Citrus Sinensis ID: 000927
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1222 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FLH0 | 1042 | Putative nuclear matrix c | no | no | 0.666 | 0.782 | 0.291 | 5e-75 |
| >sp|Q9FLH0|NMCP_ARATH Putative nuclear matrix constituent protein 1-like protein OS=Arabidopsis thaliana GN=At5g65770 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 283 bits (725), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 258/885 (29%), Positives = 457/885 (51%), Gaps = 70/885 (7%)
Query: 46 VPPPPPVNSLLDYNSGSATVFPAESEDDWRRFREAGLLDEATMERKDREALMEKVSKLEK 105
P N L + P E W+R ++AG DE +++ +D+ AL+ ++KLE
Sbjct: 13 TPSTAATNRLTITPNSRVLKSPLTEEIMWKRLKDAGF-DEQSIKNRDKAALIAYIAKLES 71
Query: 106 ELYDYQYNMGLLLIEKKEWTSKIEELRQSFEETQEILKREQSAHLIAFSEAEKREDNLRR 165
E+YDYQ+NMGLLL+EK E +S+ EE++ S +E+ RE+SA++ A +EA+KRE++L++
Sbjct: 72 EVYDYQHNMGLLLLEKNELSSQYEEIKASVDESDLTHMREKSAYVSALAEAKKREESLKK 131
Query: 166 ALSMEKQCVADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEA 225
+ + K+C++ LEK L +M E A+TK+ + T+++A+ ++ K + E K AAEA
Sbjct: 132 DVGIAKECISSLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLADAEAKMRAAEA 191
Query: 226 KLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQI 285
AE NR E KL+E+ESRE + R S +E E E +R+ L E K LQ
Sbjct: 192 LQAEANRYHRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKSLQQ 251
Query: 286 GDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEI-----N 340
ERL + + +LNQRE + I + ++L ELEK +D + + +E N
Sbjct: 252 EHERLLDAQVSLNQRE------DHIF-ARSQELAELEKGLDTAKTTFEEERKAFEDKKSN 304
Query: 341 SRLAELVVKEREADCLRS-----------------------------TVEMKEKRLLTIE 371
+A + +RE C S ++ KE+ LL E
Sbjct: 305 LEIALALCAKREEVCFYSHNSLLFLVLHYRSSKKFLGDKIAVSERESSLLKKEQELLVAE 364
Query: 372 EKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISH 431
EK+ ++E IQ +L +Q IL ++ + E ELE K KS+E E+ SK A + +E +I
Sbjct: 365 EKIASKESELIQNVLANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQ 424
Query: 432 REEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKES 491
RE+ + +E L+ +S + EKE D+ + ++ E+EK + A E+ + + L +KE
Sbjct: 425 REDLVGEKEHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKER 484
Query: 492 LQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELL 551
L+ L +E+ Q + + ++ QKL+ + E SEL L+ +LK++++ R Q+ +
Sbjct: 485 LRKLDLELQQSLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEM 544
Query: 552 LKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAM 611
L E + L+ ++ KFE EWE +D KR+E+ KE E I +++ + +K+E A+
Sbjct: 545 LAEADRLKVEKAKFEAEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEERDAL 604
Query: 612 RDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRD 671
R+ + ++E++ ++E F M E K + +R L EMQ+ E + N+R+
Sbjct: 605 RNQHKNDVESLNREREEFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYCIENKRE 664
Query: 672 KMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQ 731
++E ++R + FE++++ I LKE+AE E++ ++ E +L+ E+ E+K++RE+ +
Sbjct: 665 ELENSSRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERRE 724
Query: 732 EQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQ 791
+ ++ ++EL + +L R + E++ +E+ +N + ++ +Q
Sbjct: 725 REWAELKDSVEELKVQREKLETQRHMLRAERDEIRHEIEELKKLENLKVALDDMSMAKMQ 784
Query: 792 LPDDEARNDIPLPQVAERCLGNRQGDVAAPYD-------SNISNSHGGMNLG-------R 837
L + L + E+ +Q V+ + S +SNS G N
Sbjct: 785 LSN--------LERSWEKVSALKQKVVSRDDELDLQNGVSTVSNSEDGYNSSMERQNGLT 836
Query: 838 ADSGGHMSWLRKCTSKIFSISPIKKSEHISTSMLEEEEPQSAVPT 882
S SW+++CT+ IF SP K ++++ E + VP+
Sbjct: 837 PSSATPFSWIKRCTNLIFKTSPEK------STLMHHYEEEGGVPS 875
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Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1222 | ||||||
| 359473006 | 1213 | PREDICTED: putative nuclear matrix const | 0.966 | 0.973 | 0.562 | 0.0 | |
| 147815739 | 1234 | hypothetical protein VITISV_038920 [Viti | 0.969 | 0.960 | 0.559 | 0.0 | |
| 255566809 | 1172 | ATP binding protein, putative [Ricinus c | 0.942 | 0.982 | 0.533 | 0.0 | |
| 297737881 | 1122 | unnamed protein product [Vitis vinifera] | 0.905 | 0.986 | 0.527 | 0.0 | |
| 224101667 | 1008 | predicted protein [Populus trichocarpa] | 0.816 | 0.990 | 0.552 | 0.0 | |
| 356502495 | 1210 | PREDICTED: putative nuclear matrix const | 0.966 | 0.976 | 0.470 | 0.0 | |
| 449458807 | 1169 | PREDICTED: putative nuclear matrix const | 0.945 | 0.988 | 0.459 | 0.0 | |
| 356526607 | 1191 | PREDICTED: putative nuclear matrix const | 0.889 | 0.912 | 0.454 | 0.0 | |
| 449525632 | 1204 | PREDICTED: LOW QUALITY PROTEIN: putative | 0.941 | 0.955 | 0.430 | 0.0 | |
| 356568883 | 1191 | PREDICTED: putative nuclear matrix const | 0.886 | 0.909 | 0.456 | 0.0 |
| >gi|359473006|ref|XP_002278531.2| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1155 bits (2987), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 705/1254 (56%), Positives = 919/1254 (73%), Gaps = 73/1254 (5%)
Query: 1 MFTPQRRPIPATKLTPRGTEAQSSG--AISNARNI-KGKAVAFAETQSVPPPPPVNSLLD 57
MFTPQR+ LTPR +EAQ SG A+SN N KGK+VAF + PPPP+ SL
Sbjct: 1 MFTPQRKAWTGLSLTPR-SEAQKSGGGAVSNPVNGGKGKSVAFVDG----PPPPLGSL-- 53
Query: 58 YNSGSATVFPAESED--DWRRFREAGLLDEATMERKDREALMEKVSKLEKELYDYQYNMG 115
SG A + + D DWRR REAGLLDEA MERKDREAL+EKVSKL+ EL+DYQY+MG
Sbjct: 54 --SGKAMLTGIDGGDMEDWRRLREAGLLDEAAMERKDREALVEKVSKLQNELFDYQYSMG 111
Query: 116 LLLIEKKEWTSKIEELRQSFEETQEILKREQSAHLIAFSEAEKREDNLRRALSMEKQCVA 175
LLLIEKKEWTSK EEL Q+ E QEILKRE+SAH IA SE EKRE+NLR+AL +E+QCVA
Sbjct: 112 LLLIEKKEWTSKYEELSQALAEAQEILKREKSAHFIAISEVEKREENLRKALGVERQCVA 171
Query: 176 DLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSS 235
+LEKAL ++ E +Q KL SE L+DAN L+ IE +SLEVEEK AA+AKLAE +RKSS
Sbjct: 172 ELEKALGEIHAEHSQIKLSSETKLSDANALVAKIEKRSLEVEEKLLAADAKLAEASRKSS 231
Query: 236 ELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRR 295
ELE KLQE+E+RESV++RERLSL EREAHEA F+KQ+EDLREWE+KLQ G+ERL E RR
Sbjct: 232 ELERKLQEVEARESVLRRERLSLNAEREAHEATFHKQKEDLREWERKLQEGEERLCEGRR 291
Query: 296 TLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKEREADC 355
+NQRE KANE +R LK KER+LEE +KKIDL S +K +ED+IN+RLAEL VKE++A+
Sbjct: 292 IINQREEKANEIDRTLKLKERNLEEAQKKIDLDSLNVKVKEDDINNRLAELTVKEKQAES 351
Query: 356 LRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEM 415
+R +E+KEK L+ ++EKL+ARERVEIQKLLD+ RAILD K+QEFELE+E+KR S++EE+
Sbjct: 352 MRGILEVKEKELIVLQEKLSARERVEIQKLLDEHRAILDTKKQEFELEMEQKRNSVDEEL 411
Query: 416 RSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEE 475
RSK+ ++Q+E E+ HREEKL +REQAL+K+ +RVKEKE +L A+LK++KE+EK +KAEE
Sbjct: 412 RSKVHEVEQKEVEVLHREEKLGKREQALEKRLERVKEKEKELEAKLKTLKEKEKSLKAEE 471
Query: 476 KKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQS 535
K++E EK++++ADKESL +LK E+++I ++ +QELQI EE ++LK+ EEE+SE RLQ
Sbjct: 472 KRVEGEKKQMLADKESLHLLKDELEKIRADITEQELQIHEETERLKVTEEERSEHHRLQL 531
Query: 536 QLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEK 595
+LKQ+I+ RHQ+E+L KE EDL+Q+R FEK+WE LDEKR I KE +I DEK+KLEK
Sbjct: 532 ELKQEIDKCRHQEEMLQKEREDLKQERIMFEKDWEALDEKRAVITKEMREIGDEKEKLEK 591
Query: 596 LQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEF 655
L S EERLKKE+ AM +++QRE+EA+R++KE+F A M+HEQL RK E
Sbjct: 592 LHLSEEERLKKEKLAMEEHIQRELEAVRIEKESFAAIMKHEQL----------RKRDLEI 641
Query: 656 EMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQ 715
EMQ NR+D+++K LQER R FEE+RER LN+I HLKEVA EI+E+K+ER +
Sbjct: 642 EMQ---------NRQDEIQKRLQERERAFEEERERELNNINHLKEVARREIEEMKTERRR 692
Query: 716 LEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSC 775
+EKEK EV +N+ +L+ QL MRKDIDEL IL R+L REQF +E++RFL FV+KH +C
Sbjct: 693 IEKEKQEVLLNKRQLEGHQLEMRKDIDELGILSRKLKDQREQFIKERDRFLTFVDKHKTC 752
Query: 776 KNCGEMMRAFVISNLQLPDDEARNDIPLPQVAERCLGNRQGDVAAPYDSNISNSHGGMNL 835
KNCGE+ R FV+++LQLP+ E PLP +A+ L + QG++AA +N+ S G ++L
Sbjct: 753 KNCGEITREFVLNDLQLPEMEVEA-FPLPNLADEFLNSPQGNMAASDGTNVKISTGEIDL 811
Query: 836 GRADSGGHMSWLRKCTSKIFSISPIKKSEHISTSMLEEEEPQSAVPTIMQEKAEGPGVLV 895
+ SGG MS+LRKC +KIF++SP KKSEH+ +L EE P + + EKAEGP +
Sbjct: 812 VSSGSGGRMSFLRKCATKIFNLSPSKKSEHVGVQVLREESPLLDLQVNL-EKAEGPSI-- 868
Query: 896 SKEAIGYSIPEDEPQSSFRLVNDSTN----------REMDDEYAPSVDGHSYMDSKVEDV 945
+G SI EDE + SF + NDS + RE+D +A SVDG S M SK ++
Sbjct: 869 ----VGQSIAEDELEPSFGIANDSFDIQQLHSDSVMREVDGGHAQSVDGVSNMGSKEQEG 924
Query: 946 AEDSQQSELRSGKRRPGRKRKSGVNRTRSVKAAVEDAKLFLGESPEGAGLNA------SF 999
EDSQQSEL+SG+R+PGRKR++GV+RTRSVK VEDAK FLGE+PE LN S
Sbjct: 925 PEDSQQSELKSGRRKPGRKRRTGVHRTRSVKNVVEDAKAFLGETPEIPELNGDERPNDST 984
Query: 1000 QAHEDSQGISSHTQE-ASNMAKKRRRPQTSKTTQSEKDGADSEGYSDSVTAGGGRRKRHQ 1058
+E+ + +SH ++ AS + +KR+R +S+ T+SE+D ADSEG SDSVTA GGR KR Q
Sbjct: 985 YTNEEGERETSHAEKAASTITRKRQRAPSSRITESEQDAADSEGRSDSVTA-GGRGKRRQ 1043
Query: 1059 TVATVSQTPGERRYNLRRHKTSSAVLALEASADLSKANK--TVAEVTNPVEVVSNPKSAS 1116
TVA V QTPGE+RYNLRRHKT+ V +ASA+L K ++ N ++ +NPK+AS
Sbjct: 1044 TVAPVVQTPGEKRYNLRRHKTAGTVATAQASANLPKRDEKGGDGGDDNTLQTKANPKAAS 1103
Query: 1117 TFPPAVLNENGKSTHLVQVTSVKSMEL---SRDRAVRFKSTTNIVDENADAPKSIENTVL 1173
+ P ++N K+T LV VT++KS+E+ S DR VRFK T +IV N D+ + EN L
Sbjct: 1104 S-PSLADSDNPKTTPLVHVTTLKSVEIREYSPDRVVRFK-TVDIVGGNNDSARLAENMEL 1161
Query: 1174 SEEVNG----TSEYVDEDENGGRV-LEDEEDDDDDSDHPGEASIGKKLWNFFTS 1222
+E+ G T Y EDENG ED+ D+D+S+HPG+ASIGKKLWNFFT+
Sbjct: 1162 RQEIPGNPGDTPGY--EDENGSMSHEEDDNSDEDESEHPGDASIGKKLWNFFTT 1213
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147815739|emb|CAN74873.1| hypothetical protein VITISV_038920 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255566809|ref|XP_002524388.1| ATP binding protein, putative [Ricinus communis] gi|223536349|gb|EEF37999.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|297737881|emb|CBI27082.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224101667|ref|XP_002312375.1| predicted protein [Populus trichocarpa] gi|222852195|gb|EEE89742.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356502495|ref|XP_003520054.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449458807|ref|XP_004147138.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356526607|ref|XP_003531908.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449525632|ref|XP_004169820.1| PREDICTED: LOW QUALITY PROTEIN: putative nuclear matrix constituent protein 1-like protein-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356568883|ref|XP_003552637.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1222 | ||||||
| TAIR|locus:2031875 | 1128 | LINC2 "LITTLE NUCLEI2" [Arabid | 0.743 | 0.805 | 0.447 | 6.3e-203 | |
| TAIR|locus:2019529 | 1132 | LINC1 "AT1G67230" [Arabidopsis | 0.797 | 0.860 | 0.376 | 1.2e-177 | |
| TAIR|locus:2012423 | 1085 | LINC3 "LITTLE NUCLEI3" [Arabid | 0.562 | 0.633 | 0.442 | 2.7e-174 | |
| TAIR|locus:2169950 | 1042 | LINC4 "LITTLE NUCLEI4" [Arabid | 0.564 | 0.662 | 0.267 | 6.8e-54 | |
| ZFIN|ZDB-GENE-050208-317 | 1422 | tnks1bp1 "tankyrase 1 binding | 0.514 | 0.442 | 0.243 | 1.1e-32 | |
| ZFIN|ZDB-GENE-030616-583 | 1376 | acin1a "apoptotic chromatin co | 0.510 | 0.453 | 0.258 | 7e-32 | |
| GENEDB_PFALCIPARUM|PF11_0486 | 2055 | PF11_0486 "MAEBL, putative" [P | 0.569 | 0.338 | 0.224 | 1e-26 | |
| UNIPROTKB|Q8IHP3 | 2055 | PF11_0486 "MAEBL, putative" [P | 0.569 | 0.338 | 0.224 | 1e-26 | |
| DICTYBASE|DDB_G0271058 | 1528 | vilC "villin-like protein C" [ | 0.470 | 0.376 | 0.272 | 4.7e-25 | |
| DICTYBASE|DDB_G0295683 | 1589 | DDB_G0295683 "cofilin/tropomyo | 0.454 | 0.349 | 0.222 | 1.7e-24 |
| TAIR|locus:2031875 LINC2 "LITTLE NUCLEI2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1845 (654.5 bits), Expect = 6.3e-203, Sum P(2) = 6.3e-203
Identities = 417/931 (44%), Positives = 580/931 (62%)
Query: 14 LTPRGTEAQSSGAISNARNI--KGKAVAFAETQSXXXXXXXNSLLDYNSGSATVFPAESE 71
+TPR +E G ++N RN KGKAVAF++ + +G V ++
Sbjct: 1 MTPR-SETHKIGGVTNPRNADRKGKAVAFSD--DLVIPTLPPPPIGTLTGQG-VSRGHTD 56
Query: 72 D----DWRRFREAGLLDEATMERKDREALMEKVSKLEKELYDYQYNMGLLLIEKKEWTSK 127
D DWRRFRE GLL+EA+ME+KD+EAL+EK+S LEKELY YQ+NMGLLL+E KE SK
Sbjct: 57 DMDMGDWRRFREVGLLNEASMEKKDQEALLEKISTLEKELYGYQHNMGLLLMENKELVSK 116
Query: 128 IEELRQSFEETQEILKREQSAHLIAFSEAEKREDNLRRALSMEKQCVADLEKALRDMGEE 187
E+L Q+F+E QEILKREQS+HL A + E+RE+NLR+AL +EKQCV +LEKALR++ EE
Sbjct: 117 HEQLNQAFQEAQEILKREQSSHLYALTTVEQREENLRKALGLEKQCVQELEKALREIQEE 176
Query: 188 RAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESR 247
++ +L SE L +AN L+ + G+S +VE K ++AE+KLAE RKSSEL+++L+E+E+R
Sbjct: 177 NSKIRLSSEAKLVEANALVASVNGRSSDVENKIYSAESKLAEATRKSSELKLRLKEVETR 236
Query: 248 ESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANEN 307
ESV+++ERLS ERE++E F KQRE L EWEKKLQ +E ++E +R LNQRE K NE
Sbjct: 237 ESVLQQERLSFTKERESYEGTFQKQREYLNEWEKKLQGKEESITEQKRNLNQREEKVNEI 296
Query: 308 ERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKEREADCLRSTVEMKEKRL 367
E+ LK KE++LEE +K+DLS SK KE E++I RL EL KE+EA L+ T+ KE L
Sbjct: 297 EKKLKLKEKELEEWNRKVDLSMSKSKETEEDITKRLEELTTKEKEAHTLQITLLAKENEL 356
Query: 368 LTIEEKLNARERVEIQKLLDDQRAILDAXXXXXXXXXXXXXXXXXXXXXXKISALDQQEF 427
EEKL ARE EIQKL+DDQ+ +L + KI L++Q+
Sbjct: 357 RAFEEKLIAREGTEIQKLIDDQKEVLGSKMLEFELECEEIRKSLDKELQRKIEELERQKV 416
Query: 428 EISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKERXXXXXXXXXXXXXXXXXXIA 487
EI H EEKLE+R QA++KK DRV EKE DL A+LK++KER ++
Sbjct: 417 EIDHSEEKLEKRNQAMNKKFDRVNEKEMDLEAKLKTIKEREKIIQAEEKRLSLEKQQLLS 476
Query: 488 DKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQ 547
DKESL+ L+ EI++I +E ++E I+EEC+ L+I +EE+ E LRLQS+LK QIE R
Sbjct: 477 DKESLEDLQQEIEKIRAEMTKKEEMIEEECKSLEIKKEEREEYLRLQSELKSQIEKSRVH 536
Query: 548 QELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKE 607
+E L KE E+L+Q++E+FEKEWE+LDEK+ NKE+ +I++EK+K E+ Q ERLKKE
Sbjct: 537 EEFLSKEVENLKQEKERFEKEWEILDEKQAVYNKERIRISEEKEKFERFQLLEGERLKKE 596
Query: 608 ECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELL 667
E A+R + +E++ IRL +E+FEA M HE+ L EK K ++ K++++ EM R N E EL
Sbjct: 597 ESALRVQIMQELDDIRLQRESFEANMEHERSALQEKVKLEQSKVIDDLEMMRRNLEIELQ 656
Query: 668 NRRDKMEKELQXXXXXXXXXXXXVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNR 727
R+++ EK+L L+DI H K+ E++E+ S+R L+KE E+ ++
Sbjct: 657 ERKEQDEKDLLDRMAQFEDKRMAELSDINHQKQALNREMEEMMSKRSALQKESEEIAKHK 716
Query: 728 EKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVI 787
+KL+EQQ+ M DI EL L L RE F RE+ RFL FV+K C +CG+++ FV+
Sbjct: 717 DKLKEQQVEMHNDISELSTLSINLKKRREVFGRERSRFLAFVQKLKDCGSCGQLVNDFVL 776
Query: 788 SNLQLP-DDEARNDIPLPQVAERCLGNRQGDVAAPYDSNISNSHGGMNLGRADSGG-HMS 845
S+LQLP +DE LP + L + G A NI S G G S MS
Sbjct: 777 SDLQLPSNDEVAI---LPPIG--VLNDLPGSSNASDSCNIKKSLDGDASGSGGSRRPSMS 831
Query: 846 WLRKCTXXXXXXXXXXXXEH-ISTSMLEEEEPQSAVPTIMQEKAEGP-GVLVSKEAIGYS 903
L+KCT EH I T E+ S+V M+ K E P V + S
Sbjct: 832 ILQKCTSIIFSPSKRV--EHGIDTGK-PEQRLSSSVAVGMETKGEKPLPVDLRLRPSSSS 888
Query: 904 IPEDEPQSSFRLVNDSTNREMDDEYAPSVDG 934
IPE++ + + V +++ E+ S G
Sbjct: 889 IPEEDEEYTDSRVQETSEGSQLSEFQSSRRG 919
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| TAIR|locus:2019529 LINC1 "AT1G67230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2012423 LINC3 "LITTLE NUCLEI3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2169950 LINC4 "LITTLE NUCLEI4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-050208-317 tnks1bp1 "tankyrase 1 binding protein 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-030616-583 acin1a "apoptotic chromatin condensation inducer 1a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| GENEDB_PFALCIPARUM|PF11_0486 PF11_0486 "MAEBL, putative" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q8IHP3 PF11_0486 "MAEBL, putative" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0271058 vilC "villin-like protein C" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0295683 DDB_G0295683 "cofilin/tropomyosin type actin binding domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 |
 | GSVIVG00030268001 | SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (1091 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1222 | |||
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 8e-21 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-19 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 6e-18 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 1e-17 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-17 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 2e-17 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-16 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 3e-16 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 6e-16 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 9e-16 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-15 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-15 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 5e-15 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-13 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 1e-13 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 4e-13 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 1e-12 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-12 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 3e-12 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 3e-12 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 5e-12 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 7e-12 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 9e-12 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-11 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-11 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-11 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 3e-11 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 3e-11 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 5e-11 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 6e-11 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 1e-10 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-10 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 2e-09 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-09 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 5e-09 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 5e-09 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 8e-09 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 1e-08 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-08 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-08 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 2e-08 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 2e-08 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 3e-08 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 5e-08 | |
| TIGR00606 | 1311 | TIGR00606, rad50, rad50 | 5e-08 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 8e-08 | |
| TIGR03319 | 514 | TIGR03319, RNase_Y, ribonuclease Y | 1e-07 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 2e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-07 | |
| COG5022 | 1463 | COG5022, COG5022, Myosin heavy chain [Cytoskeleton | 2e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 4e-07 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 5e-07 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 6e-07 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 6e-07 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 1e-06 | |
| pfam07888 | 546 | pfam07888, CALCOCO1, Calcium binding and coiled-co | 1e-06 | |
| TIGR03185 | 650 | TIGR03185, DNA_S_dndD, DNA sulfur modification pro | 2e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-06 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 3e-06 | |
| pfam13166 | 713 | pfam13166, AAA_13, AAA domain | 3e-06 | |
| PRK00106 | 535 | PRK00106, PRK00106, hypothetical protein; Provisio | 3e-06 | |
| PRK01156 | 895 | PRK01156, PRK01156, chromosome segregation protein | 3e-06 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 4e-06 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 4e-06 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 5e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 6e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 7e-06 | |
| COG0610 | 962 | COG0610, COG0610, Type I site-specific restriction | 7e-06 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 1e-05 | |
| PRK01156 | 895 | PRK01156, PRK01156, chromosome segregation protein | 1e-05 | |
| COG4717 | 984 | COG4717, COG4717, Uncharacterized conserved protei | 1e-05 | |
| PRK04778 | 569 | PRK04778, PRK04778, septation ring formation regul | 1e-05 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 2e-05 | |
| pfam13166 | 713 | pfam13166, AAA_13, AAA domain | 2e-05 | |
| COG1269 | 660 | COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su | 2e-05 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 3e-05 | |
| PRK04863 | 1486 | PRK04863, mukB, cell division protein MukB; Provis | 3e-05 | |
| pfam05557 | 722 | pfam05557, MAD, Mitotic checkpoint protein | 4e-05 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 4e-05 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 4e-05 | |
| pfam05622 | 713 | pfam05622, HOOK, HOOK protein | 4e-05 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 4e-05 | |
| pfam06160 | 559 | pfam06160, EzrA, Septation ring formation regulato | 4e-05 | |
| PRK00409 | 782 | PRK00409, PRK00409, recombination and DNA strand e | 4e-05 | |
| COG2433 | 652 | COG2433, COG2433, Uncharacterized conserved protei | 9e-05 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 1e-04 | |
| TIGR03185 | 650 | TIGR03185, DNA_S_dndD, DNA sulfur modification pro | 1e-04 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 1e-04 | |
| PRK00409 | 782 | PRK00409, PRK00409, recombination and DNA strand e | 1e-04 | |
| pfam01496 | 707 | pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni | 1e-04 | |
| COG2268 | 548 | COG2268, COG2268, Uncharacterized protein conserve | 1e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-04 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 2e-04 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 2e-04 | |
| pfam01496 | 707 | pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni | 2e-04 | |
| PRK12705 | 508 | PRK12705, PRK12705, hypothetical protein; Provisio | 2e-04 | |
| PRK12705 | 508 | PRK12705, PRK12705, hypothetical protein; Provisio | 2e-04 | |
| pfam06785 | 401 | pfam06785, UPF0242, Uncharacterized protein family | 2e-04 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 3e-04 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 3e-04 | |
| COG5281 | 833 | COG5281, COG5281, Phage-related minor tail protein | 3e-04 | |
| pfam12072 | 201 | pfam12072, DUF3552, Domain of unknown function (DU | 3e-04 | |
| TIGR00606 | 1311 | TIGR00606, rad50, rad50 | 4e-04 | |
| pfam10174 | 774 | pfam10174, Cast, RIM-binding protein of the cytoma | 4e-04 | |
| TIGR00606 | 1311 | TIGR00606, rad50, rad50 | 5e-04 | |
| TIGR00606 | 1311 | TIGR00606, rad50, rad50 | 6e-04 | |
| PLN02939 | 977 | PLN02939, PLN02939, transferase, transferring glyc | 6e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 8e-04 | |
| COG1269 | 660 | COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su | 0.001 | |
| pfam05557 | 722 | pfam05557, MAD, Mitotic checkpoint protein | 0.001 | |
| PRK12705 | 508 | PRK12705, PRK12705, hypothetical protein; Provisio | 0.001 | |
| PTZ00108 | 1388 | PTZ00108, PTZ00108, DNA topoisomerase 2-like prote | 0.001 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 0.001 | |
| COG5185 | 622 | COG5185, HEC1, Protein involved in chromosome segr | 0.001 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.002 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 0.002 | |
| TIGR00606 | 1311 | TIGR00606, rad50, rad50 | 0.002 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 0.002 | |
| COG3096 | 1480 | COG3096, MukB, Uncharacterized protein involved in | 0.002 | |
| pfam04156 | 186 | pfam04156, IncA, IncA protein | 0.002 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 0.003 | |
| TIGR03319 | 514 | TIGR03319, RNase_Y, ribonuclease Y | 0.003 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.003 | |
| COG5185 | 622 | COG5185, HEC1, Protein involved in chromosome segr | 0.003 | |
| COG5185 | 622 | COG5185, HEC1, Protein involved in chromosome segr | 0.003 | |
| pfam04156 | 186 | pfam04156, IncA, IncA protein | 0.003 | |
| PTZ00440 | 2722 | PTZ00440, PTZ00440, reticulocyte binding protein 2 | 0.003 | |
| pfam07888 | 546 | pfam07888, CALCOCO1, Calcium binding and coiled-co | 0.004 | |
| COG1269 | 660 | COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su | 0.004 | |
| PRK00409 | 782 | PRK00409, PRK00409, recombination and DNA strand e | 0.004 | |
| COG3096 | 1480 | COG3096, MukB, Uncharacterized protein involved in | 0.004 | |
| TIGR01843 | 423 | TIGR01843, type_I_hlyD, type I secretion membrane | 0.004 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 8e-21
Identities = 125/596 (20%), Positives = 263/596 (44%), Gaps = 46/596 (7%)
Query: 214 LEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRER------LSLVTEREAHEA 267
+ +E+ AE KL LE L+ELE + ++R+ L E E
Sbjct: 168 SKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELEL 227
Query: 268 AFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDL 327
A L+E K+L+ +E LS L L + + + E E+ +++ + +LEEL ++++
Sbjct: 228 ALL--LAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEE 285
Query: 328 SSSKLKEREDEINSRLAELVVKEREADCLRSTVEMKEKRLLTIEEKLNAR-----ERVEI 382
+L E ++EI E+ + + L + +E E+RL ++EK+ A ER +
Sbjct: 286 LQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETL 345
Query: 383 QKLLDDQRAILDAKQQEFELELEEKRKSIEEEM---RSKISALDQQEFEISHREEKLERR 439
+ L+ A L+ ++E E +L + +EE R +++ L+ + EI + E+L+R
Sbjct: 346 LEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKRE 405
Query: 440 EQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEI 499
++L+++ +R+ E+ DL LK ++ + ++ E ++L E ++L E L+ +
Sbjct: 406 IESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRD---RL 462
Query: 500 DQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEH---E 556
++E E A+ + ++Q ++L E L Q + + L +
Sbjct: 463 KELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVA 522
Query: 557 DLQQDREKFEKEWEV-LDEKRDEINKEQEKIADEKKKLEKLQH----------SAEERLK 605
+L + +EK+E E L + + E E++A + + K +
Sbjct: 523 ELIKVKEKYETALEAALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRS 582
Query: 606 KEECAMRDYVQREIEAIRLDKE---AFEATMRHEQLVLS-EKAKNDRRKMLEEFEMQRMN 661
+ A ++ + I D + A + +V E+A+ RK+ ++ + +
Sbjct: 583 LKSDAAPGFLGLASDLIDFDPKYEPAVRFVLGDTLVVDDLEQARRLARKLRIKYRI--VT 640
Query: 662 QEAELLNRR------DKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQ 715
+ +L+ + ++ + R +E E L ++ E E E++ +K+E
Sbjct: 641 LDGDLVEPSGSITGGSRNKRSSLAQKRELKELEEE-LAELEAQLEKLEEELKSLKNELRS 699
Query: 716 LEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEK 771
LE E++ E+L+ Q +++++ L+ +L E+ + E E E +E+
Sbjct: 700 LEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEE 755
|
Length = 1163 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|129694 TIGR00606, rad50, rad50 | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
| >gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like | Back alignment and domain information |
|---|
| >gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|221952 pfam13166, AAA_13, AAA domain | Back alignment and domain information |
|---|
| >gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|179877 PRK04778, PRK04778, septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|221952 pfam13166, AAA_13, AAA domain | Back alignment and domain information |
|---|
| >gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|218661 pfam05622, HOOK, HOOK protein | Back alignment and domain information |
|---|
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|114855 pfam06160, EzrA, Septation ring formation regulator, EzrA | Back alignment and domain information |
|---|
| >gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family | Back alignment and domain information |
|---|
| >gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family | Back alignment and domain information |
|---|
| >gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|219176 pfam06785, UPF0242, Uncharacterized protein family (UPF0242) | Back alignment and domain information |
|---|
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|227606 COG5281, COG5281, Phage-related minor tail protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552) | Back alignment and domain information |
|---|
| >gnl|CDD|129694 TIGR00606, rad50, rad50 | Back alignment and domain information |
|---|
| >gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone | Back alignment and domain information |
|---|
| >gnl|CDD|129694 TIGR00606, rad50, rad50 | Back alignment and domain information |
|---|
| >gnl|CDD|129694 TIGR00606, rad50, rad50 | Back alignment and domain information |
|---|
| >gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein | Back alignment and domain information |
|---|
| >gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|129694 TIGR00606, rad50, rad50 | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|217933 pfam04156, IncA, IncA protein | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y | Back alignment and domain information |
|---|
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|217933 pfam04156, IncA, IncA protein | Back alignment and domain information |
|---|
| >gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like | Back alignment and domain information |
|---|
| >gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1222 | |||
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.5 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 99.45 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.38 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.34 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.26 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 99.11 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.09 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.06 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.05 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.03 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.02 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.0 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 98.91 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.9 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.89 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 98.86 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 98.52 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.44 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 98.39 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 98.29 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 98.19 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 98.04 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.01 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 97.78 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 97.73 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 97.71 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 97.66 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 97.29 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 97.23 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 97.13 | |
| KOG0018 | 1141 | consensus Structural maintenance of chromosome pro | 97.08 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 97.06 | |
| PRK11637 | 428 | AmiB activator; Provisional | 96.91 | |
| PRK11637 | 428 | AmiB activator; Provisional | 96.89 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 96.86 | |
| PRK12704 | 520 | phosphodiesterase; Provisional | 96.77 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 96.76 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 96.54 | |
| TIGR03319 | 514 | YmdA_YtgF conserved hypothetical protein YmdA/YtgF | 96.44 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 96.38 | |
| PRK00106 | 535 | hypothetical protein; Provisional | 96.37 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 96.36 | |
| KOG4643 | 1195 | consensus Uncharacterized coiled-coil protein [Fun | 96.28 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 96.16 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 95.89 | |
| PRK12704 | 520 | phosphodiesterase; Provisional | 95.8 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 95.77 | |
| TIGR03319 | 514 | YmdA_YtgF conserved hypothetical protein YmdA/YtgF | 95.65 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 95.6 | |
| PRK00106 | 535 | hypothetical protein; Provisional | 95.6 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 95.46 | |
| PF12072 | 201 | DUF3552: Domain of unknown function (DUF3552); Int | 95.46 | |
| KOG0964 | 1200 | consensus Structural maintenance of chromosome pro | 95.28 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 95.03 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 94.95 | |
| KOG0018 | 1141 | consensus Structural maintenance of chromosome pro | 94.83 | |
| PF05483 | 786 | SCP-1: Synaptonemal complex protein 1 (SCP-1); Int | 94.79 | |
| PF13851 | 201 | GAS: Growth-arrest specific micro-tubule binding | 94.62 | |
| PF10146 | 230 | zf-C4H2: Zinc finger-containing protein ; InterPro | 94.38 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 94.35 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 93.51 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 93.43 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 92.94 | |
| PF09731 | 582 | Mitofilin: Mitochondrial inner membrane protein; I | 92.62 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 92.41 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 92.18 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 92.14 | |
| PRK12705 | 508 | hypothetical protein; Provisional | 91.93 | |
| COG1340 | 294 | Uncharacterized archaeal coiled-coil protein [Func | 91.92 | |
| PF09728 | 309 | Taxilin: Myosin-like coiled-coil protein; InterPro | 91.37 | |
| KOG0962 | 1294 | consensus DNA repair protein RAD50, ABC-type ATPas | 90.76 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 90.73 | |
| PF12072 | 201 | DUF3552: Domain of unknown function (DUF3552); Int | 89.89 | |
| smart00787 | 312 | Spc7 Spc7 kinetochore protein. This domain is foun | 89.47 | |
| PF09755 | 310 | DUF2046: Uncharacterized conserved protein H4 (DUF | 88.86 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 86.74 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 86.74 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 86.2 | |
| PRK09039 | 343 | hypothetical protein; Validated | 86.07 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 85.94 | |
| COG1340 | 294 | Uncharacterized archaeal coiled-coil protein [Func | 85.82 | |
| PRK12705 | 508 | hypothetical protein; Provisional | 85.5 | |
| PF05262 | 489 | Borrelia_P83: Borrelia P83/100 protein; InterPro: | 85.22 | |
| PF13863 | 126 | DUF4200: Domain of unknown function (DUF4200) | 85.06 | |
| KOG0995 | 581 | consensus Centromere-associated protein HEC1 [Cell | 84.92 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 84.88 | |
| KOG0994 | 1758 | consensus Extracellular matrix glycoprotein Lamini | 84.64 | |
| KOG4673 | 961 | consensus Transcription factor TMF, TATA element m | 84.56 | |
| PRK09039 | 343 | hypothetical protein; Validated | 84.48 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 82.81 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 82.3 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 82.0 |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-07 Score=115.15 Aligned_cols=14 Identities=21% Similarity=0.565 Sum_probs=10.4
Q ss_pred hhcHHHHHHHHHHH
Q 000927 90 RKDREALMEKVSKL 103 (1222)
Q Consensus 90 rkd~~aLia~iskL 103 (1222)
+.+|..++..|..|
T Consensus 148 p~~R~~ii~~l~~l 161 (880)
T PRK02224 148 PSDRQDMIDDLLQL 161 (880)
T ss_pred HHHHHHHHHHHhCC
Confidence 36788888887765
|
|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PRK12704 phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >PRK00106 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >PRK12704 phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >PRK00106 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
| >KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex | Back alignment and domain information |
|---|
| >PF13851 GAS: Growth-arrest specific micro-tubule binding | Back alignment and domain information |
|---|
| >PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >PRK12705 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed | Back alignment and domain information |
|---|
| >KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
| >smart00787 Spc7 Spc7 kinetochore protein | Back alignment and domain information |
|---|
| >PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
| >COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PRK12705 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins | Back alignment and domain information |
|---|
| >PF13863 DUF4200: Domain of unknown function (DUF4200) | Back alignment and domain information |
|---|
| >KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] | Back alignment and domain information |
|---|
| >KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 4e-23
Identities = 61/358 (17%), Positives = 146/358 (40%), Gaps = 9/358 (2%)
Query: 253 RERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILK 312
R +++ + E+++Q DE L + + E + E E+
Sbjct: 829 RSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHT 888
Query: 313 QKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKEREADCLRSTVEMKEKRLLTIEE 372
Q + L++K+ + E E+ A+ E + + +E +E+R ++
Sbjct: 889 QLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQA 948
Query: 373 KLNA--RERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEIS 430
+ ++ +++++ L+++ A K Q ++ + K K +E+++ ++ E
Sbjct: 949 EKKKMQQQMLDLEEQLEEEEAAR-QKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERK 1007
Query: 431 HREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKK---LELEKQKLIA 487
EE++ L ++ ++ K + E E +K EEK LE K+KL
Sbjct: 1008 LLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEG 1067
Query: 488 DKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQ 547
+ L +I +++++ A+ + Q+ ++ ++L+ + ++ ++I
Sbjct: 1068 ESSDLH---EQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESH 1124
Query: 548 QELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLK 605
L ++ E + R K EK+ L E+ + + E E D ++L+ S +
Sbjct: 1125 ISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 | Back alignment and structure |
|---|
| >1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 | Back alignment and structure |
|---|
| >1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 | Back alignment and structure |
|---|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
| >2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 | Back alignment and structure |
|---|
| >2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 | Back alignment and structure |
|---|
| >2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 | Back alignment and structure |
|---|
| >2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 | Back alignment and structure |
|---|
| >2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575 | Back alignment and structure |
|---|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430 | Back alignment and structure |
|---|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Length = 1038 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A Length = 596 | Back alignment and structure |
|---|
| >1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens} Length = 683 | Back alignment and structure |
|---|
| >2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C* Length = 315 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00