
Q ss_pred h-hhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 000913 937 E-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1015 (1226)
Q Consensus 937 ~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqr 1015 (1226)
. ..++.++|++|++.+++.+||+||+.+....+. .. .++.++.++++++.+++.+..+..+ ..||||||||
T Consensus 65 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 136 (211)
T cd03298 65 APPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQR 136 (211)
T ss_pred CCHhHccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHH
Confidence 1 234679999999998889999999987543211 11 1233456889999999988777663 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 000913 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1226)
Q Consensus 1016 l~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G 1091 (1226)
++||++|+.+|++|+|||||+|||+.++..+++.|+++++ .|+|||+++|++. ++.+.+|++++|++ |+++..|
T Consensus 137 v~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 137 VALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeecC
Confidence 9999999999999999999999999999999999999875 4899999999986 47788999999986 6776543
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=326.79 Aligned_cols=198 Identities=30% Similarity=0.444 Sum_probs=166.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC--ccceEEEecCCCCCCCCCCH
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 243 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1226)
++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 5999999999999999999999999999999999999998 999999998875421 23679999999988999999
Q ss_pred HHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 000913 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1226)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1226)
+||+.+.....+... .+....++.+++.+||++..+..+ +.
T Consensus 96 ~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 136 (218)
T cd03266 96 RENLEYFAGLYGLKG----------------------------------DELTARLEELADRLGMEELLDRRV-----GG 136 (218)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhhhh-----hh
Confidence 999987654322100 001224567889999987766554 46
Q ss_pred CChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeE
Q 000913 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1226)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1226)
|||||||||+||+|++.+|++++|||||+|||+.+...+.+.|+++.. .+ .+||.++|+..++..++|++++|++|++
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~tH~~~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LG-KCILFSTHIMQEVERLCDRVVVLHRGRV 214 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998754 34 4555577888899999999999999999
Q ss_pred EEec
Q 000913 404 VYQG 407 (1226)
Q Consensus 404 v~~G 407 (1226)
++.|
T Consensus 215 ~~~~ 218 (218)
T cd03266 215 VYEG 218 (218)
T ss_pred eecC
Confidence 8764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=339.04 Aligned_cols=215 Identities=26% Similarity=0.299 Sum_probs=181.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++. ..+.+|+|+|++|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 3788999887742 12359999999999999999999999999999999999876 4689999999876
Q ss_pred Ch---hhhcceeeEeecCCC-CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 000913 935 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1226)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSg 1010 (1226)
.. ...++.+||++|++. .++..||.||+.+..... ..+.++.++++.++++.++|.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~ 143 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSG 143 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCH
Confidence 43 234567999999973 566789999998865433 1234455667899999999988877764 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 000913 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1226)
Q Consensus 1011 Gqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y 1089 (1226)
|||||++||++|+.+|+||||||||+|||+.++..+++.|++++++ |+|||+++|++.. + +.+|++++|.+ |++++
T Consensus 144 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~-~~~d~i~~l~~-G~i~~ 220 (279)
T PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-A-AQADRVIVMNK-GEILE 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-H-HcCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 8999999999863 5 46999999986 68999
Q ss_pred eCCC
Q 000913 1090 VGPL 1093 (1226)
Q Consensus 1090 ~G~~ 1093 (1226)
.|+.
T Consensus 221 ~g~~ 224 (279)
T PRK13635 221 EGTP 224 (279)
T ss_pred ECCH
Confidence 9975
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=334.70 Aligned_cols=216 Identities=25% Similarity=0.344 Sum_probs=180.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++ ++.+|+|+||++++|++++|+|+|||||||||++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhH
Confidence 66788887763 2469999999999999999999999999999999999865 46899999998653
Q ss_pred h---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHh--hcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 000913 936 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWL--RLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1226)
Q Consensus 936 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~l--r~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSg 1010 (1226)
. ..+++.++|++|+..+++.+|+.|++.++... .... ...+..++.++++++.+++.+..++. +..|||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 141 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWG-RLSAEDNARVNQAMEQTRINHLADRR-----LTDLSG 141 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhcc-CCCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCH
Confidence 2 23455699999998888889999999875311 1111 11123345678899999998777766 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 000913 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1226)
Q Consensus 1011 Gqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~ 1090 (1226)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.
T Consensus 142 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~ 219 (255)
T PRK11231 142 GQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQ 219 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEE
Confidence 9999999999999999999999999999999999999999998777999999999987 58889999999986 688888
Q ss_pred CCCC
Q 000913 1091 GPLG 1094 (1226)
Q Consensus 1091 G~~~ 1094 (1226)
|+..
T Consensus 220 ~~~~ 223 (255)
T PRK11231 220 GTPE 223 (255)
T ss_pred cCHH
Confidence 8753
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=322.02 Aligned_cols=195 Identities=41% Similarity=0.733 Sum_probs=166.9
Q ss_pred eEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHH
Q 000913 118 EVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLA 197 (1226)
Q Consensus 118 ~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~ 197 (1226)
.+.|+||++.++.. +..+.+|+|+|+.+++|++++|+|||||||||||++
T Consensus 3 ~~~~~~~~~~~~~~------------------------------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~ 52 (202)
T cd03233 3 TLSWRNISFTTGKG------------------------------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKA 52 (202)
T ss_pred eEEEEccEEEeccC------------------------------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHH
Confidence 47899999998641 133569999999999999999999999999999999
Q ss_pred HhcCCC---CCCCceeEEEEcCccCCCCC--ccceEEEecCCCCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHh
Q 000913 198 LAGKLD---PTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272 (1226)
Q Consensus 198 L~G~~~---~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~ 272 (1226)
|+|.++ |+ +|+|.++|+++.... .++.++|++|++.+++.+||+||+.++.+..
T Consensus 53 l~G~~~~~~~~---~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------------------ 111 (202)
T cd03233 53 LANRTEGNVSV---EGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------ 111 (202)
T ss_pred hcccCCCCCCc---ceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc------------------
Confidence 999998 66 999999999876432 2467999999999999999999998754210
Q ss_pred cCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHhhHHHHHHHHhcCCccceeecCCC
Q 000913 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIST 352 (1226)
Q Consensus 273 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEpts 352 (1226)
.+..+..||||||||++||++|+.+|+++||||||+
T Consensus 112 --------------------------------------------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~ 147 (202)
T cd03233 112 --------------------------------------------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTR 147 (202)
T ss_pred --------------------------------------------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCc
Confidence 112334699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEEEec
Q 000913 353 GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407 (1226)
Q Consensus 353 gLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G 407 (1226)
|||+.++..+.+.|+++....+.++|+++||+..++.+.+|++++|++|++++.|
T Consensus 148 ~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 148 GLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999865335677887888888999999999999999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=342.21 Aligned_cols=213 Identities=21% Similarity=0.244 Sum_probs=175.5
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-------cceEEEecCCC--
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHD-- 235 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d-- 235 (1226)
..+|+||||+|++||+++|+|+||||||||+++|+|.++|+...+|+|.++|.++..... ++.++||+|++
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 459999999999999999999999999999999999998742238999999998865432 14799999987
Q ss_pred CCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccc
Q 000913 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1226)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1226)
.+.+.+||.+++.+......... ..+....+..+|+.+||++..+.
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~~~---------------------------------~~~~~~~~~~~L~~vgL~~~~~~- 154 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKGMS---------------------------------KAEAFEESVRMLDAVKMPEARKR- 154 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCC---------------------------------HHHHHHHHHHHHHHcCCCChHHH-
Confidence 68899999999987653321000 00112345667889999754332
Q ss_pred ccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcE
Q 000913 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1226)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1226)
+ ++.+.+|||||||||+||+||+.+|++||+||||+|||..++.+|++.|+++.+. .+++++.++|+...+.+++|+|
T Consensus 155 ~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~~Dri 232 (330)
T PRK09473 155 M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE-FNTAIIMITHDLGVVAGICDKV 232 (330)
T ss_pred h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEECCHHHHHHhCCEE
Confidence 2 3567789999999999999999999999999999999999999999999998653 3556677889999999999999
Q ss_pred EEEcCCeEEEecChhHHH
Q 000913 396 ILLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1226)
++|++|+|++.|+.+++.
T Consensus 233 ~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 233 LVMYAGRTMEYGNARDVF 250 (330)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999999875
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=385.24 Aligned_cols=256 Identities=22% Similarity=0.337 Sum_probs=191.8
Q ss_pred hHhhHHHHHHhhhccccChHHHHHHHHHHhhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhh
Q 000913 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1226)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1226)
.++.....+|+.+.++.+++. .+. .....+.....|+|+||++.++.
T Consensus 444 ~~~~~~a~~ri~~~l~~~~~~-----~~~-~~~~~~~~~~~I~~~nVsf~Y~~--------------------------- 490 (711)
T TIGR00958 444 MMQAVGASEKVFEYLDRKPNI-----PLT-GTLAPLNLEGLIEFQDVSFSYPN--------------------------- 490 (711)
T ss_pred HHHHHHHHHHHHHHhCCCCCC-----CCC-CCCCCCCCCCeEEEEEEEEECCC---------------------------
Confidence 567778888888887765441 000 00000112346999999999842
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCC
Q 000913 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1226)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1226)
+ +++++|+|+|++|+|||.++|+||||||||||+++|+|+++|+ +|+|++||+++++... ++.++||+|+
T Consensus 491 ---~-~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 563 (711)
T TIGR00958 491 ---R-PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQE 563 (711)
T ss_pred ---C-CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecC
Confidence 1 1235999999999999999999999999999999999999998 9999999999877654 4789999997
Q ss_pred CCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 000913 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1226)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1226)
+.+| +.||||||.++..- ...+.+.++++.. ++ +..+ -.|++..||
T Consensus 564 ~~lF-~gTIreNI~~g~~~----~~~e~i~~al~~a---~l------------------------~~~i--~~lp~GldT 609 (711)
T TIGR00958 564 PVLF-SGSVRENIAYGLTD----TPDEEIMAAAKAA---NA------------------------HDFI--MEFPNGYDT 609 (711)
T ss_pred cccc-ccCHHHHHhcCCCC----CCHHHHHHHHHHc---CC------------------------HHHH--HhCCCccCC
Confidence 7555 57999999986421 1112222222111 10 1111 236778899
Q ss_pred cccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCc
Q 000913 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1226)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1226)
.+|+.+. .||||||||++||||++++|+|++||||||+||+.++..|.+ ... ..++|+|+ ++|.. ++.+.+|+
T Consensus 610 ~ige~G~-~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~---~~~~TvIi-ItHrl-~~i~~aD~ 682 (711)
T TIGR00958 610 EVGEKGS-QLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRS---RASRTVLL-IAHRL-STVERADQ 682 (711)
T ss_pred cccCCCC-cCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhc---cCCCeEEE-EeccH-HHHHhCCE
Confidence 9998654 699999999999999999999999999999999999999988 221 23455555 55543 56788999
Q ss_pred EEEEcCCeEEEecChhHHHH
Q 000913 395 IILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1226)
|++|++|+|+++|+++++.+
T Consensus 683 IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 683 ILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred EEEEECCEEEEeeCHHHHHh
Confidence 99999999999999999864
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=329.52 Aligned_cols=204 Identities=20% Similarity=0.343 Sum_probs=170.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC-----ccceEEEecCCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-----PQRTAAYISQHDNHIGE 240 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~-----~~~~~~yv~Q~d~~~~~ 240 (1226)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.
T Consensus 15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (240)
T PRK09493 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPH 91 (240)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCCC
Confidence 4999999999999999999999999999999999999988 999999999875421 13579999999888899
Q ss_pred CCHHHHHHHHhH-hcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 000913 241 MTVRETLAFSAR-CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1226)
Q Consensus 241 lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1226)
+||+||+.|+.. ..+... .+....++++++.+||+...+..+
T Consensus 92 ~tv~~~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~--- 134 (240)
T PRK09493 92 LTALENVMFGPLRVRGASK----------------------------------EEAEKQARELLAKVGLAERAHHYP--- 134 (240)
T ss_pred CcHHHHHHhHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChHHHhcCh---
Confidence 999999988642 111000 001123567888999987666544
Q ss_pred ccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEc
Q 000913 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1226)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1226)
+.|||||||||+||++++.+|++++|||||+|||..+...+.+.|+++.. .+ ++||.++|+..++.+++|++++|+
T Consensus 135 --~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~-~tiii~sH~~~~~~~~~d~i~~l~ 210 (240)
T PRK09493 135 --SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EG-MTMVIVTHEIGFAEKVASRLIFID 210 (240)
T ss_pred --hhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhCCEEEEEE
Confidence 56999999999999999999999999999999999999999999998754 34 455567788889999999999999
Q ss_pred CCeEEEecChhHHH
Q 000913 400 DGQIVYQGPRELVL 413 (1226)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1226)
+|++++.|+.+++.
T Consensus 211 ~G~i~~~g~~~~~~ 224 (240)
T PRK09493 211 KGRIAEDGDPQVLI 224 (240)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999988764
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=337.43 Aligned_cols=213 Identities=25% Similarity=0.372 Sum_probs=178.2
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++ ++.+|+|+|+++++|++++|+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcc
Confidence 56788887763 2358999999999999999999999999999999999876 56899999998753
Q ss_pred h-----hhhcceeeEeecCCCC-CCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 000913 936 Q-----ETFARISGYCEQNDIH-SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1226)
Q Consensus 936 ~-----~~~~~~~gyv~Q~~~~-~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LS 1009 (1226)
. ...++.++|++|++.. ....|+.||+.+....+ ....++..+.++++++.+++.+..++. +..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCC
Confidence 1 2345679999999753 34568999998764332 123344456688999999998877765 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 000913 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1226)
Q Consensus 1010 gGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y 1089 (1226)
||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 216 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILT 216 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 47788999999986 78999
Q ss_pred eCCC
Q 000913 1090 VGPL 1093 (1226)
Q Consensus 1090 ~G~~ 1093 (1226)
.|+.
T Consensus 217 ~g~~ 220 (271)
T PRK13638 217 HGAP 220 (271)
T ss_pred eCCH
Confidence 9874
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=336.43 Aligned_cols=215 Identities=27% Similarity=0.400 Sum_probs=174.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCC-CCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHD-NHIGEM 241 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~l 241 (1226)
++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|+++|+++..... ++.++|++|++ ..++.+
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~ 97 (279)
T PRK13635 21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGA 97 (279)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccc
Confidence 4999999999999999999999999999999999999998 9999999998765432 35799999986 367788
Q ss_pred CHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 000913 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1226)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1226)
||+|||.|+....+... .+....++++++.+||++..++.+
T Consensus 98 tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~----- 138 (279)
T PRK13635 98 TVQDDVAFGLENIGVPR----------------------------------EEMVERVDQALRQVGMEDFLNREP----- 138 (279)
T ss_pred cHHHHHhhhHhhCCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCc-----
Confidence 99999998754321100 011224577888999987776654
Q ss_pred CCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCC
Q 000913 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1226)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1226)
..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++.... +++|+.++|+..++. .+|+|++|++|
T Consensus 139 ~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~-~~tilivsH~~~~~~-~~d~i~~l~~G 216 (279)
T PRK13635 139 HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQK-GITVLSITHDLDEAA-QADRVIVMNKG 216 (279)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcC-CCEEEEEecCHHHHH-cCCEEEEEECC
Confidence 4699999999999999999999999999999999999999999999886532 444555667777775 59999999999
Q ss_pred eEEEecChhHHHH---HHHhcCCCCC
Q 000913 402 QIVYQGPRELVLE---FFASMGFRCP 424 (1226)
Q Consensus 402 ~iv~~G~~~~~~~---~F~~~Gf~cp 424 (1226)
++++.|+.+++.. .+...|+.+|
T Consensus 217 ~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13635 217 EILEEGTPEEIFKSGHMLQEIGLDVP 242 (279)
T ss_pred EEEEECCHHHHhcCHHHHHHcCCCCC
Confidence 9999999987753 3444455443
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=307.42 Aligned_cols=216 Identities=27% Similarity=0.386 Sum_probs=183.5
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
|+.+|++|++. .+.+|++||++++|||++||+|||||||||||++|+|... +..|++.++|.+.+
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChh
Confidence 46688998874 4679999999999999999999999999999999999876 45899999999875
Q ss_pred h---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 000913 936 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1012 (1226)
Q Consensus 936 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGq 1012 (1226)
. ....+.-+.+||+..+....||+|-+.++..-.... -...+..+.++++|+..++.++..+.. ..|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g-~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSG-REPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccccC-CCchhhHHHHHHHHHHcChhhhhccch-----hhcCchH
Confidence 4 345677799999998877789999999975332111 112244456789999999999887763 5799999
Q ss_pred HHHHHHHHHHhhC------CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 000913 1013 RKRLTIAVELVAN------PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1226)
Q Consensus 1013 rqrl~ia~~L~~~------p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~ 1086 (1226)
||||.+||.|+.- +++||||||||.||...+..++++.|+++++|..|+|+-||.+. ...++|||++|++ |+
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~-Gr 218 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQ-GR 218 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeC-Ce
Confidence 9999999999753 45899999999999999999999999999999999999999986 7789999999986 79
Q ss_pred EEEeCCCC
Q 000913 1087 EIYVGPLG 1094 (1226)
Q Consensus 1087 ~~y~G~~~ 1094 (1226)
++..|++.
T Consensus 219 v~a~g~p~ 226 (259)
T COG4559 219 VIASGSPQ 226 (259)
T ss_pred EeecCCHH
Confidence 99999863
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=405.64 Aligned_cols=263 Identities=21% Similarity=0.287 Sum_probs=200.7
Q ss_pred hHhhHHHHHHhhhccccChHHHHHHHHHHhhhcCCC-----CCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHH
Q 000913 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGID-----LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDIL 152 (1226)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 152 (1226)
.+.+++..+|+.++++..++ +..+ +.-+.+ ....+|+|+||+|.|+.
T Consensus 1126 ~~~a~~a~~ri~~ll~~~~~-----~~~~-~~~~~~~~~~~~~~g~I~f~nVsF~Y~~---------------------- 1177 (1466)
T PTZ00265 1126 SENAKLSFEKYYPLIIRKSN-----IDVR-DNGGIRIKNKNDIKGKIEIMDVNFRYIS---------------------- 1177 (1466)
T ss_pred HHHHHHHHHHHHHHHCCCCc-----CCCC-CCcccccccCCCCCceEEEEEEEEECCC----------------------
Confidence 56788888898888876543 1000 011111 12357999999999842
Q ss_pred hHhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC---------------------------
Q 000913 153 NYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--------------------------- 205 (1226)
Q Consensus 153 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--------------------------- 205 (1226)
+ ...+||+|+|++|+||+.+||+||||||||||+++|.|+++|+
T Consensus 1178 --------~-~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 (1466)
T PTZ00265 1178 --------R-PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQ 1248 (1466)
T ss_pred --------C-CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccc
Confidence 1 1235999999999999999999999999999999999999982
Q ss_pred ------------------------CCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCCCHHHHHHHHhHhcCCCc
Q 000913 206 ------------------------LKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGT 258 (1226)
Q Consensus 206 ------------------------~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~ 258 (1226)
...+|+|++||+++.++.. ++.++||+|++.+| +.||+|||.|+.. ..
T Consensus 1249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIreNI~~g~~----~a 1323 (1466)
T PTZ00265 1249 NVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIYENIKFGKE----DA 1323 (1466)
T ss_pred ccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHHHHHhcCCC----CC
Confidence 0138999999999987764 57899999987655 6899999999742 22
Q ss_pred hhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHhhHHHHHHHH
Q 000913 259 RYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338 (1226)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al 338 (1226)
..+.+.++++.... +.. +..|++.+||.||+.+. .||||||||++|||||
T Consensus 1324 t~eeI~~A~k~A~l---------------------------~~f--I~~LP~GydT~VGe~G~-~LSGGQkQRIaIARAL 1373 (1466)
T PTZ00265 1324 TREDVKRACKFAAI---------------------------DEF--IESLPNKYDTNVGPYGK-SLSGGQKQRIAIARAL 1373 (1466)
T ss_pred CHHHHHHHHHHcCC---------------------------HHH--HHhCccccCCccCCCCC-cCCHHHHHHHHHHHHH
Confidence 33333333332211 111 33689999999998765 5999999999999999
Q ss_pred hcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcC----CeEE-EecChhHHH
Q 000913 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD----GQIV-YQGPRELVL 413 (1226)
Q Consensus 339 ~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~----G~iv-~~G~~~~~~ 413 (1226)
+++|+||+||||||+||+.++..|.+.|+++....++|+|+ +.|. .++.+.||+|++|++ |+++ ++|++++++
T Consensus 1374 lr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIi-IaHR-lsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1374 LREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIIT-IAHR-IASIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEE-Eech-HHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 99999999999999999999999999998864223556655 4443 477888999999999 9955 899999986
Q ss_pred H
Q 000913 414 E 414 (1226)
Q Consensus 414 ~ 414 (1226)
+
T Consensus 1452 ~ 1452 (1466)
T PTZ00265 1452 S 1452 (1466)
T ss_pred h
Confidence 3
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=330.92 Aligned_cols=204 Identities=25% Similarity=0.386 Sum_probs=169.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCC-----------CccceEEEecCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-----------VPQRTAAYISQH 234 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~-----------~~~~~~~yv~Q~ 234 (1226)
++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++||+|+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~ 93 (250)
T PRK11264 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQN 93 (250)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEecC
Confidence 4999999999999999999999999999999999999988 99999999887532 123579999999
Q ss_pred CCCCCCCCHHHHHHHHhHh-cCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccc
Q 000913 235 DNHIGEMTVRETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (1226)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1226)
+.+++.+||+||+.++... ++. .. .+....++.+++.+||+...|
T Consensus 94 ~~~~~~~tv~e~l~~~~~~~~~~-~~---------------------------------~~~~~~~~~~l~~~gl~~~~~ 139 (250)
T PRK11264 94 FNLFPHRTVLENIIEGPVIVKGE-PK---------------------------------EEATARARELLAKVGLAGKET 139 (250)
T ss_pred cccCCCCCHHHHHHHHHHHhcCC-CH---------------------------------HHHHHHHHHHHHHcCCcchhh
Confidence 8889899999999885421 110 00 001123566788899987666
Q ss_pred ccccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcC
Q 000913 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (1226)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 393 (1226)
+. ++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.. .+ .+||.++|+..++.+++|
T Consensus 140 ~~-----~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tvi~~tH~~~~~~~~~d 212 (250)
T PRK11264 140 SY-----PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EK-RTMVIVTHEMSFARDVAD 212 (250)
T ss_pred CC-----hhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cC-CEEEEEeCCHHHHHHhcC
Confidence 54 456999999999999999999999999999999999999999999998764 34 445557888889999999
Q ss_pred cEEEEcCCeEEEecChhHHH
Q 000913 394 DIILLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 394 ~iilL~~G~iv~~G~~~~~~ 413 (1226)
+|++|++|++++.|+.+++.
T Consensus 213 ~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 213 RAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988763
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=335.59 Aligned_cols=218 Identities=21% Similarity=0.274 Sum_probs=181.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.+.++|+++.++ ++.+|+|+|+++++|++++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 71 (265)
T PRK10253 7 RLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHI 71 (265)
T ss_pred EEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEh
Confidence 578899998874 2469999999999999999999999999999999999876 4689999999875
Q ss_pred Ch---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 000913 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1226)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSg 1010 (1226)
.. ..+++.++|++|++.+++..|++|++.+....... .....+..++.++++++.++|.+..++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 146 (265)
T PRK10253 72 QHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----VDTLSG 146 (265)
T ss_pred hhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCCh
Confidence 32 23445799999999888889999999875211100 0001123345688999999998777765 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 000913 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1226)
Q Consensus 1011 Gqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y 1089 (1226)
|||||++||+||+.+|++|+|||||+|||+.++..+++.|+++.++ |.|||+++|++. ++.+.+|++++|++ |++++
T Consensus 147 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~ 224 (265)
T PRK10253 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKIVA 224 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999764 899999999987 58899999999986 78999
Q ss_pred eCCCC
Q 000913 1090 VGPLG 1094 (1226)
Q Consensus 1090 ~G~~~ 1094 (1226)
.|+..
T Consensus 225 ~g~~~ 229 (265)
T PRK10253 225 QGAPK 229 (265)
T ss_pred eCCHH
Confidence 98753
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=335.22 Aligned_cols=217 Identities=27% Similarity=0.373 Sum_probs=180.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++ ++.+|+|+||++++|++++|+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEeh
Confidence 488899988763 2469999999999999999999999999999999999876 4689999999765
Q ss_pred C---hhhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 000913 935 K---QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1226)
Q Consensus 935 ~---~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSg 1010 (1226)
. ...+++.++|++|+..+++.+|+.||+.+....... ........++.++++++.+++.+..+..+ ..|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCH
Confidence 3 223456799999998888889999999875321110 00111233456889999999987777664 46999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 000913 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1226)
Q Consensus 1011 Gqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y 1089 (1226)
||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~ 228 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIA 228 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999998764 899999999987 57789999999986 78898
Q ss_pred eCCC
Q 000913 1090 VGPL 1093 (1226)
Q Consensus 1090 ~G~~ 1093 (1226)
.|+.
T Consensus 229 ~~~~ 232 (265)
T PRK10575 229 QGTP 232 (265)
T ss_pred ecCH
Confidence 8875
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=327.38 Aligned_cols=203 Identities=34% Similarity=0.544 Sum_probs=164.4
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC---CCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCC
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD---PTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEM 241 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~---~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (1226)
+++|+|+|+++++||+++|+||||||||||+++|+|.++ |+ +|+|.++|+++.....++.++|++|++.+++.+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPGL 96 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcCC
Confidence 559999999999999999999999999999999999998 76 999999998875433457899999999999999
Q ss_pred CHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHH-HHHHcCCcccccccccccc
Q 000913 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDY-YLKVLGLDVCADTMVGDEM 320 (1226)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~l~~lgL~~~~dt~vg~~~ 320 (1226)
||+||+.|+.......... ... .....+. .++.+++++..++.
T Consensus 97 tv~enl~~~~~~~~~~~~~---~~~----------------------------~~~~~~~~~l~~~~l~~~~~~~----- 140 (226)
T cd03234 97 TVRETLTYTAILRLPRKSS---DAI----------------------------RKKRVEDVLLRDLALTRIGGNL----- 140 (226)
T ss_pred cHHHHHHHHHHhhcccccc---hHH----------------------------HHHHHHHHHHHhhcchhhhccc-----
Confidence 9999999876433211000 000 0011233 67788887655544
Q ss_pred cCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcC
Q 000913 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1226)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1226)
++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++.|++..++.+++|++++|++
T Consensus 141 ~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~ 219 (226)
T cd03234 141 VKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSS 219 (226)
T ss_pred ccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeC
Confidence 456999999999999999999999999999999999999999999998754 3556666544444689999999999999
Q ss_pred CeEEEec
Q 000913 401 GQIVYQG 407 (1226)
Q Consensus 401 G~iv~~G 407 (1226)
|+++++|
T Consensus 220 G~i~~~g 226 (226)
T cd03234 220 GEIVYSG 226 (226)
T ss_pred CEEEecC
Confidence 9999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=330.64 Aligned_cols=219 Identities=21% Similarity=0.284 Sum_probs=176.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCC---CCceEEEEEEEcC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGNITISG 931 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~---~~~~~~G~i~i~g 931 (1226)
.++++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|.. ++.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 467888887763 246999999999999999999999999999999999962 2112479999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 000913 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1226)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 1006 (1226)
.++.. ..+++.++|++|++.+++ .|++||+.+....+.. ...+..++.++++++.+++.+........ .+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 145 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGV--KDNAFIRQRVEETLKGAALWDEVKDKLKE-SAF 145 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCcchhhhhhC-Ccc
Confidence 87642 234567999999988776 6999999886543311 12233445688999999986432111111 145
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 000913 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1226)
Q Consensus 1007 ~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~ 1086 (1226)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||+++|+++ ++.+.+|++++|++ |+
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~ 222 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CE
Confidence 799999999999999999999999999999999999999999999985 5899999999987 47789999999986 78
Q ss_pred EEEeCCC
Q 000913 1087 EIYVGPL 1093 (1226)
Q Consensus 1087 ~~y~G~~ 1093 (1226)
+++.|+.
T Consensus 223 ~~~~~~~ 229 (250)
T PRK14245 223 MVEYDDT 229 (250)
T ss_pred EEEECCH
Confidence 9999974
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=331.52 Aligned_cols=220 Identities=23% Similarity=0.307 Sum_probs=177.2
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCC---CceEEEEEEEc
Q 000913 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGNITIS 930 (1226)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~---~~~~~G~i~i~ 930 (1226)
..++++|+++.++ ++.+|+|+|+++++||+++|+|+|||||||||++|+|... ..+.+|+|.++
T Consensus 5 ~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 71 (253)
T PRK14242 5 PKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLD 71 (253)
T ss_pred cEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEEC
Confidence 3588999998874 2359999999999999999999999999999999999742 11358999999
Q ss_pred CccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 000913 931 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 1005 (1226)
Q Consensus 931 g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~ 1005 (1226)
|.++.. ..+++.++|++|++.+++ .||+||+.+....+.. ...+..++.++++++.+++.+........ .+
T Consensus 72 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~ 147 (253)
T PRK14242 72 GENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGV--KDKAYLAERVERSLRHAALWDEVKDRLHE-SA 147 (253)
T ss_pred CEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCchhhhHHhhC-Cc
Confidence 987632 234567999999988877 5999999987543311 12233456688899999985422111111 14
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 000913 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1226)
Q Consensus 1006 ~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg 1085 (1226)
..|||||||||+||++|+.+|+||+|||||+|||+.++..+++.|+++. +|+|||+++|+++ ++.+.+|++++|++ |
T Consensus 148 ~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~-~~~~~~d~v~~l~~-G 224 (253)
T PRK14242 148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQ-QAARVSDVTAFFYM-G 224 (253)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHH-HHHHhCCEEEEEEC-C
Confidence 6799999999999999999999999999999999999999999999985 4799999999986 47788999999986 6
Q ss_pred EEEEeCCC
Q 000913 1086 QEIYVGPL 1093 (1226)
Q Consensus 1086 ~~~y~G~~ 1093 (1226)
+++..|+.
T Consensus 225 ~i~~~g~~ 232 (253)
T PRK14242 225 KLIEVGPT 232 (253)
T ss_pred EEEEeCCH
Confidence 88888864
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=350.40 Aligned_cols=202 Identities=24% Similarity=0.300 Sum_probs=175.4
Q ss_pred ceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh---hh----hcceeeEeecCCCC
Q 000913 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ET----FARISGYCEQNDIH 952 (1226)
Q Consensus 880 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~----~~~~~gyv~Q~~~~ 952 (1226)
...+|+|+||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.. .. .++.+|||+|++.+
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 3468999999999999999999999999999999999876 568999999987642 11 23569999999999
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000913 953 SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1032 (1226)
Q Consensus 953 ~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LD 1032 (1226)
++.+||+||+.|....+. ...++.++++.++++.++|.+..++.+ ..|||||||||+|||||+.+|+|||||
T Consensus 118 ~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLD 189 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLMD 189 (400)
T ss_pred CCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 999999999998765432 234455567889999999998877763 579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 000913 1033 EPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1033 EPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
|||+|||+.++..+++.|+++.+ .|+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~ 249 (400)
T PRK10070 190 EAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTP 249 (400)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCH
Confidence 99999999999999999999875 5899999999987 57889999999986 689998874
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=348.69 Aligned_cols=206 Identities=24% Similarity=0.337 Sum_probs=175.2
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-------cceEEEecCCCCC
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1226)
..+|+|+||.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|+..+
T Consensus 41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 45899999999999999999999999999999999999998 9999999998765432 2479999999999
Q ss_pred CCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 000913 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1226)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1226)
++.+||+||+.|+....+... .+....++++++.+||++..+..+
T Consensus 118 ~~~~Tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~e~L~~~gL~~~~~~~~- 162 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAGINA----------------------------------EERREKALDALRQVGLENYAHSYP- 162 (400)
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhcCc-
Confidence 999999999999765432110 001123567889999987666544
Q ss_pred ccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEE
Q 000913 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1226)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iil 397 (1226)
+.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++....+ ++||.++|+..++.+++|+|++
T Consensus 163 ----~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g-~TIIivTHd~~~~~~~~Dri~v 237 (400)
T PRK10070 163 ----DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQ-RTIVFISHDLDEAMRIGDRIAI 237 (400)
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCC-CeEEEEECCHHHHHHhCCEEEE
Confidence 56999999999999999999999999999999999999999999998765334 4555578888999999999999
Q ss_pred EcCCeEEEecChhHHH
Q 000913 398 LSDGQIVYQGPRELVL 413 (1226)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1226)
|++|++++.|+++++.
T Consensus 238 L~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 238 MQNGEVVQVGTPDEIL 253 (400)
T ss_pred EECCEEEecCCHHHHH
Confidence 9999999999988764
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=332.33 Aligned_cols=217 Identities=19% Similarity=0.247 Sum_probs=179.3
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCc---eEEEEEEEcC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1226)
.++++|+++.++ .+.+|+|+|+++++||++||+|||||||||||++|+|...+. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 377889988874 246999999999999999999999999999999999986532 2589999999
Q ss_pred ccCC-----hhhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCC
Q 000913 932 YPKK-----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1226)
Q Consensus 932 ~~~~-----~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 1002 (1226)
.++. ...+++.++|++|++.+++.+||+||+.+....+. ....++.++.++++++.+++.+ ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP--- 145 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 8753 12345679999999988999999999988654332 1123444567888999999842 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 000913 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1226)
Q Consensus 1003 ~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~ 1082 (1226)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~ 221 (258)
T PRK14241 146 --GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFN 221 (258)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 467999999999999999999999999999999999999999999999864 699999999986 4778999999997
Q ss_pred c-----CcEEEEeCCC
Q 000913 1083 R-----GGQEIYVGPL 1093 (1226)
Q Consensus 1083 ~-----Gg~~~y~G~~ 1093 (1226)
+ .|++++.|+.
T Consensus 222 ~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 222 LEATGKPGRLVEIDDT 237 (258)
T ss_pred cccCCCCceEEecCCH
Confidence 2 4799999874
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=335.98 Aligned_cols=214 Identities=28% Similarity=0.356 Sum_probs=179.5
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++ +++.+|+|||+++++||++||+||||||||||+++|+|... +..|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECc
Confidence 56788888763 12358999999999999999999999999999999999876 45899999998763
Q ss_pred h-----hhhcceeeEeecCCC-CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 000913 936 Q-----ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1226)
Q Consensus 936 ~-----~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LS 1009 (1226)
. ...++.++|++|++. .+...||.|++.+..... ....++..+.+.++++.++|.++.++.+ ..||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCC
Confidence 1 124567999999963 333479999998764321 2334455567889999999988887764 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 000913 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1226)
Q Consensus 1010 gGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y 1089 (1226)
||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|++. ++.+.||++++|++ |++++
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIK 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 47788999999986 78999
Q ss_pred eCCC
Q 000913 1090 VGPL 1093 (1226)
Q Consensus 1090 ~G~~ 1093 (1226)
.|+.
T Consensus 218 ~g~~ 221 (275)
T PRK13639 218 EGTP 221 (275)
T ss_pred eCCH
Confidence 9875
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=324.12 Aligned_cols=196 Identities=30% Similarity=0.452 Sum_probs=165.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC--ccceEEEecCCCCCCCCCCH
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTV 243 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1226)
++|+|+|+.+++| +++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||
T Consensus 14 ~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (211)
T cd03264 14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTV 89 (211)
T ss_pred EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCCH
Confidence 4999999999999 99999999999999999999999998 999999998875432 24679999999989999999
Q ss_pred HHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCC
Q 000913 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1226)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 323 (1226)
+||+.+.....+... .+....++.+++.+||++..++.+ ..
T Consensus 90 ~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (211)
T cd03264 90 REFLDYIAWLKGIPS----------------------------------KEVKARVDEVLELVNLGDRAKKKI-----GS 130 (211)
T ss_pred HHHHHHHHHHhCCCH----------------------------------HHHHHHHHHHHHHCCCHHHHhCch-----hh
Confidence 999998654322100 001123566788999987777655 46
Q ss_pred CChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeE
Q 000913 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1226)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~i 403 (1226)
|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.. + ++|+.++|+..++.+++|++++|++|++
T Consensus 131 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d~i~~l~~g~i 207 (211)
T cd03264 131 LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--D-RIVILSTHIVEDVESLCNQVAVLNKGKL 207 (211)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--C-CEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998753 3 5566678888889999999999999999
Q ss_pred EEec
Q 000913 404 VYQG 407 (1226)
Q Consensus 404 v~~G 407 (1226)
++.|
T Consensus 208 ~~~g 211 (211)
T cd03264 208 VFEG 211 (211)
T ss_pred EecC
Confidence 8765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=334.02 Aligned_cols=223 Identities=23% Similarity=0.296 Sum_probs=179.9
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
+.++|+++.++...... ..+++.+|+|+|+++++||++||+|+|||||||||++|+|... +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 67888888874210000 0113579999999999999999999999999999999999876 56899999998754
Q ss_pred hh------hhcceeeEeecCC--CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 000913 936 QE------TFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 1006 (1226)
Q Consensus 936 ~~------~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~ 1006 (1226)
.. .+++.++|++|++ .+.+.+||+|++.+..... ........++.+.++++.+++. ...+.. +.
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKL-----PR 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCC-----hh
Confidence 21 1356799999996 4667899999998754321 1122334456788999999996 556655 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 000913 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1226)
Q Consensus 1007 ~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg 1085 (1226)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|++. .+.+.+|++++|++ |
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G 227 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDK-G 227 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeC-C
Confidence 79999999999999999999999999999999999999999999998764 899999999987 47778999999985 7
Q ss_pred EEEEeCCC
Q 000913 1086 QEIYVGPL 1093 (1226)
Q Consensus 1086 ~~~y~G~~ 1093 (1226)
++++.|+.
T Consensus 228 ~i~~~g~~ 235 (265)
T TIGR02769 228 QIVEECDV 235 (265)
T ss_pred EEEEECCH
Confidence 99999875
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=337.37 Aligned_cols=217 Identities=24% Similarity=0.327 Sum_probs=177.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++... ...+.+|+|||+++++|++++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~--------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~ 72 (280)
T PRK13649 3 INLQNVSYTYQAGT--------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLIT 72 (280)
T ss_pred EEEEEEEEEcCCCC--------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 67888988874210 001358999999999999999999999999999999999876 46899999998753
Q ss_pred h-------hhhcceeeEeecCC--CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCC
Q 000913 936 Q-------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGV 1005 (1226)
Q Consensus 936 ~-------~~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~ 1005 (1226)
. ..+++.++|++|++ .+++ .||+||+.|..... ..+.++.++.++++++.++|.+ ..+.. +
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 143 (280)
T PRK13649 73 STSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKN-----P 143 (280)
T ss_pred ccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----c
Confidence 2 23456799999996 3444 69999998864332 1233444566888999999973 45554 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 000913 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1226)
Q Consensus 1006 ~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg 1085 (1226)
..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++ |
T Consensus 144 ~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G 221 (280)
T PRK13649 144 FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK-G 221 (280)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999877999999999986 47788999999986 7
Q ss_pred EEEEeCCC
Q 000913 1086 QEIYVGPL 1093 (1226)
Q Consensus 1086 ~~~y~G~~ 1093 (1226)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (280)
T PRK13649 222 KLVLSGKP 229 (280)
T ss_pred EEEEeCCH
Confidence 88888874
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=323.94 Aligned_cols=191 Identities=27% Similarity=0.369 Sum_probs=160.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCC-CCCCCCHH
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDN-HIGEMTVR 244 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~-~~~~lTV~ 244 (1226)
++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++|++|++. .++.+||+
T Consensus 14 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred ceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 4999999999999999999999999999999999999998 9999999988754333467999999863 35578999
Q ss_pred HHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 000913 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1226)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1226)
||+.++....+. ....++.+++.+||++..++.+ ..|
T Consensus 91 e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~L 127 (205)
T cd03226 91 EELLLGLKELDA--------------------------------------GNEQAETVLKDLDLYALKERHP-----LSL 127 (205)
T ss_pred HHHhhhhhhcCc--------------------------------------cHHHHHHHHHHcCCchhcCCCc-----hhC
Confidence 999876432100 0013456788999987766554 469
Q ss_pred ChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEE
Q 000913 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1226)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1226)
||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+ .+|+.++|+..++.+++|++++|++|+++
T Consensus 128 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 128 SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QG-KAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999999999999999999998764 34 44555778888899999999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=326.06 Aligned_cols=213 Identities=25% Similarity=0.361 Sum_probs=176.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++... ....+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~~---------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQGE---------HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCCC---------cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEc
Confidence 478999988774210 01359999999999999999999999999999999999876 5689999999875
Q ss_pred Chh---h---h-cceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 000913 935 KQE---T---F-ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 1007 (1226)
Q Consensus 935 ~~~---~---~-~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~ 1007 (1226)
... . . ++.++|++|++.+++.+|+.||+.+....+. ....+.++++.++++.+++.+..+..+ ..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG---ESSRQSRNGAKALLEQLGLGKRLDHLP-----AQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 421 1 1 2569999999988888999999988654321 233444567889999999987776653 57
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 000913 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1226)
Q Consensus 1008 LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~ 1086 (1226)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|+++. + +.+|++++|++ |+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l~~-g~ 223 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL-A-ARCDRRLRLVN-GQ 223 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998754 8999999999873 4 56999999986 56
Q ss_pred EEE
Q 000913 1087 EIY 1089 (1226)
Q Consensus 1087 ~~y 1089 (1226)
++.
T Consensus 224 i~~ 226 (228)
T PRK10584 224 LQE 226 (228)
T ss_pred EEe
Confidence 653
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=332.46 Aligned_cols=220 Identities=21% Similarity=0.258 Sum_probs=180.3
Q ss_pred CCCCceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCC--C-ceEEEE
Q 000913 850 PFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGN 926 (1226)
Q Consensus 850 ~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-~~~~G~ 926 (1226)
|.+...++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+
T Consensus 8 ~~~~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~ 74 (260)
T PRK10744 8 ATAPSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGE 74 (260)
T ss_pred cCCCceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceE
Confidence 33445689999998874 2359999999999999999999999999999999999854 1 135899
Q ss_pred EEEcCccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCc----ccc
Q 000913 927 ITISGYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQ 997 (1226)
Q Consensus 927 i~i~g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~ 997 (1226)
|.++|.++.. ..+++.++|++|++.+++ .||+||+.+...... ..+.++.+++++++++.+++.+ ..+
T Consensus 75 i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 151 (260)
T PRK10744 75 ILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLH 151 (260)
T ss_pred EEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHh
Confidence 9999987531 234567999999988777 899999988653221 1233444567889999999843 233
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCe
Q 000913 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1077 (1226)
Q Consensus 998 ~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~ 1077 (1226)
.. +..||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++. ++.|||+++|++. ++.+.+|+
T Consensus 152 ~~-----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~ 224 (260)
T PRK10744 152 QS-----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDY 224 (260)
T ss_pred cC-----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCE
Confidence 33 45799999999999999999999999999999999999999999999986 4789999999986 47788999
Q ss_pred EEEEecCcEEEEeCCC
Q 000913 1078 LFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1078 v~ll~~Gg~~~y~G~~ 1093 (1226)
+++|++ |+++..|+.
T Consensus 225 i~~l~~-G~i~~~g~~ 239 (260)
T PRK10744 225 TAFMYL-GELIEFGNT 239 (260)
T ss_pred EEEEEC-CEEEEeCCH
Confidence 999986 789998874
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=301.34 Aligned_cols=200 Identities=27% Similarity=0.407 Sum_probs=178.6
Q ss_pred EEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHH
Q 000913 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYES 961 (1226)
Q Consensus 882 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~ 961 (1226)
.+|+|||+++.+||.++++||||||||||||+++|..+ +..|.|.+||.+++..... -|.|+|++.++|.+||.||
T Consensus 19 ~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gPgae--rgvVFQ~~~LlPWl~~~dN 94 (259)
T COG4525 19 SALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAE--RGVVFQNEALLPWLNVIDN 94 (259)
T ss_pred hhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCCCcc--ceeEeccCccchhhHHHHH
Confidence 58999999999999999999999999999999999987 5689999999987654333 4899999999999999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000913 962 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041 (1226)
Q Consensus 962 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~ 1041 (1226)
+.|+..++. +++.++.+.+.+.+..+||.+..++.+ -.||||||||+.|||||+.+|++|+||||++.||+-
T Consensus 95 vafgL~l~G---i~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~ 166 (259)
T COG4525 95 VAFGLQLRG---IEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDAL 166 (259)
T ss_pred HHHHHHhcC---CCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHHH
Confidence 999988874 678899999999999999999988774 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEecC-cEEEEeCCCC
Q 000913 1042 AAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG-GQEIYVGPLG 1094 (1226)
Q Consensus 1042 ~~~~i~~~l~~~~-~~g~tvi~t~H~p~~~i~~~~D~v~ll~~G-g~~~y~G~~~ 1094 (1226)
+++.++++|-++. .+|+.++++||+.. +..-+++++++|+.| |+++..-|++
T Consensus 167 tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 167 TREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCC
Confidence 9999999999986 46999999999976 455567999999865 6777766653
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=333.25 Aligned_cols=216 Identities=28% Similarity=0.405 Sum_probs=179.0
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcc
Confidence 46778877763 2469999999999999999999999999999999999876 46899999998753
Q ss_pred h---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 000913 936 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1226)
Q Consensus 936 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgG 1011 (1226)
. ...++.++|++|++.+++.+||+||+.+....... ......+..+.+.++++.+++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHH
Confidence 2 23345689999998777889999999875311100 00111233456889999999987777663 569999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 000913 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1226)
Q Consensus 1012 qrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G 1091 (1226)
||||++||++|+.+|++++|||||+|||+.+...+++.|+++.++|.|||+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 219 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAG 219 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEec
Confidence 999999999999999999999999999999999999999999877899999999997 57789999999986 6889888
Q ss_pred CC
Q 000913 1092 PL 1093 (1226)
Q Consensus 1092 ~~ 1093 (1226)
+.
T Consensus 220 ~~ 221 (256)
T TIGR03873 220 PP 221 (256)
T ss_pred CH
Confidence 75
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=335.57 Aligned_cols=206 Identities=25% Similarity=0.346 Sum_probs=170.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCC--C---CccceEEEecCCCC-CCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE--F---VPQRTAAYISQHDN-HIG 239 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~--~---~~~~~~~yv~Q~d~-~~~ 239 (1226)
.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. . ..++.++|++|++. .+.
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 96 (283)
T PRK13636 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLF 96 (283)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhc
Confidence 4999999999999999999999999999999999999998 9999999998741 1 12357999999863 345
Q ss_pred CCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 000913 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1226)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1226)
..||+||+.++....+... .+....++.+++.+||.+..++.
T Consensus 97 ~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~---- 138 (283)
T PRK13636 97 SASVYQDVSFGAVNLKLPE----------------------------------DEVRKRVDNALKRTGIEHLKDKP---- 138 (283)
T ss_pred cccHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhhhhCC----
Confidence 6899999988653321100 00112456788999998766654
Q ss_pred ccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEc
Q 000913 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1226)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1226)
++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..+ ++|+.++|+..++..++|+|++|+
T Consensus 139 -~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g-~tillvsH~~~~~~~~~dri~~l~ 216 (283)
T PRK13636 139 -THCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELG-LTIIIATHDIDIVPLYCDNVFVMK 216 (283)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC-CEEEEEecCHHHHHHhCCEEEEEE
Confidence 456999999999999999999999999999999999999999999998865334 455557888889999999999999
Q ss_pred CCeEEEecChhHHHH
Q 000913 400 DGQIVYQGPRELVLE 414 (1226)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1226)
+|++++.|+.+++..
T Consensus 217 ~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 217 EGRVILQGNPKEVFA 231 (283)
T ss_pred CCEEEEeCCHHHHhc
Confidence 999999999988753
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=333.53 Aligned_cols=220 Identities=26% Similarity=0.343 Sum_probs=180.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCc-eEEEEEEEcCcc
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYP 933 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~ 933 (1226)
-++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 477888887763 246999999999999999999999999999999999986532 236999999986
Q ss_pred CCh--------hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcC-----CCCCHHHHHHHHHHHHHHcCCCccccccc
Q 000913 934 KKQ--------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-----PEVDSETRKMFIDEVMELVELNPLRQSLV 1000 (1226)
Q Consensus 934 ~~~--------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~-----~~~~~~~~~~~v~~~l~~l~l~~~~~~~~ 1000 (1226)
... ...++.++|++|++.+++.+||+||+.+......+ .....++.+.+++++++.+++.+..++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 532 22355689999999988999999999875321000 01112334567889999999987777653
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEE
Q 000913 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELF 1079 (1226)
Q Consensus 1001 g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~H~p~~~i~~~~D~v~ 1079 (1226)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++.+ +|+|||+++|++. .+.+.+|+++
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 56999999999999999999999999999999999999999999999975 4899999999986 4788999999
Q ss_pred EEecCcEEEEeCCCC
Q 000913 1080 LMKRGGQEIYVGPLG 1094 (1226)
Q Consensus 1080 ll~~Gg~~~y~G~~~ 1094 (1226)
+|.+ |++++.|+..
T Consensus 225 ~l~~-g~i~~~g~~~ 238 (262)
T PRK09984 225 ALRQ-GHVFYDGSSQ 238 (262)
T ss_pred EEEC-CEEEEeCCHH
Confidence 9986 6889988753
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=327.81 Aligned_cols=211 Identities=26% Similarity=0.318 Sum_probs=174.2
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++ ++.+|+|+||++++||+++|+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (230)
T TIGR03410 1 LEVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDIT 65 (230)
T ss_pred CEEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECC
Confidence 35677877663 2469999999999999999999999999999999999876 56899999998753
Q ss_pred hh----hhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcC-CCcccccccCCCCCCCCCH
Q 000913 936 QE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE-LNPLRQSLVGLPGVSGLST 1010 (1226)
Q Consensus 936 ~~----~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~-l~~~~~~~~g~~~~~~LSg 1010 (1226)
.. ..++.++|++|++.+++.+|++|++.+....+. .. ..+.++++++.++ +.+..+.. +..|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~ 134 (230)
T TIGR03410 66 KLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSG 134 (230)
T ss_pred CCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCH
Confidence 21 134569999999999999999999988654321 11 1233567777776 45555554 457999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 000913 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1226)
Q Consensus 1011 Gqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y 1089 (1226)
|||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|++. ++.+.+|++++|++ |+++.
T Consensus 135 G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~ 212 (230)
T TIGR03410 135 GQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVA 212 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 47778999999986 78999
Q ss_pred eCCCC
Q 000913 1090 VGPLG 1094 (1226)
Q Consensus 1090 ~G~~~ 1094 (1226)
.|+..
T Consensus 213 ~~~~~ 217 (230)
T TIGR03410 213 SGAGD 217 (230)
T ss_pred ECCHH
Confidence 88753
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=319.75 Aligned_cols=196 Identities=30% Similarity=0.581 Sum_probs=163.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCc-eEEEEEEEcCcc
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYP 933 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~ 933 (1226)
.++|+|++|.++.+. +++.+|+|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~~---------~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKGR---------SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccCC---------CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 578999999997531 3457999999999999999999999999999999999986532 568999999987
Q ss_pred CCh--hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 000913 934 KKQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1226)
Q Consensus 934 ~~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgG 1011 (1226)
... ...++.++|++|++.+++.+||+|++.+..... .+.. +..||+|
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 643 235567999999999999999999998753211 1222 3569999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 000913 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1226)
Q Consensus 1012 qrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~ 1090 (1226)
||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++ +.|+|+++|+...++.+.+|++++|++ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999999765 678777766643468889999999986 688776
Q ss_pred C
Q 000913 1091 G 1091 (1226)
Q Consensus 1091 G 1091 (1226)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 4
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=330.79 Aligned_cols=194 Identities=21% Similarity=0.294 Sum_probs=164.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCCCHHH
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1226)
.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .++.++|++|++.+++.+||+|
T Consensus 26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~e 100 (257)
T PRK11247 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVID 100 (257)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEecCccCCCCCcHHH
Confidence 4999999999999999999999999999999999999998 9999999987543 2467999999988888899999
Q ss_pred HHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 000913 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1226)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1226)
|+.++... . ....++.+++.+||.+..+.. +..||
T Consensus 101 nl~~~~~~----~------------------------------------~~~~~~~~l~~~gl~~~~~~~-----~~~LS 135 (257)
T PRK11247 101 NVGLGLKG----Q------------------------------------WRDAALQALAAVGLADRANEW-----PAALS 135 (257)
T ss_pred HHHhcccc----h------------------------------------HHHHHHHHHHHcCChhHhcCC-----hhhCC
Confidence 99875310 0 001245678889998766554 45699
Q ss_pred hhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEEE
Q 000913 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1226)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~ 405 (1226)
|||||||+||++|+.+|+++||||||+|||+.+...+.+.|+++.+..+ .+||.++|+..++.+++|+|++|++|++++
T Consensus 136 gGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~-~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 136 GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHG-FTVLLVTHDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999999998765334 445557888888999999999999999999
Q ss_pred ecChh
Q 000913 406 QGPRE 410 (1226)
Q Consensus 406 ~G~~~ 410 (1226)
+|+.+
T Consensus 215 ~~~~~ 219 (257)
T PRK11247 215 DLTVD 219 (257)
T ss_pred ecccc
Confidence 88754
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=344.88 Aligned_cols=208 Identities=25% Similarity=0.294 Sum_probs=175.6
Q ss_pred ccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCc----cCCCCCc-------cceEEEe
Q 000913 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH----DMDEFVP-------QRTAAYI 231 (1226)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~----~~~~~~~-------~~~~~yv 231 (1226)
....+|+|+||.|++||+++|+|||||||||||++|+|+++|+ +|+|+++|. ++..... ++.++||
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 4567999999999999999999999999999999999999998 999999996 3333221 2479999
Q ss_pred cCCCCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccc
Q 000913 232 SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311 (1226)
Q Consensus 232 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1226)
+|+..+++.+||+||+.|+....+... .+....++++++.+||++.
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~g~~~----------------------------------~~~~~~a~e~le~vgL~~~ 157 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQGMPE----------------------------------AERRKRVDEQLELVGLAQW 157 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchh
Confidence 999999999999999999865433210 0112245678999999877
Q ss_pred ccccccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhh
Q 000913 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (1226)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~ 391 (1226)
.|..+ ..|||||||||+|||+|+.+|+||||||||+|||+.++.++.+.|+++.... +.+|+.++|+..++.++
T Consensus 158 ~~~~~-----~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~-~~TII~iTHdl~e~~~l 231 (382)
T TIGR03415 158 ADKKP-----GELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKL-NKTIIFVSHDLDEALKI 231 (382)
T ss_pred hcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHh
Confidence 77655 4699999999999999999999999999999999999999999999876533 45555578889999999
Q ss_pred cCcEEEEcCCeEEEecChhHHH
Q 000913 392 FDDIILLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 392 ~D~iilL~~G~iv~~G~~~~~~ 413 (1226)
+|+|++|++|+++..|+++++.
T Consensus 232 ~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 232 GNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999998875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=329.46 Aligned_cols=200 Identities=26% Similarity=0.370 Sum_probs=166.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCCCHHH
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1226)
.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ...++|++|++.+++.+||+|
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~e 89 (255)
T PRK11248 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQD 89 (255)
T ss_pred eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHHH
Confidence 4999999999999999999999999999999999999998 99999999987542 345899999988889999999
Q ss_pred HHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 000913 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1226)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1226)
|+.++....+... .+....++.+++.+||++..++.+ ..||
T Consensus 90 ~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS 130 (255)
T PRK11248 90 NVAFGLQLAGVEK----------------------------------MQRLEIAHQMLKKVGLEGAEKRYI-----WQLS 130 (255)
T ss_pred HHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhhCCh-----hhCC
Confidence 9988653321100 001123567888999987666544 4699
Q ss_pred hhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEc--CCeE
Q 000913 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS--DGQI 403 (1226)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~--~G~i 403 (1226)
|||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++...+ ++||.++|+..++..++|+|++|+ +|++
T Consensus 131 gGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g-~tviivsH~~~~~~~~~d~i~~l~~~~G~i 209 (255)
T PRK11248 131 GGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETG-KQVLLITHDIEEAVFMATELVLLSPGPGRV 209 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEeCCCcEE
Confidence 9999999999999999999999999999999999999999998754334 445557888889999999999998 5999
Q ss_pred EEecChh
Q 000913 404 VYQGPRE 410 (1226)
Q Consensus 404 v~~G~~~ 410 (1226)
+..++.+
T Consensus 210 ~~~~~~~ 216 (255)
T PRK11248 210 VERLPLN 216 (255)
T ss_pred EEEecCC
Confidence 9988654
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=317.43 Aligned_cols=190 Identities=59% Similarity=0.947 Sum_probs=162.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++.+. .++.+|+|+|+++++|++++|+||||||||||+++|+|.....+.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~~~~---------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVKG---------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCCC---------CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 477899988875210 12469999999999999999999999999999999999743224689999999876
Q ss_pred ChhhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 000913 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1226)
Q Consensus 935 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrq 1014 (1226)
. ..+++.++|++|++.+++.+||+||+.+...++ .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR-------------------------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHHh-------------------------------------cCCHHHhH
Confidence 5 345567999999998889999999998753110 39999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 000913 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1226)
Q Consensus 1015 rl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G 1091 (1226)
|++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++.++.+.+|++++|+++|++++.|
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999887799999999998744678899999998657888875
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=339.81 Aligned_cols=225 Identities=24% Similarity=0.247 Sum_probs=184.4
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.|+.+|+++.++...... ...+...+|+|||++|++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~~---~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLF---KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCcc---ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEc
Confidence 478899998875321100 00123579999999999999999999999999999999999876 4589999999876
Q ss_pred Ch------hhhcceeeEeecCC--CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCC
Q 000913 935 KQ------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGV 1005 (1226)
Q Consensus 935 ~~------~~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~ 1005 (1226)
.. ..+++.++||+|++ .+.+.+||.+++.+..... ......+.++++.++++.++|.+ ..+.. +
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYDRY-----P 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhcCC-----C
Confidence 32 13456799999997 5788899999987754332 12345556678999999999963 45554 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecC
Q 000913 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1226)
Q Consensus 1006 ~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~G 1084 (1226)
..||||||||++||+||+.+|+|||+||||+|||..++..|+++|+++.++ |.|||++|||++ .+.+.+|++++|.+
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~- 230 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL- 230 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999764 999999999986 46678999999986
Q ss_pred cEEEEeCCC
Q 000913 1085 GQEIYVGPL 1093 (1226)
Q Consensus 1085 g~~~y~G~~ 1093 (1226)
|+++..|+.
T Consensus 231 G~ive~g~~ 239 (327)
T PRK11308 231 GRCVEKGTK 239 (327)
T ss_pred CEEEEECCH
Confidence 799999985
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=326.03 Aligned_cols=212 Identities=27% Similarity=0.395 Sum_probs=180.1
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh
Q 000913 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1226)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1226)
.++|+++.++ .+.+|+|+|++++||++++|+|+||||||||+++|+|..+ +..|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~~ 66 (232)
T cd03300 2 ELENVSKFYG-------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITN 66 (232)
T ss_pred EEEeEEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCc
Confidence 5677877763 2469999999999999999999999999999999999876 457999999987643
Q ss_pred h-hhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 000913 937 E-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1015 (1226)
Q Consensus 937 ~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqr 1015 (1226)
. ..++.++|++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..+..+ ..||+|||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (232)
T cd03300 67 LPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQR 138 (232)
T ss_pred CChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHH
Confidence 1 234679999999998888999999988654332 223344556889999999988777663 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 000913 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1016 l~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
++||++|+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999999999999999999999999998764 899999999986 47889999999986 688888863
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=345.46 Aligned_cols=203 Identities=22% Similarity=0.316 Sum_probs=176.5
Q ss_pred CceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCc----cCC---hhh---h-cceeeEee
Q 000913 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY----PKK---QET---F-ARISGYCE 947 (1226)
Q Consensus 879 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~----~~~---~~~---~-~~~~gyv~ 947 (1226)
+...+|+|+||+|++||+++|||+||||||||+++|+|... +..|+|.++|. ++. ... + ++.++||+
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 45679999999999999999999999999999999999876 56899999995 221 111 2 24699999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000913 948 QNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 1027 (1226)
Q Consensus 948 Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~ 1027 (1226)
|++.+++.+||+||+.|+...+ ..+..++++++.++++.++|.+..+..+ ..||||||||++|||+|+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999875443 2345566678899999999998887764 4699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 000913 1028 IIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1028 il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
||+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~ 249 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTP 249 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999764 999999999987 57899999999986 799999985
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=324.76 Aligned_cols=201 Identities=27% Similarity=0.346 Sum_probs=162.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC------ccceEEEecCCC--CC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHD--NH 237 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d--~~ 237 (1226)
++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++ .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 5999999999999999999999999999999999999998 999999999876543 235799999987 46
Q ss_pred CCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-ccccccc
Q 000913 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMV 316 (1226)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 316 (1226)
++.+||+||+.+.....+.....+ ......+.+++.++|. ...+..
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~~~~~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~- 142 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKLSKKE--------------------------------ARKEAVLLLLVGVGLPEEVLNRY- 142 (228)
T ss_pred CCcCCHHHHHHHHHHhccCCcHHH--------------------------------HHHHHHHHHHHHCCCChhHhhCC-
Confidence 678999999988654321100000 0011124567888885 444544
Q ss_pred cccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEE
Q 000913 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1226)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1226)
+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++...+ ++||.++|+..++.+++|+|+
T Consensus 143 ----~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~~~~d~i~ 217 (228)
T cd03257 143 ----PHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELG-LTLLFITHDLGVVAKIADRVA 217 (228)
T ss_pred ----chhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHhcCeEE
Confidence 456999999999999999999999999999999999999999999998765224 455557778888888999999
Q ss_pred EEcCCeEEEec
Q 000913 397 LLSDGQIVYQG 407 (1226)
Q Consensus 397 lL~~G~iv~~G 407 (1226)
+|++|+++..|
T Consensus 218 ~l~~G~i~~~g 228 (228)
T cd03257 218 VMYAGKIVEEG 228 (228)
T ss_pred EEeCCEEEecC
Confidence 99999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=326.14 Aligned_cols=201 Identities=26% Similarity=0.352 Sum_probs=165.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc----cceEEEecCCCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1226)
++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (230)
T TIGR03410 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRL 90 (230)
T ss_pred EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCC
Confidence 4999999999999999999999999999999999999998 9999999988754432 35699999999899999
Q ss_pred CHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcC-Ccccccccccccc
Q 000913 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG-LDVCADTMVGDEM 320 (1226)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~~ 320 (1226)
||+||+.++....+.. . ....+.+++.++ +.+..++.
T Consensus 91 tv~~~l~~~~~~~~~~-~------------------------------------~~~~~~~l~~~~~l~~~~~~~----- 128 (230)
T TIGR03410 91 TVEENLLTGLAALPRR-S------------------------------------RKIPDEIYELFPVLKEMLGRR----- 128 (230)
T ss_pred cHHHHHHHHHHhcCcc-h------------------------------------HHHHHHHHHHHHhHHHHhhCC-----
Confidence 9999998875432110 0 001234455554 44444443
Q ss_pred cCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcC
Q 000913 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1226)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1226)
++.||||||||++||++|+.+|++++|||||+|||+.+..++.+.|+++.+. .+++|+.++|+..++.+++|+|++|++
T Consensus 129 ~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~ 207 (230)
T TIGR03410 129 GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE-GGMAILLVEQYLDFARELADRYYVMER 207 (230)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 4569999999999999999999999999999999999999999999987643 244555577888899999999999999
Q ss_pred CeEEEecChhHH
Q 000913 401 GQIVYQGPRELV 412 (1226)
Q Consensus 401 G~iv~~G~~~~~ 412 (1226)
|++++.|+.+++
T Consensus 208 g~i~~~~~~~~~ 219 (230)
T TIGR03410 208 GRVVASGAGDEL 219 (230)
T ss_pred CEEEEECCHHHc
Confidence 999999998876
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=333.94 Aligned_cols=215 Identities=24% Similarity=0.309 Sum_probs=180.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++. +++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 7 ~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEec
Confidence 5889999887631 12468999999999999999999999999999999999876 4689999999876
Q ss_pred Ch---hhhcceeeEeecCCC-CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 000913 935 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1226)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSg 1010 (1226)
.. ..+++.++|++|++. .++.+||+||+.+..... ..+.++.++.++++++.++|.+..++.+ ..|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCH
Confidence 43 235667999999974 566789999998864322 1233445567889999999988777763 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 000913 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1226)
Q Consensus 1011 Gqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y 1089 (1226)
|||||++||+||+.+|++|+|||||+|||+.++..+++.|+++.++ ++|||+++|+++. + ..+|++++|++ |++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~-G~i~~ 222 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSE-GKLIA 222 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998766 5999999999873 4 47999999986 78888
Q ss_pred eCCC
Q 000913 1090 VGPL 1093 (1226)
Q Consensus 1090 ~G~~ 1093 (1226)
.|+.
T Consensus 223 ~g~~ 226 (271)
T PRK13632 223 QGKP 226 (271)
T ss_pred ecCH
Confidence 8874
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-36 Score=328.11 Aligned_cols=198 Identities=23% Similarity=0.376 Sum_probs=167.5
Q ss_pred eecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHH
Q 000913 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 963 (1226)
Q Consensus 884 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~ 963 (1226)
|+|+|+++++|++++|+||||||||||+++|+|... +.+|+|.++|.++..... ..+|++|++.+++.+||.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHHH
Confidence 579999999999999999999999999999999876 568999999987643211 2489999999999999999998
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 000913 964 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1043 (1226)
Q Consensus 964 f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~ 1043 (1226)
+...... .....++.++.+.++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVL-PDLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 7532111 12333444566889999999987777653 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 000913 1044 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1044 ~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
..+++.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 9999999998764 899999999987 57888999999986 688887753
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=327.67 Aligned_cols=205 Identities=19% Similarity=0.335 Sum_probs=169.9
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc----cceEEEecCCCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1226)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|+++|.++....+ ++.++|++|++.+++.+
T Consensus 17 ~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (241)
T PRK10895 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRL 93 (241)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccC
Confidence 4999999999999999999999999999999999999998 9999999998755432 35799999998889999
Q ss_pred CHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 000913 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1226)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1226)
||+||+.+..+....... .+....++.+++.+||++..+.. +
T Consensus 94 tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~ 135 (241)
T PRK10895 94 SVYDNLMAVLQIRDDLSA---------------------------------EQREDRANELMEEFHIEHLRDSM-----G 135 (241)
T ss_pred cHHHHHhhhhhcccccCH---------------------------------HHHHHHHHHHHHHcCCHHHhhcc-----h
Confidence 999999876432110000 00112356678899997655544 4
Q ss_pred CCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCC
Q 000913 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1226)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1226)
+.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++.. .+. +|+.++|+..++.+++|++++|++|
T Consensus 136 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~-tiii~sH~~~~~~~~~d~v~~l~~G 213 (241)
T PRK10895 136 QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGL-GVLITDHNVRETLAVCERAYIVSQG 213 (241)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCC-EEEEEEcCHHHHHHhcCEEEEEeCC
Confidence 56999999999999999999999999999999999999999999988753 344 4555677888999999999999999
Q ss_pred eEEEecChhHHH
Q 000913 402 QIVYQGPRELVL 413 (1226)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1226)
++++.|+++++.
T Consensus 214 ~i~~~~~~~~~~ 225 (241)
T PRK10895 214 HLIAHGTPTEIL 225 (241)
T ss_pred eEEeeCCHHHHh
Confidence 999999988763
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=322.88 Aligned_cols=221 Identities=26% Similarity=0.359 Sum_probs=191.2
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-------cceEEEecCCCCC
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1226)
..-++|+|+.++.||+..|||=||||||||+++|.++.+|+ +|+|+++|.++...+. ++.++.|+|...+
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaL 117 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFAL 117 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcc
Confidence 44689999999999999999999999999999999999998 9999999999876653 3679999999999
Q ss_pred CCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 000913 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1226)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1226)
+|..||.||..|+.+.+|.... +.+.++.+.|+..||+...+.+
T Consensus 118 lPhrtVl~Nv~fGLev~Gv~~~----------------------------------er~~~a~~~l~~VgL~~~~~~y-- 161 (386)
T COG4175 118 LPHRTVLENVAFGLEVQGVPKA----------------------------------EREERALEALELVGLEGYADKY-- 161 (386)
T ss_pred ccchhHhhhhhcceeecCCCHH----------------------------------HHHHHHHHHHHHcCchhhhhcC--
Confidence 9999999999999999886421 1223466789999999888755
Q ss_pred ccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEE
Q 000913 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1226)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iil 397 (1226)
+.+||||+||||.|||||+.+|+||+||||+|+|||--+.++.+-|.++-...++ +|+.++|+..|++++.|||.+
T Consensus 162 ---p~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~K-TIvFitHDLdEAlriG~rIai 237 (386)
T COG4175 162 ---PNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKK-TIVFITHDLDEALRIGDRIAI 237 (386)
T ss_pred ---cccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCC-eEEEEecCHHHHHhccceEEE
Confidence 4579999999999999999999999999999999999999999988887665444 556689999999999999999
Q ss_pred EcCCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHHh
Q 000913 398 LSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436 (1226)
Q Consensus 398 L~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v 436 (1226)
|.+|+||..|+++|++. .|...-+++|...+
T Consensus 238 mkdG~ivQ~Gtp~eIl~--------~PAndYV~~Fv~~v 268 (386)
T COG4175 238 MKDGEIVQVGTPEEILL--------NPANDYVRDFVRNV 268 (386)
T ss_pred ecCCeEEEeCCHHHHHc--------CccHHHHHHHHhcC
Confidence 99999999999999874 34444455666544
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=339.01 Aligned_cols=213 Identities=21% Similarity=0.237 Sum_probs=172.6
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CceeEEEEcCccCCCCCc-------cceEEEecCCC-
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL-KVSGTVTYNGHDMDEFVP-------QRTAAYISQHD- 235 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d- 235 (1226)
..+|+||||+|++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|.++..... ++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 469999999999999999999999999999999999997421 128999999998865432 13699999987
Q ss_pred -CCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 000913 236 -NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1226)
Q Consensus 236 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1226)
.+.|.+||.+++........... ..+....++.+|+.+||++..+
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~~---------------------------------~~~~~~~~~~~L~~~gL~~~~~- 145 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGGN---------------------------------KKTRRQRAIDLLNQVGIPDPAS- 145 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCCC---------------------------------HHHHHHHHHHHHHHCCCCChHH-
Confidence 47899999999876543221000 0111234677899999974211
Q ss_pred cccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCc
Q 000913 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1226)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1226)
+-++.+.+|||||||||+||+||+.+|++|++||||+|||..++.++++.|+++... .+.+++.++|+...+.+++|+
T Consensus 146 -~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~-~g~til~iTHdl~~~~~~adr 223 (326)
T PRK11022 146 -RLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQK-ENMALVLITHDLALVAEAAHK 223 (326)
T ss_pred -HHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCE
Confidence 123456679999999999999999999999999999999999999999999998653 345666688999999999999
Q ss_pred EEEEcCCeEEEecChhHHH
Q 000913 395 IILLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 395 iilL~~G~iv~~G~~~~~~ 413 (1226)
|++|++|++++.|+.+++.
T Consensus 224 i~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 224 IIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred EEEEECCEEEEECCHHHHh
Confidence 9999999999999998875
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=330.40 Aligned_cols=225 Identities=23% Similarity=0.261 Sum_probs=182.3
Q ss_pred cCCCCceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCC---ceEEE
Q 000913 849 LPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITG 925 (1226)
Q Consensus 849 ~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G 925 (1226)
+|..+..+.++|+++.++ .+.+|+|||+++++||++||+|+|||||||||++|+|...+ .+.+|
T Consensus 14 ~~~~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G 80 (267)
T PRK14237 14 FPEEEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTG 80 (267)
T ss_pred cCCCCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcce
Confidence 344455789999998873 24699999999999999999999999999999999998642 14689
Q ss_pred EEEEcCccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 000913 926 NITISGYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 1000 (1226)
Q Consensus 926 ~i~i~g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~ 1000 (1226)
+|.++|.+... ...++.++|++|++.+++ .||+||+.+..... .....++.++.+.++++.++|.+..+...
T Consensus 81 ~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~ 157 (267)
T PRK14237 81 QILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDL 157 (267)
T ss_pred EEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhh
Confidence 99999987632 234567999999988777 69999998864322 11233344566888999999864322222
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEE
Q 000913 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1080 (1226)
Q Consensus 1001 g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~l 1080 (1226)
+. .+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||+++|+++ ++.+.||++++
T Consensus 158 ~~-~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~ 234 (267)
T PRK14237 158 HK-SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAF 234 (267)
T ss_pred cC-CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEE
Confidence 22 246799999999999999999999999999999999999999999999985 4799999999987 57889999999
Q ss_pred EecCcEEEEeCCC
Q 000913 1081 MKRGGQEIYVGPL 1093 (1226)
Q Consensus 1081 l~~Gg~~~y~G~~ 1093 (1226)
|++ |++++.|+.
T Consensus 235 l~~-G~i~~~g~~ 246 (267)
T PRK14237 235 FYL-GDLIEYDKT 246 (267)
T ss_pred EEC-CEEEEeCCH
Confidence 985 799999875
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=322.54 Aligned_cols=215 Identities=26% Similarity=0.337 Sum_probs=180.3
Q ss_pred cceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-C-CCCceeEEEEcCccCCCCCc-------cceEEEecCC
Q 000913 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-P-TLKVSGTVTYNGHDMDEFVP-------QRTAAYISQH 234 (1226)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-~-~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~ 234 (1226)
...+++||||.+++||+++|+|.|||||||+.++|.|+++ + ....+|+|.|+|.++-.+.. .+.++||+|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4569999999999999999999999999999999999998 4 33568999999998755543 2579999998
Q ss_pred C--CCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccc
Q 000913 235 D--NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (1226)
Q Consensus 235 d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1226)
+ .+-|.+||.+.+.-..+.+.... ..++...++.++|+.+||++-.
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~--------------------------------~~~ea~~~a~~~L~~Vgi~~~~ 144 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL--------------------------------SKKEAKERAIELLELVGIPDPE 144 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch--------------------------------hhHHHHHHHHHHHHHcCCCCHH
Confidence 5 68899999998876554321100 0112334567789999998632
Q ss_pred cccccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhc
Q 000913 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (1226)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 392 (1226)
.+.+.++.+|||||||||.||.||+.+|++||.|||||+||..++.+|++.|+++.+ ..++.++.|+|+..-+.++|
T Consensus 145 --~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~-e~~~aiilITHDl~vva~~a 221 (316)
T COG0444 145 --RRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQR-EKGTALILITHDLGVVAEIA 221 (316)
T ss_pred --HHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhc
Confidence 234567889999999999999999999999999999999999999999999999987 56777888999999999999
Q ss_pred CcEEEEcCCeEEEecChhHHH
Q 000913 393 DDIILLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 393 D~iilL~~G~iv~~G~~~~~~ 413 (1226)
|+|+||..|+||+.|+.+++.
T Consensus 222 Dri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 222 DRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred ceEEEEECcEEEEeCCHHHHh
Confidence 999999999999999999874
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=331.43 Aligned_cols=216 Identities=23% Similarity=0.266 Sum_probs=178.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCC---ceEEEEEEEcC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITISG 931 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~g 931 (1226)
.++++|+++.++ ++.+|+|+|++|++|++++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 588999998874 24699999999999999999999999999999999997642 13689999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcc----cccccCC
Q 000913 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL----RQSLVGL 1002 (1226)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~----~~~~~g~ 1002 (1226)
.++.. ..+++.++|++|++.+++. ||.||+.|....+.. .....+..+.++++++.+++.+. .+..
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 160 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEP--- 160 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCC---
Confidence 87632 2345679999999887774 999999987543321 11223345568899999999642 2332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 000913 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1226)
Q Consensus 1003 ~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~ 1082 (1226)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ .+.+.+|++++|+
T Consensus 161 --~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~ 236 (267)
T PRK14235 161 --GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFH 236 (267)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 789999999987 4778899999998
Q ss_pred cCcEEEEeCCC
Q 000913 1083 RGGQEIYVGPL 1093 (1226)
Q Consensus 1083 ~Gg~~~y~G~~ 1093 (1226)
+ |+++..|+.
T Consensus 237 ~-G~i~~~g~~ 246 (267)
T PRK14235 237 L-GNLVEVGDT 246 (267)
T ss_pred C-CEEEEeCCH
Confidence 6 789998864
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=326.88 Aligned_cols=202 Identities=25% Similarity=0.387 Sum_probs=165.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc----cceEEEecCCCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1226)
.+|+|+|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (237)
T PRK11614 19 QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRM 95 (237)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCC
Confidence 4999999999999999999999999999999999999998 9999999998765432 35699999998889999
Q ss_pred CHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHc-CCcccccccccccc
Q 000913 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLDVCADTMVGDEM 320 (1226)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~~ 320 (1226)
||+||+.++..... . + +. ...++.+++.+ ++.+..++.
T Consensus 96 tv~~~l~~~~~~~~---~-~---~~-----------------------------~~~~~~~l~~~~~l~~~~~~~----- 134 (237)
T PRK11614 96 TVEENLAMGGFFAE---R-D---QF-----------------------------QERIKWVYELFPRLHERRIQR----- 134 (237)
T ss_pred cHHHHHHHhhhccC---h-h---HH-----------------------------HHHHHHHHHHHHHHHHHHhCc-----
Confidence 99999988642110 0 0 00 01123345555 355444433
Q ss_pred cCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcC
Q 000913 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1226)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1226)
+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. .+.| ||.++|+..++.+++|++++|++
T Consensus 135 ~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~t-iii~sH~~~~~~~~~d~i~~l~~ 212 (237)
T PRK11614 135 AGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMT-IFLVEQNANQALKLADRGYVLEN 212 (237)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCE-EEEEeCcHHHHHhhCCEEEEEeC
Confidence 456999999999999999999999999999999999999999999998764 3445 55577888899999999999999
Q ss_pred CeEEEecChhHHH
Q 000913 401 GQIVYQGPRELVL 413 (1226)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1226)
|++++.|+++++.
T Consensus 213 G~i~~~~~~~~~~ 225 (237)
T PRK11614 213 GHVVLEDTGDALL 225 (237)
T ss_pred CEEEeeCCHHHHh
Confidence 9999999988764
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=338.36 Aligned_cols=220 Identities=18% Similarity=0.237 Sum_probs=180.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCC-c-eEEEEEEEcCcc
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-G-YITGNITISGYP 933 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~-~-~~~G~i~i~g~~ 933 (1226)
++++|+++.++... +...+|+||||+|++||++||+|+||||||||+++|+|...+ + +.+|+|.++|.+
T Consensus 4 L~v~~l~~~~~~~~---------~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~ 74 (326)
T PRK11022 4 LNVDKLSVHFGDES---------APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD 74 (326)
T ss_pred EEEeCeEEEECCCC---------ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE
Confidence 68899988875321 125699999999999999999999999999999999997642 2 368999999987
Q ss_pred CCh---hhh----cceeeEeecCC--CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcc---cccccC
Q 000913 934 KKQ---ETF----ARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL---RQSLVG 1001 (1226)
Q Consensus 934 ~~~---~~~----~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~---~~~~~g 1001 (1226)
+.. ..+ ++.++||+|++ .+.|.+||.+++........ ....++.++++.++++.++|.+. .+..
T Consensus 75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~-- 150 (326)
T PRK11022 75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVY-- 150 (326)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCC--
Confidence 642 111 23699999998 47888999988876543321 23445566788999999999753 3333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEE
Q 000913 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFL 1080 (1226)
Q Consensus 1002 ~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~H~p~~~i~~~~D~v~l 1080 (1226)
+..|||||||||+||+||+.+|+||++||||+|||+.++..++++|+++.+ .|.|||++|||++ .+.+.+|++++
T Consensus 151 ---p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~v 226 (326)
T PRK11022 151 ---PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIV 226 (326)
T ss_pred ---chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 457999999999999999999999999999999999999999999999976 5999999999987 47788999999
Q ss_pred EecCcEEEEeCCC
Q 000913 1081 MKRGGQEIYVGPL 1093 (1226)
Q Consensus 1081 l~~Gg~~~y~G~~ 1093 (1226)
|.. |+++..|+.
T Consensus 227 m~~-G~ive~g~~ 238 (326)
T PRK11022 227 MYA-GQVVETGKA 238 (326)
T ss_pred EEC-CEEEEECCH
Confidence 985 799999985
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=338.20 Aligned_cols=208 Identities=20% Similarity=0.251 Sum_probs=174.3
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc------cceEEEecCCC--C
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHD--N 236 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d--~ 236 (1226)
..+|+|||+.|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++..... ++.++||+|++ .
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 56999999999999999999999999999999999999987 9999999998765432 35799999987 5
Q ss_pred CCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc-ccccc
Q 000913 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTM 315 (1226)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 315 (1226)
+.+.+||.+++.+..+...... ..+....+..+++.+||+. .+++
T Consensus 105 l~p~~~v~~~l~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~gL~~~~~~~- 150 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTSLS---------------------------------AAERREKALAMMAKVGLRPEHYDR- 150 (327)
T ss_pred cCCccCHHHHHHHHHHHccCCC---------------------------------HHHHHHHHHHHHHHCCCChHHhcC-
Confidence 8899999999987654321000 0011234677899999963 4554
Q ss_pred ccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcE
Q 000913 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1226)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1226)
.+..|||||||||+||+||+.+|++||+||||+|||..++.+|++.|+++.+. .+++|+.++|+...+.+++|+|
T Consensus 151 ----~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~adrv 225 (327)
T PRK11308 151 ----YPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQE-LGLSYVFISHDLSVVEHIADEV 225 (327)
T ss_pred ----CCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEE
Confidence 45579999999999999999999999999999999999999999999987653 3556666899999999999999
Q ss_pred EEEcCCeEEEecChhHHHH
Q 000913 396 ILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1226)
++|++|++++.|+.+++.+
T Consensus 226 ~vm~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIFN 244 (327)
T ss_pred EEEECCEEEEECCHHHHhc
Confidence 9999999999999988753
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=326.72 Aligned_cols=206 Identities=24% Similarity=0.390 Sum_probs=168.4
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCC-----CccceEEEecCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1226)
.+|+|+|+.|++||+++|+|||||||||||++|+|.++|+ ...+|+|+++|+++... ..++.++|++|++.++
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF 94 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence 3899999999999999999999999999999999999863 22389999999987542 1246799999998888
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc----ccccc
Q 000913 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD----VCADT 314 (1226)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (1226)
+ +||+||+.+.....+.... .+....++.+++.+||. +..++
T Consensus 95 ~-~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (247)
T TIGR00972 95 P-MSIYDNIAYGPRLHGIKDK---------------------------------KELDEIVEESLKKAALWDEVKDRLHD 140 (247)
T ss_pred C-CCHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCCcchhhHhhC
Confidence 8 9999999987543221000 00112356678889997 44444
Q ss_pred cccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCc
Q 000913 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1226)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1226)
. +..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.. + .+||.++|+..++.+++|+
T Consensus 141 ~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~ 212 (247)
T TIGR00972 141 S-----ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--K-YTIVIVTHNMQQAARISDR 212 (247)
T ss_pred C-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--c-CeEEEEecCHHHHHHhCCE
Confidence 3 456999999999999999999999999999999999999999999998754 3 4556678888899999999
Q ss_pred EEEEcCCeEEEecChhHHH
Q 000913 395 IILLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 395 iilL~~G~iv~~G~~~~~~ 413 (1226)
|++|++|+++++|+++++.
T Consensus 213 i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 213 TAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988763
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=328.88 Aligned_cols=205 Identities=22% Similarity=0.322 Sum_probs=170.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC----------------ccceEE
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV----------------PQRTAA 229 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~----------------~~~~~~ 229 (1226)
++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 90 (252)
T TIGR03005 14 TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIG 90 (252)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCeE
Confidence 4999999999999999999999999999999999999998 999999998875321 146799
Q ss_pred EecCCCCCCCCCCHHHHHHHHhHh-cCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCC
Q 000913 230 YISQHDNHIGEMTVRETLAFSARC-QGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (1226)
Q Consensus 230 yv~Q~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL 308 (1226)
|++|++.+++.+||+||+.++... .+.. . .+....++.+++.+|+
T Consensus 91 ~v~q~~~~~~~~tv~~nl~~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~gl 136 (252)
T TIGR03005 91 MVFQSFNLFPHKTVLDNVTEAPVLVLGMA-R---------------------------------AEAEKRAMELLDMVGL 136 (252)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHhcCCC-H---------------------------------HHHHHHHHHHHHHcCC
Confidence 999998889999999999875321 1100 0 0011234667889999
Q ss_pred cccccccccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhH
Q 000913 309 DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (1226)
Q Consensus 309 ~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~ 388 (1226)
++..+.. ++.||||||||++||++|+.+|+++||||||+|||+.+...+.+.|+++... .+++|+.++|+..++
T Consensus 137 ~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~~~~ 210 (252)
T TIGR03005 137 ADKADHM-----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE-HDLTMLLVTHEMGFA 210 (252)
T ss_pred hhHhhcC-----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHH
Confidence 8766544 4569999999999999999999999999999999999999999999987653 345556678888899
Q ss_pred HhhcCcEEEEcCCeEEEecChhHHH
Q 000913 389 YDLFDDIILLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 389 ~~~~D~iilL~~G~iv~~G~~~~~~ 413 (1226)
.+++|++++|++|++++.|+.+++.
T Consensus 211 ~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 211 REFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999988763
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=322.94 Aligned_cols=196 Identities=24% Similarity=0.356 Sum_probs=160.2
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-------cceEEEecCCCCC
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNH 237 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1226)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 45999999999999999999999999999999999999998 9999999998765432 1469999999888
Q ss_pred CCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 000913 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1226)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1226)
++.+||+||+.+......... .+....+..+++.+||++..+..+
T Consensus 95 ~~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 139 (221)
T TIGR02211 95 LPDFTALENVAMPLLIGKKSV----------------------------------KEAKERAYEMLEKVGLEHRINHRP- 139 (221)
T ss_pred CCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh-
Confidence 889999999998653221100 001123456788999987666544
Q ss_pred ccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEE
Q 000913 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1226)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iil 397 (1226)
..|||||||||+||++|+.+|++|||||||+|||..++..+.+.|+++++..+.| |+.++|+..++. .+|+|++
T Consensus 140 ----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~tH~~~~~~-~~d~v~~ 213 (221)
T TIGR02211 140 ----SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTS-FLVVTHDLELAK-KLDRVLE 213 (221)
T ss_pred ----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHh-hcCEEEE
Confidence 4699999999999999999999999999999999999999999999876533445 455667766664 5799999
Q ss_pred EcCCeEE
Q 000913 398 LSDGQIV 404 (1226)
Q Consensus 398 L~~G~iv 404 (1226)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=325.50 Aligned_cols=233 Identities=24% Similarity=0.311 Sum_probs=181.9
Q ss_pred EEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHH
Q 000913 119 VRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL 198 (1226)
Q Consensus 119 v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L 198 (1226)
|+.+|++.++.... .-+++.|.+.+.+ ..+...+++|+|+|+.+++|++++|+|||||||||||++|
T Consensus 1 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~----------~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i 67 (236)
T cd03267 1 IEVSNLSKSYRVYS---KEPGLIGSLKSLF----------KRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKIL 67 (236)
T ss_pred CceecchhhccCcC---CccccchhHHHHH----------hcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 35678888886532 2233444444332 1233446799999999999999999999999999999999
Q ss_pred hcCCCCCCCceeEEEEcCccCCCC--CccceEEEec-CCCCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCC
Q 000913 199 AGKLDPTLKVSGTVTYNGHDMDEF--VPQRTAAYIS-QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI 275 (1226)
Q Consensus 199 ~G~~~~~~~~~G~I~~nG~~~~~~--~~~~~~~yv~-Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (1226)
+|.++|+ +|+|.++|.+.... ..++.++|++ |++.+++.+||+||+.+.....+...
T Consensus 68 ~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~----------------- 127 (236)
T cd03267 68 SGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPP----------------- 127 (236)
T ss_pred hCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCH-----------------
Confidence 9999998 99999999875332 1245799997 55667889999999988654332110
Q ss_pred CCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCC
Q 000913 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLD 355 (1226)
Q Consensus 276 ~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLD 355 (1226)
++....++.+++.+||++..|+.++ .||||||||++||++|+.+|++++|||||+|||
T Consensus 128 -----------------~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 128 -----------------ARFKKRLDELSELLDLEELLDTPVR-----QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred -----------------HHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 0011234567888999888887654 599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEEEec
Q 000913 356 SSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407 (1226)
Q Consensus 356 s~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G 407 (1226)
+.++..+.+.|+++++..+ ++|+.++|+..++.+++|++++|.+|++++.|
T Consensus 186 ~~~~~~l~~~l~~~~~~~~-~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 186 VVAQENIRNFLKEYNRERG-TTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHHhcCC-CEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999998765334 45555778888899999999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=332.29 Aligned_cols=218 Identities=26% Similarity=0.356 Sum_probs=177.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCc------eEEEEEEE
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------YITGNITI 929 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~------~~~G~i~i 929 (1226)
++++|+++.++ ++.+|+|+|++|++|++++|+|||||||||||++|+|..++. ..+|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 56788887763 246999999999999999999999999999999999986521 12799999
Q ss_pred cCccCCh---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 000913 930 SGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 1005 (1226)
Q Consensus 930 ~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~ 1005 (1226)
+|.+... ..+++.++|++|++..++.+||+||+.+....... .....++.++.++++++.+++.+..++. +
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD-----V 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-----c
Confidence 9987532 23456689999998766669999999875321110 0111123345688999999998776655 3
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhc
Q 000913 1006 SGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAF 1075 (1226)
Q Consensus 1006 ~~LSgGqrqrl~ia~~L~---------~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~ 1075 (1226)
..|||||||||+||++|+ .+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|+++ ++.+.+
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 579999999999999999 599999999999999999999999999998765 899999999987 477889
Q ss_pred CeEEEEecCcEEEEeCCC
Q 000913 1076 DELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1076 D~v~ll~~Gg~~~y~G~~ 1093 (1226)
|++++|++ |++++.|+.
T Consensus 223 d~i~~l~~-G~i~~~g~~ 239 (272)
T PRK13547 223 DRIAMLAD-GAIVAHGAP 239 (272)
T ss_pred CEEEEEEC-CeEEEecCH
Confidence 99999986 789999875
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=322.24 Aligned_cols=194 Identities=27% Similarity=0.391 Sum_probs=162.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC------ccceEEEecCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (1226)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 15 ~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (214)
T cd03292 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLP 91 (214)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhcc
Confidence 4999999999999999999999999999999999999998 999999999875432 2357999999998999
Q ss_pred CCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 000913 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1226)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1226)
.+||+||+.++....+.. . ++....++.+++.+||++..++.+
T Consensus 92 ~~t~~~~l~~~~~~~~~~--~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 134 (214)
T cd03292 92 DRNVYENVAFALEVTGVP--P--------------------------------REIRKRVPAALELVGLSHKHRALP--- 134 (214)
T ss_pred CCcHHHHHHHHHHHcCCC--H--------------------------------HHHHHHHHHHHHHcCCHHHhhCCh---
Confidence 999999999875432210 0 001123566788899987666554
Q ss_pred ccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEc
Q 000913 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1226)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1226)
..||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++.+ .+ ++||.++|+..++.+++|++++|+
T Consensus 135 --~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~-~tiiivtH~~~~~~~~~d~i~~l~ 210 (214)
T cd03292 135 --AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AG-TTVVVATHAKELVDTTRHRVIALE 210 (214)
T ss_pred --hhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhCCEEEEEe
Confidence 46999999999999999999999999999999999999999999998754 34 455557788888989999999999
Q ss_pred CCeE
Q 000913 400 DGQI 403 (1226)
Q Consensus 400 ~G~i 403 (1226)
+|++
T Consensus 211 ~G~~ 214 (214)
T cd03292 211 RGKL 214 (214)
T ss_pred CCcC
Confidence 9974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=322.34 Aligned_cols=198 Identities=23% Similarity=0.298 Sum_probs=167.7
Q ss_pred EeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh-hhhcceeeEeecCCCCCCCCCHHHH
Q 000913 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTIYES 961 (1226)
Q Consensus 883 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~E~ 961 (1226)
+++|+|+++++|++++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|++||
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 3579999999999999999999999999999999876 468999999987642 2345679999999999888999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000913 962 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041 (1226)
Q Consensus 962 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~ 1041 (1226)
+.+...... ... ...++.++++++.+++.+..++. +..||||||||++||++|+.+|++|+|||||+|||+.
T Consensus 91 ~~~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 162 (213)
T TIGR01277 91 IGLGLHPGL--KLN-AEQQEKVVDAAQQVGIADYLDRL-----PEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162 (213)
T ss_pred HHhHhhccC--Ccc-HHHHHHHHHHHHHcCcHHHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 987532211 111 22345678899999998777766 3579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCC
Q 000913 1042 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1226)
Q Consensus 1042 ~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~ 1092 (1226)
++..+++.|+++.++ |+|||+++|++. ++.+.+|++++|++ |+++..|.
T Consensus 163 ~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~-g~i~~~~~ 212 (213)
T TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQ-GKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEEC-CeEEEecC
Confidence 999999999998764 899999999986 47788999999985 78888774
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=335.10 Aligned_cols=219 Identities=22% Similarity=0.292 Sum_probs=181.1
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.+.++|+++.++.... ...+.+|+|||++|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~~-------~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNEE-------STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCCC-------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEec
Confidence 3788999988752100 012469999999999999999999999999999999999876 5689999999876
Q ss_pred Ch----hhhcceeeEeecCCCC-CCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 000913 935 KQ----ETFARISGYCEQNDIH-SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1226)
Q Consensus 935 ~~----~~~~~~~gyv~Q~~~~-~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LS 1009 (1226)
.. ...++.+||++|++.. +...||.|++.|..... .....+.+++++++++.++|.+..++.+ ..||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCC
Confidence 43 2346679999999742 33469999999875432 2334455667899999999998887764 5799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 000913 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1226)
Q Consensus 1010 gGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~ 1088 (1226)
||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+ .|+|||+++|+++. +. .+|++++|++ |+++
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~-~~d~v~~l~~-G~i~ 223 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AV-EADRIIVMDS-GKVV 223 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hh-cCCEEEEEEC-CEEE
Confidence 9999999999999999999999999999999999999999999976 49999999999873 54 4999999986 7899
Q ss_pred EeCCC
Q 000913 1089 YVGPL 1093 (1226)
Q Consensus 1089 y~G~~ 1093 (1226)
+.|+.
T Consensus 224 ~~g~~ 228 (280)
T PRK13633 224 MEGTP 228 (280)
T ss_pred EecCH
Confidence 99875
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=332.18 Aligned_cols=216 Identities=24% Similarity=0.291 Sum_probs=181.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 5889999988742 11358999999999999999999999999999999999876 4689999999876
Q ss_pred Ch---hhhcceeeEeecCCC-CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 000913 935 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1226)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSg 1010 (1226)
.. ...++.++|++|++. +++..|+.+++.|..... ....++..+.++++++.+++.+..+.. +..||+
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCH
Confidence 42 245667999999974 677789999998864322 123444456788999999998877765 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 000913 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1226)
Q Consensus 1011 Gqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y 1089 (1226)
|||||++||+||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|++.. +.. +|++++|++ |++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~~-~d~i~~l~~-G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AME-ADHVIVMNK-GTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hhc-CCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 8999999999873 554 999999986 79999
Q ss_pred eCCCC
Q 000913 1090 VGPLG 1094 (1226)
Q Consensus 1090 ~G~~~ 1094 (1226)
.|+..
T Consensus 223 ~g~~~ 227 (269)
T PRK13648 223 EGTPT 227 (269)
T ss_pred ecCHH
Confidence 98753
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=363.34 Aligned_cols=221 Identities=21% Similarity=0.304 Sum_probs=185.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++ ++.+|+||||++++||+++|+||||||||||+++|+|...+++.+|+|.++|.+.
T Consensus 5 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 378899988773 2469999999999999999999999999999999999876433689999999876
Q ss_pred Chh----hhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 000913 935 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1226)
Q Consensus 935 ~~~----~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSg 1010 (1226)
... ..++.+|||+|++.+++.+||+||+.|....+.....+.++..++++++++.+++.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCH
Confidence 421 234569999999988899999999988653321111223344567889999999988777764 57999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 000913 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1226)
Q Consensus 1011 Gqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~ 1090 (1226)
||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|.|||+++|++. ++.+.+|++++|++ |++++.
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~ 224 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGT 224 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeee
Confidence 9999999999999999999999999999999999999999999878999999999986 47788999999986 789999
Q ss_pred CCCCc
Q 000913 1091 GPLGR 1095 (1226)
Q Consensus 1091 G~~~~ 1095 (1226)
|+...
T Consensus 225 ~~~~~ 229 (506)
T PRK13549 225 RPAAG 229 (506)
T ss_pred ccccc
Confidence 98653
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=320.58 Aligned_cols=189 Identities=23% Similarity=0.370 Sum_probs=162.5
Q ss_pred eEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC---h----hhhcceeeEeecCCCCC
Q 000913 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK---Q----ETFARISGYCEQNDIHS 953 (1226)
Q Consensus 881 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~---~----~~~~~~~gyv~Q~~~~~ 953 (1226)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.. . ...++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 469999999999999999999999999999999999876 56899999998742 1 12456799999999988
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000913 954 PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1033 (1226)
Q Consensus 954 ~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDE 1033 (1226)
+.+|++||+.+....+ .....+..+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 8899999999865432 1233444567889999999988777663 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 000913 1034 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1226)
Q Consensus 1034 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll 1081 (1226)
||+|||+.++..+.+.|+++.++|.|||+++|++. +.+.+|++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999998777999999999986 34689999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=338.70 Aligned_cols=224 Identities=19% Similarity=0.288 Sum_probs=182.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCc-eEEEEEEEcCcc
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGNITISGYP 933 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~ 933 (1226)
.++++|++..+... .+...+|+||||+|++||++||+|+||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 47899998877532 12356999999999999999999999999999999999987531 238999999987
Q ss_pred CCh---hh---hc-ceeeEeecCC--CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCC
Q 000913 934 KKQ---ET---FA-RISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG 1004 (1226)
Q Consensus 934 ~~~---~~---~~-~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~ 1004 (1226)
+.. .. ++ +.++||+|++ .+.+.+|+.+++.+...... ..+.++..+++.++++.++|.+..+.. + ..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~-~-~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRM-K-MY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHh-c-CC
Confidence 642 11 22 4699999998 57889999999887544332 234455567788999999997533221 1 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEec
Q 000913 1005 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1226)
Q Consensus 1005 ~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~ 1083 (1226)
+.+||||||||++||+||+.+|+||++||||+|||+.++..|+++|+++.++ |.|||++|||++ .+.+.+|++++|.+
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~ 237 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYA 237 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 4689999999999999999999999999999999999999999999999765 899999999987 46778999999985
Q ss_pred CcEEEEeCCC
Q 000913 1084 GGQEIYVGPL 1093 (1226)
Q Consensus 1084 Gg~~~y~G~~ 1093 (1226)
|+++..|+.
T Consensus 238 -G~ive~g~~ 246 (330)
T PRK09473 238 -GRTMEYGNA 246 (330)
T ss_pred -CEEEEECCH
Confidence 799999985
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=364.82 Aligned_cols=209 Identities=28% Similarity=0.379 Sum_probs=178.4
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000913 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1226)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1226)
..++++||+|+|+. .++.+|+|+|++++|||.+||+|+||||||||+++|+|... +.+|+|.+||.+
T Consensus 450 ~~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~ 516 (686)
T TIGR03797 450 GAIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQD 516 (686)
T ss_pred ceEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEE
Confidence 46999999999852 12469999999999999999999999999999999999877 568999999988
Q ss_pred CC---hhhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 000913 934 KK---QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLP 1003 (1226)
Q Consensus 934 ~~---~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~g~~ 1003 (1226)
+. ...+++.+|||+|++.+++ -|++||+.++. + .+ ++.++++++..++.+.. |+.+|..
T Consensus 517 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~-----~-~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~ 585 (686)
T TIGR03797 517 LAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA-----P-LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEG 585 (686)
T ss_pred cCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC-----C-CC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 65 3567888999999998876 59999998742 1 22 23477888888887643 4455544
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 000913 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1226)
Q Consensus 1004 ~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~ 1083 (1226)
..+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++ ++|+|+++|+++ ..+.+|++++|++
T Consensus 586 -G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~ 659 (686)
T TIGR03797 586 -GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDA 659 (686)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEEC
Confidence 3689999999999999999999999999999999999999999999886 589999999985 5678999999986
Q ss_pred CcEEEEeCCC
Q 000913 1084 GGQEIYVGPL 1093 (1226)
Q Consensus 1084 Gg~~~y~G~~ 1093 (1226)
|+++..|+.
T Consensus 660 -G~iv~~G~~ 668 (686)
T TIGR03797 660 -GRVVQQGTY 668 (686)
T ss_pred -CEEEEECCH
Confidence 799999984
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=327.47 Aligned_cols=219 Identities=21% Similarity=0.264 Sum_probs=176.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCC-ceEEEEEEEcCccC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGNITISGYPK 934 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~-~~~~G~i~i~g~~~ 934 (1226)
++++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|.++
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 56788887773 24699999999999999999999999999999999997532 24689999999876
Q ss_pred Ch---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 000913 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1226)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgG 1011 (1226)
.. ..+++.++|++|++.+++ .||+||+.+....+.... .....+++++++++.+++.+........ .+..||||
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~LS~G 146 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKLKQ-NALALSGG 146 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCccc-ChHHHHHHHHHHHHHcCCChhhhHHhcC-CcccCCHH
Confidence 43 234567999999988887 699999998654332111 1233445678899999995422111111 14579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 000913 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1226)
Q Consensus 1012 qrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G 1091 (1226)
||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.+ |+|||++||+++ ++.+.+|++++|++ |++++.|
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g 223 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GELIEFG 223 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CEEEEEC
Confidence 99999999999999999999999999999999999999999864 899999999986 47789999999986 7999988
Q ss_pred CC
Q 000913 1092 PL 1093 (1226)
Q Consensus 1092 ~~ 1093 (1226)
+.
T Consensus 224 ~~ 225 (246)
T PRK14269 224 ES 225 (246)
T ss_pred CH
Confidence 74
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=327.88 Aligned_cols=209 Identities=25% Similarity=0.344 Sum_probs=175.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++ ++.+|+|+|+++++|++++|+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEh
Confidence 367888888763 2469999999999999999999999999999999999865 4689999999875
Q ss_pred Ch---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCH
Q 000913 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLST 1010 (1226)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~LSg 1010 (1226)
.. ...++.++|++|++.+++ .||+||+.+....+ . . ..+++.++++.+++. +..++. +..|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G--E--KNVDVEYYLSIVGLNKEYATRD-----VKNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C--c--HHHHHHHHHHHcCCCHHHhhCC-----cccCCH
Confidence 32 234567999999988776 69999998753321 1 1 124578899999996 455554 457999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 000913 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1226)
Q Consensus 1011 Gqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y 1089 (1226)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |+++.
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~ 212 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVE 212 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 999999999987 47788999999986 68888
Q ss_pred eCCC
Q 000913 1090 VGPL 1093 (1226)
Q Consensus 1090 ~G~~ 1093 (1226)
.|+.
T Consensus 213 ~~~~ 216 (241)
T PRK14250 213 YAKT 216 (241)
T ss_pred eCCH
Confidence 8874
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=334.59 Aligned_cols=205 Identities=24% Similarity=0.358 Sum_probs=169.0
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC-------ccceEEEecCCCC-
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------PQRTAAYISQHDN- 236 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~-------~~~~~~yv~Q~d~- 236 (1226)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 35999999999999999999999999999999999999998 999999999875321 1357999999862
Q ss_pred CCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-cccccc
Q 000913 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTM 315 (1226)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1226)
.+..+||+||+.|+....+... .+....++.+++.+||+ ...++.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 142 (287)
T PRK13641 97 QLFENTVLKDVEFGPKNFGFSE----------------------------------DEAKEKALKWLKKVGLSEDLISKS 142 (287)
T ss_pred hhccchHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhHhhCC
Confidence 3446899999998654321100 01112356788899996 455554
Q ss_pred ccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcE
Q 000913 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1226)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1226)
++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.. . +++|+.++|+..++.+++|+|
T Consensus 143 -----~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~tvlivsH~~~~~~~~~d~v 215 (287)
T PRK13641 143 -----PFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-A-GHTVILVTHNMDDVAEYADDV 215 (287)
T ss_pred -----cccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEE
Confidence 456999999999999999999999999999999999999999999998753 3 455666888999999999999
Q ss_pred EEEcCCeEEEecChhHHH
Q 000913 396 ILLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1226)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=326.09 Aligned_cols=201 Identities=29% Similarity=0.401 Sum_probs=169.5
Q ss_pred CceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh--hhhcceeeEee-cCCCCCCC
Q 000913 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ--ETFARISGYCE-QNDIHSPF 955 (1226)
Q Consensus 879 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~-Q~~~~~~~ 955 (1226)
+.+.+|+|+||++++|++++|+|+|||||||||++|+|..+ +.+|+|.++|.+... ..+++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 44679999999999999999999999999999999999876 568999999976432 23456799997 55667788
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000913 956 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1035 (1226)
Q Consensus 956 lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPT 1035 (1226)
+|++|++.+...++. ...++..+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||
T Consensus 110 ~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIYD---LPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 999999988654432 233444556788999999988777764 569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 000913 1036 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1226)
Q Consensus 1036 sgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G 1091 (1226)
+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 999999999999999998764 899999999986 47788999999986 6777654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=321.17 Aligned_cols=193 Identities=29% Similarity=0.415 Sum_probs=161.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC------ccceEEEecCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (1226)
.+|+|+|+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 16 ~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (214)
T TIGR02673 16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLP 92 (214)
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhcc
Confidence 4999999999999999999999999999999999999988 999999999876542 2357999999988888
Q ss_pred CCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 000913 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1226)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1226)
.+||+||+.++....+... ......++.+++.+||++..++.+
T Consensus 93 ~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 135 (214)
T TIGR02673 93 DRTVYENVALPLEVRGKKE----------------------------------REIQRRVGAALRQVGLEHKADAFP--- 135 (214)
T ss_pred CCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh---
Confidence 9999999998754322100 001123567788999986656554
Q ss_pred ccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEc
Q 000913 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1226)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1226)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. .+ ++|+.++|+..++.+++|++++|+
T Consensus 136 --~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~tH~~~~~~~~~d~i~~l~ 211 (214)
T TIGR02673 136 --EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RG-TTVIVATHDLSLVDRVAHRVIILD 211 (214)
T ss_pred --hhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhcCEEEEec
Confidence 46999999999999999999999999999999999999999999998754 34 455557788889999999999999
Q ss_pred CCe
Q 000913 400 DGQ 402 (1226)
Q Consensus 400 ~G~ 402 (1226)
+|+
T Consensus 212 ~G~ 214 (214)
T TIGR02673 212 DGR 214 (214)
T ss_pred CCC
Confidence 985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=336.23 Aligned_cols=219 Identities=21% Similarity=0.301 Sum_probs=178.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++... .....+|+||||++++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 6 ~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEc
Confidence 588999998874210 001358999999999999999999999999999999999876 4689999999765
Q ss_pred C--------hhhhcceeeEeecCCCC-CCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCC
Q 000913 935 K--------QETFARISGYCEQNDIH-SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPG 1004 (1226)
Q Consensus 935 ~--------~~~~~~~~gyv~Q~~~~-~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~ 1004 (1226)
. ...+++.++|++|++.. ....||+||+.|..... ....++..+.++++++.++|. +..+..
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~----- 147 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS----- 147 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC-----
Confidence 2 12345679999999742 22369999998864322 123344456688899999994 566655
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEec
Q 000913 1005 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1226)
Q Consensus 1005 ~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~H~p~~~i~~~~D~v~ll~~ 1083 (1226)
+..||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++.+ .|+|||+++|+++ ++.+.+|++++|++
T Consensus 148 ~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~ 226 (289)
T PRK13645 148 PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE 226 (289)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999875 4899999999987 57889999999986
Q ss_pred CcEEEEeCCC
Q 000913 1084 GGQEIYVGPL 1093 (1226)
Q Consensus 1084 Gg~~~y~G~~ 1093 (1226)
|++++.|+.
T Consensus 227 -G~i~~~g~~ 235 (289)
T PRK13645 227 -GKVISIGSP 235 (289)
T ss_pred -CEEEEeCCH
Confidence 689988874
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=331.68 Aligned_cols=204 Identities=26% Similarity=0.366 Sum_probs=167.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC---ccceEEEecCCCC-CCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDN-HIGEM 241 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~l 241 (1226)
++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.+
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (271)
T PRK13632 23 NALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGA 99 (271)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcc
Confidence 4899999999999999999999999999999999999998 999999999876432 2467999999863 67789
Q ss_pred CHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 000913 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1226)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1226)
||+||+.++....+... ++....++.+++.+||++..++.+
T Consensus 100 tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 140 (271)
T PRK13632 100 TVEDDIAFGLENKKVPP----------------------------------KKMKDIIDDLAKKVGMEDYLDKEP----- 140 (271)
T ss_pred cHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCCc-----
Confidence 99999988653221100 001124567888999987766654
Q ss_pred CCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCC
Q 000913 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1226)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1226)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+++.|+++....+.|+|+ ++|+..++. .+|++++|++|
T Consensus 141 ~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii-~sH~~~~~~-~~d~v~~l~~G 218 (271)
T PRK13632 141 QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLIS-ITHDMDEAI-LADKVIVFSEG 218 (271)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE-EEechhHHh-hCCEEEEEECC
Confidence 4699999999999999999999999999999999999999999999876532345444 566666664 79999999999
Q ss_pred eEEEecChhHHH
Q 000913 402 QIVYQGPRELVL 413 (1226)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1226)
++++.|+.+++.
T Consensus 219 ~i~~~g~~~~~~ 230 (271)
T PRK13632 219 KLIAQGKPKEIL 230 (271)
T ss_pred EEEEecCHHHHh
Confidence 999999988764
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=325.27 Aligned_cols=212 Identities=26% Similarity=0.386 Sum_probs=179.9
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh
Q 000913 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1226)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1226)
+++|+++.++ .+.+|+|+|+++.+||+++|+||||||||||+++|+|..+ +..|+|.++|.++..
T Consensus 2 ~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~ 66 (237)
T TIGR00968 2 EIANISKRFG-------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATR 66 (237)
T ss_pred EEEEEEEEEC-------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCc
Confidence 5677777663 2469999999999999999999999999999999999876 468999999987643
Q ss_pred h-hhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 000913 937 E-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1015 (1226)
Q Consensus 937 ~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqr 1015 (1226)
. ..++.++|++|++.+++.+|+.||+.+....+. .......+.++++++.+++.+..++.. ..||+||+||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (237)
T TIGR00968 67 VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQR 138 (237)
T ss_pred CChhhcCEEEEecChhhccCCcHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHH
Confidence 2 234679999999988888999999987654331 223334466789999999987777653 5699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 000913 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1016 l~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
++||++|+.+|++++|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 215 (237)
T TIGR00968 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIGSP 215 (237)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999999999999998765 899999999986 47888999999985 789999875
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=334.54 Aligned_cols=217 Identities=24% Similarity=0.283 Sum_probs=180.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCce-EEEEEEEcCcc
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGNITISGYP 933 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~-~~G~i~i~g~~ 933 (1226)
.++++|+++.++. ..+.+|+|||++|++||++||+||||||||||+++|+|...+.. ..|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 4788999887741 12358999999999999999999999999999999999865311 13899999987
Q ss_pred CCh---hhhcceeeEeecCCC-CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 000913 934 KKQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1226)
Q Consensus 934 ~~~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LS 1009 (1226)
... ...++.+|||+|++. .++..||.||+.|....+ ..+.++.+++++++++.++|.+..+.. ++.||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSE-----PANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCC
Confidence 643 234567999999974 566789999998764322 234555567789999999998877766 45799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 000913 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1226)
Q Consensus 1010 gGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~ 1088 (1226)
||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++. + +.+|++++|++ |+++
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~-G~i~ 222 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDD-GKLL 222 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 8999999999874 4 57999999986 7899
Q ss_pred EeCCC
Q 000913 1089 YVGPL 1093 (1226)
Q Consensus 1089 y~G~~ 1093 (1226)
+.|+.
T Consensus 223 ~~g~~ 227 (282)
T PRK13640 223 AQGSP 227 (282)
T ss_pred EeCCH
Confidence 99975
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=328.22 Aligned_cols=205 Identities=33% Similarity=0.509 Sum_probs=170.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1226)
.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|
T Consensus 16 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (258)
T PRK13548 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFT 92 (258)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCC
Confidence 4999999999999999999999999999999999999988 9999999988754332 356999999988878899
Q ss_pred HHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 000913 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1226)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1226)
|+||+.++....+.. . ++....++.+++.+||++..++.+ .
T Consensus 93 v~e~l~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~ 133 (258)
T PRK13548 93 VEEVVAMGRAPHGLS-R---------------------------------AEDDALVAAALAQVDLAHLAGRDY-----P 133 (258)
T ss_pred HHHHHHhhhcccCCC-c---------------------------------HHHHHHHHHHHHHcCCHhHhcCCc-----c
Confidence 999998864221100 0 001123566788999987666654 4
Q ss_pred CCChhHhhHHHHHHHHh------cCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEE
Q 000913 323 GISGGQKKRVTTGEMMV------GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1226)
Q Consensus 323 ~LSGGqrqRvsia~al~------~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1226)
.|||||||||+||++|+ .+|++|+|||||+|||+.+...+.+.|+++.+..+ ++||.++|+..++.+++|+|+
T Consensus 134 ~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tiii~sH~~~~~~~~~d~i~ 212 (258)
T PRK13548 134 QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERG-LAVIVVLHDLNLAARYADRIV 212 (258)
T ss_pred cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEECCHHHHHHhcCEEE
Confidence 69999999999999999 59999999999999999999999999998763334 455557788889999999999
Q ss_pred EEcCCeEEEecChhHHH
Q 000913 397 LLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1226)
+|++|++++.|+.+++.
T Consensus 213 ~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 213 LLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEECCEEEeeCCHHHHh
Confidence 99999999999987764
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=330.50 Aligned_cols=215 Identities=22% Similarity=0.258 Sum_probs=176.3
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCC---ceEEEEEEEc
Q 000913 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 930 (1226)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~ 930 (1226)
..+.++|+++.++ .+.+|+|+||+|++||+++|+|||||||||||++|+|.... .+.+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3588999998874 24699999999999999999999999999999999997542 1368999999
Q ss_pred CccCC-----hhhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCc----ccccccC
Q 000913 931 GYPKK-----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVG 1001 (1226)
Q Consensus 931 g~~~~-----~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g 1001 (1226)
|.++. ...+++.++|++|++.+++ .||+||+.+.+..+. ... ..++.++++++.+++.. ..+..
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~-- 151 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YTG-DMDELVERSLRKAAVWDECKDKLNES-- 151 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---CcH-HHHHHHHHHHHHhCCcchhhhhhCCC--
Confidence 98753 2234567999999998887 499999998754332 111 23455778888888742 23332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 000913 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1226)
Q Consensus 1002 ~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll 1081 (1226)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++ ++|||+++|++. ++.+.||++++|
T Consensus 152 ---~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l 226 (269)
T PRK14259 152 ---GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFF 226 (269)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 457999999999999999999999999999999999999999999999854 799999999987 588899999999
Q ss_pred ec----------CcEEEEeCCC
Q 000913 1082 KR----------GGQEIYVGPL 1093 (1226)
Q Consensus 1082 ~~----------Gg~~~y~G~~ 1093 (1226)
++ +|++++.|+.
T Consensus 227 ~~~~~~~~~~g~~g~~~~~~~~ 248 (269)
T PRK14259 227 NAEEVEGGSGGKVGYLVEFNET 248 (269)
T ss_pred eccccccccccccceEEEeCCH
Confidence 86 3678888875
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=326.78 Aligned_cols=220 Identities=21% Similarity=0.278 Sum_probs=178.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCC--Cc-eEEEEEEEcC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGNITISG 931 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~~-~~~G~i~i~g 931 (1226)
.++++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 478899988774 2469999999999999999999999999999999999854 21 2579999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 000913 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1226)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 1006 (1226)
.++.. ..+++.++|++|++.+++.+|++||+.+...... ..+..+.++.++++++.+++.......... .+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 147 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLKS-NAM 147 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhC-CcC
Confidence 87532 2356679999999999999999999987643321 122333445678899999986421111111 246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 000913 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1226)
Q Consensus 1007 ~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~ 1086 (1226)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.||++++|.+ |+
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~ 224 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYM-GD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999975 689999999986 57789999999985 78
Q ss_pred EEEeCCC
Q 000913 1087 EIYVGPL 1093 (1226)
Q Consensus 1087 ~~y~G~~ 1093 (1226)
++..|+.
T Consensus 225 i~~~~~~ 231 (252)
T PRK14256 225 LVECGET 231 (252)
T ss_pred EEEeCCH
Confidence 9998874
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=338.32 Aligned_cols=223 Identities=16% Similarity=0.202 Sum_probs=179.4
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCC--ceEEEEEEEcCc
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYITGNITISGY 932 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~~~~G~i~i~g~ 932 (1226)
-|+++|+++.++.. .+...+|+||||+|++||++||+|+||||||||+++|+|.... .+..|+|.++|.
T Consensus 3 ~L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~ 73 (330)
T PRK15093 3 LLDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDI 73 (330)
T ss_pred eEEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCE
Confidence 36788998877532 1235799999999999999999999999999999999998642 246799999998
Q ss_pred cCCh---hh----hcceeeEeecCCC--CCCCCCHHHHHHHHHHhhcCCC---CCHHHHHHHHHHHHHHcCCCcc---cc
Q 000913 933 PKKQ---ET----FARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPE---VDSETRKMFIDEVMELVELNPL---RQ 997 (1226)
Q Consensus 933 ~~~~---~~----~~~~~gyv~Q~~~--~~~~lTv~E~l~f~~~lr~~~~---~~~~~~~~~v~~~l~~l~l~~~---~~ 997 (1226)
++.. .. .++.++||+|++. +.+.+||.+++.+......... ....+.++.+.++++.++|.+. .+
T Consensus 74 ~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~ 153 (330)
T PRK15093 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMR 153 (330)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHh
Confidence 7532 11 1246999999975 5788999999976422111000 1123445678899999999753 23
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcC
Q 000913 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFD 1076 (1226)
Q Consensus 998 ~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D 1076 (1226)
.. +..|||||||||+||+||+.+|+||||||||+|||+.++..|+++|+++.++ |.|||++|||++ .+.+.+|
T Consensus 154 ~~-----p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~d 227 (330)
T PRK15093 154 SF-----PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWAD 227 (330)
T ss_pred CC-----chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCC
Confidence 43 4579999999999999999999999999999999999999999999999864 999999999986 4778999
Q ss_pred eEEEEecCcEEEEeCCC
Q 000913 1077 ELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1077 ~v~ll~~Gg~~~y~G~~ 1093 (1226)
++++|.+ |++++.|+.
T Consensus 228 ri~vm~~-G~ive~g~~ 243 (330)
T PRK15093 228 KINVLYC-GQTVETAPS 243 (330)
T ss_pred EEEEEEC-CEEEEECCH
Confidence 9999985 799999975
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-36 Score=293.36 Aligned_cols=211 Identities=25% Similarity=0.381 Sum_probs=178.0
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
|+.++++..+... .+...||++|++.|++||.+||+|||||||||||-+|+|... +.+|+|.+.|++..
T Consensus 7 i~~~~l~ktvg~~---------~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L~ 75 (228)
T COG4181 7 IEVHHLSKTVGQG---------EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPLH 75 (228)
T ss_pred eehhhhhhhhcCC---------CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcchh
Confidence 4555665554322 345789999999999999999999999999999999999876 56899999999864
Q ss_pred h---h---h-hcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 000913 936 Q---E---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 1008 (1226)
Q Consensus 936 ~---~---~-~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~L 1008 (1226)
+ + . ..+.+|+|+|...+.|++|..||+.....++.... .+......+.++.+||.+-.+.+ +..|
T Consensus 76 ~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~---~~~~~~A~~lL~~vGLg~Rl~Hy-----P~qL 147 (228)
T COG4181 76 KLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESS---ADSRAGAKALLEAVGLGKRLTHY-----PAQL 147 (228)
T ss_pred hcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCcc---ccHHHHHHHHHHHhCcccccccC-----cccc
Confidence 3 1 1 34679999999999999999999999988876432 22334567889999998877766 3579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 000913 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1226)
Q Consensus 1009 SgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~ 1087 (1226)
||||+|||+||||++..|+|||.||||-+||..+...|.+++-.+. +.|.|.|++||||. +...|||.+-|.. |++
T Consensus 148 SGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~l 224 (228)
T COG4181 148 SGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GRL 224 (228)
T ss_pred CchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-cee
Confidence 9999999999999999999999999999999999999999999886 45999999999986 6788999999986 566
Q ss_pred E
Q 000913 1088 I 1088 (1226)
Q Consensus 1088 ~ 1088 (1226)
+
T Consensus 225 ~ 225 (228)
T COG4181 225 V 225 (228)
T ss_pred c
Confidence 5
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=330.47 Aligned_cols=204 Identities=23% Similarity=0.349 Sum_probs=166.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC-------ccceEEEecCCCC-C
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-------PQRTAAYISQHDN-H 237 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~-------~~~~~~yv~Q~d~-~ 237 (1226)
++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .
T Consensus 21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (280)
T PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQ 97 (280)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhhh
Confidence 4999999999999999999999999999999999999998 999999999875421 2356999999852 3
Q ss_pred CCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc-cccccc
Q 000913 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMV 316 (1226)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~v 316 (1226)
+...||+||+.|.....+... ++....++.+++.+||.. ..+..
T Consensus 98 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 142 (280)
T PRK13649 98 LFEETVLKDVAFGPQNFGVSQ----------------------------------EEAEALAREKLALVGISESLFEKN- 142 (280)
T ss_pred hccccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhhCC-
Confidence 345799999988653321100 001123466788899963 44443
Q ss_pred cccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEE
Q 000913 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1226)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1226)
++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.+ . +++||.++|+..++.+++|+++
T Consensus 143 ----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiiivsH~~~~~~~~~d~i~ 216 (280)
T PRK13649 143 ----PFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-S-GMTIVLVTHLMDDVANYADFVY 216 (280)
T ss_pred ----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeccHHHHHHhCCEEE
Confidence 456999999999999999999999999999999999999999999998754 3 4455557788888999999999
Q ss_pred EEcCCeEEEecChhHHH
Q 000913 397 LLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1226)
+|++|++++.|+++++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 217 VLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999988764
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=326.86 Aligned_cols=206 Identities=21% Similarity=0.301 Sum_probs=164.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CceeEEEEcCccCCCC-----CccceEEEecCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1226)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|+. ..+|+|.++|.++... ..++.++|++|++..+
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 100 (254)
T PRK14273 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF 100 (254)
T ss_pred eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccc
Confidence 38999999999999999999999999999999999998620 1289999999876421 1246799999988777
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc----ccccc
Q 000913 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD----VCADT 314 (1226)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (1226)
.+||+||+.|+....+.... .+....++.+++.+|+. +..++
T Consensus 101 -~~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~~~ 146 (254)
T PRK14273 101 -LMSIYDNISYGPKIHGTKDK---------------------------------KKLDEIVEQSLKKSALWNEVKDKLNT 146 (254)
T ss_pred -cCcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHhCCchhhHHHHhC
Confidence 49999999987543211000 00112345566777763 33444
Q ss_pred cccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCc
Q 000913 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1226)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1226)
.++.|||||||||+|||+|+.+|++|||||||+|||+.+...+++.|+++. .+ ++||.++|+..++.+++|+
T Consensus 147 -----~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tvii~sH~~~~~~~~~d~ 218 (254)
T PRK14273 147 -----NALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK--ES-YTIIIVTHNMQQAGRISDR 218 (254)
T ss_pred -----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh--cC-CEEEEEeCCHHHHHHhCCE
Confidence 345799999999999999999999999999999999999999999999874 24 4555578888899999999
Q ss_pred EEEEcCCeEEEecChhHHH
Q 000913 395 IILLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 395 iilL~~G~iv~~G~~~~~~ 413 (1226)
|++|++|+++..|+++++.
T Consensus 219 i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 219 TAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=331.83 Aligned_cols=205 Identities=26% Similarity=0.352 Sum_probs=168.7
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC----ccceEEEecCCCC-CCC
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV----PQRTAAYISQHDN-HIG 239 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~----~~~~~~yv~Q~d~-~~~ 239 (1226)
+.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++. .+.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 45999999999999999999999999999999999999998 999999999875422 2467999999863 344
Q ss_pred CCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 000913 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1226)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1226)
..||.||+.|+....+... .+....++++++.+||+...++.+
T Consensus 100 ~~~v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~--- 142 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIPP----------------------------------EEIRERVDESLKKVGMYEYRRHAP--- 142 (280)
T ss_pred cccHHHHHHhhHhhcCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhCCc---
Confidence 5799999998754322100 011224577899999988777655
Q ss_pred ccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEc
Q 000913 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1226)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1226)
..|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++.+..+.| |+.++|+..++.. +|++++|+
T Consensus 143 --~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~t-illvtH~~~~~~~-~d~v~~l~ 218 (280)
T PRK13633 143 --HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGIT-IILITHYMEEAVE-ADRIIVMD 218 (280)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEecChHHHhc-CCEEEEEE
Confidence 4699999999999999999999999999999999999999999999876533445 4556777777765 99999999
Q ss_pred CCeEEEecChhHHH
Q 000913 400 DGQIVYQGPRELVL 413 (1226)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1226)
+|+++++|+++++.
T Consensus 219 ~G~i~~~g~~~~~~ 232 (280)
T PRK13633 219 SGKVVMEGTPKEIF 232 (280)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999998875
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=330.70 Aligned_cols=205 Identities=25% Similarity=0.361 Sum_probs=170.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCC-CCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDN-HIGEM 241 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~-~~~~l 241 (1226)
.+|+|||+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++. .+...
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccc
Confidence 3999999999999999999999999999999999999998 9999999998754322 356999999863 34568
Q ss_pred CHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 000913 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1226)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1226)
||+||+.++....+... .+....++.+++.+||.+..++.+
T Consensus 95 tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 135 (277)
T PRK13652 95 TVEQDIAFGPINLGLDE----------------------------------ETVAHRVSSALHMLGLEELRDRVP----- 135 (277)
T ss_pred cHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhHhcCCc-----
Confidence 99999987654321100 011224567889999987776654
Q ss_pred CCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCC
Q 000913 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1226)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1226)
+.||||||||++||+||+.+|++|||||||+|||+.++..+.+.|+++... .+++|+.++|+..++.+.+|+|++|++|
T Consensus 136 ~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvli~tH~~~~~~~~~drv~~l~~G 214 (277)
T PRK13652 136 HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET-YGMTVIFSTHQLDLVPEMADYIYVMDKG 214 (277)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 469999999999999999999999999999999999999999999987653 2455566778888999999999999999
Q ss_pred eEEEecChhHHH
Q 000913 402 QIVYQGPRELVL 413 (1226)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1226)
++++.|+++++.
T Consensus 215 ~i~~~g~~~~~~ 226 (277)
T PRK13652 215 RIVAYGTVEEIF 226 (277)
T ss_pred eEEEECCHHHHh
Confidence 999999998874
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=326.98 Aligned_cols=220 Identities=22% Similarity=0.303 Sum_probs=172.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc----cceEEEecCCCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1226)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... +..++|++|++.+++.+
T Consensus 19 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (255)
T PRK11300 19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREM 95 (255)
T ss_pred EEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCC
Confidence 4999999999999999999999999999999999999998 9999999998765432 23589999999999999
Q ss_pred CHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 000913 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1226)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1226)
||+||+.++....... +...... .. + ..+ ....+....++.+++.+||++..+..+
T Consensus 96 tv~enl~~~~~~~~~~---~~~~~~~------~~-~--~~~-------~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 151 (255)
T PRK11300 96 TVIENLLVAQHQQLKT---GLFSGLL------KT-P--AFR-------RAESEALDRAATWLERVGLLEHANRQA----- 151 (255)
T ss_pred cHHHHHHHhhhccccc---hhhhhhc------cc-c--ccc-------cchhHHHHHHHHHHHhCChhhhhhCCh-----
Confidence 9999999864311000 0000000 00 0 000 000011234567788999987666544
Q ss_pred CCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCC
Q 000913 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1226)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1226)
+.|||||||||+||++|+.+|++|||||||+|||..+...+.+.|+++.+ ..+++||.++|+..++.+++|++++|++|
T Consensus 152 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRN-EHNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHh-hcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998765 32445566788889999999999999999
Q ss_pred eEEEecChhHHH
Q 000913 402 QIVYQGPRELVL 413 (1226)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1226)
++++.|+.+++.
T Consensus 231 ~i~~~~~~~~~~ 242 (255)
T PRK11300 231 TPLANGTPEEIR 242 (255)
T ss_pred eEEecCCHHHHh
Confidence 999999988763
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=329.43 Aligned_cols=215 Identities=23% Similarity=0.318 Sum_probs=172.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC---ccceEEEecCCCC-CCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDN-HIGEM 241 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~l 241 (1226)
.+|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. +++..
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS 99 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccc
Confidence 4899999999999999999999999999999999999998 999999999875432 2357999999864 68888
Q ss_pred CHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 000913 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1226)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1226)
||++|+.|.....+... .+....++.+++.+||.+..++. +
T Consensus 100 ~v~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~-----~ 140 (269)
T PRK13648 100 IVKYDVAFGLENHAVPY----------------------------------DEMHRRVSEALKQVDMLERADYE-----P 140 (269)
T ss_pred cHHHHHHhhHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCC-----c
Confidence 99999988754321100 00112356678899998766654 4
Q ss_pred CCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCC
Q 000913 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1226)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1226)
+.||||||||++||+|++.+|+++||||||+|||+.++..+.+.|+++....+.|+ +.++|+..++.. +|+|++|++|
T Consensus 141 ~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~ti-iivtH~~~~~~~-~d~i~~l~~G 218 (269)
T PRK13648 141 NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITI-ISITHDLSEAME-ADHVIVMNKG 218 (269)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE-EEEecCchHHhc-CCEEEEEECC
Confidence 56999999999999999999999999999999999999999999998754334454 446666677765 9999999999
Q ss_pred eEEEecChhHHHH---HHHhcCCCCC
Q 000913 402 QIVYQGPRELVLE---FFASMGFRCP 424 (1226)
Q Consensus 402 ~iv~~G~~~~~~~---~F~~~Gf~cp 424 (1226)
++++.|+++++.+ .+...|+++|
T Consensus 219 ~i~~~g~~~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK13648 219 TVYKEGTPTEIFDHAEELTRIGLDLP 244 (269)
T ss_pred EEEEecCHHHHhcCHHHHHhcCCCCC
Confidence 9999999887643 3344454444
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=330.99 Aligned_cols=203 Identities=27% Similarity=0.388 Sum_probs=168.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc----cceEEEecCCCC-CCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDN-HIGE 240 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~-~~~~ 240 (1226)
.+|+||||+|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++.
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (274)
T PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVG 92 (274)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhccc
Confidence 3999999999999999999999999999999999999998 9999999998764322 357999999864 4677
Q ss_pred CCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccc
Q 000913 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1226)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1226)
+||+||+.|+....+... .+....++.+++.+||++..++.+
T Consensus 93 ~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~---- 134 (274)
T PRK13644 93 RTVEEDLAFGPENLCLPP----------------------------------IEIRKRVDRALAEIGLEKYRHRSP---- 134 (274)
T ss_pred chHHHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCHHHhcCCc----
Confidence 899999998654321100 011123567788999987777654
Q ss_pred cCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcC
Q 000913 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1226)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1226)
..|||||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++.. .+ ++|+.++|+..++ ..+|+|++|++
T Consensus 135 -~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g-~til~~tH~~~~~-~~~d~v~~l~~ 210 (274)
T PRK13644 135 -KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KG-KTIVYITHNLEEL-HDADRIIVMDR 210 (274)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CC-CEEEEEecCHHHH-hhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999998754 34 4455567777777 56999999999
Q ss_pred CeEEEecChhHHH
Q 000913 401 GQIVYQGPRELVL 413 (1226)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1226)
|++++.|+.+++.
T Consensus 211 G~i~~~g~~~~~~ 223 (274)
T PRK13644 211 GKIVLEGEPENVL 223 (274)
T ss_pred CEEEEECCHHHHh
Confidence 9999999988764
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=324.11 Aligned_cols=210 Identities=23% Similarity=0.346 Sum_probs=170.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc----cceEEEecCCCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIGEM 241 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~l 241 (1226)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 16 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (242)
T TIGR03411 16 KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENL 92 (242)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCC
Confidence 4999999999999999999999999999999999999998 9999999988754432 24699999999999999
Q ss_pred CHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 000913 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1226)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1226)
||+||+.++..... ..+...... ...+....++.+++.+|+++..++.+
T Consensus 93 tv~~nl~~~~~~~~--~~~~~~~~~------------------------~~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (242)
T TIGR03411 93 TVFENLELALPRDK--SVFASLFFR------------------------LSAEEKDRIEEVLETIGLADEADRLA----- 141 (242)
T ss_pred CHHHHHHHhhhccc--ccccccccc------------------------cHHHHHHHHHHHHHHcCCchhhcCCh-----
Confidence 99999998643110 000000000 00011234677889999987666554
Q ss_pred CCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCC
Q 000913 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1226)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1226)
+.|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.. + .+||.++|+..++.+++|+|++|++|
T Consensus 142 ~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~g 218 (242)
T TIGR03411 142 GLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--K-HSVVVVEHDMEFVRSIADKVTVLHQG 218 (242)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--C-CEEEEEECCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998753 3 45555778888999999999999999
Q ss_pred eEEEecChhHH
Q 000913 402 QIVYQGPRELV 412 (1226)
Q Consensus 402 ~iv~~G~~~~~ 412 (1226)
+++++|+.+++
T Consensus 219 ~~~~~~~~~~~ 229 (242)
T TIGR03411 219 SVLAEGSLDQV 229 (242)
T ss_pred eEEeeCCHHHH
Confidence 99999998775
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=330.66 Aligned_cols=224 Identities=21% Similarity=0.257 Sum_probs=180.4
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.+..+... ...+.+.+|+|+|+++++|+++||+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~~~----~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 77 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGW----FRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPL 77 (267)
T ss_pred eEEEeceEEEecCCCCc----ccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 37889999887421100 00012469999999999999999999999999999999999876 5689999999876
Q ss_pred Ch---hhhcceeeEeecCCC--CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCC
Q 000913 935 KQ---ETFARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGL 1008 (1226)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~--~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~L 1008 (1226)
.. ...++.++|++|++. +.+.+|+.|++.+...... .....+..+.++++++.++|. ...+.. +..|
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~L 150 (267)
T PRK15112 78 HFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHML 150 (267)
T ss_pred CCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhc
Confidence 42 123456999999975 5677899999988654332 223344456788999999994 555554 3579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 000913 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1226)
Q Consensus 1009 SgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~ 1087 (1226)
||||||||+||++|+.+|+||+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.||++++|++ |++
T Consensus 151 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~-G~i 228 (267)
T PRK15112 151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQ-GEV 228 (267)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999764 899999999987 57778999999985 788
Q ss_pred EEeCCC
Q 000913 1088 IYVGPL 1093 (1226)
Q Consensus 1088 ~y~G~~ 1093 (1226)
++.|+.
T Consensus 229 ~~~~~~ 234 (267)
T PRK15112 229 VERGST 234 (267)
T ss_pred EecCCH
Confidence 888864
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=327.01 Aligned_cols=204 Identities=25% Similarity=0.349 Sum_probs=168.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCC----------------CccceEE
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF----------------VPQRTAA 229 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~----------------~~~~~~~ 229 (1226)
++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|+++|.++... ..++.++
T Consensus 19 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (257)
T PRK10619 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLT 95 (257)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhceE
Confidence 4999999999999999999999999999999999999988 99999999876421 1135799
Q ss_pred EecCCCCCCCCCCHHHHHHHHhH-hcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCC
Q 000913 230 YISQHDNHIGEMTVRETLAFSAR-CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (1226)
Q Consensus 230 yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL 308 (1226)
||+|++.+++.+||+||+.++.. ..+.. ..+....+..+++.+||
T Consensus 96 ~v~q~~~l~~~~sv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl 141 (257)
T PRK10619 96 MVFQHFNLWSHMTVLENVMEAPIQVLGLS----------------------------------KQEARERAVKYLAKVGI 141 (257)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHhCCCC----------------------------------HHHHHHHHHHHHHHcCC
Confidence 99999989999999999987541 11100 00011235667889999
Q ss_pred cccc-cccccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhh
Q 000913 309 DVCA-DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPE 387 (1226)
Q Consensus 309 ~~~~-dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~ 387 (1226)
.+.. +. .+..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.. . +.+|+.++|+..+
T Consensus 142 ~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tiiivsH~~~~ 214 (257)
T PRK10619 142 DERAQGK-----YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-E-GKTMVVVTHEMGF 214 (257)
T ss_pred ChhhhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHH
Confidence 7643 43 3457999999999999999999999999999999999999999999998754 3 4555567888889
Q ss_pred HHhhcCcEEEEcCCeEEEecChhHHH
Q 000913 388 TYDLFDDIILLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 388 ~~~~~D~iilL~~G~iv~~G~~~~~~ 413 (1226)
+..++|+|++|++|++++.|+++++.
T Consensus 215 ~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 215 ARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 99999999999999999999988763
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=319.67 Aligned_cols=191 Identities=25% Similarity=0.385 Sum_probs=163.3
Q ss_pred cccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh-------hhhcceeeEeecCCCCCCCCCH
Q 000913 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTI 958 (1226)
Q Consensus 886 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~~~~~lTv 958 (1226)
|||+++++ |+++|+||||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 9999999999999999999999876 468999999976531 1245679999999988889999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000913 959 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038 (1226)
Q Consensus 959 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgL 1038 (1226)
+||+.+..... .....++++.++++.+++.+..+.. +..||||||||++||++|+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998764321 2233445688899999998766665 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 000913 1039 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1226)
Q Consensus 1039 D~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G 1091 (1226)
|+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |+++..|
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999765 899999999986 47788999999986 6777654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=323.29 Aligned_cols=199 Identities=27% Similarity=0.391 Sum_probs=171.7
Q ss_pred EeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCChh-hhcceeeEeecCCCCCCCCCHHHH
Q 000913 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTIYES 961 (1226)
Q Consensus 883 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lTv~E~ 961 (1226)
+|+|+|++|++||+++|+|+||||||||+++|+|... +..|+|.++|.+.... ..++.++|++|++.+++.+|+.||
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 7999999999999999999999999999999999876 5689999999876431 234579999999998989999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000913 962 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041 (1226)
Q Consensus 962 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~ 1041 (1226)
+.+..... .....+..+.+.++++.++|.+..++.+ ..||||||||++||++|+.+|++++|||||+|||+.
T Consensus 92 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 92 IAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 98764332 1233444556788999999988777664 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 000913 1042 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1042 ~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
++..+.+.|++++.+ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 214 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKP 214 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999998764 999999999986 47788999999986 789988874
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=328.10 Aligned_cols=206 Identities=26% Similarity=0.342 Sum_probs=169.8
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc------cceEEEecCCC--C
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHD--N 236 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d--~ 236 (1226)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|+++|.++..... ++.++|++|++ .
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 100 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSA 100 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhhh
Confidence 46999999999999999999999999999999999999998 9999999998764322 35699999986 4
Q ss_pred CCCCCCHHHHHHHHhHhc-CCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-ccccc
Q 000913 237 HIGEMTVRETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADT 314 (1226)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 314 (1226)
+++.+||+||+.+..... ... ..+....++.+++.+||+ ...+.
T Consensus 101 ~~~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~~~~ 146 (265)
T TIGR02769 101 VNPRMTVRQIIGEPLRHLTSLD----------------------------------ESEQKARIAELLDMVGLRSEDADK 146 (265)
T ss_pred cCCCCCHHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCChhhhhC
Confidence 667899999998754211 000 000112356778899995 45554
Q ss_pred cccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCc
Q 000913 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1226)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1226)
. ++.|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++.+.. +++||.++|+...+.+++|+
T Consensus 147 ~-----~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tiiivsH~~~~~~~~~d~ 220 (265)
T TIGR02769 147 L-----PRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAF-GTAYLFITHDLRLVQSFCQR 220 (265)
T ss_pred C-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHHhcE
Confidence 4 45699999999999999999999999999999999999999999999876532 44556678888899999999
Q ss_pred EEEEcCCeEEEecChhHHH
Q 000913 395 IILLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 395 iilL~~G~iv~~G~~~~~~ 413 (1226)
+++|++|++++.|+++++.
T Consensus 221 i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 221 VAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEEeCCEEEEECCHHHHc
Confidence 9999999999999998764
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=327.17 Aligned_cols=219 Identities=19% Similarity=0.247 Sum_probs=176.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCC--c-eEEEEEEEcC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITISG 931 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~-~~~G~i~i~g 931 (1226)
.+.++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|...+ . +.+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 478999988763 24699999999999999999999999999999999997542 1 1479999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 000913 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1226)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 1006 (1226)
.++.. ...++.+||++|++.+++. ||+||+.|....+. ....++..++++++++.+++.+........ .+.
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~-~~~ 154 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLHT-QAL 154 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhhC-Ccc
Confidence 87631 2345679999999888775 99999988643321 112334455678899999985421111111 146
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 000913 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1226)
Q Consensus 1007 ~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~ 1086 (1226)
+||||||||++||++|+.+|+||+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.+|++++|++ |+
T Consensus 155 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 231 (259)
T PRK14274 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYM-GE 231 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 799999999987 57889999999985 79
Q ss_pred EEEeCCC
Q 000913 1087 EIYVGPL 1093 (1226)
Q Consensus 1087 ~~y~G~~ 1093 (1226)
++..|+.
T Consensus 232 i~~~g~~ 238 (259)
T PRK14274 232 LVECNDT 238 (259)
T ss_pred EEEECCH
Confidence 9999874
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=325.67 Aligned_cols=205 Identities=20% Similarity=0.307 Sum_probs=165.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CceeEEEEcCccCCCC-----CccceEEEecCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1226)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|.. ..+|+|.++|.++... ..++.++|++|++.++
T Consensus 26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 105 (258)
T PRK14268 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPF 105 (258)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccC
Confidence 49999999999999999999999999999999999987510 1289999999886432 1245799999988777
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc----ccccc
Q 000913 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD----VCADT 314 (1226)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (1226)
+ +||+||+.|+.+..+... + +....++.+++.+|+. +..++
T Consensus 106 ~-~tv~enl~~~~~~~~~~~--~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 150 (258)
T PRK14268 106 P-MSIYDNVAYGPRIHGANK--K--------------------------------DLDGVVENALRSAALWDETSDRLKS 150 (258)
T ss_pred c-ccHHHHHHHHHHHcCCCH--H--------------------------------HHHHHHHHHHHHcCCCcchhhhhcC
Confidence 7 899999998754322100 0 0112345677888874 22333
Q ss_pred cccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCc
Q 000913 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1226)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1226)
.+..|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++. .+ ++|+.++|+..++.+++|+
T Consensus 151 -----~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~--~~-~tiiivsH~~~~~~~~~d~ 222 (258)
T PRK14268 151 -----PALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK--KD-YTIVIVTHNMQQAARISDY 222 (258)
T ss_pred -----ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh--hC-CEEEEEECCHHHHHHhCCE
Confidence 345799999999999999999999999999999999999999999999874 24 4556678888899999999
Q ss_pred EEEEcCCeEEEecChhHHH
Q 000913 395 IILLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 395 iilL~~G~iv~~G~~~~~~ 413 (1226)
|++|++|++++.|+++++.
T Consensus 223 i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 223 TGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred EEEEECCEEEEeCCHHHHh
Confidence 9999999999999988763
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=364.93 Aligned_cols=256 Identities=23% Similarity=0.327 Sum_probs=195.1
Q ss_pred hHhhHHHHHHhhhccccChHHHHHHHHHHhhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhh
Q 000913 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1226)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1226)
.+++....+|+.++++.+++. . +....+.+...++++|+++.++.
T Consensus 284 ~~~~~~~~~ri~~~l~~~~~~-----~---~~~~~~~~~~~i~~~~v~~~y~~--------------------------- 328 (544)
T TIGR01842 284 FSGARQAYKRLNELLANYPSR-----D---PAMPLPEPEGHLSVENVTIVPPG--------------------------- 328 (544)
T ss_pred HHHHHHHHHHHHHHHhCCccc-----c---CCCCCCCCCCeEEEEEEEEEcCC---------------------------
Confidence 578888899998888765541 0 01112223457999999998742
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCC
Q 000913 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1226)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1226)
.++++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|+
T Consensus 329 -----~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~ 400 (544)
T TIGR01842 329 -----GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRETFGKHIGYLPQD 400 (544)
T ss_pred -----CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCHHHHhhheEEecCC
Confidence 1134899999999999999999999999999999999999998 9999999999876543 4689999998
Q ss_pred CCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 000913 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1226)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1226)
+.+++ .|++||+.+... ....+...++++.. ..+..++ .|++..||
T Consensus 401 ~~lf~-~ti~~Ni~~~~~----~~~~~~~~~~~~~~---------------------------~~~~~i~--~l~~gl~t 446 (544)
T TIGR01842 401 VELFP-GTVAENIARFGE----NADPEKIIEAAKLA---------------------------GVHELIL--RLPDGYDT 446 (544)
T ss_pred ccccc-ccHHHHHhccCC----CCCHHHHHHHHHHh---------------------------ChHHHHH--hCcccccc
Confidence 77665 599999985421 11112222221110 1122333 35667789
Q ss_pred cccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCc
Q 000913 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1226)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1226)
.+|+.+ ..||||||||++||||++++|++++|||||+|||+.++..+.+.|+++.. .++|+|++ +|... ..+.+|+
T Consensus 447 ~~~~~g-~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~i-th~~~-~~~~~d~ 522 (544)
T TIGR01842 447 VIGPGG-ATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVI-THRPS-LLGCVDK 522 (544)
T ss_pred ccCCCc-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEE-eCCHH-HHHhCCE
Confidence 998764 56999999999999999999999999999999999999999999987642 34566654 44443 5678999
Q ss_pred EEEEcCCeEEEecChhHHHH
Q 000913 395 IILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1226)
|++|++|++++.|+++++.+
T Consensus 523 i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 523 ILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred EEEEECCEEEeeCCHHHHhh
Confidence 99999999999999988753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=323.86 Aligned_cols=200 Identities=25% Similarity=0.393 Sum_probs=165.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC---ccceEEEecCCCCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGEMT 242 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (1226)
.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++ .|
T Consensus 17 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (241)
T PRK14250 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GT 92 (241)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hh
Confidence 4999999999999999999999999999999999999998 999999998875432 2457999999887776 69
Q ss_pred HHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-cccccccccccc
Q 000913 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMI 321 (1226)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~ 321 (1226)
|+||+.++....+ . ....++.+++.+||+ +..++ .+
T Consensus 93 v~e~l~~~~~~~~--~------------------------------------~~~~~~~~l~~~~l~~~~~~~-----~~ 129 (241)
T PRK14250 93 VKDNIEYGPMLKG--E------------------------------------KNVDVEYYLSIVGLNKEYATR-----DV 129 (241)
T ss_pred HHHHHhcchhhcC--c------------------------------------HHHHHHHHHHHcCCCHHHhhC-----Cc
Confidence 9999987542210 0 001245578888996 34443 34
Q ss_pred CCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCC
Q 000913 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1226)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1226)
..|||||||||+||+|++.+|+++||||||+|||+.+...+.+.|+++....+. +|+.++|+..++.+++|+|++|++|
T Consensus 130 ~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~-tii~~sH~~~~~~~~~d~i~~l~~G 208 (241)
T PRK14250 130 KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNL-TVIWITHNMEQAKRIGDYTAFLNKG 208 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCC-EEEEEeccHHHHHHhCCEEEEEeCC
Confidence 579999999999999999999999999999999999999999999987653344 5555788888999999999999999
Q ss_pred eEEEecChhHHH
Q 000913 402 QIVYQGPRELVL 413 (1226)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1226)
++++.|+++++.
T Consensus 209 ~i~~~~~~~~~~ 220 (241)
T PRK14250 209 ILVEYAKTYDFF 220 (241)
T ss_pred EEEEeCCHHHHh
Confidence 999999988763
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=325.97 Aligned_cols=215 Identities=26% Similarity=0.300 Sum_probs=175.3
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCC--C-ceEEEEEEEcC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 931 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-~~~~G~i~i~g 931 (1226)
.+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 478899988774 2469999999999999999999999999999999999732 1 12479999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCC
Q 000913 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1226)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 1002 (1226)
.++.. ..+++.++|++|++.+++ .||+||+.+....+. ....+..++.+.++++.+++.+ ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLHDS--- 145 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHhcC---
Confidence 87531 234567999999988877 899999988643321 1122334456788899998753 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 000913 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1226)
Q Consensus 1003 ~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~ 1082 (1226)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14239 146 --ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 699999999986 5788999999998
Q ss_pred cCcEEEEeCCC
Q 000913 1083 RGGQEIYVGPL 1093 (1226)
Q Consensus 1083 ~Gg~~~y~G~~ 1093 (1226)
+ |++++.|+.
T Consensus 222 ~-G~i~~~g~~ 231 (252)
T PRK14239 222 D-GDLIEYNDT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 6 689998874
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=325.45 Aligned_cols=215 Identities=21% Similarity=0.237 Sum_probs=176.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCc---eEEEEEEEcC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1226)
-+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 467888887763 246999999999999999999999999999999999975421 2579999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCC
Q 000913 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1226)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 1002 (1226)
.++.. ...++.++|++|++.+++ .|++||+.|....... ....+.+++++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGI--KDKKELDKIVEWALKKAALWDEVKDDLKKS--- 144 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87632 234567999999998887 8999999986543211 123344556788999998753 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 000913 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1226)
Q Consensus 1003 ~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~ 1082 (1226)
+..||+|||||++||++|+.+|+||+|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.+|++++|+
T Consensus 145 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~ 220 (251)
T PRK14270 145 --ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFL 220 (251)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEE
Confidence 467999999999999999999999999999999999999999999999876 699999999986 5788899999998
Q ss_pred cCcEEEEeCCC
Q 000913 1083 RGGQEIYVGPL 1093 (1226)
Q Consensus 1083 ~Gg~~~y~G~~ 1093 (1226)
+ |++++.|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14270 221 M-GDLIEFNKT 230 (251)
T ss_pred C-CeEEEeCCH
Confidence 6 789999875
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=324.18 Aligned_cols=211 Identities=21% Similarity=0.289 Sum_probs=176.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++. + ..||||++++|+++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-------------~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYHH-------------L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEECC-------------c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecC
Confidence 567888887741 1 238999999999999999999999999999999876 56899999998754
Q ss_pred hh-hhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 000913 936 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1226)
Q Consensus 936 ~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrq 1014 (1226)
.. ..++.++|++|++.+++.+|+.||+.+..... ... .+..+++++++++.+++.+..++.+ ..|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG--LKL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhcccccc--cCC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHH
Confidence 31 22456999999999999899999998753211 111 1234556899999999988777764 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 000913 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1015 rl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 214 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPT 214 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998754 899999999987 47788999999986 789999874
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=319.91 Aligned_cols=195 Identities=24% Similarity=0.335 Sum_probs=163.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC------ccceEEEecCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIG 239 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~~ 239 (1226)
.+|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (222)
T PRK10908 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLM 92 (222)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCccccc
Confidence 4999999999999999999999999999999999999988 999999999875432 1357999999988889
Q ss_pred CCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 000913 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1226)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1226)
.+||+||+.+.....+... ++....++.+++.+||.+..++.+
T Consensus 93 ~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 135 (222)
T PRK10908 93 DRTVYDNVAIPLIIAGASG----------------------------------DDIRRRVSAALDKVGLLDKAKNFP--- 135 (222)
T ss_pred cccHHHHHHhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCc---
Confidence 9999999998654322100 001123456788899987665543
Q ss_pred ccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEc
Q 000913 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1226)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1226)
..|||||||||+||++++.+|++|+|||||+|||+.+...+.+.|+++.+ . +++|+.++|+..++...+|+|++|+
T Consensus 136 --~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~ 211 (222)
T PRK10908 136 --IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-V-GVTVLMATHDIGLISRRSYRMLTLS 211 (222)
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999998754 3 4556667888899999999999999
Q ss_pred CCeEE
Q 000913 400 DGQIV 404 (1226)
Q Consensus 400 ~G~iv 404 (1226)
+|+++
T Consensus 212 ~G~i~ 216 (222)
T PRK10908 212 DGHLH 216 (222)
T ss_pred CCEEc
Confidence 99985
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=342.42 Aligned_cols=194 Identities=23% Similarity=0.376 Sum_probs=169.3
Q ss_pred cccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh-------hhhcceeeEeecCCCCCCCCCH
Q 000913 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTI 958 (1226)
Q Consensus 886 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~~~~~lTv 958 (1226)
|+|+++++||+++|+|||||||||||++|+|... +.+|+|.++|.+... ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 8999999999999999999999999999999876 468999999987532 1345679999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000913 959 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038 (1226)
Q Consensus 959 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgL 1038 (1226)
+||+.|+.... ...+.+++++++++.++|.+..++.+ ..|||||||||+||+||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999865321 12334556889999999988887764 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 000913 1039 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1039 D~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
|+.++..+++.|+++.++ |+|||++||+++ ++...+|++++|++ |++++.|+.
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPI 216 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999999765 899999999987 57888999999986 789999874
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=324.44 Aligned_cols=203 Identities=26% Similarity=0.341 Sum_probs=167.4
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCC------C---CccceEEEecCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE------F---VPQRTAAYISQHDN 236 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~------~---~~~~~~~yv~Q~d~ 236 (1226)
.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++.
T Consensus 16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 92 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN 92 (242)
T ss_pred eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCcc
Confidence 4999999999999999999999999999999999999988 9999999987631 1 11357999999998
Q ss_pred CCCCCCHHHHHHHH-hHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccc
Q 000913 237 HIGEMTVRETLAFS-ARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1226)
Q Consensus 237 ~~~~lTV~E~l~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1226)
+++.+||+||+.+. ....+... .+....++.+++.+||+...+..
T Consensus 93 ~~~~~tv~e~i~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~ 138 (242)
T PRK11124 93 LWPHLTVQQNLIEAPCRVLGLSK----------------------------------DQALARAEKLLERLRLKPYADRF 138 (242)
T ss_pred ccCCCcHHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCC
Confidence 99999999999753 22211100 00112356778899998766654
Q ss_pred ccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcE
Q 000913 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1226)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1226)
+ +.|||||||||+||++++.+|++++|||||+|||..+...+.+.|+++.. .+ ++|+.++|+..++.+++|++
T Consensus 139 ~-----~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~sh~~~~~~~~~d~i 211 (242)
T PRK11124 139 P-----LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TG-ITQVIVTHEVEVARKTASRV 211 (242)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhcCEE
Confidence 4 46999999999999999999999999999999999999999999998753 34 45556778888999999999
Q ss_pred EEEcCCeEEEecChhHH
Q 000913 396 ILLSDGQIVYQGPRELV 412 (1226)
Q Consensus 396 ilL~~G~iv~~G~~~~~ 412 (1226)
++|.+|++++.|+.+++
T Consensus 212 ~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 212 VYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEECCEEEEeCCHHHh
Confidence 99999999999988764
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=325.06 Aligned_cols=215 Identities=21% Similarity=0.290 Sum_probs=175.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCc---eEEEEEEEcC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1226)
.++++|+++.++ ++.+|+|+||+|++||+++|+|||||||||||++|+|..... +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 377889988773 235999999999999999999999999999999999965311 2579999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCC
Q 000913 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1226)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 1002 (1226)
.++.. ...++.++|++|++.+++ .|++||+.+....+.. ...++.++.++++++.+++.+ ..+..
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 143 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGI--KDKKKLDEIVEKSLKGAALWDEVKDRLKKS--- 143 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhHHHHhcC---
Confidence 87642 234567999999988877 8999999986543211 123344566888899988753 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 000913 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1226)
Q Consensus 1003 ~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~ 1082 (1226)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||+++|++. ++.+.+|++++|+
T Consensus 144 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~v~~l~ 219 (250)
T PRK14240 144 --ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQ-QASRISDKTAFFL 219 (250)
T ss_pred --CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHH-HHHhhCCEEEEEE
Confidence 45799999999999999999999999999999999999999999999985 4899999999986 4788899999998
Q ss_pred cCcEEEEeCCC
Q 000913 1083 RGGQEIYVGPL 1093 (1226)
Q Consensus 1083 ~Gg~~~y~G~~ 1093 (1226)
+ |+++..|+.
T Consensus 220 ~-G~i~~~~~~ 229 (250)
T PRK14240 220 N-GEIVEFGDT 229 (250)
T ss_pred C-CEEEEeCCH
Confidence 6 688888864
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=313.12 Aligned_cols=190 Identities=49% Similarity=0.849 Sum_probs=162.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCC--CCceEEEEEEEcCc
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGNITISGY 932 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~--~~~~~~G~i~i~g~ 932 (1226)
.++++|+++.++.... ...+.+|+|+|+++++|++++|+||||||||||+++|+|.. . +.+|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~~-------~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSPS-------KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCCC-------cccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 4788999988752100 01246999999999999999999999999999999999987 5 56899999998
Q ss_pred cCChhhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 000913 933 PKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1012 (1226)
Q Consensus 933 ~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGq 1012 (1226)
+......++.++|++|++.+++.+|++||+.+...++ .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 8765445677999999998888899999998642110 399999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 000913 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1226)
Q Consensus 1013 rqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G 1091 (1226)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++..++.+.+|++++|++ |++++.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999999999777999999999987567888999999986 6877654
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=334.12 Aligned_cols=255 Identities=24% Similarity=0.336 Sum_probs=200.3
Q ss_pred hhHHHHHHhhhccccChHHHHHHHHHHhhhcCCC-CCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhhc
Q 000913 80 ERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGID-LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRII 158 (1226)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 158 (1226)
+...-+|+.++..+...+ +.++.+...+. .-...|.|+|+++.+++
T Consensus 228 q~ltdme~mfdLl~~~~~-----v~d~pda~~L~~~~~g~v~F~~V~F~y~~---------------------------- 274 (497)
T COG5265 228 QALTDMEKMFDLLDVEAE-----VSDAPDAPPLWPVRLGAVAFINVSFAYDP---------------------------- 274 (497)
T ss_pred HhhhhHHHHHHhhccchh-----hccCCCCccccccccceEEEEEEEeeccc----------------------------
Confidence 344445555555555554 44555444443 33567999999999864
Q ss_pred CCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC---ccceEEEecCCC
Q 000913 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHD 235 (1226)
Q Consensus 159 ~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d 235 (1226)
.++||+++|+.+++|++++++||+|+||||++++|-++++++ +|.|+++|+++.+.. .++.||.|||+.
T Consensus 275 -----~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~---sG~I~id~qdir~vtq~slR~aIg~VPQDt 346 (497)
T COG5265 275 -----RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQSLRRAIGIVPQDT 346 (497)
T ss_pred -----cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc---CceEEEcchhHHHhHHHHHHHHhCcCcccc
Confidence 234999999999999999999999999999999999999999 999999999986654 357899999965
Q ss_pred CCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccc
Q 000913 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1226)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1226)
++| +.|+..|+.|+. +....+....+++..+.. .. +..|++.+||.
T Consensus 347 vLF-NDti~yni~ygr----~~at~eev~aaa~~aqi~---------------------------~f--i~~lP~gy~t~ 392 (497)
T COG5265 347 VLF-NDTIAYNIKYGR----PDATAEEVGAAAEAAQIH---------------------------DF--IQSLPEGYDTG 392 (497)
T ss_pred eeh-hhhHHHHHhccC----ccccHHHHHHHHHHhhhh---------------------------HH--HHhCchhhhcc
Confidence 555 569999999875 223333333222222111 11 33589999999
Q ss_pred ccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcE
Q 000913 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1226)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1226)
||+++.+ |||||||||+|||+++.+|+||++||.||+||+.|.+.|...|+..+ .++|+++.. |+..+.--+|.|
T Consensus 393 Vgerglk-lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~--~~rttlvia--hrlsti~~adei 467 (497)
T COG5265 393 VGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS--AGRTTLVIA--HRLSTIIDADEI 467 (497)
T ss_pred cchheee-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh--CCCeEEEEe--ehhhhccCCceE
Confidence 9999997 99999999999999999999999999999999999999999999876 345554433 466777789999
Q ss_pred EEEcCCeEEEecChhHHHH
Q 000913 396 ILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1226)
+||++|+|++.|++++++.
T Consensus 468 ivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 468 IVLDNGRIVERGTHEELLA 486 (497)
T ss_pred EEeeCCEEEecCcHHHHHH
Confidence 9999999999999999975
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=341.52 Aligned_cols=190 Identities=23% Similarity=0.379 Sum_probs=167.4
Q ss_pred cccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh-------hhhcceeeEeecCCCCCCCCCH
Q 000913 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTI 958 (1226)
Q Consensus 886 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~~~~~lTv 958 (1226)
|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... ...++.+|||+|+..+++.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 8999999999999999999999999999999876 568999999976532 2245679999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000913 959 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038 (1226)
Q Consensus 959 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgL 1038 (1226)
+||+.|+.. ...+++++++++.++|.+..++.+ ..|||||||||+|||+|+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999988532 112346889999999988877764 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 000913 1039 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1039 D~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
|+.++..+++.|+++.++ |+|||++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 213 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPL 213 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCH
Confidence 999999999999998765 899999999986 58889999999986 799999975
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=327.14 Aligned_cols=204 Identities=28% Similarity=0.398 Sum_probs=168.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCC--C---ccceEEEecCCCC-CCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF--V---PQRTAAYISQHDN-HIG 239 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~--~---~~~~~~yv~Q~d~-~~~ 239 (1226)
.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|+++|.++... . .++.++|++|++. .+.
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF 92 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhhc
Confidence 4999999999999999999999999999999999999998 99999999987421 1 2357999999853 345
Q ss_pred CCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 000913 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1226)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1226)
.+||+||+.|+....+.. . .+....+..+++.+||.+..++.+
T Consensus 93 ~~tv~e~i~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~L~~~~~~~~--- 135 (275)
T PRK13639 93 APTVEEDVAFGPLNLGLS-K---------------------------------EEVEKRVKEALKAVGMEGFENKPP--- 135 (275)
T ss_pred cccHHHHHHHHHHHcCCC-H---------------------------------HHHHHHHHHHHHHCCCchhhcCCh---
Confidence 679999998764221110 0 001123566888999987777654
Q ss_pred ccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEc
Q 000913 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1226)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1226)
+.||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++.+ . +++|+.++|+..++.+++|++++|+
T Consensus 136 --~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~-~~til~vtH~~~~~~~~~d~i~~l~ 211 (275)
T PRK13639 136 --HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-E-GITIIISTHDVDLVPVYADKVYVMS 211 (275)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999998764 3 4555667888889999999999999
Q ss_pred CCeEEEecChhHHH
Q 000913 400 DGQIVYQGPRELVL 413 (1226)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1226)
+|++++.|+++++.
T Consensus 212 ~G~i~~~g~~~~~~ 225 (275)
T PRK13639 212 DGKIIKEGTPKEVF 225 (275)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999998874
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=319.99 Aligned_cols=205 Identities=28% Similarity=0.338 Sum_probs=171.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC-ccceEEEecCCCCCCCCCCHH
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVR 244 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~ 244 (1226)
++|+|+|+.++||++++|+||||||||||+++|+|.++|+ +|+|+++|+++.... .++.++|++|++..++.+||+
T Consensus 14 ~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (232)
T cd03300 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVF 90 (232)
T ss_pred eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcHH
Confidence 4999999999999999999999999999999999999998 999999999876533 246799999998888899999
Q ss_pred HHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 000913 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1226)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1226)
||+.++....+... ......++.+++.+||++..++.+ ..|
T Consensus 91 ~nl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~l 131 (232)
T cd03300 91 ENIAFGLRLKKLPK----------------------------------AEIKERVAEALDLVQLEGYANRKP-----SQL 131 (232)
T ss_pred HHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCh-----hhC
Confidence 99988654322100 001123567888999987766554 469
Q ss_pred ChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEE
Q 000913 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1226)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1226)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++....+.|+ +.++|+..++.+++|++++|++|+++
T Consensus 132 S~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~ti-ii~sh~~~~~~~~~d~i~~l~~G~~~ 210 (232)
T cd03300 132 SGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITF-VFVTHDQEEALTMSDRIAVMNKGKIQ 210 (232)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEE-EEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998765334454 44677778899999999999999999
Q ss_pred EecChhHHH
Q 000913 405 YQGPRELVL 413 (1226)
Q Consensus 405 ~~G~~~~~~ 413 (1226)
+.|+.+++.
T Consensus 211 ~~~~~~~~~ 219 (232)
T cd03300 211 QIGTPEEIY 219 (232)
T ss_pred ecCCHHHHH
Confidence 999887663
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=320.13 Aligned_cols=197 Identities=27% Similarity=0.332 Sum_probs=162.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-------cceEEEecCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-------QRTAAYISQHDNHI 238 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~~ 238 (1226)
.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~ 100 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLI 100 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccC
Confidence 5999999999999999999999999999999999999998 9999999998765432 24699999998889
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 000913 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1226)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1226)
+.+||+||+.+.....+.. . .+....++.+++.+||.+..+..+
T Consensus 101 ~~~tv~~~l~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 144 (228)
T PRK10584 101 PTLNALENVELPALLRGES-S---------------------------------RQSRNGAKALLEQLGLGKRLDHLP-- 144 (228)
T ss_pred CCcCHHHHHHHHHHhcCCC-H---------------------------------HHHHHHHHHHHHHcCCHhHhhCCh--
Confidence 9999999998865332110 0 001123567788999987666554
Q ss_pred cccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEE
Q 000913 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1226)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1226)
..||||||||++||++|+.+|++++|||||+|||+.+...+.+.|++++...+.| |+.++|+..++ +.+|++++|
T Consensus 145 ---~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~sH~~~~~-~~~d~i~~l 219 (228)
T PRK10584 145 ---AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTT-LILVTHDLQLA-ARCDRRLRL 219 (228)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCE-EEEEecCHHHH-HhCCEEEEE
Confidence 4699999999999999999999999999999999999999999999876533444 44466776666 559999999
Q ss_pred cCCeEEEe
Q 000913 399 SDGQIVYQ 406 (1226)
Q Consensus 399 ~~G~iv~~ 406 (1226)
++|++++.
T Consensus 220 ~~g~i~~~ 227 (228)
T PRK10584 220 VNGQLQEE 227 (228)
T ss_pred ECCEEEec
Confidence 99999753
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=327.61 Aligned_cols=204 Identities=27% Similarity=0.373 Sum_probs=167.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCC--C---CccceEEEecCCCC-CCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE--F---VPQRTAAYISQHDN-HIG 239 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~--~---~~~~~~~yv~Q~d~-~~~ 239 (1226)
.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. . ..++.++||+|++. .++
T Consensus 15 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (271)
T PRK13638 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIF 91 (271)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhccc
Confidence 3899999999999999999999999999999999999998 9999999998742 1 11357999999864 345
Q ss_pred CCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 000913 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1226)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1226)
..|+.||+.+.....+... .+....++.+++.+||++..++.+
T Consensus 92 ~~~~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 134 (271)
T PRK13638 92 YTDIDSDIAFSLRNLGVPE----------------------------------AEITRRVDEALTLVDAQHFRHQPI--- 134 (271)
T ss_pred cccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhcCCc---
Confidence 6789999988643321100 001123466788899987666554
Q ss_pred ccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEc
Q 000913 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1226)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1226)
..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++.. .+ ++||.++|+..++.+++|++++|+
T Consensus 135 --~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g-~tii~vtH~~~~~~~~~d~i~~l~ 210 (271)
T PRK13638 135 --QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QG-NHVIISSHDIDLIYEISDAVYVLR 210 (271)
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999998764 34 455667888889999999999999
Q ss_pred CCeEEEecChhHHH
Q 000913 400 DGQIVYQGPRELVL 413 (1226)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1226)
+|++++.|+.+++.
T Consensus 211 ~G~i~~~g~~~~~~ 224 (271)
T PRK13638 211 QGQILTHGAPGEVF 224 (271)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999988764
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=329.83 Aligned_cols=207 Identities=26% Similarity=0.342 Sum_probs=168.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC---ccceEEEecCCCC-CCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDN-HIGEM 241 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~l 241 (1226)
++|+|||++|++|++++|+||||||||||+++|+|.++|+...+|+|+++|.++.... .++.++||+|++. .++.+
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 100 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGA 100 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccC
Confidence 4899999999999999999999999999999999999887112399999999876432 2357999999864 67789
Q ss_pred CHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 000913 242 TVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1226)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1226)
||+||+.|..+..+.. .++....++.+++.+||++..++. +
T Consensus 101 tv~enl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~L~~~~~~~-----~ 141 (282)
T PRK13640 101 TVGDDVAFGLENRAVP----------------------------------RPEMIKIVRDVLADVGMLDYIDSE-----P 141 (282)
T ss_pred CHHHHHHhhHHhCCCC----------------------------------HHHHHHHHHHHHHHCCChhHhcCC-----c
Confidence 9999998865332110 001122456778899998766654 4
Q ss_pred CCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCC
Q 000913 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1226)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1226)
+.|||||||||+||+||+.+|++|+|||||+|||..++..+.+.|+++....+.| |+.++|+..++ ..+|++++|++|
T Consensus 142 ~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~t-vli~tH~~~~~-~~~d~i~~l~~G 219 (282)
T PRK13640 142 ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLT-VISITHDIDEA-NMADQVLVLDDG 219 (282)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEecCHHHH-HhCCEEEEEECC
Confidence 5799999999999999999999999999999999999999999999876533445 44466676776 579999999999
Q ss_pred eEEEecChhHHH
Q 000913 402 QIVYQGPRELVL 413 (1226)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1226)
++++.|+++++.
T Consensus 220 ~i~~~g~~~~~~ 231 (282)
T PRK13640 220 KLLAQGSPVEIF 231 (282)
T ss_pred EEEEeCCHHHHh
Confidence 999999998874
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=325.25 Aligned_cols=218 Identities=18% Similarity=0.243 Sum_probs=174.2
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCC--c-eEEEEEEEcCcc
Q 000913 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITISGYP 933 (1226)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~-~~~G~i~i~g~~ 933 (1226)
+++|+++.++ .+.+|+|+||++++||+++|+|+||||||||+++|+|.... . +.+|+|.++|.+
T Consensus 7 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~ 73 (251)
T PRK14244 7 SVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGID 73 (251)
T ss_pred EeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEe
Confidence 4677777663 24699999999999999999999999999999999997541 1 358999999987
Q ss_pred CCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 000913 934 KKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 1008 (1226)
Q Consensus 934 ~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~L 1008 (1226)
+.. ..+++.++|++|++.+++. ||+||+.+....+.. .......++.++++++.+++.+........ .+..|
T Consensus 74 i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~L 150 (251)
T PRK14244 74 VYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGL-AKNKKKLDEIVEKSLTSVGLWEELGDRLKD-SAFEL 150 (251)
T ss_pred hHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHcCCCchhhhHhhc-ChhhC
Confidence 532 1345679999999887775 999999886433311 112233445678899999986522111111 14579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 000913 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1226)
Q Consensus 1009 SgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~ 1088 (1226)
|||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++. +|+|||+++|++. ++.+.+|++++|++ |+++
T Consensus 151 S~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~ 227 (251)
T PRK14244 151 SGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRIV 227 (251)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEEE
Confidence 9999999999999999999999999999999999999999999985 4899999999987 57788999999986 6899
Q ss_pred EeCCC
Q 000913 1089 YVGPL 1093 (1226)
Q Consensus 1089 y~G~~ 1093 (1226)
+.|+.
T Consensus 228 ~~~~~ 232 (251)
T PRK14244 228 EYNTT 232 (251)
T ss_pred EeCCH
Confidence 88874
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=324.58 Aligned_cols=218 Identities=23% Similarity=0.317 Sum_probs=176.0
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCc---eEEEEEEEcCc
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISGY 932 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g~ 932 (1226)
++++|+++.++ ++.+|+|+||++++||+++|+|+|||||||||++|+|...+. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 4 IEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred EEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 67888888763 246899999999999999999999999999999999975421 25899999998
Q ss_pred cCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 000913 933 PKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 1007 (1226)
Q Consensus 933 ~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~ 1007 (1226)
++.. ...++.++|++|++.+++ .|++||+.+...... ....+..++.++++++.+++.+..+..... .+.+
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~ 146 (250)
T PRK14262 71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELNK-PGTR 146 (250)
T ss_pred EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHhC-Chhh
Confidence 7532 234567999999998887 899999988653321 112233445678889999886421111111 1467
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 000913 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1226)
Q Consensus 1008 LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~ 1087 (1226)
||||||||++||++|+.+|+||+|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.+|++++|++ |++
T Consensus 147 LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~-G~i 223 (250)
T PRK14262 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR-GEL 223 (250)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999865 799999999986 47888999999986 688
Q ss_pred EEeCCC
Q 000913 1088 IYVGPL 1093 (1226)
Q Consensus 1088 ~y~G~~ 1093 (1226)
+..|+.
T Consensus 224 ~~~g~~ 229 (250)
T PRK14262 224 IEYGPT 229 (250)
T ss_pred EEecCH
Confidence 888874
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=323.88 Aligned_cols=212 Identities=24% Similarity=0.288 Sum_probs=168.4
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCCC---ccceEEEecCCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIGE 240 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~ 240 (1226)
.+|+|+|+.|++|++++|+||||||||||+++|+|.++|. ...+|+|.++|.++.... .++.++|++|++.+++.
T Consensus 17 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~ 96 (250)
T PRK14247 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPN 96 (250)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCC
Confidence 4999999999999999999999999999999999998741 012899999999875432 23579999999888999
Q ss_pred CCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccc
Q 000913 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1226)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1226)
+||+||+.++.+..+..... .+....++.+++.+||.+..+.. -+..
T Consensus 97 ~tv~enl~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~-~~~~ 143 (250)
T PRK14247 97 LSIFENVALGLKLNRLVKSK--------------------------------KELQERVRWALEKAQLWDEVKDR-LDAP 143 (250)
T ss_pred CcHHHHHHHHHHhccccCCH--------------------------------HHHHHHHHHHHHHcCCCcchhhh-hcCC
Confidence 99999999875432110000 00112356678888885421111 1234
Q ss_pred cCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcC
Q 000913 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1226)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1226)
+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++. .+ ++|+.++|+..++.+++|+|++|++
T Consensus 144 ~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~~-~tiii~sH~~~~~~~~~d~i~~l~~ 220 (250)
T PRK14247 144 AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK--KD-MTIVLVTHFPQQAARISDYVAFLYK 220 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cC-CEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 55799999999999999999999999999999999999999999999874 24 4566677888889999999999999
Q ss_pred CeEEEecChhHHH
Q 000913 401 GQIVYQGPRELVL 413 (1226)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1226)
|++++.|+.+++.
T Consensus 221 G~i~~~g~~~~~~ 233 (250)
T PRK14247 221 GQIVEWGPTREVF 233 (250)
T ss_pred CeEEEECCHHHHH
Confidence 9999999988764
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=334.42 Aligned_cols=210 Identities=20% Similarity=0.290 Sum_probs=168.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCC-----CccceEEEecCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1226)
.+|+|+|+.|++|++++|+|||||||||||++|+|..++. ...+|+|.++|+++... ..++.++||+|++.++
T Consensus 96 ~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~ 175 (329)
T PRK14257 96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF 175 (329)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccC
Confidence 4999999999999999999999999999999999998631 01289999999998532 2356799999988766
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 000913 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1226)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1226)
..||+||+.|+....+... .+ .....+..+++.++|.+..++.++.
T Consensus 176 -~~ti~eNi~~~~~~~~~~~-~~--------------------------------~~~~~~~~~l~~~~L~~~l~~~~~~ 221 (329)
T PRK14257 176 -EMSIFDNVAYGPRNNGIND-RK--------------------------------ILEKIVEKSLKSAALWDEVKDDLDK 221 (329)
T ss_pred -CCcHHHHHHhHHHhcCCCh-HH--------------------------------HHHHHHHHHHHHcCCcchhhhhhhC
Confidence 5899999998754321100 00 0111234556777776555566654
Q ss_pred cccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEE
Q 000913 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1226)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1226)
....|||||||||+||||++.+|+||+|||||+|||+.+...+.++|+++.+ + .+|+.++|....+.+.+|+|++|
T Consensus 222 -~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~-~Tii~iTH~l~~i~~~~Driivl 297 (329)
T PRK14257 222 -AGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--K-YSIIIVTHSMAQAQRISDETVFF 297 (329)
T ss_pred -CcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 4557999999999999999999999999999999999999999999998753 3 45666788888889999999999
Q ss_pred cCCeEEEecChhHHH
Q 000913 399 SDGQIVYQGPRELVL 413 (1226)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1226)
++|++++.|+++++.
T Consensus 298 ~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 298 YQGWIEEAGETKTIF 312 (329)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999999874
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=323.45 Aligned_cols=212 Identities=26% Similarity=0.333 Sum_probs=168.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCceeEEEEcCccCCCCCc----cceEEEecCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--DPTLKVSGTVTYNGHDMDEFVP----QRTAAYISQHDNHIG 239 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~~~~G~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~ 239 (1226)
.+|+|+|+.|++|++++|+|||||||||||++|+|.+ +|+ +|+|.++|.++..... +..++|++|++.+++
T Consensus 14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (243)
T TIGR01978 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDERARAGLFLAFQYPEEIP 90 (243)
T ss_pred EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHHhhccceEeeeccccccC
Confidence 4999999999999999999999999999999999995 566 9999999998765432 234899999999999
Q ss_pred CCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc-cccccccc
Q 000913 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMVGD 318 (1226)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~ 318 (1226)
.+|++|++.+.......... . ... ...+....++.+++.+||+. ..++.++
T Consensus 91 ~~t~~~~~~~~~~~~~~~~~----------~--------~~~---------~~~~~~~~~~~~l~~~~l~~~~~~~~~~- 142 (243)
T TIGR01978 91 GVSNLEFLRSALNARRSARG----------E--------EPL---------DLLDFLKLLKAKLALLGMDEEFLNRSVN- 142 (243)
T ss_pred CcCHHHHHHHHHHHhhcccc----------c--------ccc---------cHHHHHHHHHHHHHHcCCchhhcccccc-
Confidence 99999999886532110000 0 000 00011234577889999973 4554432
Q ss_pred cccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhh-cCcEEE
Q 000913 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL-FDDIIL 397 (1226)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~-~D~iil 397 (1226)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. .+ ++||.++|+..++... +|++++
T Consensus 143 ---~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tvi~vsH~~~~~~~~~~d~i~~ 217 (243)
T TIGR01978 143 ---EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PD-RSFLIITHYQRLLNYIKPDYVHV 217 (243)
T ss_pred ---cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CC-cEEEEEEecHHHHHhhcCCeEEE
Confidence 14999999999999999999999999999999999999999999998754 34 4555577788888888 899999
Q ss_pred EcCCeEEEecChhHHH
Q 000913 398 LSDGQIVYQGPRELVL 413 (1226)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1226)
|++|++++.|+++++.
T Consensus 218 l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 218 LLDGRIVKSGDVELAK 233 (243)
T ss_pred EeCCEEEEecCHHHhc
Confidence 9999999999988653
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=325.77 Aligned_cols=216 Identities=21% Similarity=0.286 Sum_probs=177.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCc-e--EEEEEEEcC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-Y--ITGNITISG 931 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~--~~G~i~i~g 931 (1226)
.++++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|..+.. + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 478899988774 246999999999999999999999999999999999976532 2 479999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCC
Q 000913 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1226)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 1002 (1226)
.++.. ..+++.++|++|++.+++ .||+||+.+....+. ..+..+.++.+.++++.+++.+ ..+..
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKS--- 147 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC---
Confidence 87532 234567999999998887 899999988654332 1223334456788899998843 33332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 000913 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1226)
Q Consensus 1003 ~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~ 1082 (1226)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.+|++++|+
T Consensus 148 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~ 223 (259)
T PRK14260 148 --ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFS 223 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEe
Confidence 467999999999999999999999999999999999999999999999865 699999999997 5888999999998
Q ss_pred c----CcEEEEeCCC
Q 000913 1083 R----GGQEIYVGPL 1093 (1226)
Q Consensus 1083 ~----Gg~~~y~G~~ 1093 (1226)
. .|++++.|+.
T Consensus 224 ~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 224 TDESRIGQMVEFGVT 238 (259)
T ss_pred ccCCCCceEEEeCCH
Confidence 4 4899999975
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=319.09 Aligned_cols=211 Identities=23% Similarity=0.336 Sum_probs=176.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.+... .+.+.+|+|+||++++|+++||+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGHG---------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccCC---------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhH
Confidence 5678888776311 012579999999999999999999999999999999999876 56899999998753
Q ss_pred h------hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 000913 936 Q------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1226)
Q Consensus 936 ~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LS 1009 (1226)
. ...++.++|++|++.+++.+|+.||+.+...... ....++..+.+.++++.++|.+..+.. +..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCC
Confidence 2 1345679999999988888999999998654321 123444556789999999998777765 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 000913 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1226)
Q Consensus 1010 gGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~ 1087 (1226)
+|||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+ +|+|||+++|+++ +.+.+|++++|++ |++
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMED-GKL 219 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999876 5899999999985 4689999999986 443
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=361.20 Aligned_cols=211 Identities=25% Similarity=0.369 Sum_probs=177.6
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000913 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1226)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1226)
..++++||+|.|+. ++.+|+|+|++|+||+.+||+|+||||||||+++|+|... +.+|+|.+||.+
T Consensus 472 ~~I~~~~vsf~y~~------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~--p~~G~I~idg~~ 537 (708)
T TIGR01193 472 GDIVINDVSYSYGY------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ--ARSGEILLNGFS 537 (708)
T ss_pred CcEEEEEEEEEcCC------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCCcEEEECCEE
Confidence 46999999999852 2358999999999999999999999999999999999877 568999999987
Q ss_pred CC---hhhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 000913 934 KK---QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLP 1003 (1226)
Q Consensus 934 ~~---~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~g~~ 1003 (1226)
+. ...+++.+|||+|++.+++. |++||+.++. .++.+. +.++++++..++.+.. |+.+|..
T Consensus 538 i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~----~~~~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e~ 608 (708)
T TIGR01193 538 LKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGA----KENVSQ----DEIWAACEIAEIKDDIENMPLGYQTELSEE 608 (708)
T ss_pred HHHcCHHHHHHheEEEecCceehhH-HHHHHHhccC----CCCCCH----HHHHHHHHHhCCHHHHHhcccccCcEecCC
Confidence 64 34677889999999988764 9999998752 112232 3467777777775533 4556554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 000913 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1226)
Q Consensus 1004 ~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~ 1083 (1226)
..+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++ +|+|+|+++|+++ ..+.+|++++|++
T Consensus 609 -G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~ 683 (708)
T TIGR01193 609 -GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDH 683 (708)
T ss_pred -CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEEC
Confidence 4679999999999999999999999999999999999999999999985 4899999999986 5678999999986
Q ss_pred CcEEEEeCCC
Q 000913 1084 GGQEIYVGPL 1093 (1226)
Q Consensus 1084 Gg~~~y~G~~ 1093 (1226)
|+++..|+.
T Consensus 684 -G~i~~~G~~ 692 (708)
T TIGR01193 684 -GKIIEQGSH 692 (708)
T ss_pred -CEEEEECCH
Confidence 799999974
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=329.91 Aligned_cols=216 Identities=24% Similarity=0.303 Sum_probs=180.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++.. ....+|+|||+++++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEKE----------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCCC----------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEC
Confidence 47889999887421 12358999999999999999999999999999999999876 5689999999876
Q ss_pred Ch---hhhcceeeEeecCCC-CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 000913 935 KQ---ETFARISGYCEQNDI-HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1226)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSg 1010 (1226)
.. ...++.+||++|++. .++..||.||+.+..... ....++..++++++++.++|.+..++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCH
Confidence 43 234667999999974 566789999998764322 123444456788999999998877765 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 000913 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1226)
Q Consensus 1011 Gqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y 1089 (1226)
|||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++ |+|||+++|+++. + ..+|++++|++ |+++.
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~~-G~i~~ 220 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMKA-GEIIK 220 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 9999999999874 4 46999999986 68888
Q ss_pred eCCC
Q 000913 1090 VGPL 1093 (1226)
Q Consensus 1090 ~G~~ 1093 (1226)
.|+.
T Consensus 221 ~g~~ 224 (277)
T PRK13642 221 EAAP 224 (277)
T ss_pred eCCH
Confidence 8874
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=345.12 Aligned_cols=213 Identities=26% Similarity=0.419 Sum_probs=181.3
Q ss_pred CCceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcC
Q 000913 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (1226)
Q Consensus 852 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g 931 (1226)
++..++.+|++|.++. .+++++|+|+++++|+.+||+|+||||||||+++|+|..+ +.+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~~------------g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYPD------------GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecCC------------CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECC
Confidence 4556777799998863 2379999999999999999999999999999999999987 4689999999
Q ss_pred ccC---ChhhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCccccc------ccCC
Q 000913 932 YPK---KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS------LVGL 1002 (1226)
Q Consensus 932 ~~~---~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~------~~g~ 1002 (1226)
.+. +...+++.++||+|++.+++ -|++||+.++. .+.+ ++.+.++++..+|.++.+. .+|.
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~-----~~~s----~e~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR-----PDAS----DEEIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC-----CcCC----HHHHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 875 44678899999999998876 59999999852 1222 3447888898888876654 3343
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 000913 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1226)
Q Consensus 1003 ~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~ 1082 (1226)
+.++|||||+|||++||||+.+++++++||||++||.++.+.|++.|.++++ ++|||++||++. ....+|+|++|+
T Consensus 453 -~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vld 528 (559)
T COG4988 453 -GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVLD 528 (559)
T ss_pred -CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEec
Confidence 4578999999999999999999999999999999999999999999999986 599999999975 567789999998
Q ss_pred cCcEEEEeCCC
Q 000913 1083 RGGQEIYVGPL 1093 (1226)
Q Consensus 1083 ~Gg~~~y~G~~ 1093 (1226)
+ |+++..|..
T Consensus 529 ~-G~l~~~g~~ 538 (559)
T COG4988 529 N-GRLVEQGTH 538 (559)
T ss_pred C-CceeccCCH
Confidence 6 789998874
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=325.26 Aligned_cols=221 Identities=20% Similarity=0.261 Sum_probs=178.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCc---eEEEEEEEcC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1226)
.++++|+++.+. ...+|+|+||++++|+++||+|+||||||||+++|+|...+. ...|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 488999998874 235899999999999999999999999999999999986531 1369999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 000913 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1226)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 1006 (1226)
.++.. ...++.++|++|++.+++ .|++||+.+....... .+..+..+.+.++++.+++.+..+...+. .+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGW--RPKLEIDDIVESALKDADLWDEIKHKIHK-SAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchhhhHhcC-Ccc
Confidence 87521 234567999999988887 8999999886433211 12233445688899999986432222222 245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecC-
Q 000913 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG- 1084 (1226)
Q Consensus 1007 ~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~H~p~~~i~~~~D~v~ll~~G- 1084 (1226)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++. +|+|||+++|++. ++.+.+|++++|++|
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 7999999999999999999999999999999999999999999999864 4899999999987 588899999999864
Q ss_pred ---cEEEEeCCC
Q 000913 1085 ---GQEIYVGPL 1093 (1226)
Q Consensus 1085 ---g~~~y~G~~ 1093 (1226)
|++++.|+.
T Consensus 229 ~~~G~i~~~~~~ 240 (261)
T PRK14258 229 NRIGQLVEFGLT 240 (261)
T ss_pred CcCceEEEeCCH
Confidence 799999875
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=318.34 Aligned_cols=196 Identities=26% Similarity=0.341 Sum_probs=166.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCCCHHH
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1226)
++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .+.++|++|++.+++.+||+|
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~ 89 (223)
T TIGR03740 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARE 89 (223)
T ss_pred EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHHH
Confidence 4999999999999999999999999999999999999998 999999998765322 357999999988899999999
Q ss_pred HHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 000913 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1226)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1226)
|+.+.....+.. ...+..+++.+||++..|..+ ..||
T Consensus 90 ~~~~~~~~~~~~--------------------------------------~~~~~~~l~~~~l~~~~~~~~-----~~LS 126 (223)
T TIGR03740 90 NLKVHTTLLGLP--------------------------------------DSRIDEVLNIVDLTNTGKKKA-----KQFS 126 (223)
T ss_pred HHHHHHHHcCCC--------------------------------------HHHHHHHHHHcCCcHHHhhhH-----hhCC
Confidence 998765332100 012455678899987666544 4699
Q ss_pred hhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEEE
Q 000913 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1226)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~ 405 (1226)
||||||++||+|++.+|++++|||||+|||+.+...+.+.|+++.. .+.| |+.++|+..++.+.+|+|++|++|++++
T Consensus 127 ~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~t-iii~sH~~~~~~~~~d~i~~l~~g~i~~ 204 (223)
T TIGR03740 127 LGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGIT-VILSSHILSEVQQLADHIGIISEGVLGY 204 (223)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCE-EEEEcCCHHHHHHhcCEEEEEeCCEEEE
Confidence 9999999999999999999999999999999999999999998754 3444 5556777888999999999999999999
Q ss_pred ecChh
Q 000913 406 QGPRE 410 (1226)
Q Consensus 406 ~G~~~ 410 (1226)
.|++.
T Consensus 205 ~~~~~ 209 (223)
T TIGR03740 205 QGKIN 209 (223)
T ss_pred ecChh
Confidence 99865
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=374.76 Aligned_cols=257 Identities=24% Similarity=0.378 Sum_probs=197.0
Q ss_pred hHhhHHHHHHhhhccccChHHHHHHHHHHhhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhh
Q 000913 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1226)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1226)
.++++..++|+.++++.+++. +..+....+.....++|+||++.++.
T Consensus 421 ~~~~~~~~~ri~~~l~~~~e~------~~~~~~~~~~~~~~i~~~~vsf~y~~--------------------------- 467 (694)
T TIGR01846 421 FQQTGIALERLGDILNSPTEP------RSAGLAALPELRGAITFENIRFRYAP--------------------------- 467 (694)
T ss_pred HHHHHHHHHHHHHHHcCCCCc------cCCCCCCCCCCCCeEEEEEEEEEcCC---------------------------
Confidence 568888899999888776651 00011111222457999999999842
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCC
Q 000913 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1226)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1226)
..+.+|+|+|+.++||+.++|+|+||||||||+++|+|.++|+ +|+|++||++++++.. ++.++||+|+
T Consensus 468 -----~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~~~~r~~i~~v~q~ 539 (694)
T TIGR01846 468 -----DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADPAWLRRQMGVVLQE 539 (694)
T ss_pred -----CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCHHHHHHhCeEEccC
Confidence 1124899999999999999999999999999999999999998 9999999999887654 4689999997
Q ss_pred CCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 000913 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1226)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1226)
+.++ +.|++|||.++. +....+.+.++++... .++.+ ..|+...||
T Consensus 540 ~~lf-~~ti~eNi~~~~----~~~~~~~i~~a~~~~~---------------------------l~~~i--~~lp~gl~t 585 (694)
T TIGR01846 540 NVLF-SRSIRDNIALCN----PGAPFEHVIHAAKLAG---------------------------AHDFI--SELPQGYNT 585 (694)
T ss_pred Ceeh-hhhHHHHHhcCC----CCCCHHHHHHHHHHcC---------------------------hHHHH--HhCcCccCc
Confidence 6555 579999998753 1112222222222110 11122 246778899
Q ss_pred cccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCc
Q 000913 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1226)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1226)
.+|+.+ .+||||||||++|||||+++|++++|||||++||+.++..+.+.|++.. .+.|+|+ ++|.. +....+|+
T Consensus 586 ~i~~~g-~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~-itH~~-~~~~~~d~ 660 (694)
T TIGR01846 586 EVGEKG-ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVII-IAHRL-STVRACDR 660 (694)
T ss_pred EecCCC-CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEE-EeCCh-HHHHhCCE
Confidence 999865 5799999999999999999999999999999999999999999998863 3456555 45544 45567999
Q ss_pred EEEEcCCeEEEecChhHHHH
Q 000913 395 IILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1226)
|++|++|+++++|+++++.+
T Consensus 661 ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 661 IIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred EEEEeCCEEEEeCCHHHHHH
Confidence 99999999999999998864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=316.69 Aligned_cols=195 Identities=24% Similarity=0.366 Sum_probs=162.7
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-cceEEEecCCCCCCCCCCHHHHHH
Q 000913 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRETLA 248 (1226)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1226)
|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 999999999999999999999999999999999998 9999999998755432 357999999998899999999998
Q ss_pred HHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhH
Q 000913 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1226)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1226)
++..... ... . +....++.+++.+||++..++.+ ..|||||
T Consensus 93 ~~~~~~~-~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 133 (211)
T cd03298 93 LGLSPGL-KLT-----A----------------------------EDRQAIEVALARVGLAGLEKRLP-----GELSGGE 133 (211)
T ss_pred ccccccc-Ccc-----H----------------------------HHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHH
Confidence 7642110 000 0 01123567888999987666554 4699999
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEEEec
Q 000913 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407 (1226)
Q Consensus 329 rqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G 407 (1226)
|||++||++++.+|++++|||||+|||..++..+.+.|+++.... +.+|+.++|+..++.+++|++++|++|++++.|
T Consensus 134 ~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAET-KMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999999999999876433 445555788889999999999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=323.31 Aligned_cols=219 Identities=22% Similarity=0.245 Sum_probs=175.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCc---eEEEEEEEcC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1226)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 467888887763 246999999999999999999999999999999999976521 3579999999
Q ss_pred ccCC----hhhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 000913 932 YPKK----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 1007 (1226)
Q Consensus 932 ~~~~----~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~ 1007 (1226)
.++. ....++.++|++|++.+++ .||.||+.+...... ....+..++.+.++++.+++.+........ .+..
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~ 145 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLKS-HAFG 145 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhhc-Cccc
Confidence 8753 1234567999999998887 899999987643221 112233445678888888875321111111 1457
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 000913 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1226)
Q Consensus 1008 LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~ 1087 (1226)
|||||||||+||++|+.+|+||+|||||+|||+.++..+++.|+++.+ ++|||+++|++. ++.+.+|++++|++ |++
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~-G~i 222 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM-GEL 222 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999875 699999999987 57888999999986 789
Q ss_pred EEeCCC
Q 000913 1088 IYVGPL 1093 (1226)
Q Consensus 1088 ~y~G~~ 1093 (1226)
+..|+.
T Consensus 223 ~~~g~~ 228 (249)
T PRK14253 223 VEHDDT 228 (249)
T ss_pred EEeCCH
Confidence 998874
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=358.40 Aligned_cols=210 Identities=26% Similarity=0.388 Sum_probs=177.3
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000913 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1226)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1226)
..++++||+|+|+. .++.+|+|+|++|+|||.+||+|+||||||||+++|+|... +.+|+|.+||.+
T Consensus 476 ~~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~ 542 (710)
T TIGR03796 476 GYVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ--PWSGEILFDGIP 542 (710)
T ss_pred CeEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEe
Confidence 46999999999863 12468999999999999999999999999999999999876 568999999988
Q ss_pred CCh---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 000913 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLP 1003 (1226)
Q Consensus 934 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~g~~ 1003 (1226)
+.+ ..+++.+|||+|++.++. .|++||+.++. ++.+. +.++++++..++.+.. |+.+|..
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~-----~~~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD-----PTIPD----ADLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC-----CCCCH----HHHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 643 457889999999998875 59999998641 12232 3467788888876543 4455544
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 000913 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1226)
Q Consensus 1004 ~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~ 1083 (1226)
..+||||||||++|||||+++|+||+||||||+||+.++..+++.|++ .++|+|+++|+++ ....+|++++|++
T Consensus 613 -G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~ 686 (710)
T TIGR03796 613 -GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLER 686 (710)
T ss_pred -CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 468999999999999999999999999999999999999999999986 4899999999986 4677999999986
Q ss_pred CcEEEEeCCC
Q 000913 1084 GGQEIYVGPL 1093 (1226)
Q Consensus 1084 Gg~~~y~G~~ 1093 (1226)
|+++..|+.
T Consensus 687 -G~i~~~G~~ 695 (710)
T TIGR03796 687 -GKVVQRGTH 695 (710)
T ss_pred -CEEEEecCH
Confidence 799999974
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=339.02 Aligned_cols=212 Identities=27% Similarity=0.427 Sum_probs=178.1
Q ss_pred CCceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcC
Q 000913 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (1226)
Q Consensus 852 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g 931 (1226)
.+..++|+||+++|. +++++|+++||+|++||.+||+|+|||||||++++|.+... .+|+|.|||
T Consensus 348 ~~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG 412 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDG 412 (591)
T ss_pred CCCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECC
Confidence 345699999999986 23459999999999999999999999999999999998765 589999999
Q ss_pred ccCCh---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccC
Q 000913 932 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVG 1001 (1226)
Q Consensus 932 ~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~g 1001 (1226)
.++++ +.+|+.+||||||..++. -||.+|+.|+. ++.+.+ .|-++.+..++.+.- ++.+|
T Consensus 413 ~dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn-----~sas~e----eV~e~~k~a~~hd~i~~l~~GY~T~VG 482 (591)
T KOG0057|consen 413 QDIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGN-----PSASDE----EVVEACKRAGLHDVISRLPDGYQTLVG 482 (591)
T ss_pred eeHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCC-----CCcCHH----HHHHHHHHcCcHHHHHhccccchhhHh
Confidence 98654 568899999999988775 59999999863 334443 355666666665433 34566
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 000913 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1226)
Q Consensus 1002 ~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll 1081 (1226)
..| ..|||||||||+||||++.+|+|+++|||||.||.++...+++.+++. ..|+|+|++.|+.+ ..+.||+|++|
T Consensus 483 erG-~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l~--ll~~~DkI~~l 558 (591)
T KOG0057|consen 483 ERG-LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRLD--LLKDFDKIIVL 558 (591)
T ss_pred hcc-cccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecch--hHhcCCEEEEE
Confidence 654 569999999999999999999999999999999999999999999994 45899999999874 68899999999
Q ss_pred ecCcEEEEeCCC
Q 000913 1082 KRGGQEIYVGPL 1093 (1226)
Q Consensus 1082 ~~Gg~~~y~G~~ 1093 (1226)
++ |++...|+-
T Consensus 559 ~n-G~v~e~gth 569 (591)
T KOG0057|consen 559 DN-GTVKEYGTH 569 (591)
T ss_pred EC-CeeEEeccH
Confidence 97 678888874
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=326.54 Aligned_cols=217 Identities=22% Similarity=0.253 Sum_probs=178.2
Q ss_pred CceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCC---ceEEEEEEE
Q 000913 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITI 929 (1226)
Q Consensus 853 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i 929 (1226)
...++++|+++.+. ++.+|+|+||+|++||+++|+|+||||||||+++|+|.... .+.+|+|.+
T Consensus 23 ~~~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i 89 (272)
T PRK14236 23 QTALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRL 89 (272)
T ss_pred CcEEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEE
Confidence 34689999998874 23689999999999999999999999999999999998642 136899999
Q ss_pred cCccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCc----cccccc
Q 000913 930 SGYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLV 1000 (1226)
Q Consensus 930 ~g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~ 1000 (1226)
+|.+... ..+++.++|++|++.+++. |++||+.+...... ....+..++.++++++.+++.+ ..+..
T Consensus 90 ~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 165 (272)
T PRK14236 90 DGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLHEN- 165 (272)
T ss_pred CCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhhCC-
Confidence 9987642 2346679999999888875 99999988653321 1122233456888999998864 22332
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEE
Q 000913 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1080 (1226)
Q Consensus 1001 g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~l 1080 (1226)
+..||||||||++|||+|+.+|+||+|||||+|||+.++..+++.|+++++ +.|||+++|+++ ++.+.+|++++
T Consensus 166 ----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~ 239 (272)
T PRK14236 166 ----AFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAF 239 (272)
T ss_pred ----cccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEE
Confidence 457999999999999999999999999999999999999999999999975 799999999986 47788999999
Q ss_pred EecCcEEEEeCCC
Q 000913 1081 MKRGGQEIYVGPL 1093 (1226)
Q Consensus 1081 l~~Gg~~~y~G~~ 1093 (1226)
|++ |++++.|+.
T Consensus 240 l~~-G~i~~~g~~ 251 (272)
T PRK14236 240 MYM-GKLVEYGDT 251 (272)
T ss_pred EEC-CEEEecCCH
Confidence 986 789998874
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=330.86 Aligned_cols=205 Identities=20% Similarity=0.294 Sum_probs=166.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCC----C----CccceEEEecCCCC-
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE----F----VPQRTAAYISQHDN- 236 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~----~----~~~~~~~yv~Q~d~- 236 (1226)
.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++.
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~ 101 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY 101 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcch
Confidence 4999999999999999999999999999999999999998 9999999987642 1 12357999999863
Q ss_pred CCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-cccccc
Q 000913 237 HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTM 315 (1226)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1226)
.+...||+||+.|+....+.. . ++....++.+++.++|+ ...++.
T Consensus 102 ~~~~~tv~enl~~~~~~~~~~-~---------------------------------~~~~~~~~~ll~~~~L~~~~~~~~ 147 (289)
T PRK13645 102 QLFQETIEKDIAFGPVNLGEN-K---------------------------------QEAYKKVPELLKLVQLPEDYVKRS 147 (289)
T ss_pred hhhhhHHHHHHHHHHHHcCCC-H---------------------------------HHHHHHHHHHHHHcCCChhHhcCC
Confidence 233469999999865322110 0 00112345678889995 455544
Q ss_pred ccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcE
Q 000913 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1226)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1226)
+..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+.. +++||.++|+..++.+++|+|
T Consensus 148 -----~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiiiisH~~~~~~~~~d~i 221 (289)
T PRK13645 148 -----PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEY-KKRIIMVTHNMDQVLRIADEV 221 (289)
T ss_pred -----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEE
Confidence 45699999999999999999999999999999999999999999999876533 445555788888999999999
Q ss_pred EEEcCCeEEEecChhHHH
Q 000913 396 ILLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1226)
++|++|++++.|+.+++.
T Consensus 222 ~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 222 IVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=357.64 Aligned_cols=218 Identities=26% Similarity=0.330 Sum_probs=183.9
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|++++++ ++.+|+|+||++.+|+++||+|||||||||||++|+|... +.+|+|.++|.+..
T Consensus 5 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 69 (501)
T PRK10762 5 LQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEVT 69 (501)
T ss_pred EEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 78889988773 2469999999999999999999999999999999999876 45899999998753
Q ss_pred h----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 000913 936 Q----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS-PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1226)
Q Consensus 936 ~----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSg 1010 (1226)
. ...++.++|++|++.+++.+||+|++.|+...+.. ...+..+.++++.++++.++|.+..+..+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 144 (501)
T PRK10762 70 FNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELSI 144 (501)
T ss_pred CCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCH
Confidence 2 11245699999999888999999999886432210 11223344566889999999988777764 46999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 000913 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1226)
Q Consensus 1011 Gqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~ 1090 (1226)
||||||+||++|+.+|++|||||||+|||+.++..+++.|+++.++|.|||+++|++. ++.+.||++++|++ |+++..
T Consensus 145 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~~ 222 (501)
T PRK10762 145 GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIAE 222 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999986 57789999999986 789999
Q ss_pred CCCCc
Q 000913 1091 GPLGR 1095 (1226)
Q Consensus 1091 G~~~~ 1095 (1226)
|+...
T Consensus 223 ~~~~~ 227 (501)
T PRK10762 223 REVAD 227 (501)
T ss_pred cCcCc
Confidence 88653
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=323.41 Aligned_cols=212 Identities=21% Similarity=0.303 Sum_probs=167.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCC--CCC---ccceEEEecCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMD--EFV---PQRTAAYISQHDNHI 238 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~I~~nG~~~~--~~~---~~~~~~yv~Q~d~~~ 238 (1226)
++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ ...+|+|+++|+++. ... .++.++|++|++.++
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (253)
T PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPF 97 (253)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccC
Confidence 4999999999999999999999999999999999998762 013899999999875 221 235799999999899
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 000913 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1226)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1226)
+.+||+||+.++....+..... ++....++.+++.+||....... -+
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~-~~ 144 (253)
T PRK14267 98 PHLTIYDNVAIGVKLNGLVKSK--------------------------------KELDERVEWALKKAALWDEVKDR-LN 144 (253)
T ss_pred CCCcHHHHHHHHHHhcCccCCH--------------------------------HHHHHHHHHHHHHcCCccchhhh-hc
Confidence 9999999999865432110000 00112345667788874311111 12
Q ss_pred cccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEE
Q 000913 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1226)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1226)
..+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ + .+||.++|+..++..++|+|++|
T Consensus 145 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~d~i~~l 221 (253)
T PRK14267 145 DYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--E-YTIVLVTHSPAQAARVSDYVAFL 221 (253)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--C-CEEEEEECCHHHHHhhCCEEEEE
Confidence 34567999999999999999999999999999999999999999999998753 3 45556778888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000913 399 SDGQIVYQGPRELVL 413 (1226)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1226)
++|++++.|+++++.
T Consensus 222 ~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 222 YLGKLIEVGPTRKVF 236 (253)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988764
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=326.48 Aligned_cols=209 Identities=24% Similarity=0.372 Sum_probs=170.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1226)
++|+|+||.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|+..+++.+|
T Consensus 25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 101 (265)
T PRK10575 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMT 101 (265)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCcc
Confidence 4999999999999999999999999999999999999988 9999999988654322 357999999888889999
Q ss_pred HHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 000913 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1226)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1226)
|.||+.++.... .... .. . .......++.+++.+||++..++.++
T Consensus 102 v~e~l~~~~~~~-~~~~--------------~~-~--------------~~~~~~~~~~~l~~~~l~~~~~~~~~----- 146 (265)
T PRK10575 102 VRELVAIGRYPW-HGAL--------------GR-F--------------GAADREKVEEAISLVGLKPLAHRLVD----- 146 (265)
T ss_pred HHHHHHhCcccc-cccc--------------cC-C--------------CHHHHHHHHHHHHHcCCHHHhcCCcc-----
Confidence 999998753110 0000 00 0 00011235678889999876666554
Q ss_pred CCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCe
Q 000913 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1226)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1226)
.|||||||||+||++|+.+|++|||||||+|||..++..+.+.|++++...+ ++|+.++|+..++.+++|+|++|++|+
T Consensus 147 ~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~-~tiii~sH~~~~i~~~~d~i~~l~~G~ 225 (265)
T PRK10575 147 SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERG-LTVIAVLHDINMAARYCDYLVALRGGE 225 (265)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 6999999999999999999999999999999999999999999998765334 445557788889999999999999999
Q ss_pred EEEecChhHHH
Q 000913 403 IVYQGPRELVL 413 (1226)
Q Consensus 403 iv~~G~~~~~~ 413 (1226)
+++.|+.+++.
T Consensus 226 i~~~~~~~~~~ 236 (265)
T PRK10575 226 MIAQGTPAELM 236 (265)
T ss_pred EEEecCHHHhc
Confidence 99999887653
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=326.34 Aligned_cols=208 Identities=24% Similarity=0.396 Sum_probs=170.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1226)
.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+|
T Consensus 21 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 97 (265)
T PRK10253 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDIT 97 (265)
T ss_pred EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCc
Confidence 4999999999999999999999999999999999999988 9999999998754332 356999999988888999
Q ss_pred HHHHHHHHhHhc-CCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccccc
Q 000913 243 VRETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI 321 (1226)
Q Consensus 243 V~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1226)
|+||+.++..-. ...... .+.....++.+++.+||++..++. +
T Consensus 98 v~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~l~~~~l~~~~~~~-----~ 141 (265)
T PRK10253 98 VQELVARGRYPHQPLFTRW-------------------------------RKEDEEAVTKAMQATGITHLADQS-----V 141 (265)
T ss_pred HHHHHHhCcccccccccCC-------------------------------CHHHHHHHHHHHHHcCCHHHhcCC-----c
Confidence 999998753100 000000 000112356788899998766654 4
Q ss_pred CCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCC
Q 000913 322 RGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1226)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G 401 (1226)
+.||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.... +++||.++|+..++.+++|+|++|++|
T Consensus 142 ~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G 220 (265)
T PRK10253 142 DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREK-GYTLAAVLHDLNQACRYASHLIALREG 220 (265)
T ss_pred ccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 5699999999999999999999999999999999999999999999876533 445566778888999999999999999
Q ss_pred eEEEecChhHHH
Q 000913 402 QIVYQGPRELVL 413 (1226)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1226)
++++.|+++++.
T Consensus 221 ~i~~~g~~~~~~ 232 (265)
T PRK10253 221 KIVAQGAPKEIV 232 (265)
T ss_pred EEEEeCCHHHHh
Confidence 999999988764
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=322.80 Aligned_cols=207 Identities=22% Similarity=0.315 Sum_probs=164.4
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-----CCCCceeEEEEcCccCCCC-----CccceEEEecCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-----~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (1226)
.+|+|+|+.|++|++++|+|||||||||||++|+|.++ |+ +|+|.++|+++... ..++.++|++|++
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 96 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARV---EGEILLDGENIYDPHVDVVELRRRVGMVFQKP 96 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCC---ceEEEECCEEccccccCHHHHhhcEEEEecCC
Confidence 49999999999999999999999999999999999864 34 89999999887532 1145799999998
Q ss_pred CCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccc
Q 000913 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1226)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1226)
.+++ .||+||+.|+....+.... + .....++.+++.+||.+...+.
T Consensus 97 ~~~~-~tv~enl~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~~~~~ 142 (253)
T PRK14242 97 NPFP-KSIFENVAYGLRVNGVKDK-A--------------------------------YLAERVERSLRHAALWDEVKDR 142 (253)
T ss_pred CCCc-CcHHHHHHHHHHHcCCCCH-H--------------------------------HHHHHHHHHHHHcCCchhhhHH
Confidence 7777 5999999987543221100 0 0012345567777875422122
Q ss_pred ccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcE
Q 000913 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1226)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1226)
. ++.++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .+ .+|+.++|+..++.+++|+|
T Consensus 143 ~-~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~-~tvii~tH~~~~~~~~~d~v 218 (253)
T PRK14242 143 L-HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK--AR-YTIIIVTHNMQQAARVSDVT 218 (253)
T ss_pred h-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--cC-CeEEEEEecHHHHHHhCCEE
Confidence 2 23456799999999999999999999999999999999999999999999873 24 45555778888999999999
Q ss_pred EEEcCCeEEEecChhHHH
Q 000913 396 ILLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1226)
++|++|++++.|+++++.
T Consensus 219 ~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 219 AFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988763
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=293.47 Aligned_cols=206 Identities=27% Similarity=0.411 Sum_probs=176.8
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCCCHH
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1226)
..+|+|||+.|.+||.++++||||||||||||+++|+.+|. .|+|.+||.+++. |...-|.|+|++.++|.+||.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~g--PgaergvVFQ~~~LlPWl~~~ 92 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEG--PGAERGVVFQNEALLPWLNVI 92 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccC--CCccceeEeccCccchhhHHH
Confidence 44899999999999999999999999999999999999998 9999999998764 334568999999999999999
Q ss_pred HHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 000913 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1226)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1226)
+|++|+.++.|.+.. .+ ..++.+.+...||++..+.. +-+|
T Consensus 93 dNvafgL~l~Gi~k~-------~R---------------------------~~~a~q~l~~VgL~~~~~~~-----i~qL 133 (259)
T COG4525 93 DNVAFGLQLRGIEKA-------QR---------------------------REIAHQMLALVGLEGAEHKY-----IWQL 133 (259)
T ss_pred HHHHHHHHhcCCCHH-------HH---------------------------HHHHHHHHHHhCcccccccc-----eEee
Confidence 999999999886421 11 23456778899999776644 4569
Q ss_pred ChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEc--CCe
Q 000913 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS--DGQ 402 (1226)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~--~G~ 402 (1226)
||||||||.|||||..+|+.|+||||+.+||.-|+.++.+.|-++.+..++. ++.++|+..|+.-++++++||+ .|+
T Consensus 134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~-~lliTH~ieEAlflatrLvvlsp~pgR 212 (259)
T COG4525 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQ-VLLITHDIEEALFLATRLVVLSPGPGR 212 (259)
T ss_pred cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCe-EEEEeccHHHHHhhhheeEEecCCCce
Confidence 9999999999999999999999999999999999999999998887755544 5558899999999999999998 589
Q ss_pred EEEecChhHHHHH
Q 000913 403 IVYQGPRELVLEF 415 (1226)
Q Consensus 403 iv~~G~~~~~~~~ 415 (1226)
|+..=+.+-...|
T Consensus 213 vv~~~~~df~rR~ 225 (259)
T COG4525 213 VVERLPLDFARRY 225 (259)
T ss_pred eeEecCCCHHHHh
Confidence 9987776644433
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=364.98 Aligned_cols=256 Identities=21% Similarity=0.302 Sum_probs=193.7
Q ss_pred hHhhHHHHHHhhhccccChHHHHHHHHHHhhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhh
Q 000913 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1226)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1226)
.+.+....+|+.++++.+++. .+ +....+....+++|+|+++.++.
T Consensus 280 ~~~~~~a~~ri~~ll~~~~~~-----~~--~~~~~~~~~~~I~~~~v~~~y~~--------------------------- 325 (569)
T PRK10789 280 VERGSAAYSRIRAMLAEAPVV-----KD--GSEPVPEGRGELDVNIRQFTYPQ--------------------------- 325 (569)
T ss_pred HHHHHHHHHHHHHHHcCCCcc-----cC--CCCCCCCCCCcEEEEEEEEECCC---------------------------
Confidence 566777888888887665431 00 00011112346999999998732
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCC
Q 000913 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1226)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1226)
.+..+|+|+|++++||+.++|+||||||||||+++|+|+++|+ +|+|.+||.++.+... ++.++||+|+
T Consensus 326 -----~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 397 (569)
T PRK10789 326 -----TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQLDSWRSRLAVVSQT 397 (569)
T ss_pred -----CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEHhhCCHHHHHhheEEEccC
Confidence 1134899999999999999999999999999999999999998 9999999999876543 4679999998
Q ss_pred CCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 000913 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1226)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1226)
+.+++ .|++|||.++.. ....+...++.+. .++ +. ....|++..||
T Consensus 398 ~~lf~-~ti~~Ni~~~~~----~~~~~~~~~~~~~---~~l------------------------~~--~i~~lp~gl~t 443 (569)
T PRK10789 398 PFLFS-DTVANNIALGRP----DATQQEIEHVARL---ASV------------------------HD--DILRLPQGYDT 443 (569)
T ss_pred Ceecc-ccHHHHHhcCCC----CCCHHHHHHHHHH---cCC------------------------HH--HHHhCcCcccc
Confidence 76665 699999987631 1111111211111 000 00 12357788899
Q ss_pred cccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCc
Q 000913 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1226)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1226)
.+|+.+. .||||||||++|||+++++|++++|||||++||+.++..+.+.|+++. .++|+|++.|++ +....+|+
T Consensus 444 ~~~~~g~-~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~--~~~~~~d~ 518 (569)
T PRK10789 444 EVGERGV-MLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRL--SALTEASE 518 (569)
T ss_pred eecCCCC-cCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecch--hHHHcCCE
Confidence 9998654 699999999999999999999999999999999999999999998853 456666654443 45677999
Q ss_pred EEEEcCCeEEEecChhHHHH
Q 000913 395 IILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1226)
|++|++|+++.+|+++++.+
T Consensus 519 i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 519 ILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred EEEEeCCEEEEecCHHHHHH
Confidence 99999999999999998864
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=321.91 Aligned_cols=201 Identities=24% Similarity=0.316 Sum_probs=166.9
Q ss_pred EeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCc--eEEEEEEEcCccCChhhh-cceeeEeecCCC--CCCCCC
Q 000913 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGNITISGYPKKQETF-ARISGYCEQNDI--HSPFVT 957 (1226)
Q Consensus 883 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~--~~~G~i~i~g~~~~~~~~-~~~~gyv~Q~~~--~~~~lT 957 (1226)
+|+|+|+++++|++++|+||||||||||+++|+|..++. +.+|+|.++|.++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 478999999999999999999999999999999987620 168999999987654322 357999999984 556789
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCC---cccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000913 958 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN---PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1034 (1226)
Q Consensus 958 v~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~---~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEP 1034 (1226)
+.|++.+....... .....++.++++++.+++. +..+.. +..|||||||||+||++|+.+|+||+||||
T Consensus 81 ~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLGK---LSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcCc---cHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999875433211 1233456688999999997 344444 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 000913 1035 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1035 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
|+|||+.++..+.+.|+++.++ |+|||+++|+++ ++...+|++++|++ |+++..|+.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 210 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTV 210 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999998764 899999999987 57788999999986 788888874
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=319.24 Aligned_cols=204 Identities=27% Similarity=0.422 Sum_probs=171.1
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-cceEEEecCCCCCCCCCCHHH
Q 000913 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRE 245 (1226)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 245 (1226)
+|+|+|++|+||++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+|
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 799999999999999999999999999999999999998 9999999998765332 467999999988899999999
Q ss_pred HHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 000913 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1226)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1226)
|+.++....+... .+....+..+++.+||.+..++.+ +.||
T Consensus 91 ~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 131 (235)
T cd03299 91 NIAYGLKKRKVDK----------------------------------KEIERKVLEIAEMLGIDHLLNRKP-----ETLS 131 (235)
T ss_pred HHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHHhcCc-----ccCC
Confidence 9988653221100 001123456788899987776654 4699
Q ss_pred hhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEEE
Q 000913 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1226)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~ 405 (1226)
|||||||+||+|++.+|++++|||||+|||..++..+.+.|++++...+.| |+.++|+..++.+++|+|++|++|++++
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~t-ili~tH~~~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVT-VLHVTHDFEEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999876533444 5556777888999999999999999999
Q ss_pred ecChhHHH
Q 000913 406 QGPRELVL 413 (1226)
Q Consensus 406 ~G~~~~~~ 413 (1226)
.|+.+++.
T Consensus 211 ~~~~~~~~ 218 (235)
T cd03299 211 VGKPEEVF 218 (235)
T ss_pred ecCHHHHH
Confidence 99987764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=322.30 Aligned_cols=216 Identities=23% Similarity=0.277 Sum_probs=175.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCce---EEEEEEEcC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---ITGNITISG 931 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~---~~G~i~i~g 931 (1226)
.+.++|+++.++ ++.+|+|+||++++||+++|+|+||||||||+++|+|...+.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 467888887763 2469999999999999999999999999999999999865322 379999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCC
Q 000913 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1226)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 1002 (1226)
.++.. ..+++.++|++|++.+++.+|+.||+.+...... ....++..+.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 145 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTP--- 145 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCC---
Confidence 87532 2345679999999999998999999987643221 1122333455677777777642 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 000913 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1226)
Q Consensus 1003 ~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~ 1082 (1226)
+..||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14272 146 --ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 467999999999999999999999999999999999999999999999864 799999999987 4778899999998
Q ss_pred cCcEEEEeCCC
Q 000913 1083 RGGQEIYVGPL 1093 (1226)
Q Consensus 1083 ~Gg~~~y~G~~ 1093 (1226)
+ |++++.|+.
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14272 222 V-GDLVEHGPT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 6 689998874
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=358.71 Aligned_cols=218 Identities=25% Similarity=0.302 Sum_probs=183.1
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++ ++.+|+||||++++||++||+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEEC
Confidence 378899988763 2469999999999999999999999999999999999876 4689999999876
Q ss_pred Chh----hhcceeeEeecCCCCCCCCCHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 000913 935 KQE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLR----LSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1226)
Q Consensus 935 ~~~----~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr----~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 1006 (1226)
... ..++.+|||+|++.+++.+||+||+.++.... .....+.++.+++++++++.++|.+..++.+ .
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----A 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----h
Confidence 421 12356999999998889999999998753211 1001123344567889999999988777764 5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 000913 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1226)
Q Consensus 1007 ~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~ 1086 (1226)
+|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|++. .+.+.||++++|++ |+
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~ 222 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GS 222 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999999888999999999986 47788999999986 78
Q ss_pred EEEeCCCC
Q 000913 1087 EIYVGPLG 1094 (1226)
Q Consensus 1087 ~~y~G~~~ 1094 (1226)
+++.|+..
T Consensus 223 i~~~g~~~ 230 (510)
T PRK09700 223 SVCSGMVS 230 (510)
T ss_pred Eeeecchh
Confidence 99999864
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=332.80 Aligned_cols=222 Identities=18% Similarity=0.220 Sum_probs=179.7
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCC---ceEEEEEEEc
Q 000913 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITIS 930 (1226)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~ 930 (1226)
..++++|+++.++. +.+.+|+||||+|++||++||+|+|||||||||++|+|.... .+.+|+|.++
T Consensus 79 ~~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~id 147 (329)
T PRK14257 79 NVFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFL 147 (329)
T ss_pred ceEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 36899999988752 124699999999999999999999999999999999997541 2457999999
Q ss_pred CccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 000913 931 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 1005 (1226)
Q Consensus 931 g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~ 1005 (1226)
|.++.. ...++.++||+|++.+++ .|++||+.|+.... ...+.+..++.+.++++.++|.+-.+..++.. +
T Consensus 148 G~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~--~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~-~ 223 (329)
T PRK14257 148 GTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN--GINDRKILEKIVEKSLKSAALWDEVKDDLDKA-G 223 (329)
T ss_pred CEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc--CCChHHHHHHHHHHHHHHcCCcchhhhhhhCC-c
Confidence 998742 235677999999998775 79999999864322 11112223445778899988754323333332 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 000913 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1226)
Q Consensus 1006 ~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg 1085 (1226)
..||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++.+ ++|||+++|++. .+.+.+|++++|++ |
T Consensus 224 ~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~-G 300 (329)
T PRK14257 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ-G 300 (329)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 68999999999999999999999999999999999999999999999875 699999999987 47778999999986 7
Q ss_pred EEEEeCCC
Q 000913 1086 QEIYVGPL 1093 (1226)
Q Consensus 1086 ~~~y~G~~ 1093 (1226)
+++..|++
T Consensus 301 ~i~e~g~~ 308 (329)
T PRK14257 301 WIEEAGET 308 (329)
T ss_pred EEEEeCCH
Confidence 99999985
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=319.58 Aligned_cols=201 Identities=22% Similarity=0.382 Sum_probs=167.9
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-cceEEEecCCCCCCCCCCHHHHHH
Q 000913 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVRETLA 248 (1226)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1226)
|||+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 899999999999999999999999999999999998 9999999998764332 357999999998999999999998
Q ss_pred HHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhH
Q 000913 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1226)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 328 (1226)
++.... .... . .....++.+++.+||++..++.+ +.|||||
T Consensus 94 ~~~~~~-~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 134 (232)
T PRK10771 94 LGLNPG-LKLN-----A----------------------------AQREKLHAIARQMGIEDLLARLP-----GQLSGGQ 134 (232)
T ss_pred cccccc-cCCC-----H----------------------------HHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHH
Confidence 753210 0000 0 01123567889999987777655 4699999
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEEEecC
Q 000913 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (1226)
Q Consensus 329 rqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~ 408 (1226)
||||+||++++.+|++++|||||+|||..++..+.+.|+++.+..+. +||.++|+..++.+++|+|++|++|++++.|+
T Consensus 135 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~-tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~ 213 (232)
T PRK10771 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQL-TLLMVSHSLEDAARIAPRSLVVADGRIAWDGP 213 (232)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999987653344 45557788889999999999999999999999
Q ss_pred hhHHH
Q 000913 409 RELVL 413 (1226)
Q Consensus 409 ~~~~~ 413 (1226)
.+++.
T Consensus 214 ~~~~~ 218 (232)
T PRK10771 214 TDELL 218 (232)
T ss_pred HHHHH
Confidence 88764
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=333.70 Aligned_cols=217 Identities=18% Similarity=0.189 Sum_probs=171.1
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CceeEEEEcCccCCCCCc-------cceEEEecCCCC
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL-KVSGTVTYNGHDMDEFVP-------QRTAAYISQHDN 236 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~I~~nG~~~~~~~~-------~~~~~yv~Q~d~ 236 (1226)
..+|+|||+.|++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|+++..... ++.++||+|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 459999999999999999999999999999999999986311 128999999998765432 246999999864
Q ss_pred --CCCCCCHHHHHHHHhHhcCC-CchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccc
Q 000913 237 --HIGEMTVRETLAFSARCQGV-GTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (1226)
Q Consensus 237 --~~~~lTV~E~l~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1226)
+.+.+||.+++.+....... +... . ...+....+..+|+.+||++..+
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~----------------~-------------~~~~~~~~~~~~L~~~gL~~~~~ 150 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGRWW----------------Q-------------RFGWRKRRAIELLHRVGIKDHKD 150 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhcccccc----------------c-------------cHHHHHHHHHHHHHHCCCCChHH
Confidence 67889999999764321100 0000 0 00011234567899999975321
Q ss_pred ccccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcC
Q 000913 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (1226)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 393 (1226)
+.+..+..|||||||||+||+||+.+|++|||||||+|||+.++.++++.|+++.+ ..+++||.++|+...+.+++|
T Consensus 151 --~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~-~~g~tii~itHdl~~v~~~~d 227 (330)
T PRK15093 151 --AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQ-NNNTTILLISHDLQMLSQWAD 227 (330)
T ss_pred --HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-hcCCEEEEEECCHHHHHHhCC
Confidence 12344567999999999999999999999999999999999999999999999865 334566668999999999999
Q ss_pred cEEEEcCCeEEEecChhHHH
Q 000913 394 DIILLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 394 ~iilL~~G~iv~~G~~~~~~ 413 (1226)
+|++|++|+|++.|+.+++.
T Consensus 228 ri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 228 KINVLYCGQTVETAPSKELV 247 (330)
T ss_pred EEEEEECCEEEEECCHHHHH
Confidence 99999999999999998774
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=323.78 Aligned_cols=214 Identities=21% Similarity=0.283 Sum_probs=175.0
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCc--eEEEEEEEcC
Q 000913 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGNITISG 931 (1226)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~--~~~G~i~i~g 931 (1226)
..++++|+++.++ +.+|+|+|+++++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 3 ~~l~~~~l~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g 68 (254)
T PRK10418 3 QQIELRNIALQAA--------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDG 68 (254)
T ss_pred cEEEEeCeEEEec--------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECC
Confidence 3588899988762 24899999999999999999999999999999999987531 1689999999
Q ss_pred ccCChhhh-cceeeEeecCCC--CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCc---ccccccCCCCC
Q 000913 932 YPKKQETF-ARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP---LRQSLVGLPGV 1005 (1226)
Q Consensus 932 ~~~~~~~~-~~~~gyv~Q~~~--~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~---~~~~~~g~~~~ 1005 (1226)
.++..... ++.++||+|++. +.+..|+.+++.+.+.... ... .++.++++++.++|.+ ..+.. +
T Consensus 69 ~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~ 138 (254)
T PRK10418 69 KPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKLY-----P 138 (254)
T ss_pred eeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhcC-----C
Confidence 87643222 356999999974 4466899998876433221 111 2256789999999976 33443 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecC
Q 000913 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1226)
Q Consensus 1006 ~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~G 1084 (1226)
..|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.+|++++|++
T Consensus 139 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~- 216 (254)
T PRK10418 139 FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH- 216 (254)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999998764 899999999986 47788999999986
Q ss_pred cEEEEeCCC
Q 000913 1085 GQEIYVGPL 1093 (1226)
Q Consensus 1085 g~~~y~G~~ 1093 (1226)
|++++.|+.
T Consensus 217 G~i~~~~~~ 225 (254)
T PRK10418 217 GRIVEQGDV 225 (254)
T ss_pred CEEEEecCH
Confidence 689998874
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=316.85 Aligned_cols=194 Identities=31% Similarity=0.459 Sum_probs=159.8
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCC-CCCC
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDN-HIGE 240 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~-~~~~ 240 (1226)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCC
Confidence 45999999999999999999999999999999999999998 9999999988754321 357999999864 4678
Q ss_pred CCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccc
Q 000913 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1226)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1226)
+||+||+.++....+... .+....++.+++.+||++..+..+
T Consensus 91 ~t~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 132 (211)
T cd03225 91 PTVEEEVAFGLENLGLPE----------------------------------EEIEERVEEALELVGLEGLRDRSP---- 132 (211)
T ss_pred CcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 999999988653221100 001123566788899986666544
Q ss_pred cCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcC
Q 000913 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1226)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1226)
..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.. . +++|+.++|+..++..++|+|++|++
T Consensus 133 -~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tvi~~sH~~~~~~~~~d~i~~l~~ 209 (211)
T cd03225 133 -FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKA-E-GKTIIIVTHDLDLLLELADRVIVLED 209 (211)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 46999999999999999999999999999999999999999999998765 3 44566678888899999999999999
Q ss_pred Ce
Q 000913 401 GQ 402 (1226)
Q Consensus 401 G~ 402 (1226)
|+
T Consensus 210 G~ 211 (211)
T cd03225 210 GK 211 (211)
T ss_pred CC
Confidence 85
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=324.87 Aligned_cols=215 Identities=24% Similarity=0.261 Sum_probs=175.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCcc-
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP- 933 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~- 933 (1226)
.++++|+++.++ ++.+|+|+||++++|++++|+|+||||||||+++|+|... +.+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccc
Confidence 478899988774 2359999999999999999999999999999999999876 468999999986
Q ss_pred ----CCh---hh----hcceeeEeecCCC--CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCc-ccccc
Q 000913 934 ----KKQ---ET----FARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSL 999 (1226)
Q Consensus 934 ----~~~---~~----~~~~~gyv~Q~~~--~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~ 999 (1226)
+.. .. .++.++|++|++. +.+.+|+.|++.+...... .....+.+..+.++++.+++.+ ..++.
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 432 11 2346999999974 5677899999876432111 1122334556789999999963 45544
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeE
Q 000913 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 1078 (1226)
Q Consensus 1000 ~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v 1078 (1226)
+..||||||||++|||+|+.+|+||+|||||+|||+.++..+++.|+++.++ |.|||+++|++. .+.+.+|++
T Consensus 149 -----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i 222 (258)
T PRK11701 149 -----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRL 222 (258)
T ss_pred -----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 4579999999999999999999999999999999999999999999998764 899999999986 466789999
Q ss_pred EEEecCcEEEEeCCC
Q 000913 1079 FLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1079 ~ll~~Gg~~~y~G~~ 1093 (1226)
++|++ |++++.|+.
T Consensus 223 ~~l~~-g~i~~~~~~ 236 (258)
T PRK11701 223 LVMKQ-GRVVESGLT 236 (258)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99986 799999874
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=324.60 Aligned_cols=208 Identities=26% Similarity=0.404 Sum_probs=169.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1226)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|+..+++.+|
T Consensus 16 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (255)
T PRK11231 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGIT 92 (255)
T ss_pred EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCcc
Confidence 4999999999999999999999999999999999999988 9999999987654322 356999999988888899
Q ss_pred HHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 000913 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1226)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1226)
|.||+.|+..-.. ... ... ..+....++.+++.+||++..++.+ .
T Consensus 93 v~~~i~~~~~~~~--~~~-------------~~~---------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 137 (255)
T PRK11231 93 VRELVAYGRSPWL--SLW-------------GRL---------------SAEDNARVNQAMEQTRINHLADRRL-----T 137 (255)
T ss_pred HHHHHHhccchhh--hhc-------------cCC---------------CHHHHHHHHHHHHHcCCHHHHcCCc-----c
Confidence 9999988631000 000 000 0001123567788999987666654 4
Q ss_pred CCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCe
Q 000913 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1226)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1226)
.|||||||||+||+|++.+|++|+|||||+|||+.+...+.+.|+++.. .+ ++|+.++|+..++.+++|++++|++|+
T Consensus 138 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~~-~tiii~tH~~~~~~~~~d~i~~l~~G~ 215 (255)
T PRK11231 138 DLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-QG-KTVVTVLHDLNQASRYCDHLVVLANGH 215 (255)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEECCHHHHHHhcCEEEEEECCe
Confidence 6999999999999999999999999999999999999999999998754 34 455557788889999999999999999
Q ss_pred EEEecChhHHH
Q 000913 403 IVYQGPRELVL 413 (1226)
Q Consensus 403 iv~~G~~~~~~ 413 (1226)
+++.|+.+++.
T Consensus 216 i~~~~~~~~~~ 226 (255)
T PRK11231 216 VMAQGTPEEVM 226 (255)
T ss_pred EEEEcCHHHhc
Confidence 99999987653
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=322.65 Aligned_cols=219 Identities=20% Similarity=0.238 Sum_probs=175.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCc---eEEEEEEEcC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1226)
.++++|+++.+. ++.+|+|+|++|.+|++++|+||||||||||+++|+|...+. +..|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 377888888763 245999999999999999999999999999999999986521 2369999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 000913 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1226)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 1006 (1226)
.++.. ..+++.++|++|++.+++. |++||+.+....+.. ...+..++.++++++.+++.+........ .+.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNLHK-SGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHhhC-Ccc
Confidence 87532 2346779999999988875 999999987543321 11223345577788888875321111111 246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 000913 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1226)
Q Consensus 1007 ~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~ 1086 (1226)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|+++ ++.+.+|++++|++ |+
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~ 223 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GD 223 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-Ce
Confidence 799999999999999999999999999999999999999999999985 5899999999987 47788999999985 68
Q ss_pred EEEeCCC
Q 000913 1087 EIYVGPL 1093 (1226)
Q Consensus 1087 ~~y~G~~ 1093 (1226)
+++.|+.
T Consensus 224 i~~~~~~ 230 (251)
T PRK14249 224 LVEYGRT 230 (251)
T ss_pred EEEeCCH
Confidence 9998874
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=318.75 Aligned_cols=205 Identities=27% Similarity=0.410 Sum_probs=170.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-cceEEEecCCCCCCCCCCHH
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTVR 244 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1226)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|++
T Consensus 14 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (237)
T TIGR00968 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVR 90 (237)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHH
Confidence 4999999999999999999999999999999999999988 9999999998765433 36799999998888899999
Q ss_pred HHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCC
Q 000913 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1226)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 324 (1226)
||+.+.....+... . .....++.+++.+++....++.+ +.|
T Consensus 91 enl~~~~~~~~~~~--~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~l 131 (237)
T TIGR00968 91 DNIAFGLEIRKHPK--A--------------------------------KIKARVEELLELVQLEGLGDRYP-----NQL 131 (237)
T ss_pred HHHHhHHHhcCCCH--H--------------------------------HHHHHHHHHHHHcCCHhHhhCCh-----hhC
Confidence 99988654321100 0 00123456788889976666544 469
Q ss_pred ChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEE
Q 000913 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1226)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv 404 (1226)
|||||||++||++|+.+|++++|||||+|||..+...+.+.|+++.. ..+.+|+.++|...++.+++|+|++|++|+++
T Consensus 132 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~ 210 (237)
T TIGR00968 132 SGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHD-EVHVTTVFVTHDQEEAMEVADRIVVMSNGKIE 210 (237)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998754 32344445677778899999999999999999
Q ss_pred EecChhHHH
Q 000913 405 YQGPRELVL 413 (1226)
Q Consensus 405 ~~G~~~~~~ 413 (1226)
+.|+.+++.
T Consensus 211 ~~~~~~~~~ 219 (237)
T TIGR00968 211 QIGSPDEVY 219 (237)
T ss_pred EecCHHHHH
Confidence 999988764
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=339.45 Aligned_cols=195 Identities=24% Similarity=0.360 Sum_probs=168.3
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCC-------CccceEEEecCCCCCCCCCC
Q 000913 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHDNHIGEMT 242 (1226)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 242 (1226)
|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++||+|+..+++.+|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 899999999999999999999999999999999998 99999999886431 12467999999999999999
Q ss_pred HHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 000913 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1226)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1226)
|+||+.|+.+.. ....++.+++.+||++..+..+ .
T Consensus 93 v~enl~~~~~~~----------------------------------------~~~~~~~~l~~~gl~~~~~~~~-----~ 127 (352)
T PRK11144 93 VRGNLRYGMAKS----------------------------------------MVAQFDKIVALLGIEPLLDRYP-----G 127 (352)
T ss_pred HHHHHHhhhhhh----------------------------------------hHHHHHHHHHHcCCchhhhCCc-----c
Confidence 999999864200 0113466788999987766554 5
Q ss_pred CCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCe
Q 000913 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1226)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1226)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++++.++|+..++..++|+|++|++|+
T Consensus 128 ~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tii~vTHd~~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREI-NIPILYVSHSLDEILRLADRVVVLEQGK 206 (352)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 699999999999999999999999999999999999999999999886533 4455667888899999999999999999
Q ss_pred EEEecChhHHH
Q 000913 403 IVYQGPRELVL 413 (1226)
Q Consensus 403 iv~~G~~~~~~ 413 (1226)
++..|+++++.
T Consensus 207 i~~~g~~~~i~ 217 (352)
T PRK11144 207 VKAFGPLEEVW 217 (352)
T ss_pred EEEecCHHHHH
Confidence 99999999874
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=315.79 Aligned_cols=201 Identities=23% Similarity=0.294 Sum_probs=172.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++ ++.+|+++|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEc
Confidence 488899987763 2369999999999999999999999999999999999876 4689999999876
Q ss_pred ChhhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 000913 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1226)
Q Consensus 935 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrq 1014 (1226)
.....++.++|++|++.+++.+|++||+.+....+. .. .++.++++++.++|.+..+..+ ..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---RR---AKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---Cc---HHHHHHHHHHHcCChhhccCCh-----hhCCHHHHH
Confidence 543344568999999988888999999988654321 11 2345678899999987777663 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 000913 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1226)
Q Consensus 1015 rl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~ 1082 (1226)
|++||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|+++ ++.+.+|+++++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 999999999999999999999999999999999999998888999999999987 5889999999986
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=325.27 Aligned_cols=215 Identities=24% Similarity=0.320 Sum_probs=170.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC--------ccceEEEecCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV--------PQRTAAYISQHDNH 237 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~--------~~~~~~yv~Q~d~~ 237 (1226)
.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+...+|+|.++|.++.... .++.++|++|++.+
T Consensus 18 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (262)
T PRK09984 18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNL 97 (262)
T ss_pred EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccccc
Confidence 4999999999999999999999999999999999999875223699999998864321 13569999999888
Q ss_pred CCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 000913 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1226)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1226)
++.+||+||+.++..... . ..... ... ...+....++.+++.+||++..|..+
T Consensus 98 ~~~~tv~e~l~~~~~~~~--~-------~~~~~--~~~---------------~~~~~~~~~~~~l~~~~l~~~~~~~~- 150 (262)
T PRK09984 98 VNRLSVLENVLIGALGST--P-------FWRTC--FSW---------------FTREQKQRALQALTRVGMVHFAHQRV- 150 (262)
T ss_pred ccCCcHHHHHHhhhcccc--c-------chhhh--ccc---------------ccHHHHHHHHHHHHHcCCHHHHhCCc-
Confidence 999999999987642100 0 00000 000 00011234577899999987666554
Q ss_pred ccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEE
Q 000913 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1226)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iil 397 (1226)
..|||||||||+||+||+.+|++|+|||||+|||..++..+.+.|+++.+.. +++||.++|+..++.+++|+|++
T Consensus 151 ----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tvii~tH~~~~~~~~~d~i~~ 225 (262)
T PRK09984 151 ----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQND-GITVVVTLHQVDYALRYCERIVA 225 (262)
T ss_pred ----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 4699999999999999999999999999999999999999999999986533 45556678888889999999999
Q ss_pred EcCCeEEEecChhHH
Q 000913 398 LSDGQIVYQGPRELV 412 (1226)
Q Consensus 398 L~~G~iv~~G~~~~~ 412 (1226)
|++|++++.|+++++
T Consensus 226 l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 226 LRQGHVFYDGSSQQF 240 (262)
T ss_pred EECCEEEEeCCHHHh
Confidence 999999999998764
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=323.71 Aligned_cols=207 Identities=29% Similarity=0.416 Sum_probs=169.3
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1226)
.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+|
T Consensus 15 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (256)
T TIGR03873 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLT 91 (256)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCCCCC
Confidence 4999999999999999999999999999999999999998 9999999998765432 346999999987788899
Q ss_pred HHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 000913 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1226)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1226)
|+||+.++..... ... . .+ ..+....++.+++.+||.+..++.+ .
T Consensus 92 v~e~l~~~~~~~~---------~~~------~-~~--------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 136 (256)
T TIGR03873 92 VRDVVALGRIPHR---------SLW------A-GD--------------SPHDAAVVDRALARTELSHLADRDM-----S 136 (256)
T ss_pred HHHHHHhcchhhh---------hhc------c-CC--------------CHHHHHHHHHHHHHcCcHhhhcCCc-----c
Confidence 9999988531000 000 0 00 0001123567788999976666554 4
Q ss_pred CCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCe
Q 000913 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1226)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1226)
.|||||||||+||+|++.+|++++|||||+|||+.+...+.+.|+++.. .+ ++||.++|+..++.+++|+|++|++|+
T Consensus 137 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tiii~sH~~~~~~~~~d~i~~l~~G~ 214 (256)
T TIGR03873 137 TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TG-VTVVAALHDLNLAASYCDHVVVLDGGR 214 (256)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cC-CEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 6999999999999999999999999999999999999999999998753 34 456667888889999999999999999
Q ss_pred EEEecChhHH
Q 000913 403 IVYQGPRELV 412 (1226)
Q Consensus 403 iv~~G~~~~~ 412 (1226)
+++.|+.+++
T Consensus 215 i~~~g~~~~~ 224 (256)
T TIGR03873 215 VVAAGPPREV 224 (256)
T ss_pred EEEecCHHHh
Confidence 9999998775
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=366.32 Aligned_cols=257 Identities=23% Similarity=0.363 Sum_probs=194.8
Q ss_pred hHhhHHHHHHhhhccccChHHHHHHHHHHhhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhh
Q 000913 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1226)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1226)
.++.+...+|+.++++.+++. .. +....+.....++++||++.++.
T Consensus 297 ~~~~~~~~~ri~~~l~~~~~~-----~~--~~~~~~~~~~~i~~~~v~f~y~~--------------------------- 342 (571)
T TIGR02203 297 MQRGLAAAESLFTLLDSPPEK-----DT--GTRAIERARGDVEFRNVTFRYPG--------------------------- 342 (571)
T ss_pred HHHHHHHHHHHHHHHcCCCCC-----CC--CCCCCCCCCCeEEEEEEEEEcCC---------------------------
Confidence 667788888888887665441 00 00011112346999999999842
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCC
Q 000913 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1226)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1226)
...++|+|+|+.++||+.++|+|+||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|+
T Consensus 343 -----~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~ 414 (571)
T TIGR02203 343 -----RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQD 414 (571)
T ss_pred -----CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCHHHHHhhceEEccC
Confidence 1124999999999999999999999999999999999999998 9999999999876653 4679999997
Q ss_pred CCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 000913 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1226)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1226)
+. +++.|++|||.++..- ....+.+.++.+.. + .++.+ -.|++..||
T Consensus 415 ~~-lf~~Ti~~Ni~~~~~~---~~~~~~i~~~l~~~---~------------------------l~~~i--~~lp~gldt 461 (571)
T TIGR02203 415 VV-LFNDTIANNIAYGRTE---QADRAEIERALAAA---Y------------------------AQDFV--DKLPLGLDT 461 (571)
T ss_pred cc-cccccHHHHHhcCCCC---CCCHHHHHHHHHHc---C------------------------hHHHH--HhCcCcccc
Confidence 64 5567999999876310 11112222221110 0 11111 236677899
Q ss_pred cccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCc
Q 000913 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1226)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1226)
.||+.+ +.||||||||++|||+++++|+|++||||||+||..++..|.+.|++.. .++|+|++ +|+ ....+.||+
T Consensus 462 ~i~~~g-~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~--~~~tiIii-tH~-~~~~~~~D~ 536 (571)
T TIGR02203 462 PIGENG-VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM--QGRTTLVI-AHR-LSTIEKADR 536 (571)
T ss_pred eecCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh--CCCEEEEE-ehh-hHHHHhCCE
Confidence 999875 4699999999999999999999999999999999999999999998753 35566654 444 366889999
Q ss_pred EEEEcCCeEEEecChhHHHH
Q 000913 395 IILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1226)
|++|++|+++..|+++++.+
T Consensus 537 ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 537 IVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred EEEEeCCEEEeeCCHHHHHH
Confidence 99999999999999998753
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=364.55 Aligned_cols=223 Identities=22% Similarity=0.367 Sum_probs=177.3
Q ss_pred ceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHH
Q 000913 117 VEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLL 196 (1226)
Q Consensus 117 ~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~ 196 (1226)
..++++|+++.++. + .++|+|+|+.++||+.++|+|+||||||||++
T Consensus 333 ~~I~~~~vsf~y~~------------------------------~---~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~ 379 (588)
T PRK13657 333 GAVEFDDVSFSYDN------------------------------S---RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLIN 379 (588)
T ss_pred CeEEEEEEEEEeCC------------------------------C---CceecceeEEECCCCEEEEECCCCCCHHHHHH
Confidence 36999999999842 1 23899999999999999999999999999999
Q ss_pred HHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhc
Q 000913 197 ALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273 (1226)
Q Consensus 197 ~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 273 (1226)
+|+|+++|+ +|+|.+||.++++... ++.++||+|++.+| +.|++|||.++.. ....+.+.++.+..
T Consensus 380 lL~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~~Ni~~~~~----~~~d~~i~~al~~~--- 448 (588)
T PRK13657 380 LLQRVFDPQ---SGRILIDGTDIRTVTRASLRRNIAVVFQDAGLF-NRSIEDNIRVGRP----DATDEEMRAAAERA--- 448 (588)
T ss_pred HHhcCcCCC---CCEEEECCEEhhhCCHHHHHhheEEEecCcccc-cccHHHHHhcCCC----CCCHHHHHHHHHHh---
Confidence 999999998 9999999999887654 46899999987655 5799999988631 11112222221110
Q ss_pred CCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCC
Q 000913 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTG 353 (1226)
Q Consensus 274 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsg 353 (1226)
-.+..+ -.|++..||.+|+.+ +.||||||||++|||+|+++|+|++||||||+
T Consensus 449 ------------------------~l~~~i--~~lp~gldt~i~~~g-~~LSgGq~QRialARall~~~~iliLDEpts~ 501 (588)
T PRK13657 449 ------------------------QAHDFI--ERKPDGYDTVVGERG-RQLSGGERQRLAIARALLKDPPILILDEATSA 501 (588)
T ss_pred ------------------------CHHHHH--HhCcccccchhcCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 011112 236777899999864 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEEEecChhHHHH
Q 000913 354 LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 354 LDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~ 414 (1226)
||+.++..|.+.|++.. .++|+|++ +|.. +..+.+|+|++|++|+++..|+++++.+
T Consensus 502 LD~~t~~~i~~~l~~~~--~~~tvIii-tHr~-~~~~~~D~ii~l~~G~i~~~g~~~~l~~ 558 (588)
T PRK13657 502 LDVETEAKVKAALDELM--KGRTTFII-AHRL-STVRNADRILVFDNGRVVESGSFDELVA 558 (588)
T ss_pred CCHHHHHHHHHHHHHHh--cCCEEEEE-EecH-HHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999998753 34566664 4443 5678899999999999999999998864
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=314.35 Aligned_cols=199 Identities=23% Similarity=0.291 Sum_probs=165.9
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++ .+.+|+|+|+++++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 45678877763 2469999999999999999999999999999999999876 46899999998754
Q ss_pred h--hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 000913 936 Q--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1226)
Q Consensus 936 ~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqr 1013 (1226)
. ..+++.++|++|++.+++.+|+.|++.+....+. . ..++.++++++.++|.+..++. +..||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHH
Confidence 2 2345678999999988889999999988654321 1 1235678999999998777765 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 000913 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1226)
Q Consensus 1014 qrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll 1081 (1226)
||++||++|+++|++|+|||||+|||+.++..+++.|+++.++|.|||+++|+++. +.+.-+|++.+
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-i~~~~~~~~~~ 202 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLP-VASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhh-hccCCceEEec
Confidence 99999999999999999999999999999999999999987778999999999863 44433566554
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=322.95 Aligned_cols=229 Identities=17% Similarity=0.242 Sum_probs=177.5
Q ss_pred CCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHH
Q 000913 113 DLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKT 192 (1226)
Q Consensus 113 ~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKS 192 (1226)
+.|...++++|+++.+. ..++|+|+|+.|++|++++|+||||||||
T Consensus 8 ~~~~~~l~~~~l~~~~~----------------------------------~~~il~~isl~i~~Ge~~~i~G~nGsGKS 53 (260)
T PRK10744 8 ATAPSKIQVRNLNFYYG----------------------------------KFHALKNINLDIAKNQVTAFIGPSGCGKS 53 (260)
T ss_pred cCCCceEEEEEEEEEeC----------------------------------CeEEeeceeEEEcCCCEEEEECCCCCCHH
Confidence 45667789999998762 12499999999999999999999999999
Q ss_pred HHHHHHhcCCC--CCCCceeEEEEcCccCCCC--C---ccceEEEecCCCCCCCCCCHHHHHHHHhHhcCCCchhhHhHH
Q 000913 193 TLLLALAGKLD--PTLKVSGTVTYNGHDMDEF--V---PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTE 265 (1226)
Q Consensus 193 TLL~~L~G~~~--~~~~~~G~I~~nG~~~~~~--~---~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~ 265 (1226)
|||++|+|.++ |....+|+|.++|.++... . .++.++|++|+..+++ +||+||+.++...... ...
T Consensus 54 TLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~-~~~----- 126 (260)
T PRK10744 54 TLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEK-LSR----- 126 (260)
T ss_pred HHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCC-CCH-----
Confidence 99999999986 2101289999999887421 1 2467999999887777 8999999886532210 000
Q ss_pred HHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHhhHHHHHHHHhcCCccc
Q 000913 266 LARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALAL 345 (1226)
Q Consensus 266 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vl 345 (1226)
.+....++.+++.+|+........ +.....|||||||||+||++|+.+|++|
T Consensus 127 ---------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~ll 178 (260)
T PRK10744 127 ---------------------------AEMDERVEWALTKAALWNEVKDKL-HQSGYSLSGGQQQRLCIARGIAIRPEVL 178 (260)
T ss_pred ---------------------------HHHHHHHHHHHHHcCCChhhHHHH-hcCCCCCCHHHHHHHHHHHHHHCCCCEE
Confidence 001123456778888742111111 2334579999999999999999999999
Q ss_pred eeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEEEecChhHHH
Q 000913 346 FMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 346 lLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~ 413 (1226)
+|||||+|||..+...+.+.|+++. .+ ++||.++|+..++.+++|++++|++|+++..|+.+++.
T Consensus 179 lLDEPt~~LD~~~~~~l~~~L~~~~--~~-~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 179 LLDEPCSALDPISTGRIEELITELK--QD-YTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999874 34 45566778888899999999999999999999988764
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=322.73 Aligned_cols=219 Identities=19% Similarity=0.229 Sum_probs=177.7
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCC--c-eEEEEEEEc
Q 000913 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITIS 930 (1226)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~-~~~G~i~i~ 930 (1226)
..+..+.+++.+. ++.+|+|+||++++||++||+|+||||||||+++|+|...+ + +.+|+|.++
T Consensus 7 ~~~~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~ 73 (261)
T PRK14263 7 IVMDCKLDKIFYG-------------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFL 73 (261)
T ss_pred ceEEEEeEEEEeC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEEC
Confidence 4567777776652 35799999999999999999999999999999999998652 1 258999999
Q ss_pred CccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 000913 931 GYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGV 1005 (1226)
Q Consensus 931 g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~ 1005 (1226)
|.++.. ..+++.++|++|++.++ .+|+.||+.+....+. . ..+.++.++++++.++|.+......+. .+
T Consensus 74 g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~~-~~ 147 (261)
T PRK14263 74 GQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLKV-SG 147 (261)
T ss_pred CEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhhC-Cc
Confidence 987532 23456799999998877 5999999998754332 1 123345688899999986433222221 24
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe---
Q 000913 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK--- 1082 (1226)
Q Consensus 1006 ~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~--- 1082 (1226)
..||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++. +++|||+++|+++ ++.+.+|++++|+
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~ 225 (261)
T PRK14263 148 LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDI 225 (261)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEeccc
Confidence 6799999999999999999999999999999999999999999999985 4799999999987 4788999999996
Q ss_pred ----cCcEEEEeCCC
Q 000913 1083 ----RGGQEIYVGPL 1093 (1226)
Q Consensus 1083 ----~Gg~~~y~G~~ 1093 (1226)
++|+++..|+.
T Consensus 226 ~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 226 SQGTRTGYLVEMGPT 240 (261)
T ss_pred ccccCCceEEEeCCH
Confidence 45899999974
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=323.04 Aligned_cols=208 Identities=22% Similarity=0.307 Sum_probs=165.9
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC-----CCCceeEEEEcCccCCCC-----CccceEEEecCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP-----TLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~-----~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (1226)
.+|+|+|+.|+||++++|+|||||||||||++|+|.++| + +|+|+++|.++... ..++.++|++|++
T Consensus 33 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 109 (267)
T PRK14235 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRV---TGKITLDGEDIYDPRLDVVELRARVGMVFQKP 109 (267)
T ss_pred EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---ceEEEECCEECcccccchHHHhhceEEEecCC
Confidence 499999999999999999999999999999999999874 5 89999999887531 1245799999998
Q ss_pred CCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccc
Q 000913 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1226)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1226)
.+++ .||+||+.|+....+..... .+....++.+++.+||.+.....
T Consensus 110 ~~~~-~tv~enl~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~ 156 (267)
T PRK14235 110 NPFP-KSIYENVAYGPRIHGLARSK--------------------------------AELDEIVETSLRKAGLWEEVKDR 156 (267)
T ss_pred CCCC-CcHHHHHHHHHHhcccccch--------------------------------HHHHHHHHHHHHHcCCchhhhHH
Confidence 7777 49999999875432210000 00112356678888886421111
Q ss_pred ccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcE
Q 000913 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1226)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1226)
. +..++.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ +. +|+.++|+..++..++|++
T Consensus 157 ~-~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~-tiiivtH~~~~~~~~~d~v 232 (267)
T PRK14235 157 L-HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NY-TIVIVTHSMQQAARVSQRT 232 (267)
T ss_pred h-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CC-eEEEEEcCHHHHHhhCCEE
Confidence 1 233567999999999999999999999999999999999999999999998743 44 5555778888999999999
Q ss_pred EEEcCCeEEEecChhHHH
Q 000913 396 ILLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1226)
++|++|+++.+|+.+++.
T Consensus 233 ~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 233 AFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988763
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=314.51 Aligned_cols=199 Identities=21% Similarity=0.347 Sum_probs=164.8
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC-ccceEEEecCCCCCCCCCCHHH
Q 000913 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV-PQRTAAYISQHDNHIGEMTVRE 245 (1226)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 245 (1226)
+++|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++||+|++.+++.+|++|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 357999999999999999999999999999999999998 999999999875432 2467999999998999999999
Q ss_pred HHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCC
Q 000913 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1226)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 325 (1226)
|+.+..... .... .+....++.+++.+||++..++.+ +.||
T Consensus 90 n~~~~~~~~-~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 130 (213)
T TIGR01277 90 NIGLGLHPG-LKLN---------------------------------AEQQEKVVDAAQQVGIADYLDRLP-----EQLS 130 (213)
T ss_pred HHHhHhhcc-CCcc---------------------------------HHHHHHHHHHHHHcCcHHHhhCCc-----ccCC
Confidence 998753211 0000 000123466788999987666544 4699
Q ss_pred hhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEEE
Q 000913 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1226)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~ 405 (1226)
||||||++||++++.+|++++|||||+|||..++..+.+.|+++.. ..+++|+.++|+..++.+++|++++|++|++++
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCS-ERQRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 9999999999999999999999999999999999999999998764 334555557888888999999999999999999
Q ss_pred ecC
Q 000913 406 QGP 408 (1226)
Q Consensus 406 ~G~ 408 (1226)
.|.
T Consensus 210 ~~~ 212 (213)
T TIGR01277 210 VSD 212 (213)
T ss_pred ecC
Confidence 875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=316.68 Aligned_cols=194 Identities=23% Similarity=0.380 Sum_probs=160.9
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCC-----CccceEEEecCCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHIGE 240 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~~~ 240 (1226)
.+|+|+|+.++||++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.
T Consensus 14 ~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (213)
T cd03262 14 HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPH 90 (213)
T ss_pred EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccccCCC
Confidence 4999999999999999999999999999999999999988 99999999887421 123679999999888989
Q ss_pred CCHHHHHHHHhH-hcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 000913 241 MTVRETLAFSAR-CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1226)
Q Consensus 241 lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1226)
+||+||+.++.. .++... .+....++.+++.+||++..++.+
T Consensus 91 ~t~~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 133 (213)
T cd03262 91 LTVLENITLAPIKVKGMSK----------------------------------AEAEERALELLEKVGLADKADAYP--- 133 (213)
T ss_pred CcHHHHHHhHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhhhCc---
Confidence 999999988642 111000 001123466788899987666554
Q ss_pred ccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEc
Q 000913 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1226)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1226)
..|||||||||+||++++.+|+++||||||+|||+.+...+.+.|+++.. .+. +||.++|+..++.+++|+|++|+
T Consensus 134 --~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~-tvi~~sh~~~~~~~~~d~i~~l~ 209 (213)
T cd03262 134 --AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGM-TMVVVTHEMGFAREVADRVIFMD 209 (213)
T ss_pred --cccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCC-EEEEEeCCHHHHHHhCCEEEEEe
Confidence 56999999999999999999999999999999999999999999998764 344 45557888899999999999999
Q ss_pred CCeE
Q 000913 400 DGQI 403 (1226)
Q Consensus 400 ~G~i 403 (1226)
+|++
T Consensus 210 ~g~i 213 (213)
T cd03262 210 DGRI 213 (213)
T ss_pred CCcC
Confidence 9974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=317.03 Aligned_cols=193 Identities=26% Similarity=0.347 Sum_probs=160.9
Q ss_pred cCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCChhhhcceeeEeecCCCCCCCCC
Q 000913 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 957 (1226)
Q Consensus 878 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lT 957 (1226)
++++.+|+|+||+|++|++++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+...+.+.+|
T Consensus 32 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~~~~~~~t 100 (224)
T cd03220 32 VGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGGGFNPELT 100 (224)
T ss_pred cCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hcccccCCCCCc
Confidence 345679999999999999999999999999999999999876 568999999976421 111233456789
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000913 958 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1037 (1226)
Q Consensus 958 v~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsg 1037 (1226)
|+||+.+....+. ....+.++.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||+|
T Consensus 101 v~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP~~g 172 (224)
T cd03220 101 GRENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDEVLAV 172 (224)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999988654321 233444556888999999988777664 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 000913 1038 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1226)
Q Consensus 1038 LD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G 1091 (1226)
||+.++..+++.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 173 LD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 173 GDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 9999999999999998777899999999986 47778999999986 6877654
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=314.05 Aligned_cols=195 Identities=27% Similarity=0.333 Sum_probs=166.4
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh
Q 000913 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1226)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1226)
+++|+++.++ ++.+|+|+|++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (201)
T cd03231 2 EADELTCERD-------------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLDF 66 (201)
T ss_pred EEEEEEEEeC-------------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 4677776653 2468999999999999999999999999999999999876 468999999987532
Q ss_pred --hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 000913 937 --ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1226)
Q Consensus 937 --~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrq 1014 (1226)
..+++.++|++|++.+++.+|++||+.+.... . .+++++++++.+++.+..++. +..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 132 (201)
T cd03231 67 QRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRP-----VAQLSAGQQR 132 (201)
T ss_pred ccHHhhhheEEeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCc-----hhhCCHHHHH
Confidence 23556799999998888889999999875311 1 234578899999998877665 3579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEE
Q 000913 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1226)
Q Consensus 1015 rl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll 1081 (1226)
|++||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|++. ++.+.+|+++++
T Consensus 133 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 133 RVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 999999999999999999999999999999999999998777999999999986 577888999876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=316.54 Aligned_cols=224 Identities=23% Similarity=0.327 Sum_probs=181.9
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCC-C--ceEEEEEEEcCc
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-G--GYITGNITISGY 932 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~-~--~~~~G~i~i~g~ 932 (1226)
++.+|++.++.... +...+++||||++++||++||+|.||||||||.++|.|... + ...+|+|.++|.
T Consensus 2 L~v~nL~v~f~~~~---------g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTDA---------GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecCC---------ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 46778876665431 24579999999999999999999999999999999999765 2 346689999998
Q ss_pred cC---Chhh----hcceeeEeecCCC--CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCC
Q 000913 933 PK---KQET----FARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 1003 (1226)
Q Consensus 933 ~~---~~~~----~~~~~gyv~Q~~~--~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~ 1003 (1226)
++ +.+. +.+.++|++|++. +.|.+||.+-+.=......... ..++..+++.++|+.++|.+-....-..
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~Y- 150 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLKSY- 150 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHhhC-
Confidence 64 2221 2356999999975 6788999887765444332111 3456677889999999998643222222
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEe
Q 000913 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1226)
Q Consensus 1004 ~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~H~p~~~i~~~~D~v~ll~ 1082 (1226)
+.+|||||||||.||.||+.+|++||.||||++||...++.|+++|+++.+ .|.|+|++|||+.. +.+.||||+||.
T Consensus 151 -PhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~v-va~~aDri~VMY 228 (316)
T COG0444 151 -PHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMY 228 (316)
T ss_pred -CcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcceEEEEE
Confidence 468999999999999999999999999999999999999999999999986 69999999999985 899999999998
Q ss_pred cCcEEEEeCCC
Q 000913 1083 RGGQEIYVGPL 1093 (1226)
Q Consensus 1083 ~Gg~~~y~G~~ 1093 (1226)
. |++|..|+.
T Consensus 229 a-G~iVE~g~~ 238 (316)
T COG0444 229 A-GRIVEEGPV 238 (316)
T ss_pred C-cEEEEeCCH
Confidence 5 899999985
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=355.03 Aligned_cols=122 Identities=24% Similarity=0.302 Sum_probs=102.0
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhhCC---CEEEE
Q 000913 956 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELVANP---SIIFM 1031 (1226)
Q Consensus 956 lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p---~il~L 1031 (1226)
+||.|++.|...+.. .....+.++.++|... .+.. ...||||||||+.||++|+.+| ++++|
T Consensus 792 ltv~E~l~~f~~~~~---------i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIPK---------IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhchh---------hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 789999888654321 1124578999999753 4444 3579999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe-----cCcEEEEeCCC
Q 000913 1032 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPL 1093 (1226)
Q Consensus 1032 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~-----~Gg~~~y~G~~ 1093 (1226)
||||+|||+.....+++.|+++.++|.|||+++|++. ..+.+|+++.|. +||++++.|+.
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~ 922 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTP 922 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCH
Confidence 9999999999999999999999888999999999985 346899999995 57899999974
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=365.33 Aligned_cols=134 Identities=22% Similarity=0.267 Sum_probs=108.6
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHh---hCCC
Q 000913 952 HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLPGVSGLSTEQRKRLTIAVELV---ANPS 1027 (1226)
Q Consensus 952 ~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~g~~~~~~LSgGqrqrl~ia~~L~---~~p~ 1027 (1226)
.+...||.|+|.++..-......+.++..+.+ ++++.++|..+ .+.. ...||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 44567999999887643221112233444556 58889999875 4555 3579999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe-----cCcEEEEeCCC
Q 000913 1028 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGQEIYVGPL 1093 (1226)
Q Consensus 1028 il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~-----~Gg~~~y~G~~ 1093 (1226)
+++|||||+|||+.+...+++.|+++.++|.|||+++|++.. + +.+|++++|. .||+++..|+.
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~-i-~~aDrVi~L~p~gg~~~G~iv~~Gtp 901 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHV-V-KVADYVLELGPEGGNLGGYLLASCSP 901 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEccCCCCCCCEEEEeCCH
Confidence 999999999999999999999999998889999999999863 4 8999999996 36899999975
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=301.58 Aligned_cols=206 Identities=25% Similarity=0.391 Sum_probs=181.2
Q ss_pred CceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh---hhhcceeeEeecCCCCCCC
Q 000913 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPF 955 (1226)
Q Consensus 879 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~ 955 (1226)
+.+.+|+++|..|++|.+++|+|||||||||||.+++++.. ..+|+|.++|.++.. ..+++.++..-|+......
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~r 89 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSILKQENHINSR 89 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHHHHHHhhchhhhe
Confidence 45789999999999999999999999999999999998766 568999999988643 4567778888998888888
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000913 956 VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1035 (1226)
Q Consensus 956 lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPT 1035 (1226)
+||+|-+.|+.......... ++.+..++++++.++|+++.|+.. .+||||||||..||+.|+.+.+.++||||.
T Consensus 90 lTV~dLv~FGRfPYSqGRlt-~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTdyvlLDEPL 163 (252)
T COG4604 90 LTVRDLVGFGRFPYSQGRLT-KEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPL 163 (252)
T ss_pred eEHHHHhhcCCCcccCCCCc-hHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCcEEEecCcc
Confidence 99999999985544333333 455677999999999999999985 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 000913 1036 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1094 (1226)
Q Consensus 1036 sgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~~ 1094 (1226)
++||...+..+|+.||+++++ |+|||++.||.++ .-.+.|+++.|++ |+++..|++.
T Consensus 164 NNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~-G~vv~~G~~~ 221 (252)
T COG4604 164 NNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKN-GKVVKQGSPD 221 (252)
T ss_pred cccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecC-CEEEecCCHH
Confidence 999999999999999999866 9999999999985 5567899999996 7999999974
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=317.09 Aligned_cols=200 Identities=28% Similarity=0.443 Sum_probs=160.1
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCC--CCCC
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHI--GEMT 242 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~--~~lT 242 (1226)
.++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. .++.++|++|++.+. +.+|
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEK--ERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHH--HHhheEEeccccccccCCCCc
Confidence 35999999999999999999999999999999999999998 9999999987642 346799999987653 3489
Q ss_pred HHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 000913 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1226)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1226)
|+||+.++...... ..... ..+....++.+++.+||++..++.+ .
T Consensus 87 v~e~l~~~~~~~~~--~~~~~----------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 131 (213)
T cd03235 87 VRDVVLMGLYGHKG--LFRRL----------------------------SKADKAKVDEALERVGLSELADRQI-----G 131 (213)
T ss_pred HHHHHHhccccccc--cccCC----------------------------CHHHHHHHHHHHHHcCCHHHHhCCc-----c
Confidence 99999886421100 00000 0001123567888999987666554 4
Q ss_pred CCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCe
Q 000913 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1226)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1226)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ . +++||.++|+..++.+++|+|++|++|
T Consensus 132 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tvi~~sH~~~~~~~~~d~i~~l~~~- 208 (213)
T cd03235 132 ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-E-GMTILVVTHDLGLVLEYFDRVLLLNRT- 208 (213)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEcCc-
Confidence 6999999999999999999999999999999999999999999998765 3 445666788888999999999999886
Q ss_pred EEEec
Q 000913 403 IVYQG 407 (1226)
Q Consensus 403 iv~~G 407 (1226)
+++.|
T Consensus 209 ~~~~g 213 (213)
T cd03235 209 VVASG 213 (213)
T ss_pred EeecC
Confidence 66554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=324.37 Aligned_cols=205 Identities=22% Similarity=0.287 Sum_probs=168.4
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC---ccceEEEecCCCC-CCCC
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDN-HIGE 240 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~ 240 (1226)
..+|+|+|+.+++|++++|+|+||||||||+++|+|.++|+ +|+|+++|.++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVG 96 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhcc
Confidence 34999999999999999999999999999999999999998 999999999875432 2467999999863 6778
Q ss_pred CCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccc
Q 000913 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1226)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1226)
.||.||+.++....+.. + .+....++.+++.+||.+..++.
T Consensus 97 ~tv~eni~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~----- 137 (277)
T PRK13642 97 ATVEDDVAFGMENQGIP-R---------------------------------EEMIKRVDEALLAVNMLDFKTRE----- 137 (277)
T ss_pred CCHHHHHHhhHHHcCCC-H---------------------------------HHHHHHHHHHHHHCCCHhHhhCC-----
Confidence 99999998865322110 0 00112356778889998766654
Q ss_pred cCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcC
Q 000913 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1226)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1226)
+..|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++....+.| |+.++|+..++. .+|+|++|++
T Consensus 138 ~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~t-iil~sH~~~~~~-~~d~i~~l~~ 215 (277)
T PRK13642 138 PARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLT-VLSITHDLDEAA-SSDRILVMKA 215 (277)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHH-hCCEEEEEEC
Confidence 45699999999999999999999999999999999999999999999876532444 555777777775 6999999999
Q ss_pred CeEEEecChhHHH
Q 000913 401 GQIVYQGPRELVL 413 (1226)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1226)
|+++..|+++++.
T Consensus 216 G~i~~~g~~~~~~ 228 (277)
T PRK13642 216 GEIIKEAAPSELF 228 (277)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988764
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=325.22 Aligned_cols=215 Identities=20% Similarity=0.253 Sum_probs=174.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCC--C-ceEEEEEEEcC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 931 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-~~~~G~i~i~g 931 (1226)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+|||||||||++|+|... + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 488999998874 2469999999999999999999999999999999999642 1 13579999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCC
Q 000913 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1226)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 1002 (1226)
.++.. ..+++.++|++|++.+++. |++||+.+...... .......++.+.++++.+++.. ..+..
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 87632 2345679999999888774 99999987643221 1122233455778888888852 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 000913 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1226)
Q Consensus 1003 ~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~ 1082 (1226)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|+
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~ 237 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL 237 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999986 4778999999998
Q ss_pred cCcEEEEeCCC
Q 000913 1083 RGGQEIYVGPL 1093 (1226)
Q Consensus 1083 ~Gg~~~y~G~~ 1093 (1226)
+ |++++.|+.
T Consensus 238 ~-G~i~~~~~~ 247 (268)
T PRK14248 238 N-GDLVEYDQT 247 (268)
T ss_pred C-CEEEEeCCH
Confidence 6 789999874
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=326.99 Aligned_cols=215 Identities=20% Similarity=0.270 Sum_probs=175.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCC--C-ceEEEEEEEcC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 931 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-~~~~G~i~i~g 931 (1226)
.+.++++++.++ .+.+|+|+|++|++||+++|+|+|||||||||++|+|... + .+.+|+|.++|
T Consensus 39 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 578999988874 2359999999999999999999999999999999999642 1 12589999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCC----cccccccCC
Q 000913 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSLVGL 1002 (1226)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~~g~ 1002 (1226)
.++.. ..+++.++|++|++.+++. ||+||+.|....+.. .+....++.+.++++.+++. +..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 179 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDKN--- 179 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhCC---
Confidence 87532 1345679999999888774 999999986533211 12233345677888888874 233332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 000913 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1226)
Q Consensus 1003 ~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~ 1082 (1226)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|+
T Consensus 180 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~ 255 (286)
T PRK14275 180 --ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFY 255 (286)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 467999999999999999999999999999999999999999999999865 689999999987 4778899999998
Q ss_pred cCcEEEEeCCC
Q 000913 1083 RGGQEIYVGPL 1093 (1226)
Q Consensus 1083 ~Gg~~~y~G~~ 1093 (1226)
+ |++++.|+.
T Consensus 256 ~-G~i~~~g~~ 265 (286)
T PRK14275 256 E-GVLVEHAPT 265 (286)
T ss_pred C-CEEEEeCCH
Confidence 6 789998874
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=324.37 Aligned_cols=219 Identities=23% Similarity=0.280 Sum_probs=178.6
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCC---ceEEEEEEEcC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITISG 931 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~g 931 (1226)
.+.++|+++.++ .+.+|+||||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 478999998874 24699999999999999999999999999999999998652 13689999999
Q ss_pred ccCCh----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 000913 932 YPKKQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 1007 (1226)
Q Consensus 932 ~~~~~----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~ 1007 (1226)
.++.. ..+++.++|++|++.+++ .|++||+.+...... ..+.++....+.++++.+++.+..+..... .+..
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~-~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLSD-SPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhhC-Cccc
Confidence 87532 234667999999988887 899999987643221 123344445677889999986532211111 2467
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 000913 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1226)
Q Consensus 1008 LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~ 1087 (1226)
||||||||++|||+|+.+|+||+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|++ |++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999876 589999999986 57889999999986 799
Q ss_pred EEeCCC
Q 000913 1088 IYVGPL 1093 (1226)
Q Consensus 1088 ~y~G~~ 1093 (1226)
++.|+.
T Consensus 241 ~~~g~~ 246 (276)
T PRK14271 241 VEEGPT 246 (276)
T ss_pred EEeCCH
Confidence 999874
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=318.88 Aligned_cols=207 Identities=24% Similarity=0.302 Sum_probs=167.1
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC----CCCceeEEEEcCccCCCCCcc-ceEEEecCCCC--CCC
Q 000913 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP----TLKVSGTVTYNGHDMDEFVPQ-RTAAYISQHDN--HIG 239 (1226)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~----~~~~~G~I~~nG~~~~~~~~~-~~~~yv~Q~d~--~~~ 239 (1226)
+|+|+|+++++|++++|+||||||||||+++|+|.++| + +|+|.++|+++.....+ +.++|++|++. +.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 57999999999999999999999999999999999988 6 99999999987654332 57999999874 556
Q ss_pred CCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 000913 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1226)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1226)
.+|+.|++.+.....+... .+....++.+++.+||++. +...+.
T Consensus 78 ~~t~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~--~~~~~~ 121 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLS----------------------------------KQARALILEALEAVGLPDP--EEVLKK 121 (230)
T ss_pred ccCHHHHHHHHHHHcCccH----------------------------------HHHHHHHHHHHHHcCCCch--HHHHhC
Confidence 7899999987643221100 0011235678899999732 011123
Q ss_pred ccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEc
Q 000913 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1226)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1226)
.+..|||||||||+||++++.+|++++|||||+|||..+...+.+.|+++.+ ..+++|+.++|+..++..++|+|++|+
T Consensus 122 ~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~ 200 (230)
T TIGR02770 122 YPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ-LFGTGILLITHDLGVVARIADEVAVMD 200 (230)
T ss_pred ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 4456999999999999999999999999999999999999999999998765 334455557788889999999999999
Q ss_pred CCeEEEecChhHHH
Q 000913 400 DGQIVYQGPRELVL 413 (1226)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1226)
+|+++..|+++++.
T Consensus 201 ~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 201 DGRIVERGTVKEIF 214 (230)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999988764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=321.46 Aligned_cols=219 Identities=24% Similarity=0.252 Sum_probs=175.8
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCc---eEEEEEEEcC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1226)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..... +.+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 478899988763 246999999999999999999999999999999999974321 2479999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 000913 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1226)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 1006 (1226)
.++.. ...++.++|++|++.+++. ||+||+.|....+.. ....+.++.+.++++.+++.+........ .+.
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 148 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLHD-SAL 148 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhhc-Chh
Confidence 87642 2345679999999988874 999999987544321 12233445678889988875321111111 145
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 000913 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1226)
Q Consensus 1007 ~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~ 1086 (1226)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|++ |+
T Consensus 149 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~-G~ 225 (253)
T PRK14261 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYL-GK 225 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999875 689999999986 47788999999986 78
Q ss_pred EEEeCCC
Q 000913 1087 EIYVGPL 1093 (1226)
Q Consensus 1087 ~~y~G~~ 1093 (1226)
++..|+.
T Consensus 226 i~~~g~~ 232 (253)
T PRK14261 226 LIEFDKT 232 (253)
T ss_pred EEEcCCH
Confidence 9988874
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=323.54 Aligned_cols=207 Identities=22% Similarity=0.258 Sum_probs=169.0
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCC--CCC
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDN--HIG 239 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~--~~~ 239 (1226)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. +++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 45999999999999999999999999999999999999998 9999999988753221 246999999864 577
Q ss_pred CCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-ccccccccc
Q 000913 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGD 318 (1226)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~ 318 (1226)
.+||.+++.+..+....... .+....++.+++.+||. ...++.
T Consensus 103 ~~tv~~~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 146 (267)
T PRK15112 103 RQRISQILDFPLRLNTDLEP---------------------------------EQREKQIIETLRQVGLLPDHASYY--- 146 (267)
T ss_pred chhHHHHHHHHHHhccCCCH---------------------------------HHHHHHHHHHHHHcCCChHHHhcC---
Confidence 88999999886543210000 00112356788999994 455544
Q ss_pred cccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEE
Q 000913 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1226)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1226)
+..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++.+.. +++||.++|+..++..++|++++|
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tviivsH~~~~~~~~~d~i~~l 223 (267)
T PRK15112 147 --PHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQ-GISYIYVTQHLGMMKHISDQVLVM 223 (267)
T ss_pred --chhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHhcCEEEEE
Confidence 34699999999999999999999999999999999999999999999976533 445555788888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000913 399 SDGQIVYQGPRELVL 413 (1226)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1226)
++|++++.|+.+++.
T Consensus 224 ~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 224 HQGEVVERGSTADVL 238 (267)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999988764
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=319.18 Aligned_cols=202 Identities=27% Similarity=0.326 Sum_probs=165.7
Q ss_pred eeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCCCHHHHH
Q 000913 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETL 247 (1226)
Q Consensus 168 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 247 (1226)
|+|+|+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ..+|++|++.+++.+||+||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHH
Confidence 57999999999999999999999999999999999988 9999999998765432 248999999899999999999
Q ss_pred HHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChh
Q 000913 248 AFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGG 327 (1226)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 327 (1226)
.++......... ..+....++.+++.+||++..++.+ ..||||
T Consensus 76 ~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 118 (230)
T TIGR01184 76 ALAVDRVLPDLS--------------------------------KSERRAIVEEHIALVGLTEAADKRP-----GQLSGG 118 (230)
T ss_pred HHHHHhcccCCC--------------------------------HHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHH
Confidence 886321000000 0001123566788999987766654 469999
Q ss_pred HhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEEEec
Q 000913 328 QKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407 (1226)
Q Consensus 328 qrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G 407 (1226)
|||||+||++|+.+|+++||||||+|||+.++..+.+.|+++++..+ .+|+.++|+..++.+++|+|++|++|++++.|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR-VTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhcCEEEEEeCCcEeccc
Confidence 99999999999999999999999999999999999999998765334 45555788888999999999999999999988
Q ss_pred ChhHH
Q 000913 408 PRELV 412 (1226)
Q Consensus 408 ~~~~~ 412 (1226)
+..++
T Consensus 198 ~~~~~ 202 (230)
T TIGR01184 198 QILEV 202 (230)
T ss_pred Cceec
Confidence 65543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=337.19 Aligned_cols=199 Identities=24% Similarity=0.403 Sum_probs=169.1
Q ss_pred ceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCC-------CccceEEEecCCCCCCCCCC
Q 000913 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEF-------VPQRTAAYISQHDNHIGEMT 242 (1226)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 242 (1226)
|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++||+|++.+++.+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 899999999999999999999999999999999998 99999999887432 12467999999999999999
Q ss_pred HHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 000913 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1226)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1226)
|+||+.|+.+... . . +....++.+++.+||++..+..+ .
T Consensus 92 v~enl~~~~~~~~--~-----~-----------------------------~~~~~~~~~l~~~gL~~~~~~~~-----~ 130 (354)
T TIGR02142 92 VRGNLRYGMKRAR--P-----S-----------------------------ERRISFERVIELLGIGHLLGRLP-----G 130 (354)
T ss_pred HHHHHHHHhhccC--h-----h-----------------------------HHHHHHHHHHHHcCChhHhcCCh-----h
Confidence 9999998753210 0 0 01123567889999987776554 4
Q ss_pred CCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCe
Q 000913 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1226)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~ 402 (1226)
.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+..+ ++||.++|+..++..++|+|++|++|+
T Consensus 131 ~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g-~tiiivtH~~~~~~~~~d~i~~l~~G~ 209 (354)
T TIGR02142 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFG-IPILYVSHSLQEVLRLADRVVVLEDGR 209 (354)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 6999999999999999999999999999999999999999999999865334 455567888899999999999999999
Q ss_pred EEEecChhHHH
Q 000913 403 IVYQGPRELVL 413 (1226)
Q Consensus 403 iv~~G~~~~~~ 413 (1226)
+++.|+++++.
T Consensus 210 i~~~g~~~~~~ 220 (354)
T TIGR02142 210 VAAAGPIAEVW 220 (354)
T ss_pred EEEECCHHHHh
Confidence 99999988764
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=321.67 Aligned_cols=230 Identities=20% Similarity=0.273 Sum_probs=179.9
Q ss_pred CCCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcH
Q 000913 112 IDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGK 191 (1226)
Q Consensus 112 ~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGK 191 (1226)
.+.+...++++||++.+. .+++|+|||+++++|++++|+|||||||
T Consensus 14 ~~~~~~~l~~~nl~~~~~----------------------------------~~~il~~vsl~i~~Ge~~~I~G~nGsGK 59 (267)
T PRK14237 14 FPEEEIALSTKDLHVYYG----------------------------------KKEAIKGIDMQFEKNKITALIGPSGSGK 59 (267)
T ss_pred cCCCCeEEEEeeEEEEEC----------------------------------CeeeEeeeEEEEcCCCEEEEECCCCCCH
Confidence 344556799999998762 1249999999999999999999999999
Q ss_pred HHHHHHHhcCCCCC--CCceeEEEEcCccCCCC-----CccceEEEecCCCCCCCCCCHHHHHHHHhHhcCCCchhhHhH
Q 000913 192 TTLLLALAGKLDPT--LKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLT 264 (1226)
Q Consensus 192 STLL~~L~G~~~~~--~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~ 264 (1226)
||||++|+|.++|. ...+|+|.++|.++... ..++.++|++|++.+++ .||+||+.++....+....
T Consensus 60 STLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~----- 133 (267)
T PRK14237 60 STYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDK----- 133 (267)
T ss_pred HHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCH-----
Confidence 99999999998631 01289999999987532 12457999999887776 6999999987532211000
Q ss_pred HHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccCCCChhHhhHHHHHHHHhcCCcc
Q 000913 265 ELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA 344 (1226)
Q Consensus 265 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~v 344 (1226)
++....+..+++.++|.++.+... +..++.||||||||++||++|+.+|++
T Consensus 134 ----------------------------~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrl~laral~~~p~l 184 (267)
T PRK14237 134 ----------------------------KVLDEIVETSLKQAALWDQVKDDL-HKSALTLSGGQQQRLCIARAIAVKPDI 184 (267)
T ss_pred ----------------------------HHHHHHHHHHHHHcCCCchhhhhh-cCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 001123456778888864332222 345668999999999999999999999
Q ss_pred ceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcCCeEEEecChhHHH
Q 000913 345 LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 345 llLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~ 413 (1226)
++|||||+|||+.+...+.+.|+++. .+ ++|+.++|+..++.+++|++++|++|++++.|+.+++.
T Consensus 185 llLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 185 LLMDEPASALDPISTMQLEETMFELK--KN-YTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHh--cC-CEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999874 34 45566778888999999999999999999999988763
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=321.47 Aligned_cols=211 Identities=22% Similarity=0.339 Sum_probs=166.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CceeEEEEcCccCCC--C---CccceEEEecCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDE--F---VPQRTAAYISQHDNHI 238 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~I~~nG~~~~~--~---~~~~~~~yv~Q~d~~~ 238 (1226)
++|+|+|+.|++|++++|+|||||||||||++|+|.++|.. ..+|+|.++|.++.. . ..++.++|++|++.++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (258)
T PRK14241 18 HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPF 97 (258)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccC
Confidence 49999999999999999999999999999999999987410 128999999988642 1 1235799999998899
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 000913 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1226)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1226)
+.+||+||+.++....+.... .+....++.+++.+||........ +
T Consensus 98 ~~~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 143 (258)
T PRK14241 98 PTMSIRDNVVAGLKLNGVRNK---------------------------------KDLDELVEKSLRGANLWNEVKDRL-D 143 (258)
T ss_pred CCCcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhhHh-h
Confidence 999999999887543211000 001123456777888742111111 2
Q ss_pred cccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEE
Q 000913 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1226)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1226)
..+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ +. +||.++|+..++.+++|+|++|
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~-tviivsH~~~~~~~~~d~i~~l 220 (258)
T PRK14241 144 KPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--DY-TIVIVTHNMQQAARVSDQTAFF 220 (258)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CC-EEEEEecCHHHHHHhCCEEEEE
Confidence 34557999999999999999999999999999999999999999999998742 34 5555788888999999999999
Q ss_pred c------CCeEEEecChhHHH
Q 000913 399 S------DGQIVYQGPRELVL 413 (1226)
Q Consensus 399 ~------~G~iv~~G~~~~~~ 413 (1226)
+ +|++++.|+++++.
T Consensus 221 ~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 221 NLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred ecccCCCCceEEecCCHHHHH
Confidence 6 79999999988764
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=326.41 Aligned_cols=218 Identities=22% Similarity=0.391 Sum_probs=175.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++ +++.+|+|+|+++++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEh
Confidence 588899988773 12469999999999999999999999999999999999876 5689999999876
Q ss_pred ChhhhcceeeEeecCCCCC--CCCCHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 000913 935 KQETFARISGYCEQNDIHS--PFVTIYESLLFSAWLRL-SPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1226)
Q Consensus 935 ~~~~~~~~~gyv~Q~~~~~--~~lTv~E~l~f~~~lr~-~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgG 1011 (1226)
.....++.++|++|++.+. ...+++|++.+...... .........++.++++++.++|.+..++.+ ..||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 4332234699999997653 23478888865421100 001111233456788999999988777764 469999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 000913 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1091 (1226)
Q Consensus 1012 qrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G 1091 (1226)
||||++||++|+.+|+||+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|+++++ + |++++.|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeec
Confidence 999999999999999999999999999999999999999999877999999999986 477899999777 4 7999998
Q ss_pred CCC
Q 000913 1092 PLG 1094 (1226)
Q Consensus 1092 ~~~ 1094 (1226)
+..
T Consensus 224 ~~~ 226 (272)
T PRK15056 224 PTE 226 (272)
T ss_pred CHH
Confidence 753
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=320.83 Aligned_cols=215 Identities=24% Similarity=0.319 Sum_probs=174.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCC--c-eEEEEEEEcC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITISG 931 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~-~~~G~i~i~g 931 (1226)
.+.++|+++.++ .+.+|+|+|++|++||++||+|+||||||||+++|+|...+ . +..|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 478899988873 24699999999999999999999999999999999998641 1 2589999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCC
Q 000913 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1226)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 1002 (1226)
.+... ...++.++|++|++.+++ .||+||+.+....+. ....+..++.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRN--- 144 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccC---
Confidence 87532 234567999999988776 799999987643221 1122333456788899998842 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 000913 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1226)
Q Consensus 1003 ~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~ 1082 (1226)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||+++|+++ ++.+.+|++++|+
T Consensus 145 --~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14251 145 --AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLM 220 (251)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 467999999999999999999999999999999999999999999999854 799999999987 4788899999998
Q ss_pred cCcEEEEeCCC
Q 000913 1083 RGGQEIYVGPL 1093 (1226)
Q Consensus 1083 ~Gg~~~y~G~~ 1093 (1226)
+ |+++..|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14251 221 N-GDLIEAGPT 230 (251)
T ss_pred C-CEEEEeCCH
Confidence 6 688888874
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=314.49 Aligned_cols=201 Identities=19% Similarity=0.294 Sum_probs=153.7
Q ss_pred CceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCc
Q 000913 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (1226)
Q Consensus 853 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~ 932 (1226)
|..+-.+||+|.++ +.++++++++|-|.--..+||+||||.||||||++|.|... +..|+.+-|.
T Consensus 584 PPvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~--P~~GE~RKnh- 648 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD--PNDGELRKNH- 648 (807)
T ss_pred CCeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC--CCcchhhccc-
Confidence 44577889988875 45689999999999999999999999999999999999877 4456654331
Q ss_pred cCChhhhcceeeEeecCCC--CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 000913 933 PKKQETFARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1226)
Q Consensus 933 ~~~~~~~~~~~gyv~Q~~~--~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSg 1010 (1226)
+-.+|+..|+.. +-..-|.-|.|.-. .+ .+.+ .....|-.+||...++++- +..|||
T Consensus 649 -------rL~iG~FdQh~~E~L~~Eetp~EyLqr~----FN--lpyq----~ARK~LG~fGL~sHAHTik----ikdLSG 707 (807)
T KOG0066|consen 649 -------RLRIGWFDQHANEALNGEETPVEYLQRK----FN--LPYQ----EARKQLGTFGLASHAHTIK----IKDLSG 707 (807)
T ss_pred -------eeeeechhhhhHHhhccccCHHHHHHHh----cC--CChH----HHHHHhhhhhhhhccceEe----eeecCC
Confidence 234788888643 34455766766421 11 2222 2345778888988887753 568999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 000913 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1226)
Q Consensus 1011 Gqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~ 1090 (1226)
|||-||++|-.-+..|+||||||||++||.++...+-++|+.+ ...||+++||-.. |.+--+.+.++.+.|.---.
T Consensus 708 GQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~i~eId 783 (807)
T KOG0066|consen 708 GQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQGIDEID 783 (807)
T ss_pred cchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCChhhcc
Confidence 9999999999999999999999999999999999999999876 4579999999764 55666778888776654445
Q ss_pred CCC
Q 000913 1091 GPL 1093 (1226)
Q Consensus 1091 G~~ 1093 (1226)
|..
T Consensus 784 GdF 786 (807)
T KOG0066|consen 784 GDF 786 (807)
T ss_pred ccH
Confidence 543
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=315.33 Aligned_cols=201 Identities=25% Similarity=0.306 Sum_probs=182.0
Q ss_pred eEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh---h---h-hcceeeEeecCCCCC
Q 000913 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---E---T-FARISGYCEQNDIHS 953 (1226)
Q Consensus 881 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~---~-~~~~~gyv~Q~~~~~ 953 (1226)
..-++|+|++++.||++.|||-||||||||+++|.++.. +..|+|.++|.++.. . . .++.++.|+|...++
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLl 118 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL 118 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccc
Confidence 457999999999999999999999999999999999887 678999999987532 1 2 345699999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000913 954 PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1033 (1226)
Q Consensus 954 ~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDE 1033 (1226)
|+.||.||..|+..++ .++++++++++.++|+.+||.++.++++ .+||||+||||.|||||+.+|+||+|||
T Consensus 119 PhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~yp-----~eLSGGMqQRVGLARAla~~~~IlLMDE 190 (386)
T COG4175 119 PHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYP-----NELSGGMQQRVGLARALANDPDILLMDE 190 (386)
T ss_pred cchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcCc-----ccccchHHHHHHHHHHHccCCCEEEecC
Confidence 9999999999997776 3678899999999999999999999984 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 000913 1034 PTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1034 PTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
|+|.|||--+..+++-|.++.+ -.+|||++|||.+ |.++.-|||.+|+ +|+++..|.+
T Consensus 191 aFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimk-dG~ivQ~Gtp 249 (386)
T COG4175 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMK-DGEIVQVGTP 249 (386)
T ss_pred chhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEec-CCeEEEeCCH
Confidence 9999999999999999888854 4899999999998 7899999999998 5899999986
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=315.41 Aligned_cols=173 Identities=24% Similarity=0.296 Sum_probs=137.3
Q ss_pred eecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCChhhhcceeeEeecCCCCCCCCCHHHHHH
Q 000913 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLL 963 (1226)
Q Consensus 884 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~ 963 (1226)
|.==.+.|..||+++++||||-||||+.++|+|..+ +.+|. .. .-.++|=||--.-....||++.|.
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik--Pdeg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK--PDEGS----EE-------DLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhcccc--CCCCC----Cc-------cceEeecceeecCCCCCcHHHHHH
Confidence 444467899999999999999999999999999876 44565 11 113678888755556789999776
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 000913 964 FSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1043 (1226)
Q Consensus 964 f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~ 1043 (1226)
-...-+... .-...++++-|.|.++.+..+ .+|||||.|||+||.+|..+.+|.+||||++.||.+.+
T Consensus 424 ~~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFGS-------SYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhccc-------chhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 433221111 123457888999999998875 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEe
Q 000913 1044 AIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1226)
Q Consensus 1044 ~~i~~~l~~~~~-~g~tvi~t~H~p~~~i~~~~D~v~ll~ 1082 (1226)
..+-+.||+... +++|.+++-||..+ +--..||+++..
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 999999999875 47899999999864 445678888875
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=318.83 Aligned_cols=210 Identities=20% Similarity=0.313 Sum_probs=165.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCCC-----ccceEEEecCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEFV-----PQRTAAYISQHDNHI 238 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~I~~nG~~~~~~~-----~~~~~~yv~Q~d~~~ 238 (1226)
.+|+|+|++|++|++++|+|||||||||||++|+|..+|. ...+|+|.++|.++.... .++.++|++|++.++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (251)
T PRK14270 18 QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPF 97 (251)
T ss_pred eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcC
Confidence 4899999999999999999999999999999999998751 013899999999875321 245799999998777
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 000913 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1226)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1226)
+ +||+||+.|.....+.... .+....++.+++.+||....... -+
T Consensus 98 ~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~-~~ 142 (251)
T PRK14270 98 P-MSIYDNVAYGPRIHGIKDK---------------------------------KELDKIVEWALKKAALWDEVKDD-LK 142 (251)
T ss_pred C-CcHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCchhhhhH-hh
Confidence 7 8999999987543221000 00112345567788774211111 12
Q ss_pred cccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEE
Q 000913 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1226)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1226)
..++.|||||||||+||++++.+|++++|||||+|||+.++.++.+.|+++.. +. +|+.++|+..++.+++|+|++|
T Consensus 143 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~-tiiivsH~~~~~~~~~d~v~~l 219 (251)
T PRK14270 143 KSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EY-TIVIVTHNMQQASRVSDYTAFF 219 (251)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CC-eEEEEEcCHHHHHHhcCEEEEE
Confidence 34567999999999999999999999999999999999999999999998753 34 4555777888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000913 399 SDGQIVYQGPRELVL 413 (1226)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1226)
++|++++.|+.+++.
T Consensus 220 ~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 220 LMGDLIEFNKTEKIF 234 (251)
T ss_pred ECCeEEEeCCHHHHh
Confidence 999999999998764
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=319.52 Aligned_cols=215 Identities=24% Similarity=0.299 Sum_probs=173.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCC--C-ceEEEEEEEcC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 931 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-~~~~G~i~i~g 931 (1226)
.+.++|+++.++ .+.+|+|+|+++++||++||+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 478899988764 2469999999999999999999999999999999999743 1 12479999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCC
Q 000913 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1226)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 1002 (1226)
.++.. ...++.++|++|++.+++ .|++||+.+....+.. ...+..++.+.+.++.+++.. ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~--- 145 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHES--- 145 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcC---
Confidence 87531 234567999999988887 6999999886443321 122223345677888887642 22222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 000913 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1226)
Q Consensus 1003 ~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~ 1082 (1226)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||+++|++. ++.+.+|++++|+
T Consensus 146 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14255 146 --ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 467999999999999999999999999999999999999999999999865 589999999987 4778899999998
Q ss_pred cCcEEEEeCCC
Q 000913 1083 RGGQEIYVGPL 1093 (1226)
Q Consensus 1083 ~Gg~~~y~G~~ 1093 (1226)
+ |+++..|+.
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14255 222 T-GNLIEFADT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 6 788888874
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=354.84 Aligned_cols=211 Identities=21% Similarity=0.312 Sum_probs=181.4
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++ ++.+|+|+||++++|+++||+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 488899998874 2469999999999999999999999999999999999876 4689999999875
Q ss_pred Ch---hh-hcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 000913 935 KQ---ET-FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1226)
Q Consensus 935 ~~---~~-~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSg 1010 (1226)
.. .. .++.+||++|++.+++.+||+|++.|... . ..+.++.+.++++.++|.+..+..+ ..|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~--~-----~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP--K-----RQASMQKMKQLLAALGCQLDLDSSA-----GSLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc--c-----chHHHHHHHHHHHHcCCCccccCCh-----hhCCH
Confidence 42 11 23458999999999999999999988531 1 1233456889999999988777764 56999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 000913 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1226)
Q Consensus 1011 Gqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~ 1090 (1226)
||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|++. ++.+.||++++|++ |++++.
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALS 221 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999888999999999986 47789999999986 689999
Q ss_pred CCCC
Q 000913 1091 GPLG 1094 (1226)
Q Consensus 1091 G~~~ 1094 (1226)
|+..
T Consensus 222 g~~~ 225 (510)
T PRK15439 222 GKTA 225 (510)
T ss_pred cChH
Confidence 9864
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=353.84 Aligned_cols=220 Identities=22% Similarity=0.340 Sum_probs=181.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++ ++.+|+||||++++|+++||+||||||||||+++|+|...+++.+|+|.++|.++.
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 56788887763 24699999999999999999999999999999999998753235899999998764
Q ss_pred hh----hhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHHcCCCccc-ccccCCCCCCCCC
Q 000913 936 QE----TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP-EVDSETRKMFIDEVMELVELNPLR-QSLVGLPGVSGLS 1009 (1226)
Q Consensus 936 ~~----~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~-~~~~~~~~~~v~~~l~~l~l~~~~-~~~~g~~~~~~LS 1009 (1226)
.. ..++.+|||+|++.+++.+||+|++.+........ ....++.+++++++++.+++.+.. +.. +..||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCC
Confidence 31 12356999999998889999999998864332111 122334456788999999997654 343 35799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 000913 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1226)
Q Consensus 1010 gGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y 1089 (1226)
|||||||+||++|+.+|+||||||||+|||+.+...+++.|++++++|+|||+++|++. ++.+.||++++|++ |++++
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVA 221 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEee
Confidence 99999999999999999999999999999999999999999999888999999999987 47788999999986 68999
Q ss_pred eCCCCc
Q 000913 1090 VGPLGR 1095 (1226)
Q Consensus 1090 ~G~~~~ 1095 (1226)
.|+...
T Consensus 222 ~~~~~~ 227 (500)
T TIGR02633 222 TKDMST 227 (500)
T ss_pred ecCccc
Confidence 887653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=322.91 Aligned_cols=224 Identities=25% Similarity=0.330 Sum_probs=179.6
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++... ..+. ..++.+|+|+||++++|++++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 4 l~~~nl~~~~~~~~---~~~~-~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG---LSGK-HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc---cccc-cCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 67888888774210 0000 013569999999999999999999999999999999999866 56899999998653
Q ss_pred h------hhhcceeeEeecCC--CCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 000913 936 Q------ETFARISGYCEQND--IHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 1006 (1226)
Q Consensus 936 ~------~~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~ 1006 (1226)
. ...++.++|++|++ .+.+..|+.|++.+..... ......+....++++++.+++. ...+.. +.
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKR-----PP 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCC-----Cc
Confidence 2 12456799999997 3567789999987643211 1123344456789999999996 455554 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 000913 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1226)
Q Consensus 1007 ~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg 1085 (1226)
.||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.++ |.|||+++|++. ++.+.+|++++|++ |
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~-G 228 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDN-G 228 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999998764 899999999986 47778999999985 7
Q ss_pred EEEEeCCCC
Q 000913 1086 QEIYVGPLG 1094 (1226)
Q Consensus 1086 ~~~y~G~~~ 1094 (1226)
++++.|+..
T Consensus 229 ~i~~~g~~~ 237 (268)
T PRK10419 229 QIVETQPVG 237 (268)
T ss_pred EEeeeCChh
Confidence 899998753
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=318.94 Aligned_cols=209 Identities=19% Similarity=0.275 Sum_probs=165.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcC---CCCCCCceeEEEEcCccCCCCC-----ccceEEEecCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK---LDPTLKVSGTVTYNGHDMDEFV-----PQRTAAYISQHDNH 237 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~---~~~~~~~~G~I~~nG~~~~~~~-----~~~~~~yv~Q~d~~ 237 (1226)
++|+|+|+.+++|++++|+|||||||||||++|+|. +++. ..+|+|.++|+++.... .++.++|++|++.+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 95 (250)
T PRK14245 17 HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNP 95 (250)
T ss_pred eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhheEEEecCCcc
Confidence 499999999999999999999999999999999997 3331 12899999999875421 23579999999877
Q ss_pred CCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 000913 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1226)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1226)
++ .||+||+.++.+..+.... + .....++++++.+||.+...+..
T Consensus 96 ~~-~tv~~nl~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~- 140 (250)
T PRK14245 96 FP-KSIFENVAYGLRVNGVKDN-A--------------------------------FIRQRVEETLKGAALWDEVKDKL- 140 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCCCcH-H--------------------------------HHHHHHHHHHHHcCCCcchhhhh-
Confidence 76 6999999887543221000 0 01123466788888864322222
Q ss_pred ccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEE
Q 000913 318 DEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIIL 397 (1226)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iil 397 (1226)
+..+..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++. .+ ++||.++|+..++.+++|+|++
T Consensus 141 ~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiiivtH~~~~~~~~~d~v~~ 217 (250)
T PRK14245 141 KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK--KD-YTIVIVTHNMQQAARVSDKTAF 217 (250)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHhhCCEEEE
Confidence 23455799999999999999999999999999999999999999999999873 34 4555577888899999999999
Q ss_pred EcCCeEEEecChhHHH
Q 000913 398 LSDGQIVYQGPRELVL 413 (1226)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1226)
|++|++++.|+++++.
T Consensus 218 l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 218 FYMGEMVEYDDTKKIF 233 (250)
T ss_pred EECCEEEEECCHHHHh
Confidence 9999999999998874
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=392.60 Aligned_cols=257 Identities=19% Similarity=0.227 Sum_probs=198.0
Q ss_pred hHhhHHHHHHhhhccccChHHHHHHHHHHhh-hcCCC-CC-cceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhH
Q 000913 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRID-RVGID-LP-KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNY 154 (1226)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~-~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 154 (1226)
.+.....+||+.++++.++|. ....+ ....+ -| ..+|+|+||++.|..
T Consensus 1199 ~e~~~~sveRi~e~~~~~~E~-----~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~------------------------ 1249 (1622)
T PLN03130 1199 AENSLNAVERVGTYIDLPSEA-----PLVIENNRPPPGWPSSGSIKFEDVVLRYRP------------------------ 1249 (1622)
T ss_pred HHHHHHHHHHHHHHhCCCCcc-----cccccCCCCCCCCCCCCcEEEEEEEEEeCC------------------------
Confidence 367788899999988766551 00000 00011 12 357999999999842
Q ss_pred hhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEe
Q 000913 155 LRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYI 231 (1226)
Q Consensus 155 ~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv 231 (1226)
...++|+|||++|+|||.+||+|++|||||||+++|.|+++|+ +|+|++||.++.+... |+.++||
T Consensus 1250 --------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~---~G~I~IDG~dI~~i~l~~LR~~IsiV 1318 (1622)
T PLN03130 1250 --------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE---RGRILIDGCDISKFGLMDLRKVLGII 1318 (1622)
T ss_pred --------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCEecccCCHHHHHhccEEE
Confidence 1124999999999999999999999999999999999999998 9999999999987754 4789999
Q ss_pred cCCCCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccc
Q 000913 232 SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311 (1226)
Q Consensus 232 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1226)
||++.+|. .||||||.++.. ...+.+.+++++... +.. +..|+..
T Consensus 1319 pQdp~LF~-GTIreNLd~~~~-----~tdeei~~Al~~a~l---------------------------~~~--I~~lp~G 1363 (1622)
T PLN03130 1319 PQAPVLFS-GTVRFNLDPFNE-----HNDADLWESLERAHL---------------------------KDV--IRRNSLG 1363 (1622)
T ss_pred CCCCcccc-ccHHHHhCcCCC-----CCHHHHHHHHHHcCc---------------------------HHH--HHhCccc
Confidence 99887665 699999986431 122333333322110 111 2246778
Q ss_pred ccccccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhh
Q 000913 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (1226)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~ 391 (1226)
.||.||+.+. .||||||||++|||||+++|+||+||||||+||+.|...|.+.|++.. .++|+ |++.|.. ++...
T Consensus 1364 Ldt~Vge~G~-nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~--~~~Tv-I~IAHRL-~tI~~ 1438 (1622)
T PLN03130 1364 LDAEVSEAGE-NFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTM-LIIAHRL-NTIID 1438 (1622)
T ss_pred cCccccCCCC-CCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEE-EEEeCCh-HHHHh
Confidence 8999998665 599999999999999999999999999999999999999999999753 34454 4455544 55667
Q ss_pred cCcEEEEcCCeEEEecChhHHHH
Q 000913 392 FDDIILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 392 ~D~iilL~~G~iv~~G~~~~~~~ 414 (1226)
+|+|++|++|+|+++|+++++++
T Consensus 1439 ~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1439 CDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred CCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999874
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=353.51 Aligned_cols=216 Identities=27% Similarity=0.337 Sum_probs=181.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++ ++.+|+||||++++|++++|+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 377889988773 2469999999999999999999999999999999999876 4689999999875
Q ss_pred Ch----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 000913 935 KQ----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLST 1010 (1226)
Q Consensus 935 ~~----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSg 1010 (1226)
.. ..+++.+||++|++.+++.+||+||+.+..........+..+.+++++++++.++|.+..+.. +..|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-----LKYLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-----hhhCCH
Confidence 32 224567999999998889999999999853211111123344456788999999998766665 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 000913 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090 (1226)
Q Consensus 1011 Gqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~ 1090 (1226)
||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|++. ++.+.||++++|++ |+++..
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVAT 221 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999878999999999987 47788999999986 688776
Q ss_pred CC
Q 000913 1091 GP 1092 (1226)
Q Consensus 1091 G~ 1092 (1226)
++
T Consensus 222 ~~ 223 (501)
T PRK11288 222 FD 223 (501)
T ss_pred cC
Confidence 65
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=360.38 Aligned_cols=257 Identities=22% Similarity=0.346 Sum_probs=190.5
Q ss_pred hHhhHHHHHHhhhccccChHHHHHHHHHHhhhcCCCCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhhh
Q 000913 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRI 157 (1226)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 157 (1226)
.+++...++|+.++.+.+++ ..+..+....+.+..+++|+||++.++.
T Consensus 299 ~~~~~~~~~ri~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~v~~~y~~--------------------------- 346 (585)
T TIGR01192 299 IFEARAKLEDFFDLEDSVFQ-----REEPADAPELPNVKGAVEFRHITFEFAN--------------------------- 346 (585)
T ss_pred HHHHHHHHHHHHHHHcCCcc-----ccCCccCCCCCCCCCeEEEEEEEEECCC---------------------------
Confidence 45666777777777665433 1100010111122346999999998731
Q ss_pred cCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCC
Q 000913 158 IPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQH 234 (1226)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~ 234 (1226)
+ .++|+|+|+.+++|+.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|+
T Consensus 347 ---~---~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 417 (585)
T TIGR01192 347 ---S---SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDINTVTRESLRKSIATVFQD 417 (585)
T ss_pred ---C---CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC---CCEEEECCEEhhhCCHHHHHhheEEEccC
Confidence 1 23899999999999999999999999999999999999998 9999999998876543 4689999998
Q ss_pred CCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccc
Q 000913 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314 (1226)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1226)
+.++ +.|++|||.++.. ....+...++++.. + .+.. ...++...||
T Consensus 418 ~~lf-~~ti~~Ni~~~~~----~~~~~~~~~a~~~~---~------------------------~~~~--i~~l~~g~~t 463 (585)
T TIGR01192 418 AGLF-NRSIRENIRLGRE----GATDEEVYEAAKAA---A------------------------AHDF--ILKRSNGYDT 463 (585)
T ss_pred CccC-cccHHHHHhcCCC----CCCHHHHHHHHHHh---C------------------------cHHH--HHhccccccc
Confidence 7665 5799999988631 11111122211110 0 0111 2235667789
Q ss_pred cccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCc
Q 000913 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1226)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1226)
.+|+.+ ..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++.. .++|+|+ ++|.... ...+|+
T Consensus 464 ~~~~~~-~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~-isH~~~~-~~~~d~ 538 (585)
T TIGR01192 464 LVGERG-NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFI-IAHRLST-VRNADL 538 (585)
T ss_pred hhcCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEE-EEcChHH-HHcCCE
Confidence 998764 4699999999999999999999999999999999999999999998753 3556555 5555444 467999
Q ss_pred EEEEcCCeEEEecChhHHHH
Q 000913 395 IILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 395 iilL~~G~iv~~G~~~~~~~ 414 (1226)
|++|++|+++..|+++++.+
T Consensus 539 i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 539 VLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred EEEEECCEEEEECCHHHHHH
Confidence 99999999999999998864
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=318.62 Aligned_cols=211 Identities=21% Similarity=0.307 Sum_probs=166.9
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCceeEEEEcCccCCCC-----CccceEEEecCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1226)
.+|+|+|+.|++|++++|+|||||||||||++|+|.++ |+...+|+|.++|.++... ..++.++|++|+..++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (252)
T PRK14256 18 HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPF 97 (252)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCC
Confidence 49999999999999999999999999999999999986 3111289999999887432 1246799999998899
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 000913 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1226)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1226)
+.+||+||+.++.+..+.... + +....++.+++.+|+........ +
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 143 (252)
T PRK14256 98 PAMSIYDNVIAGYKLNGRVNR-S--------------------------------EADEIVESSLKRVALWDEVKDRL-K 143 (252)
T ss_pred CcCcHHHHHHhHHHhcCCCCH-H--------------------------------HHHHHHHHHHHHcCCchhhhHHh-h
Confidence 999999999876532210000 0 01123456777888754211111 1
Q ss_pred cccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEE
Q 000913 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1226)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1226)
..+..|||||||||+||++|+.+|++++|||||+|||..+...+.+.|+++.. + ++||.++|+..++.+++|++++|
T Consensus 144 ~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~i~~l 220 (252)
T PRK14256 144 SNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--K-YTIIIVTHNMQQAARVSDYTAFF 220 (252)
T ss_pred CCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--C-CcEEEEECCHHHHHhhCCEEEEE
Confidence 34557999999999999999999999999999999999999999999999753 3 45566778888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000913 399 SDGQIVYQGPRELVL 413 (1226)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1226)
++|++++.|+.+++.
T Consensus 221 ~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 221 YMGDLVECGETKKIF 235 (252)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988763
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=319.99 Aligned_cols=206 Identities=25% Similarity=0.383 Sum_probs=167.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCcc-----CCCCCc-------cceEEEecC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD-----MDEFVP-------QRTAAYISQ 233 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~-----~~~~~~-------~~~~~yv~Q 233 (1226)
.+|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.+ +..... ++.++|++|
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q 96 (258)
T PRK11701 20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQ 96 (258)
T ss_pred eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEEee
Confidence 4999999999999999999999999999999999999998 9999999987 654322 246999999
Q ss_pred CC--CCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc-
Q 000913 234 HD--NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV- 310 (1226)
Q Consensus 234 ~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~- 310 (1226)
++ .+++.+|+.||+.+.....+.. .. .+....++++++.+|+..
T Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~~--------------------------------~~~~~~~~~~l~~~~l~~~ 143 (258)
T PRK11701 97 HPRDGLRMQVSAGGNIGERLMAVGAR-HY--------------------------------GDIRATAGDWLERVEIDAA 143 (258)
T ss_pred CcccccCccccHHHHHHHHHHHhccC-cH--------------------------------HHHHHHHHHHHHHcCCChh
Confidence 86 3677889999997643211100 00 001123566788999963
Q ss_pred cccccccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHh
Q 000913 311 CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390 (1226)
Q Consensus 311 ~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~ 390 (1226)
..++. +..|||||||||+|||+|+.+|++|||||||+|||+.+...+.+.|+++.. ..+.+||.++|+..++.+
T Consensus 144 ~~~~~-----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~isH~~~~~~~ 217 (258)
T PRK11701 144 RIDDL-----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVR-ELGLAVVIVTHDLAVARL 217 (258)
T ss_pred HHhCC-----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCcEEEEEeCCHHHHHH
Confidence 44443 456999999999999999999999999999999999999999999998765 334556667888899999
Q ss_pred hcCcEEEEcCCeEEEecChhHHH
Q 000913 391 LFDDIILLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 391 ~~D~iilL~~G~iv~~G~~~~~~ 413 (1226)
.+|+|++|++|++++.|+++++.
T Consensus 218 ~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 218 LAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred hcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999988763
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=318.22 Aligned_cols=208 Identities=19% Similarity=0.277 Sum_probs=166.4
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC---CCCCceeEEEEcCccCCCCC---ccceEEEecCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD---PTLKVSGTVTYNGHDMDEFV---PQRTAAYISQHDNHIG 239 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~---~~~~~~G~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~ 239 (1226)
.+|+|+|+++++|++++|+||||||||||+++|+|.++ |+ +|+|+++|+++.... .++.++|++|++.+++
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~ 92 (246)
T PRK14269 16 QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKI---DGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV 92 (246)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCC---ceEEEECCEecccCCHHHHhhhEEEEecCCcccc
Confidence 49999999999999999999999999999999999975 45 899999999876532 2457999999987776
Q ss_pred CCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 000913 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1226)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1226)
.||+||+.++...++.... .......++.+++.+||........ ++
T Consensus 93 -~tv~eni~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-~~ 138 (246)
T PRK14269 93 -KSIYENISYAPKLHGMIKN--------------------------------KDEEEALVVDCLQKVGLFEEVKDKL-KQ 138 (246)
T ss_pred -ccHHHHhhhHHhhcCcccC--------------------------------hHHHHHHHHHHHHHcCCChhhhHHh-cC
Confidence 6999999986543221000 0001123456788888853211111 23
Q ss_pred ccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEc
Q 000913 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1226)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1226)
..+.|||||||||+|||+|+.+|++++|||||+|||+.+...+.+.|+++. .+ ++|+.++|+..++.+++|+|++|+
T Consensus 139 ~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~~-~tiii~tH~~~~~~~~~d~i~~l~ 215 (246)
T PRK14269 139 NALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS--HN-LSMIMVTHNMQQGKRVADYTAFFH 215 (246)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh--CC-CEEEEEecCHHHHHhhCcEEEEEE
Confidence 456799999999999999999999999999999999999999999999874 24 455667888889999999999999
Q ss_pred CCeEEEecChhHHH
Q 000913 400 DGQIVYQGPRELVL 413 (1226)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1226)
+|++++.|+.+++.
T Consensus 216 ~G~i~~~g~~~~~~ 229 (246)
T PRK14269 216 LGELIEFGESKEFF 229 (246)
T ss_pred CCEEEEECCHHHHH
Confidence 99999999988763
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=322.34 Aligned_cols=216 Identities=19% Similarity=0.231 Sum_probs=175.4
Q ss_pred CceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCc---eEEEEEEE
Q 000913 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITI 929 (1226)
Q Consensus 853 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i 929 (1226)
+..+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..... +.+|+|.+
T Consensus 18 ~~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 84 (274)
T PRK14265 18 HSVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLY 84 (274)
T ss_pred CceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEE
Confidence 33688999998874 246999999999999999999999999999999999975321 24799999
Q ss_pred cCccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCc----cccccc
Q 000913 930 SGYPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLV 1000 (1226)
Q Consensus 930 ~g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~ 1000 (1226)
+|.++.. ..+++.++|++|++.+++. ||.||+.+....+. .. ...++.+.++++.+++.. ..+..
T Consensus 85 ~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~- 158 (274)
T PRK14265 85 RDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLKEK- 158 (274)
T ss_pred CCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhcCC-
Confidence 9987531 2345679999999887764 99999988643321 11 122344677888888742 22332
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEE
Q 000913 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1080 (1226)
Q Consensus 1001 g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~l 1080 (1226)
+..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++
T Consensus 159 ----~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~ 232 (274)
T PRK14265 159 ----GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAF 232 (274)
T ss_pred ----cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEE
Confidence 467999999999999999999999999999999999999999999999865 799999999987 58889999999
Q ss_pred Ee--------cCcEEEEeCCC
Q 000913 1081 MK--------RGGQEIYVGPL 1093 (1226)
Q Consensus 1081 l~--------~Gg~~~y~G~~ 1093 (1226)
|+ +.|++++.|+.
T Consensus 233 l~~~~~~~~~~~G~~~~~g~~ 253 (274)
T PRK14265 233 FNTEIDEYGKRRGKLVEFSPT 253 (274)
T ss_pred EecccccccccCceEEEeCCH
Confidence 97 25899999986
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=354.30 Aligned_cols=213 Identities=27% Similarity=0.411 Sum_probs=178.0
Q ss_pred CceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCc
Q 000913 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (1226)
Q Consensus 853 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~ 932 (1226)
...++++||+|.|+. +++.+|+|+|++++||+.+||+|+||||||||+++|+|... +.+|+|.+||.
T Consensus 453 ~~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~--p~~G~I~idg~ 519 (694)
T TIGR01846 453 RGAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT--PQHGQVLVDGV 519 (694)
T ss_pred CCeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCE
Confidence 346999999999852 22458999999999999999999999999999999999876 56899999999
Q ss_pred cCCh---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCC
Q 000913 933 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGL 1002 (1226)
Q Consensus 933 ~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~ 1002 (1226)
++.+ ..+++.++||+|++.+++ .|++||+.++. ++.+. +.+.++++..++.+. .|+.+|.
T Consensus 520 ~i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~-----~~~~~----~~i~~a~~~~~l~~~i~~lp~gl~t~i~~ 589 (694)
T TIGR01846 520 DLAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN-----PGAPF----EHVIHAAKLAGAHDFISELPQGYNTEVGE 589 (694)
T ss_pred ehhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC-----CCCCH----HHHHHHHHHcChHHHHHhCcCccCcEecC
Confidence 8653 457788999999988876 59999998641 12222 346677777776554 3445555
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 000913 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1226)
Q Consensus 1003 ~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~ 1082 (1226)
. ..+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +|+|+|+++|+++ ..+.+|++++|+
T Consensus 590 ~-g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~ 665 (694)
T TIGR01846 590 K-GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLE 665 (694)
T ss_pred C-CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEe
Confidence 4 46899999999999999999999999999999999999999999999984 5899999999986 456799999998
Q ss_pred cCcEEEEeCCC
Q 000913 1083 RGGQEIYVGPL 1093 (1226)
Q Consensus 1083 ~Gg~~~y~G~~ 1093 (1226)
+ |+++..|+.
T Consensus 666 ~-G~i~~~g~~ 675 (694)
T TIGR01846 666 K-GQIAESGRH 675 (694)
T ss_pred C-CEEEEeCCH
Confidence 6 799999974
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=323.57 Aligned_cols=209 Identities=25% Similarity=0.394 Sum_probs=162.5
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh
Q 000913 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1226)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1226)
+++|+++.++. +.+.+|+|+|+++++||+++|+|+||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 68 (237)
T cd03252 2 TFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLAL 68 (237)
T ss_pred EEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHh
Confidence 56778777631 12458999999999999999999999999999999999876 468999999986532
Q ss_pred ---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHH-----HHHHHHHHHc--CCCcccccccCCCCCC
Q 000913 937 ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRK-----MFIDEVMELV--ELNPLRQSLVGLPGVS 1006 (1226)
Q Consensus 937 ---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~-----~~v~~~l~~l--~l~~~~~~~~g~~~~~ 1006 (1226)
..+++.++|++|++.+++ .||.||+.+... ........ ...++.++.+ ++....+.. +.
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~ 137 (237)
T cd03252 69 ADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ-----GA 137 (237)
T ss_pred cCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcC-----CC
Confidence 334567999999987765 699999987421 11111110 0112233333 333222222 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 000913 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1226)
Q Consensus 1007 ~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~ 1086 (1226)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||+++|++.. + +.+|++++|++ |+
T Consensus 138 ~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~-~-~~~d~v~~l~~-G~ 213 (237)
T cd03252 138 GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLST-V-KNADRIIVMEK-GR 213 (237)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-HhCCEEEEEEC-CE
Confidence 799999999999999999999999999999999999999999999986 48999999999873 4 56999999986 78
Q ss_pred EEEeCCC
Q 000913 1087 EIYVGPL 1093 (1226)
Q Consensus 1087 ~~y~G~~ 1093 (1226)
+++.|+.
T Consensus 214 i~~~~~~ 220 (237)
T cd03252 214 IVEQGSH 220 (237)
T ss_pred EEEEcCH
Confidence 9999874
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=316.70 Aligned_cols=209 Identities=22% Similarity=0.347 Sum_probs=170.2
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEc
Confidence 478899988763 2469999999999999999999999999999999999865 5689999999765
Q ss_pred Ch---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCH
Q 000913 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVSGLST 1010 (1226)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~~LSg 1010 (1226)
.. ..+++.++|++|++.+++ .||+||+.+....+.. . ..++.++++++.+++. ...+.. +..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---Q--PDPAIFLDDLERFALPDTILTKN-----IAELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---C--hHHHHHHHHHHHcCCChHHhcCC-----cccCCH
Confidence 32 234567899999988876 4999999885433221 1 1134577899999995 355554 357999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 000913 1011 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1226)
Q Consensus 1011 Gqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y 1089 (1226)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|.|||+++|+++. + +.+|++++|.+.+..+.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i~~l~~~~~~~~ 218 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKVITLQPHAGEMQ 218 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEEEEEecccchHh
Confidence 999999999999999999999999999999999999999999875 48999999999863 4 56999999964443343
Q ss_pred eC
Q 000913 1090 VG 1091 (1226)
Q Consensus 1090 ~G 1091 (1226)
.|
T Consensus 219 ~~ 220 (225)
T PRK10247 219 EA 220 (225)
T ss_pred hh
Confidence 33
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=324.19 Aligned_cols=213 Identities=22% Similarity=0.270 Sum_probs=174.4
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCC---ceEEEEEEEcC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGNITISG 931 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~g 931 (1226)
.++++++++.+. ++.+|+|+||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 588999988773 24699999999999999999999999999999999998642 13589999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCC
Q 000913 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGL 1002 (1226)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~ 1002 (1226)
.++.. ..+++.++|++|++.+++. ||+||+.+....+. ... ..++.++++++.+++.+ ..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~--- 177 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS--- 177 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC---
Confidence 87531 2346679999999887775 99999988654332 122 23456889999999853 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEE-EE
Q 000913 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF-LM 1081 (1226)
Q Consensus 1003 ~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~-ll 1081 (1226)
+..|||||||||+||++|+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|+++ +|
T Consensus 178 --~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l 253 (285)
T PRK14254 178 --GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFL 253 (285)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEe
Confidence 457999999999999999999999999999999999999999999999976 489999999986 4777899975 56
Q ss_pred ecCcEEEEeCCC
Q 000913 1082 KRGGQEIYVGPL 1093 (1226)
Q Consensus 1082 ~~Gg~~~y~G~~ 1093 (1226)
++ |+++..|+.
T Consensus 254 ~~-G~i~~~g~~ 264 (285)
T PRK14254 254 TG-GELVEFDDT 264 (285)
T ss_pred eC-CEEEEeCCH
Confidence 65 789988874
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=365.36 Aligned_cols=210 Identities=24% Similarity=0.401 Sum_probs=176.2
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000913 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1226)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1226)
..++|+||++.++ +++.+|+|+|++++||+++||+|+||||||||+++|+|.. + .+|+|.+||.+
T Consensus 348 ~~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEe
Confidence 3699999986543 1246899999999999999999999999999999999987 3 47999999987
Q ss_pred CCh---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCC
Q 000913 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGLP 1003 (1226)
Q Consensus 934 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~ 1003 (1226)
+.+ ..+++.++||+|++.++. -|++||+.++. ++.++ +.++++++..++.+. .|+.+|..
T Consensus 413 i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~-----~~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 413 LRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN-----PDASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC-----CCCCH----HHHHHHHHHhCHHHHHHhcccccccccccC
Confidence 643 567888999999998886 59999998852 22333 346777777777653 35566665
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 000913 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1226)
Q Consensus 1004 ~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~ 1083 (1226)
| ..||||||||++|||||+++|+||+||||||+||+++++.|++.|+++. +++|+|+++|+++ ..+.+|++++|++
T Consensus 483 G-~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~ 558 (588)
T PRK11174 483 A-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQD 558 (588)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeC
Confidence 3 5799999999999999999999999999999999999999999999885 5899999999985 5678999999986
Q ss_pred CcEEEEeCCC
Q 000913 1084 GGQEIYVGPL 1093 (1226)
Q Consensus 1084 Gg~~~y~G~~ 1093 (1226)
|+++..|+.
T Consensus 559 -G~i~e~G~~ 567 (588)
T PRK11174 559 -GQIVQQGDY 567 (588)
T ss_pred -CeEeecCCH
Confidence 799988873
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=317.67 Aligned_cols=202 Identities=23% Similarity=0.273 Sum_probs=165.2
Q ss_pred EeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC----CCCceeEEEEcCccCCCCCc-cceEEEecCCCC--CCC
Q 000913 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP----TLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDN--HIG 239 (1226)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~----~~~~~G~I~~nG~~~~~~~~-~~~~~yv~Q~d~--~~~ 239 (1226)
+|+|+|+.+++|++++|+||||||||||+++|+|.++| + +|+|.++|.++..... ++.++||+|++. +.+
T Consensus 18 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~---~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~ 94 (254)
T PRK10418 18 LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT---AGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNP 94 (254)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCc---CCEEEECCeeccccccccceEEEEecCCccccCc
Confidence 89999999999999999999999999999999999988 6 9999999998754322 257999999864 446
Q ss_pred CCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc---cccccc
Q 000913 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV---CADTMV 316 (1226)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~---~~dt~v 316 (1226)
.+|+.+++.+.+...+... ....+..+++.+||.+ ..++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-- 136 (254)
T PRK10418 95 LHTMHTHARETCLALGKPA------------------------------------DDATLTAALEAVGLENAARVLKL-- 136 (254)
T ss_pred cccHHHHHHHHHHHcCCCh------------------------------------HHHHHHHHHHHcCCCChhhhhhc--
Confidence 6899999876443221100 0023456788889875 2333
Q ss_pred cccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEE
Q 000913 317 GDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1226)
Q Consensus 317 g~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ii 396 (1226)
.+..|||||||||+||+||+.+|++|||||||+|||+.+...+.+.|+++++. .+++|+.++|+..++.+++|+++
T Consensus 137 ---~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~-~g~til~~sH~~~~~~~~~d~v~ 212 (254)
T PRK10418 137 ---YPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQK-RALGMLLVTHDMGVVARLADDVA 212 (254)
T ss_pred ---CCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhCCEEE
Confidence 34579999999999999999999999999999999999999999999987653 34455567788888999999999
Q ss_pred EEcCCeEEEecChhHHH
Q 000913 397 LLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1226)
+|++|++++.|+.+++.
T Consensus 213 ~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 213 VMSHGRIVEQGDVETLF 229 (254)
T ss_pred EEECCEEEEecCHHHHh
Confidence 99999999999988764
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=319.17 Aligned_cols=210 Identities=20% Similarity=0.311 Sum_probs=164.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCceeEEEEcCccCCCC-----CccceEEEecCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1226)
.+|+|+|++|++|++++|+|||||||||||++|+|.++ |+...+|+|+++|.++... ..++.++|++|++.++
T Consensus 26 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 105 (259)
T PRK14274 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPF 105 (259)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccc
Confidence 49999999999999999999999999999999999987 3212389999999987431 1235799999998777
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 000913 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1226)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1226)
+. ||+||+.|.....+..... +....++.+++.+|+.+...... +
T Consensus 106 ~~-tv~enl~~~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~l~~~~~~~l-~ 150 (259)
T PRK14274 106 PQ-SIFDNVAYGPRIHGTKNKK---------------------------------KLQEIVEKSLKDVALWDEVKDRL-H 150 (259)
T ss_pred cc-CHHHHHHhHHHhcCCCCHH---------------------------------HHHHHHHHHHHHcCCchhhhhhh-h
Confidence 75 9999998865432210000 01123455677778753211111 2
Q ss_pred cccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEE
Q 000913 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1226)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1226)
...+.||||||||++||++|+.+|+++||||||+|||+.++..+.+.|+++. .+. +||.++|+..++.+++|++++|
T Consensus 151 ~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~-tiiivtH~~~~~~~~~d~i~~l 227 (259)
T PRK14274 151 TQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK--EKY-TIVIVTHNMQQAARVSDQTAFF 227 (259)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh--cCC-EEEEEEcCHHHHHHhCCEEEEE
Confidence 3455799999999999999999999999999999999999999999999874 244 4555777888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000913 399 SDGQIVYQGPRELVL 413 (1226)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1226)
++|+++.+|+++++.
T Consensus 228 ~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 228 YMGELVECNDTNKMF 242 (259)
T ss_pred ECCEEEEECCHHHHh
Confidence 999999999998764
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=351.91 Aligned_cols=206 Identities=25% Similarity=0.333 Sum_probs=174.3
Q ss_pred eEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh----hhhcceeeEeecCCCCCCCC
Q 000913 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQNDIHSPFV 956 (1226)
Q Consensus 881 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~~~~~l 956 (1226)
+.+|+||||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++.+++.+
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 469999999999999999999999999999999999876 468999999987532 22346799999999888899
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000913 957 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1036 (1226)
Q Consensus 957 Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTs 1036 (1226)
||+||+.+..........+.++..+.++++++.+++.+..+..+ ..|||||||||+||++|+.+|++|||||||+
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt~ 163 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 99999987532111111123344567889999999987777663 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCCc
Q 000913 1037 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGR 1095 (1226)
Q Consensus 1037 gLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~~~ 1095 (1226)
|||+.++..+++.|++++++|+|||+++|++. ++.+.||++++|++ |+++..|+...
T Consensus 164 ~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 220 (491)
T PRK10982 164 SLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLAG 220 (491)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChhh
Confidence 99999999999999999888999999999986 57788999999986 79999998643
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=309.10 Aligned_cols=179 Identities=26% Similarity=0.332 Sum_probs=151.5
Q ss_pred ceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh-----hhhcceeeEeecCCC-CC
Q 000913 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-----ETFARISGYCEQNDI-HS 953 (1226)
Q Consensus 880 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~-~~ 953 (1226)
++.+|+|||++|++||++||+||||||||||+++|+|... +.+|+|.++|.+... ..+++.++|++|++. ..
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 3469999999999999999999999999999999999876 468999999987531 134567999999973 23
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000913 954 PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1033 (1226)
Q Consensus 954 ~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDE 1033 (1226)
...||+||+.+..... ..+.++..+.++++++.++|.+..++.+ ..||||||||++||++|+.+|++|+|||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3479999999865332 1233444566889999999988777763 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Q 000913 1034 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1068 (1226)
Q Consensus 1034 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~ 1068 (1226)
||+|||+.++..+.+.|+++.++|+|||+++|++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999877999999999975
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=317.63 Aligned_cols=210 Identities=21% Similarity=0.342 Sum_probs=165.2
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCC-----CccceEEEecCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1226)
.+|+|+|+.+++|++++|+|||||||||||++|+|.+++. ...+|+|.++|.++... ..++.++|++|++.++
T Consensus 17 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14262 17 KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPF 96 (250)
T ss_pred eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccC
Confidence 4899999999999999999999999999999999998741 01289999999887532 1246799999998777
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 000913 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1226)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1226)
+ +||+||+.++....+.... + .....++.+++.+|+....+.. .+
T Consensus 97 ~-~tv~e~l~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~~~~~-~~ 141 (250)
T PRK14262 97 P-MSIYDNVAFGPRIHGVKSK-H--------------------------------KLDRIVEESLKKAALWDEVKSE-LN 141 (250)
T ss_pred c-ccHHHHHHHHHHHcCCCcH-H--------------------------------HHHHHHHHHHHHcCCCchhHHH-Hh
Confidence 7 8999999986533211000 0 0011245567777775321111 23
Q ss_pred cccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEE
Q 000913 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1226)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1226)
..+.+||||||||++||+||+.+|++++|||||+|||..+...+.+.|+++.. + ++|+.++|+..++.+++|+|++|
T Consensus 142 ~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tili~sH~~~~~~~~~d~i~~l 218 (250)
T PRK14262 142 KPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--N-YTIVIVTHNIGQAIRIADYIAFM 218 (250)
T ss_pred CChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--C-cEEEEEeCCHHHHHHhCCEEEEE
Confidence 44567999999999999999999999999999999999999999999998742 4 45566778888899999999999
Q ss_pred cCCeEEEecChhHHH
Q 000913 399 SDGQIVYQGPRELVL 413 (1226)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1226)
++|+++..|+.+++.
T Consensus 219 ~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 219 YRGELIEYGPTREIV 233 (250)
T ss_pred ECCEEEEecCHHHHH
Confidence 999999999988764
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=322.24 Aligned_cols=215 Identities=21% Similarity=0.216 Sum_probs=173.7
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCC--C-ceEEEEEEEcC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGNITISG 931 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-~~~~G~i~i~g 931 (1226)
.+.++|+++.++ ++.+|+|+|++|++|+++||+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 588999998874 2358999999999999999999999999999999999754 1 13689999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCC----cccccccCC
Q 000913 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN----PLRQSLVGL 1002 (1226)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~~g~ 1002 (1226)
.++.. ..+++.++|++|++.+++ .||+||+.+....+. ..+.+..++.+.++++.+++. +..+..
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--- 164 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDN--- 164 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcC---
Confidence 87631 234567999999988777 499999998653321 112222344567777777543 222332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 000913 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1226)
Q Consensus 1003 ~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~ 1082 (1226)
+..||||||||++||++|+.+|+||+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.+|++++|+
T Consensus 165 --~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~ 240 (271)
T PRK14238 165 --AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFL 240 (271)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 467999999999999999999999999999999999999999999999865 799999999987 4778899999998
Q ss_pred cCcEEEEeCCC
Q 000913 1083 RGGQEIYVGPL 1093 (1226)
Q Consensus 1083 ~Gg~~~y~G~~ 1093 (1226)
+ |++++.|+.
T Consensus 241 ~-G~i~~~g~~ 250 (271)
T PRK14238 241 N-GYVNEYDDT 250 (271)
T ss_pred C-CEEEEeCCH
Confidence 6 689998874
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=317.92 Aligned_cols=220 Identities=25% Similarity=0.316 Sum_probs=175.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++++++.++ ++.+|+|||+++++||++||+|+||||||||+++|+|.....+..|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 478899988763 2469999999999999999999999999999999999621124689999999875
Q ss_pred Ch---hhhcc-eeeEeecCCCCCCCCCHHHHHHHHHHhhcC----CCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCC
Q 000913 935 KQ---ETFAR-ISGYCEQNDIHSPFVTIYESLLFSAWLRLS----PEVDSETRKMFIDEVMELVELN-PLRQSLVGLPGV 1005 (1226)
Q Consensus 935 ~~---~~~~~-~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~----~~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~ 1005 (1226)
.. ....+ .++|++|++.+++.+|+.|++.+....... ......+..+.+.++++.+++. ...+..++
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 43 12223 478999999999999999998875432110 1112223345678899999996 34554432
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-cCeEEEEecC
Q 000913 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRG 1084 (1226)
Q Consensus 1006 ~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~-~D~v~ll~~G 1084 (1226)
..|||||||||+||++|+.+|+||+|||||+|||+.++..+++.|+++.++|+|||+++|+++. +... +|++++|++
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~i~~l~~- 227 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDYVHVMQN- 227 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCEEEEEeC-
Confidence 2499999999999999999999999999999999999999999999998779999999999863 5555 899999985
Q ss_pred cEEEEeCCC
Q 000913 1085 GQEIYVGPL 1093 (1226)
Q Consensus 1085 g~~~y~G~~ 1093 (1226)
|++++.|+.
T Consensus 228 G~i~~~~~~ 236 (252)
T CHL00131 228 GKIIKTGDA 236 (252)
T ss_pred CEEEEecCh
Confidence 799999975
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=317.10 Aligned_cols=210 Identities=21% Similarity=0.348 Sum_probs=164.4
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCceeEEEEcCccCCCC-----CccceEEEecCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1226)
.+|+|+|+.+++|++++|+|||||||||||++|+|..+ |+...+|+|.++|+++... ..++.++||+|++.++
T Consensus 19 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 98 (252)
T PRK14239 19 KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPF 98 (252)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccC
Confidence 49999999999999999999999999999999999853 4212389999999887431 1245799999988777
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 000913 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1226)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1226)
+ +||+||+.++....+.... + .....++.+++.+++.....+.. +
T Consensus 99 ~-~tv~enl~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 143 (252)
T PRK14239 99 P-MSIYENVVYGLRLKGIKDK-Q--------------------------------VLDEAVEKSLKGASIWDEVKDRL-H 143 (252)
T ss_pred c-CcHHHHHHHHHHHcCCCcH-H--------------------------------HHHHHHHHHHHHcCCchhHHHHH-h
Confidence 6 8999999987543221000 0 00122445677777643211111 2
Q ss_pred cccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEE
Q 000913 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1226)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1226)
+.+..|||||||||+||++|+.+|++|||||||+|||..+...+.+.|+++.+ + ++|+.++|+..++.+.+|+|++|
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l 220 (252)
T PRK14239 144 DSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--D-YTMLLVTRSMQQASRISDRTGFF 220 (252)
T ss_pred cCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--C-CeEEEEECCHHHHHHhCCEEEEE
Confidence 34567999999999999999999999999999999999999999999998743 3 45566778888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000913 399 SDGQIVYQGPRELVL 413 (1226)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1226)
++|++++.|+.+++.
T Consensus 221 ~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 221 LDGDLIEYNDTKQMF 235 (252)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988764
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=319.69 Aligned_cols=215 Identities=26% Similarity=0.285 Sum_probs=173.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCcc-
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP- 933 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~- 933 (1226)
.++++|+++.++ .+.+|+|+|+++++|++++|+|+||||||||+++|+|... +.+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEecccc
Confidence 377888888763 2358999999999999999999999999999999999876 468999999876
Q ss_pred ----CCh---hh----hcceeeEeecCCC--CCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCc-ccccc
Q 000913 934 ----KKQ---ET----FARISGYCEQNDI--HSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSL 999 (1226)
Q Consensus 934 ----~~~---~~----~~~~~gyv~Q~~~--~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~ 999 (1226)
... .. .++.++|++|++. +.+.+|+.|++.+..... .. ....+.++.++++++.+++.+ ..+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-GA-RHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-cc-cchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 321 11 2346899999974 345679999987542211 11 111233466889999999963 55554
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeE
Q 000913 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 1078 (1226)
Q Consensus 1000 ~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v 1078 (1226)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++.++ |.|||+++|++. .+.+.+|++
T Consensus 146 -----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~ 219 (253)
T TIGR02323 146 -----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRL 219 (253)
T ss_pred -----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 4579999999999999999999999999999999999999999999998654 899999999986 477789999
Q ss_pred EEEecCcEEEEeCCC
Q 000913 1079 FLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1079 ~ll~~Gg~~~y~G~~ 1093 (1226)
++|++ |++++.|+.
T Consensus 220 ~~l~~-G~i~~~~~~ 233 (253)
T TIGR02323 220 LVMQQ-GRVVESGLT 233 (253)
T ss_pred EEEEC-CEEEEECCH
Confidence 99986 789998874
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=350.19 Aligned_cols=212 Identities=27% Similarity=0.429 Sum_probs=179.2
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000913 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1226)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1226)
..++|+||+|+|+. +++.+|+|+|++++|||.+||+|+||||||||+++|+|... +.+|+|.+||.+
T Consensus 462 ~~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~ 528 (694)
T TIGR03375 462 GEIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ--PTEGSVLLDGVD 528 (694)
T ss_pred ceEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEE
Confidence 46999999999852 12468999999999999999999999999999999999877 568999999988
Q ss_pred CCh---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 000913 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLP 1003 (1226)
Q Consensus 934 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~g~~ 1003 (1226)
+.+ ..+++.++||+|++.+++ .|++||+.++. ++.+. +.++++++..++.+.. |+.+|..
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~-----~~~~~----~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~ 598 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA-----PYADD----EEILRAAELAGVTEFVRRHPDGLDMQIGER 598 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC-----CCCCH----HHHHHHHHHcChHHHHHhCcccccceecCC
Confidence 653 457888999999998887 59999998741 12332 3467778887776543 4455554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 000913 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1226)
Q Consensus 1004 ~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~ 1083 (1226)
..+||||||||++|||||+++|+||+||||||+||+.+++.|++.|+++. +++|+|+++|+++ ..+.+|++++|++
T Consensus 599 -G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~~ 674 (694)
T TIGR03375 599 -GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDN 674 (694)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 36799999999999999999999999999999999999999999999886 4899999999986 4678999999986
Q ss_pred CcEEEEeCCC
Q 000913 1084 GGQEIYVGPL 1093 (1226)
Q Consensus 1084 Gg~~~y~G~~ 1093 (1226)
|+++..|+.
T Consensus 675 -G~i~e~G~~ 683 (694)
T TIGR03375 675 -GRIVADGPK 683 (694)
T ss_pred -CEEEeeCCH
Confidence 799999973
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=391.77 Aligned_cols=257 Identities=19% Similarity=0.237 Sum_probs=196.9
Q ss_pred hHhhHHHHHHhhhccccChHHHHHHHHHHhhh-cCC-CCC-cceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhH
Q 000913 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDR-VGI-DLP-KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNY 154 (1226)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~-~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 154 (1226)
.+.....+||+.++++.++|.- ...+. ... .-| ..+|+|+||++.|..
T Consensus 1196 ~~~~~~s~eRi~e~~~~~~e~~-----~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~------------------------ 1246 (1495)
T PLN03232 1196 AENSLNSVERVGNYIDLPSEAT-----AIIENNRPVSGWPSRGSIKFEDVHLRYRP------------------------ 1246 (1495)
T ss_pred HHHHHHHHHHHHHHhcCCcccc-----ccccCCCCCCCCCCCCcEEEEEEEEEECC------------------------
Confidence 4567788899999887665510 00000 001 112 357999999999842
Q ss_pred hhhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEe
Q 000913 155 LRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYI 231 (1226)
Q Consensus 155 ~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv 231 (1226)
...++|+|+|++|+|||.++|+||+|||||||+++|.|+++|+ +|+|++||.++.+... ++.++||
T Consensus 1247 --------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~IdG~di~~i~~~~lR~~i~iV 1315 (1495)
T PLN03232 1247 --------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE---KGRIMIDDCDVAKFGLTDLRRVLSII 1315 (1495)
T ss_pred --------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CceEEECCEEhhhCCHHHHHhhcEEE
Confidence 1134999999999999999999999999999999999999998 9999999999987654 5789999
Q ss_pred cCCCCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccc
Q 000913 232 SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVC 311 (1226)
Q Consensus 232 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1226)
||++.+|. .||||||.++.. ...+.+.++.++. ++ ... +-.++..
T Consensus 1316 pQdp~LF~-gTIr~NL~~~~~-----~sdeei~~al~~a---~l------------------------~~~--I~~lp~G 1360 (1495)
T PLN03232 1316 PQSPVLFS-GTVRFNIDPFSE-----HNDADLWEALERA---HI------------------------KDV--IDRNPFG 1360 (1495)
T ss_pred CCCCeeeC-ccHHHHcCCCCC-----CCHHHHHHHHHHc---CC------------------------HHH--HHhCcCC
Confidence 99887765 699999986421 1222233322221 11 011 1246778
Q ss_pred ccccccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhh
Q 000913 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (1226)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~ 391 (1226)
.||.||+.+. +||||||||++|||||+++|+||+||||||+||+.|...|.+.|++.. .++|+| ++.|.. ++...
T Consensus 1361 Ldt~v~e~G~-~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~TvI-~IAHRl-~ti~~ 1435 (1495)
T PLN03232 1361 LDAEVSEGGE-NFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF--KSCTML-VIAHRL-NTIID 1435 (1495)
T ss_pred CCceecCCCC-CCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEE-EEeCCH-HHHHh
Confidence 8999998665 599999999999999999999999999999999999999999998753 345554 455554 56667
Q ss_pred cCcEEEEcCCeEEEecChhHHHH
Q 000913 392 FDDIILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 392 ~D~iilL~~G~iv~~G~~~~~~~ 414 (1226)
+|+|++|++|+|+++|+++++++
T Consensus 1436 ~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1436 CDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred CCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999864
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=320.77 Aligned_cols=218 Identities=19% Similarity=0.240 Sum_probs=173.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCC--c-eEEEEEEEcC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITISG 931 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~-~~~G~i~i~g 931 (1226)
.+.++|+++.++ .+.+|+|+|++|++||++||+|+||||||||+++|+|.... . +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 478899988774 24689999999999999999999999999999999997431 1 2579999999
Q ss_pred ccCC-----hhhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 000913 932 YPKK-----QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1226)
Q Consensus 932 ~~~~-----~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 1006 (1226)
.++. ...+++.++|++|++.+++ .||+||+.+....+. .. ...++.+.++++.+++.+..+..... .+.
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLKQ-SGL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhcC-Ccc
Confidence 8652 2234567999999988777 499999988653321 11 12334567778888874311111111 145
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec---
Q 000913 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR--- 1083 (1226)
Q Consensus 1007 ~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~--- 1083 (1226)
.||||||||++|||+|+.+|+||+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.||++++|++
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~ 228 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELT 228 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccc
Confidence 7999999999999999999999999999999999999999999999875 589999999987 58899999999982
Q ss_pred -----CcEEEEeCCC
Q 000913 1084 -----GGQEIYVGPL 1093 (1226)
Q Consensus 1084 -----Gg~~~y~G~~ 1093 (1226)
.|++++.|+.
T Consensus 229 ~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 229 EGGGRYGYLVEFDRT 243 (264)
T ss_pred cccccCceEEEeCCH
Confidence 4799999874
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=321.32 Aligned_cols=205 Identities=21% Similarity=0.313 Sum_probs=162.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-----CCCCceeEEEEcCccCCCC-----CccceEEEecCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-----~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (1226)
.+|+|+||+|++|++++|+|||||||||||++|+|.++ |+ +|+|.++|.++... ..++.++|++|++
T Consensus 27 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~---~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 103 (269)
T PRK14259 27 EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSL---KGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQP 103 (269)
T ss_pred EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCC---ceEEEECCEEcccccCCHHHHhhceEEEccCC
Confidence 49999999999999999999999999999999999987 35 99999999876421 1235699999998
Q ss_pred CCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccc
Q 000913 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1226)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1226)
.+++ .||+||+.+++...+... + ....++.+++.+++....+..
T Consensus 104 ~l~~-~tv~enl~~~~~~~~~~~------~-----------------------------~~~~~~~~l~~~~l~~~l~~~ 147 (269)
T PRK14259 104 NPFP-KSIYENIAFGARINGYTG------D-----------------------------MDELVERSLRKAAVWDECKDK 147 (269)
T ss_pred ccch-hhHHHHHhhhhhhcCCcH------H-----------------------------HHHHHHHHHHHhCCcchhhhh
Confidence 8787 599999998764332100 0 001233456666653211111
Q ss_pred ccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcE
Q 000913 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1226)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1226)
-+..+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .+ .+||.++|+..++.+++|++
T Consensus 148 -~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~~-~tiiivtH~~~~~~~~~d~i 223 (269)
T PRK14259 148 -LNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK--KN-FTIVIVTHNMQQAVRVSDMT 223 (269)
T ss_pred -hCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cC-CEEEEEeCCHHHHHHhcCEE
Confidence 123456799999999999999999999999999999999999999999999874 24 45666788889999999999
Q ss_pred EEEcC-----------CeEEEecChhHHH
Q 000913 396 ILLSD-----------GQIVYQGPRELVL 413 (1226)
Q Consensus 396 ilL~~-----------G~iv~~G~~~~~~ 413 (1226)
++|++ |++++.|+++++.
T Consensus 224 ~~l~~~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 224 AFFNAEEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred EEEeccccccccccccceEEEeCCHHHHH
Confidence 99996 6789999998874
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=302.28 Aligned_cols=168 Identities=27% Similarity=0.417 Sum_probs=149.0
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh
Q 000913 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1226)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1226)
+++|+++.++ ...+|+|+|+++++||+++|+|+||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (173)
T cd03230 2 EVRNLSKRYG-------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKK 66 (173)
T ss_pred EEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEccc
Confidence 5677777663 2358999999999999999999999999999999999876 468999999987543
Q ss_pred --hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 000913 937 --ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1226)
Q Consensus 937 --~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrq 1014 (1226)
..+++.++|++|++.+++.+|+.|++. |||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~q 102 (173)
T cd03230 67 EPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQ 102 (173)
T ss_pred chHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHH
Confidence 234567999999998888899999863 8999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecC
Q 000913 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1226)
Q Consensus 1015 rl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~G 1084 (1226)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||+++|++. ++.+.+|++++|++|
T Consensus 103 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g 171 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNG 171 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999877999999999986 477789999999875
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=305.27 Aligned_cols=170 Identities=41% Similarity=0.673 Sum_probs=148.0
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCCC
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL--DPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMT 242 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~~~~G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1226)
.++|+|+|+++++|++++|+||||||||||+++|+|.+ +|+ +|+|.++|+++.....++.++|++|++.+++.+|
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLT 98 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeCchHhhhheEEEccCcccCCCCCc
Confidence 45999999999999999999999999999999999999 887 9999999998765334567999999988899999
Q ss_pred HHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccccccC
Q 000913 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1226)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 322 (1226)
++||+.++.++ .
T Consensus 99 ~~~~i~~~~~~--------------------------------------------------------------------~ 110 (194)
T cd03213 99 VRETLMFAAKL--------------------------------------------------------------------R 110 (194)
T ss_pred HHHHHHHHHHh--------------------------------------------------------------------c
Confidence 99999764210 0
Q ss_pred CCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecCh-hhHHhhcCcEEEEcCC
Q 000913 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA-PETYDLFDDIILLSDG 401 (1226)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~-~~~~~~~D~iilL~~G 401 (1226)
.||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++.. .+.|+|+ ++|+. .++.+.+|++++|++|
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii-~sh~~~~~~~~~~d~v~~l~~G 188 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIIC-SIHQPSSEIFELFDKLLLLSQG 188 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEE-EecCchHHHHHhcCEEEEEeCC
Confidence 4999999999999999999999999999999999999999999998754 3556555 45554 4788999999999999
Q ss_pred eEEEec
Q 000913 402 QIVYQG 407 (1226)
Q Consensus 402 ~iv~~G 407 (1226)
++++.|
T Consensus 189 ~i~~~~ 194 (194)
T cd03213 189 RVIYFG 194 (194)
T ss_pred EEEecC
Confidence 998765
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=361.35 Aligned_cols=259 Identities=24% Similarity=0.398 Sum_probs=191.8
Q ss_pred hHhhHHHHHHhhhccccChHHHHHHHHHHhhhcCCCCC-cceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHhh
Q 000913 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLP-KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLR 156 (1226)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 156 (1226)
.++++..++|+.+.++.+++ .....+....+.+ ...++|+||++.++..
T Consensus 301 ~~~~~~~~~ri~~~l~~~~~-----~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~------------------------- 350 (576)
T TIGR02204 301 LQRAAGAAERLIELLQAEPD-----IKAPAHPKTLPVPLRGEIEFEQVNFAYPAR------------------------- 350 (576)
T ss_pred HHHHHHHHHHHHHHhCCCCc-----CCCCCCCccCCcCCCceEEEEEEEEECCCC-------------------------
Confidence 45677788888887765433 0000000011112 2359999999998420
Q ss_pred hcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecC
Q 000913 157 IIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQ 233 (1226)
Q Consensus 157 ~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q 233 (1226)
..+.+|+|+|++++|||.++|+||||||||||+++|+|.++|. +|+|.+||.++++..+ ++.++||+|
T Consensus 351 ------~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~~~Q 421 (576)
T TIGR02204 351 ------PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPAELRARMALVPQ 421 (576)
T ss_pred ------CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHHhceEEcc
Confidence 1135999999999999999999999999999999999999998 9999999999877654 367999999
Q ss_pred CCCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccc
Q 000913 234 HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCAD 313 (1226)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1226)
++. +.+.|++|||.++.. ....+...++.+. .+ ..+.++ .+++..|
T Consensus 422 ~~~-lf~~Ti~~Ni~~~~~----~~~~~~~~~~l~~---~~------------------------l~~~i~--~l~~gl~ 467 (576)
T TIGR02204 422 DPV-LFAASVMENIRYGRP----DATDEEVEAAARA---AH------------------------AHEFIS--ALPEGYD 467 (576)
T ss_pred CCc-cccccHHHHHhcCCC----CCCHHHHHHHHHH---cC------------------------cHHHHH--hCCCCCC
Confidence 765 556799999987531 1111222221111 00 011222 3566778
Q ss_pred ccccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcC
Q 000913 314 TMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393 (1226)
Q Consensus 314 t~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 393 (1226)
|.+|+.+ ..||||||||++|||+++++|++++||||||+||+.++..+++.|+++. .++|+|+ ++|.. +....+|
T Consensus 468 t~i~~~g-~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~--~~~t~Ii-itH~~-~~~~~~d 542 (576)
T TIGR02204 468 TYLGERG-VTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM--KGRTTLI-IAHRL-ATVLKAD 542 (576)
T ss_pred ceeCCCC-CcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh--CCCEEEE-Eecch-HHHHhCC
Confidence 9999864 4699999999999999999999999999999999999999999999863 3455555 45543 5568899
Q ss_pred cEEEEcCCeEEEecChhHHHH
Q 000913 394 DIILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 394 ~iilL~~G~iv~~G~~~~~~~ 414 (1226)
+|++|++|+++..|+++++.+
T Consensus 543 ~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 543 RIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred EEEEEECCEEEeeecHHHHHH
Confidence 999999999999999988753
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=318.35 Aligned_cols=197 Identities=25% Similarity=0.373 Sum_probs=168.3
Q ss_pred EeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh---hhhcceeeEeecCCCCCCCCCHH
Q 000913 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIY 959 (1226)
Q Consensus 883 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~ 959 (1226)
+|+||||++++|++++|+|+||||||||+++|+|... . +|+|.++|.+... ...++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~--~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP--G-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--C-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999864 3 7999999987532 23445689999998888889999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhh-------CCCEEEEe
Q 000913 960 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 1032 (1226)
Q Consensus 960 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqrl~ia~~L~~-------~p~il~LD 1032 (1226)
||+.+.... ....++..+.++++++.++|.+..++.+ ..||||||||++||++|+. +|++|+||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999875321 1122333566889999999987766653 5799999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 000913 1033 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1033 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~~~y~G~~ 1093 (1226)
|||+|||+.++..+++.|+++.++|+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 217 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRR 217 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999877999999999986 47889999999986 689998875
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=317.93 Aligned_cols=207 Identities=18% Similarity=0.272 Sum_probs=162.1
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-----CCCCceeEEEEcCccCCCCC-----ccceEEEecCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PTLKVSGTVTYNGHDMDEFV-----PQRTAAYISQHD 235 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-----~~~~~~G~I~~nG~~~~~~~-----~~~~~~yv~Q~d 235 (1226)
.+|+|+|+.+++|++++|+|||||||||||++|+|.++ |+ +|+|.++|.++.... .++.++|++|++
T Consensus 35 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 111 (268)
T PRK14248 35 RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARS---EGEILYEGLNILDSNINVVNLRREIGMVFQKP 111 (268)
T ss_pred eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCC---ceEEEECCEEcccccccHHHHhccEEEEecCC
Confidence 49999999999999999999999999999999999864 45 899999999875321 235799999998
Q ss_pred CCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccc
Q 000913 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTM 315 (1226)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1226)
.+++. ||+||+.++....+.... . ..+..+...++.+++.......
T Consensus 112 ~~~~~-tv~enl~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~~~~~ 157 (268)
T PRK14248 112 NPFPK-SIYNNITHALKYAGERRK-S--------------------------------VLDEIVEESLTKAALWDEVKDR 157 (268)
T ss_pred ccCcc-cHHHHHHHHHHhcCCCcH-H--------------------------------HHHHHHHHHHHHcCCCcchHHH
Confidence 77774 999999886432211000 0 0011234456667764211111
Q ss_pred ccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcE
Q 000913 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1226)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1226)
-+..+..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++.. + ++|+.++|+..++.+++|+|
T Consensus 158 -~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiii~tH~~~~~~~~~d~v 233 (268)
T PRK14248 158 -LHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--E-YSIIIVTHNMQQALRVSDRT 233 (268)
T ss_pred -HhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--C-CEEEEEEeCHHHHHHhCCEE
Confidence 1234557999999999999999999999999999999999999999999998743 3 45666778888899999999
Q ss_pred EEEcCCeEEEecChhHHH
Q 000913 396 ILLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1226)
++|++|++++.|+.+++.
T Consensus 234 ~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 234 AFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988764
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=319.68 Aligned_cols=212 Identities=28% Similarity=0.372 Sum_probs=168.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC-----CCceeEEEEcCccCCCCCc---cceEEEecCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT-----LKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNH 237 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~-----~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~ 237 (1226)
.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ ...+|+|.++|.++..... ++.++|++|++..
T Consensus 15 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~ 94 (272)
T PRK13547 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQP 94 (272)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCC
Confidence 4999999999999999999999999999999999999874 1137999999998754332 3468999998776
Q ss_pred CCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccc
Q 000913 238 IGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG 317 (1226)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1226)
++.+||+||+.++......... . . ..+....++.+++.+||+...++.
T Consensus 95 ~~~~tv~e~l~~~~~~~~~~~~--~-------------~---------------~~~~~~~~~~~l~~~~l~~~~~~~-- 142 (272)
T PRK13547 95 AFAFSAREIVLLGRYPHARRAG--A-------------L---------------THRDGEIAWQALALAGATALVGRD-- 142 (272)
T ss_pred CCCCcHHHHHhhcccccccccc--c-------------C---------------CHHHHHHHHHHHHHcCcHhhhcCC--
Confidence 6779999999875311000000 0 0 000112356788899998655544
Q ss_pred ccccCCCChhHhhHHHHHHHHh---------cCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhH
Q 000913 318 DEMIRGISGGQKKRVTTGEMMV---------GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (1226)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~---------~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~ 388 (1226)
+..|||||||||+||++|+ .+|++|+|||||+|||+.+...+.+.|+++.+..+ ++|+.++|+..++
T Consensus 143 ---~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tviiisH~~~~~ 218 (272)
T PRK13547 143 ---VTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN-LGVLAIVHDPNLA 218 (272)
T ss_pred ---cccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcC-CEEEEEECCHHHH
Confidence 4569999999999999999 59999999999999999999999999998765324 4455577888889
Q ss_pred HhhcCcEEEEcCCeEEEecChhHHH
Q 000913 389 YDLFDDIILLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 389 ~~~~D~iilL~~G~iv~~G~~~~~~ 413 (1226)
.+++|++++|++|++++.|+.+++.
T Consensus 219 ~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 219 ARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred HHhCCEEEEEECCeEEEecCHHHHc
Confidence 9999999999999999999988763
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=316.04 Aligned_cols=210 Identities=22% Similarity=0.346 Sum_probs=163.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCceeEEEEcCccCCCC-----CccceEEEecCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDP--TLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1226)
++|+|+|++|++||+++|+|||||||||||++|+|.+++ ....+|+|.++|+++... ..++.++|++|++.++
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF 96 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccC
Confidence 489999999999999999999999999999999998763 111389999999987531 1245799999998777
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 000913 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1226)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1226)
+ +||+||+.++....+..... +....++.+++.+++.+...... +
T Consensus 97 ~-~t~~~ni~~~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~l~~~l~~~~-~ 141 (250)
T PRK14240 97 P-MSIYDNVAYGPRTHGIKDKK---------------------------------KLDEIVEKSLKGAALWDEVKDRL-K 141 (250)
T ss_pred c-ccHHHHHHHHHHhcCCCCHH---------------------------------HHHHHHHHHHHHcCCchhhHHHH-h
Confidence 7 89999999875433210000 01122445566666642111111 2
Q ss_pred cccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEE
Q 000913 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1226)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1226)
..+..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++. .+. +|+.++|+..++.+++|+|++|
T Consensus 142 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~-tiii~sH~~~~~~~~~d~v~~l 218 (250)
T PRK14240 142 KSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK--KDY-TIVIVTHNMQQASRISDKTAFF 218 (250)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCC-eEEEEEeCHHHHHhhCCEEEEE
Confidence 3455799999999999999999999999999999999999999999999874 244 4555777888899999999999
Q ss_pred cCCeEEEecChhHHH
Q 000913 399 SDGQIVYQGPRELVL 413 (1226)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1226)
++|++++.|+.+++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 219 LNGEIVEFGDTVDLF 233 (250)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988763
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-34 Score=317.35 Aligned_cols=216 Identities=22% Similarity=0.297 Sum_probs=175.1
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCC--ce--EEEEEEEc
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GY--ITGNITIS 930 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~~--~~G~i~i~ 930 (1226)
.+.++++++.++ ++.+|+|+||++.+||+++|+|+||||||||+++|+|...+ |. +.|++.++
T Consensus 10 ~i~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~ 76 (257)
T PRK14246 10 VFNISRLYLYIN-------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYF 76 (257)
T ss_pred heeeeeEEEecC-------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEEC
Confidence 378889888763 34689999999999999999999999999999999997652 21 23666666
Q ss_pred CccCC---hhhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCCC
Q 000913 931 GYPKK---QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQSLVGLP 1003 (1226)
Q Consensus 931 g~~~~---~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~~g~~ 1003 (1226)
|.+.. ...+++.++|++|++.+++.+|++||+.+...... ....++.++.+.++++.+++.+ ..+..
T Consensus 77 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 150 (257)
T PRK14246 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP---- 150 (257)
T ss_pred CcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC----
Confidence 66542 22356679999999999889999999998643321 1123344566889999999864 23332
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 000913 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1226)
Q Consensus 1004 ~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~ 1083 (1226)
+..||+|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. .+.+.||++++|++
T Consensus 151 -~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~ 227 (257)
T PRK14246 151 -ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN 227 (257)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999864 699999999986 47789999999985
Q ss_pred CcEEEEeCCC
Q 000913 1084 GGQEIYVGPL 1093 (1226)
Q Consensus 1084 Gg~~~y~G~~ 1093 (1226)
|+++..|+.
T Consensus 228 -g~i~~~g~~ 236 (257)
T PRK14246 228 -GELVEWGSS 236 (257)
T ss_pred -CEEEEECCH
Confidence 799988874
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-34 Score=317.00 Aligned_cols=219 Identities=21% Similarity=0.263 Sum_probs=176.0
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCc---eEEEEEEEcC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGNITISG 931 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 931 (1226)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+|||||||||++|+|..... +.+|+|.++|
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 367888887763 246999999999999999999999999999999999974311 2589999999
Q ss_pred ccCCh-----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 000913 932 YPKKQ-----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVS 1006 (1226)
Q Consensus 932 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~ 1006 (1226)
.++.. ...++.++|++|++.+++. |+.||+.+...... ..+.+..++.+.++++.+++.+........ .+.
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 145 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKLDK-SAL 145 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHHhC-Ccc
Confidence 87532 2345679999999888874 99999987643221 112233456788899999885422122222 246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 000913 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1226)
Q Consensus 1007 ~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~ 1086 (1226)
.||+|||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++. +|+|||+++|++. ++.+.+|++++|++ |+
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~~~~~~i~~l~~-G~ 222 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQ-QATRVSKYTSFFLN-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEECCHH-HHHhhcCEEEEEEC-Ce
Confidence 799999999999999999999999999999999999999999999986 4899999999987 58889999999986 79
Q ss_pred EEEeCCC
Q 000913 1087 EIYVGPL 1093 (1226)
Q Consensus 1087 ~~y~G~~ 1093 (1226)
+++.|+.
T Consensus 223 i~~~g~~ 229 (250)
T PRK14266 223 IIESGLT 229 (250)
T ss_pred EEEeCCH
Confidence 9999874
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=310.34 Aligned_cols=197 Identities=28% Similarity=0.376 Sum_probs=164.8
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|++..++ ++.+|+|+||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCc
Confidence 56788877663 2469999999999999999999999999999999999866 46899999998753
Q ss_pred hhhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 000913 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKR 1015 (1226)
Q Consensus 936 ~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrqr 1015 (1226)
...+++.++|++|++.+++.+||.||+.+....+. .. ++.+.++++.++|.+..+..+ ..||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHH
Confidence 22256678999999888888999999987543321 11 234788999999987666553 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 000913 1016 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1226)
Q Consensus 1016 l~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~ 1082 (1226)
++||++|+.+|++|+|||||+|||+.+...+++.|++++++|+|||+++|++. ++.+ |+++.+.
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~--~~~~~~~ 199 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLPG--ARELDLG 199 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhcc--CcEEeec
Confidence 99999999999999999999999999999999999998878999999999986 3443 8887774
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=316.68 Aligned_cols=205 Identities=27% Similarity=0.428 Sum_probs=157.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1226)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++ ..|
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~-~~t 91 (237)
T cd03252 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWLRRQVGVVLQENVLF-NRS 91 (237)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHHhhcEEEEcCCchhc-cch
Confidence 4899999999999999999999999999999999999998 9999999987654322 35799999987665 579
Q ss_pred HHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHc--CCcccccccccccc
Q 000913 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL--GLDVCADTMVGDEM 320 (1226)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~~ 320 (1226)
|+||+.+... . ...+...+.... ...+.+++.+ +++...+ ..
T Consensus 92 v~~nl~~~~~--~--~~~~~~~~~~~~---------------------------~~~~~~l~~l~~~~~~~~~-----~~ 135 (237)
T cd03252 92 IRDNIALADP--G--MSMERVIEAAKL---------------------------AGAHDFISELPEGYDTIVG-----EQ 135 (237)
T ss_pred HHHHhhccCC--C--CCHHHHHHHHHH---------------------------cCcHHHHHhCcccccchhh-----cC
Confidence 9999987532 1 111111110000 0112234444 4433223 34
Q ss_pred cCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEcC
Q 000913 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1226)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~~ 400 (1226)
+..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++. .+.| |+.++|+..++ ..+|++++|++
T Consensus 136 ~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~t-iii~sH~~~~~-~~~d~v~~l~~ 211 (237)
T cd03252 136 GAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC--AGRT-VIIIAHRLSTV-KNADRIIVMEK 211 (237)
T ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCE-EEEEeCCHHHH-HhCCEEEEEEC
Confidence 56799999999999999999999999999999999999999999999874 3445 55566676776 46999999999
Q ss_pred CeEEEecChhHHHH
Q 000913 401 GQIVYQGPRELVLE 414 (1226)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (1226)
|++++.|+.+++.+
T Consensus 212 G~i~~~~~~~~~~~ 225 (237)
T cd03252 212 GRIVEQGSHDELLA 225 (237)
T ss_pred CEEEEEcCHHHHHh
Confidence 99999999887643
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=315.27 Aligned_cols=209 Identities=26% Similarity=0.408 Sum_probs=168.4
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++. ..+.+|+|+|+++++|++++|+||||||||||+++|+|... +..|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 69 (220)
T cd03245 3 IEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhH
Confidence 667888776631 12458999999999999999999999999999999999875 45799999998653
Q ss_pred h---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccC------CCCCC
Q 000913 936 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG------LPGVS 1006 (1226)
Q Consensus 936 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g------~~~~~ 1006 (1226)
. ...++.++|++|++.+++ .||.|++.+... ... ++.+.++++.+++.+..+..+. ...+.
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 139 (220)
T cd03245 70 QLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGR 139 (220)
T ss_pred HCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCc
Confidence 2 234567999999988776 699999976421 111 2235678888888776665431 01235
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 000913 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1226)
Q Consensus 1007 ~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~ 1086 (1226)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ +|||+++|++.. .+.+|++++|++ |+
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~--~~~~d~v~~l~~-g~ 215 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSL--LDLVDRIIVMDS-GR 215 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHH--HHhCCEEEEEeC-Ce
Confidence 79999999999999999999999999999999999999999999998764 899999999863 479999999986 67
Q ss_pred EEEeC
Q 000913 1087 EIYVG 1091 (1226)
Q Consensus 1087 ~~y~G 1091 (1226)
+++.|
T Consensus 216 i~~~~ 220 (220)
T cd03245 216 IVADG 220 (220)
T ss_pred EeecC
Confidence 77654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=315.22 Aligned_cols=207 Identities=23% Similarity=0.334 Sum_probs=163.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CceeEEEEcCccCCCC-----CccceEEEecCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1226)
++|+|+|+.|++|++++|+|||||||||||++|+|.++|+. ..+|+|.++|.++... ..++.++|++|++.++
T Consensus 18 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (252)
T PRK14272 18 QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPF 97 (252)
T ss_pred EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccC
Confidence 49999999999999999999999999999999999987631 1379999999887531 1245799999999899
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc----ccccc
Q 000913 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD----VCADT 314 (1226)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (1226)
+.+||+||+.++....+... .+. ....++.+++.+++. +..++
T Consensus 98 ~~~t~~enl~~~~~~~~~~~-~~~--------------------------------~~~~~~~~l~~~~l~~~l~~~~~~ 144 (252)
T PRK14272 98 PTMSVFDNVVAGLKLAGIRD-RDH--------------------------------LMEVAERSLRGAALWDEVKDRLKT 144 (252)
T ss_pred cCCCHHHHHHHHHHhcCCCC-HHH--------------------------------HHHHHHHHHHHcCcchhhhhhhcC
Confidence 99999999987653221100 000 011223344455443 22333
Q ss_pred cccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCc
Q 000913 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1226)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1226)
.++.||||||||++||++|+.+|++|+|||||+|||..+...+.+.|+++. .+ ++|+.++|+..++.+.+|+
T Consensus 145 -----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~-~tiii~sH~~~~~~~~~d~ 216 (252)
T PRK14272 145 -----PATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK--KV-TTIIIVTHNMHQAARVSDT 216 (252)
T ss_pred -----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHHhCCE
Confidence 345799999999999999999999999999999999999999999999874 24 5556677888899999999
Q ss_pred EEEEcCCeEEEecChhHHH
Q 000913 395 IILLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 395 iilL~~G~iv~~G~~~~~~ 413 (1226)
|++|++|++++.|+++++.
T Consensus 217 i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 217 TSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=318.61 Aligned_cols=210 Identities=25% Similarity=0.330 Sum_probs=167.0
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCCC----ccceEEEecCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEFV----PQRTAAYISQHDNHIG 239 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~I~~nG~~~~~~~----~~~~~~yv~Q~d~~~~ 239 (1226)
++|+|+|+.|++|++++|+|||||||||||++|+|.++|. ...+|+|.++|.++.+.. .++.++|++|++.+++
T Consensus 35 ~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~ 114 (276)
T PRK14271 35 TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP 114 (276)
T ss_pred EEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC
Confidence 4999999999999999999999999999999999998751 012899999998875431 2467999999887777
Q ss_pred CCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 000913 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1226)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1226)
+||+||+.++...... ... .+....+..+++.+||....++.. +.
T Consensus 115 -~tv~eni~~~~~~~~~-~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~l-~~ 159 (276)
T PRK14271 115 -MSIMDNVLAGVRAHKL-VPR--------------------------------KEFRGVAQARLTEVGLWDAVKDRL-SD 159 (276)
T ss_pred -ccHHHHHHHHHHhccC-CCH--------------------------------HHHHHHHHHHHHHcCCCchhhhHh-hC
Confidence 8999999886432110 000 001112355677888865332222 23
Q ss_pred ccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEc
Q 000913 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1226)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1226)
.+..|||||||||+|||+|+.+|++++|||||+|||+.+...+.+.|+++.. + ++||.++|+..++.+++|++++|+
T Consensus 160 ~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~dri~~l~ 236 (276)
T PRK14271 160 SPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--R-LTVIIVTHNLAQAARISDRAALFF 236 (276)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCEEEEEE
Confidence 4567999999999999999999999999999999999999999999998753 3 455667888899999999999999
Q ss_pred CCeEEEecChhHHH
Q 000913 400 DGQIVYQGPRELVL 413 (1226)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1226)
+|++++.|+++++.
T Consensus 237 ~G~i~~~g~~~~~~ 250 (276)
T PRK14271 237 DGRLVEEGPTEQLF 250 (276)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999998774
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=315.49 Aligned_cols=219 Identities=26% Similarity=0.311 Sum_probs=171.2
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++.++ .+.+|+|+|+.|++|++++|+|+||||||||+++|+|.....+.+|+|.++|.++.
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 56788887764 24699999999999999999999999999999999998421146899999998753
Q ss_pred h---hh-hcceeeEeecCCCCCCCCCHHHHHHHHH-HhhcC-C--CCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 000913 936 Q---ET-FARISGYCEQNDIHSPFVTIYESLLFSA-WLRLS-P--EVDSETRKMFIDEVMELVELN-PLRQSLVGLPGVS 1006 (1226)
Q Consensus 936 ~---~~-~~~~~gyv~Q~~~~~~~lTv~E~l~f~~-~lr~~-~--~~~~~~~~~~v~~~l~~l~l~-~~~~~~~g~~~~~ 1006 (1226)
. .. .++.++|++|++.+++.+|+.+++.+.. .++.. . .....+..++++++++.+++. +..+..+ ..
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NV 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CC
Confidence 2 11 2346999999998888888777654321 11110 0 012223356678899999984 3444432 13
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHh-cCeEEEEecCc
Q 000913 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGG 1085 (1226)
Q Consensus 1007 ~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~-~D~v~ll~~Gg 1085 (1226)
.|||||||||+||++|+.+|+||+|||||+|||+.++..+.+.|+++.++|+|||+++|++.. +... +|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~-~~~~~~d~i~~l~~-g 222 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLYQ-G 222 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHhhhCCEEEEEEC-C
Confidence 699999999999999999999999999999999999999999999998778999999999863 5555 899999985 7
Q ss_pred EEEEeCCC
Q 000913 1086 QEIYVGPL 1093 (1226)
Q Consensus 1086 ~~~y~G~~ 1093 (1226)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (248)
T PRK09580 223 RIVKSGDF 230 (248)
T ss_pred eEEEeCCH
Confidence 89999875
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=319.68 Aligned_cols=209 Identities=24% Similarity=0.324 Sum_probs=164.0
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh
Q 000913 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1226)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1226)
+++|+++.++. .++.+|+|+||++++|++++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 68 (234)
T cd03251 2 EFKNVTFRYPG-----------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRD 68 (234)
T ss_pred EEEEEEEEeCC-----------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhh
Confidence 56777776631 11358999999999999999999999999999999999876 468999999976532
Q ss_pred ---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHH-----HHHHHHHHHc--CCCcccccccCCCCCC
Q 000913 937 ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRK-----MFIDEVMELV--ELNPLRQSLVGLPGVS 1006 (1226)
Q Consensus 937 ---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~-----~~v~~~l~~l--~l~~~~~~~~g~~~~~ 1006 (1226)
...++.++|++|++.+++ .||+||+.+.... ....... ..+++.++.+ ++....+.. +.
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~ 137 (234)
T cd03251 69 YTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GV 137 (234)
T ss_pred CCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CC
Confidence 334567999999988776 6999999875321 1111111 1233444444 444444433 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 000913 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1226)
Q Consensus 1007 ~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~ 1086 (1226)
.||+|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++. +|.|||+++|++. ++. .+|++++|++ |+
T Consensus 138 ~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~~-~~d~v~~l~~-G~ 213 (234)
T cd03251 138 KLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLS-TIE-NADRIVVLED-GK 213 (234)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HHh-hCCEEEEecC-Ce
Confidence 799999999999999999999999999999999999999999999986 4899999999986 354 5999999987 68
Q ss_pred EEEeCCC
Q 000913 1087 EIYVGPL 1093 (1226)
Q Consensus 1087 ~~y~G~~ 1093 (1226)
+++.|+.
T Consensus 214 i~~~~~~ 220 (234)
T cd03251 214 IVERGTH 220 (234)
T ss_pred EeeeCCH
Confidence 8888764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=321.75 Aligned_cols=210 Identities=19% Similarity=0.283 Sum_probs=173.9
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++. +...+|+|||++|++||+++|+|+||||||||+++|+|... .+|+|.++|.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 4788999988852 12358999999999999999999999999999999999874 369999999876
Q ss_pred Ch---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCC------CCC
Q 000913 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL------PGV 1005 (1226)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~------~~~ 1005 (1226)
.. ...++.++||+|++.+++ .||+||+.... ... ++.++++++.++|.+..+..++. ++.
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 43 345677999999998887 49999996321 111 23467888999998766655431 123
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 000913 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1226)
Q Consensus 1006 ~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg 1085 (1226)
..||||||||++|||||+.+|+||+|||||+|||+.+...+++.|+++. .++|||+++|+++ .+ ..+|++++|++ |
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i-~~~dri~vl~~-G 212 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM-LECQRFLVIEE-N 212 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH-HhCCEEEEecC-C
Confidence 5699999999999999999999999999999999999999999999875 5899999999985 34 45999999986 7
Q ss_pred EEEEeCCC
Q 000913 1086 QEIYVGPL 1093 (1226)
Q Consensus 1086 ~~~y~G~~ 1093 (1226)
++++.|++
T Consensus 213 ~i~~~g~~ 220 (275)
T cd03289 213 KVRQYDSI 220 (275)
T ss_pred eEeecCCH
Confidence 99999985
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=317.27 Aligned_cols=210 Identities=21% Similarity=0.316 Sum_probs=164.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCC-----CccceEEEecCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1226)
++|+|+|+.|++|++++|+||||||||||+++|+|.+++. ...+|+|.++|.++... ..++.++|++|++.++
T Consensus 39 ~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 118 (272)
T PRK14236 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPF 118 (272)
T ss_pred eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccC
Confidence 4899999999999999999999999999999999998740 01289999999987531 1246799999998878
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 000913 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1226)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1226)
+. ||+||+.+.....+.... + .....++.+++.+++.....+.. +
T Consensus 119 ~~-tv~enl~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 163 (272)
T PRK14236 119 PK-SIYENVVYGLRLQGINNR-R--------------------------------VLDEAVERSLRGAALWDEVKDRL-H 163 (272)
T ss_pred cc-cHHHHHHHHHHhcCCCcH-H--------------------------------HHHHHHHHHHHHcCCChhHHHHh-h
Confidence 75 999999887543321000 0 00112455667777753211111 2
Q ss_pred cccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEE
Q 000913 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1226)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1226)
..+..|||||||||+||++|+.+|+++||||||+|||+.+...+.+.|++++. +. +|+.++|+..++.+.+|+|++|
T Consensus 164 ~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~-tiiivtH~~~~~~~~~d~i~~l 240 (272)
T PRK14236 164 ENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KY-TIVIVTHNMQQAARVSDYTAFM 240 (272)
T ss_pred CCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CC-eEEEEeCCHHHHHhhCCEEEEE
Confidence 34567999999999999999999999999999999999999999999998753 44 4555778888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000913 399 SDGQIVYQGPRELVL 413 (1226)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1226)
++|++++.|+.+++.
T Consensus 241 ~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 241 YMGKLVEYGDTDTLF 255 (272)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999988763
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=314.70 Aligned_cols=210 Identities=20% Similarity=0.330 Sum_probs=163.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCceeEEEEcCccCCCC-----CccceEEEecCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1226)
++|+|+|+.|++|++++|+|||||||||||++|+|.++ |....+|+|.++|.++... ..++.++|++|++.++
T Consensus 18 ~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (251)
T PRK14251 18 EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPF 97 (251)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccC
Confidence 49999999999999999999999999999999999986 2111289999999886431 1245799999988777
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 000913 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1226)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1226)
+ .||+||+.++....+.... + .....++.+++.+++........ +
T Consensus 98 ~-~tv~enl~~~~~~~~~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 142 (251)
T PRK14251 98 P-FSVYDNVAYGLKIAGVKDK-----E----------------------------LIDQRVEESLKQAAIWKETKDNL-D 142 (251)
T ss_pred C-CcHHHHHHHHHHHcCCCCH-----H----------------------------HHHHHHHHHHHHcCCCcchHHHh-c
Confidence 5 7999999886533211100 0 00122455677778742110011 2
Q ss_pred cccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEE
Q 000913 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1226)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1226)
.....||||||||++||++|+.+|+++||||||+|||+.+...+.+.|+++. .+ ++||.++|+..++.+++|+|++|
T Consensus 143 ~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~-~tiiiisH~~~~~~~~~d~i~~l 219 (251)
T PRK14251 143 RNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK--HQ-YTFIMVTHNLQQAGRISDQTAFL 219 (251)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH--cC-CeEEEEECCHHHHHhhcCEEEEE
Confidence 3456799999999999999999999999999999999999999999999874 23 45666788888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000913 399 SDGQIVYQGPRELVL 413 (1226)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1226)
++|+++..|+.+++.
T Consensus 220 ~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 220 MNGDLIEAGPTEEMF 234 (251)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988763
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=302.64 Aligned_cols=170 Identities=29% Similarity=0.423 Sum_probs=149.8
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh
Q 000913 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1226)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1226)
+++|+++.++ ++.+|+|+|+++++|++++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (178)
T cd03229 2 ELKNVSKRYG-------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTD 66 (178)
T ss_pred EEEEEEEEEC-------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 5677776653 2469999999999999999999999999999999999876 468999999987532
Q ss_pred -----hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 000913 937 -----ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE 1011 (1226)
Q Consensus 937 -----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgG 1011 (1226)
..+++.++|++|++.+++..|++|++.+. ||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G 104 (178)
T cd03229 67 LEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGG 104 (178)
T ss_pred cchhHHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHH
Confidence 23567799999999888889999987642 8999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcHHHHHhcCeEEEEecC
Q 000913 1012 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1226)
Q Consensus 1012 qrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~t~H~p~~~i~~~~D~v~ll~~G 1084 (1226)
||||++||++|+.+|++++|||||+|||+.++..+++.|++++++ |+|||+++|++. ++.+.+|++++|++|
T Consensus 105 ~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g 177 (178)
T cd03229 105 QQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDG 177 (178)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCC
Confidence 999999999999999999999999999999999999999999877 899999999986 467789999999864
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=316.31 Aligned_cols=217 Identities=21% Similarity=0.240 Sum_probs=175.8
Q ss_pred CceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCC--c-eEEEEEEE
Q 000913 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGNITI 929 (1226)
Q Consensus 853 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~-~~~G~i~i 929 (1226)
+..++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|...+ + +.+|+|.+
T Consensus 14 ~~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~ 80 (265)
T PRK14252 14 QQKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL 80 (265)
T ss_pred CceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEE
Confidence 34588999998874 24699999999999999999999999999999999998652 1 26899999
Q ss_pred cCccCC-------hhhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCc----cccc
Q 000913 930 SGYPKK-------QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP----LRQS 998 (1226)
Q Consensus 930 ~g~~~~-------~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~ 998 (1226)
+|.+.. ...+++.++|++|++.+++. ||+||+.+....... ......++.+.++++.+++.+ ..+.
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~ 157 (265)
T PRK14252 81 HPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGV--KRRSILEERVENALRNAALWDEVKDRLGD 157 (265)
T ss_pred cCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCC--ChHHHHHHHHHHHHHHcCCchhhhHHHhC
Confidence 987542 12345679999999988875 999999876432211 111223456778888888742 2233
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeE
Q 000913 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1078 (1226)
Q Consensus 999 ~~g~~~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v 1078 (1226)
. +..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++ ++|||+++|+++ ++.+.+|++
T Consensus 158 ~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i 230 (265)
T PRK14252 158 L-----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYT 230 (265)
T ss_pred C-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEE
Confidence 3 357999999999999999999999999999999999999999999999865 699999999986 477899999
Q ss_pred EEEecCcEEEEeCCC
Q 000913 1079 FLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1079 ~ll~~Gg~~~y~G~~ 1093 (1226)
++|++ |+++..|+.
T Consensus 231 ~~l~~-G~i~~~g~~ 244 (265)
T PRK14252 231 AYMYM-GELIEFGAT 244 (265)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99986 789988874
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=314.94 Aligned_cols=209 Identities=22% Similarity=0.326 Sum_probs=162.9
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CceeEEEEcCccCCC-C---CccceEEEecCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDE-F---VPQRTAAYISQHDNHIG 239 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~I~~nG~~~~~-~---~~~~~~~yv~Q~d~~~~ 239 (1226)
.+|+|+|+.|++|++++|+||||||||||+++|+|.++|+. ..+|+|.++|.++.. . ..++.++|++|++.+++
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 96 (249)
T PRK14253 17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP 96 (249)
T ss_pred eeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc
Confidence 49999999999999999999999999999999999987520 128999999987642 1 12457999999988787
Q ss_pred CCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCccccccccccc
Q 000913 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDE 319 (1226)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1226)
.||+||+.++....+.... + .....++..++.+|+.+...... +.
T Consensus 97 -~tv~~~l~~~~~~~~~~~~-~--------------------------------~~~~~~~~~~~~~~l~~~~~~~~-~~ 141 (249)
T PRK14253 97 -MSIYENVAYGLRAQGIKDK-K--------------------------------VLDEVVERSLRGAALWDEVKDRL-KS 141 (249)
T ss_pred -ccHHHHHHhHHHhcCCCch-H--------------------------------HHHHHHHHHHHHcCCchhhhHHh-hc
Confidence 8999999886533211000 0 00112344566666643211111 23
Q ss_pred ccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEEc
Q 000913 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1226)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL~ 399 (1226)
....|||||||||+||++|+.+|+++||||||+|||+.+...+.+.|+++.+ + ++|+.++|+..++.+.+|++++|+
T Consensus 142 ~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sh~~~~~~~~~d~i~~l~ 218 (249)
T PRK14253 142 HAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--N-YTIVIVTHSMQQARRISDRTAFFL 218 (249)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEecCHHHHHHhCCEEEEEE
Confidence 4557999999999999999999999999999999999999999999998753 3 455557778889999999999999
Q ss_pred CCeEEEecChhHH
Q 000913 400 DGQIVYQGPRELV 412 (1226)
Q Consensus 400 ~G~iv~~G~~~~~ 412 (1226)
+|++++.|+.+++
T Consensus 219 ~G~i~~~g~~~~~ 231 (249)
T PRK14253 219 MGELVEHDDTQVI 231 (249)
T ss_pred CCEEEEeCCHHHH
Confidence 9999999998765
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=319.74 Aligned_cols=210 Identities=28% Similarity=0.404 Sum_probs=162.3
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh
Q 000913 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1226)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1226)
+++|+++.++.. +++.+|+|+||++++|++++|+|+||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~~~----------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 69 (238)
T cd03249 2 EFKNVSFRYPSR----------PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRD 69 (238)
T ss_pred eEEEEEEecCCC----------CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhh
Confidence 467777765311 12458999999999999999999999999999999999876 468999999976532
Q ss_pred ---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccc-------cCCCCCC
Q 000913 937 ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL-------VGLPGVS 1006 (1226)
Q Consensus 937 ---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~-------~g~~~~~ 1006 (1226)
...++.++|++|++.+++ .||+|++.+....+ ..+ .+++.++..++.+..+.+ .. ..+.
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~ 138 (238)
T cd03249 70 LNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDE----EVEEAAKKANIHDFIMSLPDGYDTLVG-ERGS 138 (238)
T ss_pred cCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHH----HHHHHHHHcChHHHHHhhccccceeec-cCCc
Confidence 234566999999988776 69999998742111 111 122333333333221111 11 1246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 000913 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1226)
Q Consensus 1007 ~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg~ 1086 (1226)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||+++|++.. + +.||++++|++ |+
T Consensus 139 ~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~-~-~~~d~v~~l~~-G~ 214 (238)
T cd03249 139 QLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLST-I-RNADLIAVLQN-GQ 214 (238)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-hhCCEEEEEEC-CE
Confidence 799999999999999999999999999999999999999999999987 79999999999863 4 48999999987 68
Q ss_pred EEEeCCC
Q 000913 1087 EIYVGPL 1093 (1226)
Q Consensus 1087 ~~y~G~~ 1093 (1226)
+++.|+.
T Consensus 215 i~~~~~~ 221 (238)
T cd03249 215 VVEQGTH 221 (238)
T ss_pred EEEeCCH
Confidence 8988874
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=318.91 Aligned_cols=203 Identities=21% Similarity=0.353 Sum_probs=162.7
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-----CCCCceeEEEEcCccCCCC-----CccceEEEecCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PTLKVSGTVTYNGHDMDEF-----VPQRTAAYISQHD 235 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-----~~~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d 235 (1226)
.+|+|+|+.|++|++++|+|||||||||||++|+|..+ |+ +|+|.++|.++... ..++.++||+|++
T Consensus 53 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 129 (286)
T PRK14275 53 EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHT---TGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129 (286)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCC---ceEEEECCEEhhhcccchHHhhhcEEEECCCC
Confidence 39999999999999999999999999999999999854 35 99999999886432 1245799999998
Q ss_pred CCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc----cc
Q 000913 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD----VC 311 (1226)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~ 311 (1226)
.+++ .||+||+.|+....+.... + .....+..+++.+|+. +.
T Consensus 130 ~l~~-~tv~enl~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~l~~~ 175 (286)
T PRK14275 130 NPFP-KSIFDNIAYGPRLHGINDK-K--------------------------------QLEEIVEKSLRKAALWDEVSDR 175 (286)
T ss_pred CCCc-cCHHHHHHhHHHhcCCCcH-H--------------------------------HHHHHHHHHHHHhCCccchhhH
Confidence 7777 4999999987543221000 0 0011234556667763 22
Q ss_pred ccccccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhh
Q 000913 312 ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391 (1226)
Q Consensus 312 ~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~ 391 (1226)
.+ ..+..|||||||||+||+||+.+|++|||||||+|||+.+...+.+.|+++.. + .+||.++|+..++.++
T Consensus 176 ~~-----~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~-~tvIivsH~~~~~~~~ 247 (286)
T PRK14275 176 LD-----KNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--S-YTIMIVTHNMQQASRV 247 (286)
T ss_pred hh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEeCCHHHHHHh
Confidence 23 33557999999999999999999999999999999999999999999998743 3 4566678888999999
Q ss_pred cCcEEEEcCCeEEEecChhHHH
Q 000913 392 FDDIILLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 392 ~D~iilL~~G~iv~~G~~~~~~ 413 (1226)
+|++++|++|++++.|+++++.
T Consensus 248 ~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 248 SDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred CCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999988764
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=307.23 Aligned_cols=194 Identities=24% Similarity=0.292 Sum_probs=161.2
Q ss_pred EEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccCCh
Q 000913 857 TFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ 936 (1226)
Q Consensus 857 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 936 (1226)
+++|+++.++ .+.+|+|+|+++++|++++|+||||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (198)
T TIGR01189 2 AARNLACSRG-------------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAE 66 (198)
T ss_pred EEEEEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEccc
Confidence 4667776653 3469999999999999999999999999999999999876 468999999987532
Q ss_pred --hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 000913 937 --ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1226)
Q Consensus 937 --~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~LSgGqrq 1014 (1226)
..+++.++|++|++.+++.+||.|++.+....+. . + ++.+.++++.+++.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 134 (198)
T TIGR01189 67 QRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQR 134 (198)
T ss_pred chHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHH
Confidence 2345678999999888888999999987643321 1 1 235788999999988776654 569999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEE
Q 000913 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1080 (1226)
Q Consensus 1015 rl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~l 1080 (1226)
|++||++|+.+|++|+|||||+|||+.++..+++.|+++.++|.|||+++|++.. + .+++++.
T Consensus 135 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~-~--~~~~~~~ 197 (198)
T TIGR01189 135 RLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG-L--VEARELR 197 (198)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc-c--cceEEee
Confidence 9999999999999999999999999999999999999987789999999999852 2 3466553
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=314.14 Aligned_cols=211 Identities=21% Similarity=0.324 Sum_probs=165.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCceeEEEEcCccCCCCC-----ccceEEEecCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD--PTLKVSGTVTYNGHDMDEFV-----PQRTAAYISQHDNHI 238 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~I~~nG~~~~~~~-----~~~~~~yv~Q~d~~~ 238 (1226)
++|+|+||.|++|++++|+||||||||||+++|+|..+ |+...+|+|+++|.++.... .++.++|++|++.++
T Consensus 19 ~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 98 (251)
T PRK14244 19 QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPF 98 (251)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccc
Confidence 49999999999999999999999999999999999976 21112899999998764321 246799999998777
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 000913 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1226)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1226)
+. ||+||+.++....+..... .+....++.+++.+||.+...+.+ +
T Consensus 99 ~~-tv~~ni~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 144 (251)
T PRK14244 99 PK-SIYDNVAYGPKLHGLAKNK--------------------------------KKLDEIVEKSLTSVGLWEELGDRL-K 144 (251)
T ss_pred cC-CHHHHHHHHHHhcCCCCCH--------------------------------HHHHHHHHHHHHHcCCCchhhhHh-h
Confidence 75 9999998864322110000 001123456788889865322222 2
Q ss_pred cccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEE
Q 000913 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1226)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1226)
..+..|||||||||+||++|+.+|+++||||||+|||..+...+.+.|+++. .+ .+|+.++|+..++.+++|+|++|
T Consensus 145 ~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiiiisH~~~~~~~~~d~i~~l 221 (251)
T PRK14244 145 DSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK--KN-FTIIVVTHSMKQAKKVSDRVAFF 221 (251)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHhhcCEEEEE
Confidence 3456799999999999999999999999999999999999999999999873 34 45555778888999999999999
Q ss_pred cCCeEEEecChhHHH
Q 000913 399 SDGQIVYQGPRELVL 413 (1226)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1226)
++|++++.|+++++.
T Consensus 222 ~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 222 QSGRIVEYNTTQEIF 236 (251)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988763
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=314.94 Aligned_cols=212 Identities=22% Similarity=0.297 Sum_probs=167.6
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCC-----CccceEEEecCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT--LKVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1226)
.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ ...+|+|.++|+++... ..++.++|++|+..++
T Consensus 21 ~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~ 100 (261)
T PRK14258 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLF 100 (261)
T ss_pred eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccC
Confidence 4899999999999999999999999999999999999873 12479999999886321 1245799999988777
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 000913 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1226)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1226)
+ +||+||+.+.....+.... .+....+..+++.+++.+..+... +
T Consensus 101 ~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 145 (261)
T PRK14258 101 P-MSVYDNVAYGVKIVGWRPK---------------------------------LEIDDIVESALKDADLWDEIKHKI-H 145 (261)
T ss_pred c-ccHHHHHHHHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCcchhhhHh-c
Confidence 7 8999999886432211000 001123456777888754222111 2
Q ss_pred cccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEE
Q 000913 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1226)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1226)
+.+..||||||||++||++|+.+|++++|||||+|||..+...+.+.|++++...+ ++||.++|+..++.+++|+|++|
T Consensus 146 ~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~-~tiiivsH~~~~i~~~~d~i~~l 224 (261)
T PRK14258 146 KSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSE-LTMVIVSHNLHQVSRLSDFTAFF 224 (261)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCC-CEEEEEECCHHHHHHhcCEEEEE
Confidence 34567999999999999999999999999999999999999999999998764334 45555778889999999999999
Q ss_pred cC-----CeEEEecChhHHH
Q 000913 399 SD-----GQIVYQGPRELVL 413 (1226)
Q Consensus 399 ~~-----G~iv~~G~~~~~~ 413 (1226)
++ |+++++|+++++.
T Consensus 225 ~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 225 KGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred ccCCCcCceEEEeCCHHHHH
Confidence 99 9999999999874
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=359.23 Aligned_cols=213 Identities=22% Similarity=0.319 Sum_probs=179.1
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000913 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1226)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1226)
..++++|++|.++. .++.+|+|+|++|++|+++||+|+||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 340 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~ 406 (582)
T PRK11176 340 GDIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD--IDEGEILLDGHD 406 (582)
T ss_pred CeEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC--CCCceEEECCEE
Confidence 46999999999852 12469999999999999999999999999999999999877 568999999988
Q ss_pred CCh---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCC
Q 000913 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGLP 1003 (1226)
Q Consensus 934 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~ 1003 (1226)
.++ ..+++.++||+|++.+++ -|++||+.++. +...+ ++.++++++.+++.+. .|+.+|..
T Consensus 407 i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~ 477 (582)
T PRK11176 407 LRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYS----REQIEEAARMAYAMDFINKMDNGLDTVIGEN 477 (582)
T ss_pred hhhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCC----HHHHHHHHHHhCcHHHHHhcccccCceeCCC
Confidence 653 456788999999998886 69999998741 11122 2346778888876553 35556654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 000913 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1226)
Q Consensus 1004 ~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~ 1083 (1226)
...||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +++|||+++|+++ ..+.||++++|++
T Consensus 478 -g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~ 553 (582)
T PRK11176 478 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVED 553 (582)
T ss_pred -CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEEC
Confidence 36799999999999999999999999999999999999999999999885 4799999999985 5778999999986
Q ss_pred CcEEEEeCCC
Q 000913 1084 GGQEIYVGPL 1093 (1226)
Q Consensus 1084 Gg~~~y~G~~ 1093 (1226)
|+++..|+.
T Consensus 554 -g~i~e~g~~ 562 (582)
T PRK11176 554 -GEIVERGTH 562 (582)
T ss_pred -CEEEEeCCH
Confidence 799999874
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=317.34 Aligned_cols=211 Identities=25% Similarity=0.375 Sum_probs=166.5
Q ss_pred eeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++++|+++.++. .+.+|+|+|+++++|++++|+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYDE------------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecCC------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeH
Confidence 4678888877631 2358999999999999999999999999999999999876 4689999999765
Q ss_pred Ch---hhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCccccccc-C-----CCCC
Q 000913 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV-G-----LPGV 1005 (1226)
Q Consensus 935 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~-g-----~~~~ 1005 (1226)
.. ..+++.++|++|++.+++. |++||+.+... ... ...+.+.++.+++.+..+... | ...+
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~-----~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRP-----NAT----DEEVIEAAKEAGAHDFIMKLPNGYDTVLGENG 137 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcccccCHhhcCC
Confidence 32 2356679999999887775 99999987421 111 122444555555544333221 0 0124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEecCc
Q 000913 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1226)
Q Consensus 1006 ~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~Gg 1085 (1226)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||++||++.. + +.+|++++|++ |
T Consensus 138 ~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~i~~l~~-g 213 (229)
T cd03254 138 GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-I-KNADKILVLDD-G 213 (229)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-hhCCEEEEEeC-C
Confidence 6899999999999999999999999999999999999999999999985 58999999999863 4 56999999986 6
Q ss_pred EEEEeCCC
Q 000913 1086 QEIYVGPL 1093 (1226)
Q Consensus 1086 ~~~y~G~~ 1093 (1226)
++++.|+.
T Consensus 214 ~~~~~~~~ 221 (229)
T cd03254 214 KIIEEGTH 221 (229)
T ss_pred eEEEeCCH
Confidence 88888763
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=294.35 Aligned_cols=212 Identities=25% Similarity=0.358 Sum_probs=183.5
Q ss_pred cccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCcc---ceEEEecCCCCCC
Q 000913 162 KRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYISQHDNHI 238 (1226)
Q Consensus 162 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~~---~~~~yv~Q~d~~~ 238 (1226)
...+.||+|+|..|++|.+|+++|||||||||||.+++++++.+ +|+|+++|.++.....+ +.++.+-|+....
T Consensus 11 y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~ 87 (252)
T COG4604 11 YGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKELAKKLSILKQENHIN 87 (252)
T ss_pred hCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChHHHHHHHHHHHhhchhh
Confidence 35567999999999999999999999999999999999999988 99999999998776543 6788899988888
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 000913 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1226)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1226)
..+||+|-+.|+.--..-|. ...+.+..++..++.|.|++..|.
T Consensus 88 ~rlTV~dLv~FGRfPYSqGR--------------------------------lt~eD~~~I~~aieyl~L~~l~dr---- 131 (252)
T COG4604 88 SRLTVRDLVGFGRFPYSQGR--------------------------------LTKEDRRIINEAIEYLHLEDLSDR---- 131 (252)
T ss_pred heeEHHHHhhcCCCcccCCC--------------------------------CchHHHHHHHHHHHHhcccchHHH----
Confidence 89999999999852211110 112234467888999999887774
Q ss_pred cccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEE
Q 000913 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1226)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1226)
+..+||||||||.-||..++++.+.++||||.++||...+.++++.|+++++..++|+|+ +.|+-..+..++|.|+-|
T Consensus 132 -yLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~Ktivi-VlHDINfAS~YsD~IVAl 209 (252)
T COG4604 132 -YLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVV-VLHDINFASCYSDHIVAL 209 (252)
T ss_pred -hHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEE-EEecccHHHhhhhheeee
Confidence 456799999999999999999999999999999999999999999999999988888777 567889999999999999
Q ss_pred cCCeEEEecChhHHHH
Q 000913 399 SDGQIVYQGPRELVLE 414 (1226)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1226)
.+|+++.+|+++++.+
T Consensus 210 K~G~vv~~G~~~eii~ 225 (252)
T COG4604 210 KNGKVVKQGSPDEIIQ 225 (252)
T ss_pred cCCEEEecCCHHHhcC
Confidence 9999999999998863
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=317.35 Aligned_cols=206 Identities=25% Similarity=0.320 Sum_probs=168.8
Q ss_pred ceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc------cceEEEecCCC--C
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHD--N 236 (1226)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~------~~~~~yv~Q~d--~ 236 (1226)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++|++|++ .
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 101 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS---QGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISA 101 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEeccccChhHHHHHHhcEEEEEcChhhc
Confidence 46999999999999999999999999999999999999987 9999999998765432 35799999986 3
Q ss_pred CCCCCCHHHHHHHHhHhc-CCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCc-ccccc
Q 000913 237 HIGEMTVRETLAFSARCQ-GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADT 314 (1226)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 314 (1226)
+.+..|++|++.+..... ... ..+....++.+++.+|+. ...++
T Consensus 102 ~~~~~t~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~~~~ 147 (268)
T PRK10419 102 VNPRKTVREIIREPLRHLLSLD----------------------------------KAERLARASEMLRAVDLDDSVLDK 147 (268)
T ss_pred cCCCCCHHHHHHHHHHhhccCC----------------------------------HHHHHHHHHHHHHHcCCChhHhhC
Confidence 667899999997653210 000 001112456778899996 34444
Q ss_pred cccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCc
Q 000913 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394 (1226)
Q Consensus 315 ~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1226)
..+.||||||||++||++|+.+|++|||||||+|||..+...+.+.|+++.+.. +++||.++|+..++.+++|+
T Consensus 148 -----~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~-~~tiiivsH~~~~i~~~~d~ 221 (268)
T PRK10419 148 -----RPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQF-GTACLFITHDLRLVERFCQR 221 (268)
T ss_pred -----CCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHc-CcEEEEEECCHHHHHHhCCE
Confidence 345699999999999999999999999999999999999999999999876533 45556678888899999999
Q ss_pred EEEEcCCeEEEecChhHHH
Q 000913 395 IILLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 395 iilL~~G~iv~~G~~~~~~ 413 (1226)
+++|++|++++.|+.+++.
T Consensus 222 i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 222 VMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred EEEEECCEEeeeCChhhcc
Confidence 9999999999999988764
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=310.63 Aligned_cols=210 Identities=23% Similarity=0.274 Sum_probs=167.3
Q ss_pred eEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEc--Cc-
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITIS--GY- 932 (1226)
Q Consensus 856 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~--g~- 932 (1226)
++++|+++.++.... ...++.+|+|+|++|++||+++|+|+||||||||+++|+|... +..|+|.++ |.
T Consensus 2 l~~~~l~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEEecCCCc
Confidence 567888877742100 0012469999999999999999999999999999999999876 457999998 42
Q ss_pred -cCCh---hh----hcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCC
Q 000913 933 -PKKQ---ET----FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQSLVGLP 1003 (1226)
Q Consensus 933 -~~~~---~~----~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~g~~ 1003 (1226)
+... .. .++.++|++|++.+++.+||+|++.+..... ........+.+.++++.+++.+. .+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 146 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLP---- 146 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC----
Confidence 3211 11 2346899999998999999999998864322 12333445567889999999753 3443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEe
Q 000913 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1226)
Q Consensus 1004 ~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~ 1082 (1226)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. .+.+.+|+++.+.
T Consensus 147 -~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 147 -PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 4579999999999999999999999999999999999999999999999877999999999975 3667899998764
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=318.81 Aligned_cols=198 Identities=23% Similarity=0.233 Sum_probs=159.4
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1226)
.+|+|||+.|++||+++|+|||||||||||++|+|.++ . +|+|.++|.++..... ++.++||+|++.+++ .|
T Consensus 18 ~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~-~t 92 (275)
T cd03289 18 AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFS-GT 92 (275)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHHHHhhhEEEECCCcccch-hh
Confidence 38999999999999999999999999999999999997 5 8999999998765432 467999999988876 59
Q ss_pred HHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCC-------ccccccc
Q 000913 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL-------DVCADTM 315 (1226)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~dt~ 315 (1226)
|+||+.+... ...+.. ...++.+|| +..+|+.
T Consensus 93 v~~nl~~~~~-----~~~~~~------------------------------------~~~l~~~gL~~~~~~~p~~l~~~ 131 (275)
T cd03289 93 FRKNLDPYGK-----WSDEEI------------------------------------WKVAEEVGLKSVIEQFPGQLDFV 131 (275)
T ss_pred HHHHhhhccC-----CCHHHH------------------------------------HHHHHHcCCHHHHHhCcccccce
Confidence 9999963211 011111 112222333 3456677
Q ss_pred ccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcE
Q 000913 316 VGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395 (1226)
Q Consensus 316 vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~i 395 (1226)
+++ ....||||||||++||||++.+|+|++|||||++||+.+...+.+.|++.. .+ ++||.++|+...+. .+|+|
T Consensus 132 ~~~-~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~~-~tii~isH~~~~i~-~~dri 206 (275)
T cd03289 132 LVD-GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--AD-CTVILSEHRIEAML-ECQRF 206 (275)
T ss_pred ecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CC-CEEEEEECCHHHHH-hCCEE
Confidence 776 456799999999999999999999999999999999999999999999752 34 45566777776665 59999
Q ss_pred EEEcCCeEEEecChhHHHH
Q 000913 396 ILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1226)
++|++|++++.|++++++.
T Consensus 207 ~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 207 LVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred EEecCCeEeecCCHHHHhh
Confidence 9999999999999999864
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=344.45 Aligned_cols=213 Identities=24% Similarity=0.348 Sum_probs=178.0
Q ss_pred ceeEEeceeeEEeccchhhhcccccCceEEeecccccccCCeEEEEEccCCCcHHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000913 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1226)
Q Consensus 854 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1226)
..++++||+|+++. .++.+|+|+|+++++||+++|+|+||||||||+++|+|... +.+|+|.+||.+
T Consensus 329 ~~i~~~~v~f~y~~-----------~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~--~~~G~I~i~g~~ 395 (571)
T TIGR02203 329 GDVEFRNVTFRYPG-----------RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE--PDSGQILLDGHD 395 (571)
T ss_pred CeEEEEEEEEEcCC-----------CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEe
Confidence 46999999999852 12358999999999999999999999999999999999876 568999999987
Q ss_pred CC---hhhhcceeeEeecCCCCCCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 000913 934 KK---QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLP 1003 (1226)
Q Consensus 934 ~~---~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~~g~~ 1003 (1226)
++ ...+++.++||+|++.+++ -|++|||.++. +.+.+ ++.++++++.+++.+.. |+.+|..
T Consensus 396 i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~ 466 (571)
T TIGR02203 396 LADYTLASLRRQVALVSQDVVLFN-DTIANNIAYGR----TEQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGEN 466 (571)
T ss_pred HHhcCHHHHHhhceEEccCccccc-ccHHHHHhcCC----CCCCC----HHHHHHHHHHcChHHHHHhCcCcccceecCC
Confidence 54 3456778999999998775 59999998752 11223 23477888888886543 3445544
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcHHHHHhcCeEEEEec
Q 000913 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1226)
Q Consensus 1004 ~~~~LSgGqrqrl~ia~~L~~~p~il~LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~H~p~~~i~~~~D~v~ll~~ 1083 (1226)
...||||||||++|||+|+++|+||+||||||+||+.+++.+++.|+++. +++|||++||+++ ..+.||++++|++
T Consensus 467 -g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~~ 542 (571)
T TIGR02203 467 -GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMDD 542 (571)
T ss_pred -CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEeC
Confidence 35799999999999999999999999999999999999999999999885 4799999999985 5788999999986
Q ss_pred CcEEEEeCCC
Q 000913 1084 GGQEIYVGPL 1093 (1226)
Q Consensus 1084 Gg~~~y~G~~ 1093 (1226)
|+++..|+.
T Consensus 543 -g~i~~~g~~ 551 (571)
T TIGR02203 543 -GRIVERGTH 551 (571)
T ss_pred -CEEEeeCCH
Confidence 788888863
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=315.39 Aligned_cols=210 Identities=21% Similarity=0.275 Sum_probs=163.8
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CceeEEEEcCccCCCC-----CccceEEEecCCCCCC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--KVSGTVTYNGHDMDEF-----VPQRTAAYISQHDNHI 238 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1226)
++|+|+|+++++|++++|+|+|||||||||++|+|.++++. ..+|+|.++|+++... ..++.++|++|++.++
T Consensus 21 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 100 (259)
T PRK14260 21 KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPF 100 (259)
T ss_pred EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccC
Confidence 48999999999999999999999999999999999987531 1389999999887431 1235799999998878
Q ss_pred CCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccccccccc
Q 000913 239 GEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGD 318 (1226)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1226)
+ +||+||+.++....+.... .+....++.+++.+|+....... -+
T Consensus 101 ~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~-~~ 145 (259)
T PRK14260 101 P-MSIYENVAYGVRISAKLPQ---------------------------------ADLDEIVESALKGAALWQEVKDK-LN 145 (259)
T ss_pred C-ccHHHHHHHHHHHhcCCCH---------------------------------HHHHHHHHHHHHHcCCcchhhhH-hc
Confidence 7 8999999886543210000 00112244556777763211111 12
Q ss_pred cccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHhhcCcEEEE
Q 000913 319 EMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398 (1226)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~iilL 398 (1226)
..+..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.. + .+|+.++|+..++.+++|++++|
T Consensus 146 ~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiii~tH~~~~i~~~~d~i~~l 222 (259)
T PRK14260 146 KSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--E-LTIAIVTHNMQQATRVSDFTAFF 222 (259)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhcCeEEEE
Confidence 34567999999999999999999999999999999999999999999998742 3 45566788889999999999999
Q ss_pred c-----CCeEEEecChhHHH
Q 000913 399 S-----DGQIVYQGPRELVL 413 (1226)
Q Consensus 399 ~-----~G~iv~~G~~~~~~ 413 (1226)
+ +|+++++|+++++.
T Consensus 223 ~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 223 STDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred eccCCCCceEEEeCCHHHHh
Confidence 8 59999999998863
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=356.39 Aligned_cols=227 Identities=25% Similarity=0.369 Sum_probs=171.4
Q ss_pred hHhhHHHHHHhhhccccChHHHHHHHHHHhh--hcCCCCCcceEEEeeeEEEEEEecCCCcCCchhHHHHHHHHHHHhHh
Q 000913 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRID--RVGIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYL 155 (1226)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 155 (1226)
.++.....+|+.++++.+++ ..+... ....+....+++|+||+|.++.
T Consensus 297 ~~~~~~~~~ri~~~l~~~~~-----~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~------------------------- 346 (529)
T TIGR02868 297 LTRVRAAAERIEEVTGAKGP-----RPEGVVPAAGALGLGKPTLELRDLSFGYPG------------------------- 346 (529)
T ss_pred HHHHHHHHHHHHHHhcCCCC-----cCCCCCCCCcccCCCCceEEEEEEEEecCC-------------------------
Confidence 56778888999888876554 111000 0001112357999999999832
Q ss_pred hhcCCCcccceEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEec
Q 000913 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYIS 232 (1226)
Q Consensus 156 ~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~~~~~~~---~~~~~yv~ 232 (1226)
+ .++|+|+|++++||+.++|+||||||||||+++|+|+++|+ +|+|.+||.++++. . ++.++||+
T Consensus 347 -----~---~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~i~g~~i~~~-~~~lr~~i~~V~ 414 (529)
T TIGR02868 347 -----S---PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL---QGEVTLDGVSVSSL-QDELRRRISVFA 414 (529)
T ss_pred -----C---CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhH-HHHHHhheEEEc
Confidence 1 13999999999999999999999999999999999999998 99999999998877 4 36899999
Q ss_pred CCCCCCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcccc
Q 000913 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (1226)
Q Consensus 233 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1226)
|++.+| +.||+|||.++.. ....+.+.++++... + ++. +..|++..
T Consensus 415 Q~~~lF-~~TI~eNI~~g~~----~~~~e~i~~al~~a~---l------------------------~~~--i~~lp~Gl 460 (529)
T TIGR02868 415 QDAHLF-DTTVRDNLRLGRP----DATDEELWAALERVG---L------------------------ADW--LRSLPDGL 460 (529)
T ss_pred cCcccc-cccHHHHHhccCC----CCCHHHHHHHHHHcC---C------------------------HHH--HHhCcccc
Confidence 977655 5699999998631 112222333222211 0 111 23478889
Q ss_pred cccccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEec
Q 000913 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQ 383 (1226)
Q Consensus 313 dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q 383 (1226)
||.||+.+. .||||||||++||||++++|+||+||||||+||+.++..|.+.|++.. .++|+|++.|+
T Consensus 461 dT~ige~G~-~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~--~~~TvIiItHr 528 (529)
T TIGR02868 461 DTVLGEGGA-RLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL--SGKTVVVITHH 528 (529)
T ss_pred cchhccccC-cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEecC
Confidence 999998765 599999999999999999999999999999999999999999998742 45666665443
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=313.64 Aligned_cols=206 Identities=25% Similarity=0.358 Sum_probs=164.5
Q ss_pred eEeeceeEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCcc-----CCCCCc-------cceEEEecC
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD-----MDEFVP-------QRTAAYISQ 233 (1226)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~nG~~-----~~~~~~-------~~~~~yv~Q 233 (1226)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.+ +..... ++.++|++|
T Consensus 17 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q 93 (253)
T TIGR02323 17 KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQ 93 (253)
T ss_pred eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEEecccccccccccCCHHHHHHhhhcceEEEEe
Confidence 3899999999999999999999999999999999999998 9999999976 543321 245899999
Q ss_pred CCC--CCCCCCHHHHHHHHhHhcCCCchhhHhHHHHHHHHhcCCCCCCChHHHHHHHhhhhhhhHHHHHHHHHHcCCcc-
Q 000913 234 HDN--HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV- 310 (1226)
Q Consensus 234 ~d~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~- 310 (1226)
++. ..+.+|+.||+.+....... .... +....++.+++.+|+..
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~--------------------------------~~~~~~~~~l~~l~l~~~ 140 (253)
T TIGR02323 94 NPRDGLRMRVSAGANIGERLMAIGA-RHYG--------------------------------NIRAAAHDWLEEVEIDPT 140 (253)
T ss_pred CcccccCccccHHHHHHHHHHHhcc-cchH--------------------------------HHHHHHHHHHHHcCCChh
Confidence 864 45667999999764311100 0000 01123567788999963
Q ss_pred cccccccccccCCCChhHhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEEecChhhHHh
Q 000913 311 CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390 (1226)
Q Consensus 311 ~~dt~vg~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~ 390 (1226)
..++. ++.|||||||||+||+||+.+|++|+|||||+|||+.+...+.+.|+++....+ .+||.++|+..++..
T Consensus 141 ~~~~~-----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tii~vsH~~~~~~~ 214 (253)
T TIGR02323 141 RIDDL-----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLG-LAVIIVTHDLGVARL 214 (253)
T ss_pred hhhcC-----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHH
Confidence 44544 456999999999999999999999999999999999999999999998765334 455557788889999
Q ss_pred hcCcEEEEcCCeEEEecChhHHH
Q 000913 391 LFDDIILLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 391 ~~D~iilL~~G~iv~~G~~~~~~ 413 (1226)
.+|++++|++|++++.|+.+++.
T Consensus 215 ~~d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 215 LAQRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred hcCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999988764
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1226 | ||||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 8e-11 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-10 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 3e-10 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 3e-10 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 3e-10 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-10 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 3e-10 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 6e-10 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 7e-10 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 7e-10 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 7e-10 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 7e-10 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-09 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 4e-09 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 4e-09 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 1e-08 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-08 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 3e-08 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 5e-08 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 6e-08 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 6e-08 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 1e-07 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 1e-07 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-07 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-07 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-07 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-07 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 3e-07 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 6e-07 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 7e-07 | ||
| 1g29_1 | 372 | Malk Length = 372 | 8e-07 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 8e-07 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-06 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 2e-06 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-06 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 3e-06 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 3e-06 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 5e-06 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 7e-06 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 7e-06 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 8e-06 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 8e-06 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 9e-06 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 9e-06 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 1e-05 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 1e-05 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 1e-05 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 2e-05 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-05 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 2e-05 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-05 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 3e-05 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 3e-05 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-05 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 3e-05 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 4e-04 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 7e-05 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 7e-05 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 7e-05 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 8e-05 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 1e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 2e-04 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 2e-04 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 2e-04 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-04 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 2e-04 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 2e-04 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 3e-04 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 3e-04 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-04 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 3e-04 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 3e-04 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 4e-04 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 8e-04 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 8e-04 |
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1226 | |||
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 1e-25 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 3e-16 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 8e-23 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 2e-16 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 1e-22 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 6e-17 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 4e-22 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-18 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 5e-20 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 5e-14 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-10 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 9e-10 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-19 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 3e-13 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 5e-13 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 9e-09 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 2e-19 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 2e-18 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 2e-18 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 4e-15 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-18 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 1e-13 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-18 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-12 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-10 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-07 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-17 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 8e-12 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-10 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 4e-10 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 1e-16 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 2e-15 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-15 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 9e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-09 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 4e-13 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 5e-12 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 6e-13 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 9e-07 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 7e-13 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 8e-07 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 6e-11 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 1e-04 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 3e-10 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 1e-05 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 5e-10 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 5e-05 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 8e-04 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 5e-10 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-05 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 5e-10 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 2e-07 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 8e-10 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 9e-10 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 5e-04 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 1e-09 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 3e-06 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 2e-09 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-07 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 1e-08 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 6e-06 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 1e-08 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 7e-07 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 1e-08 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 4e-05 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 2e-08 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 7e-07 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 2e-08 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 2e-06 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 2e-08 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 3e-05 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 4e-08 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 1e-06 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 2e-07 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 2e-07 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 2e-06 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 4e-07 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 4e-07 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 6e-06 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 6e-07 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 1e-05 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 9e-07 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 1e-06 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 2e-04 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-06 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 2e-06 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 3e-05 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 3e-04 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 1e-04 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 2e-04 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 8e-04 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 5e-04 |
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 16/186 (8%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGY-PKKQETFA 940
L G+S G + L+G +GAGKTT + +++ + + G +T+ G ++
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG----IVTVFGKNVVEEPHEV 86
Query: 941 RIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
R Y + + E L F A S + E ++ E+ L +
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM---VERATEIAGLGEKIKDR 143
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
V S ++L IA L+ NP + +DEPTSGLD A V + ++ G T
Sbjct: 144 VS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 1060 VVCTIH 1065
++ + H
Sbjct: 199 ILVSSH 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 3e-16
Identities = 55/259 (21%), Positives = 90/259 (34%), Gaps = 65/259 (25%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE--- 221
ILK +S I+ G + L+GP +GKTT L ++ + P+ SG VT G ++ E
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPH 84
Query: 222 -------FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
++P+ AY M E L F A
Sbjct: 85 EVRKLISYLPEEAGAY--------RNMQGIEYLRFVAGFYAS------------------ 118
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334
E + + ++ GL + + S G +++
Sbjct: 119 ----------------SSSEIEEMVERATEIAGL-----GEKIKDRVSTYSKGMVRKLLI 157
Query: 335 GEMMVG-PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393
++ P L +DE ++GLD ++ L+Q G ++ E L D
Sbjct: 158 ARALMVNPRL-AILDEPTSGLDVLNAREVRKILKQ--ASQEGLTILVSSHNMLEVEFLCD 214
Query: 394 DIILLSDGQIVYQG-PREL 411
I L+ +G IV G EL
Sbjct: 215 RIALIHNGTIVETGTVEEL 233
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 8e-23
Identities = 51/239 (21%), Positives = 97/239 (40%), Gaps = 41/239 (17%)
Query: 867 MPEEMKVQGVL---EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG 921
M + + V+ + + + L ++ G + A++G +G GK+TL+D+L G R G
Sbjct: 1 MNKALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQG 60
Query: 922 YITGNITISGYPKKQETFARISGYCEQNDIHSPF-VTIYESLLF------SAWLRLSPEV 974
I + G+ Q SPF ++ + +L + + +
Sbjct: 61 KIE--------------VYQSIGFVPQF-FSSPFAYSVLDIVLMGRSTHINTFAKPKSH- 104
Query: 975 DSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1034
D + + ++ + L L + + LS QR+ + IA + + +I +DEP
Sbjct: 105 DYQV----AMQALDYLNLTHLAKREF-----TSLSGGQRQLILIARAIASECKLILLDEP 155
Query: 1035 TSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092
TS LD IV+ + + TVV T HQP+ + ++ L+ + G
Sbjct: 156 TSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ-VVAIANKTLLLNKQ--NFKFGE 211
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 2e-16
Identities = 36/254 (14%), Positives = 80/254 (31%), Gaps = 63/254 (24%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+ + ++ + G + +LG GK+TLL L G P G +
Sbjct: 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEVY---------- 65
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
++ ++ Q + +V + + G ++
Sbjct: 66 QSIGFVPQFFSSPFAYSVLDIVLM------------------------GRST------HI 95
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA- 344
A + L L L A +SGGQ++ + ++ A+A
Sbjct: 96 NTFAKPKSHDYQVAMQALDYLNLTHLAKREFTS-----LSGGQRQLI-----LIARAIAS 145
Query: 345 ----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISL--LQPAPETYDLFDDIILL 398
+ +DE ++ LD + +++ L + T V + + + +LL
Sbjct: 146 ECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVA---IANKTLLL 202
Query: 399 SDGQIVYQGPRELV 412
+ + R ++
Sbjct: 203 NKQNFKFGETRNIL 216
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 96.8 bits (242), Expect = 1e-22
Identities = 38/205 (18%), Positives = 80/205 (39%), Gaps = 27/205 (13%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GNITISGYPKKQETFA 940
L ++ G + G +G GKTTL+ ++ Y+ G I +G P +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTIST-----YLKPLKGEIIYNGVPIT-KVKG 78
Query: 941 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 1000
+I + + I +++ + L A L K I + +E VE+ L++
Sbjct: 79 KI-FFLPEEIIVPRKISVEDYLKAVASLYGVKV-----NKNEIMDALESVEVLDLKKK-- 130
Query: 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRT 1059
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G
Sbjct: 131 ----LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 186
Query: 1060 VVCTIHQPSIDIFEAFDELFLMKRG 1084
++ + D + +
Sbjct: 187 IISSRE-----ELSYCDVNENLHKY 206
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 6e-17
Identities = 39/255 (15%), Positives = 77/255 (30%), Gaps = 66/255 (25%)
Query: 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
S +L+ ++ I+ G + GP GKTTLL ++ L P G + YNG +
Sbjct: 17 SVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPI 73
Query: 220 DE------FVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273
+ F+P+ +++V + L A GV + +
Sbjct: 74 TKVKGKIFFLPEEIIVP--------RKISVEDYLKAVASLYGVKVNKNEIMDA------- 118
Query: 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT 333
L+ + + + +S G +RV
Sbjct: 119 -----------------------------LESVEVLDLKKK------LGELSQGTIRRVQ 143
Query: 334 TGEMMVG-PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392
++ + +D+ +D + +++ + I G +IS + E
Sbjct: 144 LASTLLVNAEI-YVLDDPVVAIDEDSKHKVLKSIL-EILKEKGIVIIS----SREELSYC 197
Query: 393 DDIILLSDGQIVYQG 407
D L
Sbjct: 198 DVNENLHKYSTKIDK 212
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 4e-22
Identities = 40/214 (18%), Positives = 78/214 (36%), Gaps = 31/214 (14%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIT-GNITISGYPKKQETFA 940
L +SG R G + L+G +GAGK+TL+ +AG G I + + + A
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK--LA 72
Query: 941 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 1000
Y Q ++ L + +E +++V + L+
Sbjct: 73 LHRAYLSQQQTPPFATPVWHYLTLH----QHDKTRTEL----LNDVAGALALDDKLGRST 124
Query: 1001 GLPGVSGLSTEQRKRLTIA-------VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053
+ LS + +R+ +A + ++ +DEP + LD + + + +
Sbjct: 125 -----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 179
Query: 1054 VDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1084
G +V + H D+ +L+K G
Sbjct: 180 SQQGLAIVMSSH----DLNHTLRHAHRAWLLKGG 209
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 2e-18
Identities = 52/265 (19%), Positives = 84/265 (31%), Gaps = 74/265 (27%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T L +SG ++ G + L+GP +GK+TLL +AG + G++ + G ++ +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSG---KGSIQFAGQPLEAWSAT 69
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ A AY+SQ V L +
Sbjct: 70 KLALHRAYLSQQQTPPFATPVWHYLTL------------------------HQHDKTRTE 105
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV--------TT 334
+ L LD +SGG+ +RV T
Sbjct: 106 LLNDVAGA---------------LALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQIT 145
Query: 335 GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL--- 391
+ L L +DE LD + + L G A++ +DL
Sbjct: 146 PQANPAGQL-LLLDEPMNSLDVAQQSALDKILSA--LSQQGLAIVMSS------HDLNHT 196
Query: 392 ---FDDIILLSDGQIVYQGPRELVL 413
LL G+++ G RE VL
Sbjct: 197 LRHAHRAWLLKGGKMLASGRREEVL 221
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 5e-20
Identities = 43/224 (19%), Positives = 81/224 (36%), Gaps = 35/224 (15%)
Query: 847 MVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLV------LLNGVSGAFRPGVLTALM 900
L F +L F + D+ + + L +LN G F + +M
Sbjct: 325 ENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMM 384
Query: 901 GVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTI 958
G +G GKTTL+ +LAG + G + +S P+K + F
Sbjct: 385 GENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQK-------IAPKFPGTVRQLF--- 434
Query: 959 YESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTI 1018
++ + F +V++ + ++ + V LS + +R+ I
Sbjct: 435 FKKI-----------RGQFLNPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAI 478
Query: 1019 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1061
+ L I +DEP++ LD+ I + +R + +T
Sbjct: 479 VLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 5e-14
Identities = 36/183 (19%), Positives = 71/183 (38%), Gaps = 21/183 (11%)
Query: 892 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIT---ISGYPKKQETFARISGYC 946
RPG + L+G +G GK+T + +LAG + G I Y + E +
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 947 EQND---IHSPFV-----TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
E + I +V I + L ++ E + +++++L + +
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELL---KLRMEKSPEDVKRYIKILQLENVLKR 217
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1058
+ LS + +R I + V + DEP+S LD + + +R+ + +
Sbjct: 218 -----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTK 272
Query: 1059 TVV 1061
V+
Sbjct: 273 YVI 275
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 2e-10
Identities = 40/264 (15%), Positives = 76/264 (28%), Gaps = 77/264 (29%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL--------KVSGTVTYNGH 217
+ +PG++ L+G GK+T L LAGK P L + G
Sbjct: 91 SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGS 150
Query: 218 DMDEFVP-----QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272
++ + A Q+ ++I ++ + + + ++ R K
Sbjct: 151 ELQNYFTKMLEDDIKAIIKPQYVDNIP-RAIKGPVQKVGELLKL-RMEKSPEDVKRYIKI 208
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV 332
++ + ++ L SGG+ +R
Sbjct: 209 LQLEN--------------------VLKRDIEKL------------------SGGELQRF 230
Query: 333 TTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------SL 381
+G + DE S+ LD +R + VI S+
Sbjct: 231 -----AIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRS-LL-APTKYVICVEHDLSV 283
Query: 382 LQPAPETYDLFDDIILLSDGQIVY 405
L L D + ++ VY
Sbjct: 284 LD------YLSDFVCIIYGVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 9e-10
Identities = 52/297 (17%), Positives = 86/297 (28%), Gaps = 88/297 (29%)
Query: 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
K + +L G + +++G +GKTTL+ LAG L P G
Sbjct: 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------- 409
Query: 220 DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+P+ + Q TVR+ R + + +
Sbjct: 410 ---IPKLNVSMKPQKIAPKFPGTVRQLFFKKIR-----------GQFLNPQFQTDV---- 451
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
+K L +D D V +SGG+ +RV +
Sbjct: 452 -----------------------VKPLRIDDIIDQEVQH-----LSGGELQRVAIVLALG 483
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------SLLQPAPETYDLFD 393
PA +DE S LDS +R+ +++ + L D
Sbjct: 484 IPADIYLIDEPSAYLDSEQRIICSKVIRR-FILHNKKTAFIVEHDFIMAT------YLAD 536
Query: 394 DIILLSDGQIVY---QGPRELVLEFFASMGFRCPKRKGVADFLQE--VTSRKDQRQY 445
+I+ + P L G FL+ VT R+D +
Sbjct: 537 KVIVFEGIPSKNAHARAPESL--------------LTGCNRFLKNLNVTFRRDPNSF 579
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 2e-19
Identities = 55/244 (22%), Positives = 97/244 (39%), Gaps = 32/244 (13%)
Query: 824 GQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDK--- 880
G S + E + K + F P+ + F ++ VD+ E V+ K
Sbjct: 309 GIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYG 368
Query: 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQET 938
L G R G + ++G +G GKTT + +LAG T G + ++T++ K Q
Sbjct: 369 SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA--YKPQ-- 424
Query: 939 FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
I T+YE L S + + E+++ + + L
Sbjct: 425 --YIK--------AEYEGTVYE--LLS-----KIDSSKLNSNFYKTELLKPLGIIDLYDR 467
Query: 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TG 1057
V LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++
Sbjct: 468 NV-----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE 522
Query: 1058 RTVV 1061
+T +
Sbjct: 523 KTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 3e-13
Identities = 41/186 (22%), Positives = 77/186 (41%), Gaps = 14/186 (7%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYITGNITISGYPKK-- 935
+ + G++ ++G +G GKTT + +LAG+ + + I +
Sbjct: 105 AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNEL 164
Query: 936 QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 995
Q F R+ + + +V + + L +VD + +EV++ +EL +
Sbjct: 165 QNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGK---FEEVVKELELENV 221
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1055
+ LS + +R+ IA L+ F DEP+S LD R V R +R +
Sbjct: 222 LDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN 276
Query: 1056 TGRTVV 1061
G+ V+
Sbjct: 277 EGKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 5e-13
Identities = 64/296 (21%), Positives = 99/296 (33%), Gaps = 84/296 (28%)
Query: 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
K L+ G I+ G + ++GP GKTT + LAG +PT G V ++
Sbjct: 363 LVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWDL-- 417
Query: 219 MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
T AY Q+ E TV E L+ ++L +
Sbjct: 418 --------TVAYKPQYIKAEYEGTVYELLSKIDS-----------SKLNSNFYKTEL--- 455
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
LK LG+ D V D +SGG+ +RV +
Sbjct: 456 ------------------------LKPLGIIDLYDRNVED-----LSGGELQRVAIAATL 486
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA-VISLLQPAPETYDLF----- 392
+ A +DE S LD + +R + N TA V+ +D+
Sbjct: 487 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE--------HDVLMIDYV 538
Query: 393 -DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQE--VTSRKDQRQY 445
D +I+ +G+ G L R+G+ FL +T R+D
Sbjct: 539 SDRLIVF-EGEPGRHGR---ALPPM-------GMREGMNRFLASVGITFRRDPDSG 583
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 9e-09
Identities = 44/231 (19%), Positives = 75/231 (32%), Gaps = 70/231 (30%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL---KVSGTVTYNGHDMDEF 222
+ ++K G + ++GP +GKTT + LAG+L P L S +E
Sbjct: 105 AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNEL 164
Query: 223 VPQRTAAYI--------SQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
Q+ + + + G E+L ++ K
Sbjct: 165 QNYFERLKNGEIRPVVKPQYVDLLPKAV-------------KGKVRELLKKVDEVGKF-- 209
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334
+ +K L L+ V D + +SGG+ +RV
Sbjct: 210 -------------------------EEVVKELELE-----NVLDRELHQLSGGELQRV-- 237
Query: 335 GEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHI-NSGTAVI 379
+ AL F DE S+ LD ++ +R + N G AV+
Sbjct: 238 ---AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIR---RLANEGKAVL 282
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 2e-19
Identities = 63/260 (24%), Positives = 95/260 (36%), Gaps = 55/260 (21%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
TILK +S I G +L G +GKTTLL L T SGTV G +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYS 91
Query: 226 RTAA-----YISQ--HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
++S + V + + S + +G Y+ + + R
Sbjct: 92 AETVRQHIGFVSHSLLEKFQEGERVIDVVI-SGAFKSIG-VYQDIDDEIR---------- 139
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
A + LK++G+ A I +S G+K+RV M
Sbjct: 140 --------NEAHQ----------LLKLVGMSAKAQQY-----IGYLSTGEKQRV-----M 171
Query: 339 VGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFD 393
+ AL L +DE + GLD +++ L A+I + E F
Sbjct: 172 IARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFS 231
Query: 394 DIILLSDGQIVYQGPRELVL 413
I+LL DGQ + QG E +L
Sbjct: 232 KILLLKDGQSIQQGAVEDIL 251
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 2e-18
Identities = 46/218 (21%), Positives = 94/218 (43%), Gaps = 28/218 (12%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNITISGYPKKQETF 939
+L +S G L G++GAGKTTL+++L T +G + + G + +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT----SGTVNLFGKMPGKVGY 90
Query: 940 ------ARISGYCEQNDIH---SPFVTIYESLL--FSAWLRLSPEVDSETRKMFIDEVME 988
I G+ + + + ++ + + ++D E R ++++
Sbjct: 91 SAETVRQHI-GFVSH-SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNE-AHQLLK 147
Query: 989 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048
LV ++ Q +G LST +++R+ IA L+ P ++ +DEP +GLD A ++
Sbjct: 148 LVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLS 202
Query: 1049 TVR--NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+ + ++ H +I F ++ L+K G
Sbjct: 203 ILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKDG 239
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 2e-18
Identities = 59/288 (20%), Positives = 106/288 (36%), Gaps = 74/288 (25%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
LK ++ IK G +T +LG GK+TL G L P+ SG + ++ +D ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDY--SRKG 78
Query: 228 AAYISQH--------DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+ + DN + +V + ++F A + E+ +R A
Sbjct: 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPE-----DEIRKRVDNA------ 127
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
LK G++ D +S GQKKRV
Sbjct: 128 -----------------------LKRTGIEHLKDKPTHC-----LSFGQKKRV------- 152
Query: 340 GPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD 390
A+A L +DE + GLD +I+ L + + G +I
Sbjct: 153 --AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE-MQKELGITIIIATHDIDIVPL 209
Query: 391 LFDDIILLSDGQIVYQGPRELVL---EFFASMGFRCPKRKGVADFLQE 435
D++ ++ +G+++ QG + V E + R P+ + + L+E
Sbjct: 210 YCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILKE 257
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 4e-15
Identities = 48/217 (22%), Positives = 92/217 (42%), Gaps = 36/217 (16%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYP--KKQETF 939
L G++ + G +TA++G +G GK+TL G + + +G I P ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS----SGRILFDNKPIDYSRKGI 79
Query: 940 ARIS---GYCEQNDIHSP---FV--TIYESLLFSAWLRLSPE---VDSETRKMFIDEVME 988
++ G Q+ P ++Y+ + F + + + +D ++
Sbjct: 80 MKLRESIGIVFQD----PDNQLFSASVYQDVSFG------AVNMKLPEDEIRKRVDNALK 129
Query: 989 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1048
+ L+ LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+
Sbjct: 130 RTGIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMK 184
Query: 1049 TVRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+ + G T++ H + D +F+MK G
Sbjct: 185 LLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKEG 220
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 2e-18
Identities = 33/212 (15%), Positives = 71/212 (33%), Gaps = 43/212 (20%)
Query: 893 PGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIT-GNITISGYPKKQETFARISGYCEQND 950
G ++G +G+GKTTL+ ++G G I + + Y
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYI-------RYSTNLP 81
Query: 951 IHSPF-VTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPG----- 1004
VT+ + + L + + D +E+++ + L
Sbjct: 82 EAYEIGVTVNDIVYLY--EEL--------KGLDRDLFLEMLKA-------LKLGEEILRR 124
Query: 1005 -VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1063
+ LS Q + ++ L + P I+ +DEP +DA ++ R ++ + G+ +
Sbjct: 125 KLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILV 181
Query: 1064 IHQPSIDIFEAF---DELFLMKRGGQEIYVGP 1092
H ++ + G +
Sbjct: 182 TH----ELDMLNLYKEYKAYFLVGNRLQGPIS 209
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 47/288 (16%), Positives = 89/288 (30%), Gaps = 83/288 (28%)
Query: 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
K L++++ + G ++LGP SGKTTLL A++G L P SG + NG +
Sbjct: 12 SGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG-LLPY---SGNIFINGME 66
Query: 219 MDEFVPQRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
+ + Y + + + +TV + + +G+ R+
Sbjct: 67 VRKIRNYI--RYSTNLPEAYEIGVTVNDIVYLYEELKGL-----------DRDLF----- 108
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEM 337
E LK L L + + +S GQ V
Sbjct: 109 ---------------LEM-------LKALKL----GEEILRRKLYKLSAGQSVLVR---- 138
Query: 338 MVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYD-- 390
ALA + +DE +D++ I +++ ++ T++
Sbjct: 139 -TSLALASQPEIVGLDEPFENVDAARRHVISRYIKE-YGK---EGILV-------THELD 186
Query: 391 ----LFDDIILLSDGQIVYQG--PREL----VLEFFASMGFRCPKRKG 428
+ G + EL ++E +
Sbjct: 187 MLNLYKEYKAYFLVGNRLQGPISVSELLESSIVEGERNDALLVLDIMD 234
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 3e-18
Identities = 43/181 (23%), Positives = 77/181 (42%), Gaps = 29/181 (16%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L G + G + ++G +G GKTT + +LAG T G I ++T++ K Q
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA--YKPQ----Y 355
Query: 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 1001
I T+YE L S + + E+++ + + L V
Sbjct: 356 IK--------ADYEGTVYE--LLS-----KIDASKLNSNFYKTELLKPLGIIDLYDREV- 399
Query: 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 1060
+ LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T
Sbjct: 400 ----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 455
Query: 1061 V 1061
+
Sbjct: 456 L 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 1e-12
Identities = 40/180 (22%), Positives = 81/180 (45%), Gaps = 22/180 (12%)
Query: 892 RPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYITGNITISGYPKK--QETFARISGY 945
+ G++ ++G +G GK+T + +LAG+ G + + I + Q F ++
Sbjct: 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN- 103
Query: 946 CEQNDIH----SPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 1001
+I +V + + + L + D + ++EV++ +EL + + +
Sbjct: 104 ---GEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGK---LEEVVKALELENVLEREI- 156
Query: 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1061
LS + +R+ IA L+ N + F DEP+S LD R R +R + G++V+
Sbjct: 157 ----QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 1e-10
Identities = 64/292 (21%), Positives = 101/292 (34%), Gaps = 78/292 (26%)
Query: 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
K L+ G IK G + ++GP GKTT + LAG +PT G + ++
Sbjct: 294 VKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWDLTVA 350
Query: 220 DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+ PQ YI E TV E L+ ++L +
Sbjct: 351 --YKPQ----YIKAD----YEGTVYELLSKIDA-----------SKLNSNFYKTEL---- 385
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
LK LG+ D V + +SGG+ +RV ++
Sbjct: 386 -----------------------LKPLGIIDLYDREVNE-----LSGGELQRVAIAATLL 417
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA-VISLLQPAPETYDLFDDIIL- 397
A +DE S LD + +R + N TA V+ D+++
Sbjct: 418 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE------------HDVLMI 465
Query: 398 --LSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQE--VTSRKDQRQY 445
+SD +V++G E A R+G+ FL +T R+D
Sbjct: 466 DYVSDRLMVFEG--EPGKYGRALPPM--GMREGMNRFLASIGITFRRDPDTG 513
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 2e-07
Identities = 57/331 (17%), Positives = 100/331 (30%), Gaps = 99/331 (29%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL---KVSGTVTYNGHDMDEF 222
+ V+K G + ++GP +GK+T + LAG+L P L S +E
Sbjct: 35 AFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNEL 94
Query: 223 VPQRTAAYI--------SQHDNHIGEMT---VRETLAFSARCQGVGTRYEMLTELARREK 271
Q+ + I + V E L + + +L K
Sbjct: 95 QNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL----------KKADETGKLEEVVK 144
Query: 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKR 331
A ++ + + ++ L SGG+ +R
Sbjct: 145 ALELEN--------------------VLEREIQHL------------------SGGELQR 166
Query: 332 VTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------S 380
V + AL F DE S+ LD +R+ G +V+ +
Sbjct: 167 V-----AIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRR--LSEEGKSVLVVEHDLA 219
Query: 381 LLQPAPETYDLFDDIILLSDGQIVY------QGPRELVLEFFAS------MGFRCPKRKG 428
+L L D I ++ VY +G R + EF + FR P
Sbjct: 220 VLD------YLSDIIHVVYGEPGVYGIFSQPKGTRNGINEFLRGYLKDENVRFR-PYEIK 272
Query: 429 VADFLQEVTSRKDQRQYWAHKEKPYRFVTVQ 459
+ V ++ + K Y ++
Sbjct: 273 FTKTGERVEIERETLVTYPRLVKDYGSFRLE 303
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 3e-17
Identities = 43/185 (23%), Positives = 74/185 (40%), Gaps = 26/185 (14%)
Query: 882 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETF 939
L +G + G + ++G +G GKTT +L G G +T I Y K Q F
Sbjct: 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIF 340
Query: 940 ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSL 999
+ T+ + +L + + T F +EV + + L+ L +S
Sbjct: 341 P------------NYDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLESN 382
Query: 1000 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1059
V + LS + ++L IA L + +D+P+S LD IV + ++ +
Sbjct: 383 V-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKA 437
Query: 1060 VVCTI 1064
V I
Sbjct: 438 VTFII 442
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 8e-12
Identities = 39/185 (21%), Positives = 67/185 (36%), Gaps = 23/185 (12%)
Query: 892 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGY------ 945
+ + ++G +G GKTT++ +LAG + N K E R G
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSK----VGKDEVLKRFRGKEIYNYF 78
Query: 946 -----CEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 1000
E +H Y S + + + DEV EL+ + L
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEI--LTKIDERGKKDEVKELLNMTNLWN--- 133
Query: 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1060
+ LS +RL +A L+ + D+P+S LD R + + +R + + V
Sbjct: 134 --KDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYV 190
Query: 1061 VCTIH 1065
+ H
Sbjct: 191 IVVDH 195
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 1e-10
Identities = 54/298 (18%), Positives = 92/298 (30%), Gaps = 88/298 (29%)
Query: 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
KK L +G K G + +LGP GKTT L G++ G+VT +
Sbjct: 276 IKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQIL 332
Query: 220 DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+Y Q I P+
Sbjct: 333 ---------SYKPQR----------------------------------------IFPNY 343
Query: 280 DIDVYM---KAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE 336
D V A ++ + K L L ++ V D +SGG+ +++
Sbjct: 344 DGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVND-----LSGGELQKLYIAA 398
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTA-VISLLQPAPETYDLF--- 392
+ A +D+ S+ LD + + +++ +I +DL
Sbjct: 399 TLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID--------HDLSIHD 450
Query: 393 ---DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQE--VTSRKDQRQY 445
D II+ G+ G + + G+ +FL+E VT R+D
Sbjct: 451 YIADRIIVF-KGEPEKAGLATSPVTL----------KTGMNEFLRELEVTFRRDAETG 497
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 4e-10
Identities = 49/338 (14%), Positives = 100/338 (29%), Gaps = 95/338 (28%)
Query: 168 LKDVS-GVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTL-KVSGTVTYN-------GHD 218
K K + +LG GKTT+L LAG++ P + V + G +
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE 73
Query: 219 M-----DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAA 273
+ + + + + Q+ + + GT E+LT++ R K
Sbjct: 74 IYNYFKELYSNELKIVHKIQYVEYASK------FLK-------GTVNEILTKIDERGKKD 120
Query: 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVT 333
+K ++ + + +L SGG +R+
Sbjct: 121 EVKELLNM--------------TNLWNKDANIL------------------SGGGLQRL- 147
Query: 334 TGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI------SLL 382
+V +L D+ S+ LD + +R+ + VI +L
Sbjct: 148 ----LVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRE---LLKNKYVIVVDHDLIVL 200
Query: 383 QPAPETYDLFDDIILLSDGQIVY----------QGPRELVLEFFASMGFRCPKRKGVADF 432
L D I ++ VY G + + + + + +
Sbjct: 201 D------YLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYLPAENMKIRPDE-IKFM 253
Query: 433 LQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHV 470
L+EV+ + + + +F +
Sbjct: 254 LKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEA 291
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 1e-16
Identities = 54/241 (22%), Positives = 96/241 (39%), Gaps = 39/241 (16%)
Query: 855 SLTFDEV--VYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 912
+ V ++ P E K L VS G + G +G+GK+TL+
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKA----------LENVSLVINEGECLLVAGNTGSGKSTLLQ 51
Query: 913 VLAG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF-VTIYESLLFSAWLR 969
++AG T +G++ G KK R G Q F +++ + F+
Sbjct: 52 IVAGLIEPT----SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFA---- 103
Query: 970 LSPE---VDSETRKMFIDEVMELVELNP---LRQSLVGLPGVSGLSTEQRKRLTIAVELV 1023
+ D + + + + ME V L+ + P LS +++R+ IA +V
Sbjct: 104 --VKNFYPDRDPVPL-VKKAMEFVGLDFDSFKDRV----P--FFLSGGEKRRVAIASVIV 154
Query: 1024 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083
P I+ +DEP GLD ++R V G+TV+ H + D + ++++
Sbjct: 155 HEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK 213
Query: 1084 G 1084
G
Sbjct: 214 G 214
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 2e-15
Identities = 56/260 (21%), Positives = 95/260 (36%), Gaps = 73/260 (28%)
Query: 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRT 227
L++VS VI G L+ G SGK+TLL +AG ++PT SG V Y+G + +R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRN 79
Query: 228 AAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
Q+ ++ V + +AF+ + + K A
Sbjct: 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPD------RDPVPLVKKA------------- 120
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG-----ISGGQKKRVTTGEMMVGP 341
++ +GLD + + +SGG+K+RV
Sbjct: 121 ----------------MEFVGLDF--------DSFKDRVPFFLSGGEKRRV--------- 147
Query: 342 ALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392
A+A L +DE GLD ++ + + G VI + +
Sbjct: 148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEK-WK-TLGKTVILISHDIETVINHV 205
Query: 393 DDIILLSDGQIVYQG-PREL 411
D +++L G+ V+ G E
Sbjct: 206 DRVVVLEKGKKVFDGTRMEF 225
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 79.1 bits (194), Expect = 6e-15
Identities = 105/737 (14%), Positives = 211/737 (28%), Gaps = 212/737 (28%)
Query: 121 YEHLNVEAEAFLASNA------LPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGV 174
+ H++ E +F+ + +D+ + + I SK+ I+ V
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFD--CKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 175 IKPGRL-TLLLGPPSSGKTTLLLALAGKLDPT---LKVSGTVTYNGHDMDEFVPQRTAAY 230
RL LL S + + + L L M T Y
Sbjct: 62 SGTLRLFWTLL---SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM------TRMY 112
Query: 231 ISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVY-MKAIA 289
I Q D + V F+ V +R + +L R+ ++P ++ + +
Sbjct: 113 IEQRDRLYNDNQV-----FAKY--NV-SRLQPYLKL--RQALLELRPAKNVLIDGVLGS- 161
Query: 290 TEGQEANVITDYYLK-VLGLDVCADTMVGDEMIRGI---SGGQKKRVTTGEMMVGPALAL 345
G K + LDVC V +M I + E ++ L
Sbjct: 162 --G-----------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP---ETVLEMLQKL 205
Query: 346 FMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLL---QPAPETYDLFDDIILLSDGQ 402
+D + T + + + I+S A + L +P + ++ + +
Sbjct: 206 LYQ-----IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV---QNAK 257
Query: 403 IVYQGPRELVLEFFASMGFRCP-----KRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVT 457
+ C + K V DFL T H T
Sbjct: 258 AW------------NAFNLSCKILLTTRFKQVTDFLSAAT-TTHISL--DHHSMTL---T 299
Query: 458 VQEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMK 517
E + + + D P + ++ L+ + E ++ ++
Sbjct: 300 PDEVKSLLLKY-LDCRPQDL---PREVLTTNPRRLSI----IA--ESIRDGLAT------ 343
Query: 518 RNSFVYIF--KLIQI--AFVAVVYMTLFLRTKMHKDTVTDGGIFAGATFFAITMVNFNGF 573
+++ ++ KL I + + V L ++
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNV------LEPAEYRK------------------------ 373
Query: 574 SEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNA 633
+ FPP A IP L + +W + V N
Sbjct: 374 ------------MFD--RLSVFPPSA--------HIPTILLSL-IWFDVIKSDVMVVVN- 409
Query: 634 GRFFKQYALLLGVNQMAS----ALFRFIAVTGRNMVV--ANTFGSFALLVLLSLGGFILS 687
+Y+L+ + ++ +++ + V N + + + I
Sbjct: 410 --KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 688 REDIKKWWKWAYWCSPLTY----AQNAIVANEF----LGHSW--KKFTQDSSETLG---- 733
D Y+ S + + ++ F L + +K DS+
Sbjct: 468 YLD-------QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520
Query: 734 ---VQVLKS-RGFFA-HEYWYWLGLGALFGFVL-----LLNFAYT----LALTFLDPFEK 779
+Q LK + + ++ Y + A+ F+ L+ YT +AL
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA------ 574
Query: 780 PRAVITEEIESNEQDDR 796
I E E+++Q R
Sbjct: 575 EDEAIFE--EAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.5 bits (182), Expect = 2e-13
Identities = 93/600 (15%), Positives = 170/600 (28%), Gaps = 195/600 (32%)
Query: 58 KGILTTSRGEANEVD-VYNLGLQERQ--RLIDKLVKVTDVDNERFL---LK-----LKNR 106
K IL+ E+D + RL L+ + ++F+ L+ L +
Sbjct: 43 KSILSKE-----EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97
Query: 107 IDRVGIDLPKVEVRY-EHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHL 165
I + Y E + N F K+ + + L LR + L
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDR------LYNDNQVFAKYNVSRLQPYLK-LR------QAL 144
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTL------------------------------- 194
L+ V+ + G SGKT +
Sbjct: 145 LELRPAKNVL-------IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 195 ----LLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQH---------DNHIGEM 241
L L ++DP + N + + N
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN----- 252
Query: 242 TVR--ETL-AFSARCQG-VGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANV 297
V+ + AF+ C+ + TR++ +T+ I D T + ++
Sbjct: 253 -VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL-----TPDEVKSL 306
Query: 298 ITDYYLKVLGLDVCADTMVGD---EMIRGISGGQKKRVTTGEMMVGP-ALALFMDEISTG 353
+ LK L D E++ P L++ + I G
Sbjct: 307 L----LKYLDCR------PQDLPREVLTT----------------NPRRLSIIAESIRDG 340
Query: 354 LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD------------- 400
L + ++ VNC + I S +++L+PA E +FD + +
Sbjct: 341 LATWDNWKHVNCDKLTTIIESS---LNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 401 GQIVYQGPRELVLEFFA-SMGFRCPKRK--GVADFLQEVTSRKDQR-------------- 443
++ +V + S+ + PK + E+ + +
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 444 --------------QYWA-----HKEKPYRFVTVQEFAEAFQSFH-VGQKISDELRTPFD 483
QY+ H + + F F F + QKI + T ++
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD-STAWN 515
Query: 484 KSKSHRAALTT-ETYGVGKRELLKANISRELL-------LMKRNSFVYIFK---LIQIAF 532
S S L + Y K + + E L L K + K L++IA
Sbjct: 516 ASGSILNTLQQLKFY---KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.3 bits (179), Expect = 3e-13
Identities = 69/468 (14%), Positives = 129/468 (27%), Gaps = 144/468 (30%)
Query: 773 FLDPFEK----------PRAVIT-EEIES-NEQDDRIGGNVQLSTLGGSSNHNTRSGSTD 820
F D F P+++++ EEI+ D + G ++L S +
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 821 DIRGQ-----------QSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPE 869
++ + S+ R + F Y+V +
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK---------YNVSRLQ 135
Query: 870 EMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTL-MDVLAGRKTGGYITGNI- 927
L L+ L RP + GV G+GKT + +DV K + I
Sbjct: 136 PYLK---LRQALLEL-------RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 928 --TISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDE 985
+ C + T+ E L ++ P S + +
Sbjct: 186 WLNL--------------KNCNSPE------TVLEMLQ-KLLYQIDPNWTSRSDHSSNIK 224
Query: 986 VMELVELNPLRQSLVGLPGVSGLSTEQRKR-LTIAVEL--VANPSIIFMDEPTSGLDARA 1042
+ ++ ++ L L L ++ + L + L V N + +
Sbjct: 225 ----LRIHSIQAELRRL-----LKSKPYENCLLV---LLNVQNAKAW------NAFNLSC 266
Query: 1043 AAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDE-----LFL----MKRGG---QEIY 1089
++ T R V + T H L L + + +
Sbjct: 267 KILL--TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 1090 VGPLGRHSCHLISYFEAIPGVQKIKDGYNPATWMLEVSAASQELALGIDFTEHYKRSDLY 1149
P +S I+DG ATW D +H L
Sbjct: 325 TNPR------RLSIIAE-----SIRDG--LATW---------------DNWKHVNCDKLT 356
Query: 1150 RRNKALIEDLSRPPPGSKDLY-----FPTQFSQSSWI--QFVACLWKQ 1190
++ + L P + ++ FP S+ I ++ +W
Sbjct: 357 TIIESSLNVLE--PAEYRKMFDRLSVFP----PSAHIPTILLSLIWFD 398
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.6 bits (177), Expect = 6e-13
Identities = 100/669 (14%), Positives = 196/669 (29%), Gaps = 212/669 (31%)
Query: 401 GQIVYQGPRELVLEFFASM--GFRCPKRKGVADFLQEVTSRKD--------------QRQ 444
G+ YQ ++++ F + F C K V D + + S+++ R
Sbjct: 12 GEHQYQY-KDILSVFEDAFVDNFDC---KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 445 YWAHKEKPYRFVTVQEFAEAFQSFHVG---QKISDELRTPFDKSKSHRAALTTETYGVGK 501
+W K VQ+F E + I E R P ++ T Y + +
Sbjct: 68 FWTLLSKQEE--MVQKFVEEVLRINYKFLMSPIKTEQRQP---------SMMTRMY-IEQ 115
Query: 502 RELL--------KANISRELLLMK-RNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVT 552
R+ L K N+SR +K R + + +L V + +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQA---LLELRPAKNVLIDGV-------------- 158
Query: 553 DGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWA----YAIPSWILK 608
G +G T+ A+ + + DF+ F W P +L+
Sbjct: 159 -LG--SGKTWVALDVCLSYKVQ-------------CKMDFKIF--WLNLKNCNSPETVLE 200
Query: 609 IPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVAN 668
+ Y + + + R + L ++ + + L R + ++ N
Sbjct: 201 MLQKL----------LYQIDPNWTS-RSDHSSNIKLRIHSIQAELRRLL----KSKPYEN 245
Query: 669 TFGSFALLVLLSLGGFILSREDIKKWWKWAYW---CSPLTYAQNAIVAN---------EF 716
LLVL +++ W + C L + V +
Sbjct: 246 -----CLLVL----------LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 717 LGHSWKKFTQDSSETLGVQVLKS------------------------RGFFAH-EYWYWL 751
L H T D ++L ++ L R A + W +
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 752 GLGALFGFVLLLNFAYTLALTFLDP------------FEK----PRAVIT---EEIESNE 792
L +L L+P F P +++ ++ ++
Sbjct: 351 NCDKL-------TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 793 QDDRIGGNVQLSTLGGSSNHNTRS--GSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLP 850
+ + S + +T S +++ + + +L + + K
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT----- 458
Query: 851 FEPHSLT---FDEVVYS--------VDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTA- 898
F+ L D+ YS ++ PE M ++V L+ FR L
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT-----LFRMVFLD-----FR--FLEQK 506
Query: 899 --LMGVSGAGKTTLMDVLAG-RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF 955
+ ++++ L + YI N Y + E+N I S +
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK--YERLVNAILDFLPKIEENLICSKY 564
Query: 956 VTIYESLLF 964
+ L
Sbjct: 565 TDLLRIALM 573
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.7 bits (167), Expect = 9e-12
Identities = 95/603 (15%), Positives = 166/603 (27%), Gaps = 208/603 (34%)
Query: 39 EEALKWAALEKLPTYNRLRKGILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNER 98
EE L+ Y L I T R + +Y ++R RL + DN+
Sbjct: 84 EEVLR-------INYKFLMSPIKTEQRQPSMMTRMYI---EQRDRLYN--------DNQV 125
Query: 99 FLLKLKNRIDRVGIDLPKVEVRYEHL-NVEAEAF-------------LASNALPSF---I 141
F K + R L + L + +A + S+
Sbjct: 126 FA---KYNVSR----LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 142 KFYTNIF----------EDILN-----YLRIIP---SKKRHLTILKDVSGVIKPGRLTLL 183
K IF E +L +I P S+ H + +K I+ LL
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 184 LGPPSSGKTTLLLALAGKLD---------------PTLKVSGTVTYNGHDMDEFVPQRTA 228
P + LL+ L L +T + +F+ T
Sbjct: 239 KSKP--YENCLLV-----LLNVQNAKAWNAFNLSCKIL-----LTTRFKQVTDFLSAATT 286
Query: 229 AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAI 288
+IS + + +T E + + + R + L + P + I
Sbjct: 287 THISLDHHSMT-LTPDEVKSLLLKY--LDCRPQDL-----PREVLTTNP-----RRLSII 333
Query: 289 ATEGQEANVITDYYLKVLG------LDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
A ++ D + V ++ + + E +K
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY--------RKMFD--------R 377
Query: 343 LALFMDE--ISTGL--------DSSTTFQIVNCLRQNIHINSGTAVISLL--QPAPETY- 389
L++F I T L S +VN L + SL+ QP T
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY----------SLVEKQPKESTIS 427
Query: 390 --DLFDDIILLSDG------QIV--YQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSR 439
++ ++ + + IV Y P+ F +
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKT---------------------FDSDDLIP 466
Query: 440 KDQRQYWA-----HKEKPYRFVTVQEFAEAFQSFH-VGQKISDELRTPFDKSKSHRAALT 493
QY+ H + + F F F + QKI + T ++ S S L
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD-STAWNASGSILNTLQ 525
Query: 494 T-ETYG------VGKRELL-----------KANISR-------ELLLMKRNSFVYIFKLI 528
+ Y K E L + N+ + LM + ++
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
Query: 529 QIA 531
Q+
Sbjct: 586 QVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 8e-09
Identities = 71/358 (19%), Positives = 111/358 (31%), Gaps = 115/358 (32%)
Query: 21 WNTNSIGAFSRSSREEDDEEALKWAALEKLPTYNRLRKGILTTSRGEANEVDVYNLGLQE 80
N + AF+ S + IL T+R D +
Sbjct: 254 QNAKAWNAFNLSCK-------------------------ILLTTR-FKQVTDFLSAATTT 287
Query: 81 RQRLIDKLVKVTDVDNERFLLK-LKNRIDRVGIDLPKVEV-------------------- 119
L + +T + + LLK L R DLP+ EV
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQ----DLPR-EVLTTNPRRLSIIAESIRDGLA 342
Query: 120 ---RYEHLNVEA-----EAFLASNALPS--FIKFYTN--IFEDILNYLRIIPSKKRHLTI 167
++H+N + E+ L N L + K + +F + IP+ L++
Sbjct: 343 TWDNWKHVNCDKLTTIIESSL--NVLEPAEYRKMFDRLSVFPPSAH----IPTIL--LSL 394
Query: 168 L------KDVSGVI-KPGRLTLLLGPPSSGKTT---LLLALAGKLD--PTLKVSGTVTYN 215
+ DV V+ K + +L+ P + + L L KL+ L S YN
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 216 ---GHDMDEFVPQRTAAYISQHDNHIG------EMTVRET--------LAF--------S 250
D D+ +P Y +HIG E R T F S
Sbjct: 455 IPKTFDSDDLIPPYLDQYFY---SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511
Query: 251 ARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIAT--EGQEANVITDYYLKVL 306
G+ L +L + K DP + + AI E N+I Y +L
Sbjct: 512 TAWNASGSILNTLQQL-KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 69.8 bits (172), Expect = 4e-13
Identities = 47/203 (23%), Positives = 80/203 (39%), Gaps = 37/203 (18%)
Query: 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQ- 936
L+GVS + G +T ++G +G+GK+TL++V+ G + G + N I+ +
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
Query: 937 ------ETFARISGYCEQNDIH------------SPFVTIYESLLFSAWLRLSPEVDSET 978
TF Q + ES L S + + + E
Sbjct: 80 YHYGIVRTF--------QT-PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM 130
Query: 979 RKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1038
+ +++E ++L+ L G LS Q K + I L+ NP +I MDEP +G+
Sbjct: 131 VEK-AFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
Query: 1039 DARAAAIVMRTVRNTVDTGRTVV 1061
A + V G T +
Sbjct: 185 APGLAHDIFNHVLELKAKGITFL 207
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 5e-12
Identities = 52/212 (24%), Positives = 76/212 (35%), Gaps = 41/212 (19%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
L VS + G +TL++GP SGK+TL+ + G L G V + D+ P
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEP 76
Query: 225 QRTAAY-IS---QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
Y I Q + EMTV E L C G + + ++
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE------- 129
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE---- 336
M A + L+ L L D G+ +SGGQ K V E
Sbjct: 130 ----MVEKAFK----------ILEFLKLSHLYDRKAGE-----LSGGQMKLV---EIGRA 167
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQ 368
+M P + + MDE G+ I N + +
Sbjct: 168 LMTNPKM-IVMDEPIAGVAPGLAHDIFNHVLE 198
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 6e-13
Identities = 44/202 (21%), Positives = 79/202 (39%), Gaps = 35/202 (17%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YITGNITISGYPKKQETFA 940
L G+S + + G +++G SG+GK+TL+ +L T G + +K+ +
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLL 79
Query: 941 RISGYCEQNDIHSPFVTIYESLL--FSAW------LRLSPEVDSETRKMFIDEVMELVEL 992
R N FV + L+ +A + + E ++ L+
Sbjct: 80 R-------NR-KLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKER----GEYLLSE 127
Query: 993 NPLRQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
+GL LS +++R+ IA L P ++F DEPT LD+ VM
Sbjct: 128 -------LGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVM 180
Query: 1048 RTVRNTVDTGRTVVCTIHQPSI 1069
+ G ++V H+ +
Sbjct: 181 DIFLKINEGGTSIVMVTHEREL 202
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 9e-07
Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 58/252 (23%)
Query: 163 RHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-PTLKVSGTVTYNGHDMDE 221
R ILK +S +K G ++G SGK+TLL L G LD PT G V G ++D
Sbjct: 15 RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPT---EGKVFLEGKEVDY 70
Query: 222 FVPQRTAA-------YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
+ + ++ Q I E+T E + G + +E+
Sbjct: 71 TNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKK-------EAKERG-- 121
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334
+ L LGL D + +SGG+++RV
Sbjct: 122 ------------------EYL-------LSELGL---GDKL--SRKPYELSGGEQQRVAI 151
Query: 335 GEMMV-GPALALFMDEISTG-LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392
+ P L LF DE TG LDS+ T ++++ + I+ GT+++ ++ E +L
Sbjct: 152 ARALANEPIL-LFADE-PTGNLDSANTKRVMDIFLK-IN-EGGTSIV-MVTHERELAELT 206
Query: 393 DDIILLSDGQIV 404
+ + DG++V
Sbjct: 207 HRTLEMKDGKVV 218
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 7e-13
Identities = 53/201 (26%), Positives = 95/201 (47%), Gaps = 16/201 (7%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YITGNITISGYPK 934
E+ + L V+ + G ++MG SG+GK+T+++++ + T G NI +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 935 KQETFAR---ISGYCEQ--NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL 989
+ T R I G+ Q N I P +T E++ + + E R+ E +++
Sbjct: 75 DELTKIRRDKI-GFVFQQFNLI--PLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 990 VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1049
EL + P + LS Q++R+ IA L NP II D+PT LD++ +M+
Sbjct: 132 AELEERFANH--KP--NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQL 187
Query: 1050 VRN-TVDTGRTVVCTIHQPSI 1069
++ + G+TVV H ++
Sbjct: 188 LKKLNEEDGKTVVVVTHDINV 208
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 8e-07
Identities = 53/253 (20%), Positives = 96/253 (37%), Gaps = 59/253 (23%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD-PTLKVSGTVTYNGHDMDEFV 223
+ LK+V+ IK G ++GP SGK+T +L + G LD PT G V + ++
Sbjct: 18 IYALKNVNLNIKEGEFVSIMGPSGSGKST-MLNIIGCLDKPT---EGEVYIDNIKTNDLD 73
Query: 224 PQRTAAY-------ISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
+ Q N I +T E + ++ ++ E+
Sbjct: 74 DDELTKIRRDKIGFVFQQFNLIPLLTALENVELPL-------IFKYRGAMSGEER----- 121
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVG---DEMIRGISGGQKKRVT 333
+ A E LK+ L + +++ SGGQ++RV
Sbjct: 122 ---------RKRALE----------CLKMAEL---EERFANHKPNQL----SGGQQQRVA 155
Query: 334 TGEMMV-GPALALFMDEISTG-LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391
+ P + + D+ T LDS T +I+ L++ ++ G V+ ++
Sbjct: 156 IARALANNPPI-ILADQ-PTWALDSKTGEKIMQLLKK-LNEEDGKTVV-VVTHDINVARF 211
Query: 392 FDDIILLSDGQIV 404
+ II L DG++
Sbjct: 212 GERIIYLKDGEVE 224
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 6e-11
Identities = 63/281 (22%), Positives = 102/281 (36%), Gaps = 94/281 (33%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKV-SGTVTYNGHDMDEFVP- 224
IL+ +S + PG + ++GP SGK+TL LAG+ +V GTV + G D+ P
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR--EDYEVTGGTVEFKGKDLLALSPE 92
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQ------GVGTRYEMLTELARREKAAGIKPD 278
R I +AF Q GV ++ + T L G +
Sbjct: 93 DRAGEGI--------------FMAF----QYPVEIPGVSNQFFLQTALNAVRSYRGQETL 134
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR-----GISGGQKKRVT 333
D + +L + ++++ G SGG+KKR
Sbjct: 135 DRFDFQDLMEEK------------IALLKMP--------EDLLTRSVNVGFSGGEKKR-- 172
Query: 334 TGE----MMVGPALALFMDEISTGLDSSTTFQI---------VNCLRQNIHINSGTAVIS 380
+ ++ P L + +DE +GLD I VN LR +++
Sbjct: 173 -NDILQMAVLEPELCI-LDESDSGLD------IDALKVVADGVNSLRDG---KRSFIIVT 221
Query: 381 ----LL---QPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
+L +P D + +L G+IV G LV +
Sbjct: 222 HYQRILDYIKP--------DYVHVLYQGRIVKSGDFTLVKQ 254
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 54/205 (26%), Positives = 82/205 (40%), Gaps = 68/205 (33%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GNITISG---- 931
EDK +L G+S PG + A+MG +G+GK+TL LAGR+ Y +T G + G
Sbjct: 31 EDKAIL-RGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE--DYEVTGGTVEFKGKDLL 87
Query: 932 -----------------YPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS--- 971
YP E I G V+ F L+ +
Sbjct: 88 ALSPEDRAGEGIFMAFQYP--VE----IPG-----------VSNQF---F---LQTALNA 124
Query: 972 -------PEVDSETRKMFIDEVMELVELNP--LRQSL-VGLPGVSGLSTEQRKRLTIAVE 1021
+D + ++E + L+++ L +S+ VG G G ++KR I
Sbjct: 125 VRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSG--G----EKKRNDILQM 178
Query: 1022 LVANPSIIFMDEPTSGLDARAAAIV 1046
V P + +DE SGLD A +V
Sbjct: 179 AVLEPELCILDESDSGLDIDALKVV 203
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 3e-10
Identities = 68/279 (24%), Positives = 107/279 (38%), Gaps = 94/279 (33%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKV-SGTVTYNGHDMDEFVP- 224
ILK V+ V+ G + L+GP +GK+TL LAG P V G + +G ++ E P
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD--PEYTVERGEILLDGENILELSPD 75
Query: 225 QRTAAYISQHDNHIGEMTVRETLAFSARCQ------GVGTRYEMLTEL-ARREKAAGIKP 277
+R + LAF Q GV + L A+ +
Sbjct: 76 ERARKGL--------------FLAF----QYPVEVPGVTIANFLRLALQAKLGR------ 111
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR-----GISGGQKKRV 332
+ + + + L++L D + + G SGG+KKR
Sbjct: 112 EVGVAEFWTKVKKA-----------LELLDWD--------ESYLSRYLNEGFSGGEKKRN 152
Query: 333 TTGEM-MVGPALALFMDEISTGLDSSTTFQI---------VNCLRQNIHINSGTAVIS-- 380
++ ++ P A+ +DE +GLD I VN +R N G VI+
Sbjct: 153 EILQLLVLEPTYAV-LDETDSGLD------IDALKVVARGVNAMRGP---NFGALVITHY 202
Query: 381 --LL---QPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
+L QP D + ++ DG++V G EL LE
Sbjct: 203 QRILNYIQP--------DKVHVMMDGRVVATGGPELALE 233
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 55/193 (28%), Positives = 77/193 (39%), Gaps = 51/193 (26%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GNITISG---------- 931
L GV+ G + ALMG +GAGK+TL +LAG Y + G I + G
Sbjct: 19 LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP--EYTVERGEILLDGENILELSPDE 76
Query: 932 -----------YPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRK 980
YP E + G VTI L + +L EV
Sbjct: 77 RARKGLFLAFQYP--VE----VPG-----------VTIANFLRLALQAKLGREVGVAEFW 119
Query: 981 MFIDEVMELVELNP--LRQSL-VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1037
+ + +EL++ + L + L G G G ++KR I LV P+ +DE SG
Sbjct: 120 TKVKKALELLDWDESYLSRYLNEGFSG--G----EKKRNEILQLLVLEPTYAVLDETDSG 173
Query: 1038 LDARAAAIVMRTV 1050
LD A +V R V
Sbjct: 174 LDIDALKVVARGV 186
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 5e-10
Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 28/163 (17%)
Query: 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARI 942
LLN + + G +G GK+TLM +A + G+P ++E R
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD----------GFPTQEE--CRT 497
Query: 943 SGYCEQN-DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 1001
Y E + D ++ + + E T++ I + + ++
Sbjct: 498 -VYVEHDIDGTHSDTSVLDFVF---------ESGVGTKEA-IKDKLIEFGFTDEMIAMP- 545
Query: 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
+S LS + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 546 ---ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 5e-05
Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 16/132 (12%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
+ D++ ++GP +GK+TL+ L G+L PT SG V + +
Sbjct: 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTHEN--------C 736
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
AYI QH E + +T + + + R++ + ++A + D + K
Sbjct: 737 RIAYIKQHAFAHIESHLDKTPS-----EYIQWRFQTGEDRETMDRANRQINENDAEAMNK 791
Query: 287 AIATEGQEANVI 298
EG +
Sbjct: 792 IFKIEGTPRRIA 803
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 8e-04
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 1005 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
+ GLS Q+ +L +A P +I +DEPT+ LD
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 5e-10
Identities = 52/213 (24%), Positives = 88/213 (41%), Gaps = 54/213 (25%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITIS 930
D V+L+ ++ + + G + ++G SG+GK+TL G+ + I
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ---------VLID 69
Query: 931 GYPKKQETFA---RISGYCEQNDIHSPFVTIYESLLFSAWLRL-----SPEVDSETRKMF 982
G+ R G Q +++L + + +P + E
Sbjct: 70 GHDLALADPNWLRRQVGVVLQ-----------DNVLLNRSIIDNISLANPGMSVE----- 113
Query: 983 IDEVMELVEL-------NPLRQ---SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1032
+V+ +L + LR+ ++VG G LS QR+R+ IA LV NP I+ D
Sbjct: 114 --KVIYAAKLAGAHDFISELREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFD 170
Query: 1033 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1065
E TS LD + ++MR + GRTV+ H
Sbjct: 171 EATSALDYESEHVIMRNMHKIC-KGRTVIIIAH 202
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 1e-05
Identities = 56/267 (20%), Positives = 100/267 (37%), Gaps = 89/267 (33%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
IL +++ IK G + ++G SGK+TL + P +G V +GHD+ P
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPN 79
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
R + Q DN + ++ + ++ + P ++
Sbjct: 80 WLRRQVGVVLQ-DNVLLNRSIIDNISLA-------------------------NPGMSVE 113
Query: 283 VYMKAIATEGQEANV---ITD----YYLKVLGLDVCADTMVGDEMIRGI--SGGQKKRVT 333
+ A + A I++ Y +T+VG+ +G SGGQ++R+
Sbjct: 114 KVIYAA----KLAGAHDFISELREGY-----------NTIVGE---QGAGLSGGQRQRI- 154
Query: 334 TGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----S 380
A+A L DE ++ LD + I+ + I +I S
Sbjct: 155 --------AIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKICKGRTVIIIAHRLS 205
Query: 381 LLQPAPETYDLFDDIILLSDGQIVYQG 407
++ A D II++ G+IV QG
Sbjct: 206 TVKNA-------DRIIVMEKGKIVEQG 225
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 5e-10
Identities = 58/227 (25%), Positives = 91/227 (40%), Gaps = 58/227 (25%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKK- 935
L G++ + G AL+G SG GK+T + D L G ++I G +
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGM---------VSIDGQDIRT 456
Query: 936 --------------QET--FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR 979
QE FA TI E++ + E++ +
Sbjct: 457 INVRYLREIIGVVSQEPVLFAT---------------TIAENIRYGREDVTMDEIEKAVK 501
Query: 980 KMFIDE-VMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1037
+ + +M+L P + +LVG G LS Q++R+ IA LV NP I+ +DE TS
Sbjct: 502 EANAYDFIMKL----PHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSA 556
Query: 1038 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
LD + A+V + GRT + H+ S + A D + G
Sbjct: 557 LDTESEAVVQAALDK-AREGRTTIVIAHRLST-VRNA-DVIAGFDGG 600
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 2e-07
Identities = 57/220 (25%), Positives = 92/220 (41%), Gaps = 42/220 (19%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 936
L G+S + G AL+G SG GK+T++ D +AG + + G KQ
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS---------VFLDGKEIKQ 1099
Query: 937 ETFARISGYCEQNDIHS--PFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVE 991
+ Q I S P + +I E++ + R+ + I +
Sbjct: 1100 ---LNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEE-------IVRAAKEAN 1149
Query: 992 LNPLRQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044
++ SL VG G LS Q++R+ IA LV P I+ +DE TS LD +
Sbjct: 1150 IHQFIDSLPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEK 1208
Query: 1045 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+V + + GRT + H+ S I A D + +++ G
Sbjct: 1209 VVQEAL-DKAREGRTCIVIAHRLST-IQNA-DLIVVIQNG 1245
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 8e-10
Identities = 59/219 (26%), Positives = 95/219 (43%), Gaps = 40/219 (18%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 936
L VS PG AL+G SGAGK+T++ D+ +G I I G Q
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGC---------IRIDGQDISQ 120
Query: 937 ETFA---RISGYCEQ-----NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDE-VM 987
T A G Q ND TI +++ + + EV++ + I + +M
Sbjct: 121 VTQASLRSHIGVVPQDTVLFND------TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIM 174
Query: 988 ELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046
P ++ VG G+ LS +++R+ IA ++ P II +DE TS LD +
Sbjct: 175 AF----PEGYRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAI 229
Query: 1047 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085
++ V RT + H+ S + A D++ ++K G
Sbjct: 230 QASL-AKVCANRTTIVVAHRLST-VVNA-DQILVIKDGC 265
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 9e-10
Identities = 58/242 (23%), Positives = 104/242 (42%), Gaps = 39/242 (16%)
Query: 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 914
++ F +V +S + L ++ G AL+G +G+GK+T+ +L
Sbjct: 17 NIEFSDVNFSYPKQTNHRT----------LKSINFFIPSGTTCALVGHTGSGKSTIAKLL 66
Query: 915 AGRKTGGY-ITGNITISGYPKKQETFA---RISGYCEQ-----NDIHSPFVTIYESLLFS 965
R Y G+I I G + I G Q N+ TI ++L+
Sbjct: 67 Y-RF---YDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNE------TIKYNILYG 116
Query: 966 AWLRLSPEVDSETRKMFIDE-VMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELV 1023
EV T+ + + + L P + ++VG G+ LS +R+R+ IA L+
Sbjct: 117 KLDATDEEVIKATKSAQLYDFIEAL----PKKWDTIVGNKGMK-LSGGERQRIAIARCLL 171
Query: 1024 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083
+P I+ DE TS LD++ + + V + + RT++ H+ S I A + + L+ +
Sbjct: 172 KDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKNRTLIIIAHRLST-ISSA-ESIILLNK 228
Query: 1084 GG 1085
G
Sbjct: 229 GK 230
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 5e-04
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 19/102 (18%)
Query: 313 DTMVGDEMIRGI--SGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLRQN 369
DT+VG+ +G+ SGG+++R+ ++ P + + DE ++ LDS T + + +
Sbjct: 146 DTIVGN---KGMKLSGGERQRIAIARCLLKDPKI-VIFDEATSSLDSKTEYLFQKAVE-D 200
Query: 370 IHINSGTAVI----SLLQPAPETYDLFDDIILLSDGQIVYQG 407
+ N +I S + A + IILL+ G+IV +G
Sbjct: 201 LRKNRTLIIIAHRLSTISSA-------ESIILLNKGKIVEKG 235
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 65/308 (21%), Positives = 102/308 (33%), Gaps = 120/308 (38%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
L ++ I G L ++G GK++LL AL ++D KV G V G
Sbjct: 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG---------- 66
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
+ AY+ Q I ++RE + F G + E
Sbjct: 67 SVAYVPQQ-AWIQNDSLRENILF-------GCQLE------------------------- 93
Query: 287 AIATEGQEANVITDYYLKVLGLDVCA------------DTMVGDEMIRGI--SGGQKKRV 332
YY V + CA T +G+ +G+ SGGQK+RV
Sbjct: 94 ------------EPYYRSV--IQACALLPDLEILPSGDRTEIGE---KGVNLSGGQKQRV 136
Query: 333 TTGEMMVGPALA----------LFMDEISTGLDSSTTFQIV-NCLRQNIHINSGTAV--- 378
+LA LF D +S +D+ I N + + + T +
Sbjct: 137 ---------SLARAVYSNADIYLFDDPLS-AVDAHVGKHIFENVIGPKGMLKNKTRILVT 186
Query: 379 --ISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436
+S L D II++S G+I G + +L + A+FL+
Sbjct: 187 HSMSYLPQV-------DVIIVMSGGKISEMGSYQELLA----------RDGAFAEFLRTY 229
Query: 437 TSRKDQRQ 444
S
Sbjct: 230 ASHHHHHH 237
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 46/215 (21%), Positives = 89/215 (41%), Gaps = 45/215 (20%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
LNG++ + G L A++G G GK++L+ L K G++ I G
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHVAIKG---------S 67
Query: 942 ISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LR- 996
++ Y Q ++ ++ E++LF + + + V++ L P L
Sbjct: 68 VA-YVPQ----QAWIQNDSLRENILFG----------CQLEEPYYRSVIQACALLPDLEI 112
Query: 997 -----QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV- 1050
++ +G GV+ LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 113 LPSGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVI 171
Query: 1051 -RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+ +T + H + D + +M G
Sbjct: 172 GPKGMLKNKTRILVTHS--MSYLPQVDVIIVMSGG 204
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 58.6 bits (143), Expect = 2e-09
Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 37/195 (18%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 936
L +S +P + A G SG GK+T+ AG ITI G P
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE---------ITIDGQPIDN 68
Query: 937 ETFA----RISGYCEQNDIHSPFV---TIYESLLFSAWLRLSP-EVDSETRKMFIDE-VM 987
+ +I G+ Q+ + TI E+L + + ++ F V
Sbjct: 69 ISLENWRSQI-GFVSQD----SAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVE 123
Query: 988 ELVE-LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046
+ + LN + VG GV +S QR+RL IA + NP I+ +DE T+ LD+ + ++V
Sbjct: 124 NMPDQLN----TEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV 178
Query: 1047 MRTVRNTVDTGRTVV 1061
+ + +++ GRT +
Sbjct: 179 QKAL-DSLMKGRTTL 192
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 53.2 bits (129), Expect = 1e-07
Identities = 60/251 (23%), Positives = 98/251 (39%), Gaps = 58/251 (23%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ- 225
IL+D+S +P + GP GK+T+ L PT +G +T +G +D +
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLEN 73
Query: 226 -RTA-AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG-IKPDPDID 282
R+ ++SQ D+ I T+RE L + G T ++ ++ A ++ PD
Sbjct: 74 WRSQIGFVSQ-DSAIMAGTIRENLTYGLE--GDYTDEDLW-QVLDLAFARSFVENMPD-- 127
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI--SGGQKKRVTTGEMMVG 340
L +T VG+ RG+ SGGQ++R+ +
Sbjct: 128 ------------------------QL----NTEVGE---RGVKISGGQRQRLAIARAFLR 156
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI----SLLQPAPETYDLFDDII 396
L +DE + LDS + + L ++ T VI S + A D I
Sbjct: 157 NPKILMLDEATASLDSESESMVQKAL-DSLMKGRTTLVIAHRLSTIVDA-------DKIY 208
Query: 397 LLSDGQIVYQG 407
+ GQI G
Sbjct: 209 FIEKGQITGSG 219
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 56.3 bits (137), Expect = 1e-08
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
+K + + G++ L+G +GKTT L A+AG + G + +NG D+
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHV 77
Query: 227 TA----AYISQHDNHIGEMTVRETL---AFSAR-CQGVGTRYEMLTEL-----ARREKAA 273
A + + E+TV E L A++ + +G+ E + L R ++
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG 137
Query: 274 G 274
G
Sbjct: 138 G 138
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 47.8 bits (115), Expect = 6e-06
Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 28/193 (14%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKK 935
+ + G+ G + L+G +GAGKTT + +AG R G I I+ P
Sbjct: 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76
Query: 936 QETFARISGYCEQNDIHSP-----F--VTIYESLLFSAWLRLSPEVDSETRKMFIDEVME 988
I+ P F +T+YE+L+ A+ R D E K ++ +
Sbjct: 77 VINRMGIA--------LVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFS 124
Query: 989 LV-ELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
L L + L G LS +++ L I L++ P ++ MDEP+ GL + V
Sbjct: 125 LFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF 179
Query: 1048 RTVRNTVDTGRTV 1060
++ G T+
Sbjct: 180 EVIQKINQEGTTI 192
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 1e-08
Identities = 60/295 (20%), Positives = 101/295 (34%), Gaps = 100/295 (33%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE---F 222
+L D+S + PG + ++G GKTTLL LAG P SG ++ +G +
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTN 74
Query: 223 VP--QRTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
+P +R Y+ Q H +TV +A+ T + +R +A
Sbjct: 75 LPVRERRLGYLVQEGVLFPH------LTVYRNIAYGLGNGKGRTA-----QERQRIEAM- 122
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334
L++ G+ A +SGGQ++R
Sbjct: 123 ----------------------------LELTGISELA-----GRYPHELSGGQQQRA-- 147
Query: 335 GEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPA 385
ALA + +DE + LD QI + +G + + +
Sbjct: 148 -------ALARALAPDPELILLDEPFSALDEQLRRQIREDMIA-ALRANGKSAVFV---- 195
Query: 386 PETYD------LFDDIILLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFL 433
++D D I ++ G+I+ P EL +R P A F+
Sbjct: 196 --SHDREEALQYADRIAVMKQGRILQTASPHEL---------YRQPADLDAALFI 239
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 7e-07
Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 25/168 (14%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
LN +S + PG + ++G SG GKTTL+ LAG + G I+ TI
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 941 RISGYCEQNDIHS--PFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
R GY Q P +T+Y ++ + R + ++EL
Sbjct: 80 RRLGYLVQE--GVLFPHLTVYRNIAYGLGNGKGRTAQERQR------IEAMLEL------ 125
Query: 999 LVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
G+ ++G LS Q++R +A L +P +I +DEP S LD +
Sbjct: 126 -TGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 1e-08
Identities = 36/147 (24%), Positives = 72/147 (48%), Gaps = 17/147 (11%)
Query: 898 ALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFARISGYCEQNDIHSP 954
L+G +GAGK+ ++++AG + G + I+ P ++ R G+ Q+ P
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFP 83
Query: 955 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014
+++Y ++ + LR V+ + R + E+ E + + L + LS +R+
Sbjct: 84 HLSVYRNIAYG--LRNVERVERDRR---VREMAEKLGIAHLLDRKP-----ARLSGGERQ 133
Query: 1015 RLTIAVELVANPSIIFMDEPTSGLDAR 1041
R+ +A LV P ++ +DEP S +D +
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 4e-05
Identities = 40/183 (21%), Positives = 61/183 (33%), Gaps = 75/183 (40%)
Query: 183 LLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQ------HD 235
LLGP +GK+ L +AG + P G V NG D+ P +R ++ Q H
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPH- 84
Query: 236 NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEA 295
++V +A+ G R E RR +
Sbjct: 85 -----LSVYRNIAY-------GLRNVERVERDRRVREM---------------------- 110
Query: 296 NVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALA---------LF 346
+ LG+ + D +SGG+++RV ALA L
Sbjct: 111 -------AEKLGIA-----HLLDRKPARLSGGERQRV---------ALARALVIQPRLLL 149
Query: 347 MDE 349
+DE
Sbjct: 150 LDE 152
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 2e-08
Identities = 47/197 (23%), Positives = 71/197 (36%), Gaps = 67/197 (34%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
++ VS I+ G + LLGP SGKTT+L +AG PT G V G + + P
Sbjct: 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQ 85
Query: 225 QRTAAYISQHD---NHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDI 281
+R + Q+ H MTV + ++F R + V E+ R +
Sbjct: 86 KRNVGLVFQNYALFQH---MTVYDNVSFGLREKRVPK-----DEMDARVREL-------- 129
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGP 341
L+ + L+ + +SGGQ++RV
Sbjct: 130 ---------------------LRFMRLE-----SYANRFPHELSGGQQQRV--------- 154
Query: 342 ALA---------LFMDE 349
ALA L DE
Sbjct: 155 ALARALAPRPQVLLFDE 171
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 7e-07
Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 15/161 (9%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
+ GVS R G + L+G SG+GKTT++ ++AG R T G + G ++ P ++
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---- 86
Query: 941 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 1000
R G QN +T+Y+++ F + P+ + + R + E++ + L
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR---VRELLRFMRLESYANRFP 143
Query: 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
LS Q++R+ +A L P ++ DEP + +D +
Sbjct: 144 -----HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 2e-08
Identities = 51/272 (18%), Positives = 91/272 (33%), Gaps = 114/272 (41%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
+LKD++ I+ G+L + G +GKT+LL+ + G+L+ G + ++G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 69
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
++ SQ + I T++E + F G Y+
Sbjct: 70 RISFCSQF-SWIMPGTIKENIIF-------GVSYD------------------------- 96
Query: 287 AIATEGQEANVITDYYLKVLGLDVCA------------DTMVGDEMIRGI--SGGQKKRV 332
Y V + C + ++G+ GI SGGQ+ R+
Sbjct: 97 ------------EYRYRSV--IKACQLEEDISKFAEKDNIVLGE---GGITLSGGQRARI 139
Query: 333 TTGEMMVGPALA----------LFMDEISTGLDSSTTFQIV-NCLRQNIHINSGTAVI-- 379
+LA L LD T +I +C+ + + I
Sbjct: 140 ---------SLARAVYKDADLYLLDSPFGY-LDVLTEKEIFESCVCKLMA---NKTRILV 186
Query: 380 ----SLLQPAPETYDLFDDIILLSDGQIVYQG 407
L+ A D I++L +G + G
Sbjct: 187 TSKMEHLKKA-------DKILILHEGSSYFYG 211
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 42/213 (19%), Positives = 84/213 (39%), Gaps = 43/213 (20%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L ++ G L A+ G +GAGKT+L+ ++ G + G I SG R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 70
Query: 942 ISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQS 998
IS +C Q ++ TI E+++F + V++ +L
Sbjct: 71 IS-FCSQ----FSWIMPGTIKENIIF----------GVSYDEYRYRSVIKACQLEEDISK 115
Query: 999 L-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
+G G++ LS QR R+++A + + + +D P LD + +
Sbjct: 116 FAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 174
Query: 1052 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+ +T + + ++ + D++ ++ G
Sbjct: 175 CKLMANKTRILVTSK--MEHLKKADKILILHEG 205
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 45/213 (21%), Positives = 73/213 (34%), Gaps = 63/213 (29%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKK- 935
L G++ PG +TAL+G +G+GK+T+ G+ + + G P
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK---------VLLDGEPLVQ 85
Query: 936 --------------QET--FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETR 979
QE F R + E++ + + E +
Sbjct: 86 YDHHYLHTQVAAVGQEPLLFGR---------------SFRENIAYGLTRTPTMEEITAVA 130
Query: 980 KM-----FIDEVMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1033
FI P + VG G LS QR+ + +A L+ P ++ +D
Sbjct: 131 MESGAHDFI---SGF----PQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDN 182
Query: 1034 PTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIH 1065
TS LDA V R + + RTV+
Sbjct: 183 ATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 57/273 (20%), Positives = 95/273 (34%), Gaps = 98/273 (35%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
+L+ ++ + PG++T L+GP SGK+T+ L PT G V +G + ++
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHH 89
Query: 226 ---RTAAYISQHDNHIGE-----MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKP 277
A + Q E + RE +A+ T E+ A
Sbjct: 90 YLHTQVAAVGQ------EPLLFGRSFRENIAYG--LTRTPTMEEI-------TAVA---- 130
Query: 278 DPDIDVYMKAIATEGQEANV---ITD----YYLKVLGLDVCADTMVGDEMIRGI--SGGQ 328
E+ I+ Y DT VG+ G SGGQ
Sbjct: 131 ---------------MESGAHDFISGFPQGY-----------DTEVGE---TGNQLSGGQ 161
Query: 329 KKRVTTGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVI 379
++ V ALA L +D ++ LD+ ++ L ++ S T ++
Sbjct: 162 RQAV---------ALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLL 212
Query: 380 -----SLLQPAPETYDLFDDIILLSDGQIVYQG 407
SL + A I+ L +G + QG
Sbjct: 213 ITQQLSLAERA-------HHILFLKEGSVCEQG 238
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 4e-08
Identities = 58/302 (19%), Positives = 102/302 (33%), Gaps = 89/302 (29%)
Query: 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
R + L +VS + G++ ++G +GK+TL+ + PT G+V +G +
Sbjct: 35 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQE 91
Query: 219 MDEFVPQRTAAY------ISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272
+ I QH N + TV +A + +
Sbjct: 92 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD-------EVKRRV 144
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV 332
+ L ++GL D+ + +SGGQK+RV
Sbjct: 145 TEL---------------------------LSLVGLGDKHDSYPSN-----LSGGQKQRV 172
Query: 333 TTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLRQNIHINSGT----------- 376
+ ALA L D+ ++ LD +TT I+ L+ IN
Sbjct: 173 A-----IARALASNPKVLLCDQATSALDPATTRSILELLKD---INRRLGLTILLITHEM 224
Query: 377 AVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEV 436
V+ + D + ++S+G+++ Q V E F+ PK F+Q
Sbjct: 225 DVVK---------RICDCVAVISNGELIEQDT---VSEVFSH-----PKTPLAQKFIQST 267
Query: 437 TS 438
Sbjct: 268 LH 269
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 1e-06
Identities = 50/169 (29%), Positives = 77/169 (45%), Gaps = 30/169 (17%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
LN VS G + ++G SGAGK+TL+ + R T G + ++ + + T A
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 941 RIS-GYCEQ--NDIHSPFVTIYESLLFSAWLRLS--PEVDSETRKMFIDEVMELVELNPL 995
R G Q N + S T++ ++ L L P+ + + R V EL+ L
Sbjct: 104 RRQIGMIFQHFNLLSS--RTVFGNVALP--LELDNTPKDEVKRR------VTELLSL--- 150
Query: 996 RQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
VGL S LS Q++R+ IA L +NP ++ D+ TS LD
Sbjct: 151 ----VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 44/201 (21%), Positives = 76/201 (37%), Gaps = 31/201 (15%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE 937
+L +S + PG L+G +G+GK+TL+ G I I G
Sbjct: 32 GGNAIL-ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGEIQIDGV----- 82
Query: 938 TFARISGYCEQNDIHSPFVTIY-ESLLFSAWLR--LSP---EVDSETRKMFIDEVMELVE 991
+ F I + +FS R L P D E I +V + V
Sbjct: 83 ---SWDSITLE-QWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQE-----IWKVADEVG 133
Query: 992 LNPLRQSLVG------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1045
L + + G + G LS ++ + +A +++ I+ +DEP++ LD I
Sbjct: 134 LRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQI 193
Query: 1046 VMRTVRNTVDTGRTVVCTIHQ 1066
+ RT++ TV+ +
Sbjct: 194 IRRTLKQAF-ADCTVILCEAR 213
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 50/273 (18%), Positives = 93/273 (34%), Gaps = 115/273 (42%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
+LKD++ I+ G+L + G +GKT+LL+ + G+L+ G + ++G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 99
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
++ SQ ++ I T++E + +G Y+
Sbjct: 100 RISFCSQ-NSWIMPGTIKENI--------IGVSYD------------------------- 125
Query: 287 AIATEGQEANVITDYYLKVLGLDVCA------------DTMVGDEMIRGI--SGGQKKRV 332
Y V + C + ++G+ GI SGGQ+ R+
Sbjct: 126 ------------EYRYRSV--IKACQLEEDISKFAEKDNIVLGE---GGITLSGGQRARI 168
Query: 333 TTGEMMVGPALA----------LFMDEISTGLDSSTTFQIV-NCLRQNIHINSGTAVI-- 379
+LA L LD T +I +C+ + + + I
Sbjct: 169 ---------SLARAVYKDADLYLLDSPFG-YLDVLTEKEIFESCVCKLM---ANKTRILV 215
Query: 380 ----SLLQPAPETYDLFDDIILLSDGQIVYQGP 408
L+ A D I++L +G + G
Sbjct: 216 TSKMEHLKKA-------DKILILHEGSSYFYGT 241
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 42/213 (19%), Positives = 88/213 (41%), Gaps = 44/213 (20%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L ++ G L A+ G +GAGKT+L+ ++ G + G I SG R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 100
Query: 942 ISGYCEQNDIHSPFV---TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LR- 996
IS +C Q + ++ TI E+++ ++ D V++ +L +
Sbjct: 101 IS-FCSQ----NSWIMPGTIKENIIGVSY-------DEY----RYRSVIKACQLEEDISK 144
Query: 997 -----QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1051
++G G++ LS QR R+++A + + + +D P LD + +
Sbjct: 145 FAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 203
Query: 1052 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+ +T + + ++ + D++ ++ G
Sbjct: 204 CKLMANKTRILVTSK--MEHLKKADKILILHEG 234
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 4e-07
Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 57/191 (29%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITIS 930
+++ +L ++ + G A +G+SG GK+TL+ DV +G+ I I
Sbjct: 351 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ---------ILID 401
Query: 931 GYPKK---------------QETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSP--- 972
G+ K Q+ S T+ E++L R +
Sbjct: 402 GHNIKDFLTGSLRNQIGLVQQDNIL-FSD------------TVKENILLG---RPTATDE 445
Query: 973 EVDSETRKMFIDE-VMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1030
EV + + +M L P + VG GV LS Q++RL+IA + NP I+
Sbjct: 446 EVVEAAKMANAHDFIMNL----PQGYDTEVGERGV-KLSGGQKQRLSIARIFLNNPPILI 500
Query: 1031 MDEPTSGLDAR 1041
+DE TS LD
Sbjct: 501 LDEATSALDLE 511
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 4e-07
Identities = 39/200 (19%), Positives = 70/200 (35%), Gaps = 76/200 (38%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP- 224
L ++S ++ G ++LGP +GKT L +AG P SG + +G D+ + P
Sbjct: 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPE 70
Query: 225 QRTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ A++ Q H M V++ L F R + + ++
Sbjct: 71 KHDIAFVYQNYSLFPH------MNVKKNLEFGMRMKKI----------KDPKRVL----- 109
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
+ + L ++ + D +SGG+++RV
Sbjct: 110 ---------------DT-------ARDLKIE-----HLLDRNPLTLSGGEQQRV------ 136
Query: 339 VGPALA---------LFMDE 349
ALA L +DE
Sbjct: 137 ---ALARALVTNPKILLLDE 153
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 6e-06
Identities = 37/167 (22%), Positives = 72/167 (43%), Gaps = 30/167 (17%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
L+ +S G ++G +GAGKT ++++AG G I ++ ++
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK---- 71
Query: 941 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDE-VMELVELNPLRQSL 999
+ QN P + + ++L F +R+ +K+ + V++
Sbjct: 72 HDIAFVYQNYSLFPHMNVKKNLEFG--MRM--------KKIKDPKRVLDTARD------- 114
Query: 1000 VGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
+ + + LS +++R+ +A LV NP I+ +DEP S LD R
Sbjct: 115 LKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 6e-07
Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 38/179 (21%)
Query: 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-------TGNITIS 930
K+V L+ V+ G ++G SGAGKTT M ++AG + G + N +
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 931 GYPKKQET---FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 987
P+ ++ F Q P +T +E++ F + + R ++EV
Sbjct: 77 VPPEDRKIGMVF--------QTWALYPNLTAFENIAFPLTNMKMSKEEIRKR---VEEVA 125
Query: 988 ELVELNPL-----RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
++++++ + R+ LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 126 KILDIHHVLNHFPRE----------LSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 48/285 (16%), Positives = 94/285 (32%), Gaps = 86/285 (30%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
L +V+ I+ G +LGP +GKTT + +AG P+ +G + ++ +
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKL 75
Query: 226 RTAAYISQHDNHIG----------EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI 275
D IG +T E +AF +
Sbjct: 76 IVPP----EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKM------------------- 112
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTG 335
+I ++ +A K+L + V + R +SG Q++RV
Sbjct: 113 -SKEEIRKRVEEVA--------------KILDI-----HHVLNHFPRELSGAQQQRVALA 152
Query: 336 EMMVGPALALFMDEISTGLDS----STTFQIVNCLRQNIHINSGTAVISLLQPAPETYD- 390
+V L +DE + LD+ S + + + G ++ + ++D
Sbjct: 153 RALVKDPSLLLLDEPFSNLDARMRDSARALV-----KEVQSRLGVTLLVV------SHDP 201
Query: 391 -----LFDDIILLSDGQI--------VYQGPREL-VLEFFASMGF 421
+ D + +L G++ +Y P + V +
Sbjct: 202 ADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEINE 246
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 9e-07
Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 39/182 (21%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITIS 930
++K L + VS + G AL+G SG+GK+T+ DV +G I +
Sbjct: 354 KEKPAL-SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS---------ICLD 403
Query: 931 GYPKKQETFA---RISGYCEQ-----NDIHSPFVTIYESLLFSAWLRLSPE-VDSETRKM 981
G+ + R Q ND TI ++ ++A + E ++ R+
Sbjct: 404 GHDVRDYKLTNLRRHFALVSQNVHLFND------TIANNIAYAAEGEYTREQIEQAARQA 457
Query: 982 FIDE-VMELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1039
E + + P +++G G S LS QR+R+ IA L+ + ++ +DE TS LD
Sbjct: 458 HAMEFIENM----PQGLDTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSALD 512
Query: 1040 AR 1041
Sbjct: 513 TE 514
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 2e-06
Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 38/176 (21%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGNITISGYPKKQ 936
L ++ G AL+G SG+GK+T+ D+ G I + G+ ++
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH---------ILMDGHDLRE 409
Query: 937 ETFA---RISGYCEQ-----NDIHSPFVTIYESLLFSAWLRLSPE-VDSETRKMFIDE-V 986
T A Q ND T+ ++ ++ S E ++ R + + +
Sbjct: 410 YTLASLRNQVALVSQNVHLFND------TVANNIAYARTEEYSREQIEEAARMAYAMDFI 463
Query: 987 MELVELNPLR-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041
++ +++G GV LS QR+R+ IA L+ + I+ +DE TS LD
Sbjct: 464 NKM----DNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 1008 LSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1061
LS +R L +A L S++ +DEPT LD ++ + + V+
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 1062 CTIHQPSIDIFEAFDELFLMKRGGQEIYV 1090
H ++ +A D + + V
Sbjct: 309 LVSHDE--ELKDAADHVIRISLENGSSKV 335
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 52/183 (28%), Positives = 83/183 (45%), Gaps = 34/183 (18%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGY----- 932
LN ++ + G AL+G SG+GK+TL+ +AG T G I
Sbjct: 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTEL 70
Query: 933 -PKKQET---FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVME 988
PK + F QN P +T+Y+++ F LR +P + + + + EV +
Sbjct: 71 PPKDRNVGLVF--------QNWALYPHMTVYKNIAFPLELRKAPREEIDKK---VREVAK 119
Query: 989 LVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIV 1046
++ ++ L L P LS Q++R+ IA LV P ++ +DEP S LDA R
Sbjct: 120 MLHIDKL---LNRYP--WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE--- 171
Query: 1047 MRT 1049
+R
Sbjct: 172 VRA 174
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 49/195 (25%), Positives = 77/195 (39%), Gaps = 63/195 (32%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T L +++ IK G LLGP SGK+TLL +AG PT SG + ++ D+ E P+
Sbjct: 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPK 73
Query: 226 -RTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
R + Q H MTV + +AF + P
Sbjct: 74 DRNVGLVFQNWALYPH------MTVYKNIAFPLELRKA--------------------PR 107
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMI----RGISGGQKKRVTT 334
+ID ++ +A K+L + D+++ +SGGQ++RV
Sbjct: 108 EEIDKKVREVA--------------KMLHI---------DKLLNRYPWQLSGGQQQRVAI 144
Query: 335 GEMMVGPALALFMDE 349
+V L +DE
Sbjct: 145 ARALVKEPEVLLLDE 159
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 34/163 (20%)
Query: 899 LMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGY------PKKQE---TFARISGYCEQ 948
L+G SG GKTT + ++AG + T G I PK + F Q
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPKDRNISMVF--------Q 90
Query: 949 NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 1008
+ P +T+YE++ F ++ P+ + + R + EL+++ L L P L
Sbjct: 91 SYAVWPHMTVYENIAFPLKIKKFPKDEIDKR---VRWAAELLQIEEL---LNRYPA--QL 142
Query: 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1049
S QR+R+ +A +V P ++ MDEP S LDA R A MR
Sbjct: 143 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA---MRA 182
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 54/188 (28%), Positives = 80/188 (42%), Gaps = 44/188 (23%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GNITISGY----- 932
K+ ++GVS + G AL+G SG GKTT + +LAG T G I
Sbjct: 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVNDI 70
Query: 933 -PKKQET---FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVME 988
PK +E F QN P +T++E++ F R + + E R + E+
Sbjct: 71 PPKYREVGMVF--------QNYALYPHMTVFENIAFPLRARRISKDEVEKR---VVEIAR 119
Query: 989 LVELNPL-----RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--R 1041
+ ++ L Q LS Q++R+ +A LV P ++ DEP S LDA R
Sbjct: 120 KLLIDNLLDRKPTQ----------LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLR 169
Query: 1042 AAAIVMRT 1049
MR
Sbjct: 170 MI---MRA 174
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 8e-04
Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 22/119 (18%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
+ + VS +K G LLGP GKTT LL LAG PT SG + ++ +++ P
Sbjct: 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPP 72
Query: 225 -QRTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARR-EKAAGI 275
R + Q H MTV E +AF R + + E+ +R + A
Sbjct: 73 KYREVGMVFQNYALYPH------MTVFENIAFPLRARRISK-----DEVEKRVVEIARK 120
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1073
RL +++ L S++ +DEPT LD ++ + + V+ H ++ +
Sbjct: 70 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKD 127
Query: 1074 AFDELFLMKRGGQEIYVGPLG 1094
A D + I +
Sbjct: 128 AADHV---------IRISLEN 139
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1226 | ||||
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 5e-29 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-26 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 4e-28 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 3e-22 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-27 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-25 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 4e-27 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-18 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 4e-25 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 9e-21 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 7e-25 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-24 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-24 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-22 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-24 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-21 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-24 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-18 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-23 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 5e-23 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-22 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-20 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-22 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-20 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-22 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 6e-19 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-21 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-19 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-21 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-20 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 6e-21 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-19 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 6e-20 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-15 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-19 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-18 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-19 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-19 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-15 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 6e-14 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 6e-08 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 8e-05 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-04 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 7e-07 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-05 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 5e-05 | |
| d1svma_ | 362 | c.37.1.20 (A:) Papillomavirus large T antigen heli | 8e-05 | |
| d1n0wa_ | 242 | c.37.1.11 (A:) DNA repair protein Rad51, catalytic | 9e-05 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 5e-04 | |
| d1szpa2 | 251 | c.37.1.11 (A:145-395) DNA repair protein Rad51, ca | 0.002 | |
| d2i1qa2 | 258 | c.37.1.11 (A:65-322) DNA repair protein Rad51, cat | 0.002 | |
| d1nlfa_ | 274 | c.37.1.11 (A:) Hexameric replicative helicase repA | 0.003 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 114 bits (287), Expect = 5e-29
Identities = 56/271 (20%), Positives = 98/271 (36%), Gaps = 54/271 (19%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
T + ++ IK G +LLGP GKTT L +AG +PT G + + D+ P
Sbjct: 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPP 75
Query: 225 -QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
R + + Q MTV E +AF + +
Sbjct: 76 KDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFP-------------------------- 109
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
E + + ++L ++ + +SGGQ++RV +V
Sbjct: 110 --------KDEIDKRVRWAAELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPD 156
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L MDE + LD+ + +++ + I + E + D I +++ GQ+
Sbjct: 157 VLLMDEPLSNLDAKLRVAMRAEIKK-LQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL 215
Query: 404 VYQG-PRELVLEFFASMGFRCPKRKGVADFL 433
+ G P E+ + P VA F+
Sbjct: 216 LQIGSPTEV---------YLRPNSVFVATFI 237
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 107 bits (269), Expect = 1e-26
Identities = 50/213 (23%), Positives = 85/213 (39%), Gaps = 23/213 (10%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 936
+N ++ + G L+G SG GKTT + ++AG T G I
Sbjct: 17 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG----RIYFGDRDVTY 72
Query: 937 -ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 995
R Q+ P +T+YE++ F ++ + + + EL+++ L
Sbjct: 73 LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEEL 129
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TV 1054
+ LS QR+R+ +A +V P ++ MDEP S LDA+ + ++
Sbjct: 130 LNRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 184
Query: 1055 DTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1084
T + H D EA D + +M RG
Sbjct: 185 KLKVTTIYVTH----DQVEAMTMGDRIAVMNRG 213
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 111 bits (279), Expect = 4e-28
Identities = 54/219 (24%), Positives = 101/219 (46%), Gaps = 12/219 (5%)
Query: 872 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIT 928
K + E+ + L V+ + G ++MG SG+GK+T+++++ + T G + NI
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIK 68
Query: 929 ISGYPKKQETFARIS--GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEV 986
+ + T R G+ Q P +T E++ + + E R+ E
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC 128
Query: 987 MELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1046
+++ EL + P + LS Q++R+ IA L NP II D+PT LD++ +
Sbjct: 129 LKMAEL--EERFANHKP--NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKI 184
Query: 1047 MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
M+ ++ + G+TVV H I++ + + +K G
Sbjct: 185 MQLLKKLNEEDGKTVVVVTH--DINVARFGERIIYLKDG 221
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 94.5 bits (235), Expect = 3e-22
Identities = 47/257 (18%), Positives = 91/257 (35%), Gaps = 47/257 (18%)
Query: 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
+ + LK+V+ IK G ++GP SGK+T+L + PT G V +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIK 68
Query: 219 MDEFVPQRTA-------AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREK 271
++ ++ Q N I +T E + + G ++ RR++
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGA----MSGEERRKR 124
Query: 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKR 331
A + + A+ +SGGQ++R
Sbjct: 125 AL--------------------------ECLKMAELEERFANHKPNQ-----LSGGQQQR 153
Query: 332 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDL 391
V + + D+ + LDS T +I+ L++ ++ G V+ ++
Sbjct: 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK-LNEEDGKTVV-VVTHDINVARF 211
Query: 392 FDDIILLSDGQIVYQGP 408
+ II L DG++ +
Sbjct: 212 GERIIYLKDGEVEREEK 228
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 110 bits (276), Expect = 2e-27
Identities = 51/208 (24%), Positives = 86/208 (41%), Gaps = 8/208 (3%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
L+GVS + G +T ++G +G+GK+TL++V+ G + G + + E +
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVG 1001
Q +T+ E+LL ++S K +I + E+VE +
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 1002 LPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056
L LS Q K + I L+ NP +I MDEP +G+ A + V
Sbjct: 140 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 199
Query: 1057 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
G T + H+ + D L++M G
Sbjct: 200 GITFLIIEHRLD-IVLNYIDHLYVMFNG 226
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 104 bits (261), Expect = 2e-25
Identities = 54/254 (21%), Positives = 88/254 (34%), Gaps = 35/254 (13%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
L VS + G +TL++GP SGK+TL+ + G L G V + D+ P
Sbjct: 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEP 73
Query: 225 ----QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280
Q + EMTV E L C G + + ++
Sbjct: 74 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEE-------- 125
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVG 340
E L+ L L D G+ +SGGQ K V G ++
Sbjct: 126 -------------EMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMT 167
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400
+ MDE G+ I N + + G + + + D + ++ +
Sbjct: 168 NPKMIVMDEPIAGVAPGLAHDIFNHVLE--LKAKGITFLIIEHRLDIVLNYIDHLYVMFN 225
Query: 401 GQIVYQGPRELVLE 414
GQI+ +G E ++
Sbjct: 226 GQIIAEGRGEEEIK 239
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 109 bits (273), Expect = 4e-27
Identities = 47/207 (22%), Positives = 82/207 (39%), Gaps = 19/207 (9%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFAR 941
+ G+ G + L+G +GAGKTT + +AG R G I N
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 942 ISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL-VELNPLRQSLV 1000
+ P +T+YE+L+ A+ R D E K ++ + L L + L
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQLG 137
Query: 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1060
G LS +++ L I L++ P ++ MDEP+ GL + V ++ G T+
Sbjct: 138 G-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTI 192
Query: 1061 VCTIHQPSIDIFEAF---DELFLMKRG 1084
+ + A ++++ G
Sbjct: 193 LLVEQ----NALGALKVAHYGYVLETG 215
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 84.2 bits (208), Expect = 2e-18
Identities = 45/251 (17%), Positives = 86/251 (34%), Gaps = 42/251 (16%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPT-LKVSGTVTYNGHDMDEFV 223
+ +K + + G++ L+G +GKTT L A+AG + K+ + +
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 224 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ A + + E+TV E L A + + E
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIK-----RDLEWI----------- 122
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
+ L + G +SGG+++ + G ++
Sbjct: 123 ------------------FSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPK 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L MDE S GL ++ +++ GT ++ + Q A + +L GQI
Sbjct: 160 LLMMDEPSLGLAPILVSEVFEVIQK--INQEGTTILLVEQNALGALKVAHYGYVLETGQI 217
Query: 404 VYQGPRELVLE 414
V +G +L+
Sbjct: 218 VLEGKASELLD 228
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 103 bits (259), Expect = 4e-25
Identities = 55/263 (20%), Positives = 97/263 (36%), Gaps = 46/263 (17%)
Query: 162 KRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE 221
ILKD++ I+ G +G GK+TL+ + D T SG + +GH++ +
Sbjct: 28 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKD 84
Query: 222 FVPQRTAAYIS--QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
F+ I Q DN + TV+E + G E+ K A
Sbjct: 85 FLTGSLRNQIGLVQQDNILFSDTVKENILL-------GRPTATDEEVVEAAKMANAHDF- 136
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
++ L DT VG E +SGGQK+R++ + +
Sbjct: 137 -------------------------IMNLPQGYDTEVG-ERGVKLSGGQKQRLSIARIFL 170
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399
L +DE ++ LD + I L ++ + ++ T D I+++
Sbjct: 171 NNPPILILDEATSALDLESESIIQEALDV---LSKDRTTL-IVAHRLSTITHADKIVVIE 226
Query: 400 DGQIVYQGPRELVLE---FFASM 419
+G IV G ++ + +
Sbjct: 227 NGHIVETGTHRELIAKQGAYEHL 249
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 91.0 bits (226), Expect = 9e-21
Identities = 52/238 (21%), Positives = 99/238 (41%), Gaps = 21/238 (8%)
Query: 849 LPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 908
+ + + D V + + +++ +L ++ + G A +G+SG GK+
Sbjct: 10 IEIKQGRIDIDHVSFQYN-----------DNEAPILKDINLSIEKGETVAFVGMSGGGKS 58
Query: 909 TLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCE--QNDIHSPFVTIYESLLFSA 966
TL++++ +G I I G+ K + Q D T+ E++L
Sbjct: 59 TLINLIPRFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR 116
Query: 967 WLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANP 1026
EV + + + L + VG GV LS Q++RL+IA + NP
Sbjct: 117 PTATDEEVVEAAKMANAHDFIM--NLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNP 173
Query: 1027 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
I+ +DE TS LD + +I+ + + RT + H+ S D++ +++ G
Sbjct: 174 PILILDEATSALDLESESIIQEALDV-LSKDRTTLIVAHRLS--TITHADKIVVIENG 228
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 102 bits (256), Expect = 7e-25
Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 14/218 (6%)
Query: 872 KVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIT 928
KV + LN VS G + ++G SGAGK+TL+ + R T G +
Sbjct: 9 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQE 68
Query: 929 ISGYPKKQETFARIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 987
++ + + T AR G Q+ T++ ++ L +P+ + + R + E++
Sbjct: 69 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR---VTELL 125
Query: 988 ELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1047
LV L S S LS Q++R+ IA L +NP ++ DE TS LD ++
Sbjct: 126 SLVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180
Query: 1048 RTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
+++ G T++ H+ + + D + ++ G
Sbjct: 181 ELLKDINRRLGLTILLITHEMDV-VKRICDCVAVISNG 217
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 101 bits (254), Expect = 1e-24
Identities = 52/280 (18%), Positives = 97/280 (34%), Gaps = 57/280 (20%)
Query: 159 PSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHD 218
R + L +VS + G++ ++G +GK+TL+ + PT G+V +G +
Sbjct: 12 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQE 68
Query: 219 MDEFVPQRTA------AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272
+ I QH N + TV +A + +
Sbjct: 69 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD-------EVKRRV 121
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRV 332
L ++GL D+ + +SGGQK+RV
Sbjct: 122 ---------------------------TELLSLVGLGDKHDSYPSN-----LSGGQKQRV 149
Query: 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392
+ L DE ++ LD +TT + + L ++I+ G ++ + +
Sbjct: 150 AIARALASNPKVLLCDEATSALDPATT-RSILELLKDINRRLGLTILLITHEMDVVKRIC 208
Query: 393 DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADF 432
D + ++S+G+++ Q V F PK F
Sbjct: 209 DCVAVISNGELIEQDTVSEV--------FSHPKTPLAQKF 240
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 101 bits (253), Expect = 1e-24
Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 13/208 (6%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQ 936
K +L G+S G + L+G +GAGKTT + +++ + + G +T + ++
Sbjct: 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEP 70
Query: 937 ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
++ Y + + E L F A S + E ++ E+ L
Sbjct: 71 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM---VERATEIAGLGEKI 127
Query: 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056
+ V S S ++L IA L+ NP + +DEPTSGLD A V + ++
Sbjct: 128 KDRV-----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 182
Query: 1057 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
G T++ + H ++ D + L+ G
Sbjct: 183 GLTILVSSHNML-EVEFLCDRIALIHNG 209
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 94.7 bits (235), Expect = 3e-22
Identities = 55/276 (19%), Positives = 95/276 (34%), Gaps = 56/276 (20%)
Query: 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP 224
ILK +S I+ G + L+GP +GKTT L ++ + P+ SG VT G ++ E
Sbjct: 15 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPH 71
Query: 225 Q--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ + +Y+ + M E L F A +
Sbjct: 72 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS----------------------- 108
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
E + + ++ GL V S G +++ ++
Sbjct: 109 -----------EIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNP 152
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+DE ++GLD ++ L+Q G ++ E L D I L+ +G
Sbjct: 153 RLAILDEPTSGLDVLNAREVRKILKQ--ASQEGLTILVSSHNMLEVEFLCDRIALIHNGT 210
Query: 403 IVYQG-PRELVLEFFASMGFRCPKRKGVADFLQEVT 437
IV G EL K + + + +EV
Sbjct: 211 IVETGTVEEL---------KERYKAQNIEEVFEEVV 237
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 102 bits (255), Expect = 1e-24
Identities = 46/218 (21%), Positives = 89/218 (40%), Gaps = 27/218 (12%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
L GVS R G + +++G SG+GK+T + + + + G I I+ K
Sbjct: 18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 77
Query: 941 RIS-----------GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMEL 989
Q+ +T+ E+++ A +++ + R+ + +
Sbjct: 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME-APIQVLGLSKHDARER-ALKYLAK 135
Query: 990 VELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1049
V ++ Q LS Q++R++IA L P ++ DEPTS LD V+R
Sbjct: 136 VGIDERAQGKY----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI 191
Query: 1050 VRNTVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1084
++ + G+T+V H ++ A + + +G
Sbjct: 192 MQQLAEEGKTMVVVTH----EMGFARHVSSHVIFLHQG 225
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 93.8 bits (233), Expect = 1e-21
Identities = 59/300 (19%), Positives = 107/300 (35%), Gaps = 68/300 (22%)
Query: 153 NYLRIIPSKKR--HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSG 210
N L +I KR +LK VS + G + ++G SGK+T L + P+ G
Sbjct: 1 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EG 57
Query: 211 TVTYNGHDMDEFVPQ----------------RTAAYISQHDNHIGEMTVRETLAFSARCQ 254
+ NG +++ + + QH N MTV E + +
Sbjct: 58 AIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPI-- 115
Query: 255 GVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADT 314
+ L++ RE+A YL +G+D A
Sbjct: 116 ----QVLGLSKHDARERA---------------------------LKYLAKVGIDERAQ- 143
Query: 315 MVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINS 374
+ +SGGQ++RV+ + L DE ++ LD +++ ++Q
Sbjct: 144 ---GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQ--LAEE 198
Query: 375 GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQ 434
G ++ + + +I L G+I +G E + F + P+ + FL+
Sbjct: 199 GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPE---QVFGN-----PQSPRLQQFLK 250
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 99 bits (249), Expect = 2e-24
Identities = 36/187 (19%), Positives = 76/187 (40%), Gaps = 16/187 (8%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 943
L ++ G + G +G GKTTL+ ++ + G I +G P +
Sbjct: 17 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK--VKGKI 72
Query: 944 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 1003
+ + I +++ + L A L K I + +E VE+ L++
Sbjct: 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKV-----NKNEIMDALESVEVLDLKKK----- 122
Query: 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVC 1062
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G ++
Sbjct: 123 -LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 181
Query: 1063 TIHQPSI 1069
+ + S
Sbjct: 182 SREELSY 188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 82.7 bits (204), Expect = 2e-18
Identities = 35/221 (15%), Positives = 74/221 (33%), Gaps = 48/221 (21%)
Query: 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
S +L+ ++ I+ G + GP GKTTLL ++ L P G + YNG +
Sbjct: 9 SVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPI 65
Query: 220 DEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279
+ + ++ + +++V + L A GV + +
Sbjct: 66 TKV--KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDA------------- 110
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMV 339
L+ + + + +S G +RV ++
Sbjct: 111 -----------------------LESVEVLDLKK------KLGELSQGTIRRVQLASTLL 141
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVIS 380
A +D+ +D + +++ + + I G +IS
Sbjct: 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILE-ILKEKGIVIIS 181
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 100 bits (250), Expect = 1e-23
Identities = 39/201 (19%), Positives = 79/201 (39%), Gaps = 19/201 (9%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARIS 943
L ++ G + A+ G +G+GKT+L+ ++ G G I SG R+
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RV- 99
Query: 944 GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLP 1003
+C Q P TI E+++F E ++ ++ + +++G
Sbjct: 100 SFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG-E 154
Query: 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1063
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 155 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 214
Query: 1064 IHQPSIDIFEAFDELFLMKRG 1084
+ D++ ++ +G
Sbjct: 215 TSKME--HLRKADKILILHQG 233
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 98.5 bits (245), Expect = 5e-23
Identities = 50/281 (17%), Positives = 93/281 (33%), Gaps = 60/281 (21%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR 226
+LK+++ I+ G + + G SGKT+LL+ + G+L+ + G + ++G F Q
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGRVS--FCSQ- 104
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMK 286
+ I T++E + F KA ++
Sbjct: 105 --------FSWIMPGTIKENIIFGVSYDEY--------RYKSVVKACQLQ---------- 138
Query: 287 AIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALF 346
+ +T++G E +SGGQ+ R++ + A
Sbjct: 139 ----------------QDITKFAEQDNTVLG-EGGVTLSGGQRARISLARAVYKDADLYL 181
Query: 347 MDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 406
+D LD T Q+ + N +++ E D I++L G +
Sbjct: 182 LDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS---KMEHLRKADKILILHQGSSYFY 238
Query: 407 G-PREL-------VLEFFASMGFRCPKRKGVADFLQEVTSR 439
G EL + F + + L E R
Sbjct: 239 GTFSELQSLRPDFSSKLMGYDTFDQFTEERRSSILTETLRR 279
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.5 bits (240), Expect = 1e-22
Identities = 50/264 (18%), Positives = 107/264 (40%), Gaps = 45/264 (17%)
Query: 162 KRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE 221
+ + +L+ ++ ++PG +T L+GP SGK+T+ L PT G + +G + +
Sbjct: 24 RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQ 80
Query: 222 FVPQ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ + R A + Q + + +++E +A+ G+
Sbjct: 81 YEHRYLHRQVAAVGQ-EPQVFGRSLQENIAY------------------------GLTQK 115
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
P ++ A G + GL DT V + + +SGGQ++ V +
Sbjct: 116 PTMEEITAAAVKSGAH--------SFISGLPQGYDTEVDEAGSQ-LSGGQRQAVALARAL 166
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398
+ L +D+ ++ LD+++ Q+ L ++ S + ++ + D I+ L
Sbjct: 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHILFL 224
Query: 399 SDGQIVYQGPRELVLE---FFASM 419
G I G + ++E + +M
Sbjct: 225 EGGAIREGGTHQQLMEKKGCYWAM 248
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.3 bits (224), Expect = 1e-20
Identities = 47/234 (20%), Positives = 94/234 (40%), Gaps = 21/234 (8%)
Query: 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 914
+ F +V ++ ++ V L G++ RPG +TAL+G +G+GK+T+ +L
Sbjct: 11 LVQFQDVSFAYPNRPDVLV----------LQGLTFTLRPGEVTALVGPNGSGKSTVAALL 60
Query: 915 AG--RKTGGYIT-GNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLS 971
+ TGG + + Y + R Q ++ E++ + + +
Sbjct: 61 QNLYQPTGGQLLLDGKPLPQYEHRY--LHRQVAAVGQEPQVFGR-SLQENIAYGLTQKPT 117
Query: 972 PEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1031
E + + P S LS QR+ + +A L+ P ++ +
Sbjct: 118 MEEITAAAVK--SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLIL 175
Query: 1032 DEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
D+ TS LDA + V + + + + R+V+ S + E D + ++ G
Sbjct: 176 DDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEGG 227
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 96.1 bits (239), Expect = 1e-22
Identities = 40/204 (19%), Positives = 77/204 (37%), Gaps = 11/204 (5%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFA 940
L ++ G AL+G SG+GK+T+ ++ G+I + G+ ++ +
Sbjct: 31 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLASLR 88
Query: 941 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 1000
QN +++ R + M+ + +
Sbjct: 89 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAAR---MAYAMDFINKMDNGLDTI 145
Query: 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1060
LS QR+R+ IA L+ + I+ +DE TS LD + + + + RT
Sbjct: 146 IGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE-LQKNRTS 204
Query: 1061 VCTIHQPSIDIFEAFDELFLMKRG 1084
+ H+ S E DE+ +++ G
Sbjct: 205 LVIAHRLS--TIEQADEIVVVEDG 226
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 89.9 bits (223), Expect = 2e-20
Identities = 48/264 (18%), Positives = 100/264 (37%), Gaps = 47/264 (17%)
Query: 162 KRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDE 221
R + L++++ I G+ L+G SGK+T+ + D G + +GHD+ E
Sbjct: 25 GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLRE 81
Query: 222 FVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ + A +SQ+ + + T ++ + A
Sbjct: 82 YTLASLRNQVALVSQNVHLFNDTVANNIAYA-------RTEEYSREQIEEAARMAYAMDF 134
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
+ +D DT++G E +SGGQ++R+ +
Sbjct: 135 --------------------------INKMDNGLDTIIG-ENGVLLSGGQRQRIAIARAL 167
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398
+ + L +DE ++ LD+ + I L + + + ++ T + D+I+++
Sbjct: 168 LRDSPILILDEATSALDTESERAIQAALDE---LQKNRTSL-VIAHRLSTIEQADEIVVV 223
Query: 399 SDGQIVYQGPRELVLE---FFASM 419
DG IV +G +L +A +
Sbjct: 224 EDGIIVERGTHSELLAQHGVYAQL 247
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 94.6 bits (235), Expect = 3e-22
Identities = 43/211 (20%), Positives = 80/211 (37%), Gaps = 27/211 (12%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---KKQETFA 940
L +SG R G + L+G +GAGK+TL+ +AG +G G+I +G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 71
Query: 941 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 1000
Y Q ++ L + TR +++V + L+
Sbjct: 72 LHRAYLSQQQTPPFATPVWHYLTLHQHDK--------TRTELLNDVAGALALDDKLGRST 123
Query: 1001 GLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053
LS + +R+ +A ++ ++ +DEP + LD + + + +
Sbjct: 124 N-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 1054 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
G +V + H + +L+K G
Sbjct: 179 CQQGLAIVMSSHDLN-HTLRHAHRAWLLKGG 208
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 85.0 bits (210), Expect = 6e-19
Identities = 49/259 (18%), Positives = 83/259 (32%), Gaps = 60/259 (23%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
T L +SG ++ G + L+GP +GK+TLL +AG + G++ + G ++ +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSG---KGSIQFAGQPLEAWSAT 68
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
+ A AY+SQ V L
Sbjct: 69 KLALHRAYLSQQQTPPFATPVWHYLTLHQH------------------------------ 98
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+ + + L LD +SGG+ +RV +++
Sbjct: 99 ---------DKTRTELLNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQIT 144
Query: 343 LA-------LFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDI 395
L +DE LD + + L G A++ T
Sbjct: 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ--QGLAIVMSSHDLNHTLRHAHRA 202
Query: 396 ILLSDGQIVYQGPRELVLE 414
LL G+++ G RE VL
Sbjct: 203 WLLKGGKMLASGRREEVLT 221
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 93.4 bits (232), Expect = 1e-21
Identities = 49/210 (23%), Positives = 92/210 (43%), Gaps = 12/210 (5%)
Query: 878 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP---K 934
D V+L+ ++ + + G + ++G SG+GK+TL ++ + I G+
Sbjct: 13 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ--VLIDGHDLALA 70
Query: 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP 994
R G Q D +I +++ + +V + + + +
Sbjct: 71 DPNWLRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSVEKVIYAAK---LAGAHDFISELR 126
Query: 995 LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1054
+ + +GLS QR+R+ IA LV NP I+ DE TS LD + ++MR + +
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-I 185
Query: 1055 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
GRTV+ H+ S + D + +M++G
Sbjct: 186 CKGRTVIIIAHRLS--TVKNADRIIVMEKG 213
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 86.9 bits (215), Expect = 2e-19
Identities = 54/251 (21%), Positives = 94/251 (37%), Gaps = 45/251 (17%)
Query: 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ- 225
IL +++ IK G + ++G SGK+TL + P +G V +GHD+ P
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNW 74
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
R + Q DN + ++ + ++ + V ++ K AG
Sbjct: 75 LRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSV-------EKVIYAAKLAGA-------- 118
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
+ + E G+SGGQ++R+ +V
Sbjct: 119 -------------------HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L DE ++ LD + I+ + + I G VI + T D II++ G+I
Sbjct: 160 ILIFDEATSALDYESEHVIMRNMHK---ICKGRTVIIIAH-RLSTVKNADRIIVMEKGKI 215
Query: 404 VYQGPRELVLE 414
V QG + +L
Sbjct: 216 VEQGKHKELLS 226
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 92.3 bits (229), Expect = 2e-21
Identities = 52/211 (24%), Positives = 90/211 (42%), Gaps = 19/211 (9%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQET 938
++V+ ++ G +G SG GK+TL+ ++AG +T + I
Sbjct: 11 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD--LFIGEKRMNDTP 68
Query: 939 FARIS-GYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQ 997
A G Q+ P +++ E++ F L + + R +++V E+++L L
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR---VNQVAEVLQLAHLLD 125
Query: 998 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 1056
LS QR+R+ I LVA PS+ +DEP S LDA + +
Sbjct: 126 RK-----PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL 180
Query: 1057 GRTVVCTIHQPSIDIFEAF---DELFLMKRG 1084
GRT++ H D EA D++ ++ G
Sbjct: 181 GRTMIYVTH----DQVEAMTLADKIVVLDAG 207
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 90.0 bits (223), Expect = 1e-20
Identities = 56/272 (20%), Positives = 96/272 (35%), Gaps = 54/272 (19%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV 223
+ + KD++ I G + +GP GK+TLL +AG T SG + M++
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTP 68
Query: 224 PQRTA-AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDID 282
P + Q ++V E ++F + G ++
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKE-------VINQRV---------- 111
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPA 342
+ +VL L D +SGGQ++RV G +V
Sbjct: 112 -----------------NQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEP 149
Query: 343 LALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+DE + LD++ + +H G +I + E L D I++L G+
Sbjct: 150 SVFLLDEPLSNLDAA-LRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGR 208
Query: 403 IVYQG-PRELVLEFFASMGFRCPKRKGVADFL 433
+ G P EL + P + VA F+
Sbjct: 209 VAQVGKPLEL---------YHYPADRFVAGFI 231
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 91.1 bits (226), Expect = 6e-21
Identities = 54/259 (20%), Positives = 87/259 (33%), Gaps = 45/259 (17%)
Query: 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ 225
IL+D+S +P + GP GK+T+ L PT +G +T +G +D +
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLE 72
Query: 226 RTAAYIS--QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ I D+ I T+RE L + + +LA PD
Sbjct: 73 NWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQL--- 129
Query: 284 YMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL 343
+T VG E ISGGQ++R+ +
Sbjct: 130 -----------------------------NTEVG-ERGVKISGGQRQRLAIARAFLRNPK 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L +DE + LDS + + L + G + + T D I + GQI
Sbjct: 160 ILMLDEATASLDSESESMVQKALDS---LMKGRTTLVIAH-RLSTIVDADKIYFIEKGQI 215
Query: 404 VYQGPRELVLE---FFASM 419
G ++ +A
Sbjct: 216 TGSGKHNELVATHPLYAKY 234
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 86.8 bits (215), Expect = 2e-19
Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 11/204 (5%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFA 940
L +S +P + A G SG GK+T+ +L + T G IT I + +
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLEN--WR 75
Query: 941 RISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLV 1000
G+ Q+ TI E+L + + E + + VE P + +
Sbjct: 76 SQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLD--LAFARSFVENMPDQLNTE 132
Query: 1001 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1060
+S QR+RL IA + NP I+ +DE T+ LD+ + ++V + + + + GRT
Sbjct: 133 VGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS-LMKGRTT 191
Query: 1061 VCTIHQPSIDIFEAFDELFLMKRG 1084
+ H+ S D+++ +++G
Sbjct: 192 LVIAHRLS--TIVDADKIYFIEKG 213
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 88.2 bits (218), Expect = 6e-20
Identities = 56/276 (20%), Positives = 105/276 (38%), Gaps = 57/276 (20%)
Query: 160 SKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219
S+K L ++S ++ G ++LGP +GKT L +AG P SG + +G D+
Sbjct: 8 SRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDV 64
Query: 220 DEFVPQR-TAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPD 278
+ P++ A++ Q+ + M V++ L F R + + ++
Sbjct: 65 TDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK----------DPKRVLDT--- 111
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338
+ L ++ D +SGG+++RV +
Sbjct: 112 ------------------------ARDLKIEHLL-----DRNPLTLSGGEQQRVALARAL 142
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL 398
V L +DE + LD T + + +H + V+ + E + D I ++
Sbjct: 143 VTNPKILLLDEPLSALD-PRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVV 201
Query: 399 SDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFL 433
DG+++ G P E+ F P VA F+
Sbjct: 202 MDGKLIQVGKPEEI---------FEKPVEGRVASFV 228
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 74.3 bits (182), Expect = 3e-15
Identities = 40/203 (19%), Positives = 76/203 (37%), Gaps = 16/203 (7%)
Query: 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG-YPKKQETFARI 942
L+ +S G ++G +GAGKT ++++AG I + G
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR--ILLDGKDVTDLSPEKHD 73
Query: 943 SGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGL 1002
+ QN P + + ++L F ++ + + +++ L
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMK------KIKDPKRVLDTARDLKIEHLLDRN--- 124
Query: 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1061
LS +++R+ +A LV NP I+ +DEP S LD R + TV+
Sbjct: 125 --PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 1062 CTIHQPSIDIFEAFDELFLMKRG 1084
H + + D + ++ G
Sbjct: 183 HITHDQT-EARIMADRIAVVMDG 204
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 87.7 bits (217), Expect = 1e-19
Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 21/215 (9%)
Query: 879 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKK 935
++ + +S + G L+G SG GKTT + ++AG + G I G+ ++ K
Sbjct: 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKG 73
Query: 936 QETFARISG--YCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN 993
+ Q+ P +T+Y+++ F LR P + + R + EV EL+ L
Sbjct: 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR---VREVAELLGLT 130
Query: 994 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1053
L LS QR+R+ + +V P + MDEP S LDA+ + ++
Sbjct: 131 ELLNR-----KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKL 185
Query: 1054 V-DTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1084
G T + H D EA D + +M RG
Sbjct: 186 QRQLGVTTIYVTH----DQVEAMTMGDRIAVMNRG 216
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 83.4 bits (206), Expect = 3e-18
Identities = 52/277 (18%), Positives = 95/277 (34%), Gaps = 58/277 (20%)
Query: 164 HLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFV 223
+T ++++S +K G +LLGP GKTT L +AG +P+ G + + +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPE 71
Query: 224 PQRTAA-------YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIK 276
+ Q MTV + +AF + + V + ++
Sbjct: 72 KGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQ-------EIDQRV---- 120
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGE 336
++LGL + + +SGGQ++RV G
Sbjct: 121 -----------------------REVAELLGLTELLNRKPRE-----LSGGQRQRVALGR 152
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396
+V MDE + LD + + + + G I + E + D I
Sbjct: 153 AIVRKPQVFLMDEPLSNLD-AKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIA 211
Query: 397 LLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFL 433
+++ G + G + V + P VA F+
Sbjct: 212 VMNRGVLQQVGSPDEV--------YDKPANTFVAGFI 240
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 87.4 bits (216), Expect = 1e-19
Identities = 50/280 (17%), Positives = 98/280 (35%), Gaps = 59/280 (21%)
Query: 161 KKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMD 220
KK + L +V+ I+ G +LGP +GKTT + +AG P+ +G + ++ +
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVA 70
Query: 221 EFVPQ------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274
R + Q +T E +AF +++ R++
Sbjct: 71 SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM-------KMSKEEIRKRV-- 121
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTT 334
+ K+L + + R +SG Q++RV
Sbjct: 122 -------------------------EEVAKILDIHHVLNH-----FPRELSGAQQQRVAL 151
Query: 335 GEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDD 394
+V L +DE + LD+ L + + G ++ + + + + D
Sbjct: 152 ARALVKDPSLLLLDEPFSNLDARMR-DSARALVKEVQSRLGVTLLVVSHDPADIFAIADR 210
Query: 395 IILLSDGQIVYQG-PRELVLEFFASMGFRCPKRKGVADFL 433
+ +L G++V G P +L + P VA +
Sbjct: 211 VGVLVKGKLVQVGKPEDL---------YDNPVSIQVASLI 241
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 86.3 bits (213), Expect = 3e-19
Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 14/210 (6%)
Query: 880 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQE 937
K+V L+ V+ G ++G SGAGKTT M ++AG + G + + + K
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 938 T--FARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL 995
R G Q P +T +E++ F ++ E + ++EV ++++++ +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHV 133
Query: 996 RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1054
LS Q++R+ +A LV +PS++ +DEP S LDAR V+
Sbjct: 134 LN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 1055 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084
G T++ H P+ DIF D + ++ +G
Sbjct: 189 RLGVTLLVVSHDPA-DIFAIADRVGVLVKG 217
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 75.8 bits (186), Expect = 1e-15
Identities = 51/259 (19%), Positives = 92/259 (35%), Gaps = 55/259 (21%)
Query: 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTA-AYISQH 234
+LLGP +GK+ L +AG + P G V NG D+ P+R ++ Q
Sbjct: 22 MGRDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQD 78
Query: 235 DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQE 294
++V +A+ R R + E+
Sbjct: 79 YALFPHLSVYRNIAYGLRNVERVERDRRVREM---------------------------- 110
Query: 295 ANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGL 354
+ + D +SGG+++RV +V L +DE + +
Sbjct: 111 -------------AEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAV 157
Query: 355 DSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
D T ++ LR + ++ + E L D++ ++ +G+IV +G + E
Sbjct: 158 DLKTKGVLMEELRF-VQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLK---E 213
Query: 415 FFASMGFRCPKRKGVADFL 433
F+ K VA+FL
Sbjct: 214 LFS------AKNGEVAEFL 226
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 70.4 bits (172), Expect = 6e-14
Identities = 41/196 (20%), Positives = 85/196 (43%), Gaps = 19/196 (9%)
Query: 893 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNITISGYPKKQETFARISGYCEQN 949
L+G +GAGK+ ++++AG + G + I+ P ++ R G+ Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQD 78
Query: 950 DIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009
P +++Y ++ + V+ R + E+ E + + L + LS
Sbjct: 79 YALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRK-----PARLS 128
Query: 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPS 1068
+R+R+ +A LV P ++ +DEP S +D + ++M +R + ++ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 1069 IDIFEAFDELFLMKRG 1084
+ DE+ +M G
Sbjct: 189 -EAAMLADEVAVMLNG 203
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 48.4 bits (114), Expect = 7e-07
Identities = 23/201 (11%), Positives = 45/201 (22%), Gaps = 42/201 (20%)
Query: 898 ALMGVSGAGKTTLMDVLAG---RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP 954
+ G G GKTTL+ + ++ G+ T + K+
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKR------------------- 44
Query: 955 FVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014
+ + + + ++
Sbjct: 45 ------------TGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNV----QYFEELAIPIL 88
Query: 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 1074
+I +DE + + D VV TI +
Sbjct: 89 ERAYREAKKDRRKVIIIDEIGKMEL-FSKKFRDLVRQIMHDPNVNVVATIPIRDVHPL-- 145
Query: 1075 FDELFLMKRGGQEIYVGPLGR 1095
E+ + G I + P R
Sbjct: 146 VKEIRRLP-GAVLIELTPENR 165
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 45.0 bits (105), Expect = 1e-05
Identities = 13/104 (12%), Positives = 25/104 (24%), Gaps = 5/104 (4%)
Query: 182 LLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ--RTAAYISQHDNHIG 239
++ G P GKTTL+ + +L + E +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDV 283
+ V E+ + R K + +
Sbjct: 61 SKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVII 104
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.1 bits (105), Expect = 5e-05
Identities = 21/152 (13%), Positives = 41/152 (26%), Gaps = 22/152 (14%)
Query: 948 QNDIHSPFVTIYESLL-----------FSAWLRLSPEVDSETRKMFIDEVMELVELNPLR 996
+ + IY L +A L + E + + L +
Sbjct: 272 FDYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDME 331
Query: 997 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1056
G V+ L+ L A+ +DE + LD + +R +
Sbjct: 332 YLSGGEKTVAALA------LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNP 385
Query: 1057 GRTVVCTIHQPSIDIFEAFDELF---LMKRGG 1085
+ + +FE D L ++
Sbjct: 386 DLQFIVISLKN--TMFEKSDALVGVYRQQQEN 415
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Score = 43.9 bits (103), Expect = 8e-05
Identities = 30/148 (20%), Positives = 46/148 (31%), Gaps = 15/148 (10%)
Query: 79 QERQRLIDKLVKVTDVDNERFLLKLKN--RIDRVGIDLPKVEVRYEHLNVEAEAFLASNA 136
++++ N KN I + +D + R + L + E L +
Sbjct: 41 IKKEQPSHYKYHEKHYANAAIFADSKNQKTICQQAVDTVLAKKRVDSLQLTREQMLTNRF 100
Query: 137 LP----SFIKFYTNIFEDILNYLRIIPS--------KKRHLTILKDVSGVIKPGRLTLLL 184
I F + DI ++ + LK + I R L
Sbjct: 101 NDLLDRMDIMFGSTGSADIEEWMAGVAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFK 160
Query: 185 GPPSSGKTTLLLALAGKLD-PTLKVSGT 211
GP SGKTTL AL L V+
Sbjct: 161 GPIDSGKTTLAAALLELCGGKALNVNLP 188
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (100), Expect = 9e-05
Identities = 19/127 (14%), Positives = 40/127 (31%), Gaps = 2/127 (1%)
Query: 172 SGVIKPGRLTLLLGPPSSGKTTLLL--ALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAA 229
G I+ G +T + G +GKT + A+ +L F P+R A
Sbjct: 17 QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLA 76
Query: 230 YISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIA 289
++ ++ A + + + + A + D +Y +
Sbjct: 77 VAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYS 136
Query: 290 TEGQEAN 296
G+ +
Sbjct: 137 GRGELSA 143
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 40.0 bits (92), Expect = 5e-04
Identities = 15/137 (10%), Positives = 32/137 (23%), Gaps = 3/137 (2%)
Query: 185 GPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244
+GKTTLL L L H + + + T+
Sbjct: 9 AWSGTGKTTLLKKLIPALC---ARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIV 65
Query: 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304
+ A E+ + ++ + + + +
Sbjct: 66 ASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRPE 125
Query: 305 VLGLDVCADTMVGDEMI 321
L +D + D +
Sbjct: 126 ELVIDRHVIAVASDVPL 142
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.9 bits (89), Expect = 0.002
Identities = 19/117 (16%), Positives = 36/117 (30%), Gaps = 4/117 (3%)
Query: 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLD---PTLKVSGTVTYNGHDMDEFVPQRTA 228
G ++ G +T L G +GK+ L LA G Y + F P R
Sbjct: 28 GGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT-FRPVRLV 86
Query: 229 AYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
+ + + A + + ++ + + I D + +Y
Sbjct: 87 SIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 143
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Score = 38.9 bits (89), Expect = 0.002
Identities = 13/61 (21%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Query: 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYI 231
G ++ +T G SGKT ++ L V Q A YI
Sbjct: 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCVNL---QNPEFLFYDEEAVSKGEVAQPKAVYI 84
Query: 232 S 232
Sbjct: 85 D 85
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Score = 38.5 bits (88), Expect = 0.003
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 175 IKPGRLTLLLGPPSSGKTTLLLALAGKL 202
+ G + L+ P +GK+ L L LA ++
Sbjct: 26 MVAGTVGALVSPGGAGKSMLALQLAAQI 53
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1226 | |||
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.85 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.73 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.67 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.5 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.41 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.4 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.19 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.03 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.92 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.91 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.51 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.99 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.97 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.84 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.84 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.66 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.62 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.57 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.55 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.53 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.4 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.33 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.24 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.21 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.19 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.15 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.03 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.02 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.01 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.98 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.93 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.92 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.91 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.9 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.88 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.87 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.85 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.78 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.77 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.74 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.72 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.72 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.69 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 96.68 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.67 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.66 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.65 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.64 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.64 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.64 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.64 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.62 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.59 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.58 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.57 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.55 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.51 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.47 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.46 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 96.45 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.43 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.42 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.38 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.38 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.37 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.35 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.35 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.34 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.33 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.32 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.3 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.27 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.26 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.26 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.22 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.22 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 96.22 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.21 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.21 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.21 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.2 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.15 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.15 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 96.14 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.12 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.12 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.12 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.11 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.05 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.05 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.02 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.02 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.01 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.01 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 96.0 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.99 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.98 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.98 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.96 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.96 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.95 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.94 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.94 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.94 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.93 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.93 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.92 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.91 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.9 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.89 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.89 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.89 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.87 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.87 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.87 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.85 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.85 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.83 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.82 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.82 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.82 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 95.81 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.81 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.8 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.79 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.76 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.73 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 95.72 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.71 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 95.7 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.69 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.67 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.65 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.64 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.61 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.6 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.58 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.57 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.55 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.55 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.53 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.51 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.5 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.5 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 95.5 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.49 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.49 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.48 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.44 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.42 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.41 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.41 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.4 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.39 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.38 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.34 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.29 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.28 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.26 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.23 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.22 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.19 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.18 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.17 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.15 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.15 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.08 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 95.04 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 95.04 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.98 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.95 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.95 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 94.93 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 94.91 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.91 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 94.88 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.86 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.86 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 94.85 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 94.85 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.85 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 94.83 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.81 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.77 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.76 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.7 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.68 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.66 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.65 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 94.63 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.61 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 94.61 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.61 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.59 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 94.56 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.54 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.53 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.51 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.5 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.48 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.48 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.47 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.46 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.45 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.44 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.4 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.39 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.38 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.37 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.32 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.32 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 94.31 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.28 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.26 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 94.25 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.22 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.18 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 94.17 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.16 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.13 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.13 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 94.1 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.09 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.08 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 94.07 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.03 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.03 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 93.99 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.98 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.97 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.97 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.96 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.95 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.94 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.92 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.9 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 93.88 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.87 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 93.87 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.86 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 93.82 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 93.81 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 93.79 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.74 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 93.74 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.72 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.71 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.71 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.69 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.68 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.66 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 93.65 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.63 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.62 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.59 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.58 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.57 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 93.57 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.55 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 93.53 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 93.52 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 93.52 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.49 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.45 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.4 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.38 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.35 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 93.33 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.29 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.29 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 93.26 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.24 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.24 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.23 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.2 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 93.19 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 93.19 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 93.16 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.16 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.08 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 93.07 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 93.05 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.05 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 93.05 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.02 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 92.88 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.86 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.85 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.85 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 92.83 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.8 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 92.77 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 92.73 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.73 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 92.72 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.72 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 92.69 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 92.67 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 92.67 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.61 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 92.59 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.58 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 92.58 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 92.54 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.51 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 92.51 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 92.46 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 92.44 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 92.42 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 92.41 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 92.39 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 92.38 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 92.38 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 92.37 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 92.37 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 92.35 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 92.33 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 92.31 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.3 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 92.28 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.26 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.26 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.23 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 92.2 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 92.19 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 92.19 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 92.16 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 92.15 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.12 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 92.09 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 92.08 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.07 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 92.04 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 92.0 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 92.0 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.96 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 91.85 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 91.84 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.81 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 91.78 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 91.77 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 91.77 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 91.73 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 91.73 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 91.64 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 91.61 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.52 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 91.5 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 91.5 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 91.46 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 91.44 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.43 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 91.29 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 91.26 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 91.18 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 91.17 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 91.17 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 91.16 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 91.14 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 91.11 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 91.1 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 91.08 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 90.98 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 90.93 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 90.89 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 90.89 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 90.88 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 90.82 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 90.81 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 90.78 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 90.74 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 90.7 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 90.69 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 90.67 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 90.6 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 90.56 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 90.55 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.53 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 90.48 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 90.46 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 90.32 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 90.25 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.25 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 90.25 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.2 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.19 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 90.15 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 90.11 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 90.1 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 90.01 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 89.89 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 89.79 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 89.77 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 89.66 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 89.61 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 89.57 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 89.52 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 89.44 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 89.41 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 89.38 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 89.37 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 89.25 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 89.06 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 88.99 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 88.94 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 88.75 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 88.45 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 88.44 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 88.37 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 88.27 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 88.17 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 88.15 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 87.89 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.55 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 87.53 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 87.19 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 87.1 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 87.0 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 86.89 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 86.89 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 86.69 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 86.61 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 86.61 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 86.41 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 86.28 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 86.17 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 85.98 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 85.83 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 85.49 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.1 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 85.01 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 84.42 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 84.22 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 83.66 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 83.59 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 83.55 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 83.53 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 83.06 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 82.85 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 82.85 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 82.51 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 82.28 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 82.24 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 80.57 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 80.15 |
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=335.10 Aligned_cols=214 Identities=26% Similarity=0.344 Sum_probs=175.4
Q ss_pred EEEEECEEEEEECCCHHHHCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 25781305587255012441534685488223523336980999982699967789952508977863798999959348
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++.+|++.++. ...+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 3 ~i~v~nl~k~yg-------------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i 67 (240)
T d1g2912 3 GVRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLV 67 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred CEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEE
T ss_conf 189986999989-------------9999856066886998999999999809999999964878--8989899999980
Q ss_pred CHH-------HHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 833-------2200166850489899999999999998873069999988999999999998399753233247999887
Q 000913 935 KQE-------TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSG 1007 (1226)
Q Consensus 935 ~~~-------~~~~~~gyv~q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~ 1007 (1226)
... ..++.+|||+|++.++|.+||+|++.|...++ ..+.++.+++++++++.++|.+..+..+ ..
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~p-----~~ 139 (240)
T d1g2912 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKP-----RE 139 (240)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GG
T ss_pred CCCCHHHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCH-----HH
T ss_conf 356644424532255120022122231011667633068772---9998999999999998759966762993-----34
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCE
Q ss_conf 8988999999999996099878992999999999999999999998739-997999925975899974286989926949
Q 000913 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1226)
Q Consensus 1008 LSgGqrkrl~Ia~~L~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~Hqps~~i~~~fD~ll~l~~gg~ 1086 (1226)
||||||||++|||+|+.+|++|+|||||+|||+.++..+++.++++.++ |.|||+++|++. ++...+|++++|.+ |+
T Consensus 140 LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~-G~ 217 (240)
T d1g2912 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GV 217 (240)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CE
T ss_conf 99999999999999826998898258876569899989999999998636988999959999-99996999999989-99
Q ss_pred EEEECCC
Q ss_conf 9996799
Q 000913 1087 EIYVGPL 1093 (1226)
Q Consensus 1087 ~vy~g~~ 1093 (1226)
++..|++
T Consensus 218 iv~~G~~ 224 (240)
T d1g2912 218 LQQVGSP 224 (240)
T ss_dssp EEEEECH
T ss_pred EEEECCH
T ss_conf 9998599
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=338.34 Aligned_cols=214 Identities=22% Similarity=0.353 Sum_probs=161.3
Q ss_pred EEEEECEEEEEECCCHHHHCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 25781305587255012441534685488223523336980999982699967789952508977863798999959348
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++.+|++.++. +..+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 6 ~I~v~nlsk~yg-------------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~--p~sG~I~i~g~~i 70 (239)
T d1v43a3 6 EVKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDV 70 (239)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 499987999999-------------9999813067887998999999999829999999975899--9878799916413
Q ss_pred CH-HHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 83-32200166850489899999999999998873069999988999999999998399753233247999887898899
Q 000913 935 KQ-ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQR 1013 (1226)
Q Consensus 935 ~~-~~~~~~~gyv~q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGqr 1013 (1226)
.. ...+|.+|||+|++.+++.+||+|++.|.+.++ ..+.++.+++++++++.++|.++.+..+ ..||||||
T Consensus 71 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~ 142 (239)
T d1v43a3 71 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQR 142 (239)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCH
T ss_pred CCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHH
T ss_conf 547700015899800335342220999999999873---9999999999999998759855660995-----46999998
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECC
Q ss_conf 9999999996099878992999999999999999999998739-997999925975899974286989926949999679
Q 000913 1014 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1226)
Q Consensus 1014 krl~Ia~~L~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~Hqps~~i~~~fD~ll~l~~gg~~vy~g~ 1092 (1226)
||++||++|+.+|+||+|||||+|||+.++..+++.++++.++ |.|||+++|++. ++.+.+|++++|.+ |+++..|+
T Consensus 143 QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~ 220 (239)
T d1v43a3 143 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGS 220 (239)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 89999766404998243068866689899989999999998731980799948999-99986999999989-99999859
Q ss_pred C
Q ss_conf 9
Q 000913 1093 L 1093 (1226)
Q Consensus 1093 ~ 1093 (1226)
+
T Consensus 221 ~ 221 (239)
T d1v43a3 221 P 221 (239)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=338.89 Aligned_cols=213 Identities=25% Similarity=0.371 Sum_probs=135.0
Q ss_pred EEEECEEEEEECCCHHHHCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 57813055872550124415346854882235233369809999826999677899525089778637989999593488
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|+++++. ...+|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 Iev~nv~k~yg-------------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~ 65 (232)
T d2awna2 1 VQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMN 65 (232)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCT
T ss_pred CEEEEEEEEEC-------------CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEECC
T ss_conf 99999999989-------------9999811177886998999998999829999999965878--88888999999778
Q ss_pred HH-HHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 33-22001668504898999999999999988730699999889999999999983997532332479998878988999
Q 000913 936 QE-TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1226)
Q Consensus 936 ~~-~~~~~~gyv~q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGqrk 1014 (1226)
.. ..+|.+|||+|++.+++.+||+|++.|...++. .+.++.+++++++++.++|.+..+..+ ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~-----~~LSGGqkQ 137 (232)
T d2awna2 66 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQ 137 (232)
T ss_dssp TSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC------------------------
T ss_pred CCCHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHCCH-----HHCCHHHHH
T ss_conf 886444322234334202643337889789998759---988999999999997578865664896-----569999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 99999999609987899299999999999999999999873-99979999259758999742869899269499996799
Q 000913 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1015 rl~Ia~~L~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~t~Hqps~~i~~~fD~ll~l~~gg~~vy~g~~ 1093 (1226)
|++||++|+.+|++|+|||||+|||+.++..+++.++++.+ .|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 138 RvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~~ 215 (232)
T d2awna2 138 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKP 215 (232)
T ss_dssp --CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEEECH
T ss_conf 9999999703998899758887889889989999999998742987999948999-99996999999979-999998089
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=336.52 Aligned_cols=207 Identities=24% Similarity=0.348 Sum_probs=182.5
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCH
Q ss_conf 247630169995784999986999928999999956989999722299996824899776-6229996579998999999
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP-QRTAAYISQHDNHIGEMTV 243 (1226)
Q Consensus 165 ~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~V~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1226)
.++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.+||.++.+..+ ++.++||+|++.+++.+||
T Consensus 13 ~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv 89 (232)
T d2awna2 13 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 89 (232)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEEECSSCCC------
T ss_pred EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHCEEEEECCCCCCCCCHHH
T ss_conf 99981117788699899999899982999999996587888---888999999778886444322234334202643337
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99999975711787225676999999886199999886799999752223367999999999099432343334644677
Q 000913 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1226)
Q Consensus 244 rEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~vG~~~~~g 323 (1226)
+||+.|+.++++... ++...+++.+++.++|++..|..+. .
T Consensus 90 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~l~~~~~~~~~-----~ 130 (232)
T d2awna2 90 AENMSFGLKLAGAKK----------------------------------EVINQRVNQVAEVLQLAHLLDRKPK-----A 130 (232)
T ss_dssp -------------------------------------------------CHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHCCCCH----------------------------------HHHHHHHHHHHHHCCCHHHHHCCHH-----H
T ss_conf 889789998759988----------------------------------9999999999975788656648965-----6
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCEEEECCCEE
Q ss_conf 88667668999999724985343225987999998999999999998804974899995493469966290999749839
Q 000913 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1226)
Q Consensus 324 lSGGqrkRvsia~~l~~~~~illlDEptsgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~~fD~i~lL~~G~i 403 (1226)
|||||||||+||++|+.+|++++|||||+|||+.++.++++.|+++.+..+.|+++ ++|...++..++|+|++|.+|++
T Consensus 131 LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~-vTHd~~~a~~~~dri~vm~~G~i 209 (232)
T d2awna2 131 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY-VTHDQVEAMTLADKIVVLDAGRV 209 (232)
T ss_dssp ---------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEE-EESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHCCEEEEEECCEE
T ss_conf 99999999999999703998899758887889889989999999998742987999-94899999996999999979999
Q ss_pred EEECCHHHHHH
Q ss_conf 99639667999
Q 000913 404 VYQGPRELVLE 414 (1226)
Q Consensus 404 vy~G~~~~~~~ 414 (1226)
+++|+.+++.+
T Consensus 210 v~~G~~~el~~ 220 (232)
T d2awna2 210 AQVGKPLELYH 220 (232)
T ss_dssp EEEECHHHHHH
T ss_pred EEEECHHHHHH
T ss_conf 99808999973
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=330.99 Aligned_cols=219 Identities=23% Similarity=0.376 Sum_probs=187.7
Q ss_pred EEEECEEEEEECCCHHHHCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 57813055872550124415346854882235233369809999826999677899525089778637989999593488
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++.+|++++++... ....+|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 I~i~nlsk~y~~~~---------~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGE---------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEETT---------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEECCCC---------EEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCC--CCCCEEEECCEECC
T ss_conf 89990799948998---------20898713377884997999988999982165575068877--77662699999857
Q ss_pred H---HH---H-CCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCC
Q ss_conf 3---32---2-0016685048989999999999999887306999998899999999999839975-3233247999887
Q 000913 936 Q---ET---F-ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-LRQSLVGLPGVSG 1007 (1226)
Q Consensus 936 ~---~~---~-~~~~gyv~q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-~~~~~vg~~~~~~ 1007 (1226)
. .. + ++.+|||+|++.+.|.+||+|++.++...+.....+.+++.+++.+.++.++|.+ ..+..+ ..
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----~~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQ 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GG
T ss_pred CCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCH-----HH
T ss_conf 6885551231255577880412417686688877578887224789999999999998876242345534880-----23
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCE
Q ss_conf 8988999999999996099878992999999999999999999998739-997999925975899974286989926949
Q 000913 1008 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1086 (1226)
Q Consensus 1008 LSgGqrkrl~Ia~~L~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~Hqps~~i~~~fD~ll~l~~gg~ 1086 (1226)
||||||||++|||||+.+|++|+|||||++||+.++..|+++++++.++ |.|||+++|++. +.+.+|++++|.+ |+
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~--~a~~~drv~~m~~-G~ 222 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHH--HHHHCCEEEEEEC-CE
T ss_conf 89999999998756522788899468765469899999999999999843999999878889--9986998999989-99
Q ss_pred EEEECCC
Q ss_conf 9996799
Q 000913 1087 EIYVGPL 1093 (1226)
Q Consensus 1087 ~vy~g~~ 1093 (1226)
++..|++
T Consensus 223 Iv~~g~~ 229 (230)
T d1l2ta_ 223 VEREEKL 229 (230)
T ss_dssp EEEEEEC
T ss_pred EEEECCC
T ss_conf 9995257
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=335.61 Aligned_cols=216 Identities=27% Similarity=0.384 Sum_probs=176.3
Q ss_pred EEEEECEEEEEECCCHHHHCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 25781305587255012441534685488223523336980999982699967789952508977863798999959348
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++.+|++++++. +...+|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 3 ~i~v~nlsk~y~~-----------g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~--p~~G~I~~~g~~i 69 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-----------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLV 69 (242)
T ss_dssp CEEEEEEEEEEGG-----------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEEEEEEECC-----------CCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEE
T ss_conf 8999757999889-----------99899804078987998999998999809999999975868--8874599999995
Q ss_pred CH------HHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 83------322001668504898999999999999988730699999889999999999983997532332479998878
Q 000913 935 KQ------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGL 1008 (1226)
Q Consensus 935 ~~------~~~~~~~gyv~q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~L 1008 (1226)
.. ...+|.+|||+|+..++|.+||+|++.|....+ ..+.++.+++++++++.++|.+..+..+ ..|
T Consensus 70 ~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----~~L 141 (242)
T d1oxxk2 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----REL 141 (242)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred ECCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCHHHHHHCCH-----HHC
T ss_conf 13731115312045147730433466665777766556761---3799999999999986659176664895-----459
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCEE
Q ss_conf 988999999999996099878992999999999999999999998739-9979999259758999742869899269499
Q 000913 1009 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQE 1087 (1226)
Q Consensus 1009 SgGqrkrl~Ia~~L~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~Hqps~~i~~~fD~ll~l~~gg~~ 1087 (1226)
|||||||++|||+|+.+|++|+|||||+|||+.++..+++.++++.++ |.|||+++|++. ++.+.+|++++|.+ |++
T Consensus 142 SGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~-G~i 219 (242)
T d1oxxk2 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKL 219 (242)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEE
T ss_conf 9999858998757760466145447866799899889989999998635987999979999-99996999999989-999
Q ss_pred EEECCC
Q ss_conf 996799
Q 000913 1088 IYVGPL 1093 (1226)
Q Consensus 1088 vy~g~~ 1093 (1226)
+..|++
T Consensus 220 v~~g~~ 225 (242)
T d1oxxk2 220 VQVGKP 225 (242)
T ss_dssp EEEECH
T ss_pred EEECCH
T ss_conf 998699
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=332.73 Aligned_cols=221 Identities=25% Similarity=0.361 Sum_probs=191.8
Q ss_pred CEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHH
Q ss_conf 16999104999998258776786368888999999767651588765524763016999578499998699992899999
Q 000913 117 VEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLL 196 (1226)
Q Consensus 117 ~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~ 196 (1226)
.+|+.+||+.++. ...+|+|||+.+++|++++|+||||||||||++
T Consensus 5 ~~I~v~nlsk~yg----------------------------------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~ 50 (239)
T d1v43a3 5 VEVKLENLTKRFG----------------------------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLR 50 (239)
T ss_dssp CCEEEEEEEEEET----------------------------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHH
T ss_pred CEEEEEEEEEEEC----------------------------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHH
T ss_conf 7499987999999----------------------------------999981306788799899999999982999999
Q ss_pred HHHCCCCCCCCCEEEEEECCCCCCCCCCC-CEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99569899997222999968248997766-22999657999899999999999975711787225676999999886199
Q 000913 197 ALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGI 275 (1226)
Q Consensus 197 ~LaG~~~~~~~~~G~V~~nG~~~~~~~~~-~~~~yv~Q~d~~~~~lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (1226)
+|+|.++|+ +|+|.+||.++....+. +.++||+|++.+++.+||+||+.|.+++++...
T Consensus 51 ~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~----------------- 110 (239)
T d1v43a3 51 MIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPK----------------- 110 (239)
T ss_dssp HHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCH-----------------
T ss_pred HHHCCCCCC---CCEEEECCEECCCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHCCCCH-----------------
T ss_conf 997589998---787999164135477000158998003353422209999999998739999-----------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCC
Q ss_conf 99988679999975222336799999999909943234333464467788667668999999724985343225987999
Q 000913 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLD 355 (1226)
Q Consensus 276 ~p~~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~vG~~~~~glSGGqrkRvsia~~l~~~~~illlDEptsgLD 355 (1226)
.+...+++++++.+||++..|..+ ..|||||||||+||++|+.+|++++|||||+|||
T Consensus 111 -----------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD 168 (239)
T d1v43a3 111 -----------------DEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 168 (239)
T ss_dssp -----------------HHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred -----------------HHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCC
T ss_conf -----------------999999999998759855660995-----4699999889999766404998243068866689
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 99899999999999880497489999549346996629099974983999639667999
Q 000913 356 SSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 356 s~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~~fD~i~lL~~G~ivy~G~~~~~~~ 414 (1226)
+.++..+++.++++....+.|+++ +.|...++..++|+|++|.+|+++..|+.+++..
T Consensus 169 ~~~~~~i~~ll~~l~~~~g~tii~-vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 226 (239)
T d1v43a3 169 AKLRVAMRAEIKKLQQKLKVTTIY-VTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEE-EESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 899989999999998731980799-9489999998699999998999999859999986
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=331.60 Aligned_cols=218 Identities=22% Similarity=0.289 Sum_probs=188.0
Q ss_pred EEEECEEEEEECCCHHHHCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 57813055872550124415346854882235233369809999826999677899525089778637989999593488
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++|++.+++.. ....++|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 i~v~nlsk~y~~~---------~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 2 IKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELT 70 (240)
T ss_dssp EEEEEEEEEEECS---------SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEEC
T ss_pred EEEEEEEEEECCC---------CEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCC--CCCCCEEECCEEEE
T ss_conf 7998279996999---------814898615057886997999989998988899998758863--66773288676852
Q ss_pred H---H---HHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3---3---220016685048989999999999999887306999998899999999999839975323324799988789
Q 000913 936 Q---E---TFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLS 1009 (1226)
Q Consensus 936 ~---~---~~~~~~gyv~q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LS 1009 (1226)
. . .+++.+|||+|+..+++.+||+|++.|...++. .+.++.++++.++++.++|.+..+..+ ..||
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~---~~~~~~~~~v~~~L~~vgL~~~~~~~~-----~~LS 142 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLS 142 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTT---CCTTHHHHHHHHHHHHHSTTTTTSSCB-----SCCC
T ss_pred ECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCCHHHHCCH-----HHCC
T ss_conf 08755511554166430225222799649999999999849---998999999999999769903554894-----3499
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCEEE
Q ss_conf 88999999999996099878992999999999999999999998739-99799992597589997428698992694999
Q 000913 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1088 (1226)
Q Consensus 1010 gGqrkrl~Ia~~L~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~Hqps~~i~~~fD~ll~l~~gg~~v 1088 (1226)
||||||++|||+|+.+|++|+|||||+|||+.++..+++.++++.++ |.|||+++|++. ++...+|++++|.+ |+++
T Consensus 143 GG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~-G~iv 220 (240)
T d3dhwc1 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CEEE
T ss_conf 999989998640105898687446556589888567999999998646978999838999-99986999999979-9999
Q ss_pred EECCCC
Q ss_conf 967998
Q 000913 1089 YVGPLG 1094 (1226)
Q Consensus 1089 y~g~~~ 1094 (1226)
+.|++.
T Consensus 221 ~~G~~~ 226 (240)
T d3dhwc1 221 EQDTVS 226 (240)
T ss_dssp EEEETT
T ss_pred EECCHH
T ss_conf 987999
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=329.15 Aligned_cols=220 Identities=25% Similarity=0.322 Sum_probs=189.5
Q ss_pred EEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHH
Q ss_conf 69991049999982587767863688889999997676515887655247630169995784999986999928999999
Q 000913 118 EVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLA 197 (1226)
Q Consensus 118 ~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~ 197 (1226)
.++.+||+..+. ...+|+|||+.+++|++++|+||||||||||+++
T Consensus 3 ~i~v~nl~k~yg----------------------------------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~ 48 (240)
T d1g2912 3 GVRLVDVWKVFG----------------------------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRM 48 (240)
T ss_dssp EEEEEEEEEEET----------------------------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHH
T ss_pred CEEEEEEEEEEC----------------------------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHH
T ss_conf 189986999989----------------------------------9999856066886998999999999809999999
Q ss_pred HHCCCCCCCCCEEEEEECCCCCCCCC-------CCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 95698999972229999682489977-------66229996579998999999999999757117872256769999998
Q 000913 198 LAGKLDPTLKVSGTVTYNGHDMDEFV-------PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARRE 270 (1226)
Q Consensus 198 LaG~~~~~~~~~G~V~~nG~~~~~~~-------~~~~~~yv~Q~d~~~~~lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~ 270 (1226)
|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++.+||+||+.|+.+.++...
T Consensus 49 i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~------------ 113 (240)
T d1g2912 49 IAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPR------------ 113 (240)
T ss_dssp HHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCH------------
T ss_pred HHCCCCCC---CCEEEECCEEECCCCHHHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCH------------
T ss_conf 96487889---898999999803566444245322551200221222310116676330687729998------------
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECC
Q ss_conf 86199999886799999752223367999999999099432343334644677886676689999997249853432259
Q 000913 271 KAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEI 350 (1226)
Q Consensus 271 ~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~vG~~~~~glSGGqrkRvsia~~l~~~~~illlDEp 350 (1226)
.+...+++++++.+||++..|..++ .|||||||||+||++|+.+|++++||||
T Consensus 114 ----------------------~e~~~~v~~~l~~~~l~~~~~~~p~-----~LSGGqkQRv~IAraL~~~P~iLllDEP 166 (240)
T d1g2912 114 ----------------------QEIDQRVREVAELLGLTELLNRKPR-----ELSGGQRQRVALGRAIVRKPQVFLMDEP 166 (240)
T ss_dssp ----------------------HHHHHHHHHHHHHHTCGGGTTCCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEECT
T ss_pred ----------------------HHHHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf ----------------------9999999999987599667629933-----4999999999999998269988982588
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 8799999899999999999880497489999549346996629099974983999639667999
Q 000913 351 STGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 351 tsgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~~fD~i~lL~~G~ivy~G~~~~~~~ 414 (1226)
|+|||+.+...+++.|+++.+..+.|+ +.++|...++..++|+|++|.+|++++.|+.+++..
T Consensus 167 t~~LD~~~~~~i~~~l~~l~~~~g~tv-i~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 167 LSNLDAKLRVRMRAELKKLQRQLGVTT-IYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHTCEE-EEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEE-EEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 765698999899999999986369889-999599999999699999998999999859999982
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=328.81 Aligned_cols=222 Identities=19% Similarity=0.250 Sum_probs=189.4
Q ss_pred EEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHH
Q ss_conf 69991049999982587767863688889999997676515887655247630169995784999986999928999999
Q 000913 118 EVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLA 197 (1226)
Q Consensus 118 ~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~ 197 (1226)
.+..+||+..+.. ....+|+|||+.+++|++++|+||||||||||+++
T Consensus 3 ~i~v~nlsk~y~~--------------------------------g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~ 50 (242)
T d1oxxk2 3 RIIVKNVSKVFKK--------------------------------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRI 50 (242)
T ss_dssp CEEEEEEEEEEGG--------------------------------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHH
T ss_pred EEEEEEEEEEECC--------------------------------CCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHH
T ss_conf 8999757999889--------------------------------99899804078987998999998999809999999
Q ss_pred HHCCCCCCCCCEEEEEECCCCCCCCC------CCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 95698999972229999682489977------662299965799989999999999997571178722567699999988
Q 000913 198 LAGKLDPTLKVSGTVTYNGHDMDEFV------PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREK 271 (1226)
Q Consensus 198 LaG~~~~~~~~~G~V~~nG~~~~~~~------~~~~~~yv~Q~d~~~~~lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~~ 271 (1226)
|+|..+|+ +|+|.++|.++.... .++.++||+|+..++|.+||+||+.|+.+..+...
T Consensus 51 i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~------------- 114 (242)
T d1oxxk2 51 IAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSK------------- 114 (242)
T ss_dssp HHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCH-------------
T ss_pred HHCCCCCC---CCEEEECCEEEECCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCH-------------
T ss_conf 97586888---74599999995137311153120451477304334666657777665567613799-------------
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCC
Q ss_conf 61999998867999997522233679999999990994323433346446778866766899999972498534322598
Q 000913 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIS 351 (1226)
Q Consensus 272 ~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~vG~~~~~glSGGqrkRvsia~~l~~~~~illlDEpt 351 (1226)
.+...+++.+++.+||++.+|...+ .|||||||||+||++|+.+|+++++||||
T Consensus 115 ---------------------~~~~~~v~~~l~~~gL~~~~~~~p~-----~LSGGqkQRvaiARaL~~~P~llllDEPt 168 (242)
T d1oxxk2 115 ---------------------EEIRKRVEEVAKILDIHHVLNHFPR-----ELSGAQQQRVALARALVKDPSLLLLDEPF 168 (242)
T ss_dssp ---------------------HHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred ---------------------HHHHHHHHHHHHHCCHHHHHHCCHH-----HCCHHHHHHHHHHHHHHHCCCCEEECCCC
T ss_conf ---------------------9999999999866591766648954-----59999985899875776046614544786
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 799999899999999999880497489999549346996629099974983999639667999
Q 000913 352 TGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 352 sgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~~fD~i~lL~~G~ivy~G~~~~~~~ 414 (1226)
+|||+.++.++++.++++....+.|+++ ++|...++..++|+|++|.+|+++..|+.+++..
T Consensus 169 ~~LD~~~~~~i~~~i~~l~~~~g~tvi~-vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 169 SNLDARMRDSARALVKEVQSRLGVTLLV-VSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp TTSCGGGHHHHHHHHHHHHHHHCCEEEE-EESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEE-EECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 6799899889989999998635987999-9799999999699999998999999869999986
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=326.63 Aligned_cols=196 Identities=22% Similarity=0.293 Sum_probs=104.8
Q ss_pred EEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCH-HHHCCEEEEEECCCCCCCCCCHHHH
Q ss_conf 822352333698099998269996778995250897786379899995934883-3220016685048989999999999
Q 000913 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTIYES 961 (1226)
Q Consensus 883 iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~q~d~~~~~lTv~E~ 961 (1226)
+|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+... ...++.+|||+|+..++|.+||+|+
T Consensus 15 aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~--p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~en 92 (229)
T d3d31a2 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKN 92 (229)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHH
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECCCCCHHHHCCEEECCCCCCCCCCCHHHH
T ss_conf 8843378987998999998999829999999964768--88788999567346521657405615121111746657788
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHH
Q ss_conf 99988730699999889999999999983997532332479998878988999999999996099878992999999999
Q 000913 962 LLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1041 (1226)
Q Consensus 962 l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGqrkrl~Ia~~L~~~P~iL~LDEPTsgLD~~ 1041 (1226)
+.|+..++... . +++++++++.+++.+..+..+ ..||||||||++|||+|+.+|++|+|||||+|||+.
T Consensus 93 l~~~~~~~~~~---~---~~~~~~~l~~~~l~~~~~~~~-----~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~ 161 (229)
T d3d31a2 93 LEFGMRMKKIK---D---PKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161 (229)
T ss_dssp HHHHHHHHCCC---C---HHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHH
T ss_pred HHHHHHHCCCC---H---HHHHHHHHHHHCCHHHHHCCH-----HHCCHHHHCCHHHHHHHHCCCCCEEECCCCCCCCHH
T ss_conf 88877640553---8---999999999825655575895-----547999840140304344367714434787679989
Q ss_pred HHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 99999999999873-99979999259758999742869899269499996799
Q 000913 1042 AAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1042 ~~~~i~~~l~~l~~-~g~tvi~t~Hqps~~i~~~fD~ll~l~~gg~~vy~g~~ 1093 (1226)
++..+++.++++.+ .|.|||+++|++. ++.+.+|++++|.+ |+++..|+.
T Consensus 162 ~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~-G~iv~~g~~ 212 (229)
T d3d31a2 162 TQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (229)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 9999999999998647968999749999-99996999999979-999998699
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=325.52 Aligned_cols=222 Identities=23% Similarity=0.322 Sum_probs=190.3
Q ss_pred EEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHH
Q ss_conf 99910499999825877678636888899999976765158876552476301699957849999869999289999999
Q 000913 119 VRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL 198 (1226)
Q Consensus 119 v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~L 198 (1226)
++++||+..+.. ++....+|+|||+.+++|++++|+||||||||||+++|
T Consensus 2 i~v~nlsk~y~~------------------------------~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i 51 (240)
T d3dhwc1 2 IKLSNITKVFHQ------------------------------GTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV 51 (240)
T ss_dssp EEEEEEEEEEEC------------------------------SSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHH
T ss_pred EEEEEEEEEECC------------------------------CCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHH
T ss_conf 799827999699------------------------------98148986150578869979999899989888999987
Q ss_pred HCCCCCCCCCEEEEEECCCCCCCCCC------CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 56989999722299996824899776------622999657999899999999999975711787225676999999886
Q 000913 199 AGKLDPTLKVSGTVTYNGHDMDEFVP------QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272 (1226)
Q Consensus 199 aG~~~~~~~~~G~V~~nG~~~~~~~~------~~~~~yv~Q~d~~~~~lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~ 272 (1226)
+|..+|+ +|+|.++|.++..... ++.++||+|+..+++.+||+||+.|+.+..+...
T Consensus 52 ~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~-------------- 114 (240)
T d3dhwc1 52 NLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPK-------------- 114 (240)
T ss_dssp TTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCT--------------
T ss_pred CCCCCCC---CCCEEECCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCH--------------
T ss_conf 5886366---77328867685208755511554166430225222799649999999999849998--------------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCC
Q ss_conf 19999988679999975222336799999999909943234333464467788667668999999724985343225987
Q 000913 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIST 352 (1226)
Q Consensus 273 ~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~vG~~~~~glSGGqrkRvsia~~l~~~~~illlDEpts 352 (1226)
++...+++.+|+.+||++.+|...+ .|||||||||+||++|+.+|+++++||||+
T Consensus 115 --------------------~~~~~~v~~~L~~vgL~~~~~~~~~-----~LSGG~~QRvaiAraL~~~P~lLllDEPt~ 169 (240)
T d3dhwc1 115 --------------------DEVKRRVTELLSLVGLGDKHDSYPS-----NLSGGQKQRVAIARALASNPKVLLCDEATS 169 (240)
T ss_dssp --------------------THHHHHHHHHHHHHSTTTTTSSCBS-----CCCHHHHHHHHHHHHHHTCCSEEEEESGGG
T ss_pred --------------------HHHHHHHHHHHHHCCCCHHHHCCHH-----HCCHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf --------------------9999999999997699035548943-----499999989998640105898687446556
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCEEEECCCEEEEECCHHHHH
Q ss_conf 9999989999999999988049748999954934699662909997498399963966799
Q 000913 353 GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 353 gLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~~fD~i~lL~~G~ivy~G~~~~~~ 413 (1226)
|||+.++..|++.|+++.+..+.|+++ +.|...++..++|+|++|.+|++++.|+.+++.
T Consensus 170 ~LD~~~~~~i~~~l~~l~~~~g~tvi~-vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 170 ALDPATTRSILELLKDINRRLGLTILL-ITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 229 (240)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHCCEEEE-EBSCHHHHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEE-ECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 589888567999999998646978999-838999999869999999799999987999997
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=322.97 Aligned_cols=214 Identities=23% Similarity=0.320 Sum_probs=183.5
Q ss_pred EEEEECEEEEEECCCHHHHCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 25781305587255012441534685488223523336980999982699967789952508977863798999959348
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.+..+|++.++ +++.+|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 2 aI~v~nl~k~y-------------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~--p~~G~i~i~G~~i 66 (238)
T d1vpla_ 2 AVVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNV 66 (238)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred CEEEEEEEEEE-------------CCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 78999589999-------------99999806256884897999999999999999999966988--7888799986724
Q ss_pred CH--HHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 83--3220016685048989999999999999887306999998899999999999839975323324799988789889
Q 000913 935 KQ--ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQ 1012 (1226)
Q Consensus 935 ~~--~~~~~~~gyv~q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGq 1012 (1226)
.. ...++.+|||+|.+.+++.+|+.|++.|.+.++. .+..+.++.++++++.++|.+..+..+ +.|||||
T Consensus 67 ~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lSgG~ 138 (238)
T d1vpla_ 67 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGM 138 (238)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHH
T ss_pred CCCHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHHHH-----HHCCHHH
T ss_conf 46839887218675001546878667788898998617---998999999999998679788885045-----3379989
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECC
Q ss_conf 99999999996099878992999999999999999999998739997999925975899974286989926949999679
Q 000913 1013 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1226)
Q Consensus 1013 rkrl~Ia~~L~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~ll~l~~gg~~vy~g~ 1092 (1226)
|||++||++|+.+|++|+|||||+|||+.++..++++++++++.|+|||+++|++. ++...+|++++|.+ |++++.|+
T Consensus 139 ~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~~-G~iv~~g~ 216 (238)
T d1vpla_ 139 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 216 (238)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 89999999986599988733798897989999999999999965998999959899-99996999999989-99999928
Q ss_pred C
Q ss_conf 9
Q 000913 1093 L 1093 (1226)
Q Consensus 1093 ~ 1093 (1226)
+
T Consensus 217 ~ 217 (238)
T d1vpla_ 217 V 217 (238)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=326.83 Aligned_cols=201 Identities=24% Similarity=0.351 Sum_probs=178.5
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC-CEEEEECCCCCCCCCCCHHH
Q ss_conf 76301699957849999869999289999999569899997222999968248997766-22999657999899999999
Q 000913 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-RTAAYISQHDNHIGEMTVRE 245 (1226)
Q Consensus 167 iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~V~~nG~~~~~~~~~-~~~~yv~Q~d~~~~~lTVrE 245 (1226)
+|+|||+.+++|++++|+||||||||||+++|+|..+|+ +|+|.++|.++.+..+. +.++||+|+..+++.+||+|
T Consensus 15 aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~e 91 (229)
T d3d31a2 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (229)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHHCCEEECCCCCCCCCCCHHH
T ss_conf 884337898799899999899982999999996476888---78899956734652165740561512111174665778
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99997571178722567699999988619999988679999975222336799999999909943234333464467788
Q 000913 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1226)
Q Consensus 246 tl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~vG~~~~~glS 325 (1226)
|+.|+.+.++... ..+++.+++.++|.+..|..++ .||
T Consensus 92 nl~~~~~~~~~~~-------------------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LS 129 (229)
T d3d31a2 92 NLEFGMRMKKIKD-------------------------------------PKRVLDTARDLKIEHLLDRNPL-----TLS 129 (229)
T ss_dssp HHHHHHHHHCCCC-------------------------------------HHHHHHHHHHTTCTTTTTSCGG-----GSC
T ss_pred HHHHHHHHCCCCH-------------------------------------HHHHHHHHHHHCCHHHHHCCHH-----HCC
T ss_conf 8888776405538-------------------------------------9999999998256555758955-----479
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCEEEECCCEEEE
Q ss_conf 66766899999972498534322598799999899999999999880497489999549346996629099974983999
Q 000913 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1226)
Q Consensus 326 GGqrkRvsia~~l~~~~~illlDEptsgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~~fD~i~lL~~G~ivy 405 (1226)
|||||||+||++|+.+|++++|||||+|||+.+..++.+.++++....+.|+ +.+.|...++..++|+|++|.+|++++
T Consensus 130 GG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~ti-i~vtHd~~~~~~~~drv~vm~~G~iv~ 208 (229)
T d3d31a2 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTV-LHITHDQTEARIMADRIAVVMDGKLIQ 208 (229)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEE-EEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred HHHHCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEE-EEECCCHHHHHHHCCEEEEEECCEEEE
T ss_conf 9984014030434436771443478767998999999999999986479689-997499999999699999997999999
Q ss_pred ECCHHHHH
Q ss_conf 63966799
Q 000913 406 QGPRELVL 413 (1226)
Q Consensus 406 ~G~~~~~~ 413 (1226)
.|+.+++.
T Consensus 209 ~g~~~el~ 216 (229)
T d3d31a2 209 VGKPEEIF 216 (229)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
T ss_conf 86999998
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=326.26 Aligned_cols=223 Identities=23% Similarity=0.357 Sum_probs=179.5
Q ss_pred EEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHH
Q ss_conf 69991049999982587767863688889999997676515887655247630169995784999986999928999999
Q 000913 118 EVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLA 197 (1226)
Q Consensus 118 ~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~ 197 (1226)
||+|+||++.|.. ....+|+|||+.+++|+.++|+||||||||||+++
T Consensus 1 eI~~~nvsf~Y~~--------------------------------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~l 48 (241)
T d2pmka1 1 DITFRNIRFRYKP--------------------------------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKL 48 (241)
T ss_dssp EEEEEEEEEESST--------------------------------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHH
T ss_pred CEEEEEEEEEECC--------------------------------CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHH
T ss_conf 9299999999089--------------------------------99603742489984999999999999989999999
Q ss_pred HHCCCCCCCCCEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 956989999722299996824899776---62299965799989999999999997571178722567699999988619
Q 000913 198 LAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAG 274 (1226)
Q Consensus 198 LaG~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (1226)
|+|.++|+ +|+|.+||.++.+... ++.++||+|++ +++..||+||+.|+..- ...+...++++..
T Consensus 49 l~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~-~lf~~Ti~eNi~~~~~~----~~~~~~~~~~~~~---- 116 (241)
T d2pmka1 49 IQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDN-VLLNRSIIDNISLANPG----MSVEKVIYAAKLA---- 116 (241)
T ss_dssp HTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSC-CCTTSBHHHHHCTTSTT----CCHHHHHHHHHHH----
T ss_pred HHHCCCCC---CCEEEECCEEECCCCHHHHHCEEEEEECCC-CCCCCCCCCCCCCCCCC----CCHHHHHHHHHHH----
T ss_conf 97357888---889999999944002465535288982446-55784000352235755----4388899999997----
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 99998867999997522233679999999990994323433346446778866766899999972498534322598799
Q 000913 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGL 354 (1226)
Q Consensus 275 ~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~vG~~~~~glSGGqrkRvsia~~l~~~~~illlDEptsgL 354 (1226)
+ ..-.+..++...+|.+|..+. .|||||||||+|||+++.+|++++|||||++|
T Consensus 117 -----------------~--------~~~~i~~~~~~~~t~i~~~g~-~LSGGq~QRvalARal~~~p~ililDEpts~L 170 (241)
T d2pmka1 117 -----------------G--------AHDFISELREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSAL 170 (241)
T ss_dssp -----------------T--------CHHHHTTSTTGGGSBCSTTTT-CCCHHHHHHHHHHHHHTTCCSEEEECCCCSCC
T ss_pred -----------------H--------HHHHHHHHHCCHHHHCCCCCC-CCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCC
T ss_conf -----------------5--------578887632013443278788-66988989875443444165135564776555
Q ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 999899999999999880497489999549346996629099974983999639667999
Q 000913 355 DSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 355 Ds~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~~fD~i~lL~~G~ivy~G~~~~~~~ 414 (1226)
|+.++..|++.|+++.. ++|+|+.. |.. +....+|+|++|++|+++++|++++++.
T Consensus 171 D~~~~~~i~~~l~~l~~--~~Tvi~it-H~l-~~~~~~D~i~vl~~G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 171 DYESEHVIMRNMHKICK--GRTVIIIA-HRL-STVKNADRIIVMEKGKIVEQGKHKELLS 226 (241)
T ss_dssp CHHHHHHHHHHHHHHHT--TSEEEEEC-SSG-GGGTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred CHHHHHHHHHHHHHHHC--CCEEEEEE-CCH-HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 98999999999999858--99899997-889-9998499999998999999889999982
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=317.91 Aligned_cols=214 Identities=20% Similarity=0.247 Sum_probs=172.8
Q ss_pred EEEECEEEEEECCCHHHHCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 57813055872550124415346854882235233369809999826999677899525089778637989999593488
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++.+|++.++. ...+|+|||+.+++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 Lev~nl~k~yg-------------~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~--p~~G~I~~~G~~i~ 67 (258)
T d1b0ua_ 3 LHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNIN 67 (258)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCCEEECCEEEC
T ss_conf 99997899989-------------9998815066886997999998999829999999974766--78997799999933
Q ss_pred H----------------HHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC-CCC
Q ss_conf 3----------------32200166850489899999999999998873069999988999999999998399753-233
Q 000913 936 Q----------------ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-RQS 998 (1226)
Q Consensus 936 ~----------------~~~~~~~gyv~q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-~~~ 998 (1226)
. ...++.+|||+|++.+++.+||.|++.+..... ...+..+.++++.++++.++|.+. .+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 145 (258)
T d1b0ua_ 68 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDERAQGK 145 (258)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred CCCCCCHHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCCCHHHHCC
T ss_conf 67752000023517679997454489983323141101021365657876--2999899999999999982995244306
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEE
Q ss_conf 24799988789889999999999960998789929999999999999999999987399979999259758999742869
Q 000913 999 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1078 (1226)
Q Consensus 999 ~vg~~~~~~LSgGqrkrl~Ia~~L~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~l 1078 (1226)
.+ ..|||||+||++||++|+.+|++|+|||||+|||+.++..|++.++++.++|.|||+++|++. ++...+|++
T Consensus 146 ~p-----~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri 219 (258)
T d1b0ua_ 146 YP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHV 219 (258)
T ss_dssp CG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEE
T ss_pred CC-----CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHH-HHHHHCCEE
T ss_conf 82-----205677888989999984399878852455568878888998765541036883389948999-999869999
Q ss_pred EEEECCCEEEEECCC
Q ss_conf 899269499996799
Q 000913 1079 FLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1079 l~l~~gg~~vy~g~~ 1093 (1226)
++|.+ |+++..|++
T Consensus 220 ~vm~~-G~iv~~g~~ 233 (258)
T d1b0ua_ 220 IFLHQ-GKIEEEGDP 233 (258)
T ss_dssp EEEET-TEEEEEECH
T ss_pred EEEEC-CEEEEECCH
T ss_conf 99979-999998499
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=324.99 Aligned_cols=229 Identities=22% Similarity=0.366 Sum_probs=179.6
Q ss_pred CCEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHH
Q ss_conf 51699910499999825877678636888899999976765158876552476301699957849999869999289999
Q 000913 116 KVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLL 195 (1226)
Q Consensus 116 ~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL 195 (1226)
...|+|+||++.|.. + ....+|+|+|+.+++|+.++|+||||||||||+
T Consensus 9 ~g~I~~~nvsf~Y~~------------------------------~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl 57 (251)
T d1jj7a_ 9 EGLVQFQDVSFAYPN------------------------------R-PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVA 57 (251)
T ss_dssp CCCEEEEEEEECCTT------------------------------S-TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHH
T ss_pred CCEEEEEEEEEECCC------------------------------C-CCCEEEECEEEEECCCCEEEEECCCCCCHHHHH
T ss_conf 336999998998899------------------------------9-999767443899849989999999998499999
Q ss_pred HHHHCCCCCCCCCEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 99956989999722299996824899776---622999657999899999999999975711787225676999999886
Q 000913 196 LALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKA 272 (1226)
Q Consensus 196 ~~LaG~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~ 272 (1226)
++|+|.++|+ +|+|.+||.++.+... ++.++||+|++. ++..||+||+.|+..... ..+...+.....
T Consensus 58 ~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-lf~~tv~eni~~g~~~~~---~~~~~~~~~~~~-- 128 (251)
T d1jj7a_ 58 ALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQ-VFGRSLQENIAYGLTQKP---TMEEITAAAVKS-- 128 (251)
T ss_dssp HHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCC-CCSSBHHHHHHCSCSSCC---CHHHHHHHHHHH--
T ss_pred HHHHCCCCCC---CCEEEECCEECCHHHHHHHHHHHHHCCCCCC-CCCCCHHHHHHHHHCCCC---HHHHHHHHHHHH--
T ss_conf 9986143787---6899889985311013788877654045650-027634655454210130---278899999999--
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCC
Q ss_conf 19999988679999975222336799999999909943234333464467788667668999999724985343225987
Q 000913 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEIST 352 (1226)
Q Consensus 273 ~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~vG~~~~~glSGGqrkRvsia~~l~~~~~illlDEpts 352 (1226)
...-.+..|++..+|.+++.+. .|||||||||+|||+++.+|++++|||||+
T Consensus 129 ---------------------------~~~~~i~~l~~g~~~~i~~~~~-~LSGGqkQRvaiARal~~~p~ililDEpTs 180 (251)
T d1jj7a_ 129 ---------------------------GAHSFISGLPQGYDTEVDEAGS-QLSGGQRQAVALARALIRKPCVLILDDATS 180 (251)
T ss_dssp ---------------------------TCHHHHHTSTTGGGCBCCSSCS-SSCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred ---------------------------HHHHHHHHCCCCCHHHHHCCCC-CCCHHHCEEEEEEECCCCCCCEEEECCCCC
T ss_conf ---------------------------8999998561211136751676-689547048998604456870787167576
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 99999899999999999880497489999549346996629099974983999639667999
Q 000913 353 GLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 353 gLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~~fD~i~lL~~G~ivy~G~~~~~~~ 414 (1226)
+||+.+...|++.|+++.+..++|+++ +.|.. +....+|+|++|++|+++++|+++++++
T Consensus 181 ~LD~~~~~~i~~~l~~l~~~~~~Tvi~-itH~l-~~~~~aDrI~vl~~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 181 ALDANSQLQVEQLLYESPERYSRSVLL-ITQHL-SLVEQADHILFLEGGAIREGGTHQQLME 240 (251)
T ss_dssp TCCHHHHHHHHHHHHTCGGGGGCEEEE-ECSCH-HHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEE-EECCH-HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 568536899999999976506989999-95979-9998599999998999999889999985
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=314.76 Aligned_cols=220 Identities=22% Similarity=0.286 Sum_probs=181.1
Q ss_pred EEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHH
Q ss_conf 99910499999825877678636888899999976765158876552476301699957849999869999289999999
Q 000913 119 VRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLAL 198 (1226)
Q Consensus 119 v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~L 198 (1226)
++++||+..+.. .+....+|+|||+.+++|++++|+|||||||||||++|
T Consensus 2 I~i~nlsk~y~~------------------------------~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i 51 (230)
T d1l2ta_ 2 IKLKNVTKTYKM------------------------------GEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII 51 (230)
T ss_dssp EEEEEEEEEEEE------------------------------TTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHH
T ss_pred EEEEEEEEEECC------------------------------CCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHC
T ss_conf 899907999489------------------------------98208987133778849979999889999821655750
Q ss_pred HCCCCCCCCCEEEEEECCCCCCCCCCC-------CEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 569899997222999968248997766-------2299965799989999999999997571178722567699999988
Q 000913 199 AGKLDPTLKVSGTVTYNGHDMDEFVPQ-------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREK 271 (1226)
Q Consensus 199 aG~~~~~~~~~G~V~~nG~~~~~~~~~-------~~~~yv~Q~d~~~~~lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~~ 271 (1226)
+|..+|+ +|+|.++|.++.....+ +.++||+|+..++|.+||+||+.|+...+..+...
T Consensus 52 ~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~----------- 117 (230)
T d1l2ta_ 52 GCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMS----------- 117 (230)
T ss_dssp TTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCC-----------
T ss_pred CCCCCCC---CCEEEECCEECCCCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCC-----------
T ss_conf 6887777---66269999985768855512312555778804124176866888775788872247899-----------
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECC
Q ss_conf 619999988679999975222336799999999909943-2343334644677886676689999997249853432259
Q 000913 272 AAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDV-CADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEI 350 (1226)
Q Consensus 272 ~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~-~~dt~vG~~~~~glSGGqrkRvsia~~l~~~~~illlDEp 350 (1226)
.++....+...++.+||++ .++..+ ..|||||||||+||+||+.+|+++++|||
T Consensus 118 --------------------~~~~~~~~~~~l~~~~L~~~~~~~~p-----~~LSGGqkQRvaIAraL~~~P~lLllDEP 172 (230)
T d1l2ta_ 118 --------------------GEERRKRALECLKMAELEERFANHKP-----NQLSGGQQQRVAIARALANNPPIILADQP 172 (230)
T ss_dssp --------------------HHHHHHHHHHHHHHTTCCGGGTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred --------------------HHHHHHHHHHHHHHHCHHHHHHCCCH-----HHCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf --------------------99999999998876242345534880-----23899999999987565227888994687
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCEEEECCCEEEEECCH
Q ss_conf 87999998999999999998804974899995493469966290999749839996396
Q 000913 351 STGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPR 409 (1226)
Q Consensus 351 tsgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~~fD~i~lL~~G~ivy~G~~ 409 (1226)
|+|||+.++..+++.|+++.+..+.|+|++. |...+ ..++|+|++|.+|++++.|+.
T Consensus 173 Ts~LD~~~~~~i~~~l~~l~~~~g~tii~vT-Hd~~~-a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 173 TGALDSKTGEKIMQLLKKLNEEDGKTVVVVT-HDINV-ARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHTTCCEEEEEC-SCHHH-HTTSSEEEEEETTEEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCEEEEEC-CCHHH-HHHCCEEEEEECCEEEEECCC
T ss_conf 6546989999999999999984399999987-88899-986998999989999995257
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=319.11 Aligned_cols=217 Identities=24% Similarity=0.264 Sum_probs=172.7
Q ss_pred EEEECEEEEEECCCHHHHCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 57813055872550124415346854882235233369809999826999677899525089778637989999593488
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++.+|++.++ +..++|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 5 L~v~nlsk~y-------------g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~--p~~G~I~~~g~~i~ 69 (254)
T d1g6ha_ 5 LRTENIVKYF-------------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDIT 69 (254)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECC
T ss_conf 9997789997-------------99688712179988997999999999849999999977976--88737999999664
Q ss_pred HH---H-HCCEEEEEECCCCCCCCCCHHHHHHHHHHHHC----------CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 33---2-20016685048989999999999999887306----------9999988999999999998399753233247
Q 000913 936 QE---T-FARISGYCEQNDIHSPFVTIYESLLFSAWLRL----------SPEVDSETRKMFIDEVMELVELNPLRQSLVG 1001 (1226)
Q Consensus 936 ~~---~-~~~~~gyv~q~d~~~~~lTv~E~l~f~a~lr~----------~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg 1001 (1226)
.. . .++.++|++|+...++.+||.|++.+++..+. ......++..+++.++++.+++.+..+..+
T Consensus 70 ~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 148 (254)
T d1g6ha_ 70 NKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA- 148 (254)
T ss_dssp TCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG-
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCH-
T ss_conf 0569999983387257764247887423214301333034504566542135328999999999987619630205953-
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEE
Q ss_conf 99988789889999999999960998789929999999999999999999987399979999259758999742869899
Q 000913 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1226)
Q Consensus 1002 ~~~~~~LSgGqrkrl~Ia~~L~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~ll~l 1081 (1226)
..||||||||++||++|+.+|++|+|||||+|||+.++..+++.+++++++|.|||+++|+.. ++.+.+|++++|
T Consensus 149 ----~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~vm 223 (254)
T d1g6ha_ 149 ----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVM 223 (254)
T ss_dssp ----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEE
T ss_pred ----HHCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEE
T ss_conf ----569918888999999997592723243976569999999999999999978998999947699-999869999999
Q ss_pred ECCCEEEEECCCC
Q ss_conf 2694999967998
Q 000913 1082 KRGGQEIYVGPLG 1094 (1226)
Q Consensus 1082 ~~gg~~vy~g~~~ 1094 (1226)
.+ |+++..|+..
T Consensus 224 ~~-G~iv~~g~~~ 235 (254)
T d1g6ha_ 224 FN-GQIIAEGRGE 235 (254)
T ss_dssp ET-TEEEEEEESH
T ss_pred EC-CEEEEEECHH
T ss_conf 69-9899996689
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=0 Score=319.24 Aligned_cols=214 Identities=22% Similarity=0.331 Sum_probs=170.9
Q ss_pred EEEEECEEEEEECCCHHHHCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 25781305587255012441534685488223523336980999982699967789952508977863798999959348
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
-++.+|++.++. ...+|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 6 ~Lev~~l~k~yg-------------~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~--p~~G~I~~~G~~i 70 (240)
T d1ji0a_ 6 VLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCCCC
T ss_conf 799961899989-------------9888830257888997999999999859999999967888--8803898424434
Q ss_pred CHH---HH-CCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 833---22-001668504898999999999999988730699999889999999999983-9975323324799988789
Q 000913 935 KQE---TF-ARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELV-ELNPLRQSLVGLPGVSGLS 1009 (1226)
Q Consensus 935 ~~~---~~-~~~~gyv~q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l-~L~~~~~~~vg~~~~~~LS 1009 (1226)
... .. +..++|++|+..+++.+||+|++.+.+..+. ..+..++.++++++.+ ++.+..+..+ ..||
T Consensus 71 ~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~LS 141 (240)
T d1ji0a_ 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQLG-----GTLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC----CSSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSC
T ss_pred CCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHCHHHHHHCCH-----HHCC
T ss_conf 4660888887423556765545776369999998887327----888999999999987417688875854-----3389
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEE
Q ss_conf 88999999999996099878992999999999999999999998739997999925975899974286989926949999
Q 000913 1010 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIY 1089 (1226)
Q Consensus 1010 gGqrkrl~Ia~~L~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~ll~l~~gg~~vy 1089 (1226)
||||||++||++|+.+|++|+|||||+|||+.++..+++.+++++++|.|||+++|+.. ++.+.+|++++|.+ |++++
T Consensus 142 GG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~-G~iv~ 219 (240)
T d1ji0a_ 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVL 219 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEE
T ss_conf 99999999999998299874003988679999999999999999968998999958899-99996999999989-99999
Q ss_pred ECCCC
Q ss_conf 67998
Q 000913 1090 VGPLG 1094 (1226)
Q Consensus 1090 ~g~~~ 1094 (1226)
.|+..
T Consensus 220 ~g~~~ 224 (240)
T d1ji0a_ 220 EGKAS 224 (240)
T ss_dssp EEEHH
T ss_pred ECCHH
T ss_conf 84899
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=327.05 Aligned_cols=230 Identities=24% Similarity=0.386 Sum_probs=173.9
Q ss_pred CCCCCCCEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCC
Q ss_conf 99999516999104999998258776786368888999999767651588765524763016999578499998699992
Q 000913 111 GIDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSG 190 (1226)
Q Consensus 111 ~~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GsG 190 (1226)
.++....+++|+|+++.|.. ...++|+|||+.+++|+.++|+||||||
T Consensus 9 pl~~~~g~I~~~nvsf~Y~~--------------------------------~~~~vL~~isl~i~~Ge~vaivG~sGsG 56 (255)
T d2hyda1 9 PIEIKQGRIDIDHVSFQYND--------------------------------NEAPILKDINLSIEKGETVAFVGMSGGG 56 (255)
T ss_dssp CCCCCSCCEEEEEEEECSCS--------------------------------SSCCSEEEEEEEECTTCEEEEECSTTSS
T ss_pred CCCCCCCEEEEEEEEEEECC--------------------------------CCCCCEECEEEEECCCCEEEEECCCCCC
T ss_conf 77777887999988999599--------------------------------9976064438998399899998899980
Q ss_pred HHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 8999999956989999722299996824899776---6229996579998999999999999757117872256769999
Q 000913 191 KTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELA 267 (1226)
Q Consensus 191 KSTLL~~LaG~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTVrEtl~f~~~~~~~~~~~~~~~~~~ 267 (1226)
||||+++|+|.++|+ +|+|.++|.++.+... ++.++||+|++ +++..||+||+.|+.. ....+.+.+++
T Consensus 57 KSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~-~lf~~Ti~eNi~~g~~----~~~~~~~~~al 128 (255)
T d2hyda1 57 KSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDN-ILFSDTVKENILLGRP----TATDEEVVEAA 128 (255)
T ss_dssp HHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSC-CCCSSBHHHHHGGGCS----SCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC---CCCCCCCCEECCCCCHHHHHHEEEEEECCC-CCCCCCHHHHHHCCCC----CCCHHHHHHHH
T ss_conf 999999997127863---000153998753078888634145651015-6899879999851586----79999999999
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 99886199999886799999752223367999999999099432343334644677886676689999997249853432
Q 000913 268 RREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFM 347 (1226)
Q Consensus 268 ~~~~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~vG~~~~~glSGGqrkRvsia~~l~~~~~illl 347 (1226)
+. .+. .+ .+..|+++.||.+|+.+. .||||||||++|||+++.+|++++|
T Consensus 129 ~~---~~l-----------------------~~---~i~~lp~gl~t~i~~~g~-~LSgGq~QRi~iARal~~~p~ilil 178 (255)
T d2hyda1 129 KM---ANA-----------------------HD---FIMNLPQGYDTEVGERGV-KLSGGQKQRLSIARIFLNNPPILIL 178 (255)
T ss_dssp HH---TTC-----------------------HH---HHHTSTTGGGCBCCGGGT-TSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred HH---HCC-----------------------HH---HHHHCCCCCCCHHCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99---697-----------------------99---997362420103338889-8499999999999998559989998
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 2598799999899999999999880497489999549346996629099974983999639667999
Q 000913 348 DEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 348 DEptsgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~~fD~i~lL~~G~ivy~G~~~~~~~ 414 (1226)
||||++||+.+...|++.|+.+. .++|+|+.. |. .+....||+|++|++|+++..|+++++++
T Consensus 179 DEpts~LD~~t~~~i~~~l~~l~--~~~TvI~it-H~-~~~~~~~D~ii~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 179 DEATSALDLESESIIQEALDVLS--KDRTTLIVA-HR-LSTITHADKIVVIENGHIVETGTHRELIA 241 (255)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEEC-SS-GGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHHHHH--CCCEEEEEE-CC-HHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 37654479779999999999875--388899996-89-99998599999998999999889999986
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=319.46 Aligned_cols=230 Identities=25% Similarity=0.409 Sum_probs=176.9
Q ss_pred CCCCCCEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCH
Q ss_conf 99995169991049999982587767863688889999997676515887655247630169995784999986999928
Q 000913 112 IDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYLRIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGK 191 (1226)
Q Consensus 112 ~~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GsGK 191 (1226)
++.++.+++|+||++.|.. ...++|+|||+.+++|+.++|+|||||||
T Consensus 7 ~~~~~g~I~~~nvsf~Y~~--------------------------------~~~~~L~~isl~i~~Ge~iaivG~sGsGK 54 (253)
T d3b60a1 7 IDRATGDLEFRNVTFTYPG--------------------------------REVPALRNINLKIPAGKTVALVGRSGSGK 54 (253)
T ss_dssp CSCCCCCEEEEEEEECSSS--------------------------------SSCCSEEEEEEEECTTCEEEEEECTTSSH
T ss_pred CCCCCEEEEEEEEEEEECC--------------------------------CCCCEEECEEEEECCCCEEEEECCCCCHH
T ss_conf 6778307999988999299--------------------------------99763533289985999999999999859
Q ss_pred HHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 999999956989999722299996824899776---62299965799989999999999997571178722567699999
Q 000913 192 TTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELAR 268 (1226)
Q Consensus 192 STLL~~LaG~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTVrEtl~f~~~~~~~~~~~~~~~~~~~ 268 (1226)
|||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|++ +++..|+++|+.|+.... ...+.+.++++
T Consensus 55 STLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-~l~~~ti~~n~~~~~~~~---~~~~~i~~a~~ 127 (253)
T d3b60a1 55 STIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNV-HLFNDTVANNIAYARTEE---YSREQIEEAAR 127 (253)
T ss_dssp HHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSC-CCCSSBHHHHHHTTTTSC---CCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCC---CCEEEECCCCCCHHHHHHHHHEEEEEEECC-CCCCCCHHHHHHHCCCCC---CCHHHHHHHHH
T ss_conf 99999986216888---468987880121110665420687995025-447862024332057220---89999999999
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 98861999998867999997522233679999999990994323433346446778866766899999972498534322
Q 000913 269 REKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMD 348 (1226)
Q Consensus 269 ~~~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~vG~~~~~glSGGqrkRvsia~~l~~~~~illlD 348 (1226)
. .+. .+ . +-.|++..||.+|+.+. .|||||||||+|||||+.+|++++||
T Consensus 128 ~---~~l-----------------------~~-~--i~~l~~gl~t~~~~~~~-~LSGGqkQRvaiARal~~~p~ililD 177 (253)
T d3b60a1 128 M---AYA-----------------------MD-F--INKMDNGLDTIIGENGV-LLSGGQRQRIAIARALLRDSPILILD 177 (253)
T ss_dssp T---TTC-----------------------HH-H--HHHSTTGGGSBCCTTSC-SSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred H---HHH-----------------------HH-H--HHHCCCCCHHHHCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 9---817-----------------------99-9--97355441014348889-84999999999999995499889951
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 598799999899999999999880497489999549346996629099974983999639667999
Q 000913 349 EISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 349 EptsgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~~fD~i~lL~~G~ivy~G~~~~~~~ 414 (1226)
|||++||+.+...|++.|+++.. ++|+|+. .|.. +....||+|++|++|+|+++|+++++++
T Consensus 178 Epts~LD~~~~~~i~~~l~~l~~--~~Tvi~i-tH~l-~~~~~~D~v~vl~~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 178 EATSALDTESERAIQAALDELQK--NRTSLVI-AHRL-STIEQADEIVVVEDGIIVERGTHSELLA 239 (253)
T ss_dssp TTTSSCCHHHHHHHHHHHHHHHT--TSEEEEE-CSCG-GGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCC--CCEEEEE-ECCH-HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 64445898899999999987522--7889999-8879-9998599999998999999889999986
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=306.99 Aligned_cols=207 Identities=25% Similarity=0.299 Sum_probs=179.6
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC--CCEEEEECCCCCCCCCCC
Q ss_conf 247630169995784999986999928999999956989999722299996824899776--622999657999899999
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP--QRTAAYISQHDNHIGEMT 242 (1226)
Q Consensus 165 ~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~V~~nG~~~~~~~~--~~~~~yv~Q~d~~~~~lT 242 (1226)
+++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.+... ++.++||+|++..++++|
T Consensus 15 ~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~lt 91 (238)
T d1vpla_ 15 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQ 91 (238)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSB
T ss_pred EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCHHHHHHHEEEEEECCCCCCCCC
T ss_conf 99980625688489799999999999999999996698878---887999867244683988721867500154687866
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999997571178722567699999988619999988679999975222336799999999909943234333464467
Q 000913 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1226)
Q Consensus 243 VrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~vG~~~~~ 322 (1226)
|+|++.|.+.+.+... .+....++.+++.++|.+-.+..++
T Consensus 92 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 132 (238)
T d1vpla_ 92 GIEYLRFVAGFYASSS----------------------------------SEIEEMVERATEIAGLGEKIKDRVS----- 132 (238)
T ss_dssp HHHHHHHHHHHHCCCH----------------------------------HHHHHHHHHHHHHHCCGGGGGSBGG-----
T ss_pred HHHHHHHHHHHCCCCH----------------------------------HHHHHHHHHHHHHCCCHHHHHHHHH-----
T ss_conf 7788898998617998----------------------------------9999999999986797888850453-----
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCEEEECCCE
Q ss_conf 78866766899999972498534322598799999899999999999880497489999549346996629099974983
Q 000913 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1226)
Q Consensus 323 glSGGqrkRvsia~~l~~~~~illlDEptsgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~~fD~i~lL~~G~ 402 (1226)
.+|||||||++||++|+.+|++++|||||+|||+.++.++.+.++++.. .+.|+++ ..|...++..++|+|++|.+|+
T Consensus 133 ~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~-~g~tii~-~tH~l~~~~~~~drv~vl~~G~ 210 (238)
T d1vpla_ 133 TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILV-SSHNMLEVEFLCDRIALIHNGT 210 (238)
T ss_dssp GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEE-EECCHHHHTTTCSEEEEEETTE
T ss_pred HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EECCHHHHHHHCCEEEEEECCE
T ss_conf 3799898999999998659998873379889798999999999999996-5998999-9598999999699999998999
Q ss_pred EEEECCHHHHHHH
Q ss_conf 9996396679999
Q 000913 403 IVYQGPRELVLEF 415 (1226)
Q Consensus 403 ivy~G~~~~~~~~ 415 (1226)
+++.|+.+++.+.
T Consensus 211 iv~~g~~~el~~~ 223 (238)
T d1vpla_ 211 IVETGTVEELKER 223 (238)
T ss_dssp EEEEEEHHHHHHH
T ss_pred EEEECCHHHHHHC
T ss_conf 9999289999865
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=0 Score=307.62 Aligned_cols=205 Identities=22% Similarity=0.338 Sum_probs=171.5
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC----CEEEEECCCCCCCCC
Q ss_conf 2476301699957849999869999289999999569899997222999968248997766----229996579998999
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHIGE 240 (1226)
Q Consensus 165 ~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~V~~nG~~~~~~~~~----~~~~yv~Q~d~~~~~ 240 (1226)
..+|+|||+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++....+. ..++|++|+..+++.
T Consensus 19 ~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ 95 (240)
T d1ji0a_ 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
T ss_conf 88883025788899799999999985999999996788888---038984244344660888887423556765545776
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCC
Q ss_conf 999999999757117872256769999998861999998867999997522233679999999990-9943234333464
Q 000913 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLDVCADTMVGDE 319 (1226)
Q Consensus 241 lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~l-gL~~~~dt~vG~~ 319 (1226)
+||+||+.+.+........ .....+.++..+ +|.+..+..++
T Consensus 96 ltv~en~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~l~~~~~~~~~-- 138 (240)
T d1ji0a_ 96 LTVYENLMMGAYNRKDKEG-----------------------------------IKRDLEWIFSLFPRLKERLKQLGG-- 138 (240)
T ss_dssp SBHHHHHHGGGTTCCCSSH-----------------------------------HHHHHHHHHHHCHHHHTTTTSBSS--
T ss_pred CCHHHHHHHHHHHCCCHHH-----------------------------------HHHHHHHHHHHHHCHHHHHHCCHH--
T ss_conf 3699999988873278889-----------------------------------999999999874176888758543--
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCEEEEC
Q ss_conf 46778866766899999972498534322598799999899999999999880497489999549346996629099974
Q 000913 320 MIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1226)
Q Consensus 320 ~~~glSGGqrkRvsia~~l~~~~~illlDEptsgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~~fD~i~lL~ 399 (1226)
.|||||||||+||++|+.+|++|+|||||+|||+.+..++++.++++.. .+.| |+.++|...++..++|+|++|.
T Consensus 139 ---~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~-~g~t-il~~tH~l~~~~~~~drv~vl~ 213 (240)
T d1ji0a_ 139 ---TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTT-ILLVEQNALGALKVAHYGYVLE 213 (240)
T ss_dssp ---SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCC-EEEEESCHHHHHHHCSEEEEEE
T ss_pred ---HCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCE-EEEEECCHHHHHHHCCEEEEEE
T ss_conf ---3899999999999999829987400398867999999999999999996-8998-9999588999999699999998
Q ss_pred CCEEEEECCHHHHHH
Q ss_conf 983999639667999
Q 000913 400 DGQIVYQGPRELVLE 414 (1226)
Q Consensus 400 ~G~ivy~G~~~~~~~ 414 (1226)
+|++++.|+.+++.+
T Consensus 214 ~G~iv~~g~~~el~~ 228 (240)
T d1ji0a_ 214 TGQIVLEGKASELLD 228 (240)
T ss_dssp TTEEEEEEEHHHHHT
T ss_pred CCEEEEECCHHHHHC
T ss_conf 999999848999842
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=319.77 Aligned_cols=208 Identities=25% Similarity=0.351 Sum_probs=163.1
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCC
Q ss_conf 47630169995784999986999928999999956989999722299996824899776---622999657999899999
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYISQHDNHIGEMT 242 (1226)
Q Consensus 166 ~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1226)
.+|+|||+.++||+.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|++. ++..|
T Consensus 16 ~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-lf~~t 91 (242)
T d1mv5a_ 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSA-IMAGT 91 (242)
T ss_dssp CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSC-CCCEE
T ss_pred CEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCC---CCEEEECCEEECCCCHHHHHHHEEEECCCCC-CCCCC
T ss_conf 4142258998599999999999997999999999960989---8779889988442467888743679756654-57853
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999997571178722567699999988619999988679999975222336799999999909943234333464467
Q 000913 243 VRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIR 322 (1226)
Q Consensus 243 VrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~vG~~~~~ 322 (1226)
|+||+.++..... ..+...+..+.... .-....+++..+|.+|+.+.
T Consensus 92 i~eNi~~~~~~~~---~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~i~~~g~- 138 (242)
T d1mv5a_ 92 IRENLTYGLEGDY---TDEDLWQVLDLAFA-----------------------------RSFVENMPDQLNTEVGERGV- 138 (242)
T ss_dssp HHHHTTSCTTSCS---CHHHHHHHHHHHTC-----------------------------TTTTTSSTTGGGCEESTTSB-
T ss_pred HHHHEECCCCCCC---CHHHHHHHHHHHHH-----------------------------HHHHCCCCCCCCCCCCCCCC-
T ss_conf 4543012445554---23567789999975-----------------------------55420374210152368789-
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCEEEECCCE
Q ss_conf 78866766899999972498534322598799999899999999999880497489999549346996629099974983
Q 000913 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1226)
Q Consensus 323 glSGGqrkRvsia~~l~~~~~illlDEptsgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~~fD~i~lL~~G~ 402 (1226)
.|||||||||+||||++.+|++++|||||++||+.++..|++.|+++. .+.|+|+. .|.. +....||+|++|++|+
T Consensus 139 ~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~~Tvi~i-tH~l-~~~~~~D~i~vl~~G~ 214 (242)
T d1mv5a_ 139 KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLVI-AHRL-STIVDADKIYFIEKGQ 214 (242)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEEE-CCSH-HHHHHCSEEEEEETTE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEE-ECCH-HHHHHCCEEEEEECCE
T ss_conf 879999999999999852998999658865569889999988788871--79989999-7879-9998499999998999
Q ss_pred EEEECCHHHHHH
Q ss_conf 999639667999
Q 000913 403 IVYQGPRELVLE 414 (1226)
Q Consensus 403 ivy~G~~~~~~~ 414 (1226)
++++|+++++++
T Consensus 215 iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 215 ITGSGKHNELVA 226 (242)
T ss_dssp ECCCSCHHHHHH
T ss_pred EEEECCHHHHHH
T ss_conf 999999999986
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=314.27 Aligned_cols=211 Identities=27% Similarity=0.425 Sum_probs=173.4
Q ss_pred EEEEECEEEEEECCCHHHHCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 25781305587255012441534685488223523336980999982699967789952508977863798999959348
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++|+||+|.|+. +...+|+|||+.+++|+.+||+|+||||||||+++|+|... +.+|+|.+||.+.
T Consensus 1 eI~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 67 (241)
T d2pmka1 1 DITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDL 67 (241)
T ss_dssp EEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred CEEEEEEEEEECC-----------CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC--CCCCEEEECCEEE
T ss_conf 9299999999089-----------99603742489984999999999999989999999973578--8888999999994
Q ss_pred CH---HHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC-------CCCCCCCCCCC
Q ss_conf 83---322001668504898999999999999988730699999889999999999983997-------53233247999
Q 000913 935 KQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELN-------PLRQSLVGLPG 1004 (1226)
Q Consensus 935 ~~---~~~~~~~gyv~q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-------~~~~~~vg~~~ 1004 (1226)
.. ..+++.++||+|++.+++ .|++|++.|.. ...+.++ ++++++..++. .-.++.++..
T Consensus 68 ~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~~~-----~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~t~i~~~- 136 (241)
T d2pmka1 68 ALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN-----PGMSVEK----VIYAAKLAGAHDFISELREGYNTIVGEQ- 136 (241)
T ss_dssp TTSCHHHHHHHEEEECSSCCCTT-SBHHHHHCTTS-----TTCCHHH----HHHHHHHHTCHHHHTTSTTGGGSBCSTT-
T ss_pred CCCCHHHHHCEEEEEECCCCCCC-CCCCCCCCCCC-----CCCCHHH----HHHHHHHHHHHHHHHHHHCCHHHHCCCC-
T ss_conf 40024655352889824465578-40003522357-----5543888----9999999755788876320134432787-
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECC
Q ss_conf 88789889999999999960998789929999999999999999999987399979999259758999742869899269
Q 000913 1005 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1226)
Q Consensus 1005 ~~~LSgGqrkrl~Ia~~L~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~ll~l~~g 1084 (1226)
...||||||||++|||+|+.+|+||+||||||+||+.++..|++.++++. .|+|+|+++|+++ ....+|++++|.+
T Consensus 137 g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~~- 212 (241)
T d2pmka1 137 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVMEK- 212 (241)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG--GGTTSSEEEEEET-
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCHH--HHHHCCEEEEEEC-
T ss_conf 88669889898754434441651355647765559899999999999985-8998999978899--9984999999989-
Q ss_pred CEEEEECCC
Q ss_conf 499996799
Q 000913 1085 GQEIYVGPL 1093 (1226)
Q Consensus 1085 g~~vy~g~~ 1093 (1226)
|+++..|+.
T Consensus 213 G~Iv~~G~~ 221 (241)
T d2pmka1 213 GKIVEQGKH 221 (241)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
T ss_conf 999998899
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=307.56 Aligned_cols=192 Identities=22% Similarity=0.361 Sum_probs=91.8
Q ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCHH-HHCCEEEEEECCCCCCCCCCHHHHHHH
Q ss_conf 3523336980999982699967789952508977863798999959348833-220016685048989999999999999
Q 000913 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTIYESLLF 964 (1226)
Q Consensus 886 ~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~q~d~~~~~lTv~E~l~f 964 (1226)
|||+.+. ++.++|+||||||||||+++|+|... +.+|+|.++|.+.... ..+|.+|||+|++.++|.+||+|++.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCC--CCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHH
T ss_conf 9999749-97999997999809999999973999--89628999999988699899285225231443522015576665
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
Q ss_conf 88730699999889999999999983997532332479998878988999999999996099878992999999999999
Q 000913 965 SAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1044 (1226)
Q Consensus 965 ~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGqrkrl~Ia~~L~~~P~iL~LDEPTsgLD~~~~~ 1044 (1226)
+. + ..+..+++++++++++.++|.+..+..+ ..|||||||||+|||||+.+|++|+|||||+|||+.++.
T Consensus 94 ~l--~---~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GL--R---NVERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TC--T---TSCHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred HH--C---CCCHHHHHHHHHHHHHHCCCHHHHHCCH-----HHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHH
T ss_conf 32--3---3677889999999998638375665794-----448999989999987775167706752865558879999
Q ss_pred HHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECC
Q ss_conf 999999998739-997999925975899974286989926949999679
Q 000913 1045 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1092 (1226)
Q Consensus 1045 ~i~~~l~~l~~~-g~tvi~t~Hqps~~i~~~fD~ll~l~~gg~~vy~g~ 1092 (1226)
.+++.++++.+. |.|||+++|++. ++.+.+|++++|.+ |+++..|+
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~-G~ii~~G~ 210 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGK 210 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEEEC
T ss_conf 9999999998743976999818999-99996999999989-99999906
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=302.25 Aligned_cols=206 Identities=23% Similarity=0.328 Sum_probs=173.0
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC----------------CCEE
Q ss_conf 247630169995784999986999928999999956989999722299996824899776----------------6229
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP----------------QRTA 228 (1226)
Q Consensus 165 ~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~V~~nG~~~~~~~~----------------~~~~ 228 (1226)
..+|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++....+ ++.+
T Consensus 15 ~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~i 91 (258)
T d1b0ua_ 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 91 (258)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCEEECCEEECCCCCCCHHCCCCCHHHHHHHHCCE
T ss_conf 99881506688699799999899982999999997476678---997799999933677520000235176799974544
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 996579998999999999999757-1178722567699999988619999988679999975222336799999999909
Q 000913 229 AYISQHDNHIGEMTVRETLAFSAR-CQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307 (1226)
Q Consensus 229 ~yv~Q~d~~~~~lTVrEtl~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~lg 307 (1226)
+||+|+...++.+||.|++.|+.. ..+. .+ .+....+..+++.+|
T Consensus 92 g~vfQ~~~l~~~~tv~env~~~~~~~~~~-~~---------------------------------~~~~~~~~~~l~~~~ 137 (258)
T d1b0ua_ 92 TMVFQHFNLWSHMTVLENVMEAPIQVLGL-SK---------------------------------HDARERALKYLAKVG 137 (258)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCC-CH---------------------------------HHHHHHHHHHHHHTT
T ss_pred EEEEECHHHCCCHHCCHHHHHHHHHHCCC-CH---------------------------------HHHHHHHHHHHHHCC
T ss_conf 89983323141101021365657876299-98---------------------------------999999999999829
Q ss_pred CCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHH
Q ss_conf 9432-343334644677886676689999997249853432259879999989999999999988049748999954934
Q 000913 308 LDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 386 (1226)
Q Consensus 308 L~~~-~dt~vG~~~~~glSGGqrkRvsia~~l~~~~~illlDEptsgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~ 386 (1226)
|.+- .+... ..|||||||||+||++|+.+|+++++||||+|||+.++.+|++.|+++.. .+. +++.+.|...
T Consensus 138 l~~~~~~~~p-----~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g~-til~vtHdl~ 210 (258)
T d1b0ua_ 138 IDERAQGKYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGK-TMVVVTHEMG 210 (258)
T ss_dssp CCHHHHTSCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTC-CEEEECSCHH
T ss_pred CCHHHHCCCC-----CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CCC-CEEEEECCHH
T ss_conf 9524430682-----20567788898999998439987885245556887888899876554103-688-3389948999
Q ss_pred HHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 6996629099974983999639667999
Q 000913 387 ETYDLFDDIILLSDGQIVYQGPRELVLE 414 (1226)
Q Consensus 387 ~~~~~fD~i~lL~~G~ivy~G~~~~~~~ 414 (1226)
++..++|+|++|.+|++++.|+.+++..
T Consensus 211 ~~~~~adri~vm~~G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 211 FARHVSSHVIFLHQGKIEEEGDPEQVFG 238 (258)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 9998699999997999999849999983
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=309.47 Aligned_cols=219 Identities=26% Similarity=0.354 Sum_probs=180.5
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC----CEEEEECCCCCCCCC
Q ss_conf 2476301699957849999869999289999999569899997222999968248997766----229996579998999
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ----RTAAYISQHDNHIGE 240 (1226)
Q Consensus 165 ~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~V~~nG~~~~~~~~~----~~~~yv~Q~d~~~~~ 240 (1226)
.++|+|||+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++....+. +.++|++|+...++.
T Consensus 17 ~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ 93 (254)
T d1g6ha_ 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 93 (254)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 68871217998899799999999984999999997797688---737999999664056999998338725776424788
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999999975711787225676999999886199999886799999752223367999999999099432343334644
Q 000913 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEM 320 (1226)
Q Consensus 241 lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~vG~~~ 320 (1226)
+||+||+.+++...+..... ... .. ...++ .++....++.+++.+++.+..|..+++
T Consensus 94 ltv~enl~~~~~~~~~~~~~----~~~---~~-~~~~~-------------~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 150 (254)
T d1g6ha_ 94 MTVLENLLIGEICPGESPLN----SLF---YK-KWIPK-------------EEEMVEKAFKILEFLKLSHLYDRKAGE-- 150 (254)
T ss_dssp SBHHHHHHGGGTSTTSCHHH----HHH---HC-SSCCC-------------CHHHHHHHHHHHHHTTCGGGTTSBGGG--
T ss_pred CEEEEEEEEHHHHCCCCCHH----HHH---HH-CCCCC-------------HHHHHHHHHHHHHHCCCCHHCCCCHHH--
T ss_conf 74232143013330345045----665---42-13532-------------899999999998761963020595356--
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCEEEECC
Q ss_conf 67788667668999999724985343225987999998999999999998804974899995493469966290999749
Q 000913 321 IRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1226)
Q Consensus 321 ~~glSGGqrkRvsia~~l~~~~~illlDEptsgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~~fD~i~lL~~ 400 (1226)
|||||||||.||++|+.+|++++|||||+|||+.++.++++.++++.. . +++|+.+.|...++.+++|+|++|++
T Consensus 151 ---LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~-~-g~til~vsHdl~~~~~~~Drv~vm~~ 225 (254)
T d1g6ha_ 151 ---LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-K-GITFLIIEHRLDIVLNYIDHLYVMFN 225 (254)
T ss_dssp ---SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCCSTTGGGCSEEEEEET
T ss_pred ---CCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCHHHHHHHCCEEEEEEC
T ss_conf ---991888899999999759272324397656999999999999999997-8-99899994769999986999999969
Q ss_pred CEEEEECCHHHHHH
Q ss_conf 83999639667999
Q 000913 401 GQIVYQGPRELVLE 414 (1226)
Q Consensus 401 G~ivy~G~~~~~~~ 414 (1226)
|++++.|+.+++..
T Consensus 226 G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 226 GQIIAEGRGEEEIK 239 (254)
T ss_dssp TEEEEEEESHHHHH
T ss_pred CEEEEEECHHHHHH
T ss_conf 98999966899865
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=310.94 Aligned_cols=199 Identities=24% Similarity=0.336 Sum_probs=173.1
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC-CEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 01699957849999869999289999999569899997222999968248997766-22999657999899999999999
Q 000913 170 DVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ-RTAAYISQHDNHIGEMTVRETLA 248 (1226)
Q Consensus 170 ~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~V~~nG~~~~~~~~~-~~~~yv~Q~d~~~~~lTVrEtl~ 248 (1226)
|||+.+. ++.++|+||||||||||+++|+|.++|+ +|+|.+||.++....+. +.++||+|++.++|.+||+||+.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCC---CEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHH
T ss_conf 9999749-9799999799980999999997399989---62899999998869989928522523144352201557666
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 97571178722567699999988619999988679999975222336799999999909943234333464467788667
Q 000913 249 FSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQ 328 (1226)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~vG~~~~~glSGGq 328 (1226)
|+.+-. . +. +.+.+++++++.+||++..|..+. .|||||
T Consensus 93 ~~l~~~--~----------~~------------------------~~~~~v~~~l~~~gl~~~~~~~~~-----~LSGG~ 131 (240)
T d2onka1 93 YGLRNV--E----------RV------------------------ERDRRVREMAEKLGIAHLLDRKPA-----RLSGGE 131 (240)
T ss_dssp TTCTTS--C----------HH------------------------HHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHH
T ss_pred HHHCCC--C----------HH------------------------HHHHHHHHHHHHCCCHHHHHCCHH-----HCCHHH
T ss_conf 532336--7----------78------------------------899999999986383756657944-----489999
Q ss_pred HHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCEEEECCCEEEEECC
Q ss_conf 66899999972498534322598799999899999999999880497489999549346996629099974983999639
Q 000913 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (1226)
Q Consensus 329 rkRvsia~~l~~~~~illlDEptsgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~~fD~i~lL~~G~ivy~G~ 408 (1226)
||||+||+|++.+|++++|||||+|||+.++..+++.++++.+..+.|+|+ +.|...++..++|+|++|++|+++..|+
T Consensus 132 kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~-vtHd~~~~~~~adri~vm~~G~ii~~G~ 210 (240)
T d2onka1 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH-VTHDLIEAAMLADEVAVMLNGRIVEKGK 210 (240)
T ss_dssp HHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEE-EESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHCCEEEEEECCEEEEEEC
T ss_conf 899999877751677067528655588799999999999998743976999-8189999999699999998999999906
Q ss_pred HHHHHH
Q ss_conf 667999
Q 000913 409 RELVLE 414 (1226)
Q Consensus 409 ~~~~~~ 414 (1226)
.+++.+
T Consensus 211 ~~el~~ 216 (240)
T d2onka1 211 LKELFS 216 (240)
T ss_dssp HHHHHH
T ss_pred HHHHHC
T ss_conf 999832
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=307.14 Aligned_cols=214 Identities=24% Similarity=0.388 Sum_probs=177.4
Q ss_pred CCCEEEEECEEEEEECCCHHHHCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECC
Q ss_conf 77125781305587255012441534685488223523336980999982699967789952508977863798999959
Q 000913 852 EPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (1226)
Q Consensus 852 ~~~~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g 931 (1226)
....++++||+|+|+. ....+|+|||+.+++|+++||+|+||||||||+++|+|... +.+|.|.++|
T Consensus 13 ~~g~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g 79 (255)
T d2hyda1 13 KQGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDG 79 (255)
T ss_dssp CSCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETT
T ss_pred CCCEEEEEEEEEEECC-----------CCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCC
T ss_conf 7887999988999599-----------99760644389983998999988999809999999971278--6300015399
Q ss_pred CCCCH---HHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCC-------CCCCC
Q ss_conf 34883---322001668504898999999999999988730699999889999999999983997532-------33247
Q 000913 932 YPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVG 1001 (1226)
Q Consensus 932 ~~~~~---~~~~~~~gyv~q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~-------~~~vg 1001 (1226)
.+... ..+++.++||+|++.+++ .||+||+.|+. ...+.+ .+.++++.+++.+.. ++.++
T Consensus 80 ~~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~-----~~~~~~----~~~~al~~~~l~~~i~~lp~gl~t~i~ 149 (255)
T d2hyda1 80 HNIKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGR-----PTATDE----EVVEAAKMANAHDFIMNLPQGYDTEVG 149 (255)
T ss_dssp EEGGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGC-----SSCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCC
T ss_pred EECCCCCHHHHHHEEEEEECCCCCCC-CCHHHHHHCCC-----CCCCHH----HHHHHHHHHCCHHHHHHCCCCCCCHHC
T ss_conf 87530788886341456510156899-87999985158-----679999----999999996979999736242010333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEE
Q ss_conf 99988789889999999999960998789929999999999999999999987399979999259758999742869899
Q 000913 1002 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1226)
Q Consensus 1002 ~~~~~~LSgGqrkrl~Ia~~L~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~ll~l 1081 (1226)
.. ...||||||||++|||+|+.+|+||+||||||+||+.++..+++.++++. .++|||+++|+++ ....+|++++|
T Consensus 150 ~~-g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~-~~~TvI~itH~~~--~~~~~D~ii~l 225 (255)
T d2hyda1 150 ER-GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS--TITHADKIVVI 225 (255)
T ss_dssp GG-GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG--GTTTCSEEEEE
T ss_pred CC-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCHH--HHHHCCEEEEE
T ss_conf 88-89849999999999999855998999837654479779999999999875-3888999968999--99859999999
Q ss_pred ECCCEEEEECCC
Q ss_conf 269499996799
Q 000913 1082 KRGGQEIYVGPL 1093 (1226)
Q Consensus 1082 ~~gg~~vy~g~~ 1093 (1226)
++ |+++..|+.
T Consensus 226 ~~-G~iv~~G~~ 236 (255)
T d2hyda1 226 EN-GHIVETGTH 236 (255)
T ss_dssp ET-TEEEEEECH
T ss_pred EC-CEEEEECCH
T ss_conf 89-999998899
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=309.68 Aligned_cols=218 Identities=22% Similarity=0.301 Sum_probs=174.0
Q ss_pred CEEEEECEEEEEECCCHHHHCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCC
Q ss_conf 12578130558725501244153468548822352333698099998269996778995250897786379899995934
Q 000913 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1226)
Q Consensus 854 ~~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1226)
..++|+||+|+|+.. ....+|+|||+.+++|+++||+||||||||||+++|+|... +.+|.|.+||.+
T Consensus 10 g~I~~~nvsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~--p~~G~I~i~g~~ 77 (251)
T d1jj7a_ 10 GLVQFQDVSFAYPNR----------PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKP 77 (251)
T ss_dssp CCEEEEEEEECCTTS----------TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CEEEEEEEEEECCCC----------CCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEE
T ss_conf 369999989988999----------99976744389984998999999999849999999861437--876899889985
Q ss_pred CCH---HHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 883---32200166850489899999999999998873069999988999-----9999999983997532332479998
Q 000913 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRK-----MFIDEVMELVELNPLRQSLVGLPGV 1005 (1226)
Q Consensus 934 ~~~---~~~~~~~gyv~q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~-----~~v~~vl~~l~L~~~~~~~vg~~~~ 1005 (1226)
... ..+++.++||+|++.+++ .|++|++.|+.. ......... ....+.++ .+.+-.++.++.. .
T Consensus 78 i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~----~~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~~-~ 149 (251)
T d1jj7a_ 78 LPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLT----QKPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDEA-G 149 (251)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCS----SCCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCSS-C
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHCC-C
T ss_conf 311013788877654045650027-634655454210----1302788999999998999998--5612111367516-7
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEECC
Q ss_conf 87898899999999999609987899299999999999999999999873-99979999259758999742869899269
Q 000913 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1084 (1226)
Q Consensus 1006 ~~LSgGqrkrl~Ia~~L~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~t~Hqps~~i~~~fD~ll~l~~g 1084 (1226)
..||||||||++|||+|+.+|+||+||||||+||+.+...+++.++++.+ .|+|||+++|+++ ..+.+|++++|++
T Consensus 150 ~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~~- 226 (251)
T d1jj7a_ 150 SQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEG- 226 (251)
T ss_dssp SSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEET-
T ss_pred CCCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH--HHHHCCEEEEEEC-
T ss_conf 6689547048998604456870787167576568536899999999976506989999959799--9985999999989-
Q ss_pred CEEEEECCCC
Q ss_conf 4999967998
Q 000913 1085 GQEIYVGPLG 1094 (1226)
Q Consensus 1085 g~~vy~g~~~ 1094 (1226)
|+++..|+..
T Consensus 227 G~iv~~Gt~~ 236 (251)
T d1jj7a_ 227 GAIREGGTHQ 236 (251)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEECCHH
T ss_conf 9999988999
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=306.33 Aligned_cols=213 Identities=23% Similarity=0.316 Sum_probs=175.3
Q ss_pred CEEEEECEEEEEECCCHHHHCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCC
Q ss_conf 12578130558725501244153468548822352333698099998269996778995250897786379899995934
Q 000913 854 HSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 933 (1226)
Q Consensus 854 ~~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 933 (1226)
..++|+||+|.|+. ....+|+|||+.+++|+++||+||||||||||+++|+|... +.+|.|.++|.+
T Consensus 12 g~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~ 78 (253)
T d3b60a1 12 GDLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHD 78 (253)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEE
T ss_pred EEEEEEEEEEEECC-----------CCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCCC
T ss_conf 07999988999299-----------99763533289985999999999999859999999862168--884689878801
Q ss_pred CCH---HHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCC-------CCCCCCC
Q ss_conf 883---322001668504898999999999999988730699999889999999999983997532-------3324799
Q 000913 934 KKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGLP 1003 (1226)
Q Consensus 934 ~~~---~~~~~~~gyv~q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~-------~~~vg~~ 1003 (1226)
... ..+++.++||+|++.++. .|+++++.+.. +...+.+ .++++++..++.+.. ++.++..
T Consensus 79 i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~n~~~~~----~~~~~~~----~i~~a~~~~~l~~~i~~l~~gl~t~~~~~ 149 (253)
T d3b60a1 79 LREYTLASLRNQVALVSQNVHLFN-DTVANNIAYAR----TEEYSRE----QIEEAARMAYAMDFINKMDNGLDTIIGEN 149 (253)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTT----TSCCCHH----HHHHHHHTTTCHHHHHHSTTGGGSBCCTT
T ss_pred CCHHHHHHHHHEEEEEEECCCCCC-CCHHHHHHHCC----CCCCCHH----HHHHHHHHHHHHHHHHHCCCCCHHHHCCC
T ss_conf 211106654206879950254478-62024332057----2208999----99999999817999973554410143488
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEEC
Q ss_conf 98878988999999999996099878992999999999999999999998739997999925975899974286989926
Q 000913 1004 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1226)
Q Consensus 1004 ~~~~LSgGqrkrl~Ia~~L~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~ll~l~~ 1083 (1226)
...||||||||++|||+|+.+|+||+||||||+||+.++..|++.++++. .++|||+++|+++ ..+.+|++++|.+
T Consensus 150 -~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~v~vl~~ 225 (253)
T d3b60a1 150 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEQADEIVVVED 225 (253)
T ss_dssp -SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGG--GTTTCSEEEEEET
T ss_pred -CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH--HHHHCCEEEEEEC
T ss_conf -89849999999999999954998899516444589889999999998752-2788999988799--9985999999989
Q ss_pred CCEEEEECCC
Q ss_conf 9499996799
Q 000913 1084 GGQEIYVGPL 1093 (1226)
Q Consensus 1084 gg~~vy~g~~ 1093 (1226)
|+++..|+.
T Consensus 226 -G~Iv~~G~~ 234 (253)
T d3b60a1 226 -GIIVERGTH 234 (253)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
T ss_conf -999998899
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=315.55 Aligned_cols=211 Identities=27% Similarity=0.402 Sum_probs=171.9
Q ss_pred EEEECEEEEEECCCHHHHCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 57813055872550124415346854882235233369809999826999677899525089778637989999593488
Q 000913 856 LTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKK 935 (1226)
Q Consensus 856 l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 935 (1226)
++++||+|+|+. .+.+|+|||+.+++|+++||+||||||||||+++|+|... +.+|+|.+||.+..
T Consensus 2 le~knvsf~Y~~------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYDD------------SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSSS------------SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEECCC------------CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHC--CCCCEEEECCEEEC
T ss_conf 799988998799------------9841422589985999999999999979999999999609--89877988998844
Q ss_pred H---HHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC-------CCCCCCCCCCC
Q ss_conf 3---3220016685048989999999999999887306999998899999999999839975-------32332479998
Q 000913 936 Q---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGLPGV 1005 (1226)
Q Consensus 936 ~---~~~~~~~gyv~q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-------~~~~~vg~~~~ 1005 (1226)
. ..+++.+|||+|++.+++. |++|++.+.. ....+.+. +++.++..++.. ..++.++.. .
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~-g 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGL----EGDYTDED----LWQVLDLAFARSFVENMPDQLNTEVGER-G 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCT----TSCSCHHH----HHHHHHHHTCTTTTTSSTTGGGCEESTT-S
T ss_pred CCCHHHHHHHEEEECCCCCCCCC-CHHHHEECCC----CCCCCHHH----HHHHHHHHHHHHHHCCCCCCCCCCCCCC-C
T ss_conf 24678887436797566545785-3454301244----55542356----7789999975554203742101523687-8
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCC
Q ss_conf 87898899999999999609987899299999999999999999999873999799992597589997428698992694
Q 000913 1006 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1085 (1226)
Q Consensus 1006 ~~LSgGqrkrl~Ia~~L~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~ll~l~~gg 1085 (1226)
..||||||||++|||||+.+|+||+||||||+||+.++..+++.++++. +|+|||+++|+++ ....+|++++|.+ |
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~~-G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-G 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-T
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH--HHHHCCEEEEEEC-C
T ss_conf 9879999999999999852998999658865569889999988788871-7998999978799--9984999999989-9
Q ss_pred EEEEECCCC
Q ss_conf 999967998
Q 000913 1086 QEIYVGPLG 1094 (1226)
Q Consensus 1086 ~~vy~g~~~ 1094 (1226)
+++..|+..
T Consensus 214 ~iv~~G~~~ 222 (242)
T d1mv5a_ 214 QITGSGKHN 222 (242)
T ss_dssp EECCCSCHH
T ss_pred EEEEECCHH
T ss_conf 999999999
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=304.15 Aligned_cols=198 Identities=21% Similarity=0.326 Sum_probs=154.6
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 24763016999578499998699992899999995698999972229999682489977662299965799989999999
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVR 244 (1226)
Q Consensus 165 ~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTVr 244 (1226)
.++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|.|.++| .++||+|+.. ++..||+
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~-l~~~tv~ 114 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG----------RVSFCSQFSW-IMPGTIK 114 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS----------CEEEECSSCC-CCSEEHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECC----------EEEEEECCCC-CCCCEEE
T ss_conf 76773759998599999999899982999999995797478---82899999----------9999816430-2676032
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999757117872256769999998861999998867999997522233679999999990994323433346446778
Q 000913 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGI 324 (1226)
Q Consensus 245 Etl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~vG~~~~~gl 324 (1226)
||+.|+.... . ....++.+. .+....+..++...++.+|+.+. .|
T Consensus 115 eni~~~~~~~----~-~~~~~~~~~-----------------------------~~~~~~i~~l~~~~~~~~~~~~~-~L 159 (281)
T d1r0wa_ 115 ENIIFGVSYD----E-YRYKSVVKA-----------------------------CQLQQDITKFAEQDNTVLGEGGV-TL 159 (281)
T ss_dssp HHHTTTSCCC----H-HHHHHHHHH-----------------------------TTCHHHHTTSTTGGGCEECTTCT-TS
T ss_pred CCCCCCCCCC----C-HHHHHHHHH-----------------------------HHHHHHHHHCHHHHHHHHHHHCC-CC
T ss_conf 1420333456----0-579999999-----------------------------77699998461233235555423-77
Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCEEEECCCEEE
Q ss_conf 86676689999997249853432259879999989999999999988049748999954934699662909997498399
Q 000913 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1226)
Q Consensus 325 SGGqrkRvsia~~l~~~~~illlDEptsgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~~fD~i~lL~~G~iv 404 (1226)
||||||||+||++|+.+|++++|||||++||+.+..++++.+.... ..++|+|+ +.|.. +....||+|++|++|+++
T Consensus 160 SgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~-~~~~tvi~-itH~~-~~l~~aDrI~vl~~G~i~ 236 (281)
T d1r0wa_ 160 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL-MANKTRIL-VTSKM-EHLRKADKILILHQGSSY 236 (281)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCC-TTTSEEEE-ECSCH-HHHHTCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEE-EECHH-HHHHHCCEEEEEECCEEE
T ss_conf 9999999999999986963513338554489899999999999886-28999999-92528-999859999999899999
Q ss_pred EECCHHHHHH
Q ss_conf 9639667999
Q 000913 405 YQGPRELVLE 414 (1226)
Q Consensus 405 y~G~~~~~~~ 414 (1226)
++|+++++..
T Consensus 237 ~~Gt~~eL~~ 246 (281)
T d1r0wa_ 237 FYGTFSELQS 246 (281)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHHC
T ss_conf 9878999960
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.5e-42 Score=281.00 Aligned_cols=187 Identities=21% Similarity=0.354 Sum_probs=151.2
Q ss_pred EEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHCCEEEEEECCCCCCCCCCHHH
Q ss_conf 48822352333698099998269996778995250897786379899995934883322001668504898999999999
Q 000913 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960 (1226)
Q Consensus 881 ~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~d~~~~~lTv~E 960 (1226)
+++|+|||+.+++|+++||+||||||||||+++|+|... +.+|.|.++|. ++||+|+..+++ .||+|
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~----------i~~v~Q~~~l~~-~tv~e 115 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSGR----------VSFCSQFSWIMP-GTIKE 115 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEECCSC----------EEEECSSCCCCS-EEHHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCE----------EEEEECCCCCCC-CEEEC
T ss_conf 767737599985999999998999829999999957974--78828999999----------999816430267-60321
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC-------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 9999887306999998899999999999839-------975323324799988789889999999999960998789929
Q 000913 961 SLLFSAWLRLSPEVDSETRKMFIDEVMELVE-------LNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1033 (1226)
Q Consensus 961 ~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~-------L~~~~~~~vg~~~~~~LSgGqrkrl~Ia~~L~~~P~iL~LDE 1033 (1226)
++.|+. ...... ..++++.++ +.+..++.++.. ...||||||||++|||+|+.+|+||+|||
T Consensus 116 ni~~~~------~~~~~~----~~~~~~~~~~~~~i~~l~~~~~~~~~~~-~~~LSgGqkQRv~lARaL~~~p~illLDE 184 (281)
T d1r0wa_ 116 NIIFGV------SYDEYR----YKSVVKACQLQQDITKFAEQDNTVLGEG-GVTLSGGQRARISLARAVYKDADLYLLDS 184 (281)
T ss_dssp HHTTTS------CCCHHH----HHHHHHHTTCHHHHTTSTTGGGCEECTT-CTTSCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred CCCCCC------CCCCHH----HHHHHHHHHHHHHHHHCHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 420333------456057----9999999776999984612332355554-23779999999999999986963513338
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCC
Q ss_conf 9999999999999999999873999799992597589997428698992694999967998
Q 000913 1034 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1094 (1226)
Q Consensus 1034 PTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~ll~l~~gg~~vy~g~~~ 1094 (1226)
||++||+.+...+++.+......|+|+|+++|++ +....+|++++|++ |++++.|+..
T Consensus 185 Pts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDrI~vl~~-G~i~~~Gt~~ 242 (281)
T d1r0wa_ 185 PFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKILILHQ-GSSYFYGTFS 242 (281)
T ss_dssp CCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSEEEEEET-TEEEEEECHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHH--HHHHHCCEEEEEEC-CEEEEECCHH
T ss_conf 5544898999999999998862899999992528--99985999999989-9999987899
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.3e-43 Score=282.68 Aligned_cols=194 Identities=22% Similarity=0.364 Sum_probs=161.6
Q ss_pred EEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCH---HHHCCEEEEEECCCCCCCCCCHH
Q ss_conf 822352333698099998269996778995250897786379899995934883---32200166850489899999999
Q 000913 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIY 959 (1226)
Q Consensus 883 iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~d~~~~~lTv~ 959 (1226)
.|++||+.+++||++||+||||||||||+++|+|..+ .+|+|.++|.+... .......+|++|+.......++.
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 90 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHH
T ss_pred EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC---CCEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCHH
T ss_conf 5558888994898999998999809999999948879---9559999999998699899986402451213577442098
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-------CCCEEEEE
Q ss_conf 99999887306999998899999999999839975323324799988789889999999999960-------99878992
Q 000913 960 ESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 1032 (1226)
Q Consensus 960 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGqrkrl~Ia~~L~~-------~P~iL~LD 1032 (1226)
+.+.+... . ..+.+.++++++.+++.+..+..+ ..||||||||++||++|+. +|+||+||
T Consensus 91 ~~~~~~~~----~----~~~~~~~~~~~~~~~l~~~~~~~~-----~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllD 157 (231)
T d1l7vc_ 91 HYLTLHQH----D----KTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 157 (231)
T ss_dssp HHHHHHCS----C----TTCHHHHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHHHHCCC----H----HHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC
T ss_conf 87641001----4----668999999998659876767684-----4569988999999999985171338998899971
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCC
Q ss_conf 99999999999999999999873999799992597589997428698992694999967998
Q 000913 1033 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLG 1094 (1226)
Q Consensus 1033 EPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~ll~l~~gg~~vy~g~~~ 1094 (1226)
|||+|||+.++..+++.++++.+.|.|||+++|+++ ++.+.+|++++|++ |++++.|+..
T Consensus 158 EPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~~-G~iv~~G~~~ 217 (231)
T d1l7vc_ 158 EPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRRE 217 (231)
T ss_dssp SCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEET-TEECCCSBHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECCHH
T ss_conf 877778989999999999999867999999967799-99997999999979-9899988999
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.9e-40 Score=267.84 Aligned_cols=196 Identities=19% Similarity=0.274 Sum_probs=155.9
Q ss_pred EEEEECEEEEEECCCHHHHCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 25781305587255012441534685488223523336980999982699967789952508977863798999959348
Q 000913 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1226)
Q Consensus 855 ~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 934 (1226)
.++.+|+++.++ +.+|+|||+.+++|+++||+||||||||||+++|+|... +.+|+|.+||.+.
T Consensus 2 ~lev~~ls~~y~--------------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i 65 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--------------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPI 65 (200)
T ss_dssp EEEEEEEEEESS--------------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred EEEEEEEEEEEC--------------CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEH
T ss_conf 599998999939--------------928842088985998999999999719999999966205--6778899998962
Q ss_pred CHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 83322001668504898999999999999988730699999889999999999983997532332479998878988999
Q 000913 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1226)
Q Consensus 935 ~~~~~~~~~gyv~q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGqrk 1014 (1226)
.. .+..++|++|+..+...+|+.|++.+.+.++.. ..+. ..+.+.++.+++.++... + ..||+||||
T Consensus 66 ~~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~-~-----~~LSgG~~q 132 (200)
T d1sgwa_ 66 TK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVNK----NEIMDALESVEVLDLKKK-L-----GELSQGTIR 132 (200)
T ss_dssp GG--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCCH----HHHHHHHHHTTCCCTTSB-G-----GGSCHHHHH
T ss_pred HH--HCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCC-CCCH----HHHHHHHHHCCCCCCCCC-C-----CCCCCCHHH
T ss_conf 67--367089995013578882899999999975488-6379----999999987488563012-6-----868971888
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEEC
Q ss_conf 999999996099878992999999999999999999998739997999925975899974286989926
Q 000913 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1083 (1226)
Q Consensus 1015 rl~Ia~~L~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~ll~l~~ 1083 (1226)
|+.||++|+.+|++++|||||+|||+.++..+++.++++.+++.++|+++|+. ++.||.+..|.+
T Consensus 133 rv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 133 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE----LSYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC----CTTSSEEEEGGG
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECH----HHHCCHHHHEEE
T ss_conf 89999988649989998686201699999999999999986799999999162----544161234010
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.2e-40 Score=266.42 Aligned_cols=197 Identities=23% Similarity=0.326 Sum_probs=164.9
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC---CEEEEECCCCCCCCCCCH
Q ss_conf 76301699957849999869999289999999569899997222999968248997766---229996579998999999
Q 000913 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYISQHDNHIGEMTV 243 (1226)
Q Consensus 167 iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~V~~nG~~~~~~~~~---~~~~yv~Q~d~~~~~lTV 243 (1226)
.|++||+.+++|++++|+||||||||||+++|+|.. ++ +|+|.++|.++...... ...+|++|+.......++
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~---~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v 89 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SG---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 89 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CC---SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBH
T ss_pred EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CC---CEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCH
T ss_conf 555888899489899999899980999999994887-99---55999999999869989998640245121357744209
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99999975711787225676999999886199999886799999752223367999999999099432343334644677
Q 000913 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRG 323 (1226)
Q Consensus 244 rEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~vG~~~~~g 323 (1226)
.+++.+...-+ .....++.+++.++|++..+..+. .
T Consensus 90 ~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~~~~~~~-----~ 125 (231)
T d1l7vc_ 90 WHYLTLHQHDK---------------------------------------TRTELLNDVAGALALDDKLGRSTN-----Q 125 (231)
T ss_dssp HHHHHHHCSCT---------------------------------------TCHHHHHHHHHHTTCTTTTTSBGG-----G
T ss_pred HHHHHHCCCHH---------------------------------------HHHHHHHHHHHHCCCHHHHCCCHH-----H
T ss_conf 88764100146---------------------------------------689999999986598767676844-----5
Q ss_pred CCHHHHHHHHHHHHHHC-------CCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCEE
Q ss_conf 88667668999999724-------98534322598799999899999999999880497489999549346996629099
Q 000913 324 ISGGQKKRVTTGEMMVG-------PALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1226)
Q Consensus 324 lSGGqrkRvsia~~l~~-------~~~illlDEptsgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~~fD~i~ 396 (1226)
|||||||||++|++++. +|++++|||||+|||+.+...+.+.++++.. .+.|+++ +.|...++.+++|+|+
T Consensus 126 LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~g~tii~-vtHdl~~~~~~~dri~ 203 (231)
T d1l7vc_ 126 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-QGLAIVM-SSHDLNHTLRHAHRAW 203 (231)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-TTCEEEE-CCCCHHHHHHHCSBCC
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EECCHHHHHHHCCEEE
T ss_conf 6998899999999998517133899889997187777898999999999999986-7999999-9677999999799999
Q ss_pred EECCCEEEEECCHHHHH
Q ss_conf 97498399963966799
Q 000913 397 LLSDGQIVYQGPRELVL 413 (1226)
Q Consensus 397 lL~~G~ivy~G~~~~~~ 413 (1226)
+|.+|++++.|+.+++.
T Consensus 204 vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 204 LLKGGKMLASGRREEVL 220 (231)
T ss_dssp BEETTEECCCSBHHHHS
T ss_pred EEECCEEEEECCHHHHH
T ss_conf 99799899988999981
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=3.4e-38 Score=253.73 Aligned_cols=183 Identities=19% Similarity=0.255 Sum_probs=148.8
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 47630169995784999986999928999999956989999722299996824899776622999657999899999999
Q 000913 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRE 245 (1226)
Q Consensus 166 ~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTVrE 245 (1226)
++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.+||.++.+. +..++|++|+..+...+|+.|
T Consensus 15 ~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~~--~~~i~~~~~~~~~~~~~t~~~ 89 (200)
T d1sgwa_ 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--KGKIFFLPEEIIVPRKISVED 89 (200)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGG--GGGEEEECSSCCCCTTSBHHH
T ss_pred EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEHHHH--CCCEEEEEECCCCCCCCCHHH
T ss_conf 2884208898599899999999971999999996620567---78899998962673--670899950135788828999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99997571178722567699999988619999988679999975222336799999999909943234333464467788
Q 000913 246 TLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGIS 325 (1226)
Q Consensus 246 tl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~vG~~~~~glS 325 (1226)
++.+.+.+.+..... ..+...++.+++.+. +..+ ..||
T Consensus 90 ~l~~~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~~~-~~~~-----~~LS 127 (200)
T d1sgwa_ 90 YLKAVASLYGVKVNK------------------------------------NEIMDALESVEVLDL-KKKL-----GELS 127 (200)
T ss_dssp HHHHHHHHTTCCCCH------------------------------------HHHHHHHHHTTCCCT-TSBG-----GGSC
T ss_pred HHHHHHHHCCCCCCH------------------------------------HHHHHHHHHCCCCCC-CCCC-----CCCC
T ss_conf 999999754886379------------------------------------999999987488563-0126-----8689
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCEEEECC
Q ss_conf 667668999999724985343225987999998999999999998804974899995493469966290999749
Q 000913 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1226)
Q Consensus 326 GGqrkRvsia~~l~~~~~illlDEptsgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~~fD~i~lL~~ 400 (1226)
||||||+.+|++++.+|++++|||||+|||..+...+++.++++.+. +++++++.||.. +++|.+.+|.+
T Consensus 128 gG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~-~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 128 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC----TTSSEEEEGGG
T ss_pred CCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEECHH----HHCCHHHHEEE
T ss_conf 71888899999886499899986862016999999999999999867-999999991625----44161234010
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.41 E-value=1.2e-14 Score=105.80 Aligned_cols=161 Identities=16% Similarity=0.061 Sum_probs=82.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 99998269996778995250897786379899995934883322001668504898999999999999988730699999
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVD 975 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~d~~~~~lTv~E~l~f~a~lr~~~~~~ 975 (1226)
.++|.||||||||||+++|+|... +..|.+.+.+.+..... +..++....-....... ............
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~--~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 71 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWTEEVRDPETK--KRTGFRIITTEGKKKIF------SSKFFTSKKLVG 71 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEEEEEC--------CCEEEEEETTCCEEEE------EETTCCCSSEET
T ss_pred EEEEECCCCCHHHHHHHHHHHCCC--CCCCEEEECCCCHHHHH--HHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
T ss_conf 899998999389999999981488--88646998771328888--76531123366777887------541134554430
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-
Q ss_conf 8899999999999839975323324799988789889999999999960998789929999999999999999999987-
Q 000913 976 SETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1054 (1226)
Q Consensus 976 ~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGqrkrl~Ia~~L~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~l~- 1054 (1226)
. .+. +. ....+++|++++..+++++..+|++|++|||+...+ .....+..+.++.
T Consensus 72 ~-------------~~~----~~-----~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~ 127 (178)
T d1ye8a1 72 S-------------YGV----NV-----QYFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMH 127 (178)
T ss_dssp T-------------EEE----CH-----HHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHT
T ss_pred H-------------HHC----CC-----CHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCH--HHHHHHHHHHHHHC
T ss_conf 2-------------303----76-----256653201378999999740997423027773100--45799999998750
Q ss_pred HCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 399979999259758999742869899269499996799
Q 000913 1055 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1226)
Q Consensus 1055 ~~g~tvi~t~Hqps~~i~~~fD~ll~l~~gg~~vy~g~~ 1093 (1226)
+.+.++|+++|+.+ ....+|++..+.+ |+++..++.
T Consensus 128 ~~~~~il~~~h~~~--~~~~~~~i~~~~~-~~i~~v~~~ 163 (178)
T d1ye8a1 128 DPNVNVVATIPIRD--VHPLVKEIRRLPG-AVLIELTPE 163 (178)
T ss_dssp CTTSEEEEECCSSC--CSHHHHHHHTCTT-CEEEECCTT
T ss_pred CCCCEEEEEECCHH--HHHHHCEEEEEEC-CEEEEECCC
T ss_conf 57978999974477--8986365998719-999998996
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.40 E-value=2.6e-15 Score=109.93 Aligned_cols=158 Identities=14% Similarity=0.053 Sum_probs=95.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCC--EEEEECCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 9998699992899999995698999972229999682489977662--29996579998999999999999757117872
Q 000913 181 TLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQR--TAAYISQHDNHIGEMTVRETLAFSARCQGVGT 258 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~V~~nG~~~~~~~~~~--~~~yv~Q~d~~~~~lTVrEtl~f~~~~~~~~~ 258 (1226)
++|.||||||||||+++|+|.+++. .|.+...+.+......+. .+.++..........+..+...+ .
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 71 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLV--------G 71 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGG---EEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEE--------T
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCC---CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H
T ss_conf 9999899938999999998148888---6469987713288887653112336677788754113455443--------0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 25676999999886199999886799999752223367999999999099432343334644677886676689999997
Q 000913 259 RYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTMVGDEMIRGISGGQKKRVTTGEMM 338 (1226)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~vG~~~~~glSGGqrkRvsia~~l 338 (1226)
+ ..+ +.....+++|+++|..+++++
T Consensus 72 ~------------------------------------------------------~~~-~~~~~~~~~~~~~~~~l~~~~ 96 (178)
T d1ye8a1 72 S------------------------------------------------------YGV-NVQYFEELAIPILERAYREAK 96 (178)
T ss_dssp T------------------------------------------------------EEE-CHHHHHHHHHHHHHHHHHHHH
T ss_pred H------------------------------------------------------HHC-CCCHHHHHHHHHHHHHHHHHH
T ss_conf 2------------------------------------------------------303-762566532013789999997
Q ss_pred HCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCEEEECCCEEEEECC
Q ss_conf 2498534322598799999899999999999880497489999549346996629099974983999639
Q 000913 339 VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (1226)
Q Consensus 339 ~~~~~illlDEptsgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~~fD~i~lL~~G~ivy~G~ 408 (1226)
..+|+++++|||.... .....+...+.+.....+.+++++.|+ .+...++|++..+.+|+++.-++
T Consensus 97 ~~~~~vlllDE~~~~~--~~~~~~~~~l~~~l~~~~~~il~~~h~--~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 97 KDRRKVIIIDEIGKME--LFSKKFRDLVRQIMHDPNVNVVATIPI--RDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp HCTTCEEEECCCSTTG--GGCHHHHHHHHHHHTCTTSEEEEECCS--SCCSHHHHHHHTCTTCEEEECCT
T ss_pred HCCCCCEEECCCCCCC--HHHHHHHHHHHHHHCCCCCEEEEEECC--HHHHHHHCEEEEEECCEEEEECC
T ss_conf 4099742302777310--045799999998750579789999744--77898636599871999999899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.19 E-value=3.7e-10 Score=77.56 Aligned_cols=73 Identities=22% Similarity=0.231 Sum_probs=60.0
Q ss_pred CCCCHHHHHHHHHHHHHH----HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEE
Q ss_conf 878988999999999996----0998789929999999999999999999987399979999259758999742869899
Q 000913 1006 SGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1226)
Q Consensus 1006 ~~LSgGqrkrl~Ia~~L~----~~P~iL~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~ll~l 1081 (1226)
..+|.|+|+.+.++..+. .+|+++++|||-++|++.....+.+.++... .+.-||+|+|.|. +.+.+|++..+
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~-~~~QviitTHsp~--~~~~~d~~~~v 294 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHGV 294 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH--HHHHCCCEEEE
T ss_conf 10257776677777665565422674455432033579789999999999855-4887999989889--99732428999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.03 E-value=9.4e-10 Score=75.00 Aligned_cols=74 Identities=16% Similarity=0.211 Sum_probs=62.3
Q ss_pred CCCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEE
Q ss_conf 87898899999999999----60998789929999999999999999999987399979999259758999742869899
Q 000913 1006 SGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1081 (1226)
Q Consensus 1006 ~~LSgGqrkrl~Ia~~L----~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~ll~l 1081 (1226)
..+|||||.++++|.-+ ..++++++||||+++||+.....+.+.|+++...+.-+|+|||+| .+.+.+|+.+..
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCH--HHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999999728998899995878--999736617999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.91 E-value=2.5e-08 Score=66.00 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=59.7
Q ss_pred CCCCCHHHHHHHHHHHH----HHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCEE
Q ss_conf 67788667668999999----72498534322598799999899999999999880497489999549346996629099
Q 000913 321 IRGISGGQKKRVTTGEM----MVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1226)
Q Consensus 321 ~~glSGGqrkRvsia~~----l~~~~~illlDEptsgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~~fD~i~ 396 (1226)
+..+|+|||+...++.. ...++++++.|||-++|++.....+.+.|+.... +.-+++ ..|+|++.+.+|+++
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~Qvii--tTHsp~~~~~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIV--ITHNKIVMEAADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEE--ECCCTTGGGGCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC--CCEEEE--EECCHHHHHHCCCEE
T ss_conf 1102577766777776655654226744554320335797899999999998554--887999--989889997324289
Q ss_pred E--ECCC
Q ss_conf 9--7498
Q 000913 397 L--LSDG 401 (1226)
Q Consensus 397 l--L~~G 401 (1226)
. +.+|
T Consensus 293 ~v~~~~g 299 (308)
T d1e69a_ 293 GVTMVNG 299 (308)
T ss_dssp EEEESSS
T ss_pred EEEEECC
T ss_conf 9999699
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.51 E-value=1.5e-07 Score=61.12 Aligned_cols=75 Identities=17% Similarity=0.338 Sum_probs=56.6
Q ss_pred CCCCCHHHHHHHHHHHHH----HCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCEE
Q ss_conf 677886676689999997----2498534322598799999899999999999880497489999549346996629099
Q 000913 321 IRGISGGQKKRVTTGEMM----VGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDII 396 (1226)
Q Consensus 321 ~~glSGGqrkRvsia~~l----~~~~~illlDEptsgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~~fD~i~ 396 (1226)
+.-+|||||.++++|-.+ +.++++++||||.++||+.....+.+.|+.++. ..+-+| +..|.|++.+.+|.++
T Consensus 330 ~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~--~~~Q~I-~iTH~~~~~~~ad~~~ 406 (427)
T d1w1wa_ 330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFI-VISLKNTMFEKSDALV 406 (427)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEE-EECSCHHHHTTCSEEE
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEE-EEECCHHHHHHCCCEE
T ss_conf 3332230479999999999954799977999688777899999999999999728--998899-9958789997366179
Q ss_pred EE
Q ss_conf 97
Q 000913 397 LL 398 (1226)
Q Consensus 397 lL 398 (1226)
..
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.99 E-value=1e-05 Score=49.66 Aligned_cols=34 Identities=26% Similarity=0.223 Sum_probs=26.8
Q ss_pred EEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 8223523336980999982699967789952508
Q 000913 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1226)
Q Consensus 883 iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g 916 (1226)
-|+.+.+-++||+++.|.|++|+||||++.-++-
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 6888746978980899994799979999999997
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.97 E-value=2.7e-05 Score=47.00 Aligned_cols=58 Identities=9% Similarity=0.154 Sum_probs=39.3
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHH-HHHHHHHHHHCCCEEEEEECCCCHHHHHH
Q ss_conf 9999999960998789929999999999999-99999998739997999925975899974
Q 000913 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAI-VMRTVRNTVDTGRTVVCTIHQPSIDIFEA 1074 (1226)
Q Consensus 1015 rl~Ia~~L~~~P~iL~LDEPTsgLD~~~~~~-i~~~l~~l~~~g~tvi~t~Hqps~~i~~~ 1074 (1226)
++.-....+.+.+++++||...|-++..... ....+..+.+.+..+++++|.. ++.+.
T Consensus 104 ~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~l 162 (224)
T d1ewqa2 104 EVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTAL 162 (224)
T ss_dssp HHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHTC
T ss_pred HHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECH--HHHHH
T ss_conf 898775028977278554545686233200258888888862376137865202--33322
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.84 E-value=0.00048 Score=39.14 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=28.2
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 76301699957849999869999289999999569
Q 000913 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 167 iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
-|+++.+=+.||++++|.|+||+|||||+.-++-.
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 68887469789808999947999799999999972
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.84 E-value=6.3e-05 Score=44.69 Aligned_cols=50 Identities=14% Similarity=0.170 Sum_probs=35.5
Q ss_pred HHHHHCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHC-CCEEEEEECCCCH
Q ss_conf 9996099878992999999999999999-999998739-9979999259758
Q 000913 1020 VELVANPSIIFMDEPTSGLDARAAAIVM-RTVRNTVDT-GRTVVCTIHQPSI 1069 (1226)
Q Consensus 1020 ~~L~~~P~iL~LDEPTsgLD~~~~~~i~-~~l~~l~~~-g~tvi~t~Hqps~ 1069 (1226)
.....+.+++++||+..|=++.....+. ..+..+... +..+++++|....
T Consensus 115 l~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 115 LHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL 166 (234)
T ss_dssp HHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred HHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf 9745466088532223587745666789876454320454428985246877
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.66 E-value=2.5e-05 Score=47.19 Aligned_cols=50 Identities=14% Similarity=0.127 Sum_probs=33.4
Q ss_pred HCCCCCCEEECCCCCCCHHHHHHHHHHH-HHHHHCCCCEEEEEEECCHHHHHHH
Q ss_conf 2498534322598799999899999999-9998804974899995493469966
Q 000913 339 VGPALALFMDEISTGLDSSTTFQIVNCL-RQNIHINSGTAVISLLQPAPETYDL 391 (1226)
Q Consensus 339 ~~~~~illlDEptsgLDs~t~~~i~~~L-~~~~~~~~~t~ii~l~Q~~~~~~~~ 391 (1226)
.+...++++||+.+|-++.....+...+ ..+.. .+..++++.|.+ ++..+
T Consensus 112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~-~~~~~i~tTH~~--eL~~l 162 (224)
T d1ewqa2 112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYF--ELTAL 162 (224)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCCH--HHHTC
T ss_pred CCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHH-CCCCEEEEEECH--HHHHH
T ss_conf 8977278554545686233200258888888862-376137865202--33322
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.62 E-value=0.00058 Score=38.62 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=21.7
Q ss_pred HHCCCEEEEECCCC-----CCCHHHHHHHHHHHHHHHH-CCCEEEEEECC
Q ss_conf 60998789929999-----9999999999999999873-99979999259
Q 000913 1023 VANPSIIFMDEPTS-----GLDARAAAIVMRTVRNTVD-TGRTVVCTIHQ 1066 (1226)
Q Consensus 1023 ~~~P~iL~LDEPTs-----gLD~~~~~~i~~~l~~l~~-~g~tvi~t~Hq 1066 (1226)
..+|+++++|--+. --|......+++.++.++. .|++|+++.|.
T Consensus 130 ~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 130 AEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred CCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHC
T ss_conf 26765896281354226652322568999988777764479754013100
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.57 E-value=0.00032 Score=40.25 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=20.5
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 23336980999982699967789952508
Q 000913 888 SGAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1226)
Q Consensus 888 s~~i~~G~~~ai~G~sGaGKTTLl~~L~g 916 (1226)
.|-+.+|.++-|.|++|+|||+|..-++-
T Consensus 20 ~GGi~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 20 GGGFFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 68986984999991899999999999999
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.55 E-value=5.5e-05 Score=45.05 Aligned_cols=47 Identities=11% Similarity=0.055 Sum_probs=32.1
Q ss_pred HCCCCCCEEECCCCCCCHHHHHHHHHH-HHHHHHCCCCEEEEEEECCH
Q ss_conf 249853432259879999989999999-99998804974899995493
Q 000913 339 VGPALALFMDEISTGLDSSTTFQIVNC-LRQNIHINSGTAVISLLQPA 385 (1226)
Q Consensus 339 ~~~~~illlDEptsgLDs~t~~~i~~~-L~~~~~~~~~t~ii~l~Q~~ 385 (1226)
..+.+++++||+.+|-++.....+... +..+.......++++.|.+.
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 546608853222358774566678987645432045442898524687
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.53 E-value=3.5e-05 Score=46.30 Aligned_cols=24 Identities=29% Similarity=0.709 Sum_probs=13.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 809999826999677899525089
Q 000913 894 GVLTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 894 G~~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
|..++++|+||+|||||+|.|.+.
T Consensus 95 ~kt~~~~G~SGVGKSTLiN~L~~~ 118 (225)
T d1u0la2 95 GKISTMAGLSGVGKSSLLNAINPG 118 (225)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred CCEEEEECCCCCCHHHHHHHHCCH
T ss_conf 980899788987788887730535
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.40 E-value=0.0009 Score=37.41 Aligned_cols=48 Identities=10% Similarity=0.081 Sum_probs=32.1
Q ss_pred HHCCCCCCEEECCCC---C--CCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHH
Q ss_conf 724985343225987---9--999989999999999988049748999954934
Q 000913 338 MVGPALALFMDEIST---G--LDSSTTFQIVNCLRQNIHINSGTAVISLLQPAP 386 (1226)
Q Consensus 338 l~~~~~illlDEpts---g--LDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~ 386 (1226)
...+++++++|..+. + -|......+++.|+.++...+.++++ +||...
T Consensus 129 ~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~-v~H~~K 181 (274)
T d1nlfa_ 129 AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVF-LHHASK 181 (274)
T ss_dssp HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEE-EEEC--
T ss_pred HCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEH-HHHCCC
T ss_conf 52676589628135422665232256899998877776447975401-310055
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.33 E-value=8.2e-05 Score=43.94 Aligned_cols=27 Identities=44% Similarity=0.567 Sum_probs=17.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 784999986999928999999956989
Q 000913 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
.|++++|.|||||||||+.+.|+.++.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 985999988999988999999999959
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.24 E-value=7.5e-05 Score=44.20 Aligned_cols=25 Identities=36% Similarity=0.304 Sum_probs=16.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869999289999999569899
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~~ 204 (1226)
+++|.|++|||||||++.|+..+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999918999899999999999997
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.21 E-value=0.00011 Score=43.18 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=27.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf 7849999869999289999999569899997222999
Q 000913 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVT 213 (1226)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~V~ 213 (1226)
.|+.++++|+||+|||||+|+|.+...-. +|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~---T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC--------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHH---CCCCC
T ss_conf 69808997889877888877305355501---06842
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.19 E-value=9.3e-05 Score=43.62 Aligned_cols=27 Identities=33% Similarity=0.663 Sum_probs=22.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 849999869999289999999569899
Q 000913 178 GRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1226)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~~~~ 204 (1226)
|++..|+||||||||||.+.|..+.+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.15 E-value=4e-05 Score=45.93 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=11.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 809999826999677899525089
Q 000913 894 GVLTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 894 G~~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
|..+.++|+||+|||||+|.|.+.
T Consensus 97 ~~~~vl~G~SGVGKSSLiN~L~~~ 120 (231)
T d1t9ha2 97 DKTTVFAGQSGVGKSSLLNAISPE 120 (231)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHCCH
T ss_conf 564999877873487898751517
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.03 E-value=0.00012 Score=42.85 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=16.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 78499998699992899999995698
Q 000913 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
.+.+..|+|||||||||+.+.|+.++
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 87189998999989899999999986
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.02 E-value=0.00012 Score=42.89 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=15.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869999289999999569899
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~~ 204 (1226)
+.+|+|++|||||||+..|..++..
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9999809999899999999999986
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.01 E-value=0.00011 Score=43.21 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=27.0
Q ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 3523336980999982699967789952508977
Q 000913 886 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 919 (1226)
Q Consensus 886 ~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1226)
-+...++.+.-+.|.|+.||||||||++|.+...
T Consensus 158 ~l~~~v~~~~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 158 AIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp HHHHHHHHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999998378889994035662578999865301
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.98 E-value=0.00018 Score=41.83 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999986999928999999956989
Q 000913 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
+.++|.||+|||||||.+.|+.++.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.93 E-value=0.00029 Score=40.55 Aligned_cols=26 Identities=35% Similarity=0.347 Sum_probs=13.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 78499998699992899999995698
Q 000913 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
.|.++.|.|+|||||||+-++|+-++
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97699988999999999999999998
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.92 E-value=0.00036 Score=39.91 Aligned_cols=29 Identities=34% Similarity=0.477 Sum_probs=17.1
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 99957849999869999289999999569
Q 000913 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 173 ~~i~pG~~~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
|=+++|+++.|.||||||||||+.-++..
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 89859979999958999999999999999
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.91 E-value=0.00032 Score=40.21 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=18.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 784999986999928999999956989
Q 000913 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
.|.+..|+||||||||||.+.|.-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.90 E-value=0.00026 Score=40.84 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=22.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 80999982699967789952508977
Q 000913 894 GVLTALMGVSGAGKTTLMDVLAGRKT 919 (1226)
Q Consensus 894 G~~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1226)
|.++.|+||||||||||++.|..+.+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.88 E-value=0.00026 Score=40.84 Aligned_cols=25 Identities=40% Similarity=0.646 Sum_probs=18.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999986999928999999956989
Q 000913 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
.+++|.|||||||||+.+.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.87 E-value=0.00027 Score=40.70 Aligned_cols=27 Identities=37% Similarity=0.608 Sum_probs=20.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 784999986999928999999956989
Q 000913 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
+|--++|.|||||||||+.+.|+-+++
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 988899982899988999999999858
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.85 E-value=0.0003 Score=40.43 Aligned_cols=27 Identities=37% Similarity=0.369 Sum_probs=23.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 849999869999289999999569899
Q 000913 178 GRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1226)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~~~~ 204 (1226)
...+++.||||+|||||.++|++.+..
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 979998897998899999999998651
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.78 E-value=0.00013 Score=42.63 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=27.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf 7849999869999289999999569899997222999
Q 000913 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVT 213 (1226)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~V~ 213 (1226)
.|+.++++|+||+|||||+|+|.|...-. +|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~---t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHH---HCCCC
T ss_conf 35649998778734878987515176764---03555
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.77 E-value=8.9e-05 Score=43.73 Aligned_cols=26 Identities=42% Similarity=0.645 Sum_probs=18.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 49999869999289999999569899
Q 000913 179 RLTLLLGPPSSGKTTLLLALAGKLDP 204 (1226)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~~~ 204 (1226)
+.+.|.||||+|||||++.++..+..
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~ 27 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKS 27 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 69999889997199999999999997
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.74 E-value=0.00043 Score=39.41 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=12.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999826999677899525089
Q 000913 896 LTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
.++|+|++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.72 E-value=0.0004 Score=39.66 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=11.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499998699992899999995698
Q 000913 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
+++.|.|+|||||||+.+.|+.++
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 599998999999899999999972
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.72 E-value=0.00056 Score=38.73 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=18.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999869999289999999569
Q 000913 179 RLTLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
+++.|.||||||||||.+.|...
T Consensus 3 klIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999899999999999999995
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.69 E-value=0.00054 Score=38.83 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999928999999956989
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
+++|+||+|||||||++.|...+.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.68 E-value=0.0016 Score=35.91 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=16.7
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 99957849999869999289999999569
Q 000913 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 173 ~~i~pG~~~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
|=+++|+++.|.|+||+|||+|..-++-.
T Consensus 29 GGl~~G~l~~i~G~~G~GKT~~~l~~a~~ 57 (258)
T d2i1qa2 29 GGLESQSVTEFAGVFGSGKTQIMHQSCVN 57 (258)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 98628859999917999989999999999
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.67 E-value=0.00062 Score=38.45 Aligned_cols=27 Identities=41% Similarity=0.602 Sum_probs=21.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 578499998699992899999995698
Q 000913 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 176 ~pG~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
++|-.+.|+|||||||||..+.|+-++
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.66 E-value=2.8e-05 Score=46.90 Aligned_cols=34 Identities=24% Similarity=0.196 Sum_probs=23.3
Q ss_pred EECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 63016999578499998699992899999995698
Q 000913 168 LKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 168 L~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
+++.++.+.+| +++|+|||||||||+|.+|.-.+
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 70279974998-08998899998799999999996
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.65 E-value=0.0097 Score=30.95 Aligned_cols=26 Identities=42% Similarity=0.671 Sum_probs=15.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 78499998699992899999995698
Q 000913 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
+.+-+++.||||+|||++.++||..+
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHC
T ss_conf 88867866899888228999999982
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.64 E-value=0.0037 Score=33.57 Aligned_cols=53 Identities=25% Similarity=0.381 Sum_probs=36.4
Q ss_pred HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEE
Q ss_conf 99999960998789929999999999999999999987399979999259758999742869
Q 000913 1017 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1078 (1226)
Q Consensus 1017 ~Ia~~L~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~l 1078 (1226)
.+..+|=.+|++|++.|.. |..++...+ +.+.+|..|+.|.|-.+ .+...+|+
T Consensus 219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~--a~~~~~Rl 271 (401)
T d1p9ra_ 219 GLRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT--AVGAVTRL 271 (401)
T ss_dssp HHHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS--SHHHHHHH
T ss_pred HHHHHHHHCCCEEEECCCC---CHHHHHHHH----HHHHCCCEEEEEECCCC--HHHHHHHH
T ss_conf 9999984138889845768---759999999----99724985899833676--67665432
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.64 E-value=0.00049 Score=39.09 Aligned_cols=22 Identities=45% Similarity=0.533 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999826999677899525089
Q 000913 896 LTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
+++|+|++|||||||++.|+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999918999899999999999
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.64 E-value=0.00055 Score=38.78 Aligned_cols=23 Identities=52% Similarity=0.582 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999928999999956989
Q 000913 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
++|+|||||||||+.+.|+-++.
T Consensus 7 I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 98989999998999999999979
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.64 E-value=0.00056 Score=38.72 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=22.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 98099998269996778995250897
Q 000913 893 PGVLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 893 ~G~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
.|.++.|+||||+|||||++.|.-..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 98099999999999999999998639
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.62 E-value=0.00051 Score=39.00 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499998699992899999995698
Q 000913 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
.++.|+|||||||||+.+.|+.++
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999999899999999985
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.59 E-value=0.00068 Score=38.17 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499998699992899999995698
Q 000913 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
.+++|+|||||||||+.+.|+-.+
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 489998999998899999999997
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.58 E-value=0.0008 Score=37.75 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=15.4
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 995784999986999928999999956
Q 000913 174 VIKPGRLTLLLGPPSSGKTTLLLALAG 200 (1226)
Q Consensus 174 ~i~pG~~~~ilGp~GsGKSTLL~~LaG 200 (1226)
=+++|+++.|.||||||||||..-++-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 986996999983899988999999999
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.57 E-value=0.00032 Score=40.23 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=21.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 78499998699992899999995698
Q 000913 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
.+.++.|+|||||||||+.+.|+.++
T Consensus 7 ~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 7 KSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 78289998999998799999999986
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.55 E-value=0.0008 Score=37.75 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 98099998269996778995250897
Q 000913 893 PGVLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 893 ~G~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
.|.++.|.|++||||||+.+.|+.+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.51 E-value=0.00057 Score=38.66 Aligned_cols=26 Identities=31% Similarity=0.278 Sum_probs=20.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 84999986999928999999956989
Q 000913 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
.-.++|.||||||||||++.|...+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 32897438999989999999999997
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.47 E-value=3.3e-05 Score=46.45 Aligned_cols=33 Identities=27% Similarity=0.245 Sum_probs=27.3
Q ss_pred EEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 8223523336980999982699967789952508
Q 000913 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1226)
Q Consensus 883 iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g 916 (1226)
.+.+.++.+.+| ++.|+|+|||||||+|++|.-
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHH
T ss_conf 870279974998-089988999987999999999
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.46 E-value=0.00054 Score=38.84 Aligned_cols=25 Identities=44% Similarity=0.501 Sum_probs=14.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9809999826999677899525089
Q 000913 893 PGVLTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 893 ~G~~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
.|.++-|+|++||||||+-+.|+.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9969998899999999999999999
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.45 E-value=0.0013 Score=36.45 Aligned_cols=23 Identities=35% Similarity=0.361 Sum_probs=11.9
Q ss_pred EEECCEEEEEECCCCCCHHHHHH
Q ss_conf 99578499998699992899999
Q 000913 174 VIKPGRLTLLLGPPSSGKTTLLL 196 (1226)
Q Consensus 174 ~i~pG~~~~ilGp~GsGKSTLL~ 196 (1226)
=+++|++++|.||||||||||..
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~l 54 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAH 54 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHH
T ss_conf 95588799998589898899999
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.43 E-value=0.0011 Score=36.97 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=21.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 49999869999289999999569899
Q 000913 179 RLTLLLGPPSSGKTTLLLALAGKLDP 204 (1226)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~~~ 204 (1226)
++++|.|++||||||+.+.|+.++..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 88999899998989999999999987
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.42 E-value=0.00085 Score=37.56 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=22.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 784999986999928999999956989
Q 000913 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
|+.-++++||||+|||.|.++||..+.
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 986699989999888899999862132
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.38 E-value=0.0011 Score=36.81 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=16.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 784999986999928999999956
Q 000913 177 PGRLTLLLGPPSSGKTTLLLALAG 200 (1226)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG 200 (1226)
.-++++++|+|||||||+.+.++.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 998999989999989999999997
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.38 E-value=0.00054 Score=38.82 Aligned_cols=38 Identities=26% Similarity=0.417 Sum_probs=26.9
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCC-CCEEEEEEEECCC
Q ss_conf 0999982699967789952508977-8637989999593
Q 000913 895 VLTALMGVSGAGKTTLMDVLAGRKT-GGYITGNITISGY 932 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~g~~~-~~~~~G~i~i~g~ 932 (1226)
.+++|+|++|||||||+..|..+.. .|..-+.|.-+++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~ 40 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 099998099998999999999999867983799983167
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.37 E-value=0.001 Score=37.13 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999995698
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
.++|+|+||+|||||+++|.|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.35 E-value=0.0012 Score=36.58 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999995698
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
.+.|+|||||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.35 E-value=0.0011 Score=36.94 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999928999999956989
Q 000913 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
+.|+|||||||||+.+.|+-++.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999998999999999879
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.34 E-value=0.001 Score=37.14 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999995698
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
.++|+|+|++|||||+++|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.33 E-value=0.0011 Score=36.88 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=17.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999289999999569
Q 000913 180 LTLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
.++|+|+|++|||||++.|.+.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.32 E-value=0.001 Score=37.06 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999995698
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
.+.|+|||||||||+.+.|+-++
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.30 E-value=0.0014 Score=36.19 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=10.5
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999826999677899525089
Q 000913 897 TALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 897 ~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
++|+|+.|+|||||++.|+|.
T Consensus 3 V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 3 VLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999899999999677
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.27 E-value=0.00097 Score=37.21 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999928999999956989
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
.+.|.||+||||||+-+.|+-++.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 499989999999999999999969
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.26 E-value=0.0014 Score=36.18 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=23.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 698099998269996778995250897
Q 000913 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 892 ~~G~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
..+.++.|+|++||||||+.+.|+.+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.26 E-value=0.0089 Score=31.17 Aligned_cols=22 Identities=55% Similarity=0.860 Sum_probs=14.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699992899999995698
Q 000913 181 TLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
+++.||||+|||+|.++|+..+
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 8876689888359999999873
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.22 E-value=0.0014 Score=36.17 Aligned_cols=24 Identities=38% Similarity=0.333 Sum_probs=15.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999928999999956989
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
+++|-||+|||||||.+.|+-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.22 E-value=0.00083 Score=37.65 Aligned_cols=20 Identities=35% Similarity=0.692 Sum_probs=11.6
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99982699967789952508
Q 000913 897 TALMGVSGAGKTTLMDVLAG 916 (1226)
Q Consensus 897 ~ai~G~sGaGKTTLl~~L~g 916 (1226)
+||+|++++|||||++.|+|
T Consensus 4 VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEE
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99989999879999999968
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=96.22 E-value=0.0014 Score=36.24 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=20.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8499998699992899999995698
Q 000913 178 GRLTLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
.-.++|.||||+|||||+..|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 1598611799888999999999987
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.21 E-value=0.0011 Score=36.99 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999995698
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
.++|+|||||||||+-+.|+-++
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 69998899998799999999997
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.21 E-value=0.0014 Score=36.25 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999995698
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
.++|+|.+|+|||||+|+|.|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.21 E-value=0.0013 Score=36.47 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=17.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999986999928999999956989
Q 000913 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
+.+.|+||+|+||+||++.|..+.+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7199999899999999999997097
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.20 E-value=0.0011 Score=36.84 Aligned_cols=25 Identities=32% Similarity=0.499 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869999289999999569899
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~~ 204 (1226)
-+.|+|||||||+||++.|+...+.
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~~ 27 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 6999899999989999999974886
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.15 E-value=0.0016 Score=35.91 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999928999999956989
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
.+.|+|||||||||+.+.|+-++.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899988999987999999999879
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.15 E-value=0.0016 Score=35.83 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999928999999956989
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
-++|+|.+|+|||||+|+|.|.-.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 799989999978999999958886
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.14 E-value=0.002 Score=35.23 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=16.4
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 333698099998269996778995250
Q 000913 889 GAFRPGVLTALMGVSGAGKTTLMDVLA 915 (1226)
Q Consensus 889 ~~i~~G~~~ai~G~sGaGKTTLl~~L~ 915 (1226)
|-+.+|.++-|.|++|+|||++..-++
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 997689799998899887889999999
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.12 E-value=0.0017 Score=35.69 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=30.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 9999869999289999999569899997222999968248997766229996579998999
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHIGE 240 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~~~ 240 (1226)
+++|.|++||||||+.+.|...+... .....+..++++|-|.+.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~-----------------~~~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRW-----------------PEHRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTS-----------------TTCCCEEEEEGGGGBCCH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHH-----------------CCCCCEEEEEEEEEECCC
T ss_conf 99996899998768999999997304-----------------689965999521568984
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.12 E-value=0.0019 Score=35.40 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999986999928999999956989
Q 000913 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
.+++++|.||||||||.+.|+..+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.12 E-value=0.0018 Score=35.51 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=12.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999826999677899525089
Q 000913 896 LTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
.+||+|..|+|||||++.|.|.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999778
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.11 E-value=0.0015 Score=35.98 Aligned_cols=22 Identities=45% Similarity=0.690 Sum_probs=11.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699992899999995698
Q 000913 181 TLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
.++.||||+||||+.++||..+
T Consensus 55 lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 55 AMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998799998889999999998
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.05 E-value=0.002 Score=35.27 Aligned_cols=28 Identities=25% Similarity=0.525 Sum_probs=23.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 6980999982699967789952508977
Q 000913 892 RPGVLTALMGVSGAGKTTLMDVLAGRKT 919 (1226)
Q Consensus 892 ~~G~~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1226)
++|-.+.|+|++||||||+.+.|+....
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.05 E-value=0.0021 Score=35.10 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=24.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 698099998269996778995250897
Q 000913 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 892 ~~G~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
..|.++.|+|++||||||+-+.|+.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.02 E-value=0.0013 Score=36.41 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999928999999956989
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
+++|.|||||||+|+-+.|+.++.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.02 E-value=0.002 Score=35.22 Aligned_cols=22 Identities=59% Similarity=0.877 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699992899999995698
Q 000913 181 TLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
..|+|||||||||+-+.|+..+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999799999999998
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.01 E-value=0.0017 Score=35.64 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=14.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999928999999956989
Q 000913 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
+.|+||||||||||.+.|+...+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.01 E-value=0.002 Score=35.19 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699992899999995698
Q 000913 181 TLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
+.|+|||||||||+.+.|+-++
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999999899999999996
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.00 E-value=0.002 Score=35.23 Aligned_cols=27 Identities=44% Similarity=0.592 Sum_probs=21.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 784999986999928999999956989
Q 000913 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
|-.-+++.||||+|||++.++||..+.
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 980799889699988999999862010
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.99 E-value=0.0026 Score=34.53 Aligned_cols=25 Identities=40% Similarity=0.759 Sum_probs=17.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8099998269996778995250897
Q 000913 894 GVLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 894 G~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
|-.++++|+.++|||||++.|.|..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899998999998999999996888
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.98 E-value=0.0019 Score=35.38 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999928999999956989
Q 000913 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
+.++|||||||||..+.|+-++.
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99987999998999999999869
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.98 E-value=0.0022 Score=35.03 Aligned_cols=22 Identities=45% Similarity=0.540 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699992899999995698
Q 000913 181 TLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
+.|+|+|||||||+.+.||..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.96 E-value=0.0017 Score=35.76 Aligned_cols=33 Identities=24% Similarity=0.453 Sum_probs=22.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 999982699967789952508977863798999
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRKTGGYITGNIT 928 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~ 928 (1226)
++++.|+.|||||||++.|......+..-+-|.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn 34 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 34 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 899991899839999999999884387689996
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.96 E-value=0.0026 Score=34.48 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=19.9
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099998269996778995250897
Q 000913 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
.-+-|.||+|+|||++.+.|+...
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCCCHHHHHHHHHC
T ss_conf 867866899888228999999982
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.95 E-value=0.0015 Score=36.05 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699992899999995698
Q 000913 181 TLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
++|+|+|++|||||++.|+|..
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999987999999996899
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.94 E-value=0.0015 Score=35.97 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=16.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99998269996778995250897
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
-+-|.||+|+|||+|.+.+++..
T Consensus 43 giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 43 GVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp EEEEBCCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCHHHHHHHHHHH
T ss_conf 57887899876304778878771
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.94 E-value=0.002 Score=35.26 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 09999826999677899525089
Q 000913 895 VLTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
-++||-|++|||||||.+.|+..
T Consensus 23 ~iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 23 LVLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89997898878999999999998
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.94 E-value=0.0028 Score=34.37 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=13.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999826999677899525089
Q 000913 896 LTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
.++|+|.+|+|||||++.|.|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.93 E-value=0.0025 Score=34.59 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999928999999956989
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
.++|-|||||||||..+.|+-++.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.93 E-value=0.0015 Score=35.99 Aligned_cols=21 Identities=38% Similarity=0.611 Sum_probs=11.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999289999999569
Q 000913 181 TLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
++|+|++++|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.92 E-value=0.0018 Score=35.46 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099998269996778995250897
Q 000913 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
..++|.|++|+|||||.+.|+...
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.91 E-value=0.0029 Score=34.27 Aligned_cols=22 Identities=36% Similarity=0.693 Sum_probs=14.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999826999677899525089
Q 000913 896 LTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
.++|+|.+++|||||++.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.90 E-value=0.0031 Score=34.05 Aligned_cols=162 Identities=15% Similarity=0.025 Sum_probs=74.2
Q ss_pred EECC-CCCCCCCEEEEEECCCCCCHHHHHHHHCC--CCCCCEEEEEEEECCCCCCHHHHCCEEEEEECCCCCCCCCCHHH
Q ss_conf 2235-23336980999982699967789952508--97786379899995934883322001668504898999999999
Q 000913 884 LNGV-SGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTIYE 960 (1226)
Q Consensus 884 L~~v-s~~i~~G~~~ai~G~sGaGKTTLl~~L~g--~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~d~~~~~lTv~E 960 (1226)
|+++ .|-+++|+++-|.|++|+|||+|..-++. ...++. .+ .|+.- ..+..+
T Consensus 15 LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~---~~----------------~~~s~------e~~~~~ 69 (242)
T d1tf7a1 15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDE---PG----------------VFVTF------EETPQD 69 (242)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCC---CE----------------EEEES------SSCHHH
T ss_pred HHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCC---CC----------------CCCCC------CCCHHH
T ss_conf 988556899698399999479999999999999999985688---74----------------20126------679999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHH--HCCCEEEEECCCCC
Q ss_conf 999988730699999889999999999983997532332479998878988-999999999996--09987899299999
Q 000913 961 SLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTE-QRKRLTIAVELV--ANPSIIFMDEPTSG 1037 (1226)
Q Consensus 961 ~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgG-qrkrl~Ia~~L~--~~P~iL~LDEPTsg 1037 (1226)
......... ... .+..+.............. ........ ....+.-....+ .+|+++++|--+.-
T Consensus 70 ~~~~~~~~~----~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l 137 (242)
T d1tf7a1 70 IIKNARSFG----WDL-------AKLVDEGKLFILDASPDPE-GQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSV 137 (242)
T ss_dssp HHHHHGGGT----CCH-------HHHHHTTSEEEEECCCCSS-CCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTT
T ss_pred HHHHHHHCC----CCH-------HHHHHHCCHHHHHHCCCHH-HHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999849----984-------8988714302444210335-4444302458999999999988631222002078899
Q ss_pred C----C-HHHHHHHHHHHHHHHHCCCEEEEEECCCCH--------HHHHHCCEEEEEE
Q ss_conf 9----9-999999999999987399979999259758--------9997428698992
Q 000913 1038 L----D-ARAAAIVMRTVRNTVDTGRTVVCTIHQPSI--------DIFEAFDELFLMK 1082 (1226)
Q Consensus 1038 L----D-~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~--------~i~~~fD~ll~l~ 1082 (1226)
. + ......+...++...+.++|++++.|.... .....+|.++.+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 138 FQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp STTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 8760572678999999999998639716884210255422246762335362999988
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.89 E-value=0.0024 Score=34.70 Aligned_cols=25 Identities=48% Similarity=0.690 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869999289999999569899
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~~ 204 (1226)
-+++.||||+||||+.++|+..+..
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 4898799997388999999850388
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.89 E-value=0.0025 Score=34.63 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999928999999956989
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
.+.++|+|||||||+-+.||-++.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 889988999988999999999949
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.89 E-value=0.0019 Score=35.38 Aligned_cols=44 Identities=20% Similarity=0.382 Sum_probs=32.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCC
Q ss_conf 9999869999289999999569899997222999968248997766229996579
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQH 234 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~ 234 (1226)
=++++||+|+|||-|.+.||+.++. -=+..++... ..+|||..+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V-----PFv~~daT~f------TeaGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKF------TEVGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEGGGG------C----CCCC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC-----CEEEEECCEE------EECCEEECC
T ss_conf 4799899998899999999987389-----8898625511------411111044
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.87 E-value=0.0034 Score=33.81 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999995698
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
-++++|++|+|||||+++|.|.-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999997787
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.87 E-value=0.0023 Score=34.81 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99998269996778995250897
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
-++|+|++|+|||||++.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.87 E-value=0.0016 Score=35.91 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 49999869999289999999569899
Q 000913 179 RLTLLLGPPSSGKTTLLLALAGKLDP 204 (1226)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~~~ 204 (1226)
++..|.|++||||||+.+.|+.++..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999898998989999999999987
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.85 E-value=0.0025 Score=34.61 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999289999999569
Q 000913 180 LTLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
-++|+|++|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999809
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.85 E-value=0.002 Score=35.24 Aligned_cols=23 Identities=39% Similarity=0.549 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99998269996778995250897
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
-+-+.||.|+|||+|.+.|+...
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 48876689888359999999873
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.83 E-value=0.0021 Score=35.09 Aligned_cols=23 Identities=43% Similarity=0.638 Sum_probs=13.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999995698
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
-+++.||||+|||+|.++++...
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCHHHHHHHHHHH
T ss_conf 46876699888308999999874
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.82 E-value=0.0028 Score=34.35 Aligned_cols=22 Identities=59% Similarity=0.819 Sum_probs=12.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699992899999995698
Q 000913 181 TLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
.++.||||+||||+.++++..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9997899974879999999998
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.82 E-value=0.003 Score=34.12 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999928999999956989
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
+++|-|++||||||+.+.|+..+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989997879999999999964
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.82 E-value=0.0019 Score=35.39 Aligned_cols=23 Identities=39% Similarity=0.468 Sum_probs=14.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999995698
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
-++|+|++|+|||||++.|.+..
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996788
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=95.81 E-value=0.0025 Score=34.65 Aligned_cols=23 Identities=52% Similarity=0.778 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999928999999956989
Q 000913 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
+++.||||+||||+.+++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89889799878889999999849
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.81 E-value=0.0026 Score=34.48 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099998269996778995250897
Q 000913 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
..+.|+||||+||+||++-|....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 719999989999999999999709
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.80 E-value=0.0023 Score=34.90 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 99982699967789952508977
Q 000913 897 TALMGVSGAGKTTLMDVLAGRKT 919 (1226)
Q Consensus 897 ~ai~G~sGaGKTTLl~~L~g~~~ 919 (1226)
+.|+||||||||||++.|+....
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.79 E-value=0.0032 Score=33.93 Aligned_cols=25 Identities=44% Similarity=0.728 Sum_probs=21.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8499998699992899999995698
Q 000913 178 GRLTLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
|=-++++|++++|||||++.|.|.-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899998999998999999996888
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.76 E-value=0.0017 Score=35.62 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999928999999956989
Q 000913 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
+.++|++||||||+-+.|+.++.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89988999988999999999849
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.73 E-value=0.0029 Score=34.23 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=19.4
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099998269996778995250897
Q 000913 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
-.+||+|.+|+|||||+|.|.|..
T Consensus 57 l~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 57 LNVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 179998999997899999995888
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=95.72 E-value=0.0045 Score=33.01 Aligned_cols=42 Identities=24% Similarity=0.289 Sum_probs=30.2
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHCCCC--CCCEEEEEEEECCCC
Q ss_conf 333698099998269996778995250897--786379899995934
Q 000913 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGNITISGYP 933 (1226)
Q Consensus 889 ~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~--~~~~~~G~i~i~g~~ 933 (1226)
|-+.+|.++-|.|++|+|||||.-.++.-. .++ -.+++|...
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~---~~vyidtE~ 92 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDAEH 92 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEEESSC
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC---EEEEECCCC
T ss_conf 99667358998057774789999999999870898---799986544
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.71 E-value=0.0031 Score=34.08 Aligned_cols=21 Identities=33% Similarity=0.298 Sum_probs=13.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999289999999569
Q 000913 181 TLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
++|+|++.+|||||+++|.+.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999907787099999999974
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=95.70 E-value=0.039 Score=27.13 Aligned_cols=42 Identities=26% Similarity=0.365 Sum_probs=29.3
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHCCCCC-CCEEEEEEEECCC
Q ss_conf 3336980999982699967789952508977-8637989999593
Q 000913 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-GGYITGNITISGY 932 (1226)
Q Consensus 889 ~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~-~~~~~G~i~i~g~ 932 (1226)
|-++.|.++-+-|++|+|||||...++.... .| ...++||..
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~aqk~g--~~v~yiDtE 94 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQKAG--GTCAFIDAE 94 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESS
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC--CEEEEEECC
T ss_conf 9866754789805876522799999999997079--989999887
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.69 E-value=0.0033 Score=33.84 Aligned_cols=24 Identities=25% Similarity=0.595 Sum_probs=21.7
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099998269996778995250897
Q 000913 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
-.++|+|.+|+|||||+|.|.|..
T Consensus 33 l~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 33 LTILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 489998999986999999985898
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.67 E-value=0.003 Score=34.16 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999289999999569
Q 000913 181 TLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
++|+|++|+|||||++.|.+.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999659
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.65 E-value=0.003 Score=34.14 Aligned_cols=26 Identities=42% Similarity=0.594 Sum_probs=12.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 78499998699992899999995698
Q 000913 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
|+-++++.||+||||||+|.++...+
T Consensus 157 ~~GliLvtGpTGSGKSTTl~~~l~~~ 182 (401)
T d1p9ra_ 157 PHGIILVTGPTGSGKSTTLYAGLQEL 182 (401)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHCEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 10548987678777447799986662
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.64 E-value=0.0031 Score=34.03 Aligned_cols=22 Identities=45% Similarity=0.558 Sum_probs=15.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699992899999995698
Q 000913 181 TLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
++++|++++|||||++.|.+..
T Consensus 3 I~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999995899
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.61 E-value=0.0039 Score=33.40 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=15.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 78499998699992899999995698
Q 000913 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
.++.++|.||+|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.60 E-value=0.003 Score=34.13 Aligned_cols=21 Identities=48% Similarity=0.623 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999826999677899525089
Q 000913 897 TALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 897 ~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
+.|+||||+|||||++.|+..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999999999999999999974
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.58 E-value=0.0038 Score=33.50 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=14.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699992899999995698
Q 000913 181 TLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
++++|++|+|||||++.|.+..
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHCCCC
T ss_conf 9999999989999999980899
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.57 E-value=0.0035 Score=33.73 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 09999826999677899525089
Q 000913 895 VLTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
-++||-|++||||||+-+.|+..
T Consensus 3 ~iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 3 FLIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999899978799999999999
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.55 E-value=0.0041 Score=33.25 Aligned_cols=29 Identities=31% Similarity=0.499 Sum_probs=26.1
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 23336980999982699967789952508
Q 000913 888 SGAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1226)
Q Consensus 888 s~~i~~G~~~ai~G~sGaGKTTLl~~L~g 916 (1226)
.|-+.+|+++-|.||+|+|||||..-++.
T Consensus 17 ~GGi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 17 QGGIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp TTSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 58985997999995899999999999999
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.55 E-value=0.0047 Score=32.94 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=21.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8099998269996778995250897
Q 000913 894 GVLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 894 G~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
.-.++|+|++|+|||||++.|.+..
T Consensus 13 ~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 13 TGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 7789999999989899999996788
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.53 E-value=0.0032 Score=33.95 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=26.6
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 9578499998699992899999995698999
Q 000913 175 IKPGRLTLLLGPPSSGKTTLLLALAGKLDPT 205 (1226)
Q Consensus 175 i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~ 205 (1226)
++.+.-++|.||+||||||||++|.+..++.
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHHCCCEEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 9837888999403566257899986530145
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.51 E-value=0.0044 Score=33.08 Aligned_cols=22 Identities=41% Similarity=0.717 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999289999999569
Q 000913 180 LTLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
.++++|.+++|||||+++|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.50 E-value=0.004 Score=33.36 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999928999999956989
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
.++|+|++|+|||||++.|.|...
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999989999999967775
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.50 E-value=0.0019 Score=35.33 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=17.2
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099998269996778995250897
Q 000913 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
-.++|+|++++|||||++.|.+..
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 789998899998999999985898
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=95.50 E-value=0.0016 Score=35.77 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=22.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869999289999999569899
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~~ 204 (1226)
-+++.||||+|||||++.+++.+++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 0899889985299999999873798
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.49 E-value=0.0051 Score=32.66 Aligned_cols=28 Identities=32% Similarity=0.287 Sum_probs=22.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 7849999869999289999999569899
Q 000913 177 PGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1226)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~~~ 204 (1226)
+...++|.||||+||||+++.|+..+..
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 8881688898999899999999999754
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.49 E-value=0.0055 Score=32.46 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=15.4
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 6980999982699967789952508
Q 000913 892 RPGVLTALMGVSGAGKTTLMDVLAG 916 (1226)
Q Consensus 892 ~~G~~~ai~G~sGaGKTTLl~~L~g 916 (1226)
+.|.++-+.|.+||||||+-+.|+.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9986999989999998999999998
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.48 E-value=0.015 Score=29.82 Aligned_cols=34 Identities=29% Similarity=0.207 Sum_probs=20.9
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 76301699957849999869999289999999569
Q 000913 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 167 iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
.+|.... .-.|.-+++.|+||+|||||...|..+
T Consensus 5 ~~H~~~v-~~~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 5 QIHGVLL-EVFGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEE-EETTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred EEEEEEE-EECCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 1789999-999999999818999989999999985
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.44 E-value=0.0048 Score=32.88 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999995698
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
.++|+|++|+|||||++.|.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.42 E-value=0.0034 Score=33.79 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999982699967789952508977
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRKT 919 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1226)
.++|+|++|+|||||++.|.+...
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~~ 28 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDSV 28 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999889999999967999
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.41 E-value=0.0044 Score=33.08 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499998699992899999995698
Q 000913 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
-.++|+|+|++|||||+++|.+.-
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 789998899998999999985898
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.41 E-value=0.0049 Score=32.81 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 80999982699967789952508977
Q 000913 894 GVLTALMGVSGAGKTTLMDVLAGRKT 919 (1226)
Q Consensus 894 G~~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1226)
..++.|.|++||||||+.+.|+....
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.40 E-value=0.0043 Score=33.18 Aligned_cols=21 Identities=43% Similarity=0.567 Sum_probs=13.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999289999999569
Q 000913 181 TLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
++++|++|+|||||++.+.+.
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998999999999679
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.39 E-value=0.0046 Score=32.95 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.1
Q ss_pred EEEEEECCCCCCHHHHHHHHCC
Q ss_conf 0999982699967789952508
Q 000913 895 VLTALMGVSGAGKTTLMDVLAG 916 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~g 916 (1226)
.++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999999999999999
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.38 E-value=0.0029 Score=34.22 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9998269996778995250897
Q 000913 897 TALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 897 ~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
+||+|.+++|||||++.|.|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.34 E-value=0.0049 Score=32.81 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=16.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999289999999569
Q 000913 180 LTLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
-++++|.+|||||||++.|.+.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999668
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.29 E-value=0.004 Score=33.36 Aligned_cols=25 Identities=32% Similarity=0.256 Sum_probs=19.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999986999928999999956989
Q 000913 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
-+++|-|+.||||||+++.|+..+.
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1999889999888999999998707
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.28 E-value=0.0053 Score=32.58 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 0999982699967789952508977
Q 000913 895 VLTALMGVSGAGKTTLMDVLAGRKT 919 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1226)
.++.|.||+||||||+.+.|+....
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.26 E-value=0.0038 Score=33.51 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=19.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 84999986999928999999956989
Q 000913 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
+++++|-|+.||||||+++.|+..+.
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98899987888779999999999973
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.23 E-value=0.0037 Score=33.58 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099998269996778995250897
Q 000913 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
-++||.|++||||||+-+.|....
T Consensus 81 ~iIGIaG~sgSGKSTla~~L~~lL 104 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 899996899998768999999997
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.22 E-value=0.0058 Score=32.33 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999289999999569
Q 000913 180 LTLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
.++|+|++.||||||+++|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.19 E-value=0.0062 Score=32.18 Aligned_cols=22 Identities=50% Similarity=0.901 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699992899999995698
Q 000913 181 TLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
.++-||||+||||+.++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.18 E-value=0.024 Score=28.47 Aligned_cols=22 Identities=45% Similarity=0.466 Sum_probs=13.4
Q ss_pred EEEEEECCCCCCHHHHHHHHCC
Q ss_conf 0999982699967789952508
Q 000913 895 VLTALMGVSGAGKTTLMDVLAG 916 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~g 916 (1226)
.++.++||+|+||||.+-=||.
T Consensus 11 ~vi~lvGp~GvGKTTTiaKLA~ 32 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAAKLAL 32 (207)
T ss_dssp EEEEEECCTTTTHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 6899989999988999999999
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.17 E-value=0.0051 Score=32.72 Aligned_cols=23 Identities=43% Similarity=0.520 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99998269996778995250897
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
.+.|+|++||||||+.+.|+-+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.15 E-value=0.0069 Score=31.86 Aligned_cols=26 Identities=35% Similarity=0.397 Sum_probs=12.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 78499998699992899999995698
Q 000913 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
.|.+++|-|+.||||||+.+.|+..+
T Consensus 2 rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 2 RGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 80599998998889999999999999
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.15 E-value=0.0051 Score=32.66 Aligned_cols=23 Identities=35% Similarity=0.380 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99998269996778995250897
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
.+.|.||+|+|||||+..++...
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899971999999999999
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.08 E-value=0.0034 Score=33.81 Aligned_cols=28 Identities=36% Similarity=0.349 Sum_probs=24.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 7849999869999289999999569899
Q 000913 177 PGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1226)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~~~ 204 (1226)
.|.++.+.|+|||||||+-+.|+-++..
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~ 45 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLVC 45 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9969998899999999999999999974
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=95.04 E-value=0.015 Score=29.69 Aligned_cols=30 Identities=27% Similarity=0.210 Sum_probs=19.6
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 699957849999869999289999999569
Q 000913 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 172 s~~i~pG~~~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
+...-.|.-+++.|+||+|||||...|..+
T Consensus 8 ~~v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 8 VLVDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999999808999989999999985
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=95.04 E-value=0.0039 Score=33.40 Aligned_cols=25 Identities=48% Similarity=0.474 Sum_probs=13.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8499998699992899999995698
Q 000913 178 GRLTLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
++.+++.||||+|||++.++|++.+
T Consensus 154 ~~~~~~~g~~~~gk~~~~~~~~~~~ 178 (362)
T d1svma_ 154 KRYWLFKGPIDSGKTTLAAALLELC 178 (362)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 6769998999988899999999985
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.98 E-value=0.0069 Score=31.85 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099998269996778995250897
Q 000913 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
.+++|.|+.||||||+.+.|+.+.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l 25 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNL 25 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 889998999989899999999999
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.95 E-value=0.068 Score=25.62 Aligned_cols=32 Identities=31% Similarity=0.539 Sum_probs=25.7
Q ss_pred EECE-EEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 6301-6999578499998699992899999995
Q 000913 168 LKDV-SGVIKPGRLTLLLGPPSSGKTTLLLALA 199 (1226)
Q Consensus 168 L~~v-s~~i~pG~~~~ilGp~GsGKSTLL~~La 199 (1226)
|+++ .|=+++|+++.|.|+||+|||+|..-++
T Consensus 15 LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 988556899698399999479999999999999
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.95 E-value=0.01 Score=30.81 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=26.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 78499998699992899999995698999972229999682
Q 000913 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGH 217 (1226)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~V~~nG~ 217 (1226)
|....+++||+|+|||.|.+.||..+. .--|.+|..
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~-----~~~i~~d~s 86 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMS 86 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGG
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCC-----CCEEEECCC
T ss_conf 765899977875006999999986336-----770674154
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=94.93 E-value=0.017 Score=29.36 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999289999999569
Q 000913 180 LTLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
-++|+|.|.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 7999789999899999999778
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.91 E-value=0.0083 Score=31.37 Aligned_cols=22 Identities=41% Similarity=0.555 Sum_probs=14.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699992899999995698
Q 000913 181 TLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
.++-||||+||||+.++++..+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHH
T ss_conf 9998899987054699999997
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.91 E-value=0.0097 Score=30.94 Aligned_cols=24 Identities=38% Similarity=0.583 Sum_probs=16.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 809999826999677899525089
Q 000913 894 GVLTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 894 G~~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
+..++++||+|+||||.+-=||.+
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 779999899999889999999999
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=94.88 E-value=0.013 Score=30.09 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=21.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 698099998269996778995250897
Q 000913 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 892 ~~G~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
.|...+-+.||.|+|||.|.+.|++..
T Consensus 121 ~~~g~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 121 YASGMVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EESEEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 688638887799850889999999986
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.86 E-value=0.0085 Score=31.30 Aligned_cols=20 Identities=30% Similarity=0.341 Sum_probs=12.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998699992899999995
Q 000913 180 LTLLLGPPSSGKTTLLLALA 199 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~La 199 (1226)
+.+|.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998988778999999999
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.86 E-value=0.0085 Score=31.31 Aligned_cols=22 Identities=45% Similarity=0.868 Sum_probs=14.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699992899999995698
Q 000913 181 TLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
+++.||+|+||||+.++++..+
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899877558999999985
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.85 E-value=0.0084 Score=31.32 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699992899999995698
Q 000913 181 TLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
++|+|.|.+|||||+++|+|--
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 7688999998999999997889
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.85 E-value=0.0096 Score=30.97 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 809999826999677899525089
Q 000913 894 GVLTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 894 G~~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
..++.|+||.||||||+-+.|+..
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 948999899999889999999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.85 E-value=0.012 Score=30.44 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=22.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 980999982699967789952508977
Q 000913 893 PGVLTALMGVSGAGKTTLMDVLAGRKT 919 (1226)
Q Consensus 893 ~G~~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1226)
..-+++|-|+.||||||+++.|+....
T Consensus 8 kp~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 8 QPFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 861999889999888999999998707
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.83 E-value=0.0049 Score=32.81 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999928999999956989
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
+.++.||||+||||++++++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899678999899999999999987
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.81 E-value=0.0097 Score=30.94 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=18.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 84999986999928999999956989
Q 000913 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
|..+++-|+.||||||+.+.|+..+.
T Consensus 2 gkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 2 SKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 87899989988879999999999999
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.77 E-value=0.0044 Score=33.07 Aligned_cols=40 Identities=18% Similarity=0.227 Sum_probs=29.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 99998699992899999995698999972229999682489977662299965799989
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHI 238 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~ 238 (1226)
+++|.|++||||||+.++|...+... | -.++.++|++-|-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~----~---------------v~~~iI~~Dsfyr 45 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE----G---------------VKAVSIEGDAFHR 45 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH----T---------------CCEEEEEGGGGBS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC----C---------------CCEEEEECCCCCC
T ss_conf 99998999780999999999997156----9---------------9769994777875
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.76 E-value=0.0063 Score=32.12 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=25.9
Q ss_pred EEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 82235233369809999826999677899525089
Q 000913 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 883 iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
+|+.+.-.-...-.+||.|+.|||||||++.|...
T Consensus 43 ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~ 77 (327)
T d2p67a1 43 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 77 (327)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99986531698328974389999899999999999
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.70 E-value=0.011 Score=30.70 Aligned_cols=27 Identities=41% Similarity=0.462 Sum_probs=23.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 698099998269996778995250897
Q 000913 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 892 ~~G~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
+.|.+++|-|+.||||||+.+.|....
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 980599998998889999999999999
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.68 E-value=0.0086 Score=31.27 Aligned_cols=20 Identities=60% Similarity=0.738 Sum_probs=10.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999928999999956
Q 000913 181 TLLLGPPSSGKTTLLLALAG 200 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG 200 (1226)
++++|++|+|||||++.+.+
T Consensus 19 I~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999899999999964
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.66 E-value=0.0021 Score=35.16 Aligned_cols=21 Identities=38% Similarity=0.665 Sum_probs=12.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999289999999569
Q 000913 181 TLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
++++|++++|||||+++|.|.
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999999589
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.65 E-value=0.0092 Score=31.07 Aligned_cols=21 Identities=38% Similarity=0.442 Sum_probs=13.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999289999999569
Q 000913 181 TLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
++++|++|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999719
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.63 E-value=0.012 Score=30.42 Aligned_cols=21 Identities=24% Similarity=0.672 Sum_probs=10.6
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999826999677899525089
Q 000913 897 TALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 897 ~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
++++|.-.||||||++.|.|.
T Consensus 27 ivVvG~~ssGKSSliNaLlG~ 47 (306)
T d1jwyb_ 27 IVVVGSQSSGKSSVLENIVGR 47 (306)
T ss_dssp EEEEECSSSSHHHHHHHHHTS
T ss_pred EEEEECCCCCHHHHHHHHHCC
T ss_conf 999818989799999999689
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.61 E-value=0.011 Score=30.47 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=23.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 80999982699967789952508977
Q 000913 894 GVLTALMGVSGAGKTTLMDVLAGRKT 919 (1226)
Q Consensus 894 G~~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1226)
+.+++|-|+.||||||+++.|+....
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98899987888779999999999973
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.61 E-value=0.008 Score=31.48 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99998269996778995250897
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
.++|+|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.59 E-value=0.021 Score=28.87 Aligned_cols=34 Identities=26% Similarity=0.202 Sum_probs=22.8
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 76301699957849999869999289999999569
Q 000913 167 ILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 167 iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
-+|. +...-.|.-+++.|+||+|||||...|..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 4889-999999999999808999999999999984
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.56 E-value=0.017 Score=29.36 Aligned_cols=44 Identities=20% Similarity=0.175 Sum_probs=28.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEC
Q ss_conf 99998699992899999995698999972229999682489977662299965
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYIS 232 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~ 232 (1226)
-++|+|-|.+|||||+++|++--. ....++.++..|.-.+..|+
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~~---------~~~~ypf~ti~pn~gvv~v~ 47 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAGI---------EAANYPFCTIEPNTGVVPMP 47 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC---------------CCCCCCCCSSEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC---------CCCCCCCCCCCCCEEEEECC
T ss_conf 488889999988999999977997---------41369988877845899643
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.54 E-value=0.0092 Score=31.09 Aligned_cols=70 Identities=14% Similarity=0.124 Sum_probs=36.3
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHH-HCCEEEEEECCCEEEEECCCCCCHHHHHHH
Q ss_conf 9987899299999999999999999999873999799992597589997-428698992694999967998650158989
Q 000913 1025 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE-AFDELFLMKRGGQEIYVGPLGRHSCHLISY 1103 (1226)
Q Consensus 1025 ~P~iL~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~-~fD~ll~l~~gg~~vy~g~~~~~~~~~~~~ 1103 (1226)
+.+++++||.-. |...+...+.+.+... .....+|++++++.. +.. .-+| -..+++-++.. .++..+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~-~~~~~~Il~tn~~~~-i~~~l~sR-------~~~i~~~~~~~--~~~~~~ 198 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKY-SKNIRLIMVCDSMSP-IIAPIKSQ-------CLLIRCPAPSD--SEISTI 198 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHS-TTTEEEEEEESCSCS-SCHHHHTT-------SEEEECCCCCH--HHHHHH
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCC-CCCCCCEEEECCCCC-HHHHHHCC-------HHEEEECCCCH--HHHHHH
T ss_conf 724999424333-4543111221002213-566430001021110-02544210-------00243035330--468999
Q ss_pred HHH
Q ss_conf 871
Q 000913 1104 FEA 1106 (1226)
Q Consensus 1104 f~~ 1106 (1226)
.+.
T Consensus 199 l~~ 201 (252)
T d1sxje2 199 LSD 201 (252)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.53 E-value=0.016 Score=29.55 Aligned_cols=26 Identities=38% Similarity=0.327 Sum_probs=22.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 84999986999928999999956989
Q 000913 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
..+.+++||+|+||||.+-=||.++.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 86899989999988999999999999
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.51 E-value=0.016 Score=29.61 Aligned_cols=25 Identities=40% Similarity=0.559 Sum_probs=15.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9809999826999677899525089
Q 000913 893 PGVLTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 893 ~G~~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
+..+++++||+|+||||.+-=||.+
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9989999899999889999999999
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.50 E-value=0.0087 Score=31.24 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99998269996778995250897
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
.+.|+|++|+|||||++.|.+..
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996598
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.48 E-value=0.0097 Score=30.93 Aligned_cols=23 Identities=39% Similarity=0.410 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99998269996778995250897
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
.+.|+||+|+||||+-+.|+-+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.48 E-value=0.014 Score=29.97 Aligned_cols=43 Identities=23% Similarity=0.381 Sum_probs=28.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 99998699992899999995698999972229999682489977662299965799989
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHDNHI 238 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~d~~~ 238 (1226)
+++|-|++|||||||...|.-.+... .| ....++.++.+|.+.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~---~~-------------~~~~v~~iS~DdfY~ 71 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEK---YG-------------GEKSIGYASIDDFYL 71 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH---HG-------------GGSCEEEEEGGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH---HC-------------CCCCEEEECCCCCCC
T ss_conf 99837998788999999999999987---27-------------786067635677778
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.47 E-value=0.011 Score=30.60 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099998269996778995250897
Q 000913 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
-.+||.||+||||||.-+.|+...
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 599978999879899999999996
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.46 E-value=0.015 Score=29.77 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=21.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 98099998269996778995250897
Q 000913 893 PGVLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 893 ~G~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
+-.++.|+||.||||||+.+.|+...
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97289998999999899999999985
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.45 E-value=0.015 Score=29.71 Aligned_cols=27 Identities=41% Similarity=0.463 Sum_probs=17.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 784999986999928999999956989
Q 000913 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
.|.++++-|+-||||||+.+.|+-++.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.44 E-value=0.011 Score=30.57 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999289999999569
Q 000913 181 TLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
++++|++|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999739
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.40 E-value=0.013 Score=30.15 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99998269996778995250897
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
.++++|+.|+|||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.39 E-value=0.014 Score=29.92 Aligned_cols=26 Identities=42% Similarity=0.515 Sum_probs=22.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 69809999826999677899525089
Q 000913 892 RPGVLTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 892 ~~G~~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
++|-.+.|+||.||||||.-+.|+..
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99638999899999889999999998
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.38 E-value=0.012 Score=30.37 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999289999999569
Q 000913 181 TLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
++++|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999996989999999709
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.37 E-value=0.0097 Score=30.95 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99998269996778995250897
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
.++|+|.+|+|||||++.+.+..
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996798
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.32 E-value=0.015 Score=29.78 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=13.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999289999999569
Q 000913 181 TLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
++++|++|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999619
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.32 E-value=0.011 Score=30.47 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99998269996778995250897
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
-+||+|...||||||++.|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=94.31 E-value=0.018 Score=29.32 Aligned_cols=22 Identities=41% Similarity=0.459 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699992899999995698
Q 000913 181 TLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
++++|...+|||||+++|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999345884999999997034
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.28 E-value=0.011 Score=30.48 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9998269996778995250897
Q 000913 897 TALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 897 ~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
+.|+|++||||||+-+.||...
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.26 E-value=0.015 Score=29.73 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=22.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 784999986999928999999956989
Q 000913 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
.+..++++||+|+||||.+-=||.++.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 977999989999988999999999999
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.25 E-value=0.02 Score=28.99 Aligned_cols=23 Identities=43% Similarity=0.680 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999928999999956989
Q 000913 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
++++|.+|+|||||++.+.+...
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989899399999999818856
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.22 E-value=0.016 Score=29.51 Aligned_cols=33 Identities=30% Similarity=0.512 Sum_probs=27.3
Q ss_pred EEC-CCCCCCCCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 223-523336980999982699967789952508
Q 000913 884 LNG-VSGAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1226)
Q Consensus 884 L~~-vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g 916 (1226)
|+. +.|-+++|+++-|.|++|+||||+..-++-
T Consensus 23 LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 23 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 9972079862885999991799998999999999
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.18 E-value=0.01 Score=30.83 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99998269996778995250897
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
-++|+|+.|+|||||++.|.+..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.17 E-value=0.014 Score=29.98 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=12.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999928999999956
Q 000913 181 TLLLGPPSSGKTTLLLALAG 200 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG 200 (1226)
++++|++|+|||||++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999098999999982
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.16 E-value=0.015 Score=29.72 Aligned_cols=27 Identities=30% Similarity=0.317 Sum_probs=21.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 784999986999928999999956989
Q 000913 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
+...++++||+|+||||.+-=||-++.
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~~ 36 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMFV 36 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998999989999988999999999999
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.13 E-value=0.013 Score=30.22 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999826999677899525089
Q 000913 896 LTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
.+.|+||.||||||+.+.|+-.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999889999989999999998
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.13 E-value=0.021 Score=28.78 Aligned_cols=25 Identities=24% Similarity=0.322 Sum_probs=20.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 6980999982699967789952508
Q 000913 892 RPGVLTALMGVSGAGKTTLMDVLAG 916 (1226)
Q Consensus 892 ~~G~~~ai~G~sGaGKTTLl~~L~g 916 (1226)
..-+++-++|+.||||||+.+-++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9998999989999989999999997
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.10 E-value=0.016 Score=29.51 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=13.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999289999999569
Q 000913 180 LTLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
.++|+|.-+||||||+++|.|.
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~ 49 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999768989799999999689
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.09 E-value=0.018 Score=29.19 Aligned_cols=20 Identities=35% Similarity=0.350 Sum_probs=12.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998699992899999995
Q 000913 180 LTLLLGPPSSGKTTLLLALA 199 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~La 199 (1226)
+++|.|++||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.08 E-value=0.0075 Score=31.64 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999826999677899525089
Q 000913 896 LTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
++||.|+|||||||+.+.|...
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i 27 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQI 27 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978099999999999
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.07 E-value=0.015 Score=29.80 Aligned_cols=20 Identities=15% Similarity=0.411 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999928999999956
Q 000913 181 TLLLGPPSSGKTTLLLALAG 200 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG 200 (1226)
++++|++|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899598999999982
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.03 E-value=0.016 Score=29.57 Aligned_cols=29 Identities=34% Similarity=0.507 Sum_probs=25.4
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 23336980999982699967789952508
Q 000913 888 SGAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1226)
Q Consensus 888 s~~i~~G~~~ai~G~sGaGKTTLl~~L~g 916 (1226)
.|-+++|.++-|.|++|+|||||..-++-
T Consensus 28 ~GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 28 GGGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp TSSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 79986996999983899988999999999
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.03 E-value=0.017 Score=29.35 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=23.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 980999982699967789952508977
Q 000913 893 PGVLTALMGVSGAGKTTLMDVLAGRKT 919 (1226)
Q Consensus 893 ~G~~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1226)
.|.++++-|+.||||||+.+.|+.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.99 E-value=0.018 Score=29.23 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=30.2
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHCCC-CCCCEEEEEEEECCCC
Q ss_conf 33369809999826999677899525089-7786379899995934
Q 000913 889 GAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYITGNITISGYP 933 (1226)
Q Consensus 889 ~~i~~G~~~ai~G~sGaGKTTLl~~L~g~-~~~~~~~G~i~i~g~~ 933 (1226)
+-+..|.++-+.|++|+|||||.-.++.- ...|. -.++||...
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~--~~vyIDtE~ 98 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG--VAAFIDAEH 98 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC--EEEEEECCC
T ss_conf 98666336999648874889999999998754898--899998976
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.98 E-value=0.019 Score=29.13 Aligned_cols=24 Identities=38% Similarity=0.408 Sum_probs=17.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 809999826999677899525089
Q 000913 894 GVLTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 894 G~~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
..+++++||+|+||||.+-=||.+
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~ 35 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYF 35 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 989999899999989999999999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.97 E-value=0.016 Score=29.55 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHCC
Q ss_conf 0999982699967789952508
Q 000913 895 VLTALMGVSGAGKTTLMDVLAG 916 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~g 916 (1226)
-++||.|+.||||||+.+.|.-
T Consensus 4 ~IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999989887789999999998
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.97 E-value=0.014 Score=29.88 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999289999999569
Q 000913 181 TLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
++++|++|+|||||++.+.+.
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999997998999999999809
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.96 E-value=0.016 Score=29.58 Aligned_cols=21 Identities=33% Similarity=0.642 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999289999999569
Q 000913 181 TLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
++++|++|+|||||++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999993999999999629
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.95 E-value=0.02 Score=28.96 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=14.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999928999999956
Q 000913 181 TLLLGPPSSGKTTLLLALAG 200 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG 200 (1226)
++++|++|+|||||++.+..
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999799999999984
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.94 E-value=0.024 Score=28.50 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=12.3
Q ss_pred EEEEEECCCCCCHHHHHHHHCC
Q ss_conf 0999982699967789952508
Q 000913 895 VLTALMGVSGAGKTTLMDVLAG 916 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~g 916 (1226)
.+++++||+|+||||.+-=||.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~ 31 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLAR 31 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999998999999999
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=93.92 E-value=0.024 Score=28.52 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=23.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 6980999982699967789952508977
Q 000913 892 RPGVLTALMGVSGAGKTTLMDVLAGRKT 919 (1226)
Q Consensus 892 ~~G~~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1226)
++.-.+.++|..|+|||||++.|.+...
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~ 40 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMNEV 40 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSC
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 9857999999999898999999966888
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.90 E-value=0.022 Score=28.76 Aligned_cols=21 Identities=38% Similarity=0.439 Sum_probs=16.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999956
Q 000913 180 LTLLLGPPSSGKTTLLLALAG 200 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG 200 (1226)
+++|.|++||||||..+.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=93.88 E-value=0.015 Score=29.69 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99998269996778995250897
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
.+.|+|++||||||+-+.||-+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88998899998899999999994
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.87 E-value=0.021 Score=28.79 Aligned_cols=43 Identities=26% Similarity=0.368 Sum_probs=29.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCC
Q ss_conf 57849999869999289999999569899997222999968248
Q 000913 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDM 219 (1226)
Q Consensus 176 ~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~V~~nG~~~ 219 (1226)
+.|.++.+.|.||||||||.+.|+-++... .-.-.+.++|..+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~-~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRD-RRVHAYRLDGDNI 64 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHH-HCCCEEEECHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCHHH
T ss_conf 998699998999999899999999887774-2750899753678
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.87 E-value=0.017 Score=29.36 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099998269996778995250897
Q 000913 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
.++.++|.+|+||||+.+.|+...
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899998999999999999999999
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.86 E-value=0.019 Score=29.12 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=11.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999289999999569
Q 000913 180 LTLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
++.|+||.++|||||||.|.|.
T Consensus 34 vvsi~G~~~sGKS~llN~l~~~ 55 (277)
T d1f5na2 34 VVAIVGLYRTGKSYLMNKLAGK 55 (277)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9998899999799999998099
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.82 E-value=0.018 Score=29.19 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99998269996778995250897
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
++.|.|++||||||+.+.|+.+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998989989899999999999
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=93.81 E-value=0.026 Score=28.27 Aligned_cols=31 Identities=48% Similarity=0.724 Sum_probs=27.2
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 9995784999986999928999999956989
Q 000913 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 173 ~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
|=++.|++|.+-||+|||||||...++....
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9866754789805876522799999999997
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.79 E-value=0.017 Score=29.35 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=24.6
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECC
Q ss_conf 0999982699967789952508977863798999959
Q 000913 895 VLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISG 931 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g 931 (1226)
..+-|.||.|+|||||.+.|++..... -+.+|+
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~~----~~~i~~ 65 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQGN----VIVIDN 65 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTTC----CEEECT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCC----EEEEEC
T ss_conf 799988979988999999999986515----489832
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.74 E-value=0.028 Score=28.06 Aligned_cols=28 Identities=32% Similarity=0.309 Sum_probs=25.1
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9995784999986999928999999956
Q 000913 173 GVIKPGRLTLLLGPPSSGKTTLLLALAG 200 (1226)
Q Consensus 173 ~~i~pG~~~~ilGp~GsGKSTLL~~LaG 200 (1226)
|=+++|+++.|.||||||||+|...++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9976897999988998878899999999
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=93.74 E-value=0.014 Score=29.91 Aligned_cols=47 Identities=21% Similarity=0.364 Sum_probs=30.9
Q ss_pred EECCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCC-CCCEEEEEEEEC
Q ss_conf 22352333698099998269996778995250897-786379899995
Q 000913 884 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-TGGYITGNITIS 930 (1226)
Q Consensus 884 L~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~-~~~~~~G~i~i~ 930 (1226)
++.+...-...-.++|.|+-|||||||++.|.... ..|..-|-+.+|
T Consensus 41 ~~~~~~~~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavD 88 (323)
T d2qm8a1 41 IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 88 (323)
T ss_dssp HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 998633069815986117998889999999999876368751344346
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.72 E-value=0.019 Score=29.07 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=14.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999928999999956
Q 000913 181 TLLLGPPSSGKTTLLLALAG 200 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG 200 (1226)
++++|.+|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999198999999971
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.71 E-value=0.023 Score=28.60 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=16.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999289999999569
Q 000913 181 TLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
++++|.+|+|||||++.+.+.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997989999999709
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.71 E-value=0.026 Score=28.23 Aligned_cols=34 Identities=38% Similarity=0.698 Sum_probs=26.8
Q ss_pred EEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 8223523336980999982699967789952508977
Q 000913 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 919 (1226)
Q Consensus 883 iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1226)
+|+.++. |=.+++++||-++|||||||.|+|...
T Consensus 24 ~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 24 ILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp HHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred HHHCCCC---CEEEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 9970799---879999889999979999999809987
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.69 E-value=0.03 Score=27.89 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999928999999956989
Q 000913 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
++++|.+|+|||||++.+.+...
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99999899299999999972867
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.68 E-value=0.017 Score=29.35 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999289999999569
Q 000913 181 TLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
++++|++|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.66 E-value=0.028 Score=28.02 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=12.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 698099998269996778995250
Q 000913 892 RPGVLTALMGVSGAGKTTLMDVLA 915 (1226)
Q Consensus 892 ~~G~~~ai~G~sGaGKTTLl~~L~ 915 (1226)
+||.++.|-|+=||||||+.+.++
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~ 54 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGML 54 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 998299996687765889999987
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.65 E-value=0.018 Score=29.29 Aligned_cols=21 Identities=38% Similarity=0.650 Sum_probs=14.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999289999999569
Q 000913 181 TLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
++|+|++|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999619
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.63 E-value=0.059 Score=26.00 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99998269996778995250897
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
.++++|+.|+|||||++.+.+..
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999919899999996199
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.62 E-value=0.03 Score=27.83 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=21.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 84999986999928999999956989
Q 000913 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 178 G~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
-.+++++||+|+||||.+-=||-++.
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 97999989999998999999999999
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.59 E-value=0.019 Score=29.13 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=15.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999956
Q 000913 180 LTLLLGPPSSGKTTLLLALAG 200 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG 200 (1226)
-++|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.58 E-value=0.021 Score=28.83 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999289999999569
Q 000913 181 TLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
++++|.+|+|||||++.+.+.
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998993999999999719
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.57 E-value=0.019 Score=29.17 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999289999999569
Q 000913 181 TLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
++++|.+|+|||||++.+.+.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999996789999999868
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.57 E-value=0.021 Score=28.88 Aligned_cols=21 Identities=33% Similarity=0.672 Sum_probs=15.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999289999999569
Q 000913 181 TLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
++++|.+|+|||||++.+.+.
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990889999999719
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.55 E-value=0.019 Score=29.09 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9998269996778995250897
Q 000913 897 TALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 897 ~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
+.|+|++||||||+-+.|+.+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.53 E-value=0.02 Score=29.01 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=23.0
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 369809999826999677899525089
Q 000913 891 FRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 891 i~~G~~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
++.+.++.|+||.||||||+-+.|+..
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 467828999899999879999999998
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.52 E-value=0.022 Score=28.76 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999826999677899525089
Q 000913 896 LTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
.+.|+||.||||||..+.|+..
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999799999989999999998
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.52 E-value=0.024 Score=28.45 Aligned_cols=26 Identities=31% Similarity=0.412 Sum_probs=22.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 98099998269996778995250897
Q 000913 893 PGVLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 893 ~G~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
.|..++|-|+.||||||+.+.|+...
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98789998998887999999999999
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.49 E-value=0.027 Score=28.11 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=15.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999928999999956989
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
+++|-|+.||||||+++.|+.++.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.45 E-value=0.014 Score=30.03 Aligned_cols=19 Identities=47% Similarity=0.704 Sum_probs=9.6
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998699992899999995
Q 000913 181 TLLLGPPSSGKTTLLLALA 199 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~La 199 (1226)
++++|++|+|||||++.+.
T Consensus 20 I~lvG~~~vGKTsLi~~l~ 38 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQ 38 (182)
T ss_dssp EEEEEETTSSHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999999998899998873
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.40 E-value=0.021 Score=28.88 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=14.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999956
Q 000913 180 LTLLLGPPSSGKTTLLLALAG 200 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG 200 (1226)
-++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899298999999971
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.38 E-value=0.027 Score=28.11 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=26.5
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 6999578499998699992899999995698
Q 000913 172 SGVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 172 s~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
.|=+++|++++|.|+||+|||+|+.-++-..
T Consensus 20 ~GGi~~gsl~li~G~pGsGKT~l~~qia~~~ 50 (242)
T d1tf7a2 20 GGGFFKDSIILATGATGTGKTLLVSRFVENA 50 (242)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 6898698499999189999999999999999
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.35 E-value=0.022 Score=28.69 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=21.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 698099998269996778995250897
Q 000913 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 892 ~~G~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
+|+ -+-++||+|+|||.|.++||...
T Consensus 48 ~~~-~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 48 TPK-NILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCC-CEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCC-EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 986-69998999988889999986213
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.33 E-value=0.024 Score=28.49 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999289999999569
Q 000913 181 TLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
++|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994989999999729
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.29 E-value=0.027 Score=28.10 Aligned_cols=26 Identities=15% Similarity=0.379 Sum_probs=21.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 98099998269996778995250897
Q 000913 893 PGVLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 893 ~G~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
.+..+.|.||.|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.29 E-value=0.025 Score=28.33 Aligned_cols=27 Identities=26% Similarity=0.193 Sum_probs=21.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 784999986999928999999956989
Q 000913 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
...+++++||+|+||||.+-=||-++.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998999989999998999999999999
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.26 E-value=0.022 Score=28.66 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=15.7
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999928999999956
Q 000913 181 TLLLGPPSSGKTTLLLALAG 200 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG 200 (1226)
++++|.+|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999099999999970
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.24 E-value=0.027 Score=28.16 Aligned_cols=28 Identities=36% Similarity=0.582 Sum_probs=24.2
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 2333698099998269996778995250
Q 000913 888 SGAFRPGVLTALMGVSGAGKTTLMDVLA 915 (1226)
Q Consensus 888 s~~i~~G~~~ai~G~sGaGKTTLl~~L~ 915 (1226)
.|-+.+|.++-|.|++|+|||||.--++
T Consensus 30 ~GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 30 GGGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 6995588799998589898899999999
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.24 E-value=0.031 Score=27.73 Aligned_cols=29 Identities=24% Similarity=0.285 Sum_probs=25.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 57849999869999289999999569899
Q 000913 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1226)
Q Consensus 176 ~pG~~~~ilGp~GsGKSTLL~~LaG~~~~ 204 (1226)
+||.++++-|+=|||||||.+.++.-+..
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 99829999668776588999998764223
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.23 E-value=0.0052 Score=32.65 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99998269996778995250897
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
.++|+|.+++|||||++.|.|..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.20 E-value=0.023 Score=28.60 Aligned_cols=24 Identities=46% Similarity=0.642 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099998269996778995250897
Q 000913 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
-.++++|+.|+|||||++.+.+..
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799999999989999999996487
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=93.19 E-value=0.043 Score=26.87 Aligned_cols=35 Identities=31% Similarity=0.304 Sum_probs=26.3
Q ss_pred EEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 822352333698099998269996778995250897
Q 000913 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 883 iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
.+|.....+ .|.-+.|.|+||+|||||...|..+-
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~G 39 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINKN 39 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 178999999-99999998189999899999999859
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.19 E-value=0.029 Score=27.99 Aligned_cols=48 Identities=6% Similarity=0.039 Sum_probs=24.3
Q ss_pred CCCCCCEEECCCCCC-CHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHH
Q ss_conf 498534322598799-9998999999999998804974899995493469
Q 000913 340 GPALALFMDEISTGL-DSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (1226)
Q Consensus 340 ~~~~illlDEptsgL-Ds~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~ 388 (1226)
...+++++|+.-.=. +..+...+...+..... .++.+|++-..++.+.
T Consensus 96 ~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~-~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 96 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHPQKL 144 (213)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCGGGC
T ss_pred HHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCCCHHC
T ss_conf 621301011265505865778899999998763-1663899548751001
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.16 E-value=0.022 Score=28.75 Aligned_cols=26 Identities=35% Similarity=0.626 Sum_probs=21.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 369809999826999677899525089
Q 000913 891 FRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 891 i~~G~~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
+++. .+||+|...||||||++.|.+.
T Consensus 3 ~r~p-~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 3 IRSP-IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp ECCC-EEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCC-EEEEEECCCCCHHHHHHHHHHH
T ss_conf 8998-7999969985499999999823
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=93.16 E-value=0.017 Score=29.38 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=9.6
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99998269996778995250
Q 000913 896 LTALMGVSGAGKTTLMDVLA 915 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~ 915 (1226)
.+.++|++|+|||||++.+.
T Consensus 14 kIvlvG~~~vGKTSli~rl~ 33 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLK 33 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999987899999984
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.08 E-value=0.029 Score=27.97 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=19.3
Q ss_pred EEEEEECCCCCCHHHHHHHHCC
Q ss_conf 0999982699967789952508
Q 000913 895 VLTALMGVSGAGKTTLMDVLAG 916 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~g 916 (1226)
-++||-|+.|||||||-..|.-
T Consensus 28 ~iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 28 LFIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8998379987889999999999
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.07 E-value=0.017 Score=29.43 Aligned_cols=20 Identities=35% Similarity=0.609 Sum_probs=13.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999928999999956
Q 000913 181 TLLLGPPSSGKTTLLLALAG 200 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG 200 (1226)
++++|.+|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999499999999970
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.05 E-value=0.024 Score=28.42 Aligned_cols=22 Identities=45% Similarity=0.546 Sum_probs=13.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999289999999569
Q 000913 180 LTLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
++.|.|.-||||||||+-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEECCCCCHHHHHHHHHHC
T ss_conf 8998648889999999999856
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.05 E-value=0.023 Score=28.58 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999826999677899525089
Q 000913 896 LTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
.++++|.+|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.05 E-value=0.029 Score=27.99 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=15.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999928999999956
Q 000913 181 TLLLGPPSSGKTTLLLALAG 200 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG 200 (1226)
++++|.+|+|||||++.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999298999999973
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=93.02 E-value=0.023 Score=28.54 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99998269996778995250897
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
.+.++|++|+|||||++.+.+..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~~ 26 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASGQ 26 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989899999997197
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=92.88 E-value=0.038 Score=27.21 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=22.8
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 23336980999982699967789952508
Q 000913 888 SGAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1226)
Q Consensus 888 s~~i~~G~~~ai~G~sGaGKTTLl~~L~g 916 (1226)
=..+-.|+..+|.|++|+|||||+..|+.
T Consensus 37 l~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 37 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp HSCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 25645787556867999887899999999
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.86 E-value=0.028 Score=28.06 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999289999999569
Q 000913 180 LTLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
-++|+|.+|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993889999999719
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.85 E-value=0.028 Score=28.05 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=14.5
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999928999999956
Q 000913 181 TLLLGPPSSGKTTLLLALAG 200 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG 200 (1226)
++++|.+|+|||||++.+.+
T Consensus 3 v~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899098999999984
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.85 E-value=0.031 Score=27.77 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=15.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999289999999569
Q 000913 180 LTLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
-++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999749
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.83 E-value=0.032 Score=27.70 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999826999677899525089
Q 000913 896 LTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
.+.|+||.||||||+.+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999989999999998
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.80 E-value=0.032 Score=27.64 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=14.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999928999999956
Q 000913 181 TLLLGPPSSGKTTLLLALAG 200 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG 200 (1226)
++|+|.+|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999398999999982
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.77 E-value=0.037 Score=27.25 Aligned_cols=24 Identities=33% Similarity=0.392 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099998269996778995250897
Q 000913 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
..+-|.||+|+||||+.++|+...
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 449998799998889999999998
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=92.73 E-value=0.037 Score=27.27 Aligned_cols=19 Identities=42% Similarity=0.429 Sum_probs=10.7
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998699992899999995
Q 000913 181 TLLLGPPSSGKTTLLLALA 199 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~La 199 (1226)
++++|++++|||||++.|.
T Consensus 6 i~iiGhvd~GKSTL~~~Ll 24 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALT 24 (204)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999478984999999999
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.73 E-value=0.034 Score=27.55 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999289999999569
Q 000913 181 TLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
++++|++|+|||||++-+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997899999999739
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=92.72 E-value=0.059 Score=26.00 Aligned_cols=21 Identities=52% Similarity=0.577 Sum_probs=15.7
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 499998699992899999995
Q 000913 179 RLTLLLGPPSSGKTTLLLALA 199 (1226)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~La 199 (1226)
+-++|+|+.|+|||||..+|.
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 099999488980999999999
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.72 E-value=0.035 Score=27.46 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=19.4
Q ss_pred EEEEEECCCCCCHHHHHHHHCC
Q ss_conf 0999982699967789952508
Q 000913 895 VLTALMGVSGAGKTTLMDVLAG 916 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~g 916 (1226)
-++||.|+.||||||+.+.+..
T Consensus 3 ~iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999888887889999999998
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.69 E-value=0.028 Score=28.08 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99998269996778995250897
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
.++++|++|+|||||++.+.+..
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999969899999997098
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=92.67 E-value=0.034 Score=27.48 Aligned_cols=23 Identities=39% Similarity=0.496 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99998269996778995250897
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
+++|.||.||||+|+-+.|+.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89977999889899999999996
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.67 E-value=0.025 Score=28.37 Aligned_cols=72 Identities=22% Similarity=0.261 Sum_probs=36.9
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 99878992999999999999999999998739997999925975899974286989926949999679986501589898
Q 000913 1025 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYF 1104 (1226)
Q Consensus 1025 ~P~iL~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~ll~l~~gg~~vy~g~~~~~~~~~~~~f 1104 (1226)
++.++++||-- .+.......+...+..- .....+|+++++++. +...+ ..+ ...+.+.+.. ......+.
T Consensus 109 ~~~iilide~d-~~~~~~~~~ll~~l~~~-~~~~~~i~~~n~~~~-i~~~l-----~sR-~~~i~~~~~~--~~~~~~~l 177 (231)
T d1iqpa2 109 SFKIIFLDEAD-ALTQDAQQALRRTMEMF-SSNVRFILSCNYSSK-IIEPI-----QSR-CAIFRFRPLR--DEDIAKRL 177 (231)
T ss_dssp SCEEEEEETGG-GSCHHHHHHHHHHHHHT-TTTEEEEEEESCGGG-SCHHH-----HHT-EEEEECCCCC--HHHHHHHH
T ss_pred CCEEEEEHHHH-HCCHHHHHHHHHHCCCC-CCCEEEEECCCCHHH-CHHHH-----HCC-CCCCCCCCCC--HHHHHHHH
T ss_conf 72288614344-31214789876411247-764478861487665-65768-----473-1210123343--04677899
Q ss_pred HHC
Q ss_conf 719
Q 000913 1105 EAI 1107 (1226)
Q Consensus 1105 ~~~ 1107 (1226)
..+
T Consensus 178 ~~~ 180 (231)
T d1iqpa2 178 RYI 180 (231)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 888
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.61 E-value=0.043 Score=26.84 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=20.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9809999826999677899525089
Q 000913 893 PGVLTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 893 ~G~~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
+--.+.++|++|+|||||++-+.+.
T Consensus 16 k~~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 16 KELRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 6689999999999889999887338
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.59 E-value=0.028 Score=28.01 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999826999677899525089
Q 000913 896 LTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
.++++|.+|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.58 E-value=0.033 Score=27.63 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=14.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999956
Q 000913 180 LTLLLGPPSSGKTTLLLALAG 200 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG 200 (1226)
-++|+|.+|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.58 E-value=0.04 Score=27.08 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999995698
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
.++|+|..+||||||+++|.|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.54 E-value=0.039 Score=27.13 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99998269996778995250897
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
.++++|.-.||||||++.|+|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.51 E-value=0.038 Score=27.25 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999928999999956
Q 000913 181 TLLLGPPSSGKTTLLLALAG 200 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG 200 (1226)
++|+|.+|+|||||++-+..
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899499999999973
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=92.51 E-value=0.038 Score=27.18 Aligned_cols=22 Identities=41% Similarity=0.496 Sum_probs=17.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4999986999928999999956
Q 000913 179 RLTLLLGPPSSGKTTLLLALAG 200 (1226)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG 200 (1226)
+-++|+|++|||||++++.+.-
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~ 72 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAY 72 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHH
T ss_conf 6589990799968999999999
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.46 E-value=0.068 Score=25.61 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=13.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999289999999569
Q 000913 180 LTLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
-++++|.+|+|||||++.+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999719
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=92.44 E-value=0.047 Score=26.61 Aligned_cols=28 Identities=43% Similarity=0.527 Sum_probs=23.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5784999986999928999999956989
Q 000913 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 176 ~pG~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
+|....+++||+|+|||.|.+.|+..+.
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l~ 78 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATLF 78 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 8766999978886248999999999835
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=92.42 E-value=0.037 Score=27.28 Aligned_cols=35 Identities=29% Similarity=0.231 Sum_probs=25.3
Q ss_pred EEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 822352333698099998269996778995250897
Q 000913 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 883 iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
.+|.... .-.|.-+.|+|+||+|||||...|..+-
T Consensus 4 ~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~~g 38 (176)
T d1kkma_ 4 SMHGVLV-DIYGLGVLITGDSGVGKSETALELVQRG 38 (176)
T ss_dssp EEEEEEE-EETTEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEEEE-EECCEEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 2899999-9999999998089999899999999859
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=92.41 E-value=0.039 Score=27.13 Aligned_cols=23 Identities=39% Similarity=0.536 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99998269996778995250897
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
.+.|+||.||||||+.+.|+...
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.39 E-value=0.022 Score=28.64 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=13.1
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999982699967789952508
Q 000913 896 LTALMGVSGAGKTTLMDVLAG 916 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g 916 (1226)
.++++|.+|+|||||++.+.+
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999088999999984
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=92.38 E-value=0.028 Score=28.04 Aligned_cols=16 Identities=38% Similarity=0.553 Sum_probs=13.6
Q ss_pred EEEECCCCCCHHHHHH
Q ss_conf 9998699992899999
Q 000913 181 TLLLGPPSSGKTTLLL 196 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~ 196 (1226)
++|.|+|||||||.|-
T Consensus 17 ~lI~g~aGTGKTt~l~ 32 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVIT 32 (306)
T ss_dssp EEECCCTTSCHHHHHH
T ss_pred EEEEEECCCCHHHHHH
T ss_conf 8999628843899999
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=92.38 E-value=0.042 Score=26.91 Aligned_cols=28 Identities=39% Similarity=0.681 Sum_probs=24.2
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9578499998699992899999995698
Q 000913 175 IKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 175 i~pG~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
+-.|+-.+|.|++|+|||||+..++.-.
T Consensus 40 igrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 40 IGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp CBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4578755686799988789999999977
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.37 E-value=0.039 Score=27.14 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=14.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999928999999956
Q 000913 181 TLLLGPPSSGKTTLLLALAG 200 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG 200 (1226)
++++|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999299999999971
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.37 E-value=0.032 Score=27.66 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999826999677899525089
Q 000913 896 LTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
.++++|+.|+|||||++.+.+.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999829
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.35 E-value=0.043 Score=26.90 Aligned_cols=19 Identities=42% Similarity=0.616 Sum_probs=12.5
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9999869999289999999
Q 000913 180 LTLLLGPPSSGKTTLLLAL 198 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L 198 (1226)
-++++|.+|+|||||++-+
T Consensus 8 KilllG~~~vGKTsll~~~ 26 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQM 26 (221)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 7999989999889999989
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.33 E-value=0.041 Score=27.03 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999982699967789952508
Q 000913 896 LTALMGVSGAGKTTLMDVLAG 916 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g 916 (1226)
.++++|.+|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=92.31 E-value=0.04 Score=27.07 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=15.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999928999999956
Q 000913 180 LTLLLGPPSSGKTTLLLALAG 200 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG 200 (1226)
-++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.30 E-value=0.04 Score=27.06 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=16.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999289999999569
Q 000913 180 LTLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
-++++|.+|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.28 E-value=0.041 Score=27.04 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999826999677899525089
Q 000913 896 LTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
.+.|+||.||||||..+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999879999989999999998
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.26 E-value=0.042 Score=26.95 Aligned_cols=23 Identities=52% Similarity=0.762 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99998269996778995250897
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
+++|-|.-||||||+++.|..+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998998789999999999999
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.26 E-value=0.044 Score=26.81 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999826999677899525089
Q 000913 896 LTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
.++++|.+|+|||||++-+.+.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.23 E-value=0.078 Score=25.25 Aligned_cols=25 Identities=36% Similarity=0.618 Sum_probs=11.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 6980999982699967789952508
Q 000913 892 RPGVLTALMGVSGAGKTTLMDVLAG 916 (1226)
Q Consensus 892 ~~G~~~ai~G~sGaGKTTLl~~L~g 916 (1226)
+|.--+|++|.=.+|||||++.|.|
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~ 30 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITG 30 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHS
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 9970899997248869999999970
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=92.20 E-value=0.031 Score=27.79 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=18.0
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHH
Q ss_conf 24763016999578499998699992899999
Q 000913 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLL 196 (1226)
Q Consensus 165 ~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~ 196 (1226)
..++++. .| -++|.|++||||||.|-
T Consensus 17 ~~~v~~~-----~g-~~lV~g~aGSGKTt~l~ 42 (318)
T d1pjra1 17 QEAVRTT-----EG-PLLIMAGAGSGKTRVLT 42 (318)
T ss_dssp HHHHHCC-----SS-CEEEEECTTSCHHHHHH
T ss_pred HHHHHCC-----CC-CEEEEECCCCCHHHHHH
T ss_conf 9998299-----99-98999529866899999
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=92.19 E-value=0.049 Score=26.51 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999928999999956989
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
=.+|+||||.|||++...|+.+..
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 967988898867799999999998
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=92.19 E-value=0.051 Score=26.43 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=15.1
Q ss_pred CEEEEEECCCCCCHHHHHHH
Q ss_conf 80999982699967789952
Q 000913 894 GVLTALMGVSGAGKTTLMDV 913 (1226)
Q Consensus 894 G~~~ai~G~sGaGKTTLl~~ 913 (1226)
+.++-|-|+-|+||||++..
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHH
T ss_pred CCEEEEECCCCCCCEEHHHH
T ss_conf 88599976898875216999
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.16 E-value=0.043 Score=26.88 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=16.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999289999999569
Q 000913 180 LTLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
-++++|.+|+|||||++-+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.15 E-value=0.046 Score=26.68 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99998269996778995250897
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
.++++|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.12 E-value=0.035 Score=27.42 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.6
Q ss_pred EEEEEECCCCCCHHHHHHHHCC
Q ss_conf 0999982699967789952508
Q 000913 895 VLTALMGVSGAGKTTLMDVLAG 916 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~g 916 (1226)
-.++|+|.+|+|||||++.+.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 3899999899298999999971
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=92.09 E-value=0.057 Score=26.10 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=22.4
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 698099998269996778995250897
Q 000913 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 892 ~~G~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
+|...+.++||+|+|||.|.+.||...
T Consensus 50 ~p~~~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 50 KPVGSFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 876589997787500699999998633
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.08 E-value=0.043 Score=26.89 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 49999869999289999999569899
Q 000913 179 RLTLLLGPPSSGKTTLLLALAGKLDP 204 (1226)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~~~~ 204 (1226)
+.++|=|+-||||||+++.|+-.+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.07 E-value=0.037 Score=27.30 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999826999677899525089
Q 000913 896 LTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
.++++|.+|+|||||++.+.+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999719
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.04 E-value=0.046 Score=26.67 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=14.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999928999999956
Q 000913 181 TLLLGPPSSGKTTLLLALAG 200 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG 200 (1226)
++++|.+|+|||||++.+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899598999999970
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.00 E-value=0.047 Score=26.65 Aligned_cols=22 Identities=41% Similarity=0.459 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999826999677899525089
Q 000913 896 LTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
.+.|+||.||||||+-+.|+..
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999979999999999
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.00 E-value=0.046 Score=26.70 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999826999677899525089
Q 000913 896 LTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
.++++|.+|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.96 E-value=0.05 Score=26.44 Aligned_cols=18 Identities=50% Similarity=0.730 Sum_probs=11.7
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999869999289999999
Q 000913 181 TLLLGPPSSGKTTLLLAL 198 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L 198 (1226)
++++|.+|+|||||++-+
T Consensus 5 ivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999989999989999988
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=91.85 E-value=0.069 Score=25.59 Aligned_cols=21 Identities=38% Similarity=0.501 Sum_probs=16.5
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999982699967789952508
Q 000913 896 LTALMGVSGAGKTTLMDVLAG 916 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g 916 (1226)
++||.|+-||||||..+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999979999889999999998
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=91.84 E-value=0.059 Score=26.02 Aligned_cols=30 Identities=43% Similarity=0.628 Sum_probs=26.6
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 999578499998699992899999995698
Q 000913 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 173 ~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
|=+++|++|.+.||||||||||+..++...
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~ 78 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 78 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 996673589980577747899999999998
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.81 E-value=0.049 Score=26.53 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999289999999569
Q 000913 180 LTLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
-++++|++|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990889999999849
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.78 E-value=0.053 Score=26.32 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999289999999569
Q 000913 181 TLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
++|+|.+|+|||||++.+...
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999998999999999649
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.77 E-value=0.05 Score=26.45 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999826999677899525089
Q 000913 896 LTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
.++++|+.|+|||||++.+.+.
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999619
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=91.77 E-value=0.053 Score=26.31 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999982699967789952508
Q 000913 896 LTALMGVSGAGKTTLMDVLAG 916 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g 916 (1226)
++||.|..||||||..+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.73 E-value=0.051 Score=26.40 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999826999677899525089
Q 000913 896 LTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
.+.++|..|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.73 E-value=0.065 Score=25.74 Aligned_cols=19 Identities=21% Similarity=0.066 Sum_probs=11.2
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9999869999289999999
Q 000913 180 LTLLLGPPSSGKTTLLLAL 198 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~L 198 (1226)
-++|+|+.|||||||..+|
T Consensus 8 ni~i~gh~~~GKTtL~e~l 26 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERI 26 (276)
T ss_dssp EEEEEECTTSCHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHH
T ss_conf 9999958989989999999
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.64 E-value=0.044 Score=26.82 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999826999677899525089
Q 000913 896 LTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
.+.++|++|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.61 E-value=0.049 Score=26.54 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=14.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999289999999569
Q 000913 181 TLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
++++|++|+|||||++.+.+.
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999996999999999719
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.52 E-value=0.045 Score=26.76 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999982699967789952508
Q 000913 896 LTALMGVSGAGKTTLMDVLAG 916 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g 916 (1226)
.+.++|.+|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=91.50 E-value=0.082 Score=25.10 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=15.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 98099998269996778995250
Q 000913 893 PGVLTALMGVSGAGKTTLMDVLA 915 (1226)
Q Consensus 893 ~G~~~ai~G~sGaGKTTLl~~L~ 915 (1226)
...+++|.|..|.|||||...+.
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~ 65 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQAL 65 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 84089997799788899999999
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.50 E-value=0.06 Score=25.95 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99998269996778995250897
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
++.++|..|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989929999999997286
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=91.46 E-value=0.061 Score=25.93 Aligned_cols=24 Identities=50% Similarity=0.699 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999928999999956989
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
-.+++||+|+|||-|.+.||..++
T Consensus 70 niLfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 70 NILLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 324418998637899999986443
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=91.44 E-value=0.042 Score=26.92 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9998269996778995250897
Q 000913 897 TALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 897 ~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
+-+.||.|+||||+.++|+...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 8987999973889999998503
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=91.43 E-value=0.068 Score=25.63 Aligned_cols=23 Identities=39% Similarity=0.457 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999995698
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
-++++|++|+|||||++.+.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999987899999984488
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.29 E-value=0.05 Score=26.46 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99998269996778995250897
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
.+.++|..|+|||||++-+.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989939999999997199
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.26 E-value=0.062 Score=25.86 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999826999677899525089
Q 000913 896 LTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
.+.++|..|+|||||++-+...
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999992989999999739
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=91.18 E-value=0.064 Score=25.78 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099998269996778995250897
Q 000913 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
-.+.|+||.||||||+-+.|+-..
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 169998899998799999999997
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.17 E-value=0.053 Score=26.33 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 09999826999677899525089
Q 000913 895 VLTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
-.+.++|..|+|||||++.+.+-
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 28999998990889999999719
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.17 E-value=0.074 Score=25.40 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999826999677899525089
Q 000913 896 LTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
.+.++|++|+|||||++-+...
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=91.16 E-value=0.064 Score=25.77 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=21.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9809999826999677899525089
Q 000913 893 PGVLTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 893 ~G~~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
.+-.+||+|.-.+|||||+++|++-
T Consensus 9 ~~~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 9 NNLKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 8737999789999899999999778
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.14 E-value=0.064 Score=25.78 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=14.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999289999999569
Q 000913 181 TLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
++++|.+|+|||||++-+...
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999998998999999999709
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.11 E-value=0.054 Score=26.27 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999826999677899525089
Q 000913 896 LTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
.+.|+|.+|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.10 E-value=0.068 Score=25.61 Aligned_cols=56 Identities=21% Similarity=0.265 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 789889999999999960998789929999999999999999999987399979999259
Q 000913 1007 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1066 (1226)
Q Consensus 1007 ~LSgGqrkrl~Ia~~L~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hq 1066 (1226)
.++..+.+++....-+...|-++..-.- |......+-+..+.....+..++.++..
T Consensus 197 ~~~~~e~~~~~~~~~~~~kP~~~v~Nk~----d~~~~e~~~~~~~~~~~~~~~vi~~sa~ 252 (319)
T d1wxqa1 197 KWSQDDLLAFASEIRRVNKPMVIAANKA----DAASDEQIKRLVREEEKRGYIVIPTSAA 252 (319)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEECG----GGSCHHHHHHHHHHHHHTTCEEEEECHH
T ss_pred HCCHHHHHHHHHHHHHHCCCHHHHCCCC----CCHHHHHHHHHHHHHHHCCCEEEEECHH
T ss_conf 4588899986887444237434322544----3102479999999875069989993588
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=91.08 E-value=0.059 Score=26.03 Aligned_cols=20 Identities=50% Similarity=0.732 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99998269996778995250
Q 000913 896 LTALMGVSGAGKTTLMDVLA 915 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~ 915 (1226)
-+||+|..|+|||||...|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999488980999999999
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.98 E-value=0.071 Score=25.49 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999982699967789952508
Q 000913 896 LTALMGVSGAGKTTLMDVLAG 916 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g 916 (1226)
.++++|.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=90.93 E-value=0.064 Score=25.80 Aligned_cols=34 Identities=32% Similarity=0.229 Sum_probs=25.4
Q ss_pred EEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 82235233369809999826999677899525089
Q 000913 883 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 883 iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
-+|. +...-.|.-+.|.|+||+|||||...|..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 4889-999999999999808999999999999984
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.89 E-value=0.071 Score=25.49 Aligned_cols=22 Identities=41% Similarity=0.481 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999826999677899525089
Q 000913 896 LTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
.+.|+||-||||||+.+.|+-+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899999989999999999
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.89 E-value=0.07 Score=25.55 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 09999826999677899525089
Q 000913 895 VLTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
.++.++|.+|+|||||++.+.+.
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998993889999999719
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.88 E-value=0.072 Score=25.48 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099998269996778995250897
Q 000913 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
-.++++|.+|+|||||++-+.+..
T Consensus 6 iKivviG~~~vGKTsli~~~~~~~ 29 (183)
T d1mh1a_ 6 IKCVVVGDGAVGKTCLLISYTTNA 29 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 999999999979999999997498
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.82 E-value=0.066 Score=25.71 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999826999677899525089
Q 000913 897 TALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 897 ~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
+-|.||+|+||||+.++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999849999999999
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.81 E-value=0.074 Score=25.40 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999289999999569
Q 000913 180 LTLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
-++++|.+|+|||||++.+...
T Consensus 4 KivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999995989999999729
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.78 E-value=0.059 Score=26.02 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999826999677899525089
Q 000913 896 LTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
.++++|..|+|||||++-+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990989999999849
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.74 E-value=0.098 Score=24.62 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=14.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999995698
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
-.++.||+|+||||+.+.++..+
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l 48 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYL 48 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 79888999875999999999821
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.70 E-value=0.097 Score=24.65 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=13.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699992899999995698
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
..++-||+|+||||+.++++..+
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l 58 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGL 58 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 59888899875899999999984
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=90.69 E-value=0.11 Score=24.33 Aligned_cols=27 Identities=37% Similarity=0.438 Sum_probs=21.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 784999986999928999999956989
Q 000913 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
.+-.++|+|-|-+|||||+|.|.|+-.
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 752789986675443555425426615
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=90.67 E-value=0.082 Score=25.12 Aligned_cols=25 Identities=36% Similarity=0.391 Sum_probs=20.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9809999826999677899525089
Q 000913 893 PGVLTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 893 ~G~~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
|-.-+-|.||.|+|||++.+.||..
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 9807998896999889999998620
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.60 E-value=0.081 Score=25.14 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=18.5
Q ss_pred EEEEEECCCCCCHHHHHHHHC
Q ss_conf 099998269996778995250
Q 000913 895 VLTALMGVSGAGKTTLMDVLA 915 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~ 915 (1226)
-.+.|+|.+|+|||||++-+.
T Consensus 7 ~KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 779999899998899999895
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=90.56 E-value=0.069 Score=25.56 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99998269996778995250
Q 000913 896 LTALMGVSGAGKTTLMDVLA 915 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~ 915 (1226)
-+||+|..|||||||...|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 99999589899899999999
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.55 E-value=0.051 Score=26.38 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999826999677899525089
Q 000913 896 LTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
.+.++|..|+|||||++.+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994999999999709
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.53 E-value=0.058 Score=26.04 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=21.4
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 3698099998269996778995250897
Q 000913 891 FRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 891 i~~G~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
+.|- -+-++||+|+|||-|.+.||+..
T Consensus 47 i~ks-NILliGPTGvGKTlLAr~LAk~l 73 (443)
T d1g41a_ 47 VTPK-NILMIGPTGVGKTEIARRLAKLA 73 (443)
T ss_dssp CCCC-CEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCC-CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 5656-47998999988999999999873
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.48 E-value=0.066 Score=25.71 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999826999677899525089
Q 000913 896 LTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
.+.|+|.+|+|||||++.+.+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999993989999999829
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.46 E-value=0.08 Score=25.17 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999982699967789952508
Q 000913 896 LTALMGVSGAGKTTLMDVLAG 916 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g 916 (1226)
.+.++|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=90.32 E-value=0.1 Score=24.54 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=21.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8099998269996778995250897
Q 000913 894 GVLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 894 G~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
...+-|.||.|.||||+++.|+...
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8816888989998999999999997
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.25 E-value=0.086 Score=25.00 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999826999677899525089
Q 000913 896 LTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
.+.|+|.+|+|||||++.+...
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999998999999999649
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.25 E-value=0.091 Score=24.83 Aligned_cols=21 Identities=29% Similarity=0.533 Sum_probs=18.4
Q ss_pred EEEEEECCCCCCHHHHHHHHC
Q ss_conf 099998269996778995250
Q 000913 895 VLTALMGVSGAGKTTLMDVLA 915 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~ 915 (1226)
-++.|+|.+|+|||||++-+.
T Consensus 3 iKivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 3 VKILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899999899999899999884
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.25 E-value=0.089 Score=24.89 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999982699967789952508
Q 000913 896 LTALMGVSGAGKTTLMDVLAG 916 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g 916 (1226)
.++++|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=90.20 E-value=0.085 Score=25.02 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99998269996778995250897
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
-+|++|--.+|||||++.|.|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.19 E-value=0.076 Score=25.30 Aligned_cols=28 Identities=39% Similarity=0.655 Sum_probs=23.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5784999986999928999999956989
Q 000913 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 176 ~pG~~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
++..-+++.||||+|||+|.+++|+.+.
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 9887578878998763047788787718
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=90.15 E-value=0.099 Score=24.61 Aligned_cols=20 Identities=35% Similarity=0.370 Sum_probs=13.7
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999928999999956
Q 000913 181 TLLLGPPSSGKTTLLLALAG 200 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG 200 (1226)
++++|+..+|||||++.|.+
T Consensus 6 i~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99995889809999999999
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.11 E-value=0.095 Score=24.71 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999826999677899525089
Q 000913 896 LTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
.++++|..|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=90.10 E-value=0.17 Score=23.18 Aligned_cols=25 Identities=24% Similarity=0.088 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869999289999999569899
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~~ 204 (1226)
.+.|=|+-|+||||+++.|+..+..
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9999888667899999999998656
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=90.01 E-value=0.11 Score=24.36 Aligned_cols=22 Identities=36% Similarity=0.726 Sum_probs=15.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699992899999995698
Q 000913 181 TLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
.+++||||.|||++...|+.+.
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 3998358754479999999999
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.89 E-value=0.071 Score=25.51 Aligned_cols=72 Identities=18% Similarity=0.225 Sum_probs=40.7
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 99878992999999999999999999998739997999925975899974286989926949999679986501589898
Q 000913 1025 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYF 1104 (1226)
Q Consensus 1025 ~P~iL~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~ll~l~~gg~~vy~g~~~~~~~~~~~~f 1104 (1226)
+.+++++||.- ++...++..+...+... .....+++++++.+. +... +.++ -..+.+.++.. .++..++
T Consensus 101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~-~~~~~~i~~~~~~~~-i~~~-----l~sr-~~~i~~~~~~~--~~i~~~l 169 (224)
T d1sxjb2 101 KHKIVILDEAD-SMTAGAQQALRRTMELY-SNSTRFAFACNQSNK-IIEP-----LQSQ-CAILRYSKLSD--EDVLKRL 169 (224)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHT-TTTEEEEEEESCGGG-SCHH-----HHTT-SEEEECCCCCH--HHHHHHH
T ss_pred CEEEEEEECCC-CCCHHHHHHHHHHCCCC-CCCEEEEECCCCHHH-HHHH-----HHHH-HHHHHHCCCCH--HHHHHHH
T ss_conf 35999982443-23215778775201123-333366531474302-1067-----8877-77765313322--4567888
Q ss_pred HHC
Q ss_conf 719
Q 000913 1105 EAI 1107 (1226)
Q Consensus 1105 ~~~ 1107 (1226)
..+
T Consensus 170 ~~i 172 (224)
T d1sxjb2 170 LQI 172 (224)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 777
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=89.79 E-value=0.1 Score=24.54 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.2
Q ss_pred EEEEEECCCCCCHHHHHHHHCC
Q ss_conf 0999982699967789952508
Q 000913 895 VLTALMGVSGAGKTTLMDVLAG 916 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~g 916 (1226)
-.+.++|..|+|||||++-+..
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 5 HKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 6999999899588999999972
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.77 E-value=0.082 Score=25.11 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=19.5
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 09999826999677899525089
Q 000913 895 VLTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
=.+.++|.+|+|||||++-+.+.
T Consensus 5 ~Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 5 YKLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998995989999999709
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=89.66 E-value=0.061 Score=25.92 Aligned_cols=22 Identities=45% Similarity=0.572 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9998269996778995250897
Q 000913 897 TALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 897 ~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
+-+.||.|.||||+.+++++..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8988979987888999999984
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.61 E-value=0.11 Score=24.32 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999982699967789952508
Q 000913 896 LTALMGVSGAGKTTLMDVLAG 916 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g 916 (1226)
.++++|+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.57 E-value=0.11 Score=24.30 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999826999677899525089
Q 000913 896 LTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
.+.++|++|+|||+|++-+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.52 E-value=0.11 Score=24.34 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999982699967789952508
Q 000913 896 LTALMGVSGAGKTTLMDVLAG 916 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g 916 (1226)
.+.++|..|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999985
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.44 E-value=0.11 Score=24.19 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 099998269996778995250897
Q 000913 895 VLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
..++|-|.-||||||+++.|+-..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199998998885999999999987
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.41 E-value=0.092 Score=24.80 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=20.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9809999826999677899525089
Q 000913 893 PGVLTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 893 ~G~~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
|--.++++|.+|+|||||++-+.+.
T Consensus 4 p~~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 4 PELRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp CEEEEEEECCTTTTHHHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 8379999998997899999999719
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=89.38 E-value=0.16 Score=23.28 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=23.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 7849999869999289999999569899
Q 000913 177 PGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1226)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL~~LaG~~~~ 204 (1226)
|.=-++++|+..+|||||++.|.|....
T Consensus 7 p~ini~iiGhVd~GKSTL~~~L~~~~~~ 34 (205)
T d2qn6a3 7 PEVNIGVVGHVDHGKTTLVQAITGIWTS 34 (205)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHSCCC-
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCH
T ss_conf 9708999972488699999999704121
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.37 E-value=0.15 Score=23.53 Aligned_cols=29 Identities=41% Similarity=0.621 Sum_probs=24.6
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 99957849999869999289999999569
Q 000913 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 173 ~~i~pG~~~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
|=++.|+++.+.||+|+|||||+..++..
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~ 83 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVAN 83 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98666336999648874889999999998
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=89.25 E-value=0.11 Score=24.35 Aligned_cols=21 Identities=38% Similarity=0.759 Sum_probs=18.5
Q ss_pred EEECCCCCCHHHHHHHHHCCC
Q ss_conf 998699992899999995698
Q 000913 182 LLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 182 ~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
+|+|+||.|||++...|+.+.
T Consensus 47 llvG~~GvGKtaiv~~la~~i 67 (387)
T d1qvra2 47 VLIGEPGVGKTAIVEGLAQRI 67 (387)
T ss_dssp EEEECTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
T ss_conf 687999988999999999999
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.06 E-value=0.16 Score=23.27 Aligned_cols=79 Identities=16% Similarity=0.255 Sum_probs=40.9
Q ss_pred HHHHCCCEEEEECCCCCCCHHH-------H---HHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEECC--CEE
Q ss_conf 9960998789929999999999-------9---999999999873-99979999259758999742869899269--499
Q 000913 1021 ELVANPSIIFMDEPTSGLDARA-------A---AIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG--GQE 1087 (1226)
Q Consensus 1021 ~L~~~P~iL~LDEPTsgLD~~~-------~---~~i~~~l~~l~~-~g~tvi~t~Hqps~~i~~~fD~ll~l~~g--g~~ 1087 (1226)
+-...|.|||+||--+=+..+. . ..+...+..... .+.-||+++++|.. .|.-+ +..| .+.
T Consensus 93 A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~-----ld~al-~r~gRfd~~ 166 (258)
T d1e32a2 93 AEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS-----IDPAL-RRFGRFDRE 166 (258)
T ss_dssp HHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGG-----SCGGG-TSTTSSCEE
T ss_pred HHHCCCEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCC-----CCHHH-HHCCCCCCE
T ss_conf 986499499852111322578877770689998775001101234688117975799310-----25245-424630232
Q ss_pred EEECCCCCCHHHHHHHHHHC
Q ss_conf 99679986501589898719
Q 000913 1088 IYVGPLGRHSCHLISYFEAI 1107 (1226)
Q Consensus 1088 vy~g~~~~~~~~~~~~f~~~ 1107 (1226)
++++++..+. -...++..
T Consensus 167 i~~~~P~~~~--R~~il~~~ 184 (258)
T d1e32a2 167 VDIGIPDATG--RLEILQIH 184 (258)
T ss_dssp EECCCCCHHH--HHHHHHHT
T ss_pred EECCCCCHHH--HHHHHHHH
T ss_conf 3789999889--99873220
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.99 E-value=0.13 Score=23.93 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999826999677899525089
Q 000913 896 LTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
.++++|.+|+|||||++-+.+.
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996999999999719
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.94 E-value=0.13 Score=23.91 Aligned_cols=21 Identities=38% Similarity=0.479 Sum_probs=14.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999289999999569
Q 000913 181 TLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
++++|.+|+|||||++-+...
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999889999999679
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.75 E-value=0.13 Score=23.85 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999982699967789952508
Q 000913 896 LTALMGVSGAGKTTLMDVLAG 916 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g 916 (1226)
.+.++|.+|+|||+|++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999598999999972
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.45 E-value=0.15 Score=23.49 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999826999677899525089
Q 000913 896 LTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
.+.++|.+|+|||+|++-+..-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.44 E-value=0.22 Score=22.43 Aligned_cols=28 Identities=32% Similarity=0.477 Sum_probs=24.0
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 3336980999982699967789952508
Q 000913 889 GAFRPGVLTALMGVSGAGKTTLMDVLAG 916 (1226)
Q Consensus 889 ~~i~~G~~~ai~G~sGaGKTTLl~~L~g 916 (1226)
..+-.|+..+|.|++|+|||||+..++.
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 5636788777667999898999999999
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.37 E-value=0.1 Score=24.49 Aligned_cols=71 Identities=13% Similarity=0.183 Sum_probs=40.1
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 98789929999999999999999999987399979999259758999742869899269499996799865015898987
Q 000913 1026 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLISYFE 1105 (1226)
Q Consensus 1026 P~iL~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~ll~l~~gg~~vy~g~~~~~~~~~~~~f~ 1105 (1226)
.+++++||.- .+.......+.+.+.... ...-++++++++.. +... +..+ ...+.+.++.. .++..+..
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~-~~~~~~~~~~~~~~-i~~~-----i~sr-~~~i~~~~~~~--~~i~~~l~ 168 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERYT-KNTRFCVLANYAHK-LTPA-----LLSQ-CTRFRFQPLPQ--EAIERRIA 168 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHTT-TTEEEEEEESCGGG-SCHH-----HHTT-SEEEECCCCCH--HHHHHHHH
T ss_pred EEEEEEECCC-CCHHHHHHHHHHHHHHCC-CCEEECCCCCCHHH-HHHH-----HHHH-HHHHCCCCCCC--CCCCCCCC
T ss_conf 1899996632-000237899998863112-00232012670877-5999-----9988-75401235652--00011021
Q ss_pred HC
Q ss_conf 19
Q 000913 1106 AI 1107 (1226)
Q Consensus 1106 ~~ 1107 (1226)
.+
T Consensus 169 ~I 170 (227)
T d1sxjc2 169 NV 170 (227)
T ss_dssp HH
T ss_pred CC
T ss_conf 22
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.27 E-value=0.13 Score=23.77 Aligned_cols=22 Identities=41% Similarity=0.617 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699992899999995698
Q 000913 181 TLLLGPPSSGKTTLLLALAGKL 202 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG~~ 202 (1226)
+++.||+|+||||+.++++..+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9988999998899999999762
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=88.17 E-value=0.12 Score=24.07 Aligned_cols=24 Identities=29% Similarity=0.234 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999928999999956989
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
.+.|=|+-||||||+++.|+..+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989867789999999999817
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.15 E-value=0.13 Score=23.82 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=24.5
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 99957849999869999289999999569
Q 000913 173 GVIKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 173 ~~i~pG~~~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
..+-.|+-.+|.|++|+|||+|+.-++..
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 56367887776679998989999999998
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=87.89 E-value=0.19 Score=22.87 Aligned_cols=20 Identities=35% Similarity=0.350 Sum_probs=12.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999928999999956
Q 000913 181 TLLLGPPSSGKTTLLLALAG 200 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~LaG 200 (1226)
.+++|...+|||||+..|..
T Consensus 12 i~viGHVd~GKSTL~~~Ll~ 31 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLH 31 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99993789898999999999
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.55 E-value=0.19 Score=22.87 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=20.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 980999982699967789952508
Q 000913 893 PGVLTALMGVSGAGKTTLMDVLAG 916 (1226)
Q Consensus 893 ~G~~~ai~G~sGaGKTTLl~~L~g 916 (1226)
|---+|++|.-++|||||++.|..
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 971999994789849999999999
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=87.53 E-value=0.13 Score=23.90 Aligned_cols=25 Identities=24% Similarity=0.113 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869999289999999569899
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~~ 204 (1226)
.+.|=|+-||||||+++.|+..+..
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~ 31 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAI 31 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999888778899999999998734
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=87.19 E-value=0.2 Score=22.65 Aligned_cols=27 Identities=37% Similarity=0.463 Sum_probs=22.4
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 698099998269996778995250897
Q 000913 892 RPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 892 ~~G~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
+|...+-++||+|+|||.|.+.|+...
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 876699997888624899999999983
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=87.10 E-value=0.11 Score=24.39 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99998269996778995250897
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
.+.+.||.|.||||+++.++...
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89967899989999999999998
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.00 E-value=0.2 Score=22.62 Aligned_cols=20 Identities=25% Similarity=0.488 Sum_probs=10.4
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99998269996778995250
Q 000913 896 LTALMGVSGAGKTTLMDVLA 915 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~ 915 (1226)
.+.++|..|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsl~~r~~ 23 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMK 23 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999988899999884
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=86.89 E-value=0.18 Score=23.01 Aligned_cols=48 Identities=4% Similarity=0.035 Sum_probs=36.2
Q ss_pred HHCCCEEEEECCCCC-CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHH
Q ss_conf 609987899299999-999999999999999873999799992597589
Q 000913 1023 VANPSIIFMDEPTSG-LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 1070 (1226)
Q Consensus 1023 ~~~P~iL~LDEPTsg-LD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~ 1070 (1226)
..+.++|++|+--.= -+...+..+..++......|+.+|+++..+..+
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~ 143 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQK 143 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGG
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHH
T ss_conf 7621301011265505865778899999998763166389954875100
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=86.89 E-value=0.2 Score=22.65 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999869999289999999569
Q 000913 179 RLTLLLGPPSSGKTTLLLALAGK 201 (1226)
Q Consensus 179 ~~~~ilGp~GsGKSTLL~~LaG~ 201 (1226)
.+++|.|+.||||||..+.|+..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999799998899999999986
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.69 E-value=0.17 Score=23.16 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99998269996778995250897
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
++-|-|.=|||||||++-|....
T Consensus 5 v~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89986488899999999998567
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=86.61 E-value=0.2 Score=22.62 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=12.2
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99998269996778995250
Q 000913 896 LTALMGVSGAGKTTLMDVLA 915 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~ 915 (1226)
-++++|--++|||||++.|.
T Consensus 5 Ni~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 5 NLIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 89999447999999999999
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.61 E-value=0.23 Score=22.33 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99998699992899999995698999
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKLDPT 205 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~~~ 205 (1226)
-++++|..|+|||||++-+....-|+
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t 29 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAG 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 99999999988899999884089797
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=86.41 E-value=0.2 Score=22.68 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=14.0
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 369809999826999677899525089
Q 000913 891 FRPGVLTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 891 i~~G~~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
...-.++-+.||-++|||+++++|...
T Consensus 101 ~~k~n~~~l~G~~~tGKS~f~~~i~~~ 127 (267)
T d1u0ja_ 101 FGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp STTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 976179999858988778999999998
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=86.28 E-value=0.2 Score=22.72 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 09999826999677899525089
Q 000913 895 VLTALMGVSGAGKTTLMDVLAGR 917 (1226)
Q Consensus 895 ~~~ai~G~sGaGKTTLl~~L~g~ 917 (1226)
-.+||+|--.+|||||+++|++-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 34888899999889999999779
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=86.17 E-value=0.56 Score=19.89 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999928999999956989
Q 000913 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1226)
Q Consensus 180 ~~~ilGp~GsGKSTLL~~LaG~~~ 203 (1226)
...+.||+++|||++..+|...+.
T Consensus 55 ~i~~~GP~~TGKS~f~~sl~~~l~ 78 (205)
T d1tuea_ 55 CLVFCGPANTGKSYFGMSFIHFIQ 78 (205)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899988998568999999999828
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.98 E-value=0.24 Score=22.15 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999982699967789952508
Q 000913 896 LTALMGVSGAGKTTLMDVLAG 916 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g 916 (1226)
.+.++|.+|+|||||++-+..
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999988999999967
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=85.83 E-value=0.21 Score=22.50 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999982699967789952508977
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRKT 919 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~~ 919 (1226)
.++|=|+-|+||||+++.|+....
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989867789999999999817
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=85.49 E-value=0.19 Score=22.82 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=21.4
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 3698099998269996778995250897
Q 000913 891 FRPGVLTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 891 i~~G~~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
..++. +-++||+|+|||-|.+.||...
T Consensus 66 ~p~~n-iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 66 LSKSN-ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CCCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCC-EEEECCCCCCHHHHHHHHHHHC
T ss_conf 78753-2441899863789999998644
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=85.10 E-value=0.28 Score=21.71 Aligned_cols=20 Identities=35% Similarity=0.640 Sum_probs=17.0
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 57849999869999289999
Q 000913 176 KPGRLTLLLGPPSSGKTTLL 195 (1226)
Q Consensus 176 ~pG~~~~ilGp~GsGKSTLL 195 (1226)
+.|...+..|-||.|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCE
T ss_conf 88988999704779856023
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.01 E-value=0.25 Score=22.08 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHH---CCCC
Q ss_conf 9998699992899999995---6989
Q 000913 181 TLLLGPPSSGKTTLLLALA---GKLD 203 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~La---G~~~ 203 (1226)
++|+|+.++|||||+.+|. |...
T Consensus 20 I~iiGhvd~GKTTL~d~Ll~~~g~i~ 45 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLVQRAGIIS 45 (341)
T ss_dssp EEEECCGGGTHHHHHHHHHHHHBCCB
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCC
T ss_conf 99996888869999999999779866
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=84.22 E-value=0.32 Score=21.43 Aligned_cols=19 Identities=37% Similarity=0.655 Sum_probs=15.1
Q ss_pred CCEEEEEECCCCCCHHHHH
Q ss_conf 7849999869999289999
Q 000913 177 PGRLTLLLGPPSSGKTTLL 195 (1226)
Q Consensus 177 pG~~~~ilGp~GsGKSTLL 195 (1226)
.|...+..|.||.|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEECCCCCCCCCCC
T ss_conf 9988999736879814221
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=83.66 E-value=0.28 Score=21.79 Aligned_cols=23 Identities=30% Similarity=0.248 Sum_probs=16.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99998269996778995250897
Q 000913 896 LTALMGVSGAGKTTLMDVLAGRK 918 (1226)
Q Consensus 896 ~~ai~G~sGaGKTTLl~~L~g~~ 918 (1226)
.++|=|+-|+||||+++.|+...
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l 29 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHF 29 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998887788999999999987
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=83.59 E-value=0.16 Score=23.25 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=19.1
Q ss_pred EECCEEEEEECCCCCCHHH-HH-HHHH
Q ss_conf 9578499998699992899-99-9995
Q 000913 175 IKPGRLTLLLGPPSSGKTT-LL-LALA 199 (1226)
Q Consensus 175 i~pG~~~~ilGp~GsGKST-LL-~~La 199 (1226)
++.|+.++|.+|+|||||+ .+ .++.
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~ 32 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVR 32 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHH
T ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 646994999979999787999999999
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=83.55 E-value=0.23 Score=22.24 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=13.6
Q ss_pred EEEECCCCCCHHHHHHHHC
Q ss_conf 9998269996778995250
Q 000913 897 TALMGVSGAGKTTLMDVLA 915 (1226)
Q Consensus 897 ~ai~G~sGaGKTTLl~~L~ 915 (1226)
++++|--++|||||++.|.
T Consensus 27 i~iiGHVD~GKSTL~~~Ll 45 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNIL 45 (245)
T ss_dssp EEEEECGGGTHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHH
T ss_conf 9999527989999999999
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=83.53 E-value=0.28 Score=21.76 Aligned_cols=19 Identities=47% Similarity=0.781 Sum_probs=16.4
Q ss_pred CCEEEEEECCCCCCHHHHH
Q ss_conf 9809999826999677899
Q 000913 893 PGVLTALMGVSGAGKTTLM 911 (1226)
Q Consensus 893 ~G~~~ai~G~sGaGKTTLl 911 (1226)
.|+...+.|.||.|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEECCCCCCCCCCC
T ss_conf 9988999736879814221
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=83.06 E-value=0.33 Score=21.34 Aligned_cols=20 Identities=45% Similarity=0.747 Sum_probs=16.9
Q ss_pred CCCEEEEEECCCCCCHHHHH
Q ss_conf 69809999826999677899
Q 000913 892 RPGVLTALMGVSGAGKTTLM 911 (1226)
Q Consensus 892 ~~G~~~ai~G~sGaGKTTLl 911 (1226)
+.|+...+.|.||.|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCE
T ss_conf 88988999704779856023
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.85 E-value=0.24 Score=22.15 Aligned_cols=29 Identities=17% Similarity=0.118 Sum_probs=23.9
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 52333698099998269996778995250
Q 000913 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLA 915 (1226)
Q Consensus 887 vs~~i~~G~~~ai~G~sGaGKTTLl~~L~ 915 (1226)
.-..+-.|+..+|+|++|+|||+|+.-++
T Consensus 61 ~l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 61 SLVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 34676678778765688888589999999
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.85 E-value=0.41 Score=20.71 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=9.2
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999869999289999999
Q 000913 181 TLLLGPPSSGKTTLLLAL 198 (1226)
Q Consensus 181 ~~ilGp~GsGKSTLL~~L 198 (1226)
++++|+.++|||||...|
T Consensus 9 i~iiGHvD~GKsTl~~~l 26 (239)
T d1f60a3 9 VVVIGHVDSGKSTTTGHL 26 (239)
T ss_dssp EEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHH
T ss_conf 999947899899999999
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=82.51 E-value=0.57 Score=19.82 Aligned_cols=37 Identities=16% Similarity=0.086 Sum_probs=19.6
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 998789929999999999999999999987399979999259
Q 000913 1025 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1066 (1226)
Q Consensus 1025 ~P~iL~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hq 1066 (1226)
++++++.||.--=-| .+...+..+...|++|+|.-=+
T Consensus 79 ~~dvI~IDE~QFf~d-----~i~~~~~~~~~~g~~Viv~GLd 115 (139)
T d2b8ta1 79 ETKVIGIDEVQFFDD-----RICEVANILAENGFVVIISGLD 115 (139)
T ss_dssp TCCEEEECSGGGSCT-----HHHHHHHHHHHTTCEEEEECCS
T ss_pred CCCEEEECHHHHCCH-----HHHHHHHHHHHCCCEEEEEEEC
T ss_conf 767999610343561-----5889999998448518999961
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=82.28 E-value=0.29 Score=21.69 Aligned_cols=29 Identities=17% Similarity=0.137 Sum_probs=23.5
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 52333698099998269996778995250
Q 000913 887 VSGAFRPGVLTALMGVSGAGKTTLMDVLA 915 (1226)
Q Consensus 887 vs~~i~~G~~~ai~G~sGaGKTTLl~~L~ 915 (1226)
.=..+-.|+..+|.|++|+|||+|+..+.
T Consensus 60 ~l~pig~GQr~~Ifg~~g~GKt~l~~~~~ 88 (276)
T d1fx0a3 60 AMIPVGRGQRELIIGDRQTGKTAVATDTI 88 (276)
T ss_dssp TTSCCBTTCBCBEEESSSSSHHHHHHHHH
T ss_pred CCCCCCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 01454677667600677888579999977
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.24 E-value=0.26 Score=21.91 Aligned_cols=65 Identities=15% Similarity=0.306 Sum_probs=42.2
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 532332479998878988999999999996099878992999999999999999999998739997999925975
Q 000913 994 PLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1068 (1226)
Q Consensus 994 ~~~~~~vg~~~~~~LSgGqrkrl~Ia~~L~~~P~iL~LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps 1068 (1226)
.+.-.++..||...++++-..-+. +.+--+|+. .+..|+-+.+...+..+.+ .+..+++++....
T Consensus 95 ~~~inliDtPGh~dF~~ev~~al~-----~~D~allVV-da~eGv~~qT~~~~~~a~~----~~~p~i~viNKiD 159 (341)
T d1n0ua2 95 SFLINLIDSPGHVDFSSEVTAALR-----VTDGALVVV-DTIEGVCVQTETVLRQALG----ERIKPVVVINKVD 159 (341)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHH-----TCSEEEEEE-ETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHH-----HCCCEEEEE-ECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCC
T ss_conf 537999737873889999998875-----237249998-6566820469999999987----6998699987726
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=80.57 E-value=0.46 Score=20.39 Aligned_cols=20 Identities=45% Similarity=0.712 Sum_probs=17.2
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 57849999869999289999
Q 000913 176 KPGRLTLLLGPPSSGKTTLL 195 (1226)
Q Consensus 176 ~pG~~~~ilGp~GsGKSTLL 195 (1226)
+.|...+..|-||.|||||-
T Consensus 12 ~~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 12 KQGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TTCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCE
T ss_conf 88987999736778812051
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.15 E-value=0.66 Score=19.43 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=12.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHC
Q ss_conf 8099998269996778995250
Q 000913 894 GVLTALMGVSGAGKTTLMDVLA 915 (1226)
Q Consensus 894 G~~~ai~G~sGaGKTTLl~~L~ 915 (1226)
|.+.-|+||-.|||||-|--.+
T Consensus 2 G~L~li~GpMfsGKTt~Li~~~ 23 (133)
T d1xbta1 2 GQIQVILGPMFSGKSTELMRRV 23 (133)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEEECCCCHHHHHHHHHH
T ss_conf 4799999141678999999999
|